Citrus Sinensis ID: 026112
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 243 | 2.2.26 [Sep-21-2011] | |||||||
| Q2GAU7 | 217 | Probable GTP-binding prot | yes | no | 0.662 | 0.741 | 0.466 | 6e-38 | |
| Q1GJX8 | 216 | Probable GTP-binding prot | yes | no | 0.757 | 0.851 | 0.438 | 2e-36 | |
| Q16AA3 | 216 | Probable GTP-binding prot | yes | no | 0.691 | 0.777 | 0.456 | 1e-35 | |
| Q5FPX9 | 227 | Probable GTP-binding prot | yes | no | 0.658 | 0.704 | 0.425 | 2e-34 | |
| Q3IYY4 | 217 | Probable GTP-binding prot | yes | no | 0.683 | 0.764 | 0.437 | 7e-34 | |
| Q5LW13 | 217 | Probable GTP-binding prot | yes | no | 0.670 | 0.751 | 0.451 | 8e-34 | |
| Q98D85 | 212 | Probable GTP-binding prot | yes | no | 0.679 | 0.778 | 0.451 | 1e-33 | |
| Q9ZG89 | 199 | GTP-binding protein EngB | yes | no | 0.666 | 0.814 | 0.419 | 6e-33 | |
| B8H1E7 | 199 | Probable GTP-binding prot | yes | no | 0.666 | 0.814 | 0.419 | 6e-33 | |
| Q9RNL6 | 212 | GTP-binding protein EngB | yes | no | 0.650 | 0.745 | 0.413 | 7e-33 |
| >sp|Q2GAU7|ENGB_NOVAD Probable GTP-binding protein EngB OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=engB PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 157 bits (398), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 113/165 (68%), Gaps = 4/165 (2%)
Query: 56 PFSTSSERERIEEN--IFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALT 113
P ++ +E IE+ +F ++EF +A P PD+PEIAFAGRSNVGKSS+LNALT
Sbjct: 3 PEEQAAHQELIEQARLLFAGRVEFLKSAPALKFLPDPDVPEIAFAGRSNVGKSSLLNALT 62
Query: 114 RQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171
+ + RTS PG TQ +N+F++G T+L LVD+PGYGFA A +V + W LV++++
Sbjct: 63 GRKSLARTSVTPGRTQELNYFEVGEPTRLRLVDMPGYGFAKAPPKVVETWRRLVRDFLRG 122
Query: 172 RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216
RV LKR LLID++ GVKP D +++ +++ + Y++VLTK D +
Sbjct: 123 RVVLKRTLLLIDSRHGVKPVDDDMMQMLDEAGVGYRIVLTKADKI 167
|
Necessary for normal cell division and for the maintenance of normal septation. Novosphingobium aromaticivorans (strain DSM 12444) (taxid: 279238) |
| >sp|Q1GJX8|ENGB_RUEST Probable GTP-binding protein EngB OS=Ruegeria sp. (strain TM1040) GN=engB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 114/187 (60%), Gaps = 3/187 (1%)
Query: 46 IELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGK 105
++L PL P + + E R +F + EF S P D E+ FAGRSNVGK
Sbjct: 1 MQLPFPLAEEPDAAAMETGR---KLFAGQSEFLKGVVAMSGLPPADRIEVCFAGRSNVGK 57
Query: 106 SSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165
SS++NALT G+ R S+ PG TQ INFF G +L LVDLPGYG+A A V + W+ L+
Sbjct: 58 SSLINALTGTKGLARASNTPGRTQEINFFTQGPELYLVDLPGYGYANAPLAVVEKWQRLL 117
Query: 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRA 225
K+Y+S R +L+R +LIDT+ GVK D E++ L++ S +QVV+TK D V D A+
Sbjct: 118 KQYLSGRQTLRRAFVLIDTRHGVKKVDEEIMKLLDTSAVTFQVVMTKADKVKEKDRAKIL 177
Query: 226 MQIEESL 232
Q+ ++L
Sbjct: 178 DQVRDAL 184
|
Necessary for normal cell division and for the maintenance of normal septation. Silicibacter sp. (strain TM1040) (taxid: 292414) |
| >sp|Q16AA3|ENGB_ROSDO Probable GTP-binding protein EngB OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=engB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 106/171 (61%), Gaps = 3/171 (1%)
Query: 46 IELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGK 105
++L P+ P S E+ R+ +F EF S P PD E+ FAGRSNVGK
Sbjct: 1 MQLPFPVAQDPDQHSLEKGRL---LFAGDTEFVKGVVAMSGLPDPDRLEVCFAGRSNVGK 57
Query: 106 SSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165
SS++NALT + G+ R S+ PG TQ INFF G LVDLPGYG+A A V + W+ L+
Sbjct: 58 SSLINALTGRKGLARASNTPGRTQEINFFTAGESHYLVDLPGYGYANAPVPVVEKWQRLL 117
Query: 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216
K+Y+S R +L+R +LID + GVK D E++SL++ + +QVVLTK D V
Sbjct: 118 KQYLSGRQTLRRAFVLIDARHGVKKVDEEILSLLDSAAVTFQVVLTKADKV 168
|
Necessary for normal cell division and for the maintenance of normal septation. Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (taxid: 375451) |
| >sp|Q5FPX9|ENGB_GLUOX Probable GTP-binding protein EngB OS=Gluconobacter oxydans (strain 621H) GN=engB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 106/160 (66%)
Query: 70 IFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ 129
+F + EFF ++ P PE+AFAGRSNVGKSS++NALT + + R S +PG T+
Sbjct: 20 LFAGECEFFFGSQKIDQLPPVGRPEVAFAGRSNVGKSSIINALTGRRALARASSEPGRTK 79
Query: 130 TINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK 189
+NFF L +L LVD+PGYGFA A + VK+ W++++ Y+ R +L+RV LL+D + +K
Sbjct: 80 QLNFFNLADRLSLVDMPGYGFAKAAKSVKEDWQDMMFAYLRGRTTLERVILLLDARIELK 139
Query: 190 PRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229
D +++ L++R+ +Q+VLTK D V P +A + ++E
Sbjct: 140 ASDKDVMELLDRAAVVFQIVLTKCDQVKPKALAAKIAEVE 179
|
Necessary for normal cell division and for the maintenance of normal septation. Gluconobacter oxydans (strain 621H) (taxid: 290633) |
| >sp|Q3IYY4|ENGB_RHOS4 Probable GTP-binding protein EngB OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=engB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 144 bits (362), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 103/169 (60%), Gaps = 3/169 (1%)
Query: 48 LSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSS 107
L PL P S E R+ +F +F + P D E+ FAGRSNVGKSS
Sbjct: 4 LPFPLSPEPDEASREAGRL---LFAGPCDFVKGVTTMEALPPADRIEVCFAGRSNVGKSS 60
Query: 108 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167
++NALT + + R S+ PG TQ IN+F LG LVDLPGYG+A A + + W+ L+K
Sbjct: 61 LINALTGRKALARASNTPGRTQEINYFALGPSRYLVDLPGYGYAEAPKPIVQRWQRLLKG 120
Query: 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216
Y++ R +L+R +LIDT+ GVK D E+++L++RS +QVV+TK D V
Sbjct: 121 YLAGRQTLRRAFVLIDTRHGVKSVDEEILTLLDRSAVTFQVVMTKADKV 169
|
Necessary for normal cell division and for the maintenance of normal septation. Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943) |
| >sp|Q5LW13|ENGB_RUEPO Probable GTP-binding protein EngB OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=engB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 144 bits (362), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 103/166 (62%), Gaps = 3/166 (1%)
Query: 51 PLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLN 110
P+ P + ++E R +F EF S P D E+ FAGRSNVGKSS++N
Sbjct: 7 PVAEEPDAFTAETGR---KLFAGPSEFVKGVVAMSGLPPADRVEVCFAGRSNVGKSSLIN 63
Query: 111 ALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170
ALT G+ R S+ PG TQ INFF G +L LVDLPGYG+A A +V + W++L+K+Y+S
Sbjct: 64 ALTGTKGLARASNTPGRTQEINFFTQGPELYLVDLPGYGYANAPLKVVEKWQKLLKQYLS 123
Query: 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216
R +L+R +LID + GVK D E++ L++ S +Q VLTK D V
Sbjct: 124 GRQTLRRAFVLIDARHGVKAVDDEIMKLLDTSAVTFQCVLTKADKV 169
|
Necessary for normal cell division and for the maintenance of normal septation. Silicibacter pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (taxid: 246200) |
| >sp|Q98D85|ENGB_RHILO Probable GTP-binding protein EngB OS=Rhizobium loti (strain MAFF303099) GN=engB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 143 bits (361), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 108/177 (61%), Gaps = 12/177 (6%)
Query: 66 IEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP 125
I ++F F P PEIAFAGRSNVGKSS++NAL Q G+ RTS+ P
Sbjct: 2 ITTDLFTRGWIFIRGVPAMKFLPPEGPPEIAFAGRSNVGKSSLINALVNQKGLARTSNTP 61
Query: 126 GLTQTINFF------KLGTKL---CLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLK 176
G TQ +N+F G L LVD+PGYG+A A +E D W +LV +Y+ RV+LK
Sbjct: 62 GRTQELNYFVPDGFSGEGADLPPMALVDMPGYGYATAPKEKVDEWTKLVFDYLKGRVTLK 121
Query: 177 RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 233
RV +LID + G+K +D E++SL++++ YQ+VLTKTD I VA IEE+L+
Sbjct: 122 RVYVLIDARHGIKAKDDEVLSLLDKAAVSYQIVLTKTDK---IKVAGVPRLIEETLQ 175
|
Necessary for normal cell division and for the maintenance of normal septation. Rhizobium loti (strain MAFF303099) (taxid: 266835) |
| >sp|Q9ZG89|ENGB_CAUCR GTP-binding protein EngB OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=engB PE=3 SV=2 | Back alignment and function description |
|---|
Score = 140 bits (354), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 101/162 (62%)
Query: 71 FRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT 130
F + F A + P DLPE+AFAGRSNVGKSS++N L Q + R S++PG T+
Sbjct: 3 FAQPVSFIMGAVRMDAMPPSDLPEVAFAGRSNVGKSSLINGLVNQKYLARASNEPGRTRE 62
Query: 131 INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP 190
INFF L K+ LVDLPGYGFA + D +++L + Y+ R +LKRV +LID + G+K
Sbjct: 63 INFFLLAEKVRLVDLPGYGFARVSRSIADKFQDLGRAYLRGRANLKRVYVLIDARHGLKK 122
Query: 191 RDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 232
D E + ++ + YQ+VLTK D + P +V + + ++++
Sbjct: 123 VDLEALDALDVAAVSYQIVLTKADKIKPAEVDKVVAETQKAI 164
|
Necessary for normal cell division and for the maintenance of normal septation. Caulobacter crescentus (strain ATCC 19089 / CB15) (taxid: 190650) |
| >sp|B8H1E7|ENGB_CAUCN Probable GTP-binding protein EngB OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=engB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 140 bits (354), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 101/162 (62%)
Query: 71 FRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT 130
F + F A + P DLPE+AFAGRSNVGKSS++N L Q + R S++PG T+
Sbjct: 3 FAQPVSFIMGAVRMDAMPPSDLPEVAFAGRSNVGKSSLINGLVNQKYLARASNEPGRTRE 62
Query: 131 INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP 190
INFF L K+ LVDLPGYGFA + D +++L + Y+ R +LKRV +LID + G+K
Sbjct: 63 INFFLLAEKVRLVDLPGYGFARVSRSIADKFQDLGRAYLRGRANLKRVYVLIDARHGLKK 122
Query: 191 RDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 232
D E + ++ + YQ+VLTK D + P +V + + ++++
Sbjct: 123 VDLEALDALDVAAVSYQIVLTKADKIKPAEVDKVVAETQKAI 164
|
Necessary for normal cell division and for the maintenance of normal septation. Caulobacter crescentus (strain NA1000 / CB15N) (taxid: 565050) |
| >sp|Q9RNL6|ENGB_ZYMMO GTP-binding protein EngB OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=engB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 140 bits (354), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 109/167 (65%), Gaps = 9/167 (5%)
Query: 70 IFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ 129
+F + F +A PAP PE+AFAGRSNVGKSS++NALT + + R S PG TQ
Sbjct: 15 LFAGAVNFLKSAPALEFLPAPTAPEVAFAGRSNVGKSSLINALTNRNSLARASTTPGRTQ 74
Query: 130 TINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG 187
+NFF +G ++ LVD+PGYGFA A ++V W+ L+ +Y+ R L+R +LID++ G
Sbjct: 75 ELNFFDVGEPLQMRLVDMPGYGFAKAPKDVVKRWKWLINDYLRGRAVLRRSLILIDSRHG 134
Query: 188 VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234
+K D +L+ +++ + Y+VVLTK+D + +A+++E+++KA
Sbjct: 135 IKDVDRDLMKMLDDAAISYRVVLTKSDKI-------KAVELEKTVKA 174
|
Necessary for normal cell division and for the maintenance of normal septation. Zymomonas mobilis (strain ATCC 31821 / ZM4 / CP4) (taxid: 264203) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 243 | ||||||
| 255553339 | 489 | GTP binding protein, putative [Ricinus c | 0.971 | 0.482 | 0.923 | 1e-126 | |
| 356569473 | 540 | PREDICTED: uncharacterized protein LOC10 | 0.975 | 0.438 | 0.877 | 1e-121 | |
| 224145468 | 305 | predicted protein [Populus trichocarpa] | 0.995 | 0.793 | 0.872 | 1e-120 | |
| 356537641 | 535 | PREDICTED: uncharacterized protein LOC10 | 0.975 | 0.442 | 0.873 | 1e-120 | |
| 343172533 | 343 | putative GTP-binding protein, partial [S | 0.983 | 0.696 | 0.849 | 1e-118 | |
| 42573726 | 465 | putative GTP-binding protein CGPA [Arabi | 0.991 | 0.518 | 0.846 | 1e-118 | |
| 343172535 | 343 | putative GTP-binding protein, partial [S | 0.983 | 0.696 | 0.845 | 1e-117 | |
| 297793371 | 467 | predicted protein [Arabidopsis lyrata su | 0.991 | 0.516 | 0.838 | 1e-117 | |
| 18424095 | 446 | putative GTP-binding protein CGPA [Arabi | 0.987 | 0.538 | 0.85 | 1e-117 | |
| 449439155 | 535 | PREDICTED: uncharacterized protein LOC10 | 0.979 | 0.444 | 0.852 | 1e-112 |
| >gi|255553339|ref|XP_002517711.1| GTP binding protein, putative [Ricinus communis] gi|223543109|gb|EEF44643.1| GTP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust.
Identities = 218/236 (92%), Positives = 226/236 (95%)
Query: 7 MSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERI 66
MSKNAQFRAI+PSPSILSFVEDNLLGRRR IEL+RAGYNIELSAPLDNIP STSSERERI
Sbjct: 213 MSKNAQFRAIKPSPSILSFVEDNLLGRRRLIELKRAGYNIELSAPLDNIPLSTSSERERI 272
Query: 67 EENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG 126
EENIFRNKL FFAAAKVSSSFP PDLPEIAFAGRSNVGKSS+LNALTRQWGV RTSDKPG
Sbjct: 273 EENIFRNKLTFFAAAKVSSSFPPPDLPEIAFAGRSNVGKSSLLNALTRQWGVARTSDKPG 332
Query: 127 LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186
LTQTINFF LG KLCLVDLPGYGFAYAKEEVKDAWE+LVKEYVSTRV LKRVCLLIDTKW
Sbjct: 333 LTQTINFFSLGPKLCLVDLPGYGFAYAKEEVKDAWEDLVKEYVSTRVGLKRVCLLIDTKW 392
Query: 187 GVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242
G+KPRDHELI+LMERSQTKYQ+VLTKTD VFPIDVARRAMQIEESLKAN S+VQPV
Sbjct: 393 GMKPRDHELINLMERSQTKYQIVLTKTDVVFPIDVARRAMQIEESLKANKSIVQPV 448
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356569473|ref|XP_003552925.1| PREDICTED: uncharacterized protein LOC100799694 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust.
Identities = 208/237 (87%), Positives = 225/237 (94%)
Query: 7 MSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERI 66
MSKNAQFRAIQPSP ILSFVE NLLGRRR I+L+RAGYNI+LSAPLDNIPFS+SSERE+I
Sbjct: 277 MSKNAQFRAIQPSPLILSFVEKNLLGRRRMIDLKRAGYNIDLSAPLDNIPFSSSSEREKI 336
Query: 67 EENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG 126
EENIFRNKLEFFAAAKVSSSFP P+LPEIAFAGRSNVGKSS+LNALTRQWGVVRTSDKPG
Sbjct: 337 EENIFRNKLEFFAAAKVSSSFPTPNLPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDKPG 396
Query: 127 LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186
LTQTINFF+LGTK CLVDLPGYGFAYAKEEVK++WEELVKEYVSTRV LKRVCLLIDTKW
Sbjct: 397 LTQTINFFQLGTKHCLVDLPGYGFAYAKEEVKESWEELVKEYVSTRVGLKRVCLLIDTKW 456
Query: 187 GVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243
G+KPRD ELI LMERS+TKYQ+VLTKTD VFPIDVARRAMQIEE+L N S+V+PV+
Sbjct: 457 GMKPRDLELIELMERSKTKYQIVLTKTDMVFPIDVARRAMQIEENLFQNKSVVKPVM 513
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224145468|ref|XP_002325653.1| predicted protein [Populus trichocarpa] gi|222862528|gb|EEF00035.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 212/243 (87%), Positives = 225/243 (92%), Gaps = 1/243 (0%)
Query: 1 MEKNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTS 60
+EK+ MS NAQFRAIQPSPSILSFVEDN LGRRR IEL+RAGYN +LSAPLDNIPFSTS
Sbjct: 38 LEKDAGMSMNAQFRAIQPSPSILSFVEDNFLGRRRSIELKRAGYNTDLSAPLDNIPFSTS 97
Query: 61 SERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVR 120
SERERIEENIFRNKL FFAAAKVSSSFP P LPEIAFAGRSNVGKSS+LN+LTRQWGV R
Sbjct: 98 SERERIEENIFRNKLTFFAAAKVSSSFPPPGLPEIAFAGRSNVGKSSLLNSLTRQWGVAR 157
Query: 121 TSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCL 180
TSDKPGLTQTINFF+LG +CLVDLPGYGFAYAKEEVKD+WEELVKEYVS RV+LKRVCL
Sbjct: 158 TSDKPGLTQTINFFELGN-VCLVDLPGYGFAYAKEEVKDSWEELVKEYVSMRVNLKRVCL 216
Query: 181 LIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 240
LIDTKWG+KPRD ELI LMER QTKYQVV+TKTD VFPIDVARRAMQIEESLKAN SLVQ
Sbjct: 217 LIDTKWGMKPRDRELIDLMERYQTKYQVVMTKTDLVFPIDVARRAMQIEESLKANKSLVQ 276
Query: 241 PVV 243
PV+
Sbjct: 277 PVM 279
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356537641|ref|XP_003537334.1| PREDICTED: uncharacterized protein LOC100801850 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 207/237 (87%), Positives = 224/237 (94%)
Query: 7 MSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERI 66
MSKNAQFRAIQPSP ILSFVE NLLGRRR I+L+RAGYNI+LSAPLDNIPFS+SSERE+I
Sbjct: 272 MSKNAQFRAIQPSPLILSFVEKNLLGRRRMIDLKRAGYNIDLSAPLDNIPFSSSSEREKI 331
Query: 67 EENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG 126
EENIFRNKL+FFAAAKVSSSFP P+LPEIAFAGRSNVGKSS+LNALTRQWGVVRTSDKPG
Sbjct: 332 EENIFRNKLDFFAAAKVSSSFPPPNLPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDKPG 391
Query: 127 LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186
LTQTINFF LGTK CLVDLPGYGFAYAKEEVK++WEELVKEYVSTRV L+RVCLLIDTKW
Sbjct: 392 LTQTINFFNLGTKHCLVDLPGYGFAYAKEEVKESWEELVKEYVSTRVGLRRVCLLIDTKW 451
Query: 187 GVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243
G+KPRD ELI LMERS+TKYQ+VLTKTD VFPIDVARRAMQIEESL N S+V+PV+
Sbjct: 452 GMKPRDLELIELMERSKTKYQIVLTKTDVVFPIDVARRAMQIEESLFQNKSVVKPVM 508
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|343172533|gb|AEL98970.1| putative GTP-binding protein, partial [Silene latifolia] | Back alignment and taxonomy information |
|---|
Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust.
Identities = 203/239 (84%), Positives = 224/239 (93%)
Query: 5 VEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERE 64
VEMS NAQF+AI+PS SIL+FV++N LGRRR IELRRAGYN+ELSAPLDN+PFS SSERE
Sbjct: 80 VEMSMNAQFKAIKPSHSILTFVQENFLGRRRDIELRRAGYNVELSAPLDNLPFSASSERE 139
Query: 65 RIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK 124
R+EE++FRNKLEFFAAA+VSSSFP PDLPEIAFAGRSNVGKSS+LNALTRQWGVVRTSDK
Sbjct: 140 RVEESVFRNKLEFFAAARVSSSFPPPDLPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDK 199
Query: 125 PGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 184
PG TQ+INFF LG+KL LVDLPGYGFAYAK+EVK+AWEELVKEYVSTRV LKRVCLLIDT
Sbjct: 200 PGHTQSINFFNLGSKLNLVDLPGYGFAYAKDEVKEAWEELVKEYVSTRVGLKRVCLLIDT 259
Query: 185 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243
KWG+KPRD ELI LMERSQTKYQVVLTKTD VFPIDVARRAMQIEE+LK + S+VQPV+
Sbjct: 260 KWGMKPRDIELIHLMERSQTKYQVVLTKTDVVFPIDVARRAMQIEETLKEHKSIVQPVM 318
|
Source: Silene latifolia Species: Silene latifolia Genus: Silene Family: Caryophyllaceae Order: Caryophyllales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42573726|ref|NP_974959.1| putative GTP-binding protein CGPA [Arabidopsis thaliana] gi|222423373|dbj|BAH19659.1| AT5G58370 [Arabidopsis thaliana] gi|332009661|gb|AED97044.1| putative GTP-binding protein CGPA [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust.
Identities = 204/241 (84%), Positives = 225/241 (93%)
Query: 3 KNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSE 62
K+VEMSKNAQFRAIQPS SILS+VE+NLLGRRR IEL+RAGYN EL APLDNIP STS+E
Sbjct: 199 KSVEMSKNAQFRAIQPSHSILSYVEENLLGRRRLIELKRAGYNTELPAPLDNIPQSTSTE 258
Query: 63 RERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS 122
RERIEE++FRNKLEFFAAA VSSSFP PD+PEIAFAGRSNVGKSS+LNALTRQWGVVRTS
Sbjct: 259 RERIEESVFRNKLEFFAAANVSSSFPPPDVPEIAFAGRSNVGKSSLLNALTRQWGVVRTS 318
Query: 123 DKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 182
DKPGLTQTINFF LG K+ LVDLPGYGFA+AK+EVK+AWE+LVKEYVSTR SLKRVCLL+
Sbjct: 319 DKPGLTQTINFFGLGPKVRLVDLPGYGFAFAKDEVKEAWEDLVKEYVSTRTSLKRVCLLV 378
Query: 183 DTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242
DTKWG+KPRD ELI+LMERS TKYQ+VLTKTD VFPIDVARRAMQIEE LKAN S+VQP+
Sbjct: 379 DTKWGMKPRDQELINLMERSNTKYQIVLTKTDVVFPIDVARRAMQIEEKLKANRSIVQPL 438
Query: 243 V 243
+
Sbjct: 439 M 439
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|343172535|gb|AEL98971.1| putative GTP-binding protein, partial [Silene latifolia] | Back alignment and taxonomy information |
|---|
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/239 (84%), Positives = 224/239 (93%)
Query: 5 VEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERE 64
VEMS NAQF+AI+PS SIL+FV++N LGRRR IELRRAGYN+ELSAPLDN+PFS SSERE
Sbjct: 80 VEMSMNAQFKAIKPSHSILTFVQENFLGRRRDIELRRAGYNVELSAPLDNLPFSASSERE 139
Query: 65 RIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK 124
R+EE++FRNKLEFFAAA+VSSSFP PDLPEIAFAGRSNVGKSS+LNALTRQWGVVRTSDK
Sbjct: 140 RVEESVFRNKLEFFAAARVSSSFPPPDLPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDK 199
Query: 125 PGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 184
PG TQ+INFF LG+KL LVDLPGYGFAYAK+EVK+AWEELVKEY+STRV LKRVCLLIDT
Sbjct: 200 PGHTQSINFFNLGSKLNLVDLPGYGFAYAKDEVKEAWEELVKEYLSTRVGLKRVCLLIDT 259
Query: 185 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243
KWG+KPRD ELI LMERSQTKYQVVLTKTD VFPIDVARRAMQIEE+LK + S+VQPV+
Sbjct: 260 KWGMKPRDIELIHLMERSQTKYQVVLTKTDVVFPIDVARRAMQIEETLKEHKSIVQPVM 318
|
Source: Silene latifolia Species: Silene latifolia Genus: Silene Family: Caryophyllaceae Order: Caryophyllales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297793371|ref|XP_002864570.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297310405|gb|EFH40829.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/241 (83%), Positives = 225/241 (93%)
Query: 3 KNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSE 62
K+VEMSKNAQFRAIQPS SILS+VE+NLLGRRR IEL++AGYN EL APLDNIP STS+E
Sbjct: 201 KSVEMSKNAQFRAIQPSHSILSYVEENLLGRRRLIELKKAGYNTELPAPLDNIPQSTSTE 260
Query: 63 RERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS 122
RERIEE++FRNKLEFFAAA VSSSFP PD+PEIAFAGRSNVGKSS+LNALTRQWGVVRTS
Sbjct: 261 RERIEESVFRNKLEFFAAANVSSSFPPPDVPEIAFAGRSNVGKSSLLNALTRQWGVVRTS 320
Query: 123 DKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 182
DKPGLTQTINFF LG K+ LVDLPGYGFA+AK+EVK+AWE+LVKEYVSTR SLKRVCLL+
Sbjct: 321 DKPGLTQTINFFGLGPKVRLVDLPGYGFAFAKDEVKEAWEDLVKEYVSTRTSLKRVCLLV 380
Query: 183 DTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242
DTKWG+KPRD ELI+LMERS TKYQ+VLTKTD VFP+DVARRAMQIEE LKAN S+VQP+
Sbjct: 381 DTKWGMKPRDQELINLMERSNTKYQIVLTKTDVVFPMDVARRAMQIEEKLKANRSIVQPL 440
Query: 243 V 243
+
Sbjct: 441 M 441
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18424095|ref|NP_568876.1| putative GTP-binding protein CGPA [Arabidopsis thaliana] gi|14334980|gb|AAK59667.1| putative GTP-binding protein CGPA [Arabidopsis thaliana] gi|17104637|gb|AAL34207.1| putative GTP-binding protein CGPA [Arabidopsis thaliana] gi|332009660|gb|AED97043.1| putative GTP-binding protein CGPA [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 204/240 (85%), Positives = 224/240 (93%)
Query: 3 KNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSE 62
K+VEMSKNAQFRAIQPS SILS+VE+NLLGRRR IEL+RAGYN EL APLDNIP STS+E
Sbjct: 199 KSVEMSKNAQFRAIQPSHSILSYVEENLLGRRRLIELKRAGYNTELPAPLDNIPQSTSTE 258
Query: 63 RERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS 122
RERIEE++FRNKLEFFAAA VSSSFP PD+PEIAFAGRSNVGKSS+LNALTRQWGVVRTS
Sbjct: 259 RERIEESVFRNKLEFFAAANVSSSFPPPDVPEIAFAGRSNVGKSSLLNALTRQWGVVRTS 318
Query: 123 DKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 182
DKPGLTQTINFF LG K+ LVDLPGYGFA+AK+EVK+AWE+LVKEYVSTR SLKRVCLL+
Sbjct: 319 DKPGLTQTINFFGLGPKVRLVDLPGYGFAFAKDEVKEAWEDLVKEYVSTRTSLKRVCLLV 378
Query: 183 DTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242
DTKWG+KPRD ELI+LMERS TKYQ+VLTKTD VFPIDVARRAMQIEE LKAN S+VQP+
Sbjct: 379 DTKWGMKPRDQELINLMERSNTKYQIVLTKTDVVFPIDVARRAMQIEEKLKANRSIVQPL 438
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449439155|ref|XP_004137353.1| PREDICTED: uncharacterized protein LOC101223165 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/238 (85%), Positives = 221/238 (92%)
Query: 6 EMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERER 65
+MSKNA+FRAIQPS SI+SFVE+NLLGRRR IE+ RAGYN +L++PLDNIPFS S ERER
Sbjct: 272 KMSKNAEFRAIQPSKSIISFVEENLLGRRRMIEIERAGYNTDLTSPLDNIPFSKSEERER 331
Query: 66 IEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP 125
IEENIFRNKL FFAAAKVSSSFP PD+PEIAFAGRSNVGKSS+LNALTRQWGVVRTSDKP
Sbjct: 332 IEENIFRNKLTFFAAAKVSSSFPPPDVPEIAFAGRSNVGKSSLLNALTRQWGVVRTSDKP 391
Query: 126 GLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185
GLTQTINFF LG+KL LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV L+RVCLL+DTK
Sbjct: 392 GLTQTINFFNLGSKLSLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVGLRRVCLLVDTK 451
Query: 186 WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243
WG+KPRD ELI LMERSQTKYQVVLTKTDTVFP+DVARRAMQIEE L N S+VQP++
Sbjct: 452 WGMKPRDQELIDLMERSQTKYQVVLTKTDTVFPMDVARRAMQIEERLTRNKSIVQPLM 509
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 243 | ||||||
| TAIR|locus:2161243 | 465 | AT5G58370 [Arabidopsis thalian | 0.991 | 0.518 | 0.792 | 5.8e-98 | |
| DICTYBASE|DDB_G0348940 | 743 | DDB_G0348940 [Dictyostelium di | 0.662 | 0.216 | 0.450 | 7.4e-34 | |
| UNIPROTKB|Q5LW13 | 217 | engB "Probable GTP-binding pro | 0.687 | 0.769 | 0.440 | 2e-31 | |
| TIGR_CMR|SPO_0530 | 217 | SPO_0530 "GTP-binding protein" | 0.687 | 0.769 | 0.440 | 2e-31 | |
| GENEDB_PFALCIPARUM|PF14_0400 | 1000 | PF14_0400 "hypothetical protei | 0.699 | 0.17 | 0.383 | 1.5e-27 | |
| UNIPROTKB|Q8IL49 | 1000 | PF14_0400 "GTP binding protein | 0.699 | 0.17 | 0.383 | 1.5e-27 | |
| UNIPROTKB|Q2GKS7 | 193 | engB "Probable GTP-binding pro | 0.687 | 0.865 | 0.371 | 7.3e-27 | |
| TIGR_CMR|APH_0421 | 193 | APH_0421 "putative GTP-binding | 0.687 | 0.865 | 0.371 | 7.3e-27 | |
| UNIPROTKB|Q748I9 | 206 | engB "Probable GTP-binding pro | 0.646 | 0.762 | 0.414 | 1.4e-25 | |
| TIGR_CMR|GSU_3013 | 206 | GSU_3013 "GTP-binding protein" | 0.646 | 0.762 | 0.414 | 1.4e-25 |
| TAIR|locus:2161243 AT5G58370 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 973 (347.6 bits), Expect = 5.8e-98, P = 5.8e-98
Identities = 191/241 (79%), Positives = 209/241 (86%)
Query: 3 KNVEMSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPXXXXXX 62
K+VEMSKNAQFRAIQPS SILS+VE+NLLGRRR IEL+RAGYN EL APLDNIP
Sbjct: 199 KSVEMSKNAQFRAIQPSHSILSYVEENLLGRRRLIELKRAGYNTELPAPLDNIPQSTSTE 258
Query: 63 XXXXXXXXXXXKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS 122
KLEFFAAA VSSSFP PD+PEIAFAGRSNVGKSS+LNALTRQWGVVRTS
Sbjct: 259 RERIEESVFRNKLEFFAAANVSSSFPPPDVPEIAFAGRSNVGKSSLLNALTRQWGVVRTS 318
Query: 123 DKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 182
DKPGLTQTINFF LG K+ LVDLPGYGFA+AK+EVK+AWE+LVKEYVSTR SLKRVCLL+
Sbjct: 319 DKPGLTQTINFFGLGPKVRLVDLPGYGFAFAKDEVKEAWEDLVKEYVSTRTSLKRVCLLV 378
Query: 183 DTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242
DTKWG+KPRD ELI+LMERS TKYQ+VLTKTD VFPIDVARRAMQIEE LKAN S+VQP+
Sbjct: 379 DTKWGMKPRDQELINLMERSNTKYQIVLTKTDVVFPIDVARRAMQIEEKLKANRSIVQPL 438
Query: 243 V 243
+
Sbjct: 439 M 439
|
|
| DICTYBASE|DDB_G0348940 DDB_G0348940 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 376 (137.4 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 73/162 (45%), Positives = 110/162 (67%)
Query: 74 KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF 133
K++F AAK SF LPE+AF GRSNVGKSS++NALT++ G+ +TSDKPG TQ+IN+
Sbjct: 257 KMKFIGAAKNIDSFLPETLPEVAFIGRSNVGKSSLINALTQR-GLAKTSDKPGQTQSINW 315
Query: 134 FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH 193
F+LG+ L LVDLPGYGFA+AKE + + W ++ Y++ R + V +LID++ G+K D
Sbjct: 316 FELGSTLYLVDLPGYGFAFAKETLVEQWSDITIHYLTERKCISCVFILIDSRHGLKDSDR 375
Query: 194 ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN 235
L+ +++ + K ++LTK D P D+ +R + ++ N
Sbjct: 376 NLLLELDKKKIKTHIILTKADLTKPEDLVKRISITNQEIQTN 417
|
|
| UNIPROTKB|Q5LW13 engB "Probable GTP-binding protein EngB" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 74/168 (44%), Positives = 103/168 (61%)
Query: 76 EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 135
EF S P D E+ FAGRSNVGKSS++NALT G+ R S+ PG TQ INFF
Sbjct: 29 EFVKGVVAMSGLPPADRVEVCFAGRSNVGKSSLINALTGTKGLARASNTPGRTQEINFFT 88
Query: 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 195
G +L LVDLPGYG+A A +V + W++L+K+Y+S R +L+R +LID + GVK D E+
Sbjct: 89 QGPELYLVDLPGYGYANAPLKVVEKWQKLLKQYLSGRQTLRRAFVLIDARHGVKAVDDEI 148
Query: 196 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243
+ L++ S +Q VLTK D V + + Q+ +L A + P +
Sbjct: 149 MKLLDTSAVTFQCVLTKADKVKAAERDKVLAQVRAAL-AKHPAAYPEI 195
|
|
| TIGR_CMR|SPO_0530 SPO_0530 "GTP-binding protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 74/168 (44%), Positives = 103/168 (61%)
Query: 76 EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 135
EF S P D E+ FAGRSNVGKSS++NALT G+ R S+ PG TQ INFF
Sbjct: 29 EFVKGVVAMSGLPPADRVEVCFAGRSNVGKSSLINALTGTKGLARASNTPGRTQEINFFT 88
Query: 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 195
G +L LVDLPGYG+A A +V + W++L+K+Y+S R +L+R +LID + GVK D E+
Sbjct: 89 QGPELYLVDLPGYGYANAPLKVVEKWQKLLKQYLSGRQTLRRAFVLIDARHGVKAVDDEI 148
Query: 196 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243
+ L++ S +Q VLTK D V + + Q+ +L A + P +
Sbjct: 149 MKLLDTSAVTFQCVLTKADKVKAAERDKVLAQVRAAL-AKHPAAYPEI 195
|
|
| GENEDB_PFALCIPARUM|PF14_0400 PF14_0400 "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Score = 320 (117.7 bits), Expect = 1.5e-27, P = 1.5e-27
Identities = 66/172 (38%), Positives = 102/172 (59%)
Query: 74 KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF 133
++ + A + P P PEIAF GRSN GKS+++N L + + S PG T+ I+F
Sbjct: 95 RMVLYKTAIQVNELPLPKYPEIAFIGRSNCGKSTLINELCGRTNKAKVSKIPGCTKEIHF 154
Query: 134 FKLGTK--LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR 191
+K+G +CLVDLPGYG+A KEE++ W E Y+ R +LK+V +LID + G+K
Sbjct: 155 YKIGKPCLMCLVDLPGYGYAECKEELRLQWNEFTLFYLKNRKNLKKVFVLIDCRVGLKTS 214
Query: 192 DHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243
D EL+ +R KYQ+VL+K D + D+A + I + + +L +P++
Sbjct: 215 DKELLHFFDRYNIKYQIVLSKCDLLNTKDLAIKIQIINQDILPFKNLEKPLI 266
|
|
| UNIPROTKB|Q8IL49 PF14_0400 "GTP binding protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
|---|
Score = 320 (117.7 bits), Expect = 1.5e-27, P = 1.5e-27
Identities = 66/172 (38%), Positives = 102/172 (59%)
Query: 74 KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF 133
++ + A + P P PEIAF GRSN GKS+++N L + + S PG T+ I+F
Sbjct: 95 RMVLYKTAIQVNELPLPKYPEIAFIGRSNCGKSTLINELCGRTNKAKVSKIPGCTKEIHF 154
Query: 134 FKLGTK--LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR 191
+K+G +CLVDLPGYG+A KEE++ W E Y+ R +LK+V +LID + G+K
Sbjct: 155 YKIGKPCLMCLVDLPGYGYAECKEELRLQWNEFTLFYLKNRKNLKKVFVLIDCRVGLKTS 214
Query: 192 DHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243
D EL+ +R KYQ+VL+K D + D+A + I + + +L +P++
Sbjct: 215 DKELLHFFDRYNIKYQIVLSKCDLLNTKDLAIKIQIINQDILPFKNLEKPLI 266
|
|
| UNIPROTKB|Q2GKS7 engB "Probable GTP-binding protein EngB" [Anaplasma phagocytophilum HZ (taxid:212042)] | Back alignment and assigned GO terms |
|---|
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 62/167 (37%), Positives = 100/167 (59%)
Query: 77 FFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL 136
F A + SFP +PE+AFAGRSNVGKSS++NA+T +TS PG T+ INF+
Sbjct: 6 FVAGVQDRKSFPDFGVPEVAFAGRSNVGKSSLINAITNNKKNAKTSSNPGSTRQINFYLN 65
Query: 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI 196
+ LVDLPGYG++ A +E + ++++ Y+ +R +L+R+ LLID++ G+K D + +
Sbjct: 66 KGIVALVDLPGYGYSKASKEATRGYLDVMEHYLMSREALQRLVLLIDSRIGLKEIDRDFL 125
Query: 197 SLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243
+E Y +VLTK D + + ++ + N L+QP++
Sbjct: 126 CWLEEHGIYYSIVLTKADKLSEQALGSMVSFVQNQAQGGNFLLQPIM 172
|
|
| TIGR_CMR|APH_0421 APH_0421 "putative GTP-binding protein EngB" [Anaplasma phagocytophilum HZ (taxid:212042)] | Back alignment and assigned GO terms |
|---|
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 62/167 (37%), Positives = 100/167 (59%)
Query: 77 FFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL 136
F A + SFP +PE+AFAGRSNVGKSS++NA+T +TS PG T+ INF+
Sbjct: 6 FVAGVQDRKSFPDFGVPEVAFAGRSNVGKSSLINAITNNKKNAKTSSNPGSTRQINFYLN 65
Query: 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI 196
+ LVDLPGYG++ A +E + ++++ Y+ +R +L+R+ LLID++ G+K D + +
Sbjct: 66 KGIVALVDLPGYGYSKASKEATRGYLDVMEHYLMSREALQRLVLLIDSRIGLKEIDRDFL 125
Query: 197 SLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243
+E Y +VLTK D + + ++ + N L+QP++
Sbjct: 126 CWLEEHGIYYSIVLTKADKLSEQALGSMVSFVQNQAQGGNFLLQPIM 172
|
|
| UNIPROTKB|Q748I9 engB "Probable GTP-binding protein EngB" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 65/157 (41%), Positives = 88/157 (56%)
Query: 76 EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 135
EF + +P DL EIAF GRSNVGKSS++N L + +VRTS PG TQ INFF+
Sbjct: 8 EFVTSGTRPEHYPPGDLLEIAFVGRSNVGKSSLINVLVNRKSLVRTSSTPGRTQLINFFR 67
Query: 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 195
+ L LVDLPGYGFA EVK W +V+ Y++ R L V L++D + D +
Sbjct: 68 VNGSLMLVDLPGYGFARVPPEVKRQWGPMVETYLAGRSCLACVVLIVDVRRTPAEEDRLM 127
Query: 196 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 232
+ + VV+TK D V + A++A I +L
Sbjct: 128 LQWLRAYDIPVLVVITKCDKVSKNERAKQASLISRTL 164
|
|
| TIGR_CMR|GSU_3013 GSU_3013 "GTP-binding protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 65/157 (41%), Positives = 88/157 (56%)
Query: 76 EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 135
EF + +P DL EIAF GRSNVGKSS++N L + +VRTS PG TQ INFF+
Sbjct: 8 EFVTSGTRPEHYPPGDLLEIAFVGRSNVGKSSLINVLVNRKSLVRTSSTPGRTQLINFFR 67
Query: 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 195
+ L LVDLPGYGFA EVK W +V+ Y++ R L V L++D + D +
Sbjct: 68 VNGSLMLVDLPGYGFARVPPEVKRQWGPMVETYLAGRSCLACVVLIVDVRRTPAEEDRLM 127
Query: 196 ISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 232
+ + VV+TK D V + A++A I +L
Sbjct: 128 LQWLRAYDIPVLVVITKCDKVSKNERAKQASLISRTL 164
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 243 | |||
| PRK00454 | 196 | PRK00454, engB, GTP-binding protein YsxC; Reviewed | 8e-61 | |
| cd01876 | 170 | cd01876, YihA_EngB, YihA (EngB) GTPase family | 2e-58 | |
| TIGR03598 | 178 | TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-bi | 9e-56 | |
| COG0218 | 200 | COG0218, COG0218, Predicted GTPase [General functi | 1e-54 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 1e-21 | |
| PRK04213 | 201 | PRK04213, PRK04213, GTP-binding protein; Provision | 2e-15 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 4e-11 | |
| cd00880 | 161 | cd00880, Era_like, E | 5e-11 | |
| cd11383 | 140 | cd11383, YfjP, YfjP GTPase | 3e-09 | |
| cd01856 | 171 | cd01856, YlqF, Circularly permuted YlqF GTPase | 2e-08 | |
| COG1161 | 322 | COG1161, COG1161, Predicted GTPases [General funct | 3e-08 | |
| TIGR03918 | 391 | TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster | 7e-08 | |
| cd04163 | 168 | cd04163, Era, E | 7e-08 | |
| COG1160 | 444 | COG1160, COG1160, Predicted GTPases [General funct | 7e-08 | |
| cd01894 | 157 | cd01894, EngA1, EngA1 GTPase contains the first do | 2e-07 | |
| cd01857 | 140 | cd01857, HSR1_MMR1, A circularly permuted subfamil | 2e-07 | |
| cd00881 | 183 | cd00881, GTP_translation_factor, GTP translation f | 4e-07 | |
| PRK00093 | 435 | PRK00093, PRK00093, GTP-binding protein Der; Revie | 5e-07 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 5e-07 | |
| TIGR03594 | 429 | TIGR03594, GTPase_EngA, ribosome-associated GTPase | 6e-07 | |
| cd01895 | 174 | cd01895, EngA2, EngA2 GTPase contains the second d | 7e-07 | |
| TIGR03594 | 429 | TIGR03594, GTPase_EngA, ribosome-associated GTPase | 2e-06 | |
| cd01855 | 191 | cd01855, YqeH, Circularly permuted YqeH GTPase | 3e-06 | |
| cd01859 | 157 | cd01859, MJ1464, An uncharacterized, circularly pe | 6e-06 | |
| pfam02421 | 190 | pfam02421, FeoB_N, Ferrous iron transport protein | 8e-06 | |
| cd04171 | 170 | cd04171, SelB, SelB, the dedicated elongation fact | 9e-06 | |
| COG0370 | 653 | COG0370, FeoB, Fe2+ transport system protein B [In | 9e-06 | |
| TIGR03597 | 360 | TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase | 2e-05 | |
| TIGR00450 | 442 | TIGR00450, mnmE_trmE_thdF, tRNA modification GTPas | 2e-05 | |
| PRK00093 | 435 | PRK00093, PRK00093, GTP-binding protein Der; Revie | 3e-05 | |
| PRK00089 | 292 | PRK00089, era, GTPase Era; Reviewed | 3e-05 | |
| TIGR03596 | 276 | TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-bi | 8e-05 | |
| cd09912 | 180 | cd09912, DLP_2, Dynamin-like protein including dyn | 1e-04 | |
| cd01879 | 159 | cd01879, FeoB, Ferrous iron transport protein B (F | 1e-04 | |
| COG1159 | 298 | COG1159, Era, GTPase [General function prediction | 2e-04 | |
| cd04178 | 171 | cd04178, Nucleostemin_like, A circularly permuted | 2e-04 | |
| cd01849 | 146 | cd01849, YlqF_related_GTPase, Circularly permuted | 5e-04 | |
| cd01881 | 167 | cd01881, Obg_like, Obg-like family of GTPases cons | 5e-04 | |
| COG0486 | 454 | COG0486, ThdF, Predicted GTPase [General function | 6e-04 | |
| COG1160 | 444 | COG1160, COG1160, Predicted GTPases [General funct | 9e-04 | |
| PRK09518 | 712 | PRK09518, PRK09518, bifunctional cytidylate kinase | 9e-04 | |
| PRK09563 | 287 | PRK09563, rbgA, GTPase YlqF; Reviewed | 0.001 | |
| pfam03193 | 161 | pfam03193, DUF258, Protein of unknown function, DU | 0.001 | |
| cd01858 | 157 | cd01858, NGP_1, A novel nucleolar GTP-binding prot | 0.002 | |
| PRK05291 | 449 | PRK05291, trmE, tRNA modification GTPase TrmE; Rev | 0.002 | |
| cd04164 | 159 | cd04164, trmE, trmE is a tRNA modification GTPase | 0.002 | |
| COG1162 | 301 | COG1162, COG1162, Predicted GTPases [General funct | 0.004 | |
| TIGR00436 | 270 | TIGR00436, era, GTP-binding protein Era | 0.004 |
| >gnl|CDD|234770 PRK00454, engB, GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Score = 189 bits (483), Expect = 8e-61
Identities = 73/174 (41%), Positives = 108/174 (62%)
Query: 69 NIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT 128
+F + EF +A P D PEIAFAGRSNVGKSS++NALT + + RTS PG T
Sbjct: 1 KLFIHNAEFVTSAPKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRT 60
Query: 129 QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV 188
Q INFF++ KL LVDLPGYG+A +E K+ W++L++EY+ TR +LK V LLID++ +
Sbjct: 61 QLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPL 120
Query: 189 KPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242
K D ++I ++ +VLTK D + + ++ ++ ++LK + V
Sbjct: 121 KELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILF 174
|
Length = 196 |
| >gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 2e-58
Identities = 68/143 (47%), Positives = 95/143 (66%)
Query: 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA 153
E+AFAGRSNVGKSS++NALT + + RTS PG TQ INFF +G K LVDLPGYG+A
Sbjct: 1 EVAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFNVGDKFRLVDLPGYGYAKV 60
Query: 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKT 213
+EV++ W +L++EY+ R +LK V LLID + G P D E++ +E + +VLTK
Sbjct: 61 SKEVREKWGKLIEEYLENRENLKGVVLLIDARHGPTPIDLEMLEFLEELGIPFLIVLTKA 120
Query: 214 DTVFPIDVARRAMQIEESLKANN 236
D + ++A+ +I+E L N
Sbjct: 121 DKLKKSELAKVLKKIKEELNLFN 143
|
The YihA (EngB) subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. Length = 170 |
| >gnl|CDD|213835 TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Score = 176 bits (448), Expect = 9e-56
Identities = 66/139 (47%), Positives = 88/139 (63%)
Query: 76 EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK 135
EF +A P D PEIAFAGRSNVGKSS++NALT + + RTS PG TQ INFF+
Sbjct: 2 EFVKSAVKLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFE 61
Query: 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 195
+ LVDLPGYG+A +E K+ W++L++EY+ R +LK V LL+D + +K D E+
Sbjct: 62 VNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEM 121
Query: 196 ISLMERSQTKYQVVLTKTD 214
I + +VLTK D
Sbjct: 122 IEWLRERGIPVLIVLTKAD 140
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes [Protein synthesis, Other]. Length = 178 |
| >gnl|CDD|223296 COG0218, COG0218, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 173 bits (442), Expect = 1e-54
Identities = 78/175 (44%), Positives = 107/175 (61%)
Query: 69 NIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT 128
+ +K +F +A +P DLPEIAFAGRSNVGKSS++NALT Q + RTS PG T
Sbjct: 1 KLNYHKAKFITSAPDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRT 60
Query: 129 QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV 188
Q INFF++ +L LVDLPGYG+A +EVK+ W++L++EY+ R +LK V LLID +
Sbjct: 61 QLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPP 120
Query: 189 KPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243
K D E+I + VVLTK D + + ++ ++ E LK Q VV
Sbjct: 121 KDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVV 175
|
Length = 200 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 1e-21
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 8/122 (6%)
Query: 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ--TINFFKLGTKLCLVDLPGYGFA 151
+A GR NVGKS+++NALT V SD PG T+ + LG ++ LVD PG
Sbjct: 1 RVALVGRPNVGKSTLINALTGA-KVAIVSDYPGTTRDPILGVLGLGRQIILVDTPGLI-- 57
Query: 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS-LMERSQTKYQVVL 210
+ + E ++ + L++D G+ D E++ L + + +VL
Sbjct: 58 --EGASEGKGVEGFNRFLEAIREADLILLVVDASEGLTEDDEEILEELEKLPKKPIILVL 115
Query: 211 TK 212
K
Sbjct: 116 NK 117
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|179790 PRK04213, PRK04213, GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 2e-15
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Query: 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF-A 151
PEI F GRSNVGKS+++ LT + VR +PG+T+ N + G + L DLPG+GF +
Sbjct: 10 PEIVFVGRSNVGKSTLVRELTGKK--VRVGKRPGVTRKPNHYDWGDFI-LTDLPGFGFMS 66
Query: 152 YAKEEVKDAWEELVKEYV 169
+EV++ ++ + Y+
Sbjct: 67 GVPKEVQEKIKDEIVRYI 84
|
Length = 201 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 4e-11
Identities = 35/151 (23%), Positives = 55/151 (36%), Gaps = 16/151 (10%)
Query: 96 AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGT-----KLCLVDLPGYGF 150
GR VGKSS+LNAL V SD PG T+ + + KL LVD PG
Sbjct: 1 VVVGRGGVGKSSLLNALLGGE-VGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGL-- 57
Query: 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID-TKWGVKPR-DHELISLMERSQTKYQV 208
+E E + + L + L++D T + ++ + + +
Sbjct: 58 ----DEFGGLGREELARLLLRGADL--ILLVVDSTDRESEEDAKLLILRRLRKEGIPIIL 111
Query: 209 VLTKTDTVFPIDVARRAMQIEESLKANNSLV 239
V K D + +V E + +
Sbjct: 112 VGNKIDLLEEREVEELLRLEELAKILGVPVF 142
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 5e-11
Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 18/126 (14%)
Query: 96 AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPGY--G 149
A GR NVGKSS+LNAL Q V S PG T+ + L+D PG
Sbjct: 1 AIFGRPNVGKSSLLNALLGQN-VGIVSPIPGTTRDPVRKEWELLPLGPVVLIDTPGLDEE 59
Query: 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL-ISLMERSQTKYQV 208
+E V++A + R L V L++D+ + P + E + L+ +
Sbjct: 60 GGLGRERVEEARQVA------DRADL--VLLVVDS--DLTPVEEEAKLGLLRERGKPVLL 109
Query: 209 VLTKTD 214
VL K D
Sbjct: 110 VLNKID 115
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|206743 cd11383, YfjP, YfjP GTPase | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 3e-09
Identities = 36/140 (25%), Positives = 53/140 (37%), Gaps = 14/140 (10%)
Query: 96 AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTK---LCLVDLPGYGFAY 152
G++ GKSS+ NAL V D+ T+ + T L L+DLPG G
Sbjct: 1 GLMGKTGAGKSSLCNALFGT-EVAAVGDRRPTTRAAQAYVWQTGGDGLVLLDLPGVGERG 59
Query: 153 AKEEVKDAW-EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL-MERSQTKYQVVL 210
+D EEL + + V L+D DH+ L + VL
Sbjct: 60 ----RRDREYEELYRRLLPE---ADLVLWLLDADDRALAADHDFYLLPLAGHDAPLLFVL 112
Query: 211 TKTDTVFPIDVARRAMQIEE 230
+ D V + AR ++E
Sbjct: 113 NQVDPVLAV-SARTGWGLDE 131
|
The Era (E. coli Ras-like protein)-like YfjP subfamily includes several uncharacterized bacterial GTPases that are similar to Era. They generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. Length = 140 |
| >gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-08
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 102 NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
NVGKS+++N L + V + +KPG+T+ + ++G + L+D PG
Sbjct: 125 NVGKSTLINRLRGK-KVAKVGNKPGVTRGQQWIRIGPNIELLDTPG 169
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in all eukaryotes as well as a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga). Length = 171 |
| >gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-08
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 99 GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 150
G NVGKS+++N L + V +TS++PG T+ I + KL + L+D PG
Sbjct: 139 GYPNVGKSTLINRLLGK-KVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIP 189
|
Length = 322 |
| >gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 7e-08
Identities = 42/146 (28%), Positives = 60/146 (41%), Gaps = 23/146 (15%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-----QTINFFKLGTKLCLVDLPGYG 149
I GR N GKSS++NALT Q + SD PG T + + LG + L+D G
Sbjct: 9 IGIFGRRNAGKSSLINALTGQ-DIAIVSDVPGTTTDPVYKAMELLPLGPVV-LIDTAG-- 64
Query: 150 FAYAKEEVKDAWE--ELVKEYVSTRVSLKR---VCLLIDTKWGVKPRDHELISLMERSQT 204
+ D E EL E TR L + L++D G + ELI ++ +
Sbjct: 65 -------LDDEGELGELRVE--KTREVLDKTDLALLVVDAGVGPGEYELELIEELKERKI 115
Query: 205 KYQVVLTKTDTVFPIDVARRAMQIEE 230
Y VV+ K D + +
Sbjct: 116 PYIVVINKIDLGEESAELEKLEKKFG 141
|
This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391 |
| >gnl|CDD|206726 cd04163, Era, E | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 7e-08
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 21/131 (16%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG------TKLCLVDLPGY 148
+A GR NVGKS++LNAL Q + S KP T+ G ++ VD PG
Sbjct: 6 VAIIGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRI---RGIYTDDDAQIIFVDTPGI 61
Query: 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKR---VCLLIDTKWGVKPRDHELISLMERSQTK 205
+ ++ E +VK S +LK V ++D + D ++ L+++S+T
Sbjct: 62 ---HKPKKKLG--ERMVKAAWS---ALKDVDLVLFVVDASEWIGEGDEFILELLKKSKTP 113
Query: 206 YQVVLTKTDTV 216
+VL K D V
Sbjct: 114 VILVLNKIDLV 124
|
coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168 |
| >gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 7e-08
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 20/132 (15%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR---TSDKPGLTQTINFFK---LGTKLCLVDL 145
P +A GR NVGKS++ N LT + R SD PG+T+ + LG + L+D
Sbjct: 3 TPVVAIVGRPNVGKSTLFNRLTGR----RIAIVSDTPGVTRDRIYGDAEWLGREFILIDT 58
Query: 146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKR---VCLLIDTKWGVKPRDHELISLMERS 202
G + +D +EL++E ++++ + ++D + G+ P D E+ ++ RS
Sbjct: 59 GGL-----DDGDEDELQELIRE--QALIAIEEADVILFVVDGREGITPADEEIAKILRRS 111
Query: 203 QTKYQVVLTKTD 214
+ +V+ K D
Sbjct: 112 KKPVILVVNKID 123
|
Length = 444 |
| >gnl|CDD|206681 cd01894, EngA1, EngA1 GTPase contains the first domain of EngA | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 2e-07
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 21/125 (16%)
Query: 99 GRSNVGKSSMLNALTRQWGVVR---TSDKPGLT---QTINFFKLGTKLCLVDLPGYGFAY 152
GR NVGKS++ N LT + R SD PG+T + G + L+D G
Sbjct: 4 GRPNVGKSTLFNRLTGR----RDAIVSDTPGVTRDRKYGEAEWGGREFILIDTGGI---- 55
Query: 153 AKEEVKDAWEELVKEYVSTRVSLKR---VCLLIDTKWGVKPRDHELISLMERSQTKYQVV 209
E + + ++E ++++ + ++D + G+ P D E+ + +S+ +V
Sbjct: 56 --EPDDEGISKEIRE--QAEIAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILV 111
Query: 210 LTKTD 214
+ K D
Sbjct: 112 VNKID 116
|
This EngA1 subfamily CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 157 |
| >gnl|CDD|206750 cd01857, HSR1_MMR1, A circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-07
Identities = 26/64 (40%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLGTKLCLV 143
F A + I G NVGKSS++NAL V S PG T QTI L + L
Sbjct: 77 FSALNEATIGLVGYPNVGKSSLINALVGS-KKVSVSSTPGKTKHFQTIF---LEPGITLC 132
Query: 144 DLPG 147
D PG
Sbjct: 133 DCPG 136
|
Human HSR1 is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N-terminus. Length = 140 |
| >gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 4e-07
Identities = 31/156 (19%), Positives = 54/156 (34%), Gaps = 30/156 (19%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVV--------RTSD------KPGLTQTINFFKLGTKL 140
+ G + GK+++ +L Q G + D + G+T +
Sbjct: 2 VGVIGHVDHGKTTLTGSLLYQTGAIDRRGTRKETFLDTLKEERERGITIKTGVVEFEWPK 61
Query: 141 C---LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS 197
+D PG+ E+ KE V L++D GV+P+ E ++
Sbjct: 62 RRINFIDTPGH-------------EDFSKETVRGLAQADGALLVVDANEGVEPQTREHLN 108
Query: 198 LMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 233
+ V + K D V D +I+E LK
Sbjct: 109 IALAGGLPIIVAVNKIDRVGEEDFDEVLREIKELLK 144
|
The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183 |
| >gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 5e-07
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 25/134 (18%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR---TSDKPGLT-----QTINFFKLGTKLCLV 143
P +A GR NVGKS++ N LT + R +D PG+T + LG + L+
Sbjct: 1 KPVVAIVGRPNVGKSTLFNRLTGK----RDAIVADTPGVTRDRIYGEAEW--LGREFILI 54
Query: 144 DLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKR---VCLLIDTKWGVKPRDHELISLME 200
D G E D +E+ ++E ++++ + ++D + G+ P D E+ ++
Sbjct: 55 DTGGI------EPDDDGFEKQIRE--QAELAIEEADVILFVVDGRAGLTPADEEIAKILR 106
Query: 201 RSQTKYQVVLTKTD 214
+S +V+ K D
Sbjct: 107 KSNKPVILVVNKVD 120
|
Length = 435 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 5e-07
Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 21/132 (15%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKLG---TKLCLVDLPGYG 149
I G NVGKS++LN L + T KPG T+ + K L+D G
Sbjct: 4 IVIVGDPNVGKSTLLNRLLGNKISI-TEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG-- 60
Query: 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVC----LLIDTKWGVKPRDHELISLMERSQTK 205
++ ++ + + Y S RV L++D + ++ + E+I E S
Sbjct: 61 --------QEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE-SGVP 111
Query: 206 YQVVLTKTDTVF 217
+V K D
Sbjct: 112 IILVGNKIDLRD 123
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 6e-07
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 25/131 (19%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVR---TSDKPGLT-----QTINFFKLGTKLCLVDLP 146
+A GR NVGKS++ N LT + R SD PG+T + G + L+D
Sbjct: 2 VAIVGRPNVGKSTLFNRLTGK----RDAIVSDTPGVTRDRKYGDAEW--GGREFILIDTG 55
Query: 147 GYGFAYAKEEVKDAWEELVKEYVSTRVSLK---RVCLLIDTKWGVKPRDHELISLMERSQ 203
G EE D ++ ++E ++++ + ++D + G+ P D E+ + +S
Sbjct: 56 GI------EEDDDGLDKQIRE--QAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSG 107
Query: 204 TKYQVVLTKTD 214
+V K D
Sbjct: 108 KPVILVANKID 118
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429 |
| >gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 7e-07
Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVDLPG 147
IA GR NVGKSS+LNAL + V+ SD G T+ + F G K L+D G
Sbjct: 5 IAIIGRPNVGKSSLLNALLGEERVI-VSDIAGTTRDSIDVPFEYDGQKYTLIDTAG 59
|
This EngA2 subfamily CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 174 |
| >gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 2e-06
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 82 KVSSSFPAPDLPE--------IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---T 130
+ P + E IA GR NVGKS+++NAL + V+ SD G T+
Sbjct: 154 AILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVI-VSDIAGTTRDSID 212
Query: 131 INFFKLGTKLCLVD 144
I F + G K L+D
Sbjct: 213 IPFERNGKKYTLID 226
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429 |
| >gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 3e-06
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 97 FAGRSNVGKSSMLNALTRQWGVVR----------TSDKPGLTQTINFFKLGTKLCLVDLP 146
G +NVGKS+++NAL + G S PG T + LG L D P
Sbjct: 130 VVGATNVGKSTLINALLKSNGGKVQAQALVQRLTVSPIPGTTLGLIKIPLGEGKKLYDTP 189
Query: 147 GY 148
G
Sbjct: 190 GI 191
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191 |
| >gnl|CDD|206752 cd01859, MJ1464, An uncharacterized, circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 6e-06
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFKLGTKLCLVDLPG 147
+ G VGKSS++NAL + TS PG T+ I ++ +K+ L+D PG
Sbjct: 102 VGVVGYPKVGKSSIINALKGR-HSASTSPIPGSPGYTKGIQLVRIDSKIYLIDTPG 156
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. Length = 157 |
| >gnl|CDD|217025 pfam02421, FeoB_N, Ferrous iron transport protein B | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 8e-06
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 11/70 (15%)
Query: 95 IAFAGRSNVGKSSMLNALT--RQWGVVRTSDKPGLTQTIN--FFKL-GTKLCLVDLPG-Y 148
IA G NVGK+++ NALT RQ + PG+T FK G ++ +VDLPG Y
Sbjct: 3 IALVGNPNVGKTTLFNALTGARQ----HVGNWPGVTVEKKEGTFKYKGYEIEIVDLPGTY 58
Query: 149 GF-AYAKEEV 157
Y++EE
Sbjct: 59 SLSPYSEEEK 68
|
Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 190 |
| >gnl|CDD|206734 cd04171, SelB, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 9e-06
Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 23/148 (15%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTINF----FKLGTKLCLVDLPGYG 149
I AG + GK++++ ALT +K G+T + F G +L +D+PG+
Sbjct: 2 IGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPDGKRLGFIDVPGH- 60
Query: 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP--RDH-ELISLMERSQTKY 206
E+ VK ++ + V L++ G+ P R+H E++ L+ +
Sbjct: 61 ------------EKFVKNMLAGAGGIDAVLLVVAADEGIMPQTREHLEILELLGIKKG-- 106
Query: 207 QVVLTKTDTVFPIDVARRAMQIEESLKA 234
VVLTK D V + +I E L
Sbjct: 107 LVVLTKADLVDEDRLELVEEEILELLAG 134
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains bacterial SelBs, as well as, one from archaea. Length = 170 |
| >gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 9e-06
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 93 PEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPGLT---QTINFFKLGTKLCLVDLPG- 147
+A G NVGK+++ NALT G + + PG+T + G ++ +VDLPG
Sbjct: 4 LTVALVGNPNVGKTTLFNALT---GANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGT 60
Query: 148 YGFAYAKEEVKDAWEELVKE 167
Y E+ K A + L++
Sbjct: 61 YSLTAYSEDEKVARDFLLEG 80
|
Length = 653 |
| >gnl|CDD|213834 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 97 FAGRSNVGKSSMLNALTRQWG----VVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148
G +NVGKSS++N L +Q V+ TS PG T + L L D PG
Sbjct: 159 VVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGI 214
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli [Protein synthesis, Other]. Length = 360 |
| >gnl|CDD|232980 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-05
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 22/150 (14%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFA 151
+A G NVGKSS+LNAL +Q + SD G T+ + +F G + L+D G
Sbjct: 206 LAIVGSPNVGKSSLLNALLKQDRAI-VSDIKGTTRDVVEGDFELNGILIKLLDTAGI--- 261
Query: 152 YAKEEVKDAWEELVKEYVSTRVSLKR---VCLLIDTKWGVKPRDHELISLMERSQTKYQV 208
E D E L E + ++K+ V ++D + D LI + +S+ + +
Sbjct: 262 ---REHADFVERLGIE--KSFKAIKQADLVIYVLDASQPLTKDD-FLIIDLNKSKKPFIL 315
Query: 209 VLTKTDTVFPIDVARRAMQIEESLKANNSL 238
VL K ID+ +++ S K NS
Sbjct: 316 VLNK------IDLKINSLEFFVSSKVLNSS 339
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer [Protein synthesis, tRNA and rRNA base modification]. Length = 442 |
| >gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 3e-05
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 82 KVSSSFPAPDLPE-------IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TI 131
+ P + + IA GR NVGKSS++NAL + V+ SD G T+
Sbjct: 156 AILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVI-VSDIAGTTRDSIDT 214
Query: 132 NFFKLGTKLCLVD 144
F + G K L+D
Sbjct: 215 PFERDGQKYTLID 227
|
Length = 435 |
| >gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 3e-05
Identities = 34/146 (23%), Positives = 53/146 (36%), Gaps = 43/146 (29%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------------GLTQTINFFKLGTKLC 141
+A GR NVGKS++LNAL Q + S KP Q I
Sbjct: 8 VAIVGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRHRIRGIVTEDDAQII---------- 56
Query: 142 LVDLPGYGFA-------YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE 194
VD PG + + ++ V L V ++D + P D
Sbjct: 57 FVDTPGI-HKPKRALNRAMNKAAWSSLKD---------VDL--VLFVVDADEKIGPGDEF 104
Query: 195 LISLMERSQTKYQVVLTKTDTVFPID 220
++ +++ +T +VL K D V +
Sbjct: 105 ILEKLKKVKTPVILVLNKIDLVKDKE 130
|
Length = 292 |
| >gnl|CDD|213833 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 8e-05
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 102 NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
NVGKS+++N L + V + ++PG+T+ + KL L L+D PG
Sbjct: 128 NVGKSTLINRLAGK-KVAKVGNRPGVTKGQQWIKLSDGLELLDTPG 172
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members [Protein synthesis, Other]. Length = 276 |
| >gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 1e-04
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
+A G + GKS++LNAL + GV T+ T+ + L + LVD PG
Sbjct: 3 LAVVGEFSAGKSTLLNALLGEEVLPTGVTPTTAVI----TVLRYGLLKGVVLVDTPG 55
|
The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180 |
| >gnl|CDD|206667 cd01879, FeoB, Ferrous iron transport protein B (FeoB) family | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 1e-04
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 11/68 (16%)
Query: 96 AFAGRSNVGKSSMLNALT--RQWGVVRTSDKPGLT--QTINFFKLGTKLC-LVDLPG-YG 149
A G NVGK+++ NALT RQ + + PG+T + FKLG K +VDLPG Y
Sbjct: 1 ALVGNPNVGKTTLFNALTGARQ----KVGNWPGVTVEKKEGEFKLGGKEIEIVDLPGTYS 56
Query: 150 F-AYAKEE 156
Y+++E
Sbjct: 57 LTPYSEDE 64
|
Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 159 |
| >gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT----QTINFFKLGTKLCLVDLPGYGF 150
+A GR NVGKS++LNAL Q + S KP T + I ++ VD PG
Sbjct: 9 VAIIGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGI-- 64
Query: 151 AYAKEEVKDAWEE-LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVV 209
+ K A E + K S + + ++D G P D ++ +++++T +V
Sbjct: 65 ----HKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILV 120
Query: 210 LTKTDTVFPIDVARRAMQIEESLK 233
+ K D V P +++ LK
Sbjct: 121 VNKIDKVKP---KTVLLKLIAFLK 141
|
Length = 298 |
| >gnl|CDD|206753 cd04178, Nucleostemin_like, A circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 2e-04
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 102 NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148
NVGKSS++N+L R PG+T+++ L + L+D PG
Sbjct: 126 NVGKSSVINSLKRS-RACNVGATPGVTKSMQEVHLDKHVKLLDSPGV 171
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the protein. Length = 171 |
| >gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related GTPases | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 5e-04
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
+ G NVGKSS +NAL ++ ++ PG T+ KL ++ L D PG
Sbjct: 94 VGVVGLPNVGKSSFINALLNKFK-LKVGSIPGTTKLQQDVKLDKEIYLYDTPG 145
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. Length = 146 |
| >gnl|CDD|206668 cd01881, Obg_like, Obg-like family of GTPases consist of five subfamilies: Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 5e-04
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 96 AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF----FKLGTKLCLVDLPG 147
G NVGKS++L+ALT V + P T N F G + ++DLPG
Sbjct: 1 GLVGLPNVGKSTLLSALTS--AKVEIASYPFTTLEPNVGVFEFGDGVDIQIIDLPG 54
|
The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to form one major branch of the Obg family and the Ygr210 and YchF subfamilies form another branch. No GEFs, GAPs, or GDIs for Obg have been identified. Length = 167 |
| >gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 6e-04
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
+ GR NVGKSS+LNAL +
Sbjct: 220 VVIIGRPNVGKSSLLNALLGR 240
|
Length = 454 |
| >gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 9e-04
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVD 144
IA GR NVGKSS++NA+ + V+ SD G T+ I F + G K L+D
Sbjct: 181 IAIIGRPNVGKSSLINAILGEERVI-VSDIAGTTRDSIDIEFERDGRKYVLID 232
|
Length = 444 |
| >gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 9e-04
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 52 LDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPD-LPEIAFAGRSNVGKSSMLN 110
L P+ S+ R ++ L+ A+ +S F P L +A GR NVGKSS+LN
Sbjct: 410 LGE-PYPISAMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLN 468
Query: 111 ALTRQ 115
LT +
Sbjct: 469 QLTHE 473
|
Length = 712 |
| >gnl|CDD|236570 PRK09563, rbgA, GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.001
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 102 NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
NVGKS+++N L + + +T ++PG+T+ + KLG L L+D PG
Sbjct: 131 NVGKSTLINRLAGK-KIAKTGNRPGVTKAQQWIKLGKGLELLDTPG 175
|
Length = 287 |
| >gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258 | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.001
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 95 IAFAGRSNVGKSSMLNALT---RQW-GVVRTSDKPG--LTQTINFFKLGTKLCLVDLPG- 147
AG+S VGKS++LNAL G + G T + F L L+D PG
Sbjct: 38 SVLAGQSGVGKSTLLNALLPELDLRTGEISEKLGRGRHTTTHVELFPLPGGGLLIDTPGF 97
Query: 148 --YGFAY-AKEEVKDAWEELVK 166
G + EE+ + + E +
Sbjct: 98 RELGLWHLDPEELAEYFPEFRE 119
|
Length = 161 |
| >gnl|CDD|206751 cd01858, NGP_1, A novel nucleolar GTP-binding protein, circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.002
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
+ F G NVGKSS++N L R V + + PG T+ + L ++ L+D PG
Sbjct: 105 VGFIGYPNVGKSSVINTL-RSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPG 156
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. Length = 157 |
| >gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 0.002
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
+ AGR NVGKSS+LNAL +
Sbjct: 218 VVIAGRPNVGKSSLLNALLGE 238
|
Length = 449 |
| >gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 0.002
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
+ AG+ NVGKSS+LNAL +
Sbjct: 6 VVIAGKPNVGKSSLLNALAGR 26
|
TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159 |
| >gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.004
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 96 AFAGRSNVGKSSMLNAL----TRQWGVVRTSDKPG--LTQTINFFKLGTKLCLVDLPGY- 148
G+S VGKS+++NAL ++ G + G T + F L ++D PG+
Sbjct: 168 VLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFR 227
Query: 149 --GFAYA-KEEVKDAWEEL 164
G A+ E++ A+ E
Sbjct: 228 SLGLAHLEPEDLVQAFPEF 246
|
Length = 301 |
| >gnl|CDD|129528 TIGR00436, era, GTP-binding protein Era | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.004
Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 14/132 (10%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT----QTINFFKLGTKLCLVDLPGYGF 150
+A GR NVGKS++LN L Q + TS K T I +++ +D PG+
Sbjct: 3 VAILGRPNVGKSTLLNQLHGQ-KISITSPKAQTTRNRISGI-HTTGASQIIFIDTPGF-- 58
Query: 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID-TKWGVKPRDHELISLMERSQTKYQVV 209
E+ ++KE S + + ++D +W +++ ++ + +
Sbjct: 59 ---HEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQW--NGDGEFVLTKLQNLKRPVVLT 113
Query: 210 LTKTDTVFPIDV 221
K D F +
Sbjct: 114 RNKLDNKFKDKL 125
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein [Protein synthesis, Other]. Length = 270 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 243 | |||
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.97 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.97 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.93 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.93 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.93 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.92 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.92 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.92 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.91 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.91 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.9 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.9 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.88 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.87 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.86 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.86 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.85 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.85 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.84 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.83 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.83 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.83 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.83 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.83 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.82 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.82 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.82 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.82 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.81 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.81 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.81 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.81 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.81 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.81 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.8 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.8 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.8 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.8 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.8 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.79 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.79 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.79 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.79 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.79 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.78 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.78 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.78 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.77 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.77 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.77 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.76 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.75 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.75 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.74 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.74 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.74 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.74 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.74 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.73 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.73 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.73 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 99.72 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.71 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.71 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.71 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.71 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.71 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.71 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.7 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.7 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.7 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.7 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.69 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.69 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 99.69 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.69 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.69 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.68 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.68 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.68 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.68 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.68 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.68 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.68 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.67 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.67 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.67 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.67 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.67 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.67 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.67 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.67 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.67 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.67 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.66 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.66 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.66 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.66 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.66 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.66 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.66 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.66 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.66 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.66 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.66 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.66 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 99.65 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.65 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.65 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.65 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.65 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.65 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 99.65 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.65 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.65 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.64 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.64 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.64 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.64 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.64 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.64 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.64 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.64 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.64 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.64 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.64 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.64 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.64 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.64 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.64 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.64 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.63 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.63 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.63 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.63 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.63 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.63 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.63 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.63 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.63 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.63 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.62 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.62 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.62 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.62 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.62 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.62 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.62 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.62 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.62 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.61 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.61 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.61 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.61 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.61 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.61 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.61 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.61 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.61 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.61 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.6 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.6 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.6 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.6 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.6 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.6 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.6 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.59 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.59 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.59 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.59 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.59 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.59 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.59 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.59 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.59 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.59 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.59 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.58 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.58 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.58 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.58 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.57 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.57 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.57 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 99.57 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.57 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.57 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.57 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.57 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.56 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.56 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.56 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.56 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.56 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.56 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.56 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.56 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.56 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.56 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.55 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.55 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 99.55 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.55 | |
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 99.55 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.54 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.54 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.54 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.54 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.54 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.54 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.54 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.53 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.53 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.53 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.53 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.52 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.52 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.52 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.52 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.52 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.51 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.51 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.51 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.51 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 99.51 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.51 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.5 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.5 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.5 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.5 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 99.5 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 99.49 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.49 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.49 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 99.49 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.49 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.48 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.48 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.48 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 99.47 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.47 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 99.47 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.47 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.46 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.46 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 99.46 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.46 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 99.44 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 99.44 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.43 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 99.42 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 99.42 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.41 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 99.41 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.41 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 99.41 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.38 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.38 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.37 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.37 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.36 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 99.36 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.35 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.35 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.33 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 99.33 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.33 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 99.33 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 99.32 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.32 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.31 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 99.3 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 99.3 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 99.3 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 99.29 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.29 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 99.28 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 99.27 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 99.26 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.25 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 99.25 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.25 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 99.25 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.25 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 99.24 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 99.24 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.23 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.23 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 99.22 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 99.21 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.21 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 99.21 | |
| PRK13768 | 253 | GTPase; Provisional | 99.21 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.19 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 99.19 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 99.18 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 99.18 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 99.17 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 99.15 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 99.15 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 99.14 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 99.14 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.14 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 99.13 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.12 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.11 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.1 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 99.09 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 99.09 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 99.08 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 99.06 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.05 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.03 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 99.02 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 98.99 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.97 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.97 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.96 | |
| KOG0460 | 449 | consensus Mitochondrial translation elongation fac | 98.96 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 98.96 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 98.95 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.94 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 98.94 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 98.92 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 98.92 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 98.92 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 98.91 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.89 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 98.87 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.85 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 98.85 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 98.84 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 98.83 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 98.8 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 98.8 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 98.8 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 98.79 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 98.78 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 98.75 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.74 | |
| KOG1143 | 591 | consensus Predicted translation elongation factor | 98.72 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 98.69 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 98.68 | |
| KOG0467 | 887 | consensus Translation elongation factor 2/ribosome | 98.63 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 98.56 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.56 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 98.52 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 98.5 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 98.48 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.47 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 98.46 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 98.44 | |
| KOG0464 | 753 | consensus Elongation factor G [Translation, riboso | 98.44 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.43 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.41 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 98.41 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.41 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 98.4 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 98.39 | |
| KOG0463 | 641 | consensus GTP-binding protein GP-1 [General functi | 98.38 | |
| PTZ00099 | 176 | rab6; Provisional | 98.37 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 98.34 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 98.34 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.31 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.28 | |
| KOG0465 | 721 | consensus Mitochondrial elongation factor [Transla | 98.28 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.27 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.26 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 98.25 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.23 | |
| KOG2743 | 391 | consensus Cobalamin synthesis protein [Coenzyme tr | 98.23 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 98.22 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 98.21 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 98.2 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 98.2 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.18 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 98.13 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 98.1 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 98.05 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 98.04 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 98.03 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 98.02 | |
| KOG1534 | 273 | consensus Putative transcription factor FET5 [Tran | 98.0 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.0 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.0 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 97.99 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 97.99 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 97.98 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.97 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.95 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.94 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 97.91 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 97.89 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 97.86 | |
| KOG0096 | 216 | consensus GTPase Ran/TC4/GSP1 (nuclear protein tra | 97.86 | |
| KOG1673 | 205 | consensus Ras GTPases [General function prediction | 97.86 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.84 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.83 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 97.82 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 97.82 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 97.82 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 97.78 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 97.73 | |
| KOG0446 | 657 | consensus Vacuolar sorting protein VPS1, dynamin, | 97.72 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 97.71 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 97.68 | |
| KOG3905 | 473 | consensus Dynein light intermediate chain [Cell mo | 97.66 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 97.61 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 97.61 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 97.59 | |
| KOG0469 | 842 | consensus Elongation factor 2 [Translation, riboso | 97.59 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 97.55 | |
| KOG1533 | 290 | consensus Predicted GTPase [General function predi | 97.49 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 97.48 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 97.47 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 97.46 | |
| PRK14737 | 186 | gmk guanylate kinase; Provisional | 97.39 | |
| PRK13695 | 174 | putative NTPase; Provisional | 97.38 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 97.34 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 97.32 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 97.31 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.31 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 97.3 | |
| KOG0082 | 354 | consensus G-protein alpha subunit (small G protein | 97.26 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 97.26 | |
| KOG4423 | 229 | consensus GTP-binding protein-like, RAS superfamil | 97.25 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 97.25 | |
| KOG0459 | 501 | consensus Polypeptide release factor 3 [Translatio | 97.24 | |
| cd03110 | 179 | Fer4_NifH_child This protein family's function is | 97.24 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 97.23 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 97.22 | |
| COG0194 | 191 | Gmk Guanylate kinase [Nucleotide transport and met | 97.2 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 97.19 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 97.19 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 97.18 | |
| KOG3887 | 347 | consensus Predicted small GTPase involved in nucle | 97.18 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 97.17 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.16 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 97.13 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.13 | |
| PRK14738 | 206 | gmk guanylate kinase; Provisional | 97.12 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 97.07 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 97.02 | |
| KOG4181 | 491 | consensus Uncharacterized conserved protein [Funct | 97.02 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 97.02 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 97.01 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 97.01 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 96.99 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 96.99 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 96.98 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 96.98 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 96.98 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 96.97 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 96.97 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 96.96 | |
| KOG0781 | 587 | consensus Signal recognition particle receptor, al | 96.96 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 96.96 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 96.94 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 96.93 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 96.93 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 96.92 | |
| KOG2749 | 415 | consensus mRNA cleavage and polyadenylation factor | 96.92 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 96.91 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 96.9 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 96.89 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 96.89 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 96.89 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 96.88 | |
| TIGR03574 | 249 | selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem | 96.88 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 96.88 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 96.87 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 96.87 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 96.87 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 96.86 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 96.86 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 96.85 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 96.85 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 96.85 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 96.84 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 96.84 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 96.84 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 96.84 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 96.84 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 96.84 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 96.83 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 96.83 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 96.83 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 96.82 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 96.82 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 96.81 | |
| PF02263 | 260 | GBP: Guanylate-binding protein, N-terminal domain; | 96.81 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 96.81 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 96.81 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 96.81 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 96.81 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 96.8 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 96.8 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 96.8 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 96.8 |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=227.29 Aligned_cols=194 Identities=24% Similarity=0.254 Sum_probs=152.9
Q ss_pred hccccCCCchhhHHHHHhhCCCCcceeeeecccccccCCCCCCCCCCChhHHHHHHHhhhhhhhhHHHhhcccCCCCCCC
Q 026112 12 QFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPD 91 (243)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (243)
.-.+++.+.+.+..+...| |..+++.++ .+|+.+|||++++|...........+.+....-.++..+.+...++ .
T Consensus 142 ~r~A~~~l~G~ls~~i~~l--r~~li~~~a-~vEa~IDfpeedi~~~~~~~i~~~l~~~~~~l~~ll~~~~~g~ilr--~ 216 (454)
T COG0486 142 ARIALRQLQGALSQLINEL--REALLELLA-QVEANIDFPEEDIEELVLEKIREKLEELIAELDELLATAKQGKILR--E 216 (454)
T ss_pred HHHHHHHcCCcHHHHHHHH--HHHHHHHHH-HheEeCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh--c
Confidence 3347777888889999999 889999998 8999999999987777665554444444444455666666655453 7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCcc---chHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYA---KEEVKDAWEELV 165 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~---~~~~~~~~~~~~ 165 (243)
+.+++++|+||+|||||+|+|++. +.++|+++||||||+..... |.++.++||+|++++.+ +.++++.|.
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~-d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~--- 292 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGR-DRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKK--- 292 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcC-CceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHH---
Confidence 889999999999999999999999 67999999999999976653 88999999999998642 233344443
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHH
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~ 220 (243)
..+.+|+|++|+|++.+++..+..++. +...+.|+++|+||+|+..+..
T Consensus 293 -----~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~ 341 (454)
T COG0486 293 -----AIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIE 341 (454)
T ss_pred -----HHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccc
Confidence 334499999999999877788877777 5556799999999999987543
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=197.91 Aligned_cols=161 Identities=46% Similarity=0.706 Sum_probs=145.6
Q ss_pred HHHhhcccCCCCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchH
Q 026112 77 FFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEE 156 (243)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~ 156 (243)
+..++....+.|.+..|.|+|+|++|+|||||||+|++....+++|..||.|+.++++..+..+.++|.|||+.+....+
T Consensus 9 f~~sa~~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~ 88 (200)
T COG0218 9 FITSAPDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKE 88 (200)
T ss_pred EEEecCCHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHH
Confidence 34445555678888999999999999999999999999756799999999999999999988899999999999888888
Q ss_pred HHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCC
Q 026112 157 VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN 236 (243)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~ 236 (243)
..+.|..++..|+..+....++++++|+.+++...|.++++++...++|+++|+||+|++...+..+....+++.+....
T Consensus 89 ~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~ 168 (200)
T COG0218 89 VKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPP 168 (200)
T ss_pred HHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCC
Confidence 89999999999999998899999999999999999999999999999999999999999999888888888887766544
Q ss_pred C
Q 026112 237 S 237 (243)
Q Consensus 237 ~ 237 (243)
.
T Consensus 169 ~ 169 (200)
T COG0218 169 P 169 (200)
T ss_pred C
Confidence 3
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=193.80 Aligned_cols=202 Identities=19% Similarity=0.207 Sum_probs=144.7
Q ss_pred chhhhhccccCCCchhhHHHHHhhCCCCcceeeeecccccccCCCCCCCCCCChhHHHHHHHhhhh--hhhhHHHhhc--
Q 026112 7 MSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFR--NKLEFFAAAK-- 82 (243)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-- 82 (243)
+-+++++.++|++.|+++|..+|+.+.|..+....+++ ...+|+|. ..+.+++.+..++.+ ..++.....+
T Consensus 108 ~RA~S~EgkLQVeLAqL~Y~lpRl~~~~~~l~~~Gggi--G~rGpGE~---~lE~drR~ir~rI~~i~~eLe~v~~~R~~ 182 (411)
T COG2262 108 QRARSREGKLQVELAQLRYELPRLVGSGSHLSRLGGGI--GFRGPGET---QLETDRRRIRRRIAKLKRELENVEKAREP 182 (411)
T ss_pred HHhccchhhhhhhHHhhhhhhhHhHhhhhhcccccCCC--CCCCCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999444333 46677765 667778888888743 3343333322
Q ss_pred ccCCCCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE----eCCcEEEEeCCCCCCCccchHHH
Q 026112 83 VSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVK 158 (243)
Q Consensus 83 ~~~~~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~ 158 (243)
.+..+...+.|.|+++|++|||||||+|+|++.. ..+.+..++|-|+.... .|..+.+.||-||.......
T Consensus 183 ~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~--~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~--- 257 (411)
T COG2262 183 RRKKRSRSGIPLVALVGYTNAGKSTLFNALTGAD--VYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHP--- 257 (411)
T ss_pred HhhhhcccCCCeEEEEeeccccHHHHHHHHhccC--eeccccccccccCceeEEEeCCCceEEEecCccCcccCChH---
Confidence 3445556789999999999999999999999884 66677777776654332 26789999999996532222
Q ss_pred HHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh-H---HHHHHHHhcCCcEEEEeecCCCCChHH
Q 026112 159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-H---ELISLMERSQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~---~~~~~l~~~~~p~i~v~nK~D~~~~~~ 220 (243)
+-..++..+.....+|++++|+|++++..... . .++..+....+|+++|+||+|++.+..
T Consensus 258 --LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~ 321 (411)
T COG2262 258 --LVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE 321 (411)
T ss_pred --HHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh
Confidence 22334445555567999999999988633322 2 333333344689999999999987654
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=172.47 Aligned_cols=158 Identities=42% Similarity=0.674 Sum_probs=127.6
Q ss_pred CCCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 86 SFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 86 ~~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++...++|+++|.+|+|||||+|+|++......+++.+|+|.++..+..+..+.+|||||+............|..+.
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccccCChhHHHHHHHHH
Confidence 45556788999999999999999999999743566788999999988776666899999999876544444455666777
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCC--CccccCC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN--SLVQPVV 243 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~--~~~~pi~ 243 (243)
..|+.....++++++|+|++.++...+..+++.+...+.|+++|+||+|+..+.+.......+++.+...+ ..++|++
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~S 171 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFS 171 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEE
Confidence 77777666689999999998888888888888888889999999999999988777778888888888754 2455553
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-25 Score=193.56 Aligned_cols=201 Identities=19% Similarity=0.211 Sum_probs=132.2
Q ss_pred chhhhhccccCCCchhhHHHHHhhCCCCcceeeeecccccccCCCCCCCCCCChhHHHHHHHhhhh--hhhhHHHhhc--
Q 026112 7 MSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFR--NKLEFFAAAK-- 82 (243)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-- 82 (243)
+-++++++++|+..++++|..+|+.+.+..+....++++ .++|+|+ ....+++.+..++.+ ..+..+...+
T Consensus 105 ~ra~t~e~klqv~la~l~~~l~r~~~~~~~l~~~~~~i~--~~g~gE~---~~~~~~~~i~~ri~~l~~~L~~~~~~~~~ 179 (351)
T TIGR03156 105 QRARTHEGKLQVELAQLKYLLPRLVGGWTHLSRQGGGIG--TRGPGET---QLETDRRLIRERIAQLKKELEKVEKQRER 179 (351)
T ss_pred HhccChHHHHHHHHHhccchhhhhhhhHHHHHhhcCCCC--CCCCChh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788889999999999999999987776655544444 3566654 123445555555532 2233222222
Q ss_pred ccCCCCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE----eCCcEEEEeCCCCCCCccchHHH
Q 026112 83 VSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVK 158 (243)
Q Consensus 83 ~~~~~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~ 158 (243)
.+..+.+.+.++|+++|+||||||||+|+|++.. ..+++.+|+|.|+.... .+..+.++||||+......+ ..
T Consensus 180 ~r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~--~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~-li 256 (351)
T TIGR03156 180 QRRRRKRADVPTVALVGYTNAGKSTLFNALTGAD--VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHE-LV 256 (351)
T ss_pred HHhhhcccCCcEEEEECCCCCCHHHHHHHHhCCc--eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHH-HH
Confidence 2222333567999999999999999999999983 67788899998875432 25689999999984321122 11
Q ss_pred HHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhH-HHHHHHHh---cCCcEEEEeecCCCCChH
Q 026112 159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER---SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~-~~~~~l~~---~~~p~i~v~nK~D~~~~~ 219 (243)
+.+.. .+.....+|++++|+|++++...... .+.+.+.. .+.|+++|+||+|+....
T Consensus 257 e~f~~----tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~ 317 (351)
T TIGR03156 257 AAFRA----TLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP 317 (351)
T ss_pred HHHHH----HHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH
Confidence 12222 22233459999999999876544332 23333433 368999999999998643
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.1e-25 Score=196.13 Aligned_cols=200 Identities=16% Similarity=0.209 Sum_probs=135.3
Q ss_pred chhhhhccccCCCchhhHHHHHhhCCCCcceeeeecccccccCCCCCCCCCCChhHHHHHHHhhhhh--hhhHHHhhc--
Q 026112 7 MSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRN--KLEFFAAAK-- 82 (243)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-- 82 (243)
+-++++++++|++.|+++|..+||.+.|..+..+.+++. ..+|+|. ..+.+++.+..++... .++.....+
T Consensus 113 ~rA~t~e~klqvelA~l~y~~prl~~~~~~l~~~~gg~g--~~g~ge~---~~e~d~r~i~~ri~~l~~~L~~~~~~r~~ 187 (426)
T PRK11058 113 QRARTHEGKLQVELAQLRHLATRLVRGWTHLERQKGGIG--LRGPGET---QLETDRRLLRNRIVQILSRLERVEKQREQ 187 (426)
T ss_pred HhcCChHHHHHHHHHhhhhhhhhhhccccchhhhcCCCC--CCCCChh---HhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 456788899999999999999999999988888776554 4677765 4455566666666332 222221111
Q ss_pred ccCCCCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE--e-C-CcEEEEeCCCCCCCccchHHH
Q 026112 83 VSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--L-G-TKLCLVDLPGYGFAYAKEEVK 158 (243)
Q Consensus 83 ~~~~~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~--~-~-~~~~liDTpG~~~~~~~~~~~ 158 (243)
.+..+...+.|+|+++|+||||||||+|+|++. + ..+++.+|+|.+..... . + ..+.++||||+......+ .
T Consensus 188 ~r~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~-~-~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~-l- 263 (426)
T PRK11058 188 GRRARIKADVPTVSLVGYTNAGKSTLFNRITEA-R-VYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHD-L- 263 (426)
T ss_pred HHHHhhhcCCCEEEEECCCCCCHHHHHHHHhCC-c-eeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHH-H-
Confidence 111122235689999999999999999999998 3 34788899998875432 2 3 378999999984321112 1
Q ss_pred HHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhH----HHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH----ELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~----~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
+..+ ...+.....+|++++|+|++++...... .++..+...+.|+++|+||+|+...
T Consensus 264 --ve~f-~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~ 324 (426)
T PRK11058 264 --VAAF-KATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDD 324 (426)
T ss_pred --HHHH-HHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCc
Confidence 2222 2233344569999999999876444432 3344444446899999999999753
|
|
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-24 Score=193.09 Aligned_cols=193 Identities=25% Similarity=0.273 Sum_probs=130.3
Q ss_pred hhhccccCCCchhhHHHHHhhCCCCcceeeeecccccccCCCCCCCCCCChhHHHHHHHhh---hhhhhhHHHhhcccCC
Q 026112 10 NAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENI---FRNKLEFFAAAKVSSS 86 (243)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 86 (243)
.|...++..+.+.+......| |.+++...+ .+|+.+|||+|+.+... ++.+..++ .+....+.........
T Consensus 138 ~~~~~al~~l~G~l~~~~~~~--r~~l~~~~a-~iea~iDf~ee~~~~~~---~~~i~~~i~~l~~~l~~l~~~~~~~~~ 211 (449)
T PRK05291 138 AAARLALRQLQGALSKLINEL--REELLELLA-LVEAAIDFPEEDIEFLS---DEKILEKLEELIAELEALLASARQGEI 211 (449)
T ss_pred HHHHHHHHhcCcHHHHHHHHH--HHHHHHHHH-HheEEccCCCCCccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344447778888888888888 777888776 89999999998754333 33333333 2222222322222222
Q ss_pred CCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHH
Q 026112 87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (243)
Q Consensus 87 ~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~ 163 (243)
. ..+++|+++|+||+|||||+|+|++. ....+++.+|+|++..... .+..+.+|||||+.+.. +.++..
T Consensus 212 ~--~~~~kV~ivG~~nvGKSSLln~L~~~-~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~--~~ie~~--- 283 (449)
T PRK05291 212 L--REGLKVVIAGRPNVGKSSLLNALLGE-ERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD--DEVEKI--- 283 (449)
T ss_pred h--hcCCEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc--cHHHHH---
Confidence 2 24589999999999999999999998 4567899999999875432 36789999999987532 211111
Q ss_pred HHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 164 ~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
.+...+.....+|++++|+|++.+.+..+..++.. ..+.|+++|+||+|+...
T Consensus 284 gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~ 336 (449)
T PRK05291 284 GIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGE 336 (449)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhcccc
Confidence 01112222344999999999987765555444433 447899999999999754
|
|
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-24 Score=177.54 Aligned_cols=143 Identities=25% Similarity=0.298 Sum_probs=112.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.-|+++|+||+|||||+|+|+|. +.+++|+.+.|||..... ..+..+.++||||+..+... . ...+.....
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~-KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~--l---~~~m~~~a~ 80 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHA--L---GELMNKAAR 80 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcC-ceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchH--H---HHHHHHHHH
Confidence 46899999999999999999999 899999999999986432 23678999999999875221 1 234555666
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHH-HHHHHHHHHHHHhhCCCccccCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQPVV 243 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~-~~~~~~~l~~~l~~~~~~~~pi~ 243 (243)
....++|++++|+|+.+++...+..+++.++....|+++++||+|...+.. +....+.+...... ..++|||
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f--~~ivpiS 153 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPF--KEIVPIS 153 (298)
T ss_pred HHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCc--ceEEEee
Confidence 667779999999999998999999999999987789999999999998877 44444444333222 2555654
|
|
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-24 Score=190.34 Aligned_cols=193 Identities=20% Similarity=0.199 Sum_probs=132.7
Q ss_pred hhhccccCCCchhhHHHHHhhCCCCcceeeeecccccccCCCCCCCCCCChhHHHHHHHhhhhhhhhHHHhhcccCCCCC
Q 026112 10 NAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPA 89 (243)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (243)
.|.-.++..+.+.+.....+| |..+++..+ .+|+.+|||+|+.+. .+.......+.......+... ....+
T Consensus 130 ~~~~~A~~~l~G~ls~~~~~~--r~~l~~~~a-~iea~iDf~ee~~~~---~~~~~~l~~~~~~l~~ll~~~-~~~~~-- 200 (442)
T TIGR00450 130 KVKDIALNKLAGELDQKIEAI--RKSLLQLLA-QVEVNIDYEEDDDEQ---DSLNQLLLSIIAELKDILNSY-KLEKL-- 200 (442)
T ss_pred HHHHHHHHhcCcHHHHHHHHH--HHHHHHHHH-HeeEECCcCCCCccH---HHHHHHHHHHHHHHHHHHHHH-HHHHh--
Confidence 344447778888999999999 888888888 899999999976332 122111222222222333333 22222
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
..+++|+++|+||+|||||+|+|++. ..+.+++++|||++..... .+..+.+|||||+.+.. +.++... +.
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~-~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~--~~ie~~g---i~ 274 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQ-DRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA--DFVERLG---IE 274 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCC-CCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch--hHHHHHH---HH
Confidence 35689999999999999999999998 4577899999999975433 36789999999997532 2111111 11
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
........+|++++|+|++.+.+..+. ++..+...+.|+++|+||+|+...
T Consensus 275 ~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 275 KSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN 325 (442)
T ss_pred HHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc
Confidence 222223349999999999876655554 566666568999999999999653
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=163.36 Aligned_cols=167 Identities=43% Similarity=0.655 Sum_probs=127.5
Q ss_pred hHHHhhcccCCCCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccch
Q 026112 76 EFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKE 155 (243)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~ 155 (243)
+...+....+..+.+..++|+++|.+|+|||||+|+|++......+++.+|+|+.+.++..+..+.+|||||+.......
T Consensus 8 ~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~ 87 (196)
T PRK00454 8 EFVTSAPKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSK 87 (196)
T ss_pred HHHHhhccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCc
Confidence 33334333444555678999999999999999999999973356788889999998887777889999999986543333
Q ss_pred HHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhC
Q 026112 156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN 235 (243)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~ 235 (243)
...+.|..+...++.....++++++|+|+..+....+..+.+++...+.|+++++||+|+....+.......+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~ 167 (196)
T PRK00454 88 EEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFG 167 (196)
T ss_pred hHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc
Confidence 34455666777777776677899999998877666666777778778899999999999998777766666777777665
Q ss_pred CCccccC
Q 026112 236 NSLVQPV 242 (243)
Q Consensus 236 ~~~~~pi 242 (243)
...++|+
T Consensus 168 ~~~~~~~ 174 (196)
T PRK00454 168 DDEVILF 174 (196)
T ss_pred CCceEEE
Confidence 5555565
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-24 Score=166.19 Aligned_cols=138 Identities=28% Similarity=0.284 Sum_probs=98.3
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
++|+++|.||+|||||+|+|+|.. ..++++||+|.+..... .+..+.++||||+..-...... +.....++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~--~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~e----e~v~~~~l 74 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK--QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEE----ERVARDYL 74 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS--EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHH----HHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcH----HHHHHHHH
Confidence 479999999999999999999994 78999999999986543 3678999999996442221111 22333343
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
. ....|++++|+|+++. +.+..+..++...++|+++|+||+|+..........+.+.+.++ .++.|+
T Consensus 75 ~-~~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg---~pvi~~ 141 (156)
T PF02421_consen 75 L-SEKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLG---VPVIPV 141 (156)
T ss_dssp H-HTSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT---S-EEEE
T ss_pred h-hcCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC---CCEEEE
Confidence 3 2449999999999863 66678888888999999999999998876555445566666653 455554
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-23 Score=181.58 Aligned_cols=121 Identities=27% Similarity=0.475 Sum_probs=100.8
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
|.|+++|+||+|||||+|+|++. +.+.|+++||+|||-.... .+..+.+|||+|+.... .+.+.. .+..+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~-r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~-~~~l~~---~i~~Qa~ 78 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGR-RIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGD-EDELQE---LIREQAL 78 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC-eeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCC-chHHHH---HHHHHHH
Confidence 78999999999999999999999 7899999999999976543 37789999999997532 123332 2333444
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
....+||++++|+|+..++++.|..+.++|...++|+++|+||+|....
T Consensus 79 ~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~ 127 (444)
T COG1160 79 IAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKA 127 (444)
T ss_pred HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchh
Confidence 4455599999999999999999999999999888999999999998743
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.4e-22 Score=172.06 Aligned_cols=142 Identities=27% Similarity=0.276 Sum_probs=109.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE---EEeCCcEEEEeCCCCCCCccchH-HHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEE-VKDAWEELVK 166 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~---~~~~~~~~liDTpG~~~~~~~~~-~~~~~~~~~~ 166 (243)
...+|+++|.||+|||||+|+|++. ....+++.+|||+|... ...+..+.++||+|++....-.+ ++ . ..+.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilge-eR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E-~--~Sv~ 252 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGE-ERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVE-K--YSVA 252 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccC-ceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceE-E--Eeeh
Confidence 4689999999999999999999999 55899999999999743 33588999999999875321110 00 0 0111
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh--HHHHHHHHHHHHHHhhCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP--IDVARRAMQIEESLKANN 236 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~--~~~~~~~~~l~~~l~~~~ 236 (243)
+.+.....+|++++|+|++.++..+|..+..++...+.++++|+||||+++. ....+....++..+....
T Consensus 253 rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~ 324 (444)
T COG1160 253 RTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLD 324 (444)
T ss_pred hhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhcccc
Confidence 2223333499999999999999999999999999999999999999999986 445566666666655443
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-21 Score=163.57 Aligned_cols=125 Identities=21% Similarity=0.218 Sum_probs=92.1
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
.|+++|+||||||||+|+|++. +.+.+++.++||++.... ..+..+.++||||+.+.. .... ..+......
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~-~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~--~~l~---~~~~~~~~~ 75 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQ-KISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK--HSLN---RLMMKEARS 75 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCC-cEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc--chHH---HHHHHHHHH
Confidence 6899999999999999999998 667899999999985322 125679999999987531 1111 122223333
Q ss_pred cccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHH
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRA 225 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~ 225 (243)
....+|++++|+|++...... ..+++.+...+.|+++|+||+|+..+.......
T Consensus 76 ~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~ 129 (270)
T TIGR00436 76 AIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLI 129 (270)
T ss_pred HHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHH
Confidence 344599999999998754433 567777777889999999999998665544333
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-21 Score=171.28 Aligned_cols=177 Identities=21% Similarity=0.209 Sum_probs=116.7
Q ss_pred CCcceeeeecccccccCCCCCCCCCCChhH--HHHHHHhhhhhhhhHHHhhcccCCCCCCCCCEEEEecCCCCchhHHHH
Q 026112 33 RRRPIELRRAGYNIELSAPLDNIPFSTSSE--RERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLN 110 (243)
Q Consensus 33 ~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ivG~~naGKSSLin 110 (243)
+..++++.+ .+++.+||.++.-....... ...... +......++........+ ..++.|+|+|+||+|||||+|
T Consensus 211 r~~lIe~~a-~l~a~idf~e~~~l~~~~t~~~~~~~~~-l~d~v~s~l~~~~~~e~l--q~gl~iaIvGrPNvGKSSLlN 286 (531)
T KOG1191|consen 211 RKILIEALA-GLEARIDFEEERPLEEIETVEIFIESLS-LLDDVLSHLNKADEIERL--QSGLQIAIVGRPNVGKSSLLN 286 (531)
T ss_pred HHHHHHHHh-ccceeechhhcCchhhccchhhhhHHHH-HHHHHHHHHHhhhhHHHh--hcCCeEEEEcCCCCCHHHHHH
Confidence 677888888 79999999764311111100 111111 000111222222222222 256899999999999999999
Q ss_pred HHhcccccccccCCCCceEEEEE---EEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC
Q 026112 111 ALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG 187 (243)
Q Consensus 111 ~L~~~~~~~~vs~~~gtT~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~ 187 (243)
+|+.+ +.++|++.+|||||... ...|.++.++||+|+++. ..+.++. .-+++.......+|++++|+|+...
T Consensus 287 aL~~~-drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~-~~~~iE~---~gI~rA~k~~~~advi~~vvda~~~ 361 (531)
T KOG1191|consen 287 ALSRE-DRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREE-SNDGIEA---LGIERARKRIERADVILLVVDAEES 361 (531)
T ss_pred HHhcC-CceEeCCCCCcchhhheeEeecCCeEEEEEeccccccc-cCChhHH---HhHHHHHHHHhhcCEEEEEeccccc
Confidence 99999 77999999999999743 345899999999999882 1222211 1223333334449999999999777
Q ss_pred CChhhHHHHHHHHhc------------CCcEEEEeecCCCCCh
Q 026112 188 VKPRDHELISLMERS------------QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 188 ~~~~~~~~~~~l~~~------------~~p~i~v~nK~D~~~~ 218 (243)
....+..+.+.+... ..|++++.||.|+..+
T Consensus 362 ~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 362 DTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred ccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 777777766666543 2678999999999865
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.6e-20 Score=143.82 Aligned_cols=148 Identities=45% Similarity=0.704 Sum_probs=114.7
Q ss_pred EEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccC
Q 026112 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVS 174 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (243)
|+++|.+|+|||||+|.|++.......++.+++|........+..+.++||||+............+......|+.....
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENREN 81 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhChh
Confidence 78999999999999999995434466778888888887777677999999999987544444455566667777777667
Q ss_pred ccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHh--hCCCccccC
Q 026112 175 LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK--ANNSLVQPV 242 (243)
Q Consensus 175 ~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~--~~~~~~~pi 242 (243)
++++++++|...........+.+++...+.|+++|+||+|+..+.+.......+...+. .....++|+
T Consensus 82 ~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 82 LKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 89999999988766667777888888888999999999999887777666666666664 333344454
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=139.54 Aligned_cols=113 Identities=24% Similarity=0.409 Sum_probs=86.5
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
+|+++|.+|+|||||+|+|++. +...++..+++|+...... .+..+.++||||+.+........ .....++.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~-~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~----~~~~~~~~ 75 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGK-KLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDG----KEIRKFLE 75 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS-TSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHH----HHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhcc-ccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHH----HHHHHHHH
Confidence 5899999999999999999997 5578999999999884432 35678999999998754333211 12333444
Q ss_pred cccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeec
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTK 212 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK 212 (243)
....+|++++|+|+.......+..+++.++ .+.|+++|+||
T Consensus 76 ~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 76 QISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 445599999999987754556678888887 78999999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.5e-20 Score=157.10 Aligned_cols=132 Identities=26% Similarity=0.290 Sum_probs=97.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE--E-eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--K-LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~--~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
..|+++|.||||||||+|+|++. +.+.+++.+.||++.... . .+..+.++||||+.+.. ....+ .+.....
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~-~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~--~~l~~---~~~~~~~ 79 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK--RALNR---AMNKAAW 79 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCC-ceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch--hHHHH---HHHHHHH
Confidence 47999999999999999999998 677889999998875432 2 24689999999987632 11111 1222223
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC-ChHHHHHHHHHHHH
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEE 230 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~-~~~~~~~~~~~l~~ 230 (243)
.....+|++++|+|++.++...+..+++.+...+.|+++|+||+|+. ...........+.+
T Consensus 80 ~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~ 141 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSE 141 (292)
T ss_pred HHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHh
Confidence 33345999999999988777777788888887789999999999998 44555555544444
|
|
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.5e-20 Score=161.81 Aligned_cols=141 Identities=20% Similarity=0.213 Sum_probs=95.6
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe----CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.|+|+|.||||||||+|+|++. + ..++++|+||+....... +..+.++||||+.+..... ..+...++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~-k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~------~~Lg~~~l 232 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAA-K-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEG------AGLGIRFL 232 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCC-c-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccch------hhHHHHHH
Confidence 8999999999999999999988 4 589999999998766543 2469999999997643221 01222333
Q ss_pred hcccCccEEEEEEeCCC----CCChhhHHHHHHHHhc-----CCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccc
Q 026112 170 STRVSLKRVCLLIDTKW----GVKPRDHELISLMERS-----QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 240 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~----~~~~~~~~~~~~l~~~-----~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~ 240 (243)
+....+|++++|+|++. ........+++.+... ..|+++|+||+|+....+.......+.+.+. ....++
T Consensus 233 ~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~-~~~~Vi 311 (390)
T PRK12298 233 KHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALG-WEGPVY 311 (390)
T ss_pred HHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhC-CCCCEE
Confidence 44455999999999762 1222234555655543 5899999999999876655444444443322 112455
Q ss_pred cCC
Q 026112 241 PVV 243 (243)
Q Consensus 241 pi~ 243 (243)
|||
T Consensus 312 ~IS 314 (390)
T PRK12298 312 LIS 314 (390)
T ss_pred EEE
Confidence 553
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-19 Score=151.82 Aligned_cols=133 Identities=23% Similarity=0.266 Sum_probs=96.7
Q ss_pred CCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCc--cchHHHHHHHH
Q 026112 89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAY--AKEEVKDAWEE 163 (243)
Q Consensus 89 ~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~--~~~~~~~~~~~ 163 (243)
+++.|+|++.|+||+|||||++++++.. ..+.+||+||+.+..++. +..+++|||||+.+-. ....++.. +
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~Ak--pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~q--A 240 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTAK--PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQ--A 240 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcCC--CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHH--H
Confidence 3688999999999999999999999995 789999999999988774 4589999999987642 22223221 1
Q ss_pred HHHHHHhcccCccEEEEEEeCCC--CCChh-hHHHHHHHHhc-CCcEEEEeecCCCCChHHHHHHHHHHH
Q 026112 164 LVKEYVSTRVSLKRVCLLIDTKW--GVKPR-DHELISLMERS-QTKYQVVLTKTDTVFPIDVARRAMQIE 229 (243)
Q Consensus 164 ~~~~~~~~~~~~d~v~~vvd~~~--~~~~~-~~~~~~~l~~~-~~p~i~v~nK~D~~~~~~~~~~~~~l~ 229 (243)
+ ..++.. .++|+|++|.+. +.+-+ ..++++.+... ..|+++|+||+|....+...+....+.
T Consensus 241 i--~AL~hl--~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~ 306 (346)
T COG1084 241 I--LALRHL--AGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASVL 306 (346)
T ss_pred H--HHHHHh--cCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHHHHHHHHH
Confidence 1 111221 688999999765 44333 34666666544 579999999999998766655544433
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-19 Score=158.76 Aligned_cols=142 Identities=23% Similarity=0.233 Sum_probs=100.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
...+|+++|.+|||||||+|+|++. ....+++.++||++.... ..+..+.+|||||+.+.... .. ..+.+.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~-k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~--l~---~~~~r~ 124 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGE-KLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGS--LE---KAMVRC 124 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCC-ceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCccc--HH---HHHHHH
Confidence 3469999999999999999999998 667788999999875432 23678999999998643211 11 122333
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCC--CccccCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN--SLVQPVV 243 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~--~~~~pi~ 243 (243)
.......+|++++|+|+..++...+..+++.+...+.|.++|+||+|+... . ...+.+.+.... ..++|+|
T Consensus 125 ~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-~----~~~~~~~l~~~~~~~~i~~iS 197 (339)
T PRK15494 125 AWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-Y----LNDIKAFLTENHPDSLLFPIS 197 (339)
T ss_pred HHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-c----HHHHHHHHHhcCCCcEEEEEe
Confidence 333344599999999998877777777888887778899999999998643 1 233444444332 3455654
|
|
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-19 Score=139.35 Aligned_cols=137 Identities=26% Similarity=0.347 Sum_probs=89.9
Q ss_pred EEEEecCCCCchhHHHHHHhccc-ccccccCCCCceEEEEEEE---e-CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFK---L-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~-~~~~vs~~~gtT~~~~~~~---~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.|+++|.+|+|||||+|+|++.. ........+++|.+..+.. . +..+.+|||||... +...+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-------------~~~~~ 68 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-------------FIKNM 68 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-------------HHHHH
Confidence 68999999999999999999752 1111122456676654332 2 56799999999632 11122
Q ss_pred HhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCC-cEEEEeecCCCCChHHHHHHHHHHHHHHhh---CCCccccCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDTVFPIDVARRAMQIEESLKA---NNSLVQPVV 243 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~-p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~---~~~~~~pi~ 243 (243)
......+|++++|+|+++++.....+.+..+...+. |+++|+||+|+............+.+.+.. .+.+++|++
T Consensus 69 ~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (164)
T cd04171 69 LAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVS 147 (164)
T ss_pred HhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEe
Confidence 222334999999999987655555555555555565 999999999998765444445566666654 344555553
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-19 Score=144.04 Aligned_cols=138 Identities=31% Similarity=0.504 Sum_probs=95.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCcc-chHHHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA-KEEVKDAWEELVKEYV 169 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~-~~~~~~~~~~~~~~~~ 169 (243)
..++|+++|.+|+|||||+|+|++.. ..++..+|+|++......+ .+.+|||||++.... .....+.+......|+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~--~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK--VRVGKRPGVTRKPNHYDWG-DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC--CccCCCCceeeCceEEeec-ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 46799999999999999999999873 4577788999887665545 699999999754321 1112333444444454
Q ss_pred h-cccCccEEEEEEeCCCCC-----------ChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHh
Q 026112 170 S-TRVSLKRVCLLIDTKWGV-----------KPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 233 (243)
Q Consensus 170 ~-~~~~~d~v~~vvd~~~~~-----------~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~ 233 (243)
. ....++++++|+|+.... ...+.++...+...++|+++|+||+|+.... ......+.+.++
T Consensus 85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~~~~~ 158 (201)
T PRK04213 85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR--DEVLDEIAERLG 158 (201)
T ss_pred HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH--HHHHHHHHHHhc
Confidence 3 445588999999975321 1234556677777789999999999997643 223344555544
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-19 Score=160.74 Aligned_cols=140 Identities=26% Similarity=0.266 Sum_probs=104.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++. ....+++.+|+|++.... ..+..+.++||||+..........+.+. ..+
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~--~~~ 248 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGE-ERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYS--VIR 248 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHH--HHH
Confidence 4689999999999999999999998 447789999999987432 3467899999999865322211111111 112
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 233 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~ 233 (243)
.+.....+|++++|+|+..+.+..+..++..+...+.|+++|+||+|+..+.........+...+.
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~ 314 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLP 314 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhcc
Confidence 222334489999999999998899988888888889999999999999966555555555555544
|
|
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-19 Score=155.69 Aligned_cols=142 Identities=18% Similarity=0.209 Sum_probs=95.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe----CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
...|+|+|.||||||||+|+|++. + ..++++++||.++..... +..+.++||||+.+..... ..+...
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a-~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~------~gLg~~ 229 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAA-K-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEG------AGLGHR 229 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcC-C-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCcc------ccHHHH
Confidence 568999999999999999999987 3 568999999999866432 4579999999987643221 123334
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh-----cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCcccc
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 241 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-----~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~p 241 (243)
+++..+.++++++|+|++...+..+ ..+.+.+.. ...|+++|+||+|+....+.... .++..+...+..++|
T Consensus 230 flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~--~~~~~~~~~~~~i~~ 307 (335)
T PRK12299 230 FLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREK--RAALELAALGGPVFL 307 (335)
T ss_pred HHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHH--HHHHHHHhcCCCEEE
Confidence 4445556999999999875432222 345555543 26899999999999865433221 122223333445566
Q ss_pred CC
Q 026112 242 VV 243 (243)
Q Consensus 242 i~ 243 (243)
+|
T Consensus 308 iS 309 (335)
T PRK12299 308 IS 309 (335)
T ss_pred EE
Confidence 53
|
|
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.4e-19 Score=137.12 Aligned_cols=120 Identities=24% Similarity=0.347 Sum_probs=88.7
Q ss_pred EEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcc
Q 026112 96 AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (243)
Q Consensus 96 ~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (243)
+++|.+|+|||||+|+|++. ....++..+++|++..... .+..+.+|||||+.+... .....+ ...+....
T Consensus 1 ~l~G~~~~GKssl~~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~--~~~~~~---~~~~~~~~ 74 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGR-RDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE--GISKEI---REQAELAI 74 (157)
T ss_pred CccCCCCCCHHHHHHHHhCC-cEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh--HHHHHH---HHHHHHHH
Confidence 47899999999999999998 4456778888988765433 367799999999876322 111111 11122222
Q ss_pred cCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHH
Q 026112 173 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV 221 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~ 221 (243)
..+|++++|+|+.++....+..+.+++...+.|+++|+||+|+......
T Consensus 75 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~ 123 (157)
T cd01894 75 EEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE 123 (157)
T ss_pred HhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH
Confidence 3489999999998777677777888888888999999999999876543
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.7e-19 Score=158.10 Aligned_cols=149 Identities=23% Similarity=0.238 Sum_probs=105.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++. ....+++.+|||++.... ..+..+.+|||||+..........+.+. ..+
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~--~~~ 247 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGE-ERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYS--VLR 247 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCC-CeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHH--HHH
Confidence 4579999999999999999999998 446788999999986432 2366899999999865322111111111 111
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC-ChHHHHHHHHHHHHHHhhCC-CccccC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEESLKANN-SLVQPV 242 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~-~~~~~~~~~~~l~~~l~~~~-~~~~pi 242 (243)
.+.....+|++++|+|+.++.+..+..++..+...+.|+++|+||+|+. ...........+...+...+ .+++++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 324 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFI 324 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEE
Confidence 2222334999999999999988888888888888899999999999998 44444555555555554322 344444
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-19 Score=159.17 Aligned_cols=116 Identities=17% Similarity=0.171 Sum_probs=85.9
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe----CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.|+|+|.||||||||||+|++.. ..++++|+||..++.... +..+.++||||+.+.... +..+...|+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak--~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~------~~gLg~~fL 231 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAK--PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE------GVGLGHQFL 231 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCC--CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccc------cchHHHHHH
Confidence 99999999999999999999983 567899999999876543 578999999999753221 122344455
Q ss_pred hcccCccEEEEEEeCCCC----CChhhHHHHHHHHh-----cCCcEEEEeecCCCCC
Q 026112 170 STRVSLKRVCLLIDTKWG----VKPRDHELISLMER-----SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~----~~~~~~~~~~~l~~-----~~~p~i~v~nK~D~~~ 217 (243)
+....++++++|+|++.. .......+.+.+.. ...|+++|+||+|+..
T Consensus 232 rhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~ 288 (424)
T PRK12297 232 RHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE 288 (424)
T ss_pred HHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC
Confidence 555669999999998642 11222345555543 3689999999999854
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.3e-19 Score=160.81 Aligned_cols=140 Identities=21% Similarity=0.193 Sum_probs=98.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++. ....+++.+|||++.... ..+..+.+|||||+............+..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~-~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~-- 286 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGE-ERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLR-- 286 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHH--
Confidence 4689999999999999999999998 446789999999986432 3466789999999854221110011111111
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 233 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~ 233 (243)
.......+|++++|+|++.+.+..+..++..+...+.|+++|+||+|+..+.........+.+.+.
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~ 352 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDRELA 352 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHHhcc
Confidence 111123499999999999888888888888888889999999999999865433333334444443
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.5e-19 Score=159.57 Aligned_cols=120 Identities=25% Similarity=0.343 Sum_probs=94.8
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
+|+++|.+|+|||||+|+|++. ..+.+++.+|+|++..... .+..+.+|||||+... .+.+...+......+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~-~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~--~~~~~~~~~~~~~~~-- 75 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGK-RDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEED--DDGLDKQIREQAEIA-- 75 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCc--chhHHHHHHHHHHHH--
Confidence 4899999999999999999998 5578899999999875543 3678999999998542 222222222223333
Q ss_pred cccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChH
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~ 219 (243)
...+|++++|+|+..+....+..+.+++...+.|+++|+||+|+....
T Consensus 76 -~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~ 123 (429)
T TIGR03594 76 -IEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKED 123 (429)
T ss_pred -HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccc
Confidence 344999999999998888888889999998899999999999987643
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-19 Score=141.35 Aligned_cols=123 Identities=20% Similarity=0.200 Sum_probs=82.1
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCC-cEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGT-KLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.|+++|.+|||||||+|+|++.. ..++..+++|++..... .+. .+.++||||+.+..... ..+...++
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~--~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~------~~~~~~~~ 73 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK--PKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG------KGLGHRFL 73 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC--ccccCCCccccCCcceEEEcCCCCeEEEEecCcccCccccc------CCchHHHH
Confidence 58999999999999999999873 46777788887654332 244 89999999985421111 01122222
Q ss_pred hcccCccEEEEEEeCCCC-CChhh-HHHHHHHHh-----cCCcEEEEeecCCCCChHHHHHH
Q 026112 170 STRVSLKRVCLLIDTKWG-VKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARR 224 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~-~~~~~-~~~~~~l~~-----~~~p~i~v~nK~D~~~~~~~~~~ 224 (243)
+....+|++++|+|++.+ ..... ..+.+.+.. .+.|+++|+||+|+.........
T Consensus 74 ~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~ 135 (170)
T cd01898 74 RHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFEL 135 (170)
T ss_pred HHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHH
Confidence 333348999999998865 22222 344444433 26899999999999876554443
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=136.92 Aligned_cols=125 Identities=24% Similarity=0.226 Sum_probs=83.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
|+|+++|.+|+|||||+|+|++.. ..+++++++|.++..... +..+.+|||||+.+....+. ..+.......+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--~~~~~~~~~~~ 76 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAK--PEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEER--NTIEMQAITAL 76 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCC--CccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCC--chHHHHHHHHH
Confidence 589999999999999999999984 345667888887765432 46899999999854211110 01111111111
Q ss_pred hcccCccEEEEEEeCCCCCC---hhhHHHHHHHHhc--CCcEEEEeecCCCCChHHHHH
Q 026112 170 STRVSLKRVCLLIDTKWGVK---PRDHELISLMERS--QTKYQVVLTKTDTVFPIDVAR 223 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~---~~~~~~~~~l~~~--~~p~i~v~nK~D~~~~~~~~~ 223 (243)
.. ..|++++|+|++.... .....+++.+... +.|+++|+||+|+........
T Consensus 77 ~~--~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~ 133 (168)
T cd01897 77 AH--LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE 133 (168)
T ss_pred Hh--ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH
Confidence 11 2588999999876422 2223566666554 789999999999987655443
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.5e-19 Score=159.34 Aligned_cols=141 Identities=21% Similarity=0.214 Sum_probs=94.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
...|+|+|.||||||||+|+|++. + ..++++|+||+++..... +..+.++||||+.+..... ..+...+
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~a-k-pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g------~gLg~~f 230 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAA-K-PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEG------KGLGLDF 230 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcC-C-ccccccCcccccceEEEEEECCeEEEEEECCCCccccchh------hHHHHHH
Confidence 568999999999999999999997 3 567999999998765543 5689999999986532211 1222334
Q ss_pred HhcccCccEEEEEEeCCCCC----Chhh-HHHHHHHH--------------hcCCcEEEEeecCCCCChHHHHHHHHHHH
Q 026112 169 VSTRVSLKRVCLLIDTKWGV----KPRD-HELISLME--------------RSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~----~~~~-~~~~~~l~--------------~~~~p~i~v~nK~D~~~~~~~~~~~~~l~ 229 (243)
++....+|++++|+|++... ...+ ..+.+.|. ....|+++|+||+|+....+... .+.
T Consensus 231 LrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e---~l~ 307 (500)
T PRK12296 231 LRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAE---FVR 307 (500)
T ss_pred HHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHH---HHH
Confidence 44455599999999986411 1111 12222221 23689999999999976544332 334
Q ss_pred HHHhhCCCccccCC
Q 026112 230 ESLKANNSLVQPVV 243 (243)
Q Consensus 230 ~~l~~~~~~~~pi~ 243 (243)
..+...+..++|||
T Consensus 308 ~~l~~~g~~Vf~IS 321 (500)
T PRK12296 308 PELEARGWPVFEVS 321 (500)
T ss_pred HHHHHcCCeEEEEE
Confidence 44555566677764
|
|
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=141.70 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=81.9
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eC-CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LG-TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~-~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
+..++|+++|++|||||||+|+|++.. ..+.+.+++|.+..... .+ ..+.+|||||+.+..... ....+....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-~~~~~~~~~ 115 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD--VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQ-LVEAFRSTL 115 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch--hccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHH-HHHHHHHHH
Confidence 456899999999999999999999983 34455556665543322 13 389999999985432221 111222221
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCChHHH
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDV 221 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~~~~ 221 (243)
.....+|++++|+|++.+....+ ..+.+.+.. .+.|+++|+||+|+......
T Consensus 116 ----~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~ 171 (204)
T cd01878 116 ----EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL 171 (204)
T ss_pred ----HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH
Confidence 12234899999999987544433 233444443 35899999999999876543
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.80 E-value=5e-19 Score=153.54 Aligned_cols=141 Identities=18% Similarity=0.216 Sum_probs=94.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---C-CcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---G-TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
...|+|+|.||||||||+|+|++.. ..++++++||..+..... + ..+.++||||+.+..... ..+...
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~--~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~------~gLg~~ 228 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEG------AGLGHR 228 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCC--ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccc------ccHHHH
Confidence 4689999999999999999999873 568999999988765442 3 689999999986532221 112233
Q ss_pred HHhcccCccEEEEEEeCCCC---CC-hhhHHHHHHHHh-----cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCc
Q 026112 168 YVSTRVSLKRVCLLIDTKWG---VK-PRDHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 238 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~---~~-~~~~~~~~~l~~-----~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~ 238 (243)
+++....++++++|+|++.. .. .....+.+.+.. ...|+++|+||+|+..........+.+.+. .+..
T Consensus 229 flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~---~~~~ 305 (329)
T TIGR02729 229 FLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKA---LGKP 305 (329)
T ss_pred HHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHH---cCCc
Confidence 34444459999999998753 11 122234444432 368999999999998765444433333332 2345
Q ss_pred cccCC
Q 026112 239 VQPVV 243 (243)
Q Consensus 239 ~~pi~ 243 (243)
++|+|
T Consensus 306 vi~iS 310 (329)
T TIGR02729 306 VFPIS 310 (329)
T ss_pred EEEEE
Confidence 55553
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-18 Score=135.11 Aligned_cols=139 Identities=28% Similarity=0.260 Sum_probs=95.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE---EEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|+|||||+|+|++. ......+.+++|++... ...+..+.+|||||+.+........+.+. ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~--~~~~ 78 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGE-ERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYS--VLRT 78 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc-cceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHH--HHHH
Confidence 368999999999999999999997 43556777888776532 22356799999999865321111111111 0111
Q ss_pred HhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh--HHHHHHHHHHHHHHh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP--IDVARRAMQIEESLK 233 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~--~~~~~~~~~l~~~l~ 233 (243)
+.....+|++++|+|+..+.......++..+...+.|+++|+||+|+... .........+++.+.
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLP 145 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcc
Confidence 22223489999999998877777777777777778999999999999876 344444555555544
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=158.83 Aligned_cols=121 Identities=23% Similarity=0.365 Sum_probs=94.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
+.|+|+++|.+|||||||+|+|++. ..+.+++.+|+|++..... .+..+.+|||||+... ...+...+......
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~-~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~--~~~~~~~~~~~~~~ 113 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGR-REAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPD--AKGLQASVAEQAEV 113 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCc-CcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCc--chhHHHHHHHHHHH
Confidence 4589999999999999999999998 5567889999999876543 3677999999998631 12222222222333
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
++. .+|++++|+|++.+.+..+..+.+.+...+.|+++|+||+|+..
T Consensus 114 ~~~---~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 114 AMR---TADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDER 160 (472)
T ss_pred HHH---hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCc
Confidence 333 39999999999988777788888989888999999999999864
|
|
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-18 Score=132.88 Aligned_cols=132 Identities=26% Similarity=0.248 Sum_probs=91.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
..+|+++|.+|+|||||+|+|++. ....+++.+.+++...... .+..+.++||||+....... ...+......+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~--~~~~~~~~~~~ 79 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKL--GERMVKAAWSA 79 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC-ceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHH--HHHHHHHHHHH
Confidence 468999999999999999999998 5566666677776653322 24678999999987532211 11111222222
Q ss_pred HhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC-ChHHHHHHHHHHH
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIE 229 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~-~~~~~~~~~~~l~ 229 (243)
...+|++++|+|+.+........+...+...+.|+++|+||+|+. .+.........+.
T Consensus 80 ---~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~ 138 (168)
T cd04163 80 ---LKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLK 138 (168)
T ss_pred ---HHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHH
Confidence 234899999999987766666677777777789999999999998 4444444444443
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-18 Score=139.72 Aligned_cols=126 Identities=22% Similarity=0.331 Sum_probs=87.1
Q ss_pred CEEEEecCCCCchhHHHHHHhccc-----ccccccCCCCceEEEEEEE---e--------------CCcEEEEeCCCCCC
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQTINFFK---L--------------GTKLCLVDLPGYGF 150 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~-----~~~~vs~~~gtT~~~~~~~---~--------------~~~~~liDTpG~~~ 150 (243)
.+|+++|.+|+|||||+++|++.. +.......+|+|.+..+.. . +..+.+|||||+.
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~- 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA- 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH-
Confidence 379999999999999999999731 1122334556777654321 1 5689999999973
Q ss_pred CccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHH
Q 026112 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (243)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~ 230 (243)
.+...++.....+|++++|+|+..+......+.+......+.|+++|+||+|+..........+.+++
T Consensus 80 ------------~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~ 147 (192)
T cd01889 80 ------------SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKK 147 (192)
T ss_pred ------------HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHH
Confidence 23334444444589999999998876665555555555568899999999999866555444555554
Q ss_pred H
Q 026112 231 S 231 (243)
Q Consensus 231 ~ 231 (243)
.
T Consensus 148 ~ 148 (192)
T cd01889 148 K 148 (192)
T ss_pred H
Confidence 3
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-18 Score=154.78 Aligned_cols=119 Identities=26% Similarity=0.424 Sum_probs=93.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
++|+++|.+|+|||||+|+|++. ..+.+++.+|+|++..... .+..+.+|||||+... .......+......++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~-~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~--~~~~~~~~~~~~~~~~ 78 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGK-RDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPD--DDGFEKQIREQAELAI 78 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCc--chhHHHHHHHHHHHHH
Confidence 68999999999999999999998 5567889999999875443 3678999999998652 1112222222222233
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
..+|++++|+|+..+.+..+..+.+++...+.|+++|+||+|+..
T Consensus 79 ---~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~ 123 (435)
T PRK00093 79 ---EEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPD 123 (435)
T ss_pred ---HhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCcc
Confidence 349999999999988888888888889888999999999999765
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-18 Score=138.42 Aligned_cols=138 Identities=14% Similarity=0.197 Sum_probs=96.3
Q ss_pred EEEEecCCCCchhHHHHHHhccccccccc-CCCCceEEEEEEE---eCCcEEEEeCCCCCCCccc-hHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAK-EEVKDAWEELVKEY 168 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs-~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~-~~~~~~~~~~~~~~ 168 (243)
+|+++|.||+|||||+|+|++.. ....+ ..+++|++++... .+..+.++||||+.+.... +.+. ..+...+
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~-~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~---~~i~~~~ 77 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGRE-VFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLS---KEIVRCL 77 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCC-ccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHH---HHHHHHH
Confidence 79999999999999999999984 23332 2567888776543 3778999999999875432 2222 2333333
Q ss_pred HhcccCccEEEEEEeCCCCCChhhHHHHHHHHhc-----CCcEEEEeecCCCCChHHHHHH----HHHHHHHHhhCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLTKTDTVFPIDVARR----AMQIEESLKANN 236 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~-----~~p~i~v~nK~D~~~~~~~~~~----~~~l~~~l~~~~ 236 (243)
......+|++++|+|+.+ ++..+..+++.++.. ..++++|+|++|...+..+... ...++..++..+
T Consensus 78 ~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~ 153 (196)
T cd01852 78 SLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCG 153 (196)
T ss_pred HhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhC
Confidence 333456899999999887 788888888888664 3689999999998875433322 234455555433
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.8e-18 Score=137.19 Aligned_cols=131 Identities=19% Similarity=0.271 Sum_probs=94.9
Q ss_pred CEEEEecCCCCchhHHHHHHhccccc--------------ccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccch
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGV--------------VRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKE 155 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~--------------~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~ 155 (243)
.+|+++|.+|+|||||+++|+..... .......|+|.+..... .+..+.++||||+..
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~----- 77 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD----- 77 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH-----
Confidence 58999999999999999999864100 00112567777764333 356799999999732
Q ss_pred HHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCChHHHH-HHHHHHHHHHh
Q 026112 156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVA-RRAMQIEESLK 233 (243)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~~~~~-~~~~~l~~~l~ 233 (243)
+..........+|++++|+|+..+....+.+++..+...++| +++|+||+|+....+.. ...+++++.+.
T Consensus 78 --------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~ 149 (195)
T cd01884 78 --------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLS 149 (195)
T ss_pred --------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHH
Confidence 333334444559999999999988888888999999988987 78999999997544433 34456777766
Q ss_pred hCC
Q 026112 234 ANN 236 (243)
Q Consensus 234 ~~~ 236 (243)
..+
T Consensus 150 ~~g 152 (195)
T cd01884 150 KYG 152 (195)
T ss_pred Hhc
Confidence 543
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.3e-18 Score=132.13 Aligned_cols=121 Identities=26% Similarity=0.304 Sum_probs=86.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
+.+|+++|++|+|||||+|+|++. ....+++.+++|.+..... .+..+.++||||+.+.... .... .....
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--~~~~---~~~~~ 74 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGR-DRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDE--IEKI---GIERA 74 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCC-ceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcch--HHHH---HHHHH
Confidence 358999999999999999999998 4566788889988765432 2568999999998764321 1110 11112
Q ss_pred HhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHH
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~ 220 (243)
......+|++++|+|++.+....+..++.. ..+.|+++|+||+|+.....
T Consensus 75 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~ 124 (157)
T cd04164 75 REAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSE 124 (157)
T ss_pred HHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCccc
Confidence 222234899999999987665555554443 45799999999999986543
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.5e-18 Score=161.54 Aligned_cols=123 Identities=24% Similarity=0.373 Sum_probs=96.4
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
...++|+++|.||+|||||+|+|++. +.+.+++.+|+|++..... .+..+.+|||||+... .+.+...+.....
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~-~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~--~~~~~~~~~~~~~ 349 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGR-REAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEAD--VEGIDSAIASQAQ 349 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCC--CccHHHHHHHHHH
Confidence 44679999999999999999999998 5578899999999976543 2568999999998642 1222222222222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
.++ ..+|++++|+|+..++...+..+.+.+...++|+++|+||+|+...
T Consensus 350 ~~~---~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~ 398 (712)
T PRK09518 350 IAV---SLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQAS 398 (712)
T ss_pred HHH---HhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccc
Confidence 333 3499999999999888888888999999899999999999998653
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.3e-18 Score=160.54 Aligned_cols=128 Identities=22% Similarity=0.228 Sum_probs=95.3
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE---EEeCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
...++|+++|.+|+|||||+|+|++. ....+++++|||++... ...+..+.+|||||+........-.+.+.. +
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~-~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~-~- 524 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHE-ERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSS-L- 524 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCc-cccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHH-H-
Confidence 34689999999999999999999998 44678899999998743 234778999999998643211110111111 1
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHH
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~ 220 (243)
+.......+|++++|+|++.+.+..+..++..+...+.|+++|+||+|+.....
T Consensus 525 r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~ 578 (712)
T PRK09518 525 RTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFR 578 (712)
T ss_pred HHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhH
Confidence 112223459999999999998888888888888778999999999999987544
|
|
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.2e-18 Score=135.70 Aligned_cols=129 Identities=21% Similarity=0.272 Sum_probs=90.6
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccc--------------cCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRT--------------SDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEE 156 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~v--------------s~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~ 156 (243)
+|+++|.+|+|||||+|+|++....... ....++|.+..... .+..+.+|||||+.+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~------ 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHED------ 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHH------
Confidence 4899999999999999999987321111 11234454433222 256799999999743
Q ss_pred HHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhC
Q 026112 157 VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN 235 (243)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~ 235 (243)
+......++. .+|++++|+|+.++......+++..+...+.|+++|+||+|+..+.+.......+++.++..
T Consensus 75 ----~~~~~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~ 146 (189)
T cd00881 75 ----FSSEVIRGLS---VSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLI 146 (189)
T ss_pred ----HHHHHHHHHH---hcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccc
Confidence 1112222332 39999999999887777777777777777899999999999998666666666777766553
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.9e-18 Score=131.56 Aligned_cols=111 Identities=23% Similarity=0.359 Sum_probs=81.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE------eCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~------~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
|.|+++|.+|+|||||+|+|++.. ......+++|.+..... .+..+.+|||||... +..+..
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~----------~~~~~~ 68 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTN--VAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA----------FTNMRA 68 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcc--cccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH----------HHHHHH
Confidence 579999999999999999999873 22334556776653222 146799999999632 112222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
.++ ..+|++++|+|++.+........+..+...++|+++|+||+|+...
T Consensus 69 ~~~---~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 69 RGA---SLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNA 117 (168)
T ss_pred HHH---hhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccc
Confidence 222 2389999999998766666666777777789999999999998753
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.2e-18 Score=138.43 Aligned_cols=136 Identities=16% Similarity=0.144 Sum_probs=89.0
Q ss_pred EEEEecCCCCchhHHHHHHhccccccccc------------------------------CCCCceEEEEEEE---eCCcE
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTS------------------------------DKPGLTQTINFFK---LGTKL 140 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs------------------------------~~~gtT~~~~~~~---~~~~~ 140 (243)
+|+++|++|+|||||+|+|+...+ ...+ ..+|+|++..... .+..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSK-SIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceE
Confidence 589999999999999999987632 1111 1267787764332 36789
Q ss_pred EEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCC-cEEEEeecCCCCCh-
Q 026112 141 CLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDTVFP- 218 (243)
Q Consensus 141 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~-p~i~v~nK~D~~~~- 218 (243)
.++||||+.+ +..........+|++++|+|+..+....+.....++...+. ++++|+||+|+...
T Consensus 80 ~liDTpG~~~-------------~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~ 146 (208)
T cd04166 80 IIADTPGHEQ-------------YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYS 146 (208)
T ss_pred EEEECCcHHH-------------HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCC
Confidence 9999999632 11112222345999999999988776666666666666665 47889999999752
Q ss_pred -HHHHHHHHHHHHHHhhCC---CccccCC
Q 026112 219 -IDVARRAMQIEESLKANN---SLVQPVV 243 (243)
Q Consensus 219 -~~~~~~~~~l~~~l~~~~---~~~~pi~ 243 (243)
.........+++.+...+ ..++||+
T Consensus 147 ~~~~~~i~~~~~~~~~~~~~~~~~ii~iS 175 (208)
T cd04166 147 EEVFEEIVADYLAFAAKLGIEDITFIPIS 175 (208)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCceEEEEe
Confidence 223344445554444443 2355653
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.4e-18 Score=131.87 Aligned_cols=134 Identities=22% Similarity=0.206 Sum_probs=88.9
Q ss_pred EecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhccc
Q 026112 97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (243)
Q Consensus 97 ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (243)
++|.+|+|||||+|++++.. ..++.++++|.+.... ..+..+.+|||||+.+...... ...+...++.. .
T Consensus 1 l~G~~~~GKssl~~~~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~----~~~~~~~~~~~-~ 73 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR--QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSE----DEKVARDFLLG-E 73 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc--ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCCh----hHHHHHHHhcC-C
Confidence 57999999999999999973 5677888888876432 2356799999999864322110 01233344433 4
Q ss_pred CccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 174 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 174 ~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
.+|++++|+|+... .....+...+...++|+++|+||+|+............+.+. .+..++|+
T Consensus 74 ~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~i 137 (158)
T cd01879 74 KPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSEL---LGVPVVPT 137 (158)
T ss_pred CCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHh---hCCCeEEE
Confidence 59999999998753 333455556666789999999999997654433333333333 23445554
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.9e-17 Score=138.60 Aligned_cols=148 Identities=20% Similarity=0.336 Sum_probs=101.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccC--------CCCceE-EEE---EEEeC--CcEEEEeCCCCCCCccchHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD--------KPGLTQ-TIN---FFKLG--TKLCLVDLPGYGFAYAKEEV 157 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~--------~~gtT~-~~~---~~~~~--~~~~liDTpG~~~~~~~~~~ 157 (243)
.++|+++|.+|+|||||+|+|++.. ....+. ...|+. ... ....| ..+.+|||||+++.......
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~-~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTK-LIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCC-CccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 4689999999999999999999983 332221 223321 111 11123 36999999999876433221
Q ss_pred HHHHHH----HHHHHHhc-----------ccCccEEEEEEeCC-CCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHH
Q 026112 158 KDAWEE----LVKEYVST-----------RVSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV 221 (243)
Q Consensus 158 ~~~~~~----~~~~~~~~-----------~~~~d~v~~vvd~~-~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~ 221 (243)
.+.... -...|+.. -..+|+++++++++ +++.+.+.++++.+.. ++|+++|+||+|++...+.
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l~~~e~ 161 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTLTPEEL 161 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcCCHHHH
Confidence 111111 11122211 11378899999876 4677888889998876 7999999999999998888
Q ss_pred HHHHHHHHHHHhhCCCcccc
Q 026112 222 ARRAMQIEESLKANNSLVQP 241 (243)
Q Consensus 222 ~~~~~~l~~~l~~~~~~~~p 241 (243)
......+++.+..++..+++
T Consensus 162 ~~~k~~i~~~l~~~~i~~~~ 181 (276)
T cd01850 162 KEFKQRIMEDIEEHNIKIYK 181 (276)
T ss_pred HHHHHHHHHHHHHcCCceEC
Confidence 88888999999999887775
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-17 Score=132.93 Aligned_cols=127 Identities=26% Similarity=0.420 Sum_probs=92.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccccc----------------ccCCCCceEE---EEEE--EeCCcEEEEeCCCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR----------------TSDKPGLTQT---INFF--KLGTKLCLVDLPGYGF 150 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~----------------vs~~~gtT~~---~~~~--~~~~~~~liDTpG~~~ 150 (243)
..+|+++|+.++|||||+++|++...... .....+.|.+ ..+. ..+..+.++||||+.+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 46899999999999999999997531100 0011233333 2333 4467899999999732
Q ss_pred CccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHH
Q 026112 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (243)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~ 230 (243)
+..........+|++++|+|+..++.....+.+..+...++|+++|+||+|+. ..+..+..+.+.+
T Consensus 83 -------------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~-~~~~~~~~~~~~~ 148 (188)
T PF00009_consen 83 -------------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLI-EKELEEIIEEIKE 148 (188)
T ss_dssp -------------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSS-HHHHHHHHHHHHH
T ss_pred -------------eeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccch-hhhHHHHHHHHHH
Confidence 33333333455999999999999999999999999999999999999999999 5566666666664
Q ss_pred HH
Q 026112 231 SL 232 (243)
Q Consensus 231 ~l 232 (243)
.+
T Consensus 149 ~l 150 (188)
T PF00009_consen 149 KL 150 (188)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.8e-18 Score=133.51 Aligned_cols=119 Identities=23% Similarity=0.267 Sum_probs=78.0
Q ss_pred EecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---e-CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcc
Q 026112 97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---L-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (243)
Q Consensus 97 ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (243)
++|++|||||||+|+|++. .. .+++++++|.++.... . +..+.++||||+.+..... +.+...+....
T Consensus 1 iiG~~~~GKStll~~l~~~-~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~------~~~~~~~~~~~ 72 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNA-KP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEG------RGLGNQFLAHI 72 (176)
T ss_pred CCCCCCCcHHHHHHHHhcC-Cc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcC------CCccHHHHHHH
Confidence 5799999999999999998 33 6778888888764432 3 6789999999985421111 01111222222
Q ss_pred cCccEEEEEEeCCCCC-----Ch-hh-HHHHHHHHh----------cCCcEEEEeecCCCCChHHHHH
Q 026112 173 VSLKRVCLLIDTKWGV-----KP-RD-HELISLMER----------SQTKYQVVLTKTDTVFPIDVAR 223 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~-----~~-~~-~~~~~~l~~----------~~~p~i~v~nK~D~~~~~~~~~ 223 (243)
..+|++++|+|+.... .. .+ ..+...+.. .+.|+++|+||+|+........
T Consensus 73 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~ 140 (176)
T cd01881 73 RRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEE 140 (176)
T ss_pred hccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHH
Confidence 3489999999987652 11 11 122222221 3689999999999987655444
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.7e-17 Score=134.98 Aligned_cols=127 Identities=23% Similarity=0.182 Sum_probs=90.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
...+|+++|.+|+|||||+|+|++. ....++...++|..+..+. .+..+.+|||||+.+........+.....+.+
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~-~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~ 108 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGE-RKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKR 108 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC-CCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHH
Confidence 4679999999999999999999998 5566778878888776543 36789999999998753222222222223344
Q ss_pred HHhcccCccEEEEEEeCCC-CCChhhHHHHHHHHhc-----CCcEEEEeecCCCCChH
Q 026112 168 YVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS-----QTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~-~~~~~~~~~~~~l~~~-----~~p~i~v~nK~D~~~~~ 219 (243)
|+.. ...|++++|..... .....+..+++.+... ..++++|+||+|...+.
T Consensus 109 ~l~~-~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 109 YLKK-KTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHhc-cCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 4432 24788888875542 4566677777777642 36899999999998654
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-17 Score=156.48 Aligned_cols=139 Identities=20% Similarity=0.209 Sum_probs=97.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCcc---chHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA---KEEVKDAWEELVK 166 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~ 166 (243)
.+|+++|.||||||||+|+|++.. ..+++.+|+|.+..... .+..+.++||||+.+-.. ..... +....
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~--~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~---E~i~~ 78 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGAR--QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLD---EQIAC 78 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC--CccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHH---HHHHH
Confidence 589999999999999999999984 57899999999865433 366899999999754211 01111 12222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
.++. ...+|++++|+|+++. +....+...+.+.++|+++|+||+|+.+........+.+.+.+ +.++.|+
T Consensus 79 ~~l~-~~~aD~vI~VvDat~l--er~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~L---G~pVvpi 148 (772)
T PRK09554 79 HYIL-SGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARL---GCPVIPL 148 (772)
T ss_pred HHHh-ccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHh---CCCEEEE
Confidence 3332 2348999999999864 3445566677788999999999999875544444445555544 3455554
|
|
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.3e-17 Score=130.96 Aligned_cols=111 Identities=26% Similarity=0.299 Sum_probs=77.2
Q ss_pred CEEEEecCCCCchhHHHHHHhccccccccc---------------CCCCceEEEE---EEEeCCcEEEEeCCCCCCCccc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS---------------DKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAK 154 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs---------------~~~gtT~~~~---~~~~~~~~~liDTpG~~~~~~~ 154 (243)
.+|+++|.+|+|||||+|+|++... .... ...|+|.... ....+..+.+|||||..+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~-~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~---- 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSG-TFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD---- 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcC-CCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH----
Confidence 4899999999999999999997311 1111 1234444432 223366899999999743
Q ss_pred hHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
+......++.. +|++++|+|++.+.......++..+...++|+++|+||+|+..
T Consensus 78 ------~~~~~~~~~~~---~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 131 (194)
T cd01891 78 ------FGGEVERVLSM---VDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPD 131 (194)
T ss_pred ------HHHHHHHHHHh---cCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 12233344433 8999999999876555555666666667899999999999974
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-17 Score=138.22 Aligned_cols=136 Identities=21% Similarity=0.243 Sum_probs=95.3
Q ss_pred EEEEecCCCCchhHHHHHHhcccc----ccccc------------CCCCceEEEEE---EEeCCcEEEEeCCCCCCCccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWG----VVRTS------------DKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAK 154 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~----~~~vs------------~~~gtT~~~~~---~~~~~~~~liDTpG~~~~~~~ 154 (243)
+|+++|++|+|||||+|+|+.... ...+. ...|+|.+... ...+..+.++||||+.+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df--- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDF--- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHH---
Confidence 489999999999999999975321 11111 23466666433 334778999999997431
Q ss_pred hHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhh
Q 026112 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (243)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~ 234 (243)
......++ ..+|++++|+|+..++...+..+++.+...++|+++++||+|+... ........+++.++.
T Consensus 78 -------~~~~~~~l---~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a-~~~~~~~~l~~~l~~ 146 (270)
T cd01886 78 -------TIEVERSL---RVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGA-DFFRVVEQIREKLGA 146 (270)
T ss_pred -------HHHHHHHH---HHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC-CHHHHHHHHHHHhCC
Confidence 11122222 3389999999999888888888889888889999999999999753 344566777777776
Q ss_pred CCCccc-cCC
Q 026112 235 NNSLVQ-PVV 243 (243)
Q Consensus 235 ~~~~~~-pi~ 243 (243)
.....+ ||+
T Consensus 147 ~~~~~~~Pis 156 (270)
T cd01886 147 NPVPLQLPIG 156 (270)
T ss_pred CceEEEeccc
Confidence 544333 653
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.9e-17 Score=128.44 Aligned_cols=111 Identities=21% Similarity=0.219 Sum_probs=73.9
Q ss_pred EEEEecCCCCchhHHHHHHhcccccc-------c------ccCCCCceEEEEEE---E-----eCCcEEEEeCCCCCCCc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVV-------R------TSDKPGLTQTINFF---K-----LGTKLCLVDLPGYGFAY 152 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~-------~------vs~~~gtT~~~~~~---~-----~~~~~~liDTpG~~~~~ 152 (243)
+|+++|.+|+|||||+++|++..... . .....|+|...... . .+..+.+|||||+.+
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-- 79 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD-- 79 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh--
Confidence 68999999999999999999752100 0 01123444432211 1 144578999999753
Q ss_pred cchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
+......++.. +|++++|+|++.+....+...+..+...++|+++|+||+|+..
T Consensus 80 --------~~~~~~~~~~~---ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~ 133 (179)
T cd01890 80 --------FSYEVSRSLAA---CEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPS 133 (179)
T ss_pred --------hHHHHHHHHHh---cCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCc
Confidence 12233334333 8999999999876655555555555566899999999999864
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.3e-17 Score=143.91 Aligned_cols=133 Identities=20% Similarity=0.261 Sum_probs=96.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccc--------------ccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV--------------VRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA 153 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~--------------~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~ 153 (243)
...+|+++|.+|+|||||+|+|++.... ......+|+|.+..... .+..+.++||||+.+
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~--- 87 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD--- 87 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH---
Confidence 4578999999999999999999975210 01112377888864332 256789999999631
Q ss_pred chHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCChHHHH-HHHHHHHHH
Q 026112 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVA-RRAMQIEES 231 (243)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~~~~~-~~~~~l~~~ 231 (243)
++.........+|++++|+|+..++..++.+++..+...++| +++|+||+|+....+.. ...+++.+.
T Consensus 88 ----------~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~ 157 (409)
T CHL00071 88 ----------YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVREL 157 (409)
T ss_pred ----------HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 233333334459999999999988888888999999989999 77899999998765543 333566666
Q ss_pred HhhCC
Q 026112 232 LKANN 236 (243)
Q Consensus 232 l~~~~ 236 (243)
+...+
T Consensus 158 l~~~~ 162 (409)
T CHL00071 158 LSKYD 162 (409)
T ss_pred HHHhC
Confidence 66543
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.1e-17 Score=149.07 Aligned_cols=137 Identities=24% Similarity=0.354 Sum_probs=100.2
Q ss_pred EEEEecCCCCchhHHHHHHhccc-ccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~-~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.|+++|++|+|||||+|+|++.. +.......+|+|.++.+... +..+.+|||||+. .+...+.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe-------------~f~~~~~ 68 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE-------------KFISNAI 68 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH-------------HHHHHHH
Confidence 68999999999999999999852 11112335678888755432 5678999999962 2344444
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCChHHHHHHHHHHHHHHhhC----CCccccCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARRAMQIEESLKAN----NSLVQPVV 243 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~----~~~~~pi~ 243 (243)
.....+|++++|+|+++++..+..+.+..+...++| +++|+||+|+.+........+.+++.+... +.+++|+|
T Consensus 69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vS 147 (581)
T TIGR00475 69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTS 147 (581)
T ss_pred hhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEe
Confidence 445569999999999988777777888888888999 999999999998766555555666655543 34555654
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-16 Score=129.20 Aligned_cols=116 Identities=23% Similarity=0.228 Sum_probs=78.2
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccC---CCCceEEEEEEEe--CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSD---KPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~---~~gtT~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
++|+++|.+|+|||||+|+|++......... ...+|.....+.. ...+.+|||||+.+..... ..++..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~------~~~l~~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPP------DDYLEE 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCH------HHHHHH
Confidence 5799999999999999999999632111111 1123444333322 3478999999997642221 112221
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
. ....+|++++|.|. +++..+..+++.+...+.|+++|+||+|+..+
T Consensus 76 ~--~~~~~d~~l~v~~~--~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~ 122 (197)
T cd04104 76 M--KFSEYDFFIIISST--RFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLS 122 (197)
T ss_pred h--CccCcCEEEEEeCC--CCCHHHHHHHHHHHHhCCCEEEEEecccchhh
Confidence 1 12347888887543 47788888999999889999999999999754
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.3e-17 Score=145.52 Aligned_cols=140 Identities=21% Similarity=0.259 Sum_probs=96.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccc-----------------------ccc------CCCCceEEEEEEEe---CC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-----------------------RTS------DKPGLTQTINFFKL---GT 138 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~-----------------------~vs------~~~gtT~~~~~~~~---~~ 138 (243)
...+|+++|++|+|||||+++|+...... .+. ..+|+|+++..... +.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 45789999999999999999999542110 001 15789999865543 67
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCC--CCChhhHHHHHHHHhcCC-cEEEEeecCCC
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW--GVKPRDHELISLMERSQT-KYQVVLTKTDT 215 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~--~~~~~~~~~~~~l~~~~~-p~i~v~nK~D~ 215 (243)
.+.+|||||+.+ +...+......+|++++|+|+.. ++.....+.+..+...+. |+++|+||+|+
T Consensus 85 ~i~liDtpG~~~-------------~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl 151 (425)
T PRK12317 85 YFTIVDCPGHRD-------------FVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDA 151 (425)
T ss_pred EEEEEECCCccc-------------chhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcccc
Confidence 899999999743 11222223345999999999987 666666677777777775 59999999999
Q ss_pred CCh--HHHHHHHHHHHHHHhhCC-----CccccCC
Q 026112 216 VFP--IDVARRAMQIEESLKANN-----SLVQPVV 243 (243)
Q Consensus 216 ~~~--~~~~~~~~~l~~~l~~~~-----~~~~pi~ 243 (243)
... .......+.+.+.+...+ ..++|+|
T Consensus 152 ~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iS 186 (425)
T PRK12317 152 VNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVS 186 (425)
T ss_pred ccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEee
Confidence 752 233445556666555443 2455654
|
|
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.1e-17 Score=133.72 Aligned_cols=134 Identities=40% Similarity=0.589 Sum_probs=115.9
Q ss_pred CCCCCCCCCEEEEecCCCCchhHHHHHHhcccccccccC-CCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHH
Q 026112 85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (243)
Q Consensus 85 ~~~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~-~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~ 163 (243)
...|....|+++++|.+|+|||||||.++........+. .+|.|+.++.+..+.++.++|.||++.+....+....|..
T Consensus 129 ~D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 129 EDCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred ccCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhH
Confidence 344556779999999999999999999998754444444 8999999999999999999999998776555556677889
Q ss_pred HHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 164 ~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
+...|+-.+...-.+++.+|++-++...|...++++.+.++|+.+|+||||....
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKK 263 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhhh
Confidence 9999999988889999999999999999999999999999999999999998743
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-16 Score=146.34 Aligned_cols=137 Identities=22% Similarity=0.325 Sum_probs=102.7
Q ss_pred EEEEecCCCCchhHHHHHHhccc-ccccccCCCCceEEEEEEEe----CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~-~~~~vs~~~gtT~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.|+++|..++|||||+++|++.. +........|.|.+..+... +..+.+|||||+. .+...+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe-------------~fi~~m 68 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE-------------KFLSNM 68 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH-------------HHHHHH
Confidence 68999999999999999999852 11223344688888765432 4568999999972 233444
Q ss_pred HhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCChHHHHHHHHHHHHHHhhCC---CccccCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARRAMQIEESLKANN---SLVQPVV 243 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~---~~~~pi~ 243 (243)
......+|++++|+|+.+++.+++.+.+..+...++| +++|+||+|+.+........+.+++.+...+ .+++|||
T Consensus 69 ~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VS 147 (614)
T PRK10512 69 LAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTA 147 (614)
T ss_pred HHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 4445559999999999998888888888888888888 5799999999877666666777777776544 3555654
|
|
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-16 Score=140.10 Aligned_cols=134 Identities=21% Similarity=0.293 Sum_probs=97.8
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccc-----cc---------cccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-----VV---------RTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAY 152 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~-----~~---------~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~ 152 (243)
....+|+++|+.++|||||+++|++... .. ......|+|.++..... +..+.++||||+.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~--- 86 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA--- 86 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH---
Confidence 3457999999999999999999987310 00 01125678888754433 5678999999963
Q ss_pred cchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCChHHHHH-HHHHHHH
Q 026112 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVAR-RAMQIEE 230 (243)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~~~~~~-~~~~l~~ 230 (243)
.+...++.....+|++++|+|+..++...+.+++..+...++| +++|+||+|+.+..+..+ ..+++++
T Consensus 87 ----------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~ 156 (394)
T PRK12736 87 ----------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRE 156 (394)
T ss_pred ----------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHH
Confidence 2344444555569999999999988888888899999888998 678999999986555443 3346666
Q ss_pred HHhhCC
Q 026112 231 SLKANN 236 (243)
Q Consensus 231 ~l~~~~ 236 (243)
.+...+
T Consensus 157 ~l~~~~ 162 (394)
T PRK12736 157 LLSEYD 162 (394)
T ss_pred HHHHhC
Confidence 666544
|
|
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-16 Score=131.08 Aligned_cols=133 Identities=23% Similarity=0.274 Sum_probs=93.9
Q ss_pred EEEEecCCCCchhHHHHHHhcccccc----ccc------------CCCCceEEE---EEEEeCCcEEEEeCCCCCCCccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVV----RTS------------DKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAK 154 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~----~vs------------~~~gtT~~~---~~~~~~~~~~liDTpG~~~~~~~ 154 (243)
+|+++|.+|+|||||+++|+...... .+. ...|.|... .+...+..+.+|||||+.+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f--- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDF--- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccch---
Confidence 48999999999999999998752110 011 011223222 22234678999999998541
Q ss_pred hHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhh
Q 026112 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (243)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~ 234 (243)
......+++. +|++++|+|+..+.......+.+.+...++|+++++||+|+... .....++.+++.+..
T Consensus 78 -------~~~~~~~l~~---aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a-~~~~~~~~i~~~~~~ 146 (237)
T cd04168 78 -------IAEVERSLSV---LDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGA-DLEKVYQEIKEKLSS 146 (237)
T ss_pred -------HHHHHHHHHH---hCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCC-CHHHHHHHHHHHHCC
Confidence 1112223332 89999999999888777778888888889999999999999854 356778888988887
Q ss_pred CCCccc
Q 026112 235 NNSLVQ 240 (243)
Q Consensus 235 ~~~~~~ 240 (243)
...+++
T Consensus 147 ~~~~~~ 152 (237)
T cd04168 147 DIVPMQ 152 (237)
T ss_pred CeEEEE
Confidence 655554
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.7e-16 Score=139.17 Aligned_cols=133 Identities=21% Similarity=0.310 Sum_probs=94.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc------cc--------ccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW------GV--------VRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYA 153 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~------~~--------~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~ 153 (243)
...+|+++|.+++|||||+++|++.. .. .......|+|.++..... +..+.++||||+.
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~---- 86 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA---- 86 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH----
Confidence 45789999999999999999999621 10 011125678888754432 5578999999973
Q ss_pred chHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEE-EEeecCCCCChHHHH-HHHHHHHHH
Q 026112 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPIDVA-RRAMQIEES 231 (243)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i-~v~nK~D~~~~~~~~-~~~~~l~~~ 231 (243)
.+..........+|++++|+|+..+...++.+++..+...++|.+ +|+||+|+.+..+.. .....+++.
T Consensus 87 ---------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~ 157 (396)
T PRK12735 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (396)
T ss_pred ---------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence 234444455556999999999998877788888888888899966 579999998644433 333456666
Q ss_pred HhhCC
Q 026112 232 LKANN 236 (243)
Q Consensus 232 l~~~~ 236 (243)
+...+
T Consensus 158 l~~~~ 162 (396)
T PRK12735 158 LSKYD 162 (396)
T ss_pred HHHcC
Confidence 65543
|
|
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.2e-17 Score=135.86 Aligned_cols=141 Identities=19% Similarity=0.193 Sum_probs=98.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe----CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
....|.+||.||||||||+|+|+... ..+.+|++||..+.+... ...+.+.|.||+.+..... ..+.-
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AK--pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~n------kGlG~ 266 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAK--PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMN------KGLGY 266 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccC--CcccccceeeeccccceeeccccceeEeccCcccccccccc------CcccH
Confidence 35678999999999999999999984 689999999998866543 2349999999987754433 23445
Q ss_pred HHHhcccCccEEEEEEeCCCC---CChhh-HHHHHHHHh-----cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWG---VKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS 237 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~---~~~~~-~~~~~~l~~-----~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~ 237 (243)
.|+++.+.++.++||+|.+.. ...+. ..+...+.. ...|.++|+||+|+.+.+ ...+..+.+.++..
T Consensus 267 ~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae--~~~l~~L~~~lq~~-- 342 (366)
T KOG1489|consen 267 KFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE--KNLLSSLAKRLQNP-- 342 (366)
T ss_pred HHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH--HHHHHHHHHHcCCC--
Confidence 666677779999999998754 11111 223333332 257899999999996432 23345666666543
Q ss_pred ccccCC
Q 026112 238 LVQPVV 243 (243)
Q Consensus 238 ~~~pi~ 243 (243)
.++||+
T Consensus 343 ~V~pvs 348 (366)
T KOG1489|consen 343 HVVPVS 348 (366)
T ss_pred cEEEee
Confidence 455553
|
|
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.1e-16 Score=119.13 Aligned_cols=121 Identities=26% Similarity=0.320 Sum_probs=85.7
Q ss_pred EecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe----CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcc
Q 026112 97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (243)
Q Consensus 97 ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (243)
++|++|+|||||+|+|++. .....+..+++|........ +..+.++||||+.+....... +......+..
T Consensus 1 i~G~~gsGKstl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~---~~~~~~~~~~-- 74 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQ-EVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRE---REELARRVLE-- 74 (163)
T ss_pred CcCCCCCCHHHHHHHHhCc-cccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhh---HHHHHHHHHH--
Confidence 5799999999999999998 44556777777777654332 568999999998764322210 0112222222
Q ss_pred cCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHH
Q 026112 173 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARR 224 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~ 224 (243)
.+|++++|+|+..........+.......+.|+++|+||+|+..+.+....
T Consensus 75 -~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~ 125 (163)
T cd00880 75 -RADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEEL 125 (163)
T ss_pred -hCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHH
Confidence 389999999998776555555456666678999999999999987655543
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.5e-16 Score=140.18 Aligned_cols=132 Identities=20% Similarity=0.258 Sum_probs=94.5
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccc-----ccc---------cccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQW-----GVV---------RTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAY 152 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~-----~~~---------~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~ 152 (243)
....+|+++|+.++|||||+++|++.. ... .....+|+|.+...... +..+.++||||+.+
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~-- 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD-- 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc--
Confidence 356789999999999999999997321 000 11223788888754443 45789999999853
Q ss_pred cchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCChHHHHHHH-HHHHH
Q 026112 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARRA-MQIEE 230 (243)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~~~~~~~~-~~l~~ 230 (243)
++.........+|++++|+|+..+...++.+++..+...++| +++|+||+|+.+..+..+.. ..+++
T Consensus 137 -----------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~ 205 (447)
T PLN03127 137 -----------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRE 205 (447)
T ss_pred -----------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHH
Confidence 222222333349999999999988888889999999999999 57899999998755544433 35555
Q ss_pred HHhh
Q 026112 231 SLKA 234 (243)
Q Consensus 231 ~l~~ 234 (243)
.+..
T Consensus 206 ~l~~ 209 (447)
T PLN03127 206 LLSF 209 (447)
T ss_pred HHHH
Confidence 5543
|
|
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-16 Score=123.73 Aligned_cols=110 Identities=17% Similarity=0.230 Sum_probs=69.4
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (243)
+|+++|.+|+|||||+|++++.. .....+..+.+...........+.++||||... . ......++.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~------~----~~~~~~~~~--- 66 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAE-LVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEK------M----RTVWKCYLE--- 66 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-cccccCccCcceEEEEeCCceEEEEEECCCCHh------H----HHHHHHHhc---
Confidence 48999999999999999999883 222233233222211112245799999999632 1 222233333
Q ss_pred CccEEEEEEeCCCCCC--hhhHHHHHHHHh---cCCcEEEEeecCCCCC
Q 026112 174 SLKRVCLLIDTKWGVK--PRDHELISLMER---SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 174 ~~d~v~~vvd~~~~~~--~~~~~~~~~l~~---~~~p~i~v~nK~D~~~ 217 (243)
.+|++++|+|+++..+ .....+.+.+.. .+.|+++|+||+|+..
T Consensus 67 ~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 67 NTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred cCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 3899999999876531 122223333332 4789999999999964
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.6e-16 Score=125.99 Aligned_cols=137 Identities=23% Similarity=0.307 Sum_probs=87.5
Q ss_pred EEEEecCCCCchhHHHHHHhccc-ccccccCCCCceEEEEEEE------------------------------------e
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFK------------------------------------L 136 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~-~~~~vs~~~gtT~~~~~~~------------------------------------~ 136 (243)
+|+++|+.|+|||||+.+|++.. +........+.|..+.+.. .
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 78999999999999999998752 0000001111121111000 0
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC-CChhhHHHHHHHHhcCC-cEEEEeecCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQT-KYQVVLTKTD 214 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-~~~~~~~~~~~l~~~~~-p~i~v~nK~D 214 (243)
...+.+|||||+. .+...++.....+|++++|+|+..+ ........+..+...+. |+++|+||+|
T Consensus 82 ~~~i~~iDtPG~~-------------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~D 148 (203)
T cd01888 82 VRHVSFVDCPGHE-------------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKID 148 (203)
T ss_pred ccEEEEEECCChH-------------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchh
Confidence 1578999999952 2444555555568999999999864 34444555665655554 6999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhC---CCccccCC
Q 026112 215 TVFPIDVARRAMQIEESLKAN---NSLVQPVV 243 (243)
Q Consensus 215 ~~~~~~~~~~~~~l~~~l~~~---~~~~~pi~ 243 (243)
+..........+.+++.+... +..++|+|
T Consensus 149 l~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vS 180 (203)
T cd01888 149 LVKEEQALENYEQIKKFVKGTIAENAPIIPIS 180 (203)
T ss_pred ccCHHHHHHHHHHHHHHHhccccCCCcEEEEe
Confidence 987666666666777766543 34455553
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.3e-16 Score=131.10 Aligned_cols=136 Identities=21% Similarity=0.242 Sum_probs=89.9
Q ss_pred CEEEEecCCCCchhHHHHHHhccccc-cc---c----------cCC------CCceEE---EEEEEeCCcEEEEeCCCCC
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGV-VR---T----------SDK------PGLTQT---INFFKLGTKLCLVDLPGYG 149 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~-~~---v----------s~~------~gtT~~---~~~~~~~~~~~liDTpG~~ 149 (243)
.+|+++|++|+|||||+++|+..... .. + .++ .+.+.. ..+...+..+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 48999999999999999999864211 00 1 110 011111 1233347789999999974
Q ss_pred CCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHH
Q 026112 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (243)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~ 229 (243)
+. ......++ ..+|++++|+|+..+.......+++.+...++|+++++||+|+.... .....+.++
T Consensus 83 df----------~~~~~~~l---~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~-~~~~~~~l~ 148 (267)
T cd04169 83 DF----------SEDTYRTL---TAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRD-PLELLDEIE 148 (267)
T ss_pred HH----------HHHHHHHH---HHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCC-HHHHHHHHH
Confidence 31 11111222 23899999999988777666777777777789999999999986543 334466777
Q ss_pred HHHhhCCCccc-cC
Q 026112 230 ESLKANNSLVQ-PV 242 (243)
Q Consensus 230 ~~l~~~~~~~~-pi 242 (243)
+.++....+++ ||
T Consensus 149 ~~l~~~~~~~~~Pi 162 (267)
T cd04169 149 EELGIDCTPLTWPI 162 (267)
T ss_pred HHHCCCceeEEecc
Confidence 77776555444 44
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.4e-16 Score=128.05 Aligned_cols=137 Identities=18% Similarity=0.235 Sum_probs=89.4
Q ss_pred EEEEecCCCCchhHHHHHHhccccc-----------------------------ccccCCCCceEEEEEEE---eCCcEE
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTINFFK---LGTKLC 141 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~-----------------------------~~vs~~~gtT~~~~~~~---~~~~~~ 141 (243)
+|+++|.+++|||||+.+|+..... .......|+|++..... .+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4899999999999999999743210 00111456787764433 477899
Q ss_pred EEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC-------CChhhHHHHHHHHhcC-CcEEEEeecC
Q 026112 142 LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQ-TKYQVVLTKT 213 (243)
Q Consensus 142 liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-------~~~~~~~~~~~l~~~~-~p~i~v~nK~ 213 (243)
++||||+.+ +...+......+|++++|+|+..+ ........+..+...+ .|+++|+||+
T Consensus 81 liDtpG~~~-------------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~ 147 (219)
T cd01883 81 ILDAPGHRD-------------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKM 147 (219)
T ss_pred EEECCChHH-------------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcc
Confidence 999999632 222333334459999999998863 3334445555555556 5899999999
Q ss_pred CCCC----hHHHHHHHHHHHHHHhhCC-----CccccCC
Q 026112 214 DTVF----PIDVARRAMQIEESLKANN-----SLVQPVV 243 (243)
Q Consensus 214 D~~~----~~~~~~~~~~l~~~l~~~~-----~~~~pi~ 243 (243)
|+.. ........+.++..+...+ .+++|++
T Consensus 148 Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iS 186 (219)
T cd01883 148 DDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPIS 186 (219)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEee
Confidence 9983 3345556666666665543 3456654
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.9e-16 Score=137.86 Aligned_cols=133 Identities=22% Similarity=0.296 Sum_probs=96.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc-----ccc---------cccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVV---------RTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYA 153 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~-----~~~---------~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~ 153 (243)
...+|+++|..++|||||+++|++.. ... ......|+|.+...... +..+.+|||||+.+
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~--- 87 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD--- 87 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH---
Confidence 45789999999999999999998431 000 11123678888754433 45699999999732
Q ss_pred chHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEE-EEeecCCCCChHHHHH-HHHHHHHH
Q 026112 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPIDVAR-RAMQIEES 231 (243)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i-~v~nK~D~~~~~~~~~-~~~~l~~~ 231 (243)
+...++.....+|++++|+|+..+...++.+++..+...++|.+ +|+||+|+.+..+..+ ..+++++.
T Consensus 88 ----------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~ 157 (394)
T TIGR00485 88 ----------YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (394)
T ss_pred ----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHH
Confidence 33444445556899999999998888888888888888899865 6899999987655433 33466666
Q ss_pred HhhCC
Q 026112 232 LKANN 236 (243)
Q Consensus 232 l~~~~ 236 (243)
+...+
T Consensus 158 l~~~~ 162 (394)
T TIGR00485 158 LSEYD 162 (394)
T ss_pred HHhcC
Confidence 66554
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-17 Score=137.51 Aligned_cols=195 Identities=15% Similarity=0.157 Sum_probs=126.5
Q ss_pred hhhhccccCCCchhhHHHHHhhCCCCcceeeeecccccccCCCCCCCCCCChhHHHHH---HHhhhhhhhhHHHhhc-cc
Q 026112 9 KNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERI---EENIFRNKLEFFAAAK-VS 84 (243)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~ 84 (243)
++++.+.+|+-.+..+|...|+..-+.++....++. +.+..+. ....+.+++ .+.-+++.++.....+ .+
T Consensus 97 a~T~earlqvalAempy~~~rl~r~~~hl~r~~g~~---v~gsges---~id~d~~rllr~kea~lrKeL~~vrrkr~~r 170 (410)
T KOG0410|consen 97 AVTAEARLQVALAEMPYVGGRLERELQHLRRQSGGQ---VKGSGES---IIDRDIRRLLRIKEAQLRKELQRVRRKRQRR 170 (410)
T ss_pred hhhHHHHHhhhhhcCccccchHHHHHHHHHhcCCCc---ccCccch---HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 567788999999999999999977677666555332 3333332 122222111 1111233333332222 22
Q ss_pred CCCCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE----EEeCCcEEEEeCCCCCCCccchHHHHH
Q 026112 85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF----FKLGTKLCLVDLPGYGFAYAKEEVKDA 160 (243)
Q Consensus 85 ~~~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~----~~~~~~~~liDTpG~~~~~~~~~~~~~ 160 (243)
..+...+.|.|+++|++|||||||+++|++.. ....+..+.|-|+.. .+.|..+.+.||-||.... +. .
T Consensus 171 ~gr~~~s~pviavVGYTNaGKsTLikaLT~Aa--l~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdL-P~----~ 243 (410)
T KOG0410|consen 171 VGREGESSPVIAVVGYTNAGKSTLIKALTKAA--LYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDL-PI----Q 243 (410)
T ss_pred hccccCCCceEEEEeecCccHHHHHHHHHhhh--cCccchhheeccchhhhccCCCCcEEEEeechhhhhhC-cH----H
Confidence 44455678999999999999999999999652 444555566666532 2347889999999986421 11 1
Q ss_pred HHHHHHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhcCCc-------EEEEeecCCCC
Q 026112 161 WEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTK-------YQVVLTKTDTV 216 (243)
Q Consensus 161 ~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~~~p-------~i~v~nK~D~~ 216 (243)
+-..+...+.....+|++++|+|.+++..+.. ..++..+...++| ++-|.||.|..
T Consensus 244 LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e 307 (410)
T KOG0410|consen 244 LVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYE 307 (410)
T ss_pred HHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccc
Confidence 22334445555667999999999998754443 5678888887765 78899999975
|
|
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.7e-16 Score=123.58 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=72.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
..++|+++|++|+|||||+++|++. ......+..|..... ....+..+.+|||||... +..+...++.
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~-~~~~~~~t~g~~~~~-~~~~~~~l~l~D~~G~~~----------~~~~~~~~~~ 80 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGE-DIDTISPTLGFQIKT-LEYEGYKLNIWDVGGQKT----------LRPYWRNYFE 80 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccC-CCCCcCCccccceEE-EEECCEEEEEEECCCCHH----------HHHHHHHHhC
Confidence 4579999999999999999999987 333333333322211 112256789999999632 1223333443
Q ss_pred cccCccEEEEEEeCCCCCCh--hhHHHHHHHH---hcCCcEEEEeecCCCCCh
Q 026112 171 TRVSLKRVCLLIDTKWGVKP--RDHELISLME---RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~--~~~~~~~~l~---~~~~p~i~v~nK~D~~~~ 218 (243)
.+|++++|+|++...+. ....+...+. ..+.|+++|+||+|+...
T Consensus 81 ---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 81 ---STDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred ---CCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 38999999998764211 1122222222 246899999999999754
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.6e-16 Score=121.33 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=71.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||++++++.. .++.+.+++.+... ... ...+.+|||||..+ +..+...
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 69 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSY---FVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEE----------FSAMREQ 69 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC---CCcccCCCccceEEEEEEECCEEEEEEEEECCCCcc----------hhHHHHH
Confidence 589999999999999999999873 24444555443211 112 23578999999643 2233444
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH----hcCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~~ 218 (243)
++.. +|++++|+|++...+... ..+...+. ..+.|+++|+||+|+...
T Consensus 70 ~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~ 122 (164)
T cd04145 70 YMRT---GEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQ 122 (164)
T ss_pred HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccccc
Confidence 4443 899999999876422221 22333332 236899999999999754
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.3e-16 Score=146.54 Aligned_cols=113 Identities=25% Similarity=0.385 Sum_probs=87.4
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.+.|.|+++|++|+|||||+++|.+. . ...+..+|.|.+...+. .+..+.||||||+.. +..+..
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~-~-v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~----------F~~m~~ 355 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKT-N-VAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEA----------FTAMRA 355 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhC-C-ccccccCceeeeccEEEEEECCEEEEEEECCCCcc----------chhHHH
Confidence 46799999999999999999999876 3 23445567777765433 267899999999753 122222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
++ ...+|++++|+|+.++...+..+.+..+...++|+++|+||+|+..
T Consensus 356 rg---a~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 356 RG---AQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPG 403 (787)
T ss_pred hh---hhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccc
Confidence 22 2348999999999988888888888888888999999999999964
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3e-16 Score=129.40 Aligned_cols=121 Identities=24% Similarity=0.244 Sum_probs=83.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE---EEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
...+|+++|.||+|||||+|+|++. ....++..+-+|..... ...+..+.+|||||+++....+. .+...+..
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~-~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~---~~r~~~~d 113 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQG-EVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDA---EHRQLYRD 113 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhc-cCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhH---HHHHHHHH
Confidence 4568889999999999999999976 33555544433333221 12357899999999998544331 12223333
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHh--cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER--SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~--~~~p~i~v~nK~D~~~~ 218 (243)
.+...|++++++|+.++.-..+.+++..+.. .+.|+++|+|.+|...+
T Consensus 114 ---~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p 163 (296)
T COG3596 114 ---YLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEP 163 (296)
T ss_pred ---HhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhcc
Confidence 3344899999999887766666666655543 35899999999998765
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-15 Score=136.99 Aligned_cols=98 Identities=17% Similarity=0.137 Sum_probs=64.4
Q ss_pred CcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcC--CcEEEEeecCCC
Q 026112 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ--TKYQVVLTKTDT 215 (243)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~--~p~i~v~nK~D~ 215 (243)
..+.++||||+..+... .. ...+... ...+|+|++|+|+.......+..+++.++..+ .|+++|+||+|+
T Consensus 230 ~QIIFVDTPGIhk~~~~-~L----~k~M~eq---L~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl 301 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQP-HL----QKMLNQQ---LARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQ 301 (741)
T ss_pred CCEEEEECCCCCCccch-HH----HHHHHHH---HhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccC
Confidence 47899999999763221 11 1222222 33499999999998877888888999998877 499999999999
Q ss_pred CChHH--HHHHHHHHHHHHhh---CCCccccCC
Q 026112 216 VFPID--VARRAMQIEESLKA---NNSLVQPVV 243 (243)
Q Consensus 216 ~~~~~--~~~~~~~l~~~l~~---~~~~~~pi~ 243 (243)
....+ .......+...+.. ....++|||
T Consensus 302 ~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVS 334 (741)
T PRK09866 302 QDRNSDDADQVRALISGTLMKGCITPQQIFPVS 334 (741)
T ss_pred CCcccchHHHHHHHHHHHHHhcCCCCceEEEEe
Confidence 75222 22333333333332 234577875
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-16 Score=143.21 Aligned_cols=130 Identities=22% Similarity=0.285 Sum_probs=99.2
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCC--CccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGF--AYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~--~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.||+|||||+|+|+|.+ ..+++.||+|.+-.... .+..+.++|+||.-. +.+.| +...++
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~--q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~D------E~Var~ 75 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN--QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSED------EKVARD 75 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC--ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCch------HHHHHH
Confidence 469999999999999999999995 88999999999976554 377799999999643 22222 234444
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 233 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~ 233 (243)
|+. ....|+++.|+|+++- +....+.=++.+.+.|+++++|++|...........+.+.+.++
T Consensus 76 ~ll-~~~~D~ivnVvDAtnL--eRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG 138 (653)
T COG0370 76 FLL-EGKPDLIVNVVDATNL--ERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLG 138 (653)
T ss_pred HHh-cCCCCEEEEEcccchH--HHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhC
Confidence 444 2458999999999864 55556666677789999999999998776666666666666554
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-15 Score=135.63 Aligned_cols=132 Identities=21% Similarity=0.307 Sum_probs=96.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccc-----ccc---------ccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-----VVR---------TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYA 153 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~-----~~~---------vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~ 153 (243)
...+|+++|..++|||||+++|++... ... .....|+|.+...... +..+.++||||+.
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~---- 86 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA---- 86 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH----
Confidence 457899999999999999999997310 000 1125678888754443 5679999999973
Q ss_pred chHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEE-EEeecCCCCChHHHH-HHHHHHHHH
Q 026112 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPIDVA-RRAMQIEES 231 (243)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i-~v~nK~D~~~~~~~~-~~~~~l~~~ 231 (243)
.+..........+|++++|+|+..+....+.+++..+...++|++ +++||+|+....+.. .....+++.
T Consensus 87 ---------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~ 157 (396)
T PRK00049 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (396)
T ss_pred ---------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHH
Confidence 234444444566999999999998888888889999998999976 589999998644433 334466666
Q ss_pred HhhC
Q 026112 232 LKAN 235 (243)
Q Consensus 232 l~~~ 235 (243)
+...
T Consensus 158 l~~~ 161 (396)
T PRK00049 158 LSKY 161 (396)
T ss_pred HHhc
Confidence 6653
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-15 Score=140.91 Aligned_cols=113 Identities=22% Similarity=0.351 Sum_probs=86.3
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CC-cEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GT-KLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~-~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
.+.|+|+++|++|+|||||+++|.+. . ......+|+|.+...+.. +. .+.+|||||+.. +..+.
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~-~-v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~----------F~~~r 152 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKT-K-VAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEA----------FTSMR 152 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhC-C-cccccCCceeecceEEEEEECCCcEEEEEECCCCcc----------hhhHH
Confidence 46689999999999999999999987 3 233455678877644332 33 799999999743 12222
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
.+ ....+|++++|+|+.++..++..+.+..+...++|+++++||+|+..
T Consensus 153 ~r---ga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 153 AR---GAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPE 201 (587)
T ss_pred Hh---hhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECccccc
Confidence 22 23348999999999988878888888888888999999999999964
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-15 Score=137.90 Aligned_cols=133 Identities=21% Similarity=0.256 Sum_probs=96.5
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccc--------------cccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWG--------------VVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAY 152 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~--------------~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~ 152 (243)
....+|+++|.+++|||||+++|+.... ........|.|.+..... .+..+.++||||+.+
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~-- 156 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD-- 156 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH--
Confidence 4567899999999999999999996311 001122356777764332 367899999999732
Q ss_pred cchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCChHHHHH-HHHHHHH
Q 026112 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVAR-RAMQIEE 230 (243)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~~~~~~-~~~~l~~ 230 (243)
++.........+|++++|+|+..+...+..+++..+...++| +++++||+|+.+.++..+ ..+++++
T Consensus 157 -----------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~ 225 (478)
T PLN03126 157 -----------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRE 225 (478)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHH
Confidence 333334444458999999999988888888899989889998 788999999987555433 3346777
Q ss_pred HHhhC
Q 026112 231 SLKAN 235 (243)
Q Consensus 231 ~l~~~ 235 (243)
.+...
T Consensus 226 ~l~~~ 230 (478)
T PLN03126 226 LLSSY 230 (478)
T ss_pred HHHhc
Confidence 76653
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.1e-16 Score=132.65 Aligned_cols=131 Identities=19% Similarity=0.193 Sum_probs=92.3
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE----eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
--|.++|.|||||||||++++... ..+++||+||..++... .+.++.+-|.||+.+..+.. ..+..+|
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~Ak--PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G------~GLG~~F 231 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAK--PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEG------VGLGLRF 231 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcC--CcccCCccccccCcccEEEecCCCcEEEecCcccccccccC------CCccHHH
Confidence 367899999999999999999984 88999999999875433 35679999999998754322 1344566
Q ss_pred HhcccCccEEEEEEeCCCCC----ChhhHHHHHHHHhc-----CCcEEEEeecCCCCCh-HHHHHHHHHHHHH
Q 026112 169 VSTRVSLKRVCLLIDTKWGV----KPRDHELISLMERS-----QTKYQVVLTKTDTVFP-IDVARRAMQIEES 231 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~----~~~~~~~~~~l~~~-----~~p~i~v~nK~D~~~~-~~~~~~~~~l~~~ 231 (243)
+++.+.+.++++|||.+..- .+.-..+...|... .+|.++|+||+|+..+ +++....+.+.+.
T Consensus 232 LrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~ 304 (369)
T COG0536 232 LRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEA 304 (369)
T ss_pred HHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHh
Confidence 66666699999999976421 11123344445433 6899999999996554 4444444444433
|
|
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.7e-16 Score=120.67 Aligned_cols=110 Identities=15% Similarity=0.124 Sum_probs=70.2
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
++|+++|.+|||||||++++.+.. ....+.+|+.+... ... ...+.+|||||... +..+...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 68 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI---FVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQ----------FTAMRDL 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC---CCcccCCchhhhEEEEEEECCEEEEEEEEECCCccc----------cchHHHH
Confidence 589999999999999999999763 22333444432211 111 24567899999643 1223333
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
++.. +|++++|+|.+...+... ..+++.+.. .+.|+++|+||+|+...
T Consensus 69 ~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 121 (163)
T cd04136 69 YIKN---GQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDE 121 (163)
T ss_pred Hhhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 4333 899999999875422222 233444432 25899999999999753
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=120.26 Aligned_cols=136 Identities=16% Similarity=0.123 Sum_probs=80.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
..+|+++|.+|+|||||++++++...........|.+........ ...+.+|||||... +..+...+
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~ 73 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES----------FRSITRSY 73 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHHHH
Confidence 369999999999999999999987321212223333332222222 34788999999421 22233333
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
+. .+|++++|+|++...+..+ ..++..+.. .+.|+++|+||+|+...... ..+..+......+..++++
T Consensus 74 ~~---~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~e~ 146 (168)
T cd01866 74 YR---GAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREV--SYEEGEAFAKEHGLIFMET 146 (168)
T ss_pred hc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCC--CHHHHHHHHHHcCCEEEEE
Confidence 33 3899999999875422222 234444433 25899999999999743221 1122333334444445554
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-15 Score=118.74 Aligned_cols=112 Identities=17% Similarity=0.122 Sum_probs=70.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.+|+++|.+|+|||||++++++........+..+.+....... ....+.+|||||... +..+...++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~ 70 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER----------FQTMHASYY 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchh----------hhhhhHHHh
Confidence 3799999999999999999987632111111111111111111 134678999999532 233444444
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc--CCcEEEEeecCCCCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVF 217 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~--~~p~i~v~nK~D~~~ 217 (243)
.. +|++++|+|.+.+.+..+ ..++..+... +.|+++|+||+|+..
T Consensus 71 ~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~ 118 (161)
T cd04124 71 HK---AHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDP 118 (161)
T ss_pred CC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCch
Confidence 43 899999999876533322 3455555443 689999999999853
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.7e-16 Score=119.80 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=72.0
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE--Ee-C--CcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~--~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
+|+++|++|+|||||+|+|++.. ...+..++++.+.... .. + ..+.+|||||... +..+...+
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~----------~~~~~~~~ 69 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDT--FDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQER----------FRSLIPSY 69 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHHHH
Confidence 79999999999999999999883 2234455555554222 22 2 3588999999532 22333444
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHH-Hhc--CCcEEEEeecCCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLM-ERS--QTKYQVVLTKTDTVF 217 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l-~~~--~~p~i~v~nK~D~~~ 217 (243)
+. .+|++++|+|.+.+.+... ..++..+ ... +.|+++|+||+|+..
T Consensus 70 ~~---~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~ 119 (161)
T cd01861 70 IR---DSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSD 119 (161)
T ss_pred hc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccc
Confidence 43 3899999999876422222 2344433 233 389999999999954
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.8e-15 Score=122.47 Aligned_cols=125 Identities=18% Similarity=0.242 Sum_probs=83.0
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCC---------------CCceEEE---EEEEe----------CCcEEEEeC
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDK---------------PGLTQTI---NFFKL----------GTKLCLVDL 145 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~---------------~gtT~~~---~~~~~----------~~~~~liDT 145 (243)
+|+++|..++|||||+++|+...+ ...... .|.|... ..... +..+.+|||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g-~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAG-IISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC-CCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 799999999999999999987532 111111 1222221 11111 456889999
Q ss_pred CCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC------ChH
Q 026112 146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV------FPI 219 (243)
Q Consensus 146 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~------~~~ 219 (243)
||+.+. ......+++ .+|++++|+|+..+.......++..+...++|+++|+||+|+. ++.
T Consensus 81 PG~~~f----------~~~~~~~l~---~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~ 147 (222)
T cd01885 81 PGHVDF----------SSEVTAALR---LCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPE 147 (222)
T ss_pred CCcccc----------HHHHHHHHH---hcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCHH
Confidence 998541 112222332 3999999999998888888888888877789999999999986 455
Q ss_pred HHHHHHHHHHHHH
Q 026112 220 DVARRAMQIEESL 232 (243)
Q Consensus 220 ~~~~~~~~l~~~l 232 (243)
+....+..+.+.+
T Consensus 148 ~~~~~~~~ii~~~ 160 (222)
T cd01885 148 EAYQRLARIIEQV 160 (222)
T ss_pred HHHHHHHHHHHHH
Confidence 4444443333333
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=117.73 Aligned_cols=110 Identities=17% Similarity=0.168 Sum_probs=71.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccc-cCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~v-s~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
++|+++|.+|+|||||+|++++.. .... .+..+.+....... ....+.+|||||... +......+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~ 69 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGK-FDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER----------FRSITPSY 69 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCc-CCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHH----------HHHHHHHH
Confidence 479999999999999999999873 2222 22333333332222 235688999999632 22333344
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTV 216 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~ 216 (243)
+. .+|++++|+|+++...... ..++..+... ..|+++|+||+|+.
T Consensus 70 ~~---~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 70 YR---GAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred hc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 33 3899999999876321111 3355555443 48999999999997
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.67 E-value=5e-16 Score=120.65 Aligned_cols=111 Identities=19% Similarity=0.186 Sum_probs=71.7
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (243)
+|+++|.+|+|||||++++++.. .....+..+.+..... ..+..+.+|||||... +......++..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~~~-~~~~~~~i~D~~G~~~----------~~~~~~~~~~~-- 66 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVETVE-YKNVSFTVWDVGGQDK----------IRPLWKHYYEN-- 66 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEEEE-ECCEEEEEEECCCChh----------hHHHHHHHhcc--
Confidence 58999999999999999999983 3333344444333222 2356899999999643 11222333333
Q ss_pred CccEEEEEEeCCCCC--ChhhHHHHHHHH---hcCCcEEEEeecCCCCChH
Q 026112 174 SLKRVCLLIDTKWGV--KPRDHELISLME---RSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 174 ~~d~v~~vvd~~~~~--~~~~~~~~~~l~---~~~~p~i~v~nK~D~~~~~ 219 (243)
+|++++|+|+..+. ......+...+. ..+.|+++|+||+|+....
T Consensus 67 -~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 116 (158)
T cd00878 67 -TNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL 116 (158)
T ss_pred -CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc
Confidence 89999999988641 111112222222 2468999999999998644
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.8e-16 Score=122.33 Aligned_cols=112 Identities=17% Similarity=0.186 Sum_probs=68.3
Q ss_pred EEEEecCCCCchhHHHHHHhccccc--ccccCCCCceEEEEE---EEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGV--VRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~--~~vs~~~gtT~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
+|+++|++|+|||||+|+|++.... ........+|..... ...+..+.+|||||... +..+...+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~ 70 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQES----------LRSLWDKY 70 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChh----------hHHHHHHH
Confidence 4899999999999999999875210 011111222332222 12367899999999743 12223333
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHH-HHH---hcCCcEEEEeecCCCCCh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELIS-LME---RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~-~l~---~~~~p~i~v~nK~D~~~~ 218 (243)
+. .+|++++|+|+........ ..++. .+. ..+.|+++|+||+|+...
T Consensus 71 ~~---~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 71 YA---ECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred hC---CCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 33 3899999999875321111 12222 222 236899999999998764
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.4e-16 Score=119.91 Aligned_cols=111 Identities=18% Similarity=0.250 Sum_probs=71.3
Q ss_pred EEEEecCCCCchhHHHHHHhccc-ccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~-~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (243)
+|+++|.+|||||||+++|++.. ......+..|.+... +...+..+.+|||||... +..+...++.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~-~~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~-- 67 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES-FEKGNLSFTAFDMSGQGK----------YRGLWEHYYK-- 67 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE-EEECCEEEEEEECCCCHh----------hHHHHHHHHc--
Confidence 48899999999999999999863 122334444443322 222356789999999642 1223334443
Q ss_pred cCccEEEEEEeCCCCCChhh-HHHHHHH-H-----hcCCcEEEEeecCCCCCh
Q 026112 173 VSLKRVCLLIDTKWGVKPRD-HELISLM-E-----RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~-~~~~~~l-~-----~~~~p~i~v~nK~D~~~~ 218 (243)
.+|++++|+|++...+... ...+..+ . ..+.|+++|+||+|+...
T Consensus 68 -~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 68 -NIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred -cCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 3999999999886532211 1222222 2 236899999999999754
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-15 Score=117.93 Aligned_cols=110 Identities=15% Similarity=0.131 Sum_probs=69.8
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
++|+++|.+|+|||||+|++++.. ....+.+|+.+... ... ...+.+|||||... +..+...
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~l~~~ 68 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNH---FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE----------YSAMRDQ 68 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC---CcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcc----------hHHHHHH
Confidence 589999999999999999999873 22333334332211 111 23477899999632 2334444
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH----hcCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~~ 218 (243)
|+.. ++++++|+|.....+... ..+...+. ..+.|+++|+||+|+...
T Consensus 69 ~~~~---~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~ 121 (162)
T cd04138 69 YMRT---GEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAAR 121 (162)
T ss_pred HHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 5544 899999999775322122 12333332 236899999999999753
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-15 Score=121.22 Aligned_cols=111 Identities=20% Similarity=0.267 Sum_probs=71.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
..+|+++|.+|+|||||+++|++... ....+..+.+.. .....+..+.++||||... ....| ..++.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~-~~~~~t~~~~~~-~~~~~~~~~~l~D~~G~~~------~~~~~----~~~~~- 81 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEV-VHTSPTIGSNVE-EIVYKNIRFLMWDIGGQES------LRSSW----NTYYT- 81 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccceE-EEEECCeEEEEEECCCCHH------HHHHH----HHHhh-
Confidence 46899999999999999999987632 223333333221 1222356799999999632 12222 23333
Q ss_pred ccCccEEEEEEeCCCCCCh--hhHHHHHHHHh---cCCcEEEEeecCCCCC
Q 026112 172 RVSLKRVCLLIDTKWGVKP--RDHELISLMER---SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~--~~~~~~~~l~~---~~~p~i~v~nK~D~~~ 217 (243)
.+|++++|+|++..... ....+.+.+.. .+.|+++++||+|+..
T Consensus 82 --~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 82 --NTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred --cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 39999999998764221 12233333332 2589999999999875
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-15 Score=118.17 Aligned_cols=111 Identities=20% Similarity=0.213 Sum_probs=70.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|||||||+|++++... .....+.++.+. ..... + ..+.+|||||... +..+...
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~ 71 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEF--NLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQER----------YRAITSA 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHH----------HHHHHHH
Confidence 6899999999999999999998732 222223333222 11112 2 3688999999532 2333344
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
++. .++++++|+|.++..+... ..++..+.. .+.|+++|+||+|+...
T Consensus 72 ~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~ 123 (165)
T cd01868 72 YYR---GAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHL 123 (165)
T ss_pred HHC---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 443 3899999999875322222 234444433 25899999999998754
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.4e-16 Score=121.22 Aligned_cols=111 Identities=18% Similarity=0.174 Sum_probs=70.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
.++|+++|.+|+|||||+++|..... ....+..|.+.. .....+..+.+|||||... +..+...++..
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~-~~~~~t~g~~~~-~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~~ 76 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVE-TVTYKNVKFNVWDVGGQDK----------IRPLWRHYYTG 76 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCC-ccccCCcccceE-EEEECCEEEEEEECCCCHH----------HHHHHHHHhcc
Confidence 47999999999999999999987632 222222222221 1112356799999999632 12223334433
Q ss_pred ccCccEEEEEEeCCCCCCh--hhHHHHHHHHh---cCCcEEEEeecCCCCC
Q 026112 172 RVSLKRVCLLIDTKWGVKP--RDHELISLMER---SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~--~~~~~~~~l~~---~~~p~i~v~nK~D~~~ 217 (243)
+|++++|+|++..... ....+.+.+.. .+.|+++|+||+|+..
T Consensus 77 ---a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 77 ---TQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred ---CCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 8999999998764221 22233333332 3589999999999864
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.1e-15 Score=121.55 Aligned_cols=128 Identities=21% Similarity=0.194 Sum_probs=90.3
Q ss_pred EEEEecCCCCchhHHHHHHhccccc-----ccc-------cCCCCceEEE---------------------------EEE
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGV-----VRT-------SDKPGLTQTI---------------------------NFF 134 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~-----~~v-------s~~~gtT~~~---------------------------~~~ 134 (243)
+|+++|..++|||||+++|+..... ... .-..|.|..+ ...
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 4789999999999999999853100 000 0001222110 011
Q ss_pred EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcc--cCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeec
Q 026112 135 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR--VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTK 212 (243)
Q Consensus 135 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK 212 (243)
..+..+.++||||+.. +........ ..+|++++|+|+..+....+.+++.++...++|+++|+||
T Consensus 81 ~~~~~i~liDtpG~~~-------------~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK 147 (224)
T cd04165 81 KSSKLVTFIDLAGHER-------------YLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTK 147 (224)
T ss_pred eCCcEEEEEECCCcHH-------------HHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEC
Confidence 1256799999999732 222222222 2489999999999988899999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHhh
Q 026112 213 TDTVFPIDVARRAMQIEESLKA 234 (243)
Q Consensus 213 ~D~~~~~~~~~~~~~l~~~l~~ 234 (243)
+|+............+.+.+..
T Consensus 148 ~D~~~~~~~~~~~~~l~~~L~~ 169 (224)
T cd04165 148 IDLAPANILQETLKDLKRILKV 169 (224)
T ss_pred ccccCHHHHHHHHHHHHHHhcC
Confidence 9999887788888888887763
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=143.76 Aligned_cols=113 Identities=21% Similarity=0.372 Sum_probs=85.5
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE-------eCCcEEEEeCCCCCCCccchHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-------LGTKLCLVDLPGYGFAYAKEEVKDAWE 162 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~-------~~~~~~liDTpG~~~~~~~~~~~~~~~ 162 (243)
.+.|.|+++|++|+|||||+++|++.. ...+..+|.|.++..+. .+..+.+|||||+.. +.
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~--~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~----------F~ 309 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQ--IAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA----------FS 309 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhcc--CccccCCccccccceEEEEEEecCCceEEEEEECCcHHH----------HH
Confidence 467899999999999999999999873 22344566666543222 146899999999632 22
Q ss_pred HHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 163 ~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
.+...++. .+|++++|+|+..+...+..+.+..+...++|+++|+||+|+..
T Consensus 310 ~mr~rg~~---~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~ 361 (742)
T CHL00189 310 SMRSRGAN---VTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKAN 361 (742)
T ss_pred HHHHHHHH---HCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccc
Confidence 33333333 38999999999888777777888888888999999999999975
|
|
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-15 Score=118.56 Aligned_cols=114 Identities=19% Similarity=0.181 Sum_probs=71.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|++|+|||||++++++........+..+.+........ ...+.+|||||... +..+...+
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~----------~~~~~~~~ 72 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER----------FRTITTAY 72 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHH----------HHHHHHHH
Confidence 369999999999999999999987321222222232222222221 24688999999532 22233333
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
+. .+|++++|+|++.+.+... ..++..+.. .+.|+++|.||+|+...
T Consensus 73 ~~---~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~ 123 (167)
T cd01867 73 YR---GAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEK 123 (167)
T ss_pred hC---CCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 33 3899999999876422222 234444433 35799999999999853
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-15 Score=122.00 Aligned_cols=125 Identities=21% Similarity=0.293 Sum_probs=76.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE-----eCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~-----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
|.|+++|++|+|||||++.|..... ....+.++....... .+..+.+|||||+.. . ......
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~---~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~------~----~~~~~~ 67 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKY---RSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPK------L----RDKLLE 67 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC---CCccCcEeecceEEEeecCCCCceEEEEECCCCHH------H----HHHHHH
Confidence 5799999999999999999998731 112222222222222 156799999999742 1 222233
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh---HHHHHHHH-----hcCCcEEEEeecCCCCChHHHHHHHHHHHHHH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD---HELISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 232 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~---~~~~~~l~-----~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l 232 (243)
++... ++++++|+|+........ ..+...+. ..++|+++|+||+|+............+++++
T Consensus 68 ~~~~~--~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei 138 (203)
T cd04105 68 TLKNS--AKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKEL 138 (203)
T ss_pred HHhcc--CCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHH
Confidence 33331 399999999876421111 12222222 13799999999999986554444455555444
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-15 Score=116.67 Aligned_cols=111 Identities=21% Similarity=0.208 Sum_probs=69.5
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe-----CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL-----GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~-----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
+|+++|.+|+|||||++++++... . ....+....+... ... +..+.+|||||.. .+..+..
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~ 69 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIF-T-KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE----------EFDAITK 69 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-C-CCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchH----------HHHHhHH
Confidence 799999999999999999998731 1 1111222222211 111 3468899999942 1334444
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh--cCCcEEEEeecCCCCChH
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~--~~~p~i~v~nK~D~~~~~ 219 (243)
.+++. +|++++|+|.....+... ..++..+.. .+.|+++|+||+|+....
T Consensus 70 ~~~~~---~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 122 (162)
T cd04106 70 AYYRG---AQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQA 122 (162)
T ss_pred HHhcC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhccccc
Confidence 45443 899999999875422211 233333332 368999999999997543
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-15 Score=126.78 Aligned_cols=128 Identities=20% Similarity=0.181 Sum_probs=92.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
....|+++|.||+|||||.|.+.|. ++..++....||+.-...- ....+.++||||+........- .....+...
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~-kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~-~l~~s~lq~ 148 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQ-KVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRH-HLMMSVLQN 148 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCC-ccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhH-HHHHHhhhC
Confidence 3568999999999999999999999 8899999999998764432 2567999999998764322110 111223334
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhc-CCcEEEEeecCCCCChHH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-QTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~-~~p~i~v~nK~D~~~~~~ 220 (243)
+......+|+|++|+|++..-......++..+... .+|-++|+||.|+..+..
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~ 202 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKR 202 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhh
Confidence 44555669999999998853333444556555543 689999999999987644
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-15 Score=138.45 Aligned_cols=111 Identities=23% Similarity=0.354 Sum_probs=80.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCC-CceEEEEEEEe---------------------CCcEEEEeCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTINFFKL---------------------GTKLCLVDLPGY 148 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~-gtT~~~~~~~~---------------------~~~~~liDTpG~ 148 (243)
+.|.|+++|++|+|||||+|+|++.. .....+ ++|+++..... ...+.+|||||+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~---v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~ 79 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSA---VAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGH 79 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc---cccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCc
Confidence 45899999999999999999999872 223333 35554211110 023889999996
Q ss_pred CCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
.. +..+...++. .+|++++|+|++++......+.+..+...++|+++|+||+|+..
T Consensus 80 e~----------f~~l~~~~~~---~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 80 EA----------FTNLRKRGGA---LADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred Hh----------HHHHHHHHHh---hCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccc
Confidence 32 2223333333 39999999999988778888888888888999999999999974
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.1e-16 Score=117.52 Aligned_cols=101 Identities=20% Similarity=0.206 Sum_probs=65.8
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (243)
+|+++|.+|+|||||+|+|++.. .. +. .|..+.+. ..+|||||... .....+..+. ....
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~-~~----~~-~t~~~~~~-----~~~iDt~G~~~-----~~~~~~~~~~----~~~~ 61 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE-IL----YK-KTQAVEYN-----DGAIDTPGEYV-----ENRRLYSALI----VTAA 61 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc-cc----cc-cceeEEEc-----CeeecCchhhh-----hhHHHHHHHH----HHhh
Confidence 79999999999999999999873 11 11 12222221 17899999621 0111122222 2234
Q ss_pred CccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 174 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 174 ~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
.+|++++|+|++.+.+.....+.+. ...|+++|+||+|+.+
T Consensus 62 ~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 62 DADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAE 102 (142)
T ss_pred cCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCC
Confidence 5999999999887655444444333 2459999999999975
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-15 Score=122.63 Aligned_cols=140 Identities=19% Similarity=0.241 Sum_probs=88.0
Q ss_pred EEEEecCCCCchhHHHHHHhccccccccc-CCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs-~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
+|+++|.+|+||||++|.|+|.. ....+ ...++|..+... ..|..+.+|||||+.++...+. .....+.+...
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~-~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~--~~~~~i~~~l~ 78 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKE-VFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDE--EIIREIKRCLS 78 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS--SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHH--HHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhccc-ceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHH--HHHHHHHHHHH
Confidence 79999999999999999999984 22222 234455555433 2378899999999977643321 11222332222
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhc-----CCcEEEEeecCCCCChHHHHHHHH-----HHHHHHhhCCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLTKTDTVFPIDVARRAM-----QIEESLKANNS 237 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~-----~~p~i~v~nK~D~~~~~~~~~~~~-----~l~~~l~~~~~ 237 (243)
......|++++|++.. .++..+...++.+... ...+++|+|.+|...+..+...+. .+++.+...+.
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~ 155 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGG 155 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCC
Confidence 2344589999999988 7888888888777643 457999999999887765433332 35555555443
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=119.15 Aligned_cols=112 Identities=18% Similarity=0.172 Sum_probs=69.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.+|+++|.+|+|||||+|++++........+..+......... ....+.+|||||... +..+...++
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~~ 70 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE----------YLEVRNEFY 70 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHH----------HHHHHHHHh
Confidence 3799999999999999999998742221122111111111111 235688999999632 122333333
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHHh--------cCCcEEEEeecCCCCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER--------SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~--------~~~p~i~v~nK~D~~~ 217 (243)
. .+|++++|+|.++..+... ..++..+.. .+.|+++|+||+|+..
T Consensus 71 ~---~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 124 (168)
T cd04119 71 K---DTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK 124 (168)
T ss_pred c---cCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc
Confidence 3 3899999999876422111 234433332 3578999999999974
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=118.87 Aligned_cols=110 Identities=22% Similarity=0.206 Sum_probs=68.4
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (243)
+|+++|.+|+|||||+++|.... .....+..+.+.. .....+..+.+|||||... +..+...++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~--- 65 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGE-VVTTIPTIGFNVE-TVTYKNLKFQVWDLGGQTS----------IRPYWRCYYS--- 65 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCC-CcCcCCccCcCeE-EEEECCEEEEEEECCCCHH----------HHHHHHHHhc---
Confidence 58999999999999999997763 2211111111111 1112356789999999642 1222333333
Q ss_pred CccEEEEEEeCCCCCC--hhhHHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 174 SLKRVCLLIDTKWGVK--PRDHELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 174 ~~d~v~~vvd~~~~~~--~~~~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
.+|++++|+|++.... .....+...++. .+.|+++|+||+|+...
T Consensus 66 ~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 66 NTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence 3999999999875321 112233333332 36899999999999754
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.6e-15 Score=116.84 Aligned_cols=111 Identities=17% Similarity=0.180 Sum_probs=69.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
++|+++|.+|+|||||++++++... .....+..+.+.. .... ...+.+|||||... +......
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~ 70 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER----------FRTITSS 70 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHh----------HHHHHHH
Confidence 5899999999999999999998631 1222232232222 1111 34688999999532 2223333
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
++. .+|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+...
T Consensus 71 ~~~---~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 122 (166)
T cd01869 71 YYR---GAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDK 122 (166)
T ss_pred HhC---cCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccc
Confidence 433 3899999999876421111 233444433 25799999999998754
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-15 Score=117.35 Aligned_cols=114 Identities=17% Similarity=0.157 Sum_probs=69.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE-EEEe--CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~-~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.+|+++|.+|+|||||++++++........+..|++.... .... ...+.+|||||... +..+...++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~----------~~~~~~~~~ 71 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQER----------YRTITTAYY 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH----------HHHHHHHHc
Confidence 5899999999999999999998732111112112111111 1111 24688999999532 122333333
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCChH
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~~ 219 (243)
..+|++++|+|.+...+... ..+++.+.. ...|+++|+||+|+....
T Consensus 72 ---~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 122 (165)
T cd01865 72 ---RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDER 122 (165)
T ss_pred ---cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCccc
Confidence 34999999999875421111 234444433 257899999999997543
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-15 Score=142.84 Aligned_cols=131 Identities=19% Similarity=0.221 Sum_probs=97.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccc----ccccc------------CCCCceEEEE---EEEeCCcEEEEeCCCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWG----VVRTS------------DKPGLTQTIN---FFKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~----~~~vs------------~~~gtT~~~~---~~~~~~~~~liDTpG~~~~ 151 (243)
...+|+++|.+|+|||||+|+|+.... ...+. ...|+|.+.. +...+..+.++||||+.+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~- 87 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD- 87 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH-
Confidence 456999999999999999999974311 11122 2556777653 333478899999999743
Q ss_pred ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHH
Q 026112 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES 231 (243)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~ 231 (243)
+..........+|++++|+|+..++..++..++..+...++|+++++||+|+.... .....+.+++.
T Consensus 88 ------------f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~-~~~~~~~i~~~ 154 (693)
T PRK00007 88 ------------FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGAD-FYRVVEQIKDR 154 (693)
T ss_pred ------------HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHHHHH
Confidence 11112222333899999999999999999999999999999999999999998654 55677778877
Q ss_pred HhhC
Q 026112 232 LKAN 235 (243)
Q Consensus 232 l~~~ 235 (243)
+...
T Consensus 155 l~~~ 158 (693)
T PRK00007 155 LGAN 158 (693)
T ss_pred hCCC
Confidence 7664
|
|
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=134.76 Aligned_cols=147 Identities=21% Similarity=0.223 Sum_probs=104.5
Q ss_pred cCCCC--CCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeC---CcEEEEeCCCCCCCccchHHH
Q 026112 84 SSSFP--APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVK 158 (243)
Q Consensus 84 ~~~~~--~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~ 158 (243)
.+++| .++.++++++|+||+|||||+|.++... ..+.++++||+.....+.+ ..|+++||||+.+. +.+..
T Consensus 158 l~rlPsIDp~trTlllcG~PNVGKSSf~~~vtrad--vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~--plEdr 233 (620)
T KOG1490|consen 158 LSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRAD--DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDR--PEEDR 233 (620)
T ss_pred HhcCCCCCCCcCeEEEecCCCCCcHhhcccccccc--cccCCcccccchhhhhhhhhheeeeeecCCccccCc--chhhh
Confidence 44555 5788999999999999999999999884 7799999999988766554 36889999998763 22222
Q ss_pred HHHHHHHHHHHhcccCccEEEEEEeCCC--CCChhh-HHHHHHHHhc--CCcEEEEeecCCCCChHHHHHHHHHHHHHHh
Q 026112 159 DAWEELVKEYVSTRVSLKRVCLLIDTKW--GVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLK 233 (243)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~v~~vvd~~~--~~~~~~-~~~~~~l~~~--~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~ 233 (243)
..++...-..+.+.. -+|+|++|.+. +.+... ..++..++.+ +.|+|+|+||+|.+.++++......+.+.+.
T Consensus 234 N~IEmqsITALAHLr--aaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~ 311 (620)
T KOG1490|consen 234 NIIEMQIITALAHLR--SAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTII 311 (620)
T ss_pred hHHHHHHHHHHHHhh--hhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHH
Confidence 233322223333333 34889999654 444333 4566666654 7899999999999999888766666666666
Q ss_pred hCC
Q 026112 234 ANN 236 (243)
Q Consensus 234 ~~~ 236 (243)
+.+
T Consensus 312 ~~~ 314 (620)
T KOG1490|consen 312 DDG 314 (620)
T ss_pred hcc
Confidence 554
|
|
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.6e-15 Score=126.81 Aligned_cols=123 Identities=21% Similarity=0.243 Sum_probs=85.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE---EEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
+.++|+++|.+|+||||++|+|++. +...++...++|..... ...|..+.+|||||+.+... ..+.....+..
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~-~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~---~~e~~~~~ik~ 112 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGE-RIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGY---INDQAVNIIKR 112 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHH---HHHHHHHHHHH
Confidence 4679999999999999999999998 55566666655444322 22478899999999986421 22222334444
Q ss_pred HHhcccCccEEEEEEeCC-CCCChhhHHHHHHHHhc-----CCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTK-WGVKPRDHELISLMERS-----QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~-~~~~~~~~~~~~~l~~~-----~~p~i~v~nK~D~~~~ 218 (243)
++.. ...|+++||.+.. ......+..+++.+... ..++++|+|++|..++
T Consensus 113 ~l~~-~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 113 FLLG-KTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred Hhhc-CCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 4433 3589999996533 24666767777766543 4689999999998854
|
|
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-15 Score=120.25 Aligned_cols=112 Identities=21% Similarity=0.282 Sum_probs=71.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
..++|+++|.+|||||||+|++.+. ....+.+..+.+.. .....+..+.++||||... +......|+.
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~G~~~----------~~~~~~~~~~ 83 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKND-RLAQHQPTQHPTSE-ELAIGNIKFTTFDLGGHQQ----------ARRLWKDYFP 83 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcC-CCcccCCccccceE-EEEECCEEEEEEECCCCHH----------HHHHHHHHhC
Confidence 3479999999999999999999987 32333222222211 1112356789999999642 1223334443
Q ss_pred cccCccEEEEEEeCCCCC--ChhhHHHHHHHH---hcCCcEEEEeecCCCCC
Q 026112 171 TRVSLKRVCLLIDTKWGV--KPRDHELISLME---RSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~--~~~~~~~~~~l~---~~~~p~i~v~nK~D~~~ 217 (243)
.+|++++|+|++... ......+.+.+. ..+.|+++|+||+|+..
T Consensus 84 ---~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 84 ---EVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred ---CCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 399999999987641 112223333332 24789999999999863
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=141.39 Aligned_cols=132 Identities=26% Similarity=0.257 Sum_probs=88.2
Q ss_pred cCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCc
Q 026112 99 GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSL 175 (243)
Q Consensus 99 G~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (243)
|.||+|||||+|+|++.. ..+++.+|+|.+..... .+..+.++||||..+-...... +.....++. ...+
T Consensus 1 G~pNvGKSSL~N~Ltg~~--~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~----e~v~~~~l~-~~~a 73 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN--QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLE----EEVARDYLL-NEKP 73 (591)
T ss_pred CCCCCCHHHHHHHHhCCC--CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchH----HHHHHHHHh-hcCC
Confidence 899999999999999984 57899999999875432 3667999999997542211110 122233332 2358
Q ss_pred cEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 176 KRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 176 d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
|++++|+|+++. +....+...+.+.+.|+++|+||+|+..........+.+.+.+ +.+++|+
T Consensus 74 DvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~l---g~pvv~t 135 (591)
T TIGR00437 74 DLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERL---GVPVVPT 135 (591)
T ss_pred CEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHc---CCCEEEE
Confidence 999999998863 3344555556667899999999999865433333334444443 3455554
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=7e-15 Score=136.41 Aligned_cols=110 Identities=25% Similarity=0.411 Sum_probs=79.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCC-CceEEEEEEEe---------C------------CcEEEEeCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTINFFKL---------G------------TKLCLVDLPGY 148 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~-gtT~~~~~~~~---------~------------~~~~liDTpG~ 148 (243)
+.|.|+++|++|+|||||+|+|.+.. .++..+ +.|++...... + ..+.+|||||+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~---v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTA---VAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcc---cccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 56899999999999999999998762 233333 34444311110 0 13789999997
Q ss_pred CCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
.. +..+..... ..+|++++|+|++.++.....+.+..+...++|+++++||+|+.
T Consensus 82 e~----------f~~~~~~~~---~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 82 EA----------FTNLRKRGG---ALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred HH----------HHHHHHHhH---hhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCc
Confidence 43 122222222 33899999999998887888888888888899999999999986
|
|
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.8e-15 Score=121.11 Aligned_cols=114 Identities=21% Similarity=0.176 Sum_probs=73.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+++|++. ......+..+.+..+..... ...+.+|||||... +..+...
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~~~ 81 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISS-SVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER----------FRTLTSS 81 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC-CCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchh----------hHHHHHH
Confidence 3579999999999999999999987 33334444443333322222 24688999999643 2223334
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhH--HHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
++.. +|++++|+|.+...+.... .+...+.. .+.|+++|+||+|+...
T Consensus 82 ~~~~---~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~ 135 (211)
T PLN03118 82 YYRN---AQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESE 135 (211)
T ss_pred HHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 4433 8999999998764222222 13233332 25789999999999754
|
|
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.7e-15 Score=115.63 Aligned_cols=114 Identities=21% Similarity=0.248 Sum_probs=71.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|+|||||++++.+...........++......... + ..+.+|||||... +..+...+
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~~~ 72 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQER----------FRTITQSY 72 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHH----------HHHHHHHH
Confidence 369999999999999999999876211111122222122222222 2 3688999999421 22333334
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
+. .+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+...
T Consensus 73 ~~---~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 123 (165)
T cd01864 73 YR---SANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123 (165)
T ss_pred hc---cCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 33 3899999999876532222 345554543 36899999999999754
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-15 Score=118.33 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=68.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||+|++++.. ....+.+++.+.. .... ...+.+|||||... +..+...
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~----------~~~~~~~ 67 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGH---FVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEE----------FSAMRDQ 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCc---CCcccCCchhhhEEEEEEECCEEEEEEEEECCCccc----------chHHHHH
Confidence 379999999999999999999873 2223333333221 1111 24677999999643 1222333
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH----hcCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~~ 218 (243)
++.. +|++++|+|+....+... ..+...+. ....|+++|+||+|+...
T Consensus 68 ~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~ 120 (164)
T smart00173 68 YMRT---GEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESE 120 (164)
T ss_pred HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 3333 899999999875422111 22222322 236899999999999753
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=118.88 Aligned_cols=110 Identities=14% Similarity=0.100 Sum_probs=70.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
++|+++|.+|||||||+++++... ....+++|+.+... ... ...+.+|||||... +..+...
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 68 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI---FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ----------FTAMRDL 68 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC---CCcccCCcchheEEEEEEECCEEEEEEEEECCCccc----------chhHHHH
Confidence 589999999999999999998652 23344444443211 111 33567999999643 2233334
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH----hcCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~~ 218 (243)
++.. +|++++|+|.+...+... ..++..+. ..+.|+++|+||+|+...
T Consensus 69 ~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 121 (164)
T cd04175 69 YMKN---GQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 121 (164)
T ss_pred HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhc
Confidence 4443 899999999765422221 23333332 235899999999999753
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.1e-15 Score=115.27 Aligned_cols=111 Identities=20% Similarity=0.213 Sum_probs=70.5
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|++|+|||||++++++.. ......+..+.+. ..... + ..+.+|||||... +......
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~~ 68 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGK--FSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQER----------FRSITSS 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH----------HHHHHHH
Confidence 379999999999999999999873 1222222222222 12222 2 3678999999521 2233344
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
++. .+|++++|+|++++.+... ..++..+.. .+.|+++|+||+|+...
T Consensus 69 ~~~---~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~ 120 (164)
T smart00175 69 YYR---GAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQ 120 (164)
T ss_pred HhC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccc
Confidence 443 3899999999876432222 224444333 36899999999998753
|
Rab GTPases are implicated in vesicle trafficking. |
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.1e-15 Score=141.00 Aligned_cols=132 Identities=21% Similarity=0.248 Sum_probs=95.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccc----ccccC------------CCCceEEEE---EEEeCCcEEEEeCCCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV----VRTSD------------KPGLTQTIN---FFKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~----~~vs~------------~~gtT~~~~---~~~~~~~~~liDTpG~~~~ 151 (243)
...+|+++|.+|+|||||+|+|+..... ..+.+ ..|+|.+.. +...+..+.+|||||+.+.
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 4569999999999999999999754211 11111 356676643 3334788999999998641
Q ss_pred ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHH
Q 026112 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES 231 (243)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~ 231 (243)
. .....++. .+|++++|+|+..+....+..++..+...++|+++|+||+|+.... .....+.+++.
T Consensus 89 ~----------~~~~~~l~---~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~-~~~~~~~i~~~ 154 (689)
T TIGR00484 89 T----------VEVERSLR---VLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGAN-FLRVVNQIKQR 154 (689)
T ss_pred h----------HHHHHHHH---HhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHHHHH
Confidence 1 11222222 2899999999998888888888888888899999999999998643 55666777777
Q ss_pred HhhCC
Q 026112 232 LKANN 236 (243)
Q Consensus 232 l~~~~ 236 (243)
+....
T Consensus 155 l~~~~ 159 (689)
T TIGR00484 155 LGANA 159 (689)
T ss_pred hCCCc
Confidence 66543
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.4e-15 Score=117.27 Aligned_cols=110 Identities=17% Similarity=0.173 Sum_probs=71.2
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCc----eEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL----TQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gt----T~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
+|+++|.+|||||||+|++.+... . ..++.+ +........+..+.+|||||.... ......++
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~ 68 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF-P--ENVPRVLPEITIPADVTPERVPTTIVDTSSRPQD----------RANLAAEI 68 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-C--ccCCCcccceEeeeeecCCeEEEEEEeCCCchhh----------hHHHhhhc
Confidence 799999999999999999998732 1 223322 222222223457889999996431 11122222
Q ss_pred hcccCccEEEEEEeCCCCCChhh--HHHHHHHHh--cCCcEEEEeecCCCCChH
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~p~i~v~nK~D~~~~~ 219 (243)
..+|++++|+|...+.+... ..++..+.. .+.|+++|+||+|+.+..
T Consensus 69 ---~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~ 119 (166)
T cd01893 69 ---RKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGS 119 (166)
T ss_pred ---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccc
Confidence 34899999999876533333 234555543 368999999999997654
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.4e-15 Score=126.42 Aligned_cols=127 Identities=20% Similarity=0.337 Sum_probs=85.3
Q ss_pred EEEEecCCCCchhHHHHHHhcccccc-cccC-CCC--------------ceEEE---EEEEeCCcEEEEeCCCCCCCccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVV-RTSD-KPG--------------LTQTI---NFFKLGTKLCLVDLPGYGFAYAK 154 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~-~vs~-~~g--------------tT~~~---~~~~~~~~~~liDTpG~~~~~~~ 154 (243)
+|+++|.+|+|||||+|+|+...... .... ..| .|... .+...+..+.+|||||+.+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~---- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYAD---- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHH----
Confidence 48999999999999999998642110 0000 011 12111 2223467899999999742
Q ss_pred hHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhh
Q 026112 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (243)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~ 234 (243)
+......++. .+|++++|+|+..+.......+++.+...++|+++|+||+|+... ......+.+++.++.
T Consensus 77 ------f~~~~~~~l~---~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~-~~~~~~~~l~~~~~~ 146 (268)
T cd04170 77 ------FVGETRAALR---AADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERA-DFDKTLAALQEAFGR 146 (268)
T ss_pred ------HHHHHHHHHH---HCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCC-CHHHHHHHHHHHhCC
Confidence 1111222222 389999999998877777677777888889999999999999865 445566677776654
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-15 Score=141.96 Aligned_cols=139 Identities=17% Similarity=0.159 Sum_probs=90.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccc----------cCCCC----------------------ceEEEEEEE---
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRT----------SDKPG----------------------LTQTINFFK--- 135 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~v----------s~~~g----------------------tT~~~~~~~--- 135 (243)
...+|+++|.+|+|||||+|+|+.... ... +...| +|.+..+..
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~-~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSK-MIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 456899999999999999999997632 211 11233 444443222
Q ss_pred eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCC-cEEEEeecCC
Q 026112 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTD 214 (243)
Q Consensus 136 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~-p~i~v~nK~D 214 (243)
.+..+.++||||+.+ +..........+|++++|+|+..++..++.+.+..+...+. ++++|+||+|
T Consensus 102 ~~~~~~liDtPG~~~-------------f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D 168 (632)
T PRK05506 102 PKRKFIVADTPGHEQ-------------YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMD 168 (632)
T ss_pred CCceEEEEECCChHH-------------HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecc
Confidence 256799999999632 22222223445999999999998887777777777777764 6889999999
Q ss_pred CCC--hHHHHHHHHHHHHHHhhCC---CccccCC
Q 026112 215 TVF--PIDVARRAMQIEESLKANN---SLVQPVV 243 (243)
Q Consensus 215 ~~~--~~~~~~~~~~l~~~l~~~~---~~~~pi~ 243 (243)
+.. ..........+.+.+...+ .++.|||
T Consensus 169 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiS 202 (632)
T PRK05506 169 LVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPIS 202 (632)
T ss_pred cccchhHHHHHHHHHHHHHHHHcCCCCccEEEEe
Confidence 985 2333444455554443333 2355654
|
|
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-15 Score=116.71 Aligned_cols=112 Identities=18% Similarity=0.172 Sum_probs=70.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceE---EEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~---~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.+|+++|++|+|||||+|++++........+..+.+. .+.+...+..+.+|||||... +......++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~ 71 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER----------YRSLAPMYY 71 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHH----------HHHHHHHHh
Confidence 5899999999999999999999842121333333322 222222245788999999521 122222333
Q ss_pred hcccCccEEEEEEeCCCCCCh-hhHHHHHHHHhc---CCcEEEEeecCCCCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKP-RDHELISLMERS---QTKYQVVLTKTDTVF 217 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~-~~~~~~~~l~~~---~~p~i~v~nK~D~~~ 217 (243)
+ .+|++++|+|++...+. ....++..+... ..|+++|+||+|+..
T Consensus 72 ~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 120 (163)
T cd01860 72 R---GAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLES 120 (163)
T ss_pred c---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 3 38999999998754211 123444444433 478999999999874
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.8e-15 Score=117.64 Aligned_cols=114 Identities=18% Similarity=0.147 Sum_probs=69.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEE---EEEEE----------eCCcEEEEeCCCCCCCccchHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFK----------LGTKLCLVDLPGYGFAYAKEEVK 158 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~---~~~~~----------~~~~~~liDTpG~~~~~~~~~~~ 158 (243)
..+|+++|.+|+|||||++++.+........+..+.... +.+.. ....+.+|||||..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--------- 74 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE--------- 74 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH---------
Confidence 368999999999999999999886321111111111111 11110 12468899999942
Q ss_pred HHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
.+..+...+++ .+|++++|+|.+...+..+ ..++..+.. .+.|+++|+||+|+...
T Consensus 75 -~~~~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~ 135 (180)
T cd04127 75 -RFRSLTTAFFR---DAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQ 135 (180)
T ss_pred -HHHHHHHHHhC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhc
Confidence 12334444444 3899999999876422222 234444433 25789999999999754
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-15 Score=114.76 Aligned_cols=118 Identities=25% Similarity=0.226 Sum_probs=71.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE--Ee-C--CcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~--~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
++|+++|.+|+|||||+|+|++.. ......+++|.+.... .. + ..+.+|||||..+. ...+......
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~------~~~~~~~~~~ 73 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK--FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDY------RAIRRLYYRA 73 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC--CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccc------hHHHHHHHhh
Confidence 589999999999999999999983 5566677777776542 22 3 56889999995431 1112222222
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~ 219 (243)
.......+|++++|.+...........+...+.. +.|+++|+||+|+....
T Consensus 74 ~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~ 124 (161)
T TIGR00231 74 VESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAK 124 (161)
T ss_pred hhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcch
Confidence 2222222344444444332221222222332222 78999999999998654
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-15 Score=117.04 Aligned_cols=103 Identities=22% Similarity=0.295 Sum_probs=65.3
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (243)
+|+++|.+|+|||||+|+|.+... .. ..|..+.+.. . .+|||||+.... .. .+..+. ....
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~---~~---~~~~~v~~~~--~--~~iDtpG~~~~~--~~---~~~~~~----~~~~ 63 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT---LA---RKTQAVEFND--K--GDIDTPGEYFSH--PR---WYHALI----TTLQ 63 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc---cC---ccceEEEECC--C--CcccCCccccCC--HH---HHHHHH----HHHh
Confidence 799999999999999999998731 11 2333333321 1 279999974321 11 111222 1233
Q ss_pred CccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 174 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 174 ~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
.+|++++|+|++.+.+.....+.+. ..+.|+++++||+|+..
T Consensus 64 ~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~ 105 (158)
T PRK15467 64 DVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPD 105 (158)
T ss_pred cCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCc
Confidence 4999999999886543333333322 23579999999999864
|
|
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.7e-15 Score=117.19 Aligned_cols=111 Identities=17% Similarity=0.166 Sum_probs=68.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (243)
.+|+++|.+|+|||||++++..... ....+..|.... ........+.+|||||... +..+...++..
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~-~~~~pt~g~~~~-~~~~~~~~~~l~D~~G~~~----------~~~~~~~~~~~- 67 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEYKNISFTVWDVGGQDK----------IRPLWRHYFQN- 67 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-cccCCCCCcceE-EEEECCEEEEEEECCCCHh----------HHHHHHHHhcC-
Confidence 3799999999999999999975522 211111121111 1112356789999999632 12233344443
Q ss_pred cCccEEEEEEeCCCCC--ChhhHHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 173 VSLKRVCLLIDTKWGV--KPRDHELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~--~~~~~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
+|++++|+|++... ......+.+.+.. ...|+++|+||+|+...
T Consensus 68 --ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 116 (159)
T cd04150 68 --TQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA 116 (159)
T ss_pred --CCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC
Confidence 89999999987532 1122223333322 24899999999999643
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=7e-15 Score=115.33 Aligned_cols=111 Identities=16% Similarity=0.175 Sum_probs=70.3
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceE-EE--EEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~-~~--~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.+|+++|.+|+|||||++++.+.. ....++.|+. +. ..... ...+.+|||||... +.....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~ 69 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKK---FMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER----------FRAVTR 69 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC---CCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHH
Confidence 589999999999999999999873 2233333321 11 11122 24678999999521 223334
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCChH
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~~ 219 (243)
.+++ .+|++++|+|.+.+.+... ..++..+.. .+.|+++|.||+|+....
T Consensus 70 ~~~~---~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~ 123 (166)
T cd04122 70 SYYR---GAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQR 123 (166)
T ss_pred HHhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 4443 3899999999886422222 233333322 257899999999997543
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.8e-15 Score=116.70 Aligned_cols=111 Identities=18% Similarity=0.283 Sum_probs=72.8
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (243)
.|+++|.+|||||||++++.+. ......+..|.+.. .+...+..+.++||||... +..+...|+..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~-~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~~-- 66 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPT-KLRLDKYEVCIFDLGGGAN----------FRGIWVNYYAE-- 66 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEE-EEEECCEEEEEEECCCcHH----------HHHHHHHHHcC--
Confidence 4789999999999999999986 32334444444432 2222366799999999532 12233344433
Q ss_pred CccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCChH
Q 026112 174 SLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 174 ~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~~ 219 (243)
+|++++|+|++....... ..++..+.. .+.|+++|+||+|+....
T Consensus 67 -a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 116 (167)
T cd04161 67 -AHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL 116 (167)
T ss_pred -CCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence 899999999876422221 233333322 368999999999997654
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.1e-15 Score=116.44 Aligned_cols=112 Identities=21% Similarity=0.205 Sum_probs=71.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.+|+++|++|+|||||+|+|++........+..+.+........ ...+.+|||||... +......++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~~ 70 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQER----------FRTLTSSYY 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchh----------hhhhhHHHh
Confidence 37999999999999999999987322223444444433332222 24688999999532 122222333
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~ 217 (243)
+.+|++++|+|.+...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 71 ---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~ 120 (161)
T cd01863 71 ---RGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN 120 (161)
T ss_pred ---CCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc
Confidence 34899999999875422222 223333332 3688999999999973
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.7e-15 Score=132.06 Aligned_cols=134 Identities=20% Similarity=0.345 Sum_probs=88.6
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccc-----------------------------cccCCCCceEEEEEEEe---C
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV-----------------------------RTSDKPGLTQTINFFKL---G 137 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~-----------------------------~vs~~~gtT~~~~~~~~---~ 137 (243)
....+|+++|..++|||||+++|+...... ......|+|.+...... +
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 345789999999999999999998532100 00124478888755442 5
Q ss_pred CcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC---CChhhHHHHHHHHhcC-CcEEEEeecC
Q 026112 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG---VKPRDHELISLMERSQ-TKYQVVLTKT 213 (243)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~---~~~~~~~~~~~l~~~~-~p~i~v~nK~ 213 (243)
..+.+|||||+. .+...+......+|++++|+|++.+ ......+.+..+...+ .|+++|+||+
T Consensus 85 ~~i~iiDtpGh~-------------~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~ 151 (426)
T TIGR00483 85 YEVTIVDCPGHR-------------DFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKM 151 (426)
T ss_pred eEEEEEECCCHH-------------HHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEECh
Confidence 689999999963 1333333334559999999999876 3333444444455555 4689999999
Q ss_pred CCCC--hHHHHHHHHHHHHHHhhCC
Q 026112 214 DTVF--PIDVARRAMQIEESLKANN 236 (243)
Q Consensus 214 D~~~--~~~~~~~~~~l~~~l~~~~ 236 (243)
|+.. ..........+++.+...+
T Consensus 152 Dl~~~~~~~~~~~~~ei~~~~~~~g 176 (426)
T TIGR00483 152 DSVNYDEEEFEAIKKEVSNLIKKVG 176 (426)
T ss_pred hccCccHHHHHHHHHHHHHHHHHcC
Confidence 9974 3344455566666665544
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.1e-15 Score=116.55 Aligned_cols=113 Identities=16% Similarity=0.141 Sum_probs=70.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.+|+++|.+|+|||||+++|++........+..+.......... ...+.+|||||... +......++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~~~~~ 70 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQER----------FRSVTRSYY 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHH----------HHHhHHHHh
Confidence 37999999999999999999987321212222222122111222 24678999999632 222333333
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHH---hcCCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~p~i~v~nK~D~~~~ 218 (243)
. .+|++++|+|.+...+... ..++..+. ..+.|+++|+||+|+...
T Consensus 71 ~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 120 (161)
T cd04113 71 R---GAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQ 120 (161)
T ss_pred c---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchh
Confidence 3 3899999999886433222 23333333 236899999999999753
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.2e-15 Score=119.94 Aligned_cols=110 Identities=13% Similarity=0.124 Sum_probs=68.5
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEe----CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
++|+++|.+|+|||||++++++... . ....+....+. ..... ...+.+|||||... +..+..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~-~-~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~----------~~~~~~ 68 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIF-S-QHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQER----------FGGMTR 68 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-C-CCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchh----------hhhhHH
Confidence 4799999999999999999998631 1 11112112222 12222 23578999999632 233344
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH-------hcCCcEEEEeecCCCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-------RSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~-------~~~~p~i~v~nK~D~~~ 217 (243)
.++.. +|++++|+|.+...+... ..++..+. ...+|+++|+||+|+..
T Consensus 69 ~~~~~---a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~ 124 (201)
T cd04107 69 VYYRG---AVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKK 124 (201)
T ss_pred HHhCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccc
Confidence 44443 899999999876422222 12333332 13579999999999974
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.6e-15 Score=141.38 Aligned_cols=131 Identities=21% Similarity=0.255 Sum_probs=95.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccc----ccccc------------CCCCceEEEE---EEEeCCcEEEEeCCCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWG----VVRTS------------DKPGLTQTIN---FFKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~----~~~vs------------~~~gtT~~~~---~~~~~~~~~liDTpG~~~~ 151 (243)
...+|+++|++|+|||||+|+|+.... ...+. ...|+|.+.. +...+..+.++||||+.+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~- 85 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD- 85 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH-
Confidence 456899999999999999999975321 11122 2456676653 333477899999999742
Q ss_pred ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHH
Q 026112 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES 231 (243)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~ 231 (243)
+..........+|++++|+|+..++...+..++..+...++|+++++||+|+.... .....+.+++.
T Consensus 86 ------------f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~-~~~~~~~i~~~ 152 (691)
T PRK12739 86 ------------FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGAD-FFRSVEQIKDR 152 (691)
T ss_pred ------------HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHHHHH
Confidence 11112222233899999999999988888899999988899999999999998643 55667777777
Q ss_pred HhhC
Q 026112 232 LKAN 235 (243)
Q Consensus 232 l~~~ 235 (243)
+...
T Consensus 153 l~~~ 156 (691)
T PRK12739 153 LGAN 156 (691)
T ss_pred hCCC
Confidence 7653
|
|
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.3e-15 Score=116.16 Aligned_cols=111 Identities=15% Similarity=0.225 Sum_probs=69.2
Q ss_pred EEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccC
Q 026112 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVS 174 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (243)
|+++|.+|+|||||++++.+........+..|... ......+..+.+|||||... . ..+...++..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~-~~i~~~~~~l~i~Dt~G~~~------~----~~~~~~~~~~--- 67 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS-VAIPTQDAIMELLEIGGSQN------L----RKYWKRYLSG--- 67 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce-EEEeeCCeEEEEEECCCCcc------h----hHHHHHHHhh---
Confidence 78999999999999999998732121222222211 22223356789999999643 1 1222333333
Q ss_pred ccEEEEEEeCCCCCChhh-HHHHHHH-Hh-cCCcEEEEeecCCCCChH
Q 026112 175 LKRVCLLIDTKWGVKPRD-HELISLM-ER-SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 175 ~d~v~~vvd~~~~~~~~~-~~~~~~l-~~-~~~p~i~v~nK~D~~~~~ 219 (243)
+|++++|+|++....... ..++..+ .. .++|+++|.||+|+....
T Consensus 68 ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~ 115 (164)
T cd04162 68 SQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAAR 115 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCC
Confidence 899999999876422111 2222323 22 478999999999987654
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.5e-15 Score=119.21 Aligned_cols=111 Identities=18% Similarity=0.170 Sum_probs=68.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE----eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.+|+++|.+|+|||||+++++.... ....+..|.+....... .+..+.+|||||... +..+...+
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~~~~ 72 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEF-VNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEK----------LRPLWKSY 72 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCc-CCcCCccccceeEEEeeccCCCceEEEEEECCCcHh----------HHHHHHHH
Confidence 5899999999999999999988632 21112122222221111 235789999999532 12223333
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHH----HHHHhcCCcEEEEeecCCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELI----SLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~----~~l~~~~~p~i~v~nK~D~~~ 217 (243)
+. .+|++++|+|++...+... ..++ ......+.|+++|+||+|+..
T Consensus 73 ~~---~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 73 TR---CTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred hc---cCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 33 3999999999876421111 1122 222334689999999999864
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.4e-15 Score=132.18 Aligned_cols=140 Identities=23% Similarity=0.323 Sum_probs=90.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc-ccccccCCCCceEEEEEEE-----------------------------eCCcE
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFK-----------------------------LGTKL 140 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~-~~~~vs~~~gtT~~~~~~~-----------------------------~~~~~ 140 (243)
...+|+++|.+++|||||+++|++.. +........|.|.++.+.. .+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 35689999999999999999998641 0000111223343332110 13568
Q ss_pred EEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCC-ChhhHHHHHHHHhcCC-cEEEEeecCCCCCh
Q 026112 141 CLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFP 218 (243)
Q Consensus 141 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-~~~~~~~~~~l~~~~~-p~i~v~nK~D~~~~ 218 (243)
.++||||+. .+...+......+|++++|+|++++. ..+..+.+..+...+. |+++|+||+|+...
T Consensus 83 ~liDtPGh~-------------~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~ 149 (406)
T TIGR03680 83 SFVDAPGHE-------------TLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSK 149 (406)
T ss_pred EEEECCCHH-------------HHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCH
Confidence 999999962 22333333344589999999999875 5566666777776665 68999999999876
Q ss_pred HHHHHHHHHHHHHHhhC---CCccccCC
Q 026112 219 IDVARRAMQIEESLKAN---NSLVQPVV 243 (243)
Q Consensus 219 ~~~~~~~~~l~~~l~~~---~~~~~pi~ 243 (243)
.......+.+.+.+... +.+++|+|
T Consensus 150 ~~~~~~~~~i~~~l~~~~~~~~~ii~vS 177 (406)
T TIGR03680 150 EKALENYEEIKEFVKGTVAENAPIIPVS 177 (406)
T ss_pred HHHHHHHHHHHhhhhhcccCCCeEEEEE
Confidence 65555555666555432 34555653
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.3e-15 Score=132.75 Aligned_cols=140 Identities=17% Similarity=0.158 Sum_probs=90.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccccc-------------cc------------------CCCCceEEEEEEE---e
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR-------------TS------------------DKPGLTQTINFFK---L 136 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~-------------vs------------------~~~gtT~~~~~~~---~ 136 (243)
..++|+++|.+++|||||+++|+...+... .+ ...|.|.++.+.. .
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~ 105 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE 105 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC
Confidence 558999999999999999999986532110 00 0124555654332 3
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCC-cEEEEeecCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDT 215 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~-p~i~v~nK~D~ 215 (243)
+..+.++||||+.. +..........+|++++|+|+..++...+.+.+..+...+. |+++|+||+|+
T Consensus 106 ~~~i~~iDTPGh~~-------------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~ 172 (474)
T PRK05124 106 KRKFIIADTPGHEQ-------------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDL 172 (474)
T ss_pred CcEEEEEECCCcHH-------------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeecc
Confidence 56899999999631 22222222345999999999998877766666666666664 68999999999
Q ss_pred CChH--HHHHHHHHHHHHHhhC----CCccccCC
Q 026112 216 VFPI--DVARRAMQIEESLKAN----NSLVQPVV 243 (243)
Q Consensus 216 ~~~~--~~~~~~~~l~~~l~~~----~~~~~pi~ 243 (243)
.... .+....+.+...+... ...+.|||
T Consensus 173 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvS 206 (474)
T PRK05124 173 VDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLS 206 (474)
T ss_pred ccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEE
Confidence 8432 2344445555444332 24455654
|
|
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.9e-15 Score=115.19 Aligned_cols=110 Identities=15% Similarity=0.129 Sum_probs=66.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|++|+|||||+|++++.. .. ....+..+.+. ..... ...+.+|||||... +..+...
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~-~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~ 68 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKK-FS-NQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQER----------FQSLGVA 68 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CC-cCcCCccceEEEEEEEEECCEEEEEEEEeCCChHH----------HHhHHHH
Confidence 379999999999999999999873 11 11111112222 11112 23467999999532 1223333
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHH-Hh------cCCcEEEEeecCCCCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM-ER------SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l-~~------~~~p~i~v~nK~D~~~ 217 (243)
+++ .+|++++++|+..+.+... ..+.+.+ .. .++|+++|+||+|+..
T Consensus 69 ~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 69 FYR---GADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred Hhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 333 3899999999876422111 1222222 21 2689999999999984
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.4e-15 Score=115.58 Aligned_cols=109 Identities=14% Similarity=0.075 Sum_probs=69.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
++|+++|++|+|||||+++++... .+..+.+++.+... .. ....+.+|||||... +......
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~ 67 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQED----------YAAIRDN 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC---CccccCCcchhhEEEEEEECCEEEEEEEEECCChhh----------hhHHHHH
Confidence 379999999999999999999863 23344444433211 11 134688999999643 1223333
Q ss_pred HHhcccCccEEEEEEeCCCCCChh-hHHHHH-HHH---hcCCcEEEEeecCCCCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELIS-LME---RSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~-~l~---~~~~p~i~v~nK~D~~~ 217 (243)
+++. ++++++|+|...+-+.. ...+.. +.. ..+.|+++|+||+|+..
T Consensus 68 ~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 68 YHRS---GEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred Hhhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 3333 79999999976532111 112222 222 24799999999999976
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.7e-15 Score=114.72 Aligned_cols=113 Identities=14% Similarity=0.049 Sum_probs=69.2
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccC-CCCceEEEEEE-EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFF-KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~-~~gtT~~~~~~-~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
.+|+++|.+|+|||||++++++........+ ...+.+..... .....+.+|||||.... ..+...++.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~~~~ 71 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQF----------PAMQRLSIS 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcc----------hHHHHHHhh
Confidence 5899999999999999999998731111111 11111111111 12346889999997431 122222332
Q ss_pred cccCccEEEEEEeCCCCCChhh-HHHHHHHHh------cCCcEEEEeecCCCCCh
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~------~~~p~i~v~nK~D~~~~ 218 (243)
.+|++++|+|.+...+... ..+++.+.. .+.|+++|+||+|+...
T Consensus 72 ---~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~ 123 (165)
T cd04140 72 ---KGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK 123 (165)
T ss_pred ---cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc
Confidence 3899999999876533322 334444433 35899999999999753
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-14 Score=117.74 Aligned_cols=118 Identities=16% Similarity=0.098 Sum_probs=70.1
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEE-eC--CcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK-LG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~-~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
+|+++|.+|||||||++++++... .. ...|.++.++. ... .+ ..+.+|||||....... ....|......
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f-~~-~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~--~~~e~~~~~~~- 76 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF-PE-EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGT--AGQEWMDPRFR- 76 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC-Cc-ccCCccccccceeEEEECCEEEEEEEEeCCCcccCCcc--chhHHHHHHHh-
Confidence 799999999999999999998732 21 12232222321 111 23 45779999997542111 11112111111
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHH------hcCCcEEEEeecCCCCCh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLME------RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~------~~~~p~i~v~nK~D~~~~ 218 (243)
....+|++++|+|++.+.+... ..+.+.+. ..++|+++|+||+|+...
T Consensus 77 --~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~ 131 (198)
T cd04142 77 --GLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH 131 (198)
T ss_pred --hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc
Confidence 2245999999999876432222 23333332 235899999999999653
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-14 Score=117.85 Aligned_cols=125 Identities=18% Similarity=0.271 Sum_probs=86.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
....|+++|.+|+|||||+|.|++......++...|+. .+ ....+..+.++||||.. . .+..
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i-~i-~~~~~~~i~~vDtPg~~--------~----~~l~---- 99 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI-TV-VTGKKRRLTFIECPNDI--------N----AMID---- 99 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE-EE-EecCCceEEEEeCCchH--------H----HHHH----
Confidence 45679999999999999999999863323344445532 11 11246789999999842 1 1111
Q ss_pred cccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEE-EEeecCCCCChH-HHHHHHHHHHHHHh
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTVFPI-DVARRAMQIEESLK 233 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i-~v~nK~D~~~~~-~~~~~~~~l~~~l~ 233 (243)
....+|++++|+|+..++...+..++..+...+.|.+ +|+||+|+..+. ........+++.+.
T Consensus 100 ~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~ 164 (225)
T cd01882 100 IAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFW 164 (225)
T ss_pred HHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHH
Confidence 1233899999999998888888888888888888854 599999998543 34445556655443
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.7e-15 Score=124.02 Aligned_cols=147 Identities=23% Similarity=0.368 Sum_probs=93.9
Q ss_pred CEEEEecCCCCchhHHHHHHhccccccccc-CCC------CceEEEEEE----E---eCCcEEEEeCCCCCCCccchHH-
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKP------GLTQTINFF----K---LGTKLCLVDLPGYGFAYAKEEV- 157 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs-~~~------gtT~~~~~~----~---~~~~~~liDTpG~~~~~~~~~~- 157 (243)
++|+++|.+|+|||||+|.|++.. ..... ..+ ..|..+... . ....+.++|||||++.......
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSD-IISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS----------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcc-cccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 689999999999999999999973 22221 111 011112111 1 1346889999999976433221
Q ss_pred ---HHHHHHHHHHHHhcc----------cCccEEEEEEeCC-CCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHH
Q 026112 158 ---KDAWEELVKEYVSTR----------VSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR 223 (243)
Q Consensus 158 ---~~~~~~~~~~~~~~~----------~~~d~v~~vvd~~-~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~ 223 (243)
...+..-...|+... ...|+++|+++++ +++.+.|.+.++.|... +++|-|+.|+|.+.+.++..
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~-vNvIPvIaKaD~lt~~el~~ 162 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR-VNVIPVIAKADTLTPEELQA 162 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT-SEEEEEESTGGGS-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc-ccEEeEEecccccCHHHHHH
Confidence 122222222333211 1368899999964 57889999988888774 89999999999999999999
Q ss_pred HHHHHHHHHhhCCCcccc
Q 026112 224 RAMQIEESLKANNSLVQP 241 (243)
Q Consensus 224 ~~~~l~~~l~~~~~~~~p 241 (243)
....+++.++.++..+|.
T Consensus 163 ~k~~i~~~l~~~~I~~f~ 180 (281)
T PF00735_consen 163 FKQRIREDLEENNIKIFD 180 (281)
T ss_dssp HHHHHHHHHHHTT--S--
T ss_pred HHHHHHHHHHHcCceeec
Confidence 999999999999887774
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.6e-15 Score=117.99 Aligned_cols=111 Identities=14% Similarity=0.156 Sum_probs=70.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEE---EEEEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~---~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.+|+++|.+|+|||||++++++.. ...+.+.+|+.. ...... + ..+.+|||||... +..+..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~ 68 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHR--FLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSER----------YEAMSR 68 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--cCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchh----------hhhhhH
Confidence 379999999999999999999873 222334433322 122222 2 3466999999632 122222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc--CCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~--~~p~i~v~nK~D~~~~ 218 (243)
.++. .+|++++|+|.+...+... ..+++.+... +.|+++|+||+|+...
T Consensus 69 ~~~~---~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 120 (193)
T cd04118 69 IYYR---GAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQ 120 (193)
T ss_pred hhcC---CCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccccc
Confidence 3332 3899999999876422221 3455555443 6899999999998653
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=120.77 Aligned_cols=86 Identities=23% Similarity=0.222 Sum_probs=61.7
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
+|+++|.+|+|||||+|+|++.. ..++.++++|.++... ..+..+.++||||+.+..... ..+....+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~--~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~------~~~~~~~l~ 73 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK--SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADG------KGRGRQVIA 73 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--ccccCCCCccccceEEEEEECCeEEEEEECCCcccccccc------hhHHHHHHH
Confidence 68999999999999999999984 5578889999776543 246789999999975422111 012222233
Q ss_pred cccCccEEEEEEeCCCC
Q 026112 171 TRVSLKRVCLLIDTKWG 187 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~ 187 (243)
..+.+|++++|+|++..
T Consensus 74 ~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 74 VARTADLILMVLDATKP 90 (233)
T ss_pred hhccCCEEEEEecCCcc
Confidence 34559999999997643
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.3e-15 Score=112.84 Aligned_cols=110 Identities=19% Similarity=0.224 Sum_probs=68.0
Q ss_pred EEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE-EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhccc
Q 026112 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF-KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~-~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (243)
|+++|++|||||||+|+|.+... .....+.+..+.... ..+..+.++||||... +......++..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~~~~~-- 67 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF--SEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPR----------FRSMWERYCRG-- 67 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC--CcCccCCCCcceEEEEECCEEEEEEECCCCHh----------HHHHHHHHHhc--
Confidence 78999999999999999999742 122222222222111 2245689999999632 12233334333
Q ss_pred CccEEEEEEeCCCCCChh-h-HHHHHHHH---hcCCcEEEEeecCCCCChH
Q 026112 174 SLKRVCLLIDTKWGVKPR-D-HELISLME---RSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 174 ~~d~v~~vvd~~~~~~~~-~-~~~~~~l~---~~~~p~i~v~nK~D~~~~~ 219 (243)
+|++++|+|++...... . ..+...+. ..+.|+++|+||+|+....
T Consensus 68 -~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 117 (159)
T cd04159 68 -VNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL 117 (159)
T ss_pred -CCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc
Confidence 89999999987531111 1 12222222 1368999999999987653
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-14 Score=113.85 Aligned_cols=116 Identities=21% Similarity=0.180 Sum_probs=70.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
..+|+++|++|+|||||++++++........+..+.......... ...+.+|||||... . ...+...+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------~---~~~~~~~~ 72 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER------F---RKSMVQHY 72 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHH------H---HHhhHHHh
Confidence 368999999999999999999886311111111111111111111 24688999999532 1 01223333
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCChH
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~~ 219 (243)
+. .+|++++|+|.+.+.+... ..+++.+.. ...|+++|+||+|+....
T Consensus 73 ~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 125 (170)
T cd04115 73 YR---NVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQI 125 (170)
T ss_pred hc---CCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhc
Confidence 33 3899999999876533322 244444433 258999999999987543
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.1e-15 Score=118.02 Aligned_cols=114 Identities=12% Similarity=0.044 Sum_probs=69.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.++|+++|.+|+|||||++++.+........+..+.+... .+......+.+|||||..+ +..+...|+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~l~~~~~ 74 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEE----------YSAMRDQYM 74 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCcc----------chhhHHHHh
Confidence 4799999999999999999999863211111211211111 1111133577899999643 222333444
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
.. +|++++|+|+++..+... ..+...+.. .+.|+++|.||+|+...
T Consensus 75 ~~---~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~ 125 (189)
T PTZ00369 75 RT---GQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSE 125 (189)
T ss_pred hc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 43 899999999876432121 233333322 26799999999998643
|
|
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.5e-15 Score=115.69 Aligned_cols=115 Identities=20% Similarity=0.262 Sum_probs=73.7
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.+.++|+++|++|||||||+++|.+. ......+..|.+.... ...+..+.++||||... +......++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~-~~~~~~~t~g~~~~~i-~~~~~~~~~~D~~G~~~----------~~~~~~~~~ 79 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASE-DISHITPTQGFNIKTV-QSDGFKLNVWDIGGQRA----------IRPYWRNYF 79 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcC-CCcccCCCCCcceEEE-EECCEEEEEEECCCCHH----------HHHHHHHHh
Confidence 34689999999999999999999997 3333344444333221 12367789999999632 122233333
Q ss_pred hcccCccEEEEEEeCCCCCCh--hhHHHHHHH---HhcCCcEEEEeecCCCCChH
Q 026112 170 STRVSLKRVCLLIDTKWGVKP--RDHELISLM---ERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~--~~~~~~~~l---~~~~~p~i~v~nK~D~~~~~ 219 (243)
..+|++++|+|+...... ....+...+ ...++|+++++||+|+....
T Consensus 80 ---~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 131 (173)
T cd04155 80 ---ENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA 131 (173)
T ss_pred ---cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC
Confidence 338999999998753111 112222222 23468999999999997643
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-14 Score=129.42 Aligned_cols=137 Identities=15% Similarity=0.139 Sum_probs=89.4
Q ss_pred EEEEecCCCCchhHHHHHHhccccccc-------------c------------------cCCCCceEEEEEEE---eCCc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVR-------------T------------------SDKPGLTQTINFFK---LGTK 139 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~-------------v------------------s~~~gtT~~~~~~~---~~~~ 139 (243)
+|+++|+.++|||||+++|+...+... . ....|.|.+..+.. .+..
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 789999999999999999985431100 0 01234566654433 2568
Q ss_pred EEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCCh
Q 026112 140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFP 218 (243)
Q Consensus 140 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~ 218 (243)
+.++||||+.+ +..........+|++++|+|+..++..++.+.+..+...++| +++|+||+|+...
T Consensus 82 ~~liDtPGh~~-------------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~ 148 (406)
T TIGR02034 82 FIVADTPGHEQ-------------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDY 148 (406)
T ss_pred EEEEeCCCHHH-------------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccc
Confidence 99999999632 222222334459999999999988888887777777777664 8899999999853
Q ss_pred H--HHHHHHHHHHHHHhhCC---CccccCC
Q 026112 219 I--DVARRAMQIEESLKANN---SLVQPVV 243 (243)
Q Consensus 219 ~--~~~~~~~~l~~~l~~~~---~~~~pi~ 243 (243)
. .+....+.+.+.+...+ .++.|||
T Consensus 149 ~~~~~~~i~~~~~~~~~~~~~~~~~iipiS 178 (406)
T TIGR02034 149 DEEVFENIKKDYLAFAEQLGFRDVTFIPLS 178 (406)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCccEEEee
Confidence 2 22333344444333322 2355654
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=126.75 Aligned_cols=85 Identities=24% Similarity=0.319 Sum_probs=66.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE--e-C-----------------CcEEEEeCCCCCCCc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--L-G-----------------TKLCLVDLPGYGFAY 152 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~--~-~-----------------~~~~liDTpG~~~~~ 152 (243)
++|+++|.||+|||||+|+|++. . +.++++|+||+++.... . + ..+.++||||+....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~-~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKA-G-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC-C-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 68999999999999999999998 4 78999999998876432 1 1 248999999987543
Q ss_pred cchHHHHHHHHHHHHHHhcccCccEEEEEEeCC
Q 026112 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (243)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~ 185 (243)
... ..+..+++...+.+|++++|+|+.
T Consensus 81 ~~g------~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKG------EGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ChH------HHHHHHHHHHHHhCCEEEEEEeCC
Confidence 221 234556666677799999999974
|
|
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7e-15 Score=117.49 Aligned_cols=111 Identities=18% Similarity=0.180 Sum_probs=69.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
..+|+++|.+|+|||||++++..... ....+..|.... .....+..+.+|||||... +..+...++..
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~-~~~~~T~~~~~~-~~~~~~~~~~l~D~~G~~~----------~~~~~~~~~~~ 84 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEV-VTTIPTIGFNVE-TVEYKNLKFTMWDVGGQDK----------LRPLWRHYYQN 84 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc-cccCCccccceE-EEEECCEEEEEEECCCCHh----------HHHHHHHHhcC
Confidence 46999999999999999999976522 222222222211 1112356799999999632 12233344443
Q ss_pred ccCccEEEEEEeCCCC--CChhhHHHHHHHHh---cCCcEEEEeecCCCCC
Q 026112 172 RVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~---~~~p~i~v~nK~D~~~ 217 (243)
+|++++|+|++.. +......+.+.+.. ...|+++|+||+|+..
T Consensus 85 ---ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 85 ---TNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred ---CCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 9999999998753 12222233333332 2579999999999865
|
|
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-14 Score=113.72 Aligned_cols=109 Identities=16% Similarity=0.190 Sum_probs=68.6
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCce-EEEE--EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT-~~~~--~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
+|+++|.+|+|||||++++++... ...+..|. .+.. .... ...+.+|||||... +..+...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f---~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 68 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF---DKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQER----------FKCIAST 68 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHH----------HHhhHHH
Confidence 689999999999999999998732 22222222 2221 1111 34689999999532 2333334
Q ss_pred HHhcccCccEEEEEEeCCCCCChh-hHHHHHHHHhc----CCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS----QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~~----~~p~i~v~nK~D~~~~ 218 (243)
+++ .+|++++|+|++...+.. ...++..+... ..|+++|.||+|+...
T Consensus 69 ~~~---~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~ 121 (170)
T cd04108 69 YYR---GAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121 (170)
T ss_pred Hhc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcc
Confidence 443 399999999987531111 23445444322 2569999999998654
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.61 E-value=7e-15 Score=114.76 Aligned_cols=109 Identities=13% Similarity=0.098 Sum_probs=68.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
++|+++|.+|+|||||+++++.... ...+.+|..+.. .... ...+.+|||||... +..+...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 68 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTF---IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ----------FASMRDL 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC---CCCCCCchhheEEEEEEECCEEEEEEEEECCCccc----------ccchHHH
Confidence 5899999999999999999987631 122223322221 1111 23577899999633 1122333
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~ 217 (243)
++.. +|++++|+|.++..+-.+ ..++..+.. .+.|+++|+||+|+..
T Consensus 69 ~~~~---ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~ 120 (163)
T cd04176 69 YIKN---GQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES 120 (163)
T ss_pred HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 3333 899999999876422121 234444432 3689999999999864
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-14 Score=112.15 Aligned_cols=112 Identities=16% Similarity=0.141 Sum_probs=71.3
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCce-EEE--EEEE----eCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI--NFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT-~~~--~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
+|+++|.+|||||||+++|.... ......+..++ .++ .... ....+.+|||||.. .+..+..
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 70 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNG-AVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE----------LYSDMVS 70 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH----------HHHHHHH
Confidence 79999999999999999998651 12233333333 222 1111 12468899999942 1233444
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc--CCcEEEEeecCCCCChH
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~--~~p~i~v~nK~D~~~~~ 219 (243)
.++. .+|++++|+|.+...+... ..+++.+... +.|+++|+||+|+....
T Consensus 71 ~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 123 (164)
T cd04101 71 NYWE---SPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKA 123 (164)
T ss_pred HHhC---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc
Confidence 4443 4899999999876422221 3444544433 58999999999997543
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.60 E-value=5e-14 Score=116.70 Aligned_cols=125 Identities=21% Similarity=0.258 Sum_probs=88.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--------------------------------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-------------------------------------- 132 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~-------------------------------------- 132 (243)
..|.|+++|++|+||||++++|++.. ....+. ..+|+.+.
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~-~~~~~~-g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 102 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRD-FLPRGS-GIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDR 102 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCC-ccccCC-CcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 56899999999999999999999862 111110 00111100
Q ss_pred -------------EE----EeCCcEEEEeCCCCCCC---ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh
Q 026112 133 -------------FF----KLGTKLCLVDLPGYGFA---YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 192 (243)
Q Consensus 133 -------------~~----~~~~~~~liDTpG~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~ 192 (243)
.. +....+.++||||+... .........+..++..|+... .+++++|+|+..++...+
T Consensus 103 ~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~--~~IIL~Vvda~~d~~~~d 180 (240)
T smart00053 103 VTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKE--ECLILAVTPANVDLANSD 180 (240)
T ss_pred hcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCc--cCeEEEEEECCCCCCchh
Confidence 00 01257999999999643 112445566777788887642 568999999987777666
Q ss_pred -HHHHHHHHhcCCcEEEEeecCCCCChH
Q 026112 193 -HELISLMERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 193 -~~~~~~l~~~~~p~i~v~nK~D~~~~~ 219 (243)
.++.+.+...+.|+++|+||+|...+.
T Consensus 181 ~l~ia~~ld~~~~rti~ViTK~D~~~~~ 208 (240)
T smart00053 181 ALKLAKEVDPQGERTIGVITKLDLMDEG 208 (240)
T ss_pred HHHHHHHHHHcCCcEEEEEECCCCCCcc
Confidence 588889988999999999999998754
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=3e-14 Score=115.39 Aligned_cols=115 Identities=21% Similarity=0.204 Sum_probs=70.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|++|+|||||++.+.+........+..+.......... + ..+.+|||||... +..+...
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~~~ 74 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER----------FRTITST 74 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchh----------HHHHHHH
Confidence 3579999999999999999999987311111122221111111111 2 3678999999532 2233344
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc--CCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~--~~p~i~v~nK~D~~~~ 218 (243)
++.. ++++++|+|+++..+... ..+++.+... ..|+++|+||+|+...
T Consensus 75 ~~~~---a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~ 125 (199)
T cd04110 75 YYRG---THGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPER 125 (199)
T ss_pred HhCC---CcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc
Confidence 4433 899999999876422222 2344444332 4799999999999754
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-14 Score=112.03 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=68.5
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||+|++++.. ... ...+.++.+... ... ...+.+|||||... +......
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~ 68 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENK-FNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQER----------YHALGPI 68 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCC-CcCCccceeEEEEEEEECCEEEEEEEEECCchHH----------HHHhhHH
Confidence 379999999999999999999873 221 122222222211 111 23588999999421 2223333
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~~ 218 (243)
++. .+|++++|+|.+++..... ..+++.+... +.|+++|+||+|+...
T Consensus 69 ~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~ 120 (162)
T cd04123 69 YYR---DADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120 (162)
T ss_pred Hhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 333 3899999999876422222 2333333322 5899999999999854
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=116.65 Aligned_cols=108 Identities=15% Similarity=0.178 Sum_probs=68.3
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE---EEEEeC--CcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~---~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
+|+++|.+|+|||||+++|+... ....+++|+.+. .....+ ..+.+|||||... +..+...+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~ 67 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH---FVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEE----------YTALRDQW 67 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC---CCccCCCchHhhEEEEEEECCEEEEEEEEECCCchh----------hHHHHHHH
Confidence 48999999999999999998762 122333333221 111112 3478999999532 22233334
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh------cCCcEEEEeecCCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~------~~~p~i~v~nK~D~~~ 217 (243)
+.. +|++++|+|.+...+... ..+++.+.. .+.|+++|+||+|+..
T Consensus 68 ~~~---ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 68 IRE---GEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred HHh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 443 899999999876432222 234444432 3579999999999964
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=114.82 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=70.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEE-EE-EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-IN-FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~-~~-~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||++.+.+... ...+..|..+ .. .... ...+.+|||||... +..+...
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~l~~~ 69 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSF---PDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAE----------FTAMRDQ 69 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC---CCCcCCcccceEEEEEEECCEEEEEEEEeCCCchh----------hHHHhHH
Confidence 5899999999999999999987631 1222222221 11 1111 24688999999532 2334444
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhH-HHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~-~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
++.. +|++++|+|.++..+.... .+.+.+.. .+.|+++|.||+|+...
T Consensus 70 ~~~~---~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~ 122 (172)
T cd04141 70 YMRC---GEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQ 122 (172)
T ss_pred Hhhc---CCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhc
Confidence 4443 8999999998875443332 33344432 36899999999998653
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-14 Score=115.31 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=68.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCce-EEE--EEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT-~~~--~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.+|+++|.+|+|||||++++.+.. .....+..++ .+. ..... ...+.+|||||... +.....
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~ 68 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGA--FLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQER----------FRSVTH 68 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC--CCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHH----------HHHhhH
Confidence 379999999999999999998873 2222222222 222 11222 24688999999421 222233
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~ 217 (243)
.++. .+|++++|+|.+...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 69 ~~~~---~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 120 (191)
T cd04112 69 AYYR---DAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSG 120 (191)
T ss_pred HHcc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchh
Confidence 3333 3899999999876422221 234444433 2579999999999964
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.2e-14 Score=116.48 Aligned_cols=110 Identities=22% Similarity=0.250 Sum_probs=72.7
Q ss_pred EEEEecCCCCchhHHHHHHhccccccc-----------c------cCCCCceEEEE---EEE-----eCCcEEEEeCCCC
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVR-----------T------SDKPGLTQTIN---FFK-----LGTKLCLVDLPGY 148 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~-----------v------s~~~gtT~~~~---~~~-----~~~~~~liDTpG~ 148 (243)
+|+++|..|+|||||+++|+....... . ....|+|.... +.. ....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999997532110 0 00122232211 111 1256899999997
Q ss_pred CCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
.+. ......++. .+|++++|+|+..+.......+++.+...+.|+++|+||+|+.
T Consensus 82 ~~f----------~~~~~~~~~---~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNF----------MDEVAAALR---LSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred cch----------HHHHHHHHH---hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 541 111222222 2899999999988766666666666666679999999999986
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=114.17 Aligned_cols=113 Identities=15% Similarity=0.016 Sum_probs=70.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE---EEE--EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~---~~~--~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||+++|++.. . .....++..+. ... .....+.+|||||..+.. .+...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~----------~~~~~ 67 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGK-F--PTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYD----------RLRPL 67 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-C--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCccccc----------ccchh
Confidence 479999999999999999999873 1 11122222211 111 113468899999975311 11111
Q ss_pred HHhcccCccEEEEEEeCCCCCChh--hHHHHHHHHhc--CCcEEEEeecCCCCChHHH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPR--DHELISLMERS--QTKYQVVLTKTDTVFPIDV 221 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~--~~~~~~~l~~~--~~p~i~v~nK~D~~~~~~~ 221 (243)
++ ..+|++++|+|.+...+.. ...++..+... +.|+++|+||+|+..+...
T Consensus 68 ~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 122 (171)
T cd00157 68 SY---PNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENT 122 (171)
T ss_pred hc---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhh
Confidence 11 3489999999987632222 23345544433 5999999999999876543
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-14 Score=118.42 Aligned_cols=110 Identities=18% Similarity=0.200 Sum_probs=70.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCC-ceEEEEE--EEe----CCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINF--FKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~g-tT~~~~~--~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
.+|+++|.+|+|||||+|+|++.. ....+.. .+.+... ... ...+.+|||||... +..+.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~---~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~----------~~~l~ 67 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEG---FGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI----------GGKML 67 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCC---CCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH----------HHHHH
Confidence 379999999999999999999873 2222222 2233321 111 24678999999521 23344
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc------CCcEEEEeecCCCCCh
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS------QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~------~~p~i~v~nK~D~~~~ 218 (243)
..++.. +|++++|+|.+...+... ..++..+... ..|+++|.||+|+...
T Consensus 68 ~~~~~~---ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~ 124 (215)
T cd04109 68 DKYIYG---AHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHN 124 (215)
T ss_pred HHHhhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccc
Confidence 444443 999999999876422222 2344444432 3579999999999753
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-14 Score=128.42 Aligned_cols=141 Identities=23% Similarity=0.308 Sum_probs=93.8
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccc-ccccccCCCCceEEEEEEE-----------------e------------CCc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFK-----------------L------------GTK 139 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~-~~~~vs~~~gtT~~~~~~~-----------------~------------~~~ 139 (243)
....+|+++|..++|||||+.+|++.. +........|.|.++.+.. . ...
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 355789999999999999999997641 0011112345565543210 0 146
Q ss_pred EEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCC-ChhhHHHHHHHHhcCC-cEEEEeecCCCCC
Q 026112 140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVF 217 (243)
Q Consensus 140 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-~~~~~~~~~~l~~~~~-p~i~v~nK~D~~~ 217 (243)
+.++||||.. .+...++.....+|++++|+|+.++. .....+.+..+...+. |+++|+||+|+.+
T Consensus 87 i~liDtPG~~-------------~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~ 153 (411)
T PRK04000 87 VSFVDAPGHE-------------TLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVS 153 (411)
T ss_pred EEEEECCCHH-------------HHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeecccc
Confidence 8999999952 34455666666689999999999775 5566666677766665 6999999999987
Q ss_pred hHHHHHHHHHHHHHHhhC---CCccccCC
Q 026112 218 PIDVARRAMQIEESLKAN---NSLVQPVV 243 (243)
Q Consensus 218 ~~~~~~~~~~l~~~l~~~---~~~~~pi~ 243 (243)
........+.++..+... +.+++|+|
T Consensus 154 ~~~~~~~~~~i~~~l~~~~~~~~~ii~vS 182 (411)
T PRK04000 154 KERALENYEQIKEFVKGTVAENAPIIPVS 182 (411)
T ss_pred chhHHHHHHHHHHHhccccCCCCeEEEEE
Confidence 655544455566555432 34455553
|
|
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=114.07 Aligned_cols=109 Identities=18% Similarity=0.230 Sum_probs=67.6
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE-EEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~-~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (243)
+|+++|.+|+|||||+++|.+.. . ....+.+..+.. ....+..+.+|||||.... ......++.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~-~--~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~----------~~~~~~~~~-- 65 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE-F--MQPIPTIGFNVETVEYKNLKFTIWDVGGKHKL----------RPLWKHYYL-- 65 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC-C--CCcCCcCceeEEEEEECCEEEEEEECCCChhc----------chHHHHHhc--
Confidence 58899999999999999999872 1 222221111222 1223567899999996431 112223333
Q ss_pred cCccEEEEEEeCCCC--CChhhHHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 173 VSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
.+|++++|+|++.. +......+...+.. .+.|+++|+||+|+...
T Consensus 66 -~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 115 (169)
T cd04158 66 -NTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA 115 (169)
T ss_pred -cCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC
Confidence 38999999998764 22222223333322 24799999999999643
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-14 Score=113.33 Aligned_cols=112 Identities=13% Similarity=0.042 Sum_probs=68.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
++|+++|.+|||||||+++++.........+..+......... ....+.+|||||.... ..+...++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~~~ 70 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKF----------GGLRDGYY 70 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhh----------ccccHHHh
Confidence 3799999999999999999986521122222222211111111 1346889999996431 11222233
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc--CCcEEEEeecCCCCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVF 217 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~--~~p~i~v~nK~D~~~ 217 (243)
. .+|++++|+|.+.+.+... ..+++.+... +.|+++|+||+|+..
T Consensus 71 ~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~ 118 (166)
T cd00877 71 I---GGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKD 118 (166)
T ss_pred c---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhccc
Confidence 2 3899999999886532222 2344444332 699999999999973
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.9e-14 Score=113.10 Aligned_cols=113 Identities=17% Similarity=0.162 Sum_probs=70.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
..+|+++|.+|+|||||++++..... ....+..|.+.. .....+..+.+|||||... +..+...|+..
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~-~~~~pt~g~~~~-~~~~~~~~~~i~D~~Gq~~----------~~~~~~~~~~~ 84 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEYKNISFTVWDVGGQDK----------IRPLWRHYFQN 84 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCC-ccccCCcceeEE-EEEECCEEEEEEECCCCHH----------HHHHHHHHhcc
Confidence 46999999999999999999986522 222222222211 1112356799999999521 22333444443
Q ss_pred ccCccEEEEEEeCCCCCChh--hHHHHHHHHh---cCCcEEEEeecCCCCChH
Q 026112 172 RVSLKRVCLLIDTKWGVKPR--DHELISLMER---SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~--~~~~~~~l~~---~~~p~i~v~nK~D~~~~~ 219 (243)
+|++++|+|++...+-. ..++.+.+.. .+.|+++|+||+|+....
T Consensus 85 ---a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~ 134 (181)
T PLN00223 85 ---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
T ss_pred ---CCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC
Confidence 89999999988642111 1222233322 268999999999987543
|
|
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.8e-15 Score=115.93 Aligned_cols=110 Identities=17% Similarity=0.155 Sum_probs=67.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEE-----EEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~-----~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||++++++.. .+..+.+++.+ ......+..+.+|||||..+ +..+...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~ 68 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGH---FVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDE----------YSILPQK 68 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC---CccccCcchhhhEEEEEEECCEEEEEEEEECCChHh----------hHHHHHH
Confidence 489999999999999999999773 22323333321 22211234578999999642 1222222
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHH-H---hcCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM-E---RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l-~---~~~~p~i~v~nK~D~~~~ 218 (243)
++. .++++++++|.+...+... ..+...+ . ..+.|+++|+||+|+...
T Consensus 69 ~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 121 (180)
T cd04137 69 YSI---GIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQ 121 (180)
T ss_pred HHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhc
Confidence 332 2899999999876422211 1222222 2 236799999999998743
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.5e-14 Score=113.47 Aligned_cols=111 Identities=16% Similarity=0.185 Sum_probs=69.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE-EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF-KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~-~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
.++|+++|.+|+|||||++++..... . ...|.+..+.... ..+..+.+|||||... +..+...|+.
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~-~--~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~~~~~~ 79 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES-V--TTIPTIGFNVETVTYKNISFTVWDVGGQDK----------IRPLWRHYYT 79 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC-C--CcCCccccceEEEEECCEEEEEEECCCChh----------hHHHHHHHhC
Confidence 47999999999999999999965422 1 2222222222211 2356789999999632 1223344444
Q ss_pred cccCccEEEEEEeCCCCC--ChhhHHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 171 TRVSLKRVCLLIDTKWGV--KPRDHELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~--~~~~~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
. +|++++|+|++... ......+...+.. .+.|+++|+||+|+...
T Consensus 80 ~---ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 129 (175)
T smart00177 80 N---TQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA 129 (175)
T ss_pred C---CCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC
Confidence 3 99999999987542 1122222233322 25799999999998643
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-14 Score=117.19 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=73.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
...+|+++|.+|+|||||+++|++... .....+....+. ..... ...+.+|||||... +..+.
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~--~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~----------~~~~~ 78 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEF--CLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER----------YRAIT 78 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHH----------HHHHH
Confidence 346999999999999999999998732 112222222222 12222 24788999999522 23344
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
..++.. ++++++|+|.+...+... ..++..+.. .+.|+++|+||+|+...
T Consensus 79 ~~~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 132 (216)
T PLN03110 79 SAYYRG---AVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHL 132 (216)
T ss_pred HHHhCC---CCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccc
Confidence 444443 899999999876432222 245555543 36899999999998643
|
|
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-14 Score=116.57 Aligned_cols=108 Identities=15% Similarity=0.171 Sum_probs=67.8
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
+|+++|.+|+|||||++++++.. ....+..++.+.. .+.. + ..+.+|||||... +..+...+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~~~ 67 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDT---FEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYS----------FPAMRKLS 67 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC---CCccCCCchhhheeEEEEECCEEEEEEEEECCCchh----------hhHHHHHH
Confidence 58999999999999999999873 1223333332221 1111 2 4688999999643 12222223
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHH----hcCCcEEEEeecCCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~ 217 (243)
+. .+|++++|+|+.+..+... ..++..+. ..+.|+++|+||+|+..
T Consensus 68 ~~---~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 68 IQ---NSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred hh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 33 3899999999876422222 22222222 24689999999999975
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-14 Score=112.98 Aligned_cols=112 Identities=15% Similarity=0.064 Sum_probs=67.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
...+|+++|.+|+|||||++++++... . ....+..+.+. .... ....+.+|||||... +..+.
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~ 71 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKF-D-TQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER----------FRSLR 71 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCC-C-cCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHH----------HHHhH
Confidence 347999999999999999999987632 1 11122222221 1111 134578999999421 23334
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH-------hcCCcEEEEeecCCCCC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-------RSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~-------~~~~p~i~v~nK~D~~~ 217 (243)
..++.. +|++++|+|.+...+... ..+...+. ..+.|+++|+||+|+..
T Consensus 72 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (170)
T cd04116 72 TPFYRG---SDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE 128 (170)
T ss_pred HHHhcC---CCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc
Confidence 444433 899999999775422221 12332222 13579999999999863
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=112.59 Aligned_cols=109 Identities=13% Similarity=0.078 Sum_probs=70.1
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
+|+++|++|+|||||++++++.. ....+.+++.+... ... ...+.++||||... +..+...+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~ 67 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT---FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE----------FSAMRDLY 67 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC---CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH----------HHHHHHHH
Confidence 58999999999999999999873 34444445443322 122 24688999999632 12233333
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
+. .+|++++|+|.....+... ..+...+.. .+.|+++|+||+|+...
T Consensus 68 ~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 119 (160)
T cd00876 68 IR---QGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENE 119 (160)
T ss_pred Hh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccccc
Confidence 33 3899999999875422111 222222321 36899999999999863
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.2e-15 Score=127.39 Aligned_cols=141 Identities=25% Similarity=0.202 Sum_probs=83.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc----ccccccCCCCceEEEEEEEe--CCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~----~~~~vs~~~gtT~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..+|+++|.+|+|||||||+|.|-. ..+.++. ..||.....|.. -+.+.+||.||++.+..+. ..++
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv-~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~------~~Yl 107 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGV-VETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPP------EEYL 107 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSS-HSCCTS-EEEE-SS-TTEEEEEE--GGGSS--H------HHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCC-CcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCH------HHHH
Confidence 3699999999999999999998742 1222222 235666666654 3579999999997643221 1222
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC------------Ch-HHHHHHHHHHHHHH
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV------------FP-IDVARRAMQIEESL 232 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~------------~~-~~~~~~~~~l~~~l 232 (243)
... .....|.++++.+. .+...+..+.+.++..++|+++|.||+|.. .. .-+.+..+.+.+.+
T Consensus 108 ~~~--~~~~yD~fiii~s~--rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L 183 (376)
T PF05049_consen 108 KEV--KFYRYDFFIIISSE--RFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL 183 (376)
T ss_dssp HHT--TGGG-SEEEEEESS--S--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred HHc--cccccCEEEEEeCC--CCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence 221 12347887776654 477899999999999999999999999962 11 12456667777788
Q ss_pred hhCCCccccCC
Q 026112 233 KANNSLVQPVV 243 (243)
Q Consensus 233 ~~~~~~~~pi~ 243 (243)
...+..-.|||
T Consensus 184 ~k~gv~~P~VF 194 (376)
T PF05049_consen 184 QKAGVSEPQVF 194 (376)
T ss_dssp HCTT-SS--EE
T ss_pred HHcCCCcCceE
Confidence 87776555553
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-14 Score=112.02 Aligned_cols=114 Identities=18% Similarity=0.239 Sum_probs=70.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.++|+++|.+|||||||++++++.. ......+..+.+... ... + ..+.++||||... +.....
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~ 74 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGL--FPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER----------FRSITQ 74 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHH
Confidence 4799999999999999999998652 111222222222211 112 3 4578899999532 222333
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH---hcCCcEEEEeecCCCCChHH
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~p~i~v~nK~D~~~~~~ 220 (243)
.++.. +|++++|+|.+.+.+... ..++..+. ..+.|+++|+||+|+....+
T Consensus 75 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~ 129 (169)
T cd04114 75 SYYRS---ANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERRE 129 (169)
T ss_pred HHhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccc
Confidence 34433 899999999876422211 23433333 23689999999999975443
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.3e-14 Score=129.65 Aligned_cols=137 Identities=20% Similarity=0.233 Sum_probs=92.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccc-ccccCC-------------------CCceEE---EEEEEeCCcEEEEeCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDK-------------------PGLTQT---INFFKLGTKLCLVDLPGY 148 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~-~~vs~~-------------------~gtT~~---~~~~~~~~~~~liDTpG~ 148 (243)
..+|+++|.+|+|||||+++|+..... ...+.. .|.|.. ..+...+..+.+|||||+
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 459999999999999999999742110 111111 112221 223334678999999997
Q ss_pred CCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHH
Q 026112 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI 228 (243)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l 228 (243)
.+. ......++. .+|++++|+|+..++......+++.+...++|+++++||+|+.... ..+.++.+
T Consensus 90 ~df----------~~~~~~~l~---~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~-~~~~l~~i 155 (526)
T PRK00741 90 EDF----------SEDTYRTLT---AVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGRE-PLELLDEI 155 (526)
T ss_pred hhh----------HHHHHHHHH---HCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccC-HHHHHHHH
Confidence 431 111122222 3899999999988887777788888888899999999999987543 44556777
Q ss_pred HHHHhhCCCccc-cC
Q 026112 229 EESLKANNSLVQ-PV 242 (243)
Q Consensus 229 ~~~l~~~~~~~~-pi 242 (243)
++.++....+++ ||
T Consensus 156 ~~~l~~~~~p~~~Pi 170 (526)
T PRK00741 156 EEVLGIACAPITWPI 170 (526)
T ss_pred HHHhCCCCeeEEecc
Confidence 887776555444 54
|
|
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-14 Score=114.59 Aligned_cols=110 Identities=14% Similarity=0.041 Sum_probs=68.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceE-EEE--EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~-~~~--~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.+|+++|.+|+|||||++++++... ...+.+++. +.. .... ...+.+|||||... +..+..
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~---~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~----------~~~~~~ 67 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKF---PEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEE----------YDRLRP 67 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcC---CCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchh----------HHHHHH
Confidence 3799999999999999999998731 222322222 111 1111 23578999999532 122222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhH--HHHHHHHh--cCCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~--~~~p~i~v~nK~D~~~~ 218 (243)
.++ ..+|++++|+|.++..+.... .++..+.. .+.|+++|+||+|+...
T Consensus 68 ~~~---~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 120 (187)
T cd04132 68 LSY---PDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKD 120 (187)
T ss_pred HhC---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhC
Confidence 232 349999999998764333322 23333332 36899999999998653
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-14 Score=114.91 Aligned_cols=133 Identities=19% Similarity=0.174 Sum_probs=80.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCC-CceEEEEE--EE-e--CCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTINF--FK-L--GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~-gtT~~~~~--~~-~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..+|+++|..|+|||||+.++..... ..++. ..+.+... .. . ...+.+|||||... +..+.
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~---~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~----------~~~l~ 72 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGST---ESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGR----------FCTIF 72 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC---CCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHH----------HHHHH
Confidence 47999999999999999999997631 12221 12222211 11 1 25688999999632 23344
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh--cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~--~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
..|+. .+|++++|+|.+...+... ..+++.+.. .+.|+++|.||+|+.....+ ..+..++.....+..++++
T Consensus 73 ~~~~~---~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v--~~~~~~~~a~~~~~~~~e~ 147 (189)
T cd04121 73 RSYSR---GAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQV--ATEQAQAYAERNGMTFFEV 147 (189)
T ss_pred HHHhc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCC--CHHHHHHHHHHcCCEEEEe
Confidence 44444 3999999999876533332 245555543 26899999999999653221 1223344444444444443
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-14 Score=113.90 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=67.2
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
+|+++|.+|+|||||+++++... ....+++++... ..... ...+.+|||||...... .....+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~~ 68 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR---FIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT---------EQLERS 68 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc---cccccCCChHHhceEEEEECCEEEEEEEEECCCCccccc---------chHHHH
Confidence 48999999999999999998752 223333333211 11112 23578999999753100 111222
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh-----cCCcEEEEeecCCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-----~~~p~i~v~nK~D~~~ 217 (243)
+. .+|++++|+|.+...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 69 ~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 120 (165)
T cd04146 69 IR---WADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH 120 (165)
T ss_pred HH---hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH
Confidence 22 2899999999876522221 233444432 3689999999999854
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.9e-14 Score=122.68 Aligned_cols=86 Identities=24% Similarity=0.301 Sum_probs=69.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---------------------CCcEEEEeCCCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---------------------GTKLCLVDLPGYGF 150 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---------------------~~~~~liDTpG~~~ 150 (243)
.++++|+|.||+|||||+|+++.. . +.+.++|+||.+++..-. ...+.++|.+|+-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~-~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~ 79 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKA-G-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVK 79 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcC-C-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCC
Confidence 468999999999999999999999 4 888999999998765321 13688999999865
Q ss_pred CccchHHHHHHHHHHHHHHhcccCccEEEEEEeCC
Q 026112 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (243)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~ 185 (243)
..+.. +.+..+|+...+++|.+++|+|++
T Consensus 80 GAs~G------eGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 80 GASKG------EGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred CcccC------CCcchHHHHhhhhcCeEEEEEEec
Confidence 43322 246677888888899999999975
|
|
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.1e-14 Score=130.26 Aligned_cols=126 Identities=23% Similarity=0.267 Sum_probs=86.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccc----cc----------cCCCCceEEE---EEEEeCCcEEEEeCCCCCCCccch
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVV----RT----------SDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKE 155 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~----~v----------s~~~gtT~~~---~~~~~~~~~~liDTpG~~~~~~~~ 155 (243)
.+|+++|+.++|||||+++|+...... .+ ....|.|... .+.+.+..+.+|||||+.+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~D----- 76 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHAD----- 76 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHH-----
Confidence 479999999999999999998642100 01 1123555543 2334578899999999743
Q ss_pred HHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHH
Q 026112 156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 232 (243)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l 232 (243)
+...+..+++ .+|++++|+|+..+...+...++..+...++|+++|+||+|+.... .....+.+.+.+
T Consensus 77 -----F~~ev~~~l~---~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~-~~~v~~ei~~l~ 144 (594)
T TIGR01394 77 -----FGGEVERVLG---MVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSAR-PDEVVDEVFDLF 144 (594)
T ss_pred -----HHHHHHHHHH---hCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcC-HHHHHHHHHHHH
Confidence 1122233333 3899999999998888888888888888999999999999986432 223334444444
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.2e-14 Score=116.30 Aligned_cols=115 Identities=11% Similarity=0.018 Sum_probs=74.1
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
...++|+++|.+|+|||||+++++.........+..|++....... ....+.+|||||... +..+..
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~ 80 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLRD 80 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchh----------hhhhhH
Confidence 3457999999999999999999876632233344444433322221 135788999999643 122333
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh--cCCcEEEEeecCCCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~--~~~p~i~v~nK~D~~~ 217 (243)
.|+.. +|++++|+|.+...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 81 ~~~~~---~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~ 131 (219)
T PLN03071 81 GYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (219)
T ss_pred HHccc---ccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhh
Confidence 34433 899999999886532222 234444432 3689999999999853
|
|
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-14 Score=112.21 Aligned_cols=111 Identities=14% Similarity=0.113 Sum_probs=69.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
++|+++|.+|+|||||++++.+... ...+.+++.+. ..... ...+.+|||||... +..+...
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 68 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVF---IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQ----------FTAMREL 68 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC---CcccCCcchheEEEEEEECCEEEEEEEEeCCCccc----------chhhhHH
Confidence 5799999999999999999997732 22233333221 11111 24678999999643 1223333
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH----hcCCcEEEEeecCCCCChH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~~~ 219 (243)
++.. ++++++|+|.+.+.+-.. ..+.+.+. ..+.|+++|+||+|+....
T Consensus 69 ~~~~---~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~ 122 (168)
T cd04177 69 YIKS---GQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDR 122 (168)
T ss_pred HHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccC
Confidence 4333 899999999875321111 22333332 2368999999999997543
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-14 Score=113.05 Aligned_cols=110 Identities=15% Similarity=0.083 Sum_probs=71.5
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||++++.... ....+.+|..+... ... + ..+.+|||||... +..+...
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~---f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 68 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK---FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED----------YDRLRPL 68 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC---CCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccc----------hhhhhhh
Confidence 589999999999999999999863 23334444332111 111 2 4678999999643 1122222
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhH--HHHHHHHhc--CCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~~--~~p~i~v~nK~D~~~~ 218 (243)
++. .+|++++|+|.+...+.... .++..+... +.|+++|.||+|+...
T Consensus 69 ~~~---~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~ 120 (175)
T cd01874 69 SYP---QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 120 (175)
T ss_pred hcc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhC
Confidence 333 38999999998765333332 355555432 6899999999998654
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.9e-14 Score=130.13 Aligned_cols=128 Identities=20% Similarity=0.208 Sum_probs=83.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccc-------cccc------CCCCceEEEEEE---Ee--C---CcEEEEeCCCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGV-------VRTS------DKPGLTQTINFF---KL--G---TKLCLVDLPGYGF 150 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~-------~~vs------~~~gtT~~~~~~---~~--~---~~~~liDTpG~~~ 150 (243)
..+|+++|..++|||||+++|+..... ..+. ...|.|...... +. + ..+.+|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 358999999999999999999875210 1111 123566553221 11 2 5689999999853
Q ss_pred CccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHH
Q 026112 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (243)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~ 230 (243)
+...+..++.. +|++++|+|++.+........+..+...+.|+++|+||+|+.... .....+.+.+
T Consensus 83 ----------F~~~v~~~l~~---aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~-~~~~~~el~~ 148 (595)
T TIGR01393 83 ----------FSYEVSRSLAA---CEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSAD-PERVKKEIEE 148 (595)
T ss_pred ----------HHHHHHHHHHh---CCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccC-HHHHHHHHHH
Confidence 12223334433 899999999998877766555555555689999999999986432 2223344444
Q ss_pred HHh
Q 026112 231 SLK 233 (243)
Q Consensus 231 ~l~ 233 (243)
.++
T Consensus 149 ~lg 151 (595)
T TIGR01393 149 VIG 151 (595)
T ss_pred HhC
Confidence 443
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.6e-14 Score=128.93 Aligned_cols=128 Identities=21% Similarity=0.186 Sum_probs=88.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccccc--------------ccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR--------------TSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYA 153 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~--------------vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~ 153 (243)
...+|+++|..++|||||+++|+....... .....|.|...... +.+..+.+|||||+.+.
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df-- 81 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADF-- 81 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchh--
Confidence 356899999999999999999997421100 01234555554322 23678999999997541
Q ss_pred chHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHH
Q 026112 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 232 (243)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l 232 (243)
...+..+++. +|++++|+|+..+...+...++..+...++|.++|+||+|+... ......+.+.+.+
T Consensus 82 --------~~~v~~~l~~---aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a-~~~~vl~ei~~l~ 148 (607)
T PRK10218 82 --------GGEVERVMSM---VDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGA-RPDWVVDQVFDLF 148 (607)
T ss_pred --------HHHHHHHHHh---CCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCC-chhHHHHHHHHHH
Confidence 1222333333 99999999999887778888888888889999999999998743 2333444555544
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.9e-14 Score=122.21 Aligned_cols=83 Identities=22% Similarity=0.211 Sum_probs=61.9
Q ss_pred EEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE--E-------------------------eCCcEEEEeCCC
Q 026112 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--K-------------------------LGTKLCLVDLPG 147 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~--~-------------------------~~~~~~liDTpG 147 (243)
|+++|.||+|||||+|+|++.. ..++++|+||.++... . ....+.++||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~--~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD--VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC--CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 5899999999999999999984 6789999999886532 1 124689999999
Q ss_pred CCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCC
Q 026112 148 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (243)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~ 185 (243)
+...... ...+...++...+.+|++++|+|++
T Consensus 79 lv~ga~~------~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 79 LVPGAHE------GKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCCCccc------hhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 8643211 1234445555556699999999986
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.2e-14 Score=128.64 Aligned_cols=133 Identities=20% Similarity=0.262 Sum_probs=88.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccc-ccccC-------------------CCCceEEE---EEEEeCCcEEEEeCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSD-------------------KPGLTQTI---NFFKLGTKLCLVDLPGY 148 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~-~~vs~-------------------~~gtT~~~---~~~~~~~~~~liDTpG~ 148 (243)
..+|+++|.+|+|||||+++|+..... ...+. ..|.|... .+...+..+.++||||+
T Consensus 11 ~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~ 90 (527)
T TIGR00503 11 RRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGH 90 (527)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCCh
Confidence 469999999999999999998643111 11111 11222222 23334778999999997
Q ss_pred CCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHH
Q 026112 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI 228 (243)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l 228 (243)
.+. ....+ .++ ..+|++++|+|+..++......+++.+...++|+++++||+|+... ...+..+.+
T Consensus 91 ~df-----~~~~~-----~~l---~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~-~~~~ll~~i 156 (527)
T TIGR00503 91 EDF-----SEDTY-----RTL---TAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIR-DPLELLDEV 156 (527)
T ss_pred hhH-----HHHHH-----HHH---HhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCC-CHHHHHHHH
Confidence 421 11111 222 2399999999998887777777888887788999999999998643 244556677
Q ss_pred HHHHhhCCCc
Q 026112 229 EESLKANNSL 238 (243)
Q Consensus 229 ~~~l~~~~~~ 238 (243)
+..++....+
T Consensus 157 ~~~l~~~~~~ 166 (527)
T TIGR00503 157 ENELKINCAP 166 (527)
T ss_pred HHHhCCCCcc
Confidence 7777655433
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-14 Score=115.16 Aligned_cols=129 Identities=19% Similarity=0.283 Sum_probs=70.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.+.|+|+|++|+|||+|+..|........++.. .-...+.. .+..+.+||+||+..- . ..+...
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~---e~n~~~~~~~~~~~~~~lvD~PGH~rl--r-------~~~~~~- 69 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM---ENNIAYNVNNSKGKKLRLVDIPGHPRL--R-------SKLLDE- 69 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S---SEEEECCGSSTCGTCECEEEETT-HCC--C-------HHHHHH-
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc---cCCceEEeecCCCCEEEEEECCCcHHH--H-------HHHHHh-
Confidence 368999999999999999999987321111111 00111111 2568999999997541 1 112222
Q ss_pred HhcccCccEEEEEEeCCCCCChhh----HHHHHHHH-----hcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD----HELISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~----~~~~~~l~-----~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~ 234 (243)
+.....+.+|+||+|++. ....- ..++..+. ..+.|+++++||.|+............++++++.
T Consensus 70 ~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE~Ei~~ 143 (181)
T PF09439_consen 70 LKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLEKEIDK 143 (181)
T ss_dssp HHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHHHHHHH
T ss_pred hhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHHHHHHH
Confidence 011233899999999874 11212 22333332 2368999999999999876666666666666553
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.2e-14 Score=113.13 Aligned_cols=110 Identities=16% Similarity=0.206 Sum_probs=71.7
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCc-eEEEE--EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL-TQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gt-T~~~~--~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.|+++|..|+|||||++++..... ...+..| +.+.. .... ...+.+|||+|... +..+...
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f---~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~----------~~~l~~~ 68 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF---CEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQER----------FNSITSA 68 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC---CCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchh----------hHHHHHH
Confidence 589999999999999999987631 2222222 22322 1122 25678999999532 2334455
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCChH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~~ 219 (243)
|++. +|++++|+|.++..+... ..+++.+.. .+.|+++|.||+|+....
T Consensus 69 y~~~---ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~ 121 (202)
T cd04120 69 YYRS---AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121 (202)
T ss_pred HhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence 5554 999999999886533322 234454543 258999999999997533
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.1e-14 Score=113.35 Aligned_cols=111 Identities=22% Similarity=0.247 Sum_probs=69.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
.++|+++|++|||||||+++|.+.. .....+..+.+. ..+...+..+.++||||... . ......++.
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~-~~~~~~T~~~~~-~~i~~~~~~~~l~D~~G~~~------~----~~~~~~~~~- 85 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDR-LAQHVPTLHPTS-EELTIGNIKFKTFDLGGHEQ------A----RRLWKDYFP- 85 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC-CcccCCccCcce-EEEEECCEEEEEEECCCCHH------H----HHHHHHHhc-
Confidence 4789999999999999999999863 222222222221 11112356789999999532 1 122233333
Q ss_pred ccCccEEEEEEeCCCCC--ChhhHHHHHHHH---hcCCcEEEEeecCCCCC
Q 026112 172 RVSLKRVCLLIDTKWGV--KPRDHELISLME---RSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~--~~~~~~~~~~l~---~~~~p~i~v~nK~D~~~ 217 (243)
.+|++++|+|+++.. ......+...+. ..+.|+++|+||+|+..
T Consensus 86 --~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 86 --EVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred --cCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 389999999987531 112222333332 23589999999999974
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.8e-14 Score=111.77 Aligned_cols=108 Identities=16% Similarity=0.035 Sum_probs=67.5
Q ss_pred EEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
|+++|.+|+|||||++++++.. ....+..+..+.. .... ...+.+|||||.... ..+...++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~ 67 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA---FPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDY----------DRLRPLSY 67 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC---CCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCccc----------chhchhhc
Confidence 5799999999999999999873 1222222222211 1111 235889999996431 11222222
Q ss_pred hcccCccEEEEEEeCCCCCChhh--HHHHHHHHhc--CCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~D~~~~ 218 (243)
..+|++++|+|.+...+... ..++..+... +.|+++|.||+|+...
T Consensus 68 ---~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 117 (174)
T smart00174 68 ---PDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRED 117 (174)
T ss_pred ---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhC
Confidence 24899999999876422222 2345555432 6899999999999753
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.6e-14 Score=125.27 Aligned_cols=134 Identities=18% Similarity=0.213 Sum_probs=94.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccc-----------------------------cccCCCCceEEEEEEE---eCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-----------------------------RTSDKPGLTQTINFFK---LGT 138 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~-----------------------------~vs~~~gtT~~~~~~~---~~~ 138 (243)
...+|+++|..++|||||+.+|+...... ......|.|.++.... .+.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 45689999999999999999988631100 0011346777765443 256
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCC-------ChhhHHHHHHHHhcCCc-EEEEe
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDHELISLMERSQTK-YQVVL 210 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-------~~~~~~~~~~l~~~~~p-~i~v~ 210 (243)
.+.++||||+.+ +..........+|++++|+|+..+. ..+..+.+..+...++| +++++
T Consensus 86 ~i~lIDtPGh~~-------------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~v 152 (446)
T PTZ00141 86 YFTIIDAPGHRD-------------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCI 152 (446)
T ss_pred EEEEEECCChHH-------------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEE
Confidence 899999999632 3444444455699999999998875 35677888888888987 67999
Q ss_pred ecCCCC----ChHHHHHHHHHHHHHHhhCCC
Q 026112 211 TKTDTV----FPIDVARRAMQIEESLKANNS 237 (243)
Q Consensus 211 nK~D~~----~~~~~~~~~~~l~~~l~~~~~ 237 (243)
||+|.. ....+.+..+.+.+.+...+.
T Consensus 153 NKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~ 183 (446)
T PTZ00141 153 NKMDDKTVNYSQERYDEIKKEVSAYLKKVGY 183 (446)
T ss_pred EccccccchhhHHHHHHHHHHHHHHHHhcCC
Confidence 999953 234567777778777765443
|
|
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.6e-14 Score=112.44 Aligned_cols=111 Identities=18% Similarity=0.140 Sum_probs=69.7
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEE-----EEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~-----~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
+|+++|.+|+|||||++++++... ...+.+|..+ +........+.+|||||... +..+...+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~---~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~----------~~~l~~~~ 68 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYF---PQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEE----------FDRLRSLS 68 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CCccCCcceeeeEEEEEECCEEEEEEEEECCCChh----------cccccccc
Confidence 789999999999999999998732 1222222111 11111134688999999632 11122223
Q ss_pred HhcccCccEEEEEEeCCCCCChhh--HHHHHHHHhc--CCcEEEEeecCCCCChHH
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~D~~~~~~ 220 (243)
+ ..+|++++|+|.+...+... ..++..+... +.|+++|.||+|+....+
T Consensus 69 ~---~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~ 121 (189)
T cd04134 69 Y---ADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARN 121 (189)
T ss_pred c---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChh
Confidence 2 23899999999776433322 2355555432 689999999999976543
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-13 Score=109.92 Aligned_cols=110 Identities=14% Similarity=0.114 Sum_probs=66.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.+|+++|.+|+|||||++++++........+..|.......... ...+.+|||+|... +..+...++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~----------~~~~~~~~~ 70 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE----------FINMLPLVC 70 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchh----------HHHhhHHHC
Confidence 37999999999999999999887321111222221111111222 24688999999532 222333333
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTV 216 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~ 216 (243)
. .+|++++|+|.++..+..+ ..++..+.. ...| ++|+||+|+.
T Consensus 71 ~---~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~ 117 (182)
T cd04128 71 N---DAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLF 117 (182)
T ss_pred c---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhcc
Confidence 3 3899999999876533222 234444433 2356 6889999996
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.9e-14 Score=111.41 Aligned_cols=113 Identities=22% Similarity=0.184 Sum_probs=69.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
++|+++|.+|+|||||++++++........+..|.+........ ...+.+|||||... +......++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~----------~~~~~~~~~ 70 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQER----------FRSLNNSYY 70 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH----------HHhhHHHHc
Confidence 47999999999999999999987321112222222222222222 23578999999532 122233333
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
. .+|++++|+|.+.+.+... ..++..+.. ...|+++|+||+|+...
T Consensus 71 ~---~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~ 120 (188)
T cd04125 71 R---GAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNN 120 (188)
T ss_pred c---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCccc
Confidence 3 3899999999876422221 234444433 24789999999998743
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.3e-14 Score=123.68 Aligned_cols=114 Identities=25% Similarity=0.373 Sum_probs=94.9
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE----eCCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
++.|.|-++|.-..|||||+.+|.+.. ...+..-|.|+.+-.+. .|..++|+||||+. .+.
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~--VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHa-------------AF~ 215 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSS--VAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHA-------------AFS 215 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCc--eehhhcCCccceeceEEEecCCCCEEEEecCCcHH-------------HHH
Confidence 578999999999999999999999883 44556678888874443 48899999999973 233
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
.+..+...-.|.|++|+.+.+++.++..+.++..+..++|+++++||+|....
T Consensus 216 aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a 268 (683)
T KOG1145|consen 216 AMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGA 268 (683)
T ss_pred HHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCC
Confidence 34445556689999999999999999999999999999999999999998754
|
|
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-13 Score=107.71 Aligned_cols=111 Identities=15% Similarity=0.201 Sum_probs=68.6
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
+|+++|.+|+|||||++.+++... .....+....+.. .... ...+.+|||||... +..+...+
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~----------~~~~~~~~ 69 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEF--HSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER----------YQTITKQY 69 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC--CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHh----------HHhhHHHH
Confidence 799999999999999999987732 1122222222221 1122 24678999999532 22233334
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCChH
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~~ 219 (243)
+. .+|++++|+|.+..-+... ..+++.+.. ...|+++|.||+|+....
T Consensus 70 ~~---~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~ 121 (161)
T cd04117 70 YR---RAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKR 121 (161)
T ss_pred hc---CCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 33 3899999999876422222 234443332 257999999999997543
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.9e-14 Score=109.78 Aligned_cols=133 Identities=17% Similarity=0.141 Sum_probs=85.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCc---eEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL---TQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gt---T~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
-.++|+++|.+|+|||-|+-++.+..........-|+ -+.+.......++.+|||+|. +.+..+...
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQ----------ERFrtit~s 77 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQ----------ERFRTITSS 77 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeecccc----------HHHhhhhHh
Confidence 3579999999999999999999987321111111121 111122222457999999995 235577778
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCc
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 238 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~ 238 (243)
|++. +|+|++|+|.+...+... ..|++.+... ++|.++|.||+|+.+..... .+..+......+.+
T Consensus 78 yYR~---ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~--~~~a~~fa~~~~~~ 147 (205)
T KOG0084|consen 78 YYRG---AHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVS--TEEAQEFADELGIP 147 (205)
T ss_pred hccC---CCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecC--HHHHHHHHHhcCCc
Confidence 8877 999999999886433332 2455555543 57999999999997654332 22334444444444
|
|
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=112.59 Aligned_cols=113 Identities=16% Similarity=0.156 Sum_probs=69.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
..+|+++|.+|+|||||+|+|++........+..+.+........ ...+.+|||||... +..+...+
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~----------~~~~~~~~ 75 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES----------FRSITRSY 75 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHH----------HHHHHHHH
Confidence 368999999999999999999987311111122222222222222 23578999999531 22233333
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~ 217 (243)
+. .+|++++|+|+....+... ..++..+.. ...|+++|.||+|+..
T Consensus 76 ~~---~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 76 YR---GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (210)
T ss_pred hc---cCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 33 3899999999876422222 133333332 2589999999999865
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.5e-14 Score=128.35 Aligned_cols=125 Identities=20% Similarity=0.211 Sum_probs=83.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCC-CCceEEEEEE--EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTINFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~-~gtT~~~~~~--~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
..+|+++|.||+||||++|+|++. ....++.. ++||+..... ..+..+.+|||||+.++.........+...+..+
T Consensus 118 slrIvLVGKTGVGKSSLINSILGe-kvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGE-VKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcc-ccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 358999999999999999999998 44555554 5566543332 2377899999999988643322222222333334
Q ss_pred HhcccCccEEEEEEeCCC-CCChhhHHHHHHHHh-----cCCcEEEEeecCCCCCh
Q 026112 169 VSTRVSLKRVCLLIDTKW-GVKPRDHELISLMER-----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~-~~~~~~~~~~~~l~~-----~~~p~i~v~nK~D~~~~ 218 (243)
+... .+|+|++|+.... .....+..+++.+.. ....+|+|+|++|..++
T Consensus 197 Lsk~-gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 197 IKKN-PPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HhcC-CCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 4322 3788998886542 222245566666653 35789999999999974
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.1e-14 Score=112.53 Aligned_cols=110 Identities=15% Similarity=0.072 Sum_probs=71.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||++++.+.. ....+.+|+.+... ... ...+.+|||||.... ..+...
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~ 67 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNG---YPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEF----------DKLRPL 67 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhh----------cccccc
Confidence 378999999999999999998762 33445555544311 111 246789999996331 111112
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHh--cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~p~i~v~nK~D~~~~ 218 (243)
+ ...+|++++|+|.....+... ..++..+.. .+.|+++|+||+|+...
T Consensus 68 ~---~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 119 (173)
T cd04130 68 C---YPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTD 119 (173)
T ss_pred c---cCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccC
Confidence 2 234899999999876533322 245555543 35899999999999753
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.4e-14 Score=105.46 Aligned_cols=100 Identities=23% Similarity=0.223 Sum_probs=67.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCC-CCCCccchHHHHHHHHHHHHHHhc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG-YGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG-~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
.+|+++|++|||||||+++|.+.+ . ....|+.+.+. =.+||||| |.+. ..+....+..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~--~----~~~KTq~i~~~-----~~~IDTPGEyiE~----------~~~y~aLi~t 60 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE--I----RYKKTQAIEYY-----DNTIDTPGEYIEN----------PRFYHALIVT 60 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC--C----CcCccceeEec-----ccEEECChhheeC----------HHHHHHHHHH
Confidence 489999999999999999999973 1 11235555543 13499999 4331 1233333444
Q ss_pred ccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 172 RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
..++|+|++|.|++.+.......+. .....|+|-|+||+|+.
T Consensus 61 a~dad~V~ll~dat~~~~~~pP~fa---~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 61 AQDADVVLLLQDATEPRSVFPPGFA---SMFNKPVIGVITKIDLP 102 (143)
T ss_pred HhhCCEEEEEecCCCCCccCCchhh---cccCCCEEEEEECccCc
Confidence 4569999999998865322222222 23468999999999999
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.9e-14 Score=114.83 Aligned_cols=113 Identities=15% Similarity=0.066 Sum_probs=67.9
Q ss_pred CEEEEecCCCCchhHHHHHHhccccc-ccccCCCC---ceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPG---LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~-~~vs~~~g---tT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
++|+++|.+|+|||||++++++.... ....+..+ ....+........+.+|||||... .. .. .+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~-----~~----~~---~~ 68 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM-----WT----ED---SC 68 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch-----HH----Hh---HH
Confidence 37999999999999999999765221 11111111 111122211245688999999741 00 11 11
Q ss_pred HhcccCccEEEEEEeCCCCCChh-hHHHHHHHHh----cCCcEEEEeecCCCCChH
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER----SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~----~~~p~i~v~nK~D~~~~~ 219 (243)
+.. .+|++++|+|.++..+.. ...++..+.. .+.|+++|+||+|+....
T Consensus 69 ~~~--~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~ 122 (221)
T cd04148 69 MQY--QGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSR 122 (221)
T ss_pred hhc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccc
Confidence 110 489999999987642222 1344444433 368999999999997543
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=131.56 Aligned_cols=136 Identities=19% Similarity=0.241 Sum_probs=95.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccc-c---cc------cC------CCCceEEE---EEEEeCCcEEEEeCCCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-V---RT------SD------KPGLTQTI---NFFKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~-~---~v------s~------~~gtT~~~---~~~~~~~~~~liDTpG~~~~ 151 (243)
...+|+++|..|+|||||+++|+...+. . .+ .+ ..+.|... .+...+..+.+|||||+.+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d- 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID- 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH-
Confidence 4579999999999999999999864210 0 00 00 12333332 2333467899999999743
Q ss_pred ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHH
Q 026112 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES 231 (243)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~ 231 (243)
+......++.. +|++++|+|+..+.......++..+...++|+++|+||+|+... ++...++.+++.
T Consensus 86 ---------f~~~~~~~l~~---aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~-~~~~~~~~i~~~ 152 (687)
T PRK13351 86 ---------FTGEVERSLRV---LDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGA-DLFKVLEDIEER 152 (687)
T ss_pred ---------HHHHHHHHHHh---CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCC-CHHHHHHHHHHH
Confidence 11122233333 89999999998887777777888888889999999999999864 567777888888
Q ss_pred HhhCCCccc
Q 026112 232 LKANNSLVQ 240 (243)
Q Consensus 232 l~~~~~~~~ 240 (243)
+......++
T Consensus 153 l~~~~~~~~ 161 (687)
T PRK13351 153 FGKRPLPLQ 161 (687)
T ss_pred HCCCeEEEE
Confidence 777654443
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=124.80 Aligned_cols=140 Identities=21% Similarity=0.290 Sum_probs=94.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccc-ccccCCCCceEEEEEEE----------------------------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPGLTQTINFFK---------------------------------- 135 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~-~~vs~~~gtT~~~~~~~---------------------------------- 135 (243)
...+|+++|.-..|||||+.+|++.... .......|.|.+.-+..
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 4578999999999999999999985310 01111223333321110
Q ss_pred --eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC-CChhhHHHHHHHHhcCCc-EEEEee
Q 026112 136 --LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQTK-YQVVLT 211 (243)
Q Consensus 136 --~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-~~~~~~~~~~~l~~~~~p-~i~v~n 211 (243)
....+.++||||+. .++.........+|++++|+|+.++ ...+..+.+..+...+++ +++|+|
T Consensus 113 ~~~~~~i~~IDtPGH~-------------~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlN 179 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHD-------------ILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQN 179 (460)
T ss_pred ccccceEeeeeCCCHH-------------HHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEe
Confidence 02368999999962 3444444555569999999999875 566666777777777764 889999
Q ss_pred cCCCCChHHHHHHHHHHHHHHhh---CCCccccCC
Q 026112 212 KTDTVFPIDVARRAMQIEESLKA---NNSLVQPVV 243 (243)
Q Consensus 212 K~D~~~~~~~~~~~~~l~~~l~~---~~~~~~pi~ 243 (243)
|+|+.+.....+..+.+++.+.. ...+++|||
T Consensus 180 KiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVS 214 (460)
T PTZ00327 180 KIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPIS 214 (460)
T ss_pred cccccCHHHHHHHHHHHHHHHHhhccCCCeEEEee
Confidence 99999877777777777776654 344566664
|
|
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.1e-14 Score=116.92 Aligned_cols=108 Identities=13% Similarity=0.167 Sum_probs=68.5
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
+|+++|.+|+|||||++++++... ...+.+|+.+.. .+.. + ..+.+|||+|... +..+...+
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f---~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~----------~~~~~~~~ 68 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRF---EEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHP----------FPAMRRLS 68 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC---CCCCCCChhHhEEEEEEECCEEEEEEEEECCCChh----------hhHHHHHH
Confidence 799999999999999999987632 223444443322 2222 2 4678999999642 11222222
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh------------cCCcEEEEeecCCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------------SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~------------~~~p~i~v~nK~D~~~ 217 (243)
+. .+|++++|+|.+...+... ..+++.+.. .+.|+++|+||+|+..
T Consensus 69 ~~---~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 69 IL---TGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred hc---cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 22 3899999999876422222 233333321 2589999999999975
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-13 Score=108.45 Aligned_cols=113 Identities=17% Similarity=0.066 Sum_probs=70.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEE-E--EEEE-eC--CcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I--NFFK-LG--TKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~-~--~~~~-~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
+.++|+++|.+|+|||||++++++... . +..+.+|+.. . .... .+ ..+.++||+|.... ..+
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f-~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~----------~~~ 70 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSF-S-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVA----------ILL 70 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCC-C-cccCCCccCcceEEEEEEECCeEEEEEEEecCCcccc----------ccc
Confidence 467999999999999999999998732 1 1344444322 1 1111 23 35778999996431 112
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH-hcCCcEEEEeecCCCCCh
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~-~~~~p~i~v~nK~D~~~~ 218 (243)
...++. .+|++++|+|++++.+... ..+++.+. ..+.|+++|+||+|+...
T Consensus 71 ~~~~~~---~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 123 (169)
T cd01892 71 NDAELA---ACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQ 123 (169)
T ss_pred chhhhh---cCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccccc
Confidence 222332 3999999999876421111 13333332 236899999999999654
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.4e-14 Score=124.34 Aligned_cols=88 Identities=23% Similarity=0.274 Sum_probs=67.7
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe--------------------CCcEEEEeCCCCC
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYG 149 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~--------------------~~~~~liDTpG~~ 149 (243)
....+|+|+|.||+|||||+|+|++. . ..++++||||++++.... +..+.++||||+.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~-~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQ-Q-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcC-c-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 45679999999999999999999887 4 789999999998765432 2248999999987
Q ss_pred CCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCC
Q 026112 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (243)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~ 185 (243)
...... ..+..+++...+.+|++++|+|+.
T Consensus 97 ~ga~~g------~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 97 KGASEG------EGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCcch------hHHHHHHHHHHHHCCEEEEEEeCC
Confidence 543221 224445566666699999999974
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-13 Score=127.60 Aligned_cols=129 Identities=19% Similarity=0.202 Sum_probs=83.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccc-------ccc------CCCCceEEEE---EEE---e--CCcEEEEeCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-------RTS------DKPGLTQTIN---FFK---L--GTKLCLVDLPGYG 149 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~-------~vs------~~~gtT~~~~---~~~---~--~~~~~liDTpG~~ 149 (243)
...+|+++|..++|||||+++|+...... .+. ...|.|.... +.+ . +..+.+|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 35699999999999999999998742110 011 1234444322 111 1 4568999999985
Q ss_pred CCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHH
Q 026112 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (243)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~ 229 (243)
+. ...+.+++.. +|++++|+|++.+....+...+..+...+.|+++|+||+|+.... .....+.+.
T Consensus 86 dF----------~~~v~~sl~~---aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~-~~~v~~ei~ 151 (600)
T PRK05433 86 DF----------SYEVSRSLAA---CEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAAD-PERVKQEIE 151 (600)
T ss_pred HH----------HHHHHHHHHH---CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCccc-HHHHHHHHH
Confidence 41 1223333333 899999999998877777666666666789999999999986432 223334444
Q ss_pred HHHh
Q 026112 230 ESLK 233 (243)
Q Consensus 230 ~~l~ 233 (243)
+.++
T Consensus 152 ~~lg 155 (600)
T PRK05433 152 DVIG 155 (600)
T ss_pred HHhC
Confidence 4443
|
|
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-13 Score=108.80 Aligned_cols=109 Identities=15% Similarity=0.001 Sum_probs=69.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE-----EEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~-----~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||+.+++... ....+..|..+. ........+.+|||||... +..+...
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 68 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED----------YDRLRPL 68 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC---CCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchh----------hhhhhhh
Confidence 489999999999999999998762 122233332221 1111124688999999532 1222233
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhH--HHHHHHHhc--CCcEEEEeecCCCCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVF 217 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~~--~~p~i~v~nK~D~~~ 217 (243)
++. .+|++++|+|.+...+.... .++..+... +.|+++|.||+|+..
T Consensus 69 ~~~---~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~ 119 (174)
T cd01871 69 SYP---QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 119 (174)
T ss_pred hcC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhcc
Confidence 333 48999999998765333332 344444332 589999999999964
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-13 Score=113.05 Aligned_cols=111 Identities=23% Similarity=0.265 Sum_probs=69.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe--C--CcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL--G--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~--~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
++|+++|.+|+|||||+|++++.. ..... .+.++.+... ... + ..+.+|||||... +..+..
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~-~~~~~-~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~----------~~~~~~ 70 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGR-FAEVS-DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER----------FRSITR 70 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-CCCCC-CceeceEEEEEEEEECCCCEEEEEEEeCCcchh----------HHHHHH
Confidence 589999999999999999999873 22221 1222222211 111 2 3578999999532 233334
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
.++.. +|++++|+|.++..+... ..++..+.. ...|+++|.||+|+...
T Consensus 71 ~~~~~---~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~ 124 (211)
T cd04111 71 SYYRN---SVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQ 124 (211)
T ss_pred HHhcC---CcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccc
Confidence 44443 899999999876422222 233333322 24678999999999753
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.9e-14 Score=111.16 Aligned_cols=111 Identities=15% Similarity=0.129 Sum_probs=71.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEE-----EEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~-----~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
...+|+++|.+|+|||||++++..... ...+.+|..+ +........+.+|||+|... +..+.
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f---~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~----------~~~~~ 70 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCF---PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY----------YDNVR 70 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC---CCccCCceeeeeEEEEEECCEEEEEEEEECCCchh----------hHhhh
Confidence 456899999999999999999998732 2223222221 11111234688999999532 22333
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHhc--CCcEEEEeecCCCCC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVF 217 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~D~~~ 217 (243)
..++. .+|++++|+|.+...+... ..+++.+... ..|+++|.||+|+..
T Consensus 71 ~~~~~---~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~ 123 (182)
T cd04172 71 PLSYP---DSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 123 (182)
T ss_pred hhhcC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhc
Confidence 33433 3899999999876533333 2455555432 589999999999854
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.9e-13 Score=109.84 Aligned_cols=113 Identities=18% Similarity=0.141 Sum_probs=72.2
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe--------CCcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------GTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~--------~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
.+|+++|.+|+|||||++.+++........+..|.+........ ...+.+|||+|... +..+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~----------~~~l 70 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES----------VKST 70 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh----------HHHH
Confidence 37999999999999999999987321222222222222222111 23588999999632 2334
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----------------------cCCcEEEEeecCCCCCh
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----------------------SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----------------------~~~p~i~v~nK~D~~~~ 218 (243)
...|+.. +|++++|+|.+...+... ..|+..+.. ..+|+++|.||+|+.+.
T Consensus 71 ~~~~yr~---ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 71 RAVFYNQ---VNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred HHHHhCc---CCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 4445544 899999999876533332 244444432 25799999999999764
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-13 Score=107.99 Aligned_cols=110 Identities=14% Similarity=0.023 Sum_probs=68.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|++|+|||||++++++.. ....+.++..+.. .... ...+.+|||||..... .....
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~ 67 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDA---FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD----------RLRPL 67 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCccccc----------ccccc
Confidence 379999999999999999999873 2233333333221 1112 2347799999964311 11111
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHh--cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~p~i~v~nK~D~~~~ 218 (243)
+ ...+|++++|+|....-+... ..++..+.. .+.|+++|+||+|+...
T Consensus 68 ~---~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~ 119 (174)
T cd04135 68 S---YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDD 119 (174)
T ss_pred c---CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcC
Confidence 1 234899999999876422222 234444443 36899999999998653
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.5e-14 Score=109.34 Aligned_cols=66 Identities=24% Similarity=0.427 Sum_probs=45.4
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhH-HHHHHHHhcCCcEEEEeecC
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMERSQTKYQVVLTKT 213 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~-~~~~~l~~~~~p~i~v~nK~ 213 (243)
.+.|+||||+.+..... ..+...|+. .+|++++|+++...+...+. .+.+.+......+++|+||+
T Consensus 102 ~~~lvDtPG~~~~~~~~------~~~~~~~~~---~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEH------TEITEEYLP---KADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTT------SHHHHHHHS---TTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhh------HHHHHHhhc---cCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 79999999996632222 134555553 39999999999887665554 44445555667799999995
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=109.68 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=70.3
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||++++.+... ...+.+|..+.. ... ....+.+|||||... +..+...
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f---~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~----------~~~~~~~ 68 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY---PETYVPTVFENYTASFEIDEQRIELSLWDTSGSPY----------YDNVRPL 68 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC---CCCcCCceEEEEEEEEEECCEEEEEEEEECCCchh----------hhhcchh
Confidence 4799999999999999999998732 223333322211 111 134688999999532 1222223
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHhc--CCcEEEEeecCCCCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVF 217 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~D~~~ 217 (243)
++. .+|++++|+|.+...+... ..++..+... ..|+++|.||+|+..
T Consensus 69 ~~~---~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~ 119 (178)
T cd04131 69 CYP---DSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRT 119 (178)
T ss_pred hcC---CCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhc
Confidence 333 4899999999876544333 2455555432 689999999999864
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-13 Score=111.84 Aligned_cols=111 Identities=16% Similarity=0.129 Sum_probs=72.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceE-----EEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-----TINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~-----~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
...+|+++|.+|+|||||++.+++... ...+.+|.. .+........+.+|||+|... +..+.
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F---~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~----------~~~~~ 78 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTAGLETEEQRVELSLWDTSGSPY----------YDNVR 78 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCC---CCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchh----------hHHHH
Confidence 346899999999999999999987632 222222221 111111235688999999522 23334
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHhc--CCcEEEEeecCCCCC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVF 217 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~D~~~ 217 (243)
..|+.. +|++++|+|.+...+... ..|+..+... ..|+++|.||+|+..
T Consensus 79 ~~~~~~---ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~ 131 (232)
T cd04174 79 PLCYSD---SDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRT 131 (232)
T ss_pred HHHcCC---CcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 444443 999999999886543332 2455555432 579999999999853
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.3e-13 Score=120.55 Aligned_cols=113 Identities=19% Similarity=0.307 Sum_probs=93.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe------CCcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~------~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
+.|.|.++|+--.|||||+..+.+.. ......-|.|+++-.+.. ...++++||||+. .|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~--Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHe-------------AF 68 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTN--VAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHE-------------AF 68 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCc--cccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHH-------------HH
Confidence 56899999999999999999999883 445556678988754432 2689999999973 34
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
...-.+...-+|++++|+|+.+++.++..+.++.++..++|+++++||+|+.+.
T Consensus 69 t~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~ 122 (509)
T COG0532 69 TAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEA 122 (509)
T ss_pred HHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCC
Confidence 444445555689999999999999999999999999999999999999999854
|
|
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.6e-13 Score=107.87 Aligned_cols=148 Identities=21% Similarity=0.299 Sum_probs=102.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccccc-------ccCCCCceEEE------EEEEeCCcEEEEeCCCCCCCccchHH-
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR-------TSDKPGLTQTI------NFFKLGTKLCLVDLPGYGFAYAKEEV- 157 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~-------vs~~~gtT~~~------~~~~~~~~~~liDTpG~~~~~~~~~~- 157 (243)
.++|.++|.+|.|||||+|.|+... ... .-+++.||.-- ....+.-++.++|||||++....+..
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~-v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSH-VSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHH-HhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 4799999999999999999999862 221 11233333211 11112347889999999986544322
Q ss_pred ---HHHHHHHHHHHHhcc---------c--CccEEEEEEeCC-CCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHH
Q 026112 158 ---KDAWEELVKEYVSTR---------V--SLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVA 222 (243)
Q Consensus 158 ---~~~~~~~~~~~~~~~---------~--~~d~v~~vvd~~-~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~ 222 (243)
...+.+-..+|++.. . ..++++|.+..+ +.+.+.|.++++.|... +.++-|+-|+|.+.-++..
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-vNvvPVIakaDtlTleEr~ 203 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-VNVVPVIAKADTLTLEERS 203 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-heeeeeEeecccccHHHHH
Confidence 111122222333211 1 257788888754 46888899888888764 7899999999999999999
Q ss_pred HHHHHHHHHHhhCCCcccc
Q 026112 223 RRAMQIEESLKANNSLVQP 241 (243)
Q Consensus 223 ~~~~~l~~~l~~~~~~~~p 241 (243)
.....+++.+..++..++|
T Consensus 204 ~FkqrI~~el~~~~i~vYP 222 (336)
T KOG1547|consen 204 AFKQRIRKELEKHGIDVYP 222 (336)
T ss_pred HHHHHHHHHHHhcCccccc
Confidence 9999999999999998887
|
|
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-13 Score=111.63 Aligned_cols=109 Identities=17% Similarity=0.183 Sum_probs=68.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE-eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
.+|+++|.+|+|||||+++++... ... ..+.+..+..... ....+.+|||||... +..+...|+.
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~-f~~--~~~Tig~~~~~~~~~~~~l~iwDt~G~e~----------~~~l~~~~~~- 66 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERR-FKD--TVSTVGGAFYLKQWGPYNISIWDTAGREQ----------FHGLGSMYCR- 66 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC-CCC--CCCccceEEEEEEeeEEEEEEEeCCCccc----------chhhHHHHhc-
Confidence 378999999999999999999873 221 1221112221111 245689999999643 1223334443
Q ss_pred ccCccEEEEEEeCCCCCChhhH--HHHHHHHh--cCCcEEEEeecCCCCC
Q 026112 172 RVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~--~~~p~i~v~nK~D~~~ 217 (243)
.+|++++|+|.+...+.... .+...... .+.|+++|.||+|+..
T Consensus 67 --~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 67 --GAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred --cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 39999999998865333322 22222222 3579999999999975
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.4e-13 Score=129.30 Aligned_cols=129 Identities=14% Similarity=0.212 Sum_probs=90.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceE---------------EE---EEEEe----------CCcEEE
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---------------TI---NFFKL----------GTKLCL 142 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~---------------~~---~~~~~----------~~~~~l 142 (243)
...+|+++|+.++|||||+++|+.... .......|+|+ +. .+... +..+.+
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g-~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAG-IISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcC-CcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 355999999999999999999997532 11112223222 21 11111 345899
Q ss_pred EeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC------
Q 026112 143 VDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV------ 216 (243)
Q Consensus 143 iDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~------ 216 (243)
+||||+.+ +..........+|++++|+|+..++...+..+++.+...++|+++++||+|+.
T Consensus 97 iDtPG~~~-------------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~ 163 (836)
T PTZ00416 97 IDSPGHVD-------------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQL 163 (836)
T ss_pred EcCCCHHh-------------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCC
Confidence 99999853 22222333345999999999999998889899999988899999999999997
Q ss_pred Ch----HHHHHHHHHHHHHHh
Q 026112 217 FP----IDVARRAMQIEESLK 233 (243)
Q Consensus 217 ~~----~~~~~~~~~l~~~l~ 233 (243)
++ ..+.+.++.++..+.
T Consensus 164 ~~~~~~~~~~~ii~~in~~l~ 184 (836)
T PTZ00416 164 DPEEIYQNFVKTIENVNVIIA 184 (836)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 22 345566666666555
|
|
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.3e-13 Score=114.88 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=75.6
Q ss_pred CCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe----------------CCcEEEEeCCCCCCC
Q 026112 88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----------------GTKLCLVDLPGYGFA 151 (243)
Q Consensus 88 ~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~----------------~~~~~liDTpG~~~~ 151 (243)
+.....+|+++|..|+|||||++.+.+........+..|.+........ ...+.||||+|...
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr- 95 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER- 95 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh-
Confidence 3445679999999999999999999987322222233333322221111 13488999999532
Q ss_pred ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---------------CCcEEEEeecCCC
Q 026112 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---------------QTKYQVVLTKTDT 215 (243)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---------------~~p~i~v~nK~D~ 215 (243)
+..+...|+.. ++++++|+|.+...+... ..+++.+... .+|+++|.||+|+
T Consensus 96 ---------frsL~~~yyr~---AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL 163 (334)
T PLN00023 96 ---------YKDCRSLFYSQ---INGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADI 163 (334)
T ss_pred ---------hhhhhHHhccC---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccc
Confidence 23344445444 999999999876422222 2455555432 3789999999999
Q ss_pred CCh
Q 026112 216 VFP 218 (243)
Q Consensus 216 ~~~ 218 (243)
...
T Consensus 164 ~~~ 166 (334)
T PLN00023 164 APK 166 (334)
T ss_pred ccc
Confidence 754
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.8e-14 Score=118.17 Aligned_cols=109 Identities=20% Similarity=0.188 Sum_probs=80.4
Q ss_pred CCCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE---EEEeCCcEEEEeCCCCCCCccchHHHHHHH
Q 026112 86 SFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWE 162 (243)
Q Consensus 86 ~~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~ 162 (243)
...+.+..+|+++|+|++|||||+|+|++.. ..++++++||..+. +.+.|..++++|+||+.+......
T Consensus 57 ~V~KsGda~v~lVGfPsvGKStLL~~LTnt~--seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~------ 128 (365)
T COG1163 57 AVKKSGDATVALVGFPSVGKSTLLNKLTNTK--SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGR------ 128 (365)
T ss_pred eEeccCCeEEEEEcCCCccHHHHHHHHhCCC--ccccccCceecccccceEeecCceEEEEcCcccccCcccCC------
Confidence 3455677899999999999999999999985 78999999998863 445588999999999876533221
Q ss_pred HHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcC
Q 026112 163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ 203 (243)
Q Consensus 163 ~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~ 203 (243)
......++..+.||+|++|+|....... -..+.+.+...+
T Consensus 129 grG~~vlsv~R~ADlIiiVld~~~~~~~-~~~i~~ELe~~G 168 (365)
T COG1163 129 GRGRQVLSVARNADLIIIVLDVFEDPHH-RDIIERELEDVG 168 (365)
T ss_pred CCcceeeeeeccCCEEEEEEecCCChhH-HHHHHHHHHhcC
Confidence 1123345556679999999998865332 224566666554
|
|
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-13 Score=107.07 Aligned_cols=111 Identities=11% Similarity=0.030 Sum_probs=68.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE---EEEE--eCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~---~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|++|||||||++++.+... ...+.++..+. .+.. ....+.+|||||... +..+...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 68 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF---PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED----------YDRLRPL 68 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCccccceEEEEEECCEEEEEEEEeCCCchh----------hhhcccc
Confidence 4899999999999999999998732 12222222211 1111 134678999999632 1111111
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHh--cCCcEEEEeecCCCCChH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~p~i~v~nK~D~~~~~ 219 (243)
+ ...+|++++|+|.....+... ..++..+.. .+.|+++|+||+|+....
T Consensus 69 ~---~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 121 (175)
T cd01870 69 S---YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 121 (175)
T ss_pred c---cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccCh
Confidence 2 234899999999775322122 224444443 368999999999987543
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-13 Score=108.68 Aligned_cols=134 Identities=17% Similarity=0.108 Sum_probs=89.6
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE-------EEeCCcEEEEeCCCCCCCccchHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF-------FKLGTKLCLVDLPGYGFAYAKEEVKDAWE 162 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~-------~~~~~~~~liDTpG~~~~~~~~~~~~~~~ 162 (243)
...++|+++|.+|+|||+++-++.... ....+. +|.-+.+ ......+++|||+|.. .+.
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~---f~~~~~-sTiGIDFk~kti~l~g~~i~lQiWDtaGQe----------rf~ 75 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDS---FNTSFI-STIGIDFKIKTIELDGKKIKLQIWDTAGQE----------RFR 75 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhcc---CcCCcc-ceEEEEEEEEEEEeCCeEEEEEEEEcccch----------hHH
Confidence 456899999999999999999998873 111111 2222222 1124578899999953 356
Q ss_pred HHHHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCc
Q 026112 163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 238 (243)
Q Consensus 163 ~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~ 238 (243)
.+...|++. |+++++|+|.+...+... ..|++.+..+ ++|.++|.||+|+.....+ ..+.-++...+++..
T Consensus 76 ti~~sYyrg---A~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V--~~e~ge~lA~e~G~~ 150 (207)
T KOG0078|consen 76 TITTAYYRG---AMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQV--SKERGEALAREYGIK 150 (207)
T ss_pred HHHHHHHhh---cCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccc--cHHHHHHHHHHhCCe
Confidence 777888877 999999999876533333 3466666544 6899999999999875433 223344444555555
Q ss_pred cccC
Q 026112 239 VQPV 242 (243)
Q Consensus 239 ~~pi 242 (243)
++.+
T Consensus 151 F~Et 154 (207)
T KOG0078|consen 151 FFET 154 (207)
T ss_pred EEEc
Confidence 5443
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.1e-14 Score=118.39 Aligned_cols=83 Identities=27% Similarity=0.351 Sum_probs=63.2
Q ss_pred EEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---C-----------------CcEEEEeCCCCCCCccc
Q 026112 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---G-----------------TKLCLVDLPGYGFAYAK 154 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~-----------------~~~~liDTpG~~~~~~~ 154 (243)
|+++|.||+|||||+|+|++. + ..++++||||.+...... + ..+.++||||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~-~-~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKA-G-AEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCC-C-CccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 589999999999999999998 4 488999999988755321 1 14899999998754322
Q ss_pred hHHHHHHHHHHHHHHhcccCccEEEEEEeCC
Q 026112 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (243)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~ 185 (243)
. ..+..+++...+.+|++++|+|+.
T Consensus 79 ~------~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 79 G------EGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred h------hHHHHHHHHHHHhCCEEEEEEeCc
Confidence 2 234455666666799999999974
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.6e-13 Score=107.08 Aligned_cols=110 Identities=17% Similarity=0.035 Sum_probs=72.2
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE---EEEE--eCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~---~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||+.++..... ...+..|..+. .... ....+.+|||+|... +..+...
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f---~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~----------~~~~~~~ 68 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF---PTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQED----------YNRLRPL 68 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC---CCCCCCcceeeeEEEEEECCEEEEEEEEECCCCcc----------ccccchh
Confidence 5899999999999999999997632 22222232221 1111 135688999999643 2223333
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhH--HHHHHHHh--cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~--~~~p~i~v~nK~D~~~~ 218 (243)
+++ .++++++|+|.++..+.... .++..+.. .+.|+++|.||+|+.+.
T Consensus 69 ~~~---~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~ 120 (176)
T cd04133 69 SYR---GADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDD 120 (176)
T ss_pred hcC---CCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccC
Confidence 443 38999999998765444432 45555543 26899999999999653
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-13 Score=102.27 Aligned_cols=108 Identities=19% Similarity=0.205 Sum_probs=63.8
Q ss_pred EEEEecCCCCchhHHHHHHhccccc--ccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGV--VRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~--~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
+|+++|.+|+|||||+++|++.... .......+.+........ ...+.++|++|...... .+..+..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~~~~~-- 72 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYS------QHQFFLK-- 72 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHC------TSHHHHH--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecc------cccchhh--
Confidence 6899999999999999999998421 112233333333322222 23488999999643111 0111222
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh-----cCCcEEEEeecCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTD 214 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-----~~~p~i~v~nK~D 214 (243)
.+|++++|+|.++..+-.. ..++.++.. ...|+++|.||.|
T Consensus 73 -----~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 73 -----KADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp -----HSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred -----cCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 2899999999886422222 123333332 2589999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.4e-14 Score=110.01 Aligned_cols=133 Identities=17% Similarity=0.139 Sum_probs=87.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccccc---ccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR---TSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~---vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|+|||||+-++........ +-...+.|..+.......++.||||+|... ++.+...|
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQER----------y~slapMY 74 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQER----------YHSLAPMY 74 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCccc----------ccccccce
Confidence 46899999999999999988877632221 222233455554443456788999999632 46677778
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhcCCc---EEEEeecCCCCChHHHHHHHHHHHHHHhhCCCcc
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTK---YQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV 239 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~~~p---~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~ 239 (243)
++. ++.+|+|+|.++.-+... ..+++.|+...-| +.+|.||+|+....++ ..++...+-+..+...
T Consensus 75 yRg---A~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V--~~~ea~~yAe~~gll~ 144 (200)
T KOG0092|consen 75 YRG---ANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREV--EFEEAQAYAESQGLLF 144 (200)
T ss_pred ecC---CcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccc--cHHHHHHHHHhcCCEE
Confidence 877 899999999886422222 4667777655334 6679999999874432 2234444444444443
|
|
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.7e-13 Score=108.33 Aligned_cols=110 Identities=14% Similarity=0.012 Sum_probs=70.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE-E-EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-N-FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~-~-~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||++++..... ...+..|..+. . .... ...+.+|||||... +..+...
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~----------~~~l~~~ 70 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF---PKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEE----------YDRLRTL 70 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC---CcCCCCceEeeeEEEEEECCEEEEEEEEECCCchh----------hhhhhhh
Confidence 6899999999999999999987631 12222222221 1 0111 24688999999532 2333334
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhH--HHHHHHHh--cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~--~~~p~i~v~nK~D~~~~ 218 (243)
|+.. +|++++|+|.+...+.... .+...+.. .+.|+++|.||+|+...
T Consensus 71 ~~~~---a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~ 122 (191)
T cd01875 71 SYPQ---TNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRND 122 (191)
T ss_pred hccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcC
Confidence 4433 8999999998765332222 24443432 36899999999999653
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.2e-13 Score=117.22 Aligned_cols=124 Identities=18% Similarity=0.235 Sum_probs=87.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc---ccc-----------cccCCCC---ceEEEEEEE-------e----CCcEEE
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW---GVV-----------RTSDKPG---LTQTINFFK-------L----GTKLCL 142 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~---~~~-----------~vs~~~g---tT~~~~~~~-------~----~~~~~l 142 (243)
+...|+++|+.|+|||||+|++.+.- ... .+++.+| +|.++.+.+ . ..++.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 55789999999999999999999861 123 6788999 888887733 1 268999
Q ss_pred EeCCCCCCCccc--hHHHH------HH-----------HHHHHHHHhcccCccEEEEEE-eCC------CCCChhhHHHH
Q 026112 143 VDLPGYGFAYAK--EEVKD------AW-----------EELVKEYVSTRVSLKRVCLLI-DTK------WGVKPRDHELI 196 (243)
Q Consensus 143 iDTpG~~~~~~~--~~~~~------~~-----------~~~~~~~~~~~~~~d~v~~vv-d~~------~~~~~~~~~~~ 196 (243)
+||+||...... .+..+ .| +--.++.+. ..+++.++|. |.+ ......+..++
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~--dhstIgivVtTDgsi~dI~Re~y~~aEe~~i 173 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQ--EHSTIGVVVTTDGTITDIPREDYVEAEERVI 173 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHH--hcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence 999998754211 11111 00 001222222 1388888888 875 34556678899
Q ss_pred HHHHhcCCcEEEEeecCCCC
Q 026112 197 SLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 197 ~~l~~~~~p~i~v~nK~D~~ 216 (243)
+.|+..++|+++|+||+|-.
T Consensus 174 ~eLk~~~kPfiivlN~~dp~ 193 (492)
T TIGR02836 174 EELKELNKPFIILLNSTHPY 193 (492)
T ss_pred HHHHhcCCCEEEEEECcCCC
Confidence 99999999999999999944
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.1e-13 Score=101.62 Aligned_cols=110 Identities=21% Similarity=0.109 Sum_probs=67.4
Q ss_pred EecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 97 ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
++|.+|+|||||+|+|++... . ......+..+.. ... .+..+.++||||.... ......+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------~~~~~~~--- 65 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEF-V-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERF----------RSLRRLY--- 65 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCc-C-CcccccchhheeeEEEEECCEEEEEEEEecCChHHH----------HhHHHHH---
Confidence 579999999999999999731 1 111111111111 111 2567999999997431 1111222
Q ss_pred ccCccEEEEEEeCCCCCChhhHH-----HHHHHHhcCCcEEEEeecCCCCChHHH
Q 026112 172 RVSLKRVCLLIDTKWGVKPRDHE-----LISLMERSQTKYQVVLTKTDTVFPIDV 221 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~~~-----~~~~l~~~~~p~i~v~nK~D~~~~~~~ 221 (243)
...+|++++|+|+..+....... ........+.|+++|+||+|+......
T Consensus 66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~ 120 (157)
T cd00882 66 YRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVV 120 (157)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccch
Confidence 23489999999988753333322 112233457999999999999866443
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.7e-13 Score=100.88 Aligned_cols=112 Identities=20% Similarity=0.263 Sum_probs=77.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
..+|.++|..||||||++++|.+. ....+++..|....... ..+..+.+||.-|... .+..| +.|+..
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~-~~~~i~pt~gf~Iktl~-~~~~~L~iwDvGGq~~------lr~~W----~nYfes 83 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGE-DTDTISPTLGFQIKTLE-YKGYTLNIWDVGGQKT------LRSYW----KNYFES 83 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCC-CccccCCccceeeEEEE-ecceEEEEEEcCCcch------hHHHH----HHhhhc
Confidence 579999999999999999999998 44556665554333322 2377899999999543 33444 444444
Q ss_pred ccCccEEEEEEeCCCCCChhh--HHHHHHH---HhcCCcEEEEeecCCCCCh
Q 026112 172 RVSLKRVCLLIDTKWGVKPRD--HELISLM---ERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~--~~~~~~l---~~~~~p~i~v~nK~D~~~~ 218 (243)
.|++++|+|+++...-++ .++-+.+ +-.+.|++++.||.|+...
T Consensus 84 ---tdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~ 132 (185)
T KOG0073|consen 84 ---TDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA 132 (185)
T ss_pred ---cCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc
Confidence 899999999976422221 2222222 2347899999999999843
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-12 Score=111.26 Aligned_cols=149 Identities=24% Similarity=0.327 Sum_probs=105.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccc---cCCCC----ceEEEEEEE-----e--CCcEEEEeCCCCCCCccchH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRT---SDKPG----LTQTINFFK-----L--GTKLCLVDLPGYGFAYAKEE 156 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~v---s~~~g----tT~~~~~~~-----~--~~~~~liDTpG~~~~~~~~~ 156 (243)
-.++|+++|.+|.|||||+|.|++.. .... .+..+ .|..+.... . ...+.++|||||++......
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~-l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTS-LVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhh-ccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 45799999999999999999999972 1111 01111 222222221 1 24688999999998643322
Q ss_pred ----HHHHHHHHHHHHHhccc-----------CccEEEEEEeC-CCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHH
Q 026112 157 ----VKDAWEELVKEYVSTRV-----------SLKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 157 ----~~~~~~~~~~~~~~~~~-----------~~d~v~~vvd~-~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~ 220 (243)
+-..+....+.|+.... ..|+++|.+.+ .+++.+.|.++++.+.. .+.+|-|+.|+|.+..++
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-~vNlIPVI~KaD~lT~~E 179 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-RVNLIPVIAKADTLTDDE 179 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-ccCeeeeeeccccCCHHH
Confidence 22223333334443211 26888888874 56799999998888876 489999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCccc-c
Q 026112 221 VARRAMQIEESLKANNSLVQ-P 241 (243)
Q Consensus 221 ~~~~~~~l~~~l~~~~~~~~-p 241 (243)
+......+++.+..++..+| |
T Consensus 180 l~~~K~~I~~~i~~~nI~vf~p 201 (373)
T COG5019 180 LAEFKERIREDLEQYNIPVFDP 201 (373)
T ss_pred HHHHHHHHHHHHHHhCCceeCC
Confidence 99999999999999998887 6
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=126.61 Aligned_cols=112 Identities=15% Similarity=0.200 Sum_probs=81.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCc---------------eEEE---EEEE----------------e
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL---------------TQTI---NFFK----------------L 136 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gt---------------T~~~---~~~~----------------~ 136 (243)
...+|+++|+.++|||||+++|+...+ .......|. |... .+.+ .
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g-~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG-IIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcC-CcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 467999999999999999999987632 111122222 2221 1111 1
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
+..+.++||||+.+ +..........+|++++|+|+..++......+++.+...++|+++++||+|+.
T Consensus 97 ~~~inliDtPGh~d-------------F~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVD-------------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHH-------------HHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 45678999999743 22222333344999999999999998888899999999999999999999998
|
|
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-13 Score=105.13 Aligned_cols=135 Identities=15% Similarity=0.107 Sum_probs=88.2
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccccc---ccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV---VRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~---~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
....+|.++|.+|+|||||+|.+...... ..+-...+.|+++.+..--..+.+|||+|.. .++.+.-
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQE----------RFqsLg~ 76 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQE----------RFQSLGV 76 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHH----------Hhhhccc
Confidence 45679999999999999999999986311 1122234567777665334568899999942 2444444
Q ss_pred HHHhcccCccEEEEEEeCCCC--CChhhHHHHHHHHhc------CCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMERS------QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS 237 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~~------~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~ 237 (243)
.+++. +|++++|+|.... +...+..--+++... .-|+|++.||+|+.............++-+...+.
T Consensus 77 aFYRg---aDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gn 152 (210)
T KOG0394|consen 77 AFYRG---ADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGN 152 (210)
T ss_pred ceecC---CceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCC
Confidence 55555 9999999987653 222222222333322 36899999999998755444455556666666554
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=118.27 Aligned_cols=133 Identities=20% Similarity=0.246 Sum_probs=91.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccc-----------------------------cccCCCCceEEEEEEE---eCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-----------------------------RTSDKPGLTQTINFFK---LGT 138 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~-----------------------------~vs~~~gtT~~~~~~~---~~~ 138 (243)
+..+|+++|..++|||||+.+|+...... ......|.|.++.... .+.
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 45689999999999999999887432100 0011335676665443 256
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC-CC------hhhHHHHHHHHhcCCc-EEEEe
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VK------PRDHELISLMERSQTK-YQVVL 210 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-~~------~~~~~~~~~l~~~~~p-~i~v~ 210 (243)
.+.++||||+. .+..........+|++++|+|+..+ +. .+..+.+..+...++| +++++
T Consensus 86 ~i~liDtPGh~-------------df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~v 152 (447)
T PLN00043 86 YCTVIDAPGHR-------------DFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCC 152 (447)
T ss_pred EEEEEECCCHH-------------HHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEE
Confidence 89999999973 2444444444559999999999875 21 3556667777788885 78899
Q ss_pred ecCCCCC----hHHHHHHHHHHHHHHhhCC
Q 026112 211 TKTDTVF----PIDVARRAMQIEESLKANN 236 (243)
Q Consensus 211 nK~D~~~----~~~~~~~~~~l~~~l~~~~ 236 (243)
||+|+.. ...+.+..+.++..+...+
T Consensus 153 NKmD~~~~~~~~~~~~~i~~ei~~~l~~~g 182 (447)
T PLN00043 153 NKMDATTPKYSKARYDEIVKEVSSYLKKVG 182 (447)
T ss_pred EcccCCchhhhHHHHHHHHHHHHHHHHHcC
Confidence 9999863 2345666777888777665
|
|
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-13 Score=108.62 Aligned_cols=115 Identities=19% Similarity=0.272 Sum_probs=74.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
...+|+++|.+||||||+++.|... ....+.+..|..... +...+..+.++|.+|-.. ....|. .|+.
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~-~~~~~~pT~g~~~~~-i~~~~~~~~~~d~gG~~~------~~~~w~----~y~~ 80 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNG-EISETIPTIGFNIEE-IKYKGYSLTIWDLGGQES------FRPLWK----SYFQ 80 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSS-SEEEEEEESSEEEEE-EEETTEEEEEEEESSSGG------GGGGGG----GGHT
T ss_pred cEEEEEEECCCccchHHHHHHhhhc-cccccCcccccccce-eeeCcEEEEEEecccccc------ccccce----eecc
Confidence 4579999999999999999999876 323333333332221 122467899999999532 112233 3333
Q ss_pred cccCccEEEEEEeCCCCC--ChhhHHHHHHHHh---cCCcEEEEeecCCCCChHH
Q 026112 171 TRVSLKRVCLLIDTKWGV--KPRDHELISLMER---SQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~--~~~~~~~~~~l~~---~~~p~i~v~nK~D~~~~~~ 220 (243)
.+|+++||+|+++.. .+....+.+.+.. .+.|+++++||+|+.....
T Consensus 81 ---~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~ 132 (175)
T PF00025_consen 81 ---NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMS 132 (175)
T ss_dssp ---TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSST
T ss_pred ---ccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcch
Confidence 389999999988531 1222233343432 3689999999999876433
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-12 Score=101.04 Aligned_cols=124 Identities=17% Similarity=0.188 Sum_probs=88.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccc------cCCC---CceEEEEEEE----eCCcEEEEeCCCCCCCccchHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRT------SDKP---GLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEV 157 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~v------s~~~---gtT~~~~~~~----~~~~~~liDTpG~~~~~~~~~~ 157 (243)
...+|+++|+.++||||++.+++... ...+ .... .||..+.+.. .+..+.++||||+..
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~-~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~R------- 80 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKP-LVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQER------- 80 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccc-cceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHH-------
Confidence 35699999999999999999999873 1111 1122 3666665543 247899999999632
Q ss_pred HHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcC-CcEEEEeecCCCCChHHHHHHHHHH
Q 026112 158 KDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDTVFPIDVARRAMQI 228 (243)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~-~p~i~v~nK~D~~~~~~~~~~~~~l 228 (243)
+.-+++-+.+. ++..++++|++.+......++++++.... +|+++++||.|+.+........+.+
T Consensus 81 ---F~fm~~~l~~g---a~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l 146 (187)
T COG2229 81 ---FKFMWEILSRG---AVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREAL 146 (187)
T ss_pred ---HHHHHHHHhCC---cceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHH
Confidence 23334333333 89999999999887776678888888777 9999999999999765444443333
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-13 Score=106.84 Aligned_cols=57 Identities=33% Similarity=0.588 Sum_probs=51.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~ 148 (243)
...+|+++|.||+|||||+|+|.+. ....+++++|+|++...+..+..+.++||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSK-KVCKVAPIPGETKVWQYITLMKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcC-CceeeCCCCCeeEeEEEEEcCCCEEEEECcCC
Confidence 3468899999999999999999998 56789999999999988887778999999995
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-12 Score=107.02 Aligned_cols=110 Identities=14% Similarity=0.120 Sum_probs=68.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEE-----EEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-----INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~-----~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||++++++... ...+.+|..+ +........+.+|||+|... +..+...
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f---~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~----------~~~l~~~ 68 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY---PGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSY----------YDNVRPL 68 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC---CCccCCccccceEEEEEECCEEEEEEEEeCCCcHH----------HHHHhHH
Confidence 4799999999999999999998632 2222222211 11111234688999999532 2222233
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHh--cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~p~i~v~nK~D~~~~ 218 (243)
++. .+|++++|+|.+...+... ..+...+.. .+.|+++|.||+|+...
T Consensus 69 ~~~---~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~ 120 (222)
T cd04173 69 AYP---DSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTD 120 (222)
T ss_pred hcc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccc
Confidence 333 3999999999876522222 123333322 36899999999999653
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.4e-13 Score=107.60 Aligned_cols=57 Identities=33% Similarity=0.545 Sum_probs=52.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~ 148 (243)
...+|+++|.||+|||||+|+|++. ....+++.||+|++.+.+..+..+.++||||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~-~~~~~~~~pg~T~~~~~~~~~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRS-RACNVGATPGVTKSMQEVHLDKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCc-ccceecCCCCeEcceEEEEeCCCEEEEECcCC
Confidence 4579999999999999999999998 56789999999999988888888999999995
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4e-12 Score=109.68 Aligned_cols=148 Identities=21% Similarity=0.300 Sum_probs=104.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccccc------ccCCCCceEEEEEEE-------eCCcEEEEeCCCCCCCccch--
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR------TSDKPGLTQTINFFK-------LGTKLCLVDLPGYGFAYAKE-- 155 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~------vs~~~gtT~~~~~~~-------~~~~~~liDTpG~~~~~~~~-- 155 (243)
-.+.+.++|.+|.|||||+|.|+... ... .+..+..|..+.... ....++++||||+++.....
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~-l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~ 98 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTD-LSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC 98 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhh-ccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence 45799999999999999999999872 111 111221232222211 12468899999999864332
Q ss_pred --HHHHHHHHHHHHHHhccc----------CccEEEEEEeC-CCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHH
Q 026112 156 --EVKDAWEELVKEYVSTRV----------SLKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVA 222 (243)
Q Consensus 156 --~~~~~~~~~~~~~~~~~~----------~~d~v~~vvd~-~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~ 222 (243)
.+.+.+..-.+.|+..-. ..|+++|.+.. .+++.+.|.+.++.+.. .+++|-|+.|+|.+.++++.
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPVI~KaD~lT~~El~ 177 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPVIAKADTLTKDELN 177 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-cccccceeeccccCCHHHHH
Confidence 222333334445554221 36888888875 45699999888887765 58999999999999999999
Q ss_pred HHHHHHHHHHhhCCCccc
Q 026112 223 RRAMQIEESLKANNSLVQ 240 (243)
Q Consensus 223 ~~~~~l~~~l~~~~~~~~ 240 (243)
..+..+++.+..++..+|
T Consensus 178 ~~K~~I~~~i~~~nI~vf 195 (366)
T KOG2655|consen 178 QFKKRIRQDIEEHNIKVF 195 (366)
T ss_pred HHHHHHHHHHHHcCccee
Confidence 999999999999988776
|
|
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-12 Score=102.53 Aligned_cols=105 Identities=15% Similarity=0.121 Sum_probs=64.7
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCC-ceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~g-tT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (243)
+|+++|.+|+|||||++.++.........+..+ .+..+........+.+|||+|... . .++.
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----------~----~~~~-- 64 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----------A----QFAS-- 64 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----------h----hHHh--
Confidence 799999999999999998876521111111111 111111111124588999999732 1 1222
Q ss_pred cCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCC
Q 026112 173 VSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTV 216 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~ 216 (243)
.+|++++|+|.+...+... ..++..+.. ...|+++|.||+|+.
T Consensus 65 -~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 65 -WVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS 112 (158)
T ss_pred -cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence 3899999999886533333 344555543 247999999999985
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-13 Score=120.64 Aligned_cols=138 Identities=18% Similarity=0.235 Sum_probs=91.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc----ccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~----~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
+..|+++|.+|+|||||+|+|++.. +...++..||||++...+..+..+.++||||+.... .+...+..-...
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~~~---~~~~~l~~~~l~ 230 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIINSH---QMAHYLDKKDLK 230 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCChh---HhhhhcCHHHHh
Confidence 3589999999999999999999853 235789999999999988877778999999997531 111111111112
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 232 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l 232 (243)
++........+.+.+|..+.+.......++++......+.+.++|.+........+..+.+++.+
T Consensus 231 ~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~~~ 295 (360)
T TIGR03597 231 YITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIHRTKLENADELYNKHL 295 (360)
T ss_pred hcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeEeechhhhHHHHHhhc
Confidence 33334457778888887664433343334444444566788888888775544444444445443
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.9e-12 Score=100.51 Aligned_cols=115 Identities=18% Similarity=0.174 Sum_probs=77.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE---EEEe--CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~---~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
..+|+++|..++||||||++++-...-......-| .|.. ++.. ...+.+|||+|. +.+..++.
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIG--iDFlskt~~l~d~~vrLQlWDTAGQ----------ERFrslip 89 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIG--IDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRSLIP 89 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhhcccccceee--eEEEEEEEEEcCcEEEEEEEecccH----------HHHhhhhh
Confidence 47999999999999999999987631111222111 1221 1112 457889999994 34677888
Q ss_pred HHHhcccCccEEEEEEeCCCCCChh-hHHHHHHHHhc----CCcEEEEeecCCCCChHHH
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS----QTKYQVVLTKTDTVFPIDV 221 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~~----~~p~i~v~nK~D~~~~~~~ 221 (243)
.|++. +.++++|+|.++..+.. ...|++.+... ++-+++|.||.||.+..+.
T Consensus 90 sY~Rd---s~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqv 146 (221)
T KOG0094|consen 90 SYIRD---SSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQV 146 (221)
T ss_pred hhccC---CeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhh
Confidence 88876 89999999987643322 23555555433 2558899999999988654
|
|
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.8e-12 Score=102.64 Aligned_cols=114 Identities=18% Similarity=0.105 Sum_probs=75.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe----CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.+|+++|.+|||||||+++|.+... .........+........ ...+.+|||+|..+ +..+...|
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~----------~~~~~~~y 74 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF-PEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEE----------YRSLRPEY 74 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC-cccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHH----------HHHHHHHH
Confidence 6999999999999999999999831 211111111222222222 23489999999632 33455555
Q ss_pred HhcccCccEEEEEEeCCC--CCChhhHHHHHHHHhc---CCcEEEEeecCCCCChHH
Q 026112 169 VSTRVSLKRVCLLIDTKW--GVKPRDHELISLMERS---QTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~--~~~~~~~~~~~~l~~~---~~p~i~v~nK~D~~~~~~ 220 (243)
... ++++++++|... ........+...+... ..|+++|.||+|+.....
T Consensus 75 ~~~---~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~ 128 (219)
T COG1100 75 YRG---ANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQS 128 (219)
T ss_pred hcC---CCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchh
Confidence 555 899999999764 2333335666666553 489999999999997653
|
|
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.9e-13 Score=106.63 Aligned_cols=113 Identities=21% Similarity=0.169 Sum_probs=80.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccC----CCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD----KPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~----~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
-.++|+++|.+|+|||-|+.+++..+. ..-+. ..+.|+.+....--.+..||||+|.. .++.+..
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF-~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQE----------RyrAitS 81 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEF-SLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQE----------RYRAITS 81 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhccccc-CcccccceeEEEEeeceeecCcEEEEeeecccchh----------hhccccc
Confidence 357899999999999999999998742 22111 11233333333234567899999952 3456677
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVF 217 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~ 217 (243)
.|++. +.+.++|+|.+...+.+. ..|++.|+.+ ++++++|.||+||..
T Consensus 82 aYYrg---AvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 82 AYYRG---AVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred hhhcc---cceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 77777 899999999876544433 4677777654 578999999999975
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.1e-12 Score=109.77 Aligned_cols=129 Identities=20% Similarity=0.291 Sum_probs=89.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccc-----------------------------cccccCCCCceEEEEEEE---eCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-----------------------------VVRTSDKPGLTQTINFFK---LGT 138 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~-----------------------------~~~vs~~~gtT~~~~~~~---~~~ 138 (243)
...+++++|+..+|||||+-.|+-... ....-...|.|.+..... ...
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 456899999999999999988873210 011122456777764332 356
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC-------CChhhHHHHHHHHhcCC-cEEEEe
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQT-KYQVVL 210 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-------~~~~~~~~~~~l~~~~~-p~i~v~ 210 (243)
.+.++|+||++ .++...+.....+|+.++|||++.+ ...+..+.+-+..-+++ .+++++
T Consensus 86 ~~tIiDaPGHr-------------dFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVav 152 (428)
T COG5256 86 NFTIIDAPGHR-------------DFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAV 152 (428)
T ss_pred eEEEeeCCchH-------------HHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEE
Confidence 69999999974 3666777777779999999999876 55566676666666776 489999
Q ss_pred ecCCCCC--hHHHHHHHHHHHHHH
Q 026112 211 TKTDTVF--PIDVARRAMQIEESL 232 (243)
Q Consensus 211 nK~D~~~--~~~~~~~~~~l~~~l 232 (243)
||+|+++ ...+.+....+...+
T Consensus 153 NKMD~v~wde~rf~ei~~~v~~l~ 176 (428)
T COG5256 153 NKMDLVSWDEERFEEIVSEVSKLL 176 (428)
T ss_pred EcccccccCHHHHHHHHHHHHHHH
Confidence 9999984 333444444444433
|
|
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.4e-12 Score=107.47 Aligned_cols=141 Identities=21% Similarity=0.290 Sum_probs=97.8
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccc-cccccCCCCceEEEEEEEe-------C------------------------
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFKL-------G------------------------ 137 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~-~~~vs~~~gtT~~~~~~~~-------~------------------------ 137 (243)
...|.|+++|..+.||||+|+.|+..+. ...+++.|.|.+-+..-+. |
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 4689999999999999999999998741 1234444433222211110 0
Q ss_pred -----------CcEEEEeCCCCCCCccchHHHHHH--HHHHHHHHhcccCccEEEEEEeCCC-CCChhhHHHHHHHHhcC
Q 026112 138 -----------TKLCLVDLPGYGFAYAKEEVKDAW--EELVKEYVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERSQ 203 (243)
Q Consensus 138 -----------~~~~liDTpG~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~v~~vvd~~~-~~~~~~~~~~~~l~~~~ 203 (243)
.++.+|||||+.+...+ .+++.+ ...+.-+... +|.|++++|+.. .++++..++++.++...
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQ-risR~ydF~~v~~WFaeR---~D~IiLlfD~hKLDIsdEf~~vi~aLkG~E 211 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQ-RISRGYDFTGVLEWFAER---VDRIILLFDAHKLDISDEFKRVIDALKGHE 211 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchh-cccccCChHHHHHHHHHh---ccEEEEEechhhccccHHHHHHHHHhhCCc
Confidence 27999999998764322 122222 2333333333 999999999754 46777889999999888
Q ss_pred CcEEEEeecCCCCChHHHHHHHHHHHHHHhh
Q 026112 204 TKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (243)
Q Consensus 204 ~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~ 234 (243)
..+-+|+||+|.++++++.+..-.+.=.++.
T Consensus 212 dkiRVVLNKADqVdtqqLmRVyGALmWslgk 242 (532)
T KOG1954|consen 212 DKIRVVLNKADQVDTQQLMRVYGALMWSLGK 242 (532)
T ss_pred ceeEEEeccccccCHHHHHHHHHHHHHhhhh
Confidence 9999999999999999988877666554444
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-12 Score=114.15 Aligned_cols=85 Identities=22% Similarity=0.213 Sum_probs=64.3
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---------------------------eCCcEEEEeC
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---------------------------LGTKLCLVDL 145 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---------------------------~~~~~~liDT 145 (243)
++|+++|.||+|||||+|+|++.. ..+++++++|.++.... ....+.++||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~--~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD--VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc--ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 589999999999999999999983 56789999998876532 1135789999
Q ss_pred CCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCC
Q 026112 146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (243)
Q Consensus 146 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~ 185 (243)
||+....... ..+..+++...+.+|++++|+|+.
T Consensus 80 aGl~~ga~~g------~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEG------RGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CCcCCCccch------hhHHHHHHHHHHHCCEEEEEEeCC
Confidence 9986532111 234455666666699999999986
|
|
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.7e-12 Score=103.30 Aligned_cols=107 Identities=13% Similarity=0.071 Sum_probs=67.1
Q ss_pred ecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccC
Q 026112 98 AGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVS 174 (243)
Q Consensus 98 vG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (243)
+|.+|||||||+++++.........+..|.+....... ....+.+|||||... +..+...|+..
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~----------~~~l~~~~~~~--- 67 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEK----------FGGLRDGYYIQ--- 67 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchh----------hhhhhHHHhcC---
Confidence 69999999999999986522111222222222212111 135788999999632 23344445544
Q ss_pred ccEEEEEEeCCCCCChhh-HHHHHHHHh--cCCcEEEEeecCCCCC
Q 026112 175 LKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 175 ~d~v~~vvd~~~~~~~~~-~~~~~~l~~--~~~p~i~v~nK~D~~~ 217 (243)
+|++++|+|.+...+... ..++..+.. .+.|+++|.||+|+..
T Consensus 68 ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~ 113 (200)
T smart00176 68 GQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKD 113 (200)
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 899999999886533222 245555544 3689999999999853
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.7e-12 Score=111.02 Aligned_cols=135 Identities=21% Similarity=0.294 Sum_probs=99.5
Q ss_pred CEEEEecCCCCchhHHHHHHhccccccc---------------ccC------CCC---ceEEEEEEEeCCcEEEEeCCCC
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVR---------------TSD------KPG---LTQTINFFKLGTKLCLVDLPGY 148 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~---------------vs~------~~g---tT~~~~~~~~~~~~~liDTpG~ 148 (243)
...+||-.|.||||||...|+=--. ++ .|+ ..| ||.-+++.+.+..+.|+||||+
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGg-aIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGG-AIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcc-hhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence 3789999999999999987763211 11 000 111 3334466677889999999998
Q ss_pred CCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHH
Q 026112 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI 228 (243)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l 228 (243)
.+. .++.|..+ -.+|..++|+|+..++.++...+++.++..++|++-.+||.|.... +-.+.++.+
T Consensus 92 eDF-----SEDTYRtL--------tAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~r-dP~ELLdEi 157 (528)
T COG4108 92 EDF-----SEDTYRTL--------TAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGR-DPLELLDEI 157 (528)
T ss_pred ccc-----chhHHHHH--------HhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccC-ChHHHHHHH
Confidence 652 12233333 3389999999999999999999999999999999999999998754 445677888
Q ss_pred HHHHhhCCCccc-cC
Q 026112 229 EESLKANNSLVQ-PV 242 (243)
Q Consensus 229 ~~~l~~~~~~~~-pi 242 (243)
++.|+-...++. ||
T Consensus 158 E~~L~i~~~PitWPI 172 (528)
T COG4108 158 EEELGIQCAPITWPI 172 (528)
T ss_pred HHHhCcceecccccc
Confidence 888887766665 54
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.2e-12 Score=121.82 Aligned_cols=114 Identities=17% Similarity=0.165 Sum_probs=78.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccc--------ccccC------CCCceEEEEE-------EEeCCcEEEEeCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV--------VRTSD------KPGLTQTINF-------FKLGTKLCLVDLPGYG 149 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~--------~~vs~------~~gtT~~~~~-------~~~~~~~~liDTpG~~ 149 (243)
...+|+++|..++|||||+++|+..... ....+ ..|+|.+... ...+..+.++||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 3569999999999999999999753110 00011 1334443321 1235679999999986
Q ss_pred CCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
+.. ......+ ..+|++++|+|+..++...+..+++.+...+.|+++|+||+|...
T Consensus 98 ~f~----------~~~~~al---~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 DFG----------GDVTRAM---RAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLI 152 (720)
T ss_pred ccH----------HHHHHHH---HhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhccc
Confidence 411 1112222 239999999999888888888888877777899999999999873
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-11 Score=118.66 Aligned_cols=112 Identities=18% Similarity=0.277 Sum_probs=77.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCC---------------CceEEEE---EEE----eCCcEEEEeCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP---------------GLTQTIN---FFK----LGTKLCLVDLPGY 148 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~---------------gtT~~~~---~~~----~~~~~~liDTpG~ 148 (243)
...+|+++|+.++|||||+.+|+...+.. ..... |.|.+.. +.. .+..+.++||||+
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i-~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMI-SEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCc-chhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 45699999999999999999998653211 11111 2232221 111 2456899999998
Q ss_pred CCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
.+. ...+...+ ..+|++++|+|+..++......++..+...+.|.++++||+|+.
T Consensus 98 ~df----------~~~~~~~l---~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VDF----------GGDVTRAM---RAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred cCh----------HHHHHHHH---HhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhh
Confidence 651 11122222 33899999999998888888888888777788999999999986
|
|
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-11 Score=96.80 Aligned_cols=112 Identities=19% Similarity=0.179 Sum_probs=77.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE-------EEeCCcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF-------FKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~-------~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
.+++.++|.+|+|||.|+-.++.+.. ..+.+ .|.-+.+ ..-..++.+|||+|.. .+...
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF-~~~hd---~TiGvefg~r~~~id~k~IKlqiwDtaGqe----------~frsv 71 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRF-QPVHD---LTIGVEFGARMVTIDGKQIKLQIWDTAGQE----------SFRSV 71 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCc-ccccc---ceeeeeeceeEEEEcCceEEEEEEecCCcH----------HHHHH
Confidence 47899999999999999999999832 22222 3333322 2224689999999963 34567
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCChHH
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~~~~ 220 (243)
.+.|++. +-++++|+|.....+... ..|+..++++ +.-++++.||+||...++
T Consensus 72 ~~syYr~---a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~ 128 (216)
T KOG0098|consen 72 TRSYYRG---AAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARRE 128 (216)
T ss_pred HHHHhcc---CcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcccc
Confidence 7778877 788999999876533333 2344444443 466899999999986543
|
|
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.5e-12 Score=98.12 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=67.8
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCce-EEEE--EEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN--FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT-~~~~--~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
+|+++|.+|+|||||++++.+... ...+..|. .+.. ... ....+.+|||+|... +..+...
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~----------~~~~~~~ 67 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF---PENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQER----------FDSLRDI 67 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST---TSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGG----------GHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc---cccccccccccccccccccccccccccccccccccc----------ccccccc
Confidence 689999999999999999998731 22222222 2221 111 234688999999532 1122223
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~~ 218 (243)
++.. +|++++|+|.....+-.. ..++..+... ..|+++|.||+|+...
T Consensus 68 ~~~~---~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~ 119 (162)
T PF00071_consen 68 FYRN---SDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDE 119 (162)
T ss_dssp HHTT---ESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGG
T ss_pred cccc---cccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence 3333 899999999875321111 2444444322 4799999999998863
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=117.60 Aligned_cols=123 Identities=25% Similarity=0.316 Sum_probs=83.4
Q ss_pred ecCCCCchhHHHHHHhcccccc-c---------ccC------CCCceEEE---EEEEeCCcEEEEeCCCCCCCccchHHH
Q 026112 98 AGRSNVGKSSMLNALTRQWGVV-R---------TSD------KPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVK 158 (243)
Q Consensus 98 vG~~naGKSSLin~L~~~~~~~-~---------vs~------~~gtT~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~ 158 (243)
+|++|+|||||+++|+...... . +.+ ..|.|... .+...+..+.+|||||+.+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~-------- 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVD-------- 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHH--------
Confidence 5999999999999997653210 0 111 13344433 2233477899999999743
Q ss_pred HHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhh
Q 026112 159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (243)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~ 234 (243)
+......++. .+|++++|+|++.+.......++..+...++|+++|+||+|+... ......+.+++.+..
T Consensus 73 --~~~~~~~~l~---~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~-~~~~~~~~l~~~l~~ 142 (668)
T PRK12740 73 --FTGEVERALR---VLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGA-DFFRVLAQLQEKLGA 142 (668)
T ss_pred --HHHHHHHHHH---HhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCC-CHHHHHHHHHHHHCC
Confidence 1111222222 389999999998887777777778888889999999999999853 344556666666654
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.9e-11 Score=98.94 Aligned_cols=114 Identities=13% Similarity=0.042 Sum_probs=67.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
...+|+++|++|||||||+++++.........+..+.......+. ....+.+|||||... +..+...
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~----------~~~~~~~ 77 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEK----------FGGLRDG 77 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchh----------hhhhhHH
Confidence 457999999999999999976554322122222223222221111 135788999999532 1222233
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh--cCCcEEEEeecCCCCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~--~~~p~i~v~nK~D~~~ 217 (243)
++.. ++++++|+|.+...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 78 ~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 78 YYIK---GQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKD 127 (215)
T ss_pred Hhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 3332 799999999876432222 123333322 2589999999999864
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-12 Score=112.12 Aligned_cols=60 Identities=35% Similarity=0.557 Sum_probs=55.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~ 151 (243)
...+++++|.||+|||||||+|++. ..+.+++.||+|+..+....+..+.++||||+.-.
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k-~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii~~ 190 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGK-KVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIPP 190 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcc-cceeeCCCCceecceEEEEcCCCeEEecCCCcCCC
Confidence 3468999999999999999999999 66899999999999999999999999999998754
|
|
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.5e-12 Score=101.48 Aligned_cols=110 Identities=13% Similarity=-0.032 Sum_probs=67.0
Q ss_pred CEEEEecCCCCchhHHHH-HHhcccc--cccccCCCCceE--E-EE------------EEEeCCcEEEEeCCCCCCCccc
Q 026112 93 PEIAFAGRSNVGKSSMLN-ALTRQWG--VVRTSDKPGLTQ--T-IN------------FFKLGTKLCLVDLPGYGFAYAK 154 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin-~L~~~~~--~~~vs~~~gtT~--~-~~------------~~~~~~~~~liDTpG~~~~~~~ 154 (243)
.+|+++|.+|+|||||++ .+.+... ......+.+|.. + .. .......+.+|||||...
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~---- 78 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD---- 78 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh----
Confidence 589999999999999996 5544310 011222223321 1 10 001135788999999632
Q ss_pred hHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhH--HHHHHHHh--cCCcEEEEeecCCCCC
Q 026112 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~--~~~p~i~v~nK~D~~~ 217 (243)
.+...++ ..+|++++|+|.+...+.... .++..+.. .+.|+++|.||+|+..
T Consensus 79 --------~~~~~~~---~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 134 (195)
T cd01873 79 --------KDRRFAY---GRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRY 134 (195)
T ss_pred --------hhhcccC---CCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 0111122 349999999998765433332 35555543 2589999999999864
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-11 Score=103.64 Aligned_cols=87 Identities=23% Similarity=0.261 Sum_probs=68.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe--------------------CCcEEEEeCCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGF 150 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~--------------------~~~~~liDTpG~~~ 150 (243)
+.++++|||.||+|||||+|+|+.. . +.+.++|+||.+++.... ...+.++|.+|+..
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~-~-a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKS-K-AGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcC-C-CCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 5679999999999999999999998 4 459999999999865432 24789999999865
Q ss_pred CccchHHHHHHHHHHHHHHhcccCccEEEEEEeCC
Q 026112 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (243)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~ 185 (243)
..+.. +.+...|++..+.+|.+++|+++.
T Consensus 97 GAs~G------~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 97 GASAG------EGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred CcccC------cCchHHHHHhhhhccceeEEEEec
Confidence 43222 245667777777899999999864
|
|
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.4e-11 Score=90.57 Aligned_cols=114 Identities=19% Similarity=0.217 Sum_probs=80.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEE-----eCCcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK-----LGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~-----~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
.++|+++|..|+|||.|+..++..- -.+..|.|..+ .+.. ...++.+|||+|. +.+..+
T Consensus 7 lfkivlvgnagvgktclvrrftqgl----fppgqgatigvdfmiktvev~gekiklqiwdtagq----------erfrsi 72 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGL----FPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQ----------ERFRSI 72 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccC----CCCCCCceeeeeEEEEEEEECCeEEEEEEeeccch----------HHHHHH
Confidence 4799999999999999999998762 12223334332 2221 2457899999994 235667
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCChHHHH
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVA 222 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~~~~~~ 222 (243)
...|++. ++.+++|.|.+...+... .+|+..+++. .+--++|.||+|+.+..++.
T Consensus 73 tqsyyrs---ahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp 131 (213)
T KOG0095|consen 73 TQSYYRS---AHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVP 131 (213)
T ss_pred HHHHhhh---cceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhh
Confidence 7777776 899999999887655444 3677776654 34568999999998765543
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.1e-11 Score=99.53 Aligned_cols=130 Identities=15% Similarity=0.139 Sum_probs=73.1
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe----CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
+|+++|+.++||||..+.+++.. .+.-...-+.|.++..... ...+.+||+||........ +..-.+...
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~-~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~-----~~~~~~~if 74 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKY-SPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY-----FNSQREEIF 74 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT-----HTCCHHHHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCC-CchhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc-----ccccHHHHH
Confidence 68999999999999999999873 2333445566666654433 4589999999975421110 000011111
Q ss_pred hcccCccEEEEEEeCCCCCChhhH-H---HHHHHHhc--CCcEEEEeecCCCCChHHHHHHHHHHHHHH
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDH-E---LISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESL 232 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~-~---~~~~l~~~--~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l 232 (243)
..+.+++||+|+.......+. . .++.+... +..+-+.++|+|+..++........+.+.+
T Consensus 75 ---~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i 140 (232)
T PF04670_consen 75 ---SNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRI 140 (232)
T ss_dssp ---CTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHH
T ss_pred ---hccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHH
Confidence 238999999998733233332 2 22333222 577999999999998876655554444433
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-11 Score=98.16 Aligned_cols=108 Identities=15% Similarity=0.013 Sum_probs=65.4
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE-E-EEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-N-FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~-~-~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
+|+++|++|+|||||++++..... . .....++.+. . ... ....+.++||||..... .....+
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~-~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~----------~~~~~~ 69 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEF-P--EEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYE----------RLRPLS 69 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-C--cccCCcccceEEEEEEECCEEEEEEEEECCCChhcc----------ccchhh
Confidence 799999999999999999985522 1 1111222211 1 111 12457899999964311 111111
Q ss_pred HhcccCccEEEEEEeCCCCCChhh--HHHHHHHHhc--CCcEEEEeecCCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVF 217 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~D~~~ 217 (243)
+ ..+|++++++|.+...+... ..++..+... ..|+++|.||+|+..
T Consensus 70 ~---~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~ 119 (187)
T cd04129 70 Y---SKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQ 119 (187)
T ss_pred c---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhh
Confidence 2 34899999999765422222 2355555432 689999999999853
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-11 Score=97.53 Aligned_cols=129 Identities=21% Similarity=0.289 Sum_probs=79.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccc-ccccCCCCceEEEEEEEe-CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~-~~vs~~~gtT~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.+.|+++|.+++|||+|+-.|...... ..+|-.| ..-.+.. ...+.+||.||+.. . ..-+..|+
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiep----n~a~~r~gs~~~~LVD~PGH~r------l----R~kl~e~~ 103 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEP----NEATYRLGSENVTLVDLPGHSR------L----RRKLLEYL 103 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeeeeecc----ceeeEeecCcceEEEeCCCcHH------H----HHHHHHHc
Confidence 368999999999999999888765211 1111111 1112222 44579999999732 1 22233444
Q ss_pred hcccCccEEEEEEeCCCC---CChhhHHHHHHHHh-----cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhh
Q 026112 170 STRVSLKRVCLLIDTKWG---VKPRDHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~---~~~~~~~~~~~l~~-----~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~ 234 (243)
.+...+-.|++|+|+..- .......++..+.. ...|+++++||.|+..........+.++++++.
T Consensus 104 ~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~ 176 (238)
T KOG0090|consen 104 KHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHK 176 (238)
T ss_pred cccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHH
Confidence 444568899999997642 11222333344432 357899999999999776666666666665543
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.5e-12 Score=107.03 Aligned_cols=61 Identities=33% Similarity=0.573 Sum_probs=55.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~ 152 (243)
...+|+++|.||+|||||+|+|++. ....+++.+|+|++.+....+..+.++||||+..+.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~~ 180 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGK-KIAKTGNRPGVTKAQQWIKLGKGLELLDTPGILWPK 180 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC-CccccCCCCCeEEEEEEEEeCCcEEEEECCCcCCCC
Confidence 4579999999999999999999998 557899999999999988888889999999987653
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.6e-12 Score=97.68 Aligned_cols=58 Identities=34% Similarity=0.487 Sum_probs=51.6
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCC
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~ 148 (243)
....+++++|.||+|||||+|+|++. ....++..++||++......+..+.++||||+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNK-LKLKVGNVPGTTTSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcc-ccccccCCCCcccceEEEEecCCEEEEECCCC
Confidence 35689999999999999999999998 44668899999999988887888999999996
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.3e-12 Score=101.46 Aligned_cols=57 Identities=35% Similarity=0.475 Sum_probs=49.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccc-------cccccCCCCceEEEEEEEeCCcEEEEeCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWG-------VVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~-------~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~ 148 (243)
...++++|.+|+|||||+|+|++... ...++..+|||++......+..+.++||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGNGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCCCCEEEeCcCC
Confidence 46899999999999999999998531 2467889999999998887768999999996
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.3e-11 Score=113.16 Aligned_cols=137 Identities=21% Similarity=0.285 Sum_probs=98.5
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccccc-ccccC---------------CCCceEEE---EEEEeC-CcEEEEeCCCCC
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSD---------------KPGLTQTI---NFFKLG-TKLCLVDLPGYG 149 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~-~~vs~---------------~~gtT~~~---~~~~~~-~~~~liDTpG~~ 149 (243)
.+..+|+++|+-.+|||||..+|+-.... ...+. ..|.|... ...+.+ ..+.+|||||+.
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV 87 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV 87 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence 35679999999999999999888754211 11111 12233332 333444 899999999986
Q ss_pred CCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHH
Q 026112 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (243)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~ 229 (243)
+. ..-+.+.++ -+|+.++|+|+..++.++...+.+++...++|.++++||+|.... ++....+.+.
T Consensus 88 DF----------t~EV~rslr---vlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a-~~~~~~~~l~ 153 (697)
T COG0480 88 DF----------TIEVERSLR---VLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGA-DFYLVVEQLK 153 (697)
T ss_pred cc----------HHHHHHHHH---hhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECcccccc-ChhhhHHHHH
Confidence 62 111222222 289999999999999999999999999999999999999999865 5666777788
Q ss_pred HHHhhCCCccc
Q 026112 230 ESLKANNSLVQ 240 (243)
Q Consensus 230 ~~l~~~~~~~~ 240 (243)
..+...-..++
T Consensus 154 ~~l~~~~~~v~ 164 (697)
T COG0480 154 ERLGANPVPVQ 164 (697)
T ss_pred HHhCCCceeee
Confidence 88777555544
|
|
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-11 Score=91.78 Aligned_cols=110 Identities=17% Similarity=0.191 Sum_probs=75.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCC-CceEEEEEEEe-----CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTINFFKL-----GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~-gtT~~~~~~~~-----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
+..+|+|.+|+|||||+-.+.... ....+. .+-.|..+... ...+.||||+|. +.+..+..
T Consensus 9 fkllIigDsgVGKssLl~rF~ddt---Fs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGq----------ErFrtits 75 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDT---FSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQ----------ERFRTITS 75 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcc---cccceEEEeeeeEEEEEeecCCcEEEEEEeecccH----------HHHHHHHH
Confidence 567899999999999999888763 112221 11123332222 346889999993 34567777
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc--CCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~--~~p~i~v~nK~D~~~~ 218 (243)
.|++. .+++++|+|.+.+.+... ..|++.++.. .+|-++|.||.|..+.
T Consensus 76 tyyrg---thgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~R 127 (198)
T KOG0079|consen 76 TYYRG---THGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPER 127 (198)
T ss_pred HHccC---CceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccc
Confidence 77776 899999999887643333 4666666544 4788999999998754
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.9e-12 Score=95.44 Aligned_cols=55 Identities=38% Similarity=0.536 Sum_probs=49.6
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCC
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYG 149 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~ 149 (243)
+++++|.+|+|||||+|+|++. ....++..+|+|++......+..+.++||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGK-KKVSVSATPGKTKHFQTIFLTPTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCC-CceeeCCCCCcccceEEEEeCCCEEEEECCCcC
Confidence 8999999999999999999998 445788999999998888777789999999984
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.3e-11 Score=92.87 Aligned_cols=139 Identities=21% Similarity=0.244 Sum_probs=88.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc----ccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~----~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~ 163 (243)
....|+|+|..|||||||+.++-... ....++.+. +|.-.+..+ .+..+.+||.-|. +..+ +
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~-~tvgLnig~i~v~~~~l~fwdlgGQ------e~lr----S 84 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKIT-PTVGLNIGTIEVCNAPLSFWDLGGQ------ESLR----S 84 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHee-cccceeecceeeccceeEEEEcCCh------HHHH----H
Confidence 45689999999999999998876642 111112111 122222222 1567899999994 3333 4
Q ss_pred HHHHHHhcccCccEEEEEEeCCCC--CChhhH---HHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHH--HHHhhCC
Q 026112 164 LVKEYVSTRVSLKRVCLLIDTKWG--VKPRDH---ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE--ESLKANN 236 (243)
Q Consensus 164 ~~~~~~~~~~~~d~v~~vvd~~~~--~~~~~~---~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~--~~l~~~~ 236 (243)
+...|+.. ++++++|||+.++ +..... .+...=...+.|+++.+||.|+-...+..+....+. +.+....
T Consensus 85 lw~~yY~~---~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd 161 (197)
T KOG0076|consen 85 LWKKYYWL---AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRD 161 (197)
T ss_pred HHHHHHHH---hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCcc
Confidence 44555555 9999999999873 222221 222222334899999999999987766665554444 5666666
Q ss_pred CccccCC
Q 026112 237 SLVQPVV 243 (243)
Q Consensus 237 ~~~~pi~ 243 (243)
.+++||+
T Consensus 162 ~~~~pvS 168 (197)
T KOG0076|consen 162 NPFQPVS 168 (197)
T ss_pred Cccccch
Confidence 7777875
|
|
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.5e-11 Score=89.77 Aligned_cols=118 Identities=19% Similarity=0.274 Sum_probs=82.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
+..+|+++|-.|+|||||+..|.+. +...+.+..|.......+....++.+||.-|.+. ++-.|. .|+.
T Consensus 16 rEirilllGldnAGKTT~LKqL~sE-D~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~------IRpyWs----NYye 84 (185)
T KOG0074|consen 16 REIRILLLGLDNAGKTTFLKQLKSE-DPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRG------IRPYWS----NYYE 84 (185)
T ss_pred ceEEEEEEecCCCcchhHHHHHccC-ChhhccccCCcceEEEeecCcEEEEEEecCCccc------cchhhh----hhhh
Confidence 4579999999999999999999998 5566666666554444444457899999999543 333444 4444
Q ss_pred cccCccEEEEEEeCCCC--CChhhHHHHHHHH---hcCCcEEEEeecCCCCChHHHH
Q 026112 171 TRVSLKRVCLLIDTKWG--VKPRDHELISLME---RSQTKYQVVLTKTDTVFPIDVA 222 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~---~~~~p~i~v~nK~D~~~~~~~~ 222 (243)
. .|.++||+|+.+. +.+...++.+.+. -..+|+.+..||.|++......
T Consensus 85 n---vd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~e 138 (185)
T KOG0074|consen 85 N---VDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVE 138 (185)
T ss_pred c---cceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchH
Confidence 4 8999999997653 2222234444443 3468999999999998654433
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-11 Score=104.84 Aligned_cols=60 Identities=32% Similarity=0.536 Sum_probs=53.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~ 151 (243)
...+++++|.||+|||||+|+|++. ....+++.+|+|+..+....+..+.++||||+..+
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGK-KVAKVGNRPGVTKGQQWIKLSDGLELLDTPGILWP 176 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC-CccccCCCCCeecceEEEEeCCCEEEEECCCcccC
Confidence 4578999999999999999999998 55788999999999998888888999999998654
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-10 Score=101.31 Aligned_cols=136 Identities=22% Similarity=0.318 Sum_probs=107.7
Q ss_pred EEEEecCCCCchhHHHHHHhccc-ccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~-~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.|+..|.--.|||||+.++++.. +...-....|+|.|..+++. +..+.++|.||+. .++...+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~-------------~~i~~mi 68 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHP-------------DFISNLL 68 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcH-------------HHHHHHH
Confidence 46788999999999999999863 22334557899999988874 5679999999983 3555555
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
.....+|..++|||+.+++..+..+.+-.+..++++ .++|+||+|..++..+......+...+.....+++|+
T Consensus 69 ag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~ 142 (447)
T COG3276 69 AGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKT 142 (447)
T ss_pred hhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhccccccccccc
Confidence 666668999999999999999999999999999877 4999999999998877777777776666444444443
|
|
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.3e-11 Score=91.76 Aligned_cols=109 Identities=21% Similarity=0.163 Sum_probs=74.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE-------EEeCCcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF-------FKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~-------~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
.++|+++|.+|+|||||+-.++... ..+...+|.-+.+ .....++.||||+|.. .+..+
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~----fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqE----------rFRtL 76 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNT----FDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQE----------RFRTL 76 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcc----cCccCCceeeeeEEEEEEEEcCceEEEEEEeccchH----------hhhcc
Confidence 4799999999999999999998873 2333344443322 2224578899999952 35566
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc----CCcEEEEeecCCCCC
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS----QTKYQVVLTKTDTVF 217 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~----~~p~i~v~nK~D~~~ 217 (243)
...|++. +.++++|.|.+...+... ..|++.+... ++-.++|.||+|.-.
T Consensus 77 TpSyyRg---aqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes 131 (209)
T KOG0080|consen 77 TPSYYRG---AQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES 131 (209)
T ss_pred CHhHhcc---CceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh
Confidence 7778777 899999999876432222 2345555432 344679999999753
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=97.04 Aligned_cols=136 Identities=20% Similarity=0.257 Sum_probs=100.2
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccc--------------ccccccCCCCceEEEE---EEEeCCcEEEEeCCCCCCCc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQW--------------GVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAY 152 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~--------------~~~~vs~~~gtT~~~~---~~~~~~~~~liDTpG~~~~~ 152 (243)
.+..+|+.+|.-+.|||||.-+|+... +.+.-....|.|.... +...+..+-.+|+||+.
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHa--- 86 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHA--- 86 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChH---
Confidence 356799999999999999999988631 0011122345665543 22236789999999974
Q ss_pred cchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCChHHHHH-HHHHHHH
Q 026112 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVAR-RAMQIEE 230 (243)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~~~~~~-~~~~l~~ 230 (243)
.+++..+....+.|..|+|+.+.++..++..+.+=+.++.++| +++++||+|+++..++.+ .-+.+++
T Consensus 87 ----------DYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvre 156 (394)
T COG0050 87 ----------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRE 156 (394)
T ss_pred ----------HHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHH
Confidence 3566666666668999999999998888888877677788886 678899999998666544 4467888
Q ss_pred HHhhCCCc
Q 026112 231 SLKANNSL 238 (243)
Q Consensus 231 ~l~~~~~~ 238 (243)
.|..++.+
T Consensus 157 LLs~y~f~ 164 (394)
T COG0050 157 LLSEYGFP 164 (394)
T ss_pred HHHHcCCC
Confidence 88887765
|
|
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-10 Score=86.54 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=73.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccc-cccCCCCceEEE-EEEE--eCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVV-RTSDKPGLTQTI-NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~-~vs~~~gtT~~~-~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+++.++|.+.+|||||+-+.++..... .++ .-|..-.+ ..+. ...++.+|||+|.. .+..+...
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvs-TvGidFKvKTvyr~~kRiklQiwDTagqE----------ryrtiTTa 89 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVS-TVGIDFKVKTVYRSDKRIKLQIWDTAGQE----------RYRTITTA 89 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceee-eeeeeEEEeEeeecccEEEEEEEecccch----------hhhHHHHH
Confidence 4699999999999999999999873111 111 11111111 1111 14679999999953 24556666
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCChH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~~ 219 (243)
|++. ++++++++|.++..+... ..+...+.. .+.|+++|.||||+.++.
T Consensus 90 yyRg---amgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eR 142 (193)
T KOG0093|consen 90 YYRG---AMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSER 142 (193)
T ss_pred Hhhc---cceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccce
Confidence 7766 899999999875421111 223333332 268999999999997654
|
|
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-11 Score=95.89 Aligned_cols=119 Identities=18% Similarity=0.280 Sum_probs=81.1
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
....+|+++|-.||||||++..|-.. ....+.+.-|.......+. +..+.+||.-|... ++..|. .|+
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~-E~vttvPTiGfnVE~v~yk-n~~f~vWDvGGq~k------~R~lW~----~Y~ 82 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLG-EIVTTVPTIGFNVETVEYK-NISFTVWDVGGQEK------LRPLWK----HYF 82 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccC-CcccCCCccccceeEEEEc-ceEEEEEecCCCcc------cccchh----hhc
Confidence 34569999999999999999998777 3344455555544443333 88999999999632 233343 444
Q ss_pred hcccCccEEEEEEeCCCC--CChhhHHHHHHHHhc---CCcEEEEeecCCCCChHHHHH
Q 026112 170 STRVSLKRVCLLIDTKWG--VKPRDHELISLMERS---QTKYQVVLTKTDTVFPIDVAR 223 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~~---~~p~i~v~nK~D~~~~~~~~~ 223 (243)
.. .++++||+|+++. +.+...++...+... +.|+++..||.|+...-...+
T Consensus 83 ~~---t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~e 138 (181)
T KOG0070|consen 83 QN---TQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAE 138 (181)
T ss_pred cC---CcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHH
Confidence 33 8999999999864 333334555555433 689999999999986544433
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=98.40 Aligned_cols=140 Identities=19% Similarity=0.206 Sum_probs=98.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccc---------cccc----------------------CCCCceEEEEEEE---e
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV---------VRTS----------------------DKPGLTQTINFFK---L 136 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~---------~~vs----------------------~~~gtT~~~~~~~---~ 136 (243)
+..+++.+|.-.-||||||-+|+-..+. ...| ...|.|.|+.+.+ .
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 4568999999999999999999864310 0111 1234788875443 4
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDT 215 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~ 215 (243)
..+|.+.||||+ +++.+.+......||+.+++||+..++.++.....-...-++++ +++++||+||
T Consensus 85 KRkFIiADTPGH-------------eQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDL 151 (431)
T COG2895 85 KRKFIIADTPGH-------------EQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDL 151 (431)
T ss_pred cceEEEecCCcH-------------HHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecc
Confidence 678999999997 35677777777789999999999999888887766666667765 8899999999
Q ss_pred CChH--HHHHHHHHHHH---HHhhCCCccccCC
Q 026112 216 VFPI--DVARRAMQIEE---SLKANNSLVQPVV 243 (243)
Q Consensus 216 ~~~~--~~~~~~~~l~~---~l~~~~~~~~pi~ 243 (243)
++-. .+....+++.. .++-......|+|
T Consensus 152 vdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiS 184 (431)
T COG2895 152 VDYSEEVFEAIVADYLAFAAQLGLKDVRFIPIS 184 (431)
T ss_pred cccCHHHHHHHHHHHHHHHHHcCCCcceEEech
Confidence 9543 34444444444 4444434444553
|
|
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.6e-11 Score=97.77 Aligned_cols=84 Identities=20% Similarity=0.215 Sum_probs=53.8
Q ss_pred cEEEEeCCCCCCC---ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChh-----hHHHHHHHHhcCCcEEEEe
Q 026112 139 KLCLVDLPGYGFA---YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR-----DHELISLMERSQTKYQVVL 210 (243)
Q Consensus 139 ~~~liDTpG~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~-----~~~~~~~l~~~~~p~i~v~ 210 (243)
++++|||||..+. ++...+ +.+. +.. ...-+|+||+|....-.+. -......+.+...|+++|+
T Consensus 117 ~~~liDTPGQIE~FtWSAsGsI------Ite~-las-s~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvf 188 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWSASGSI------ITET-LAS-SFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVF 188 (366)
T ss_pred CEEEEcCCCceEEEEecCCccc------hHhh-Hhh-cCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEE
Confidence 6999999996553 111111 1111 111 1156789999976532222 2345566677899999999
Q ss_pred ecCCCCChHHHHHHHHHHHH
Q 026112 211 TKTDTVFPIDVARRAMQIEE 230 (243)
Q Consensus 211 nK~D~~~~~~~~~~~~~l~~ 230 (243)
||+|+.+..-..+++.+++.
T Consensus 189 NK~Dv~d~~fa~eWm~DfE~ 208 (366)
T KOG1532|consen 189 NKTDVSDSEFALEWMTDFEA 208 (366)
T ss_pred ecccccccHHHHHHHHHHHH
Confidence 99999998877776655554
|
|
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.9e-12 Score=110.25 Aligned_cols=59 Identities=39% Similarity=0.620 Sum_probs=54.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~ 151 (243)
...|++||+||+||||+||+|.|. +...||..||.|++++.+.+...+++.||||+.-+
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~-KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPGLVfP 372 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGR-KKVSVSSTPGKTKHFQTIFLSPSVCLCDCPGLVFP 372 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcC-ceeeeecCCCCcceeEEEEcCCCceecCCCCcccc
Confidence 579999999999999999999999 66889999999999999999999999999997654
|
|
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=7e-11 Score=88.71 Aligned_cols=111 Identities=20% Similarity=0.269 Sum_probs=76.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
...+.++|-.|+|||||.|.++.........+ |+..+.+.. +..+.+||.||... +..+.++|
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmip----tvGfnmrk~tkgnvtiklwD~gGq~r----------frsmWery 85 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIP----TVGFNMRKVTKGNVTIKLWDLGGQPR----------FRSMWERY 85 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcc----cccceeEEeccCceEEEEEecCCCcc----------HHHHHHHH
Confidence 35889999999999999999887432222333 333333322 45788999999643 34555566
Q ss_pred HhcccCccEEEEEEeCCCC--CChhhHHHHHHHHh---cCCcEEEEeecCCCCChH
Q 026112 169 VSTRVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~---~~~p~i~v~nK~D~~~~~ 219 (243)
.+. +++++|++|+.++ ++....++...+.. .++|++++.||.|+.+.-
T Consensus 86 cR~---v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL 138 (186)
T KOG0075|consen 86 CRG---VSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL 138 (186)
T ss_pred hhc---CcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc
Confidence 555 8999999998763 33334455555543 479999999999998653
|
|
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-10 Score=103.38 Aligned_cols=135 Identities=21% Similarity=0.245 Sum_probs=93.2
Q ss_pred CCCCCCEEEEecCCCCchhHHHHHHhccccc-------------ccccCCCCceEEE---EEEEeC---CcEEEEeCCCC
Q 026112 88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGV-------------VRTSDKPGLTQTI---NFFKLG---TKLCLVDLPGY 148 (243)
Q Consensus 88 ~~~~~~~I~ivG~~naGKSSLin~L~~~~~~-------------~~vs~~~gtT~~~---~~~~~~---~~~~liDTpG~ 148 (243)
|.++..+++||-+-..|||||..+|+..... -.+....|.|... ...+.+ +.+.+|||||+
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 4456778999999999999999999875320 1122345666553 233333 77899999998
Q ss_pred CCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHH
Q 026112 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI 228 (243)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l 228 (243)
.+. ..++++.+ . .|+++++|+|+.+++..+....+...-..+..+|.|+||+|+... +..+....+
T Consensus 136 vDF--s~EVsRsl--------a---ac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~a-dpe~V~~q~ 201 (650)
T KOG0462|consen 136 VDF--SGEVSRSL--------A---ACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSA-DPERVENQL 201 (650)
T ss_pred ccc--cceehehh--------h---hcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCC-CHHHHHHHH
Confidence 763 22222221 1 189999999999999888877666666778999999999999854 334444555
Q ss_pred HHHHhhCC
Q 026112 229 EESLKANN 236 (243)
Q Consensus 229 ~~~l~~~~ 236 (243)
.+.++...
T Consensus 202 ~~lF~~~~ 209 (650)
T KOG0462|consen 202 FELFDIPP 209 (650)
T ss_pred HHHhcCCc
Confidence 55555443
|
|
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-10 Score=86.70 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=77.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++++++|..|+|||.|+..+........+++.-|+.-...+..+ ..++.+|||+|. +.+....+.|
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQ----------ErFRSVtRsY 78 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQ----------ERFRSVTRSY 78 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccH----------HHHHHHHHHH
Confidence 468999999999999999999886322233433333222222233 347889999994 2456777888
Q ss_pred HhcccCccEEEEEEeCCCCCChhhHHHHHHHHh------cCCcEEEEeecCCCCChHHH
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMER------SQTKYQVVLTKTDTVFPIDV 221 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~------~~~p~i~v~nK~D~~~~~~~ 221 (243)
++. +-+.++|.|.+.. +....+-+++.. .++-++++.||.|+....++
T Consensus 79 YRG---AAGAlLVYD~Tsr--dsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~V 132 (214)
T KOG0086|consen 79 YRG---AAGALLVYDITSR--DSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREV 132 (214)
T ss_pred hcc---ccceEEEEeccch--hhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhh
Confidence 887 7788899998754 233334444432 24668899999999876543
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.6e-11 Score=98.40 Aligned_cols=84 Identities=25% Similarity=0.269 Sum_probs=53.9
Q ss_pred CcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHH-----hcCCcEEEEeec
Q 026112 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME-----RSQTKYQVVLTK 212 (243)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~-----~~~~p~i~v~nK 212 (243)
..+.++||||..+.... ...+..+.+.... .. .+++++|+|+.......+.....++. ..+.|+++|+||
T Consensus 97 ~~~~~~d~~g~~~~~~~---~~~~~~~~~~l~~-~~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK 171 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF---RESGRKLVERLSG-SS-KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNK 171 (253)
T ss_pred CCEEEEeCCcHHHHHhh---hHHHHHHHHHHHh-cC-CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEh
Confidence 47999999996542211 1222333332222 12 78999999998766666654444332 468999999999
Q ss_pred CCCCChHHHHHHHH
Q 026112 213 TDTVFPIDVARRAM 226 (243)
Q Consensus 213 ~D~~~~~~~~~~~~ 226 (243)
+|+....+......
T Consensus 172 ~D~~~~~~~~~~~~ 185 (253)
T PRK13768 172 ADLLSEEELERILK 185 (253)
T ss_pred HhhcCchhHHHHHH
Confidence 99998766544433
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.4e-10 Score=99.57 Aligned_cols=115 Identities=26% Similarity=0.325 Sum_probs=83.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccc----c----------ccCCCCceEE---EEEEEeCCcEEEEeCCCCCCCcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV----R----------TSDKPGLTQT---INFFKLGTKLCLVDLPGYGFAYA 153 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~----~----------vs~~~gtT~~---~~~~~~~~~~~liDTpG~~~~~~ 153 (243)
...+|+|+-.-..|||||+..|+.....- . .....|.|.- ....+.+..+.++||||+.+.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADF-- 81 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADF-- 81 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCc--
Confidence 34689999999999999999999753110 0 1113344432 233445889999999998663
Q ss_pred chHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
..++++ .+.. .|.|++++|+.++..++...+++-.-..+.+-|+|+||+|....
T Consensus 82 GGEVER----vl~M-------VDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~A 135 (603)
T COG1217 82 GGEVER----VLSM-------VDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDA 135 (603)
T ss_pred cchhhh----hhhh-------cceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCC
Confidence 222322 2222 89999999999998899988888777788899999999999854
|
|
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-10 Score=86.93 Aligned_cols=136 Identities=18% Similarity=0.293 Sum_probs=85.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
..+|+.+|-+++||||++..|.-.. ...+-+..|.......+ -+..+.++|.-|. +.++..| +.|+..
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvGFnvetVty-kN~kfNvwdvGGq------d~iRplW----rhYy~g 84 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY-KNVKFNVWDVGGQ------DKIRPLW----RHYYTG 84 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCC-CcccccccceeEEEEEe-eeeEEeeeeccCc------hhhhHHH----HhhccC
Confidence 4689999999999999999998772 23233333333322222 3678999999994 3344444 455544
Q ss_pred ccCccEEEEEEeCCCC--CChhhHHHHHHHHh---cCCcEEEEeecCCCCChHHHHHHHHHHH-HHHhhCCCccccC
Q 026112 172 RVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIE-ESLKANNSLVQPV 242 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~---~~~p~i~v~nK~D~~~~~~~~~~~~~l~-~~l~~~~~~~~pi 242 (243)
..++++|+|+... +.+...++...+.. ...++++..||.|+.+....++..+.++ +.+......++|-
T Consensus 85 ---tqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~ 158 (180)
T KOG0071|consen 85 ---TQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPS 158 (180)
T ss_pred ---CceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecc
Confidence 7899999997654 22223445555432 2578999999999987655444444333 2245555566663
|
|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-10 Score=104.86 Aligned_cols=112 Identities=24% Similarity=0.379 Sum_probs=88.7
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEe-------------------CCcEEEEeCCCC
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-------------------GTKLCLVDLPGY 148 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~-------------------~~~~~liDTpG~ 148 (243)
-+.|.|+|+|+..+|||-|+..|.+.+ ..-+...|.|+.+ .+++. -+.+.+|||||+
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tN--VqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh 550 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTN--VQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH 550 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccc--cccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc
Confidence 357899999999999999999999974 5566777777765 22221 146899999996
Q ss_pred CCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
.. |..-..+...-||+.|+|+|..+++.++..+-+++|+..+.|||+++||+|.+
T Consensus 551 Es-------------FtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 551 ES-------------FTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRL 605 (1064)
T ss_pred hh-------------hhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhh
Confidence 32 22222233344999999999999999999999999999999999999999975
|
|
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.7e-11 Score=97.49 Aligned_cols=90 Identities=19% Similarity=0.234 Sum_probs=68.5
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE---EEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.+..+|+++|.|++|||||+..++... +....+.+||-.+. ..+.|..++++|.||+.+..++.. .-.+
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~--SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgk------GRGR 131 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTH--SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGK------GRGR 131 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcch--hhhhceeeeEEEeecceEEecCceEEEecCcccccccccCC------CCCc
Confidence 356799999999999999999999984 67788899988874 334588899999999877543221 1123
Q ss_pred HHHhcccCccEEEEEEeCCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWG 187 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~ 187 (243)
+..+..+.+|+|++|+|++.+
T Consensus 132 QviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 132 QVIAVARTADLILMVLDATKS 152 (364)
T ss_pred eEEEEeecccEEEEEecCCcc
Confidence 334445569999999999864
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.3e-11 Score=92.99 Aligned_cols=58 Identities=34% Similarity=0.617 Sum_probs=50.8
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCC
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~ 148 (243)
+..++++++|.+|+|||||+|+|++. ....++..+++|++...+..+..+.++||||+
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~-~~~~~~~~~~~T~~~~~~~~~~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGK-KVAKVGNKPGVTKGIQWIKISPGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCEEeeeEEEEecCCEEEEECCCC
Confidence 34578999999999999999999998 44578889999999988777778999999997
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.4e-10 Score=94.67 Aligned_cols=129 Identities=21% Similarity=0.292 Sum_probs=92.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc-----ccccccCCCCceEEEEEEEe------------CCcEEEEeCCCCCCCcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQTINFFKL------------GTKLCLVDLPGYGFAYA 153 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~-----~~~~vs~~~gtT~~~~~~~~------------~~~~~liDTpG~~~~~~ 153 (243)
...+++++|.-.+|||||-.+|.... +....|...|.|-|.-+... .-.+.++|+||+.
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa---- 81 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA---- 81 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH----
Confidence 45799999999999999999998642 11234555677777654331 2356999999973
Q ss_pred chHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHH
Q 026112 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 232 (243)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l 232 (243)
.+++..+....-.|+.++|+|+..+.+.+..+.+-.-+......++|+||.|...+......++...+.+
T Consensus 82 ---------sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~ 151 (522)
T KOG0461|consen 82 ---------SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKV 151 (522)
T ss_pred ---------HHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHH
Confidence 3556666666668999999999988877776655444455678899999999998765554444444433
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-10 Score=102.12 Aligned_cols=57 Identities=33% Similarity=0.482 Sum_probs=47.7
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCC-------ceEEEEEEEeCCcEEEEeCCCCCCC
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-------LTQTINFFKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~g-------tT~~~~~~~~~~~~~liDTpG~~~~ 151 (243)
.++|+|.||+|||||||+|++. ....++.+++ ||++...+.......++||||+...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~-~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPD-VELRVGKVSGKLGRGRHTTRHVELFELPNGGLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCc-cccccccccCCCCCCCCcCceeEEEECCCCcEEEeCCCcccc
Confidence 5899999999999999999987 4466777777 8999988877545589999999765
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.8e-11 Score=104.30 Aligned_cols=59 Identities=31% Similarity=0.380 Sum_probs=49.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc----ccccccCCCCceEEEEEEEeCCcEEEEeCCCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 150 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~----~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~ 150 (243)
...++++|.||+|||||||+|++.. +...++..||||++...+..+....++||||+..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi~~ 222 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGIIH 222 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCccc
Confidence 3589999999999999999998642 2345899999999998888777789999999854
|
|
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.7e-10 Score=95.77 Aligned_cols=131 Identities=24% Similarity=0.286 Sum_probs=83.4
Q ss_pred CCCchhhHHHHHhhCCCCcceeeeecccccccCCCCCCCCCCChhHHHHHHHhh-----------hh---hhhhHHHhhc
Q 026112 17 QPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENI-----------FR---NKLEFFAAAK 82 (243)
Q Consensus 17 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~-----------~~---~~~~~~~~~~ 82 (243)
=|+.+.++.|++-+.-+.+++.++++.+ ..+.+.-.....-+......-+ .+ +.+.......
T Consensus 58 iPLssrn~~~~~~~~~k~riiVlNK~DL----ad~~~~k~~iq~~~~~~~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l 133 (335)
T KOG2485|consen 58 IPLSSRNELFQDFLPPKPRIIVLNKMDL----ADPKEQKKIIQYLEWQNLESYIKLDCNKDCNKQVSPLLKILTILSEEL 133 (335)
T ss_pred cCCccccHHHHHhcCCCceEEEEecccc----cCchhhhHHHHHHHhhcccchhhhhhhhhhhhccccHHHHHHHHHHHH
Confidence 4889999999999999999999998632 2211110000000000000000 00 1111222222
Q ss_pred ccCCCCCCCCCEEEEecCCCCchhHHHHHHhcc----cccccccCCCCceEEEEE---EEeCCcEEEEeCCCCCCC
Q 026112 83 VSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 83 ~~~~~~~~~~~~I~ivG~~naGKSSLin~L~~~----~~~~~vs~~~gtT~~~~~---~~~~~~~~liDTpG~~~~ 151 (243)
.+.....+..+.|.++|-||+|||||+|++... .+.+.+++.||.|+.+.. +.....+.++||||+.-+
T Consensus 134 ~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P 209 (335)
T KOG2485|consen 134 VRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVP 209 (335)
T ss_pred HHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCC
Confidence 333344567899999999999999999998753 256789999999999854 234778999999998765
|
|
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.1e-10 Score=84.00 Aligned_cols=115 Identities=18% Similarity=0.163 Sum_probs=71.8
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (243)
.+++++|..|+|||||+++|-|.+ .. .-.|+.+.+.. =..+||||--- . - ..+....+...
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~--~l----ykKTQAve~~d----~~~IDTPGEy~---~--~----~~~Y~aL~tt~ 62 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGND--TL----YKKTQAVEFND----KGDIDTPGEYF---E--H----PRWYHALITTL 62 (148)
T ss_pred ceeEEecccccCchhHHHHhhcch--hh----hcccceeeccC----ccccCCchhhh---h--h----hHHHHHHHHHh
Confidence 479999999999999999999984 11 11244444322 23599999321 0 0 12233333445
Q ss_pred cCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHH
Q 026112 173 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~ 229 (243)
.++|++++|..+.++.+....-+ +.-...|+|-|++|+|+.++.++......+.
T Consensus 63 ~dadvi~~v~~and~~s~f~p~f---~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~ 116 (148)
T COG4917 63 QDADVIIYVHAANDPESRFPPGF---LDIGVKKVIGVVTKADLAEDADISLVKRWLR 116 (148)
T ss_pred hccceeeeeecccCccccCCccc---ccccccceEEEEecccccchHhHHHHHHHHH
Confidence 56999999988776533222211 2223567999999999998766655544433
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-10 Score=101.35 Aligned_cols=70 Identities=29% Similarity=0.371 Sum_probs=51.5
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCC-------ceEEEEEEEeCCcEEEEeCCCCCCCc----cchHHHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-------LTQTINFFKLGTKLCLVDLPGYGFAY----AKEEVKDAWE 162 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~g-------tT~~~~~~~~~~~~~liDTpG~~~~~----~~~~~~~~~~ 162 (243)
.++|+|.||+|||||||+|++. ....++.+++ ||+....+..+....++||||+.+-. ..+++...|.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~-~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~~liDTPGir~~~l~~~~~~~l~~~F~ 285 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPE-AEILVGDVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVREFGLWHLEPEQVTQGFV 285 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccc-cceeeccccCcCCCCcCceeeEEEEEecCCCEEEECCCCCcccCCCCCHHHHHHhhH
Confidence 5799999999999999999987 3355555543 78888888776556799999987642 2344555554
Q ss_pred HH
Q 026112 163 EL 164 (243)
Q Consensus 163 ~~ 164 (243)
.+
T Consensus 286 ei 287 (347)
T PRK12288 286 EF 287 (347)
T ss_pred HH
Confidence 43
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.6e-10 Score=107.51 Aligned_cols=99 Identities=23% Similarity=0.376 Sum_probs=73.2
Q ss_pred chhHHHHHHhcccccccccCCCCceEEEEEEEe--C-------------------CcEEEEeCCCCCCCccchHHHHHHH
Q 026112 104 GKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--G-------------------TKLCLVDLPGYGFAYAKEEVKDAWE 162 (243)
Q Consensus 104 GKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~--~-------------------~~~~liDTpG~~~~~~~~~~~~~~~ 162 (243)
+||||+.+|.+.. .......|.|+++-.+.. + +.+.+|||||+.. +.
T Consensus 473 ~KTtLLD~iR~t~--v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~----------F~ 540 (1049)
T PRK14845 473 HNTTLLDKIRKTR--VAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEA----------FT 540 (1049)
T ss_pred ccccHHHHHhCCC--cccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHH----------HH
Confidence 5999999999983 344556678887643321 1 2389999999632 12
Q ss_pred HHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 163 ~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
.+... ....+|++++|+|++.++..+..+.+..+...++|+++|+||+|+..
T Consensus 541 ~lr~~---g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 541 SLRKR---GGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIP 592 (1049)
T ss_pred HHHHh---hcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCcc
Confidence 22212 23448999999999988888888888888888999999999999964
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-10 Score=96.27 Aligned_cols=69 Identities=29% Similarity=0.397 Sum_probs=49.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCC-------CCceEEEEEEEeCCcEEEEeCCCCCCCc----cchHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-------PGLTQTINFFKLGTKLCLVDLPGYGFAY----AKEEVKDAW 161 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~-------~gtT~~~~~~~~~~~~~liDTpG~~~~~----~~~~~~~~~ 161 (243)
..++++|.+|+|||||+|+|++.. ...++.. ..||++...+..+ ...++||||+.... ..+++...+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~-~~~t~~i~~~~~~G~hTT~~~~l~~l~-~~~liDtPG~~~~~l~~~~~~~~~~~f 198 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSV-KQQVNDISSKLGLGKHTTTHVELFHFH-GGLIADTPGFNEFGLWHLEPEQLTQGF 198 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhh-hccccceeccCCCCCCcCCceEEEEcC-CcEEEeCCCccccCCCCCCHHHHHHhC
Confidence 478999999999999999999873 2333332 3388888877763 45899999997632 234455555
Q ss_pred HH
Q 026112 162 EE 163 (243)
Q Consensus 162 ~~ 163 (243)
.+
T Consensus 199 ~e 200 (245)
T TIGR00157 199 VE 200 (245)
T ss_pred HH
Confidence 44
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.3e-10 Score=90.79 Aligned_cols=111 Identities=14% Similarity=0.058 Sum_probs=73.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE-----EEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~-----~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
..+|+++|.+|+|||+|...+.+.. .+..+.+|..+.. .......+.++||+|..+ +..+..
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~---f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~----------~~~~~~ 69 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGR---FVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEE----------FSAMRD 69 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccc---cccccCCCccccceEEEEECCEEEEEEEEcCCCccc----------ChHHHH
Confidence 3689999999999999999988873 3444555544421 111234677999999433 233444
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH----hcCCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~~ 218 (243)
.|+.. .|+.++|++.++..+.+. ..+.+.+. ...+|+++|.||+|+...
T Consensus 70 ~~~~~---~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~ 123 (196)
T KOG0395|consen 70 LYIRN---GDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE 123 (196)
T ss_pred Hhhcc---CcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc
Confidence 55554 788899998776533333 23333332 235799999999999764
|
|
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.3e-11 Score=91.39 Aligned_cols=59 Identities=29% Similarity=0.328 Sum_probs=40.7
Q ss_pred CEEEEecCCCCchhHHHHHHhccccc--cccc----CCCCceEEEEEEEeCCcEEEEeCCCCCCC
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGV--VRTS----DKPGLTQTINFFKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~--~~vs----~~~gtT~~~~~~~~~~~~~liDTpG~~~~ 151 (243)
..++|+|.+|||||||+|+|++.... ..++ ....||+....+..+....++||||+.+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCcc
Confidence 58999999999999999999997321 1122 23347788888888778999999998764
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.4e-10 Score=87.96 Aligned_cols=57 Identities=37% Similarity=0.567 Sum_probs=49.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~ 148 (243)
...+++++|.+|+|||||+|+|.+. ....+++.+|+|++......+..+.++||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGR-HSASTSPSPGYTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC-CccccCCCCCeeeeeEEEEcCCCEEEEECcCC
Confidence 3468899999999999999999987 44667889999998887767778999999995
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.1e-09 Score=96.92 Aligned_cols=130 Identities=18% Similarity=0.240 Sum_probs=89.2
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccc-----------------------------cccccCCCCceEEEEEE---EeC
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-----------------------------VVRTSDKPGLTQTINFF---KLG 137 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~-----------------------------~~~vs~~~gtT~~~~~~---~~~ 137 (243)
......+++|..++|||||+..|+-.-. ....-...|+|.++... ...
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 3566889999999999999998873210 01111234567766332 235
Q ss_pred CcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCC-------hhhHHHHHHHHhcCC-cEEEE
Q 026112 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-------PRDHELISLMERSQT-KYQVV 209 (243)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~-------~~~~~~~~~l~~~~~-p~i~v 209 (243)
..++|+|+||+.+ ++...+.....+|+.++|+|++.+.- .+..++...++.+++ .++++
T Consensus 255 ~~~tliDaPGhkd-------------Fi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qliva 321 (603)
T KOG0458|consen 255 KIVTLIDAPGHKD-------------FIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVA 321 (603)
T ss_pred eeEEEecCCCccc-------------cchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEE
Confidence 6799999999754 45555666667999999999875422 233677788888886 48999
Q ss_pred eecCCCCC--hHHHHHHHHHHHHHH
Q 026112 210 LTKTDTVF--PIDVARRAMQIEESL 232 (243)
Q Consensus 210 ~nK~D~~~--~~~~~~~~~~l~~~l 232 (243)
+||+|+++ .+.+.+....+.-+|
T Consensus 322 iNKmD~V~Wsq~RF~eIk~~l~~fL 346 (603)
T KOG0458|consen 322 INKMDLVSWSQDRFEEIKNKLSSFL 346 (603)
T ss_pred eecccccCccHHHHHHHHHHHHHHH
Confidence 99999984 344555555555555
|
|
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.2e-10 Score=99.06 Aligned_cols=86 Identities=21% Similarity=0.142 Sum_probs=64.2
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe--------------------CCcEEEEeCCCCCCCc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGFAY 152 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~--------------------~~~~~liDTpG~~~~~ 152 (243)
.+++|+|.||+|||||+|+|++. ....++++|+||.++..... +..+.++|.||+....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~-~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNL-LGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCC-CccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 58999999999999999999998 43378999999988754321 1358999999987643
Q ss_pred cchHHHHHHHHHHHHHHhcccCccEEEEEEeCC
Q 026112 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (243)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~ 185 (243)
+.. ..+...++...+.+|++++|+|+.
T Consensus 82 s~g------~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 82 SKG------EGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred hcc------cCcchHHHHHHHhCCEEEEEEeCC
Confidence 221 123445555666699999999974
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.9e-09 Score=91.01 Aligned_cols=139 Identities=25% Similarity=0.352 Sum_probs=95.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccC--CCCceEE----------E---E---EEE-------------eCCc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD--KPGLTQT----------I---N---FFK-------------LGTK 139 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~--~~gtT~~----------~---~---~~~-------------~~~~ 139 (243)
...+|..+|.-..|||||..+|+|-.- ...+. ..|.|.. | . .+. .-..
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT-~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWT-DRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred cceEeeeeeecccchhhheehhhceee-echhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 457999999999999999999998420 00000 0111100 0 0 000 0136
Q ss_pred EEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC-CChhhHHHHHHHHhcC-CcEEEEeecCCCCC
Q 026112 140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQ-TKYQVVLTKTDTVF 217 (243)
Q Consensus 140 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-~~~~~~~~~~~l~~~~-~p~i~v~nK~D~~~ 217 (243)
+.++|.||+ +.++...++...--|..++|++++++ .+++..+.+-.+.-.+ ..+++|-||+|++.
T Consensus 88 VSfVDaPGH-------------e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~ 154 (415)
T COG5257 88 VSFVDAPGH-------------ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVS 154 (415)
T ss_pred EEEeeCCch-------------HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceec
Confidence 889999997 34555666666667999999998875 5566677776666666 46999999999999
Q ss_pred hHHHHHHHHHHHHHHhh---CCCccccCC
Q 026112 218 PIDVARRAMQIEESLKA---NNSLVQPVV 243 (243)
Q Consensus 218 ~~~~~~~~~~l~~~l~~---~~~~~~pi~ 243 (243)
.+...+..+++++++.. .+.++.||+
T Consensus 155 ~E~AlE~y~qIk~FvkGt~Ae~aPIIPiS 183 (415)
T COG5257 155 RERALENYEQIKEFVKGTVAENAPIIPIS 183 (415)
T ss_pred HHHHHHHHHHHHHHhcccccCCCceeeeh
Confidence 99888888888888765 344666664
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-09 Score=94.15 Aligned_cols=78 Identities=19% Similarity=0.158 Sum_probs=48.5
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
+..+.++||+|++.+.. .... .+|++++|++...+ .+....+. .......++|+||+|+.
T Consensus 148 g~d~viieT~Gv~qs~~---------~i~~-------~aD~vlvv~~p~~g---d~iq~~k~-gi~E~aDIiVVNKaDl~ 207 (332)
T PRK09435 148 GYDVILVETVGVGQSET---------AVAG-------MVDFFLLLQLPGAG---DELQGIKK-GIMELADLIVINKADGD 207 (332)
T ss_pred CCCEEEEECCCCccchh---------HHHH-------hCCEEEEEecCCch---HHHHHHHh-hhhhhhheEEeehhccc
Confidence 57899999999975211 1111 28999999763322 22211111 11223348999999999
Q ss_pred ChHHHHHHHHHHHHHHhh
Q 026112 217 FPIDVARRAMQIEESLKA 234 (243)
Q Consensus 217 ~~~~~~~~~~~l~~~l~~ 234 (243)
...........++..+..
T Consensus 208 ~~~~a~~~~~el~~~L~l 225 (332)
T PRK09435 208 NKTAARRAAAEYRSALRL 225 (332)
T ss_pred chhHHHHHHHHHHHHHhc
Confidence 776666666777777664
|
|
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.2e-09 Score=97.95 Aligned_cols=112 Identities=19% Similarity=0.238 Sum_probs=78.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccccccc-------C---------CCCceEEEE---EE-E----eCCcEEEEeCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS-------D---------KPGLTQTIN---FF-K----LGTKLCLVDLP 146 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs-------~---------~~gtT~~~~---~~-~----~~~~~~liDTp 146 (243)
...+|+++|+-++|||+|+..|....+ ...+ . ..|++.... .. . ...-+.++|||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tH-p~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTH-PDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceecc-ccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 456899999999999999999998642 1110 0 111221111 11 1 13468899999
Q ss_pred CCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 147 GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 147 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
|+.+. .....+....+|++++|+|+.+++.-+...+++...+...|+++|+||+|.+
T Consensus 206 GHVnF-------------~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 206 GHVNF-------------SDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred Ccccc-------------hHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHH
Confidence 98652 1222222233899999999999988888889998888899999999999975
|
|
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.2e-09 Score=82.18 Aligned_cols=111 Identities=24% Similarity=0.273 Sum_probs=73.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE------Ee--CCcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF------KL--GTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~------~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
++..++|.+-+|||||+..++.. +.+..++ -|..+.++ .. ..++.+|||+|. +.+..+
T Consensus 9 frlivigdstvgkssll~~ft~g-kfaelsd---ptvgvdffarlie~~pg~riklqlwdtagq----------erfrsi 74 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEG-KFAELSD---PTVGVDFFARLIELRPGYRIKLQLWDTAGQ----------ERFRSI 74 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcC-cccccCC---CccchHHHHHHHhcCCCcEEEEEEeeccch----------HHHHHH
Confidence 57889999999999999999987 3343332 12222221 11 347889999994 245677
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh-----cCCcEEEEeecCCCCChHH
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-----~~~p~i~v~nK~D~~~~~~ 220 (243)
.+.|++. +-++++|+|.++..+.+. ..+++..+. ..+-+.+|.+|+|+....+
T Consensus 75 tksyyrn---svgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq 133 (213)
T KOG0091|consen 75 TKSYYRN---SVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ 133 (213)
T ss_pred HHHHhhc---ccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhcc
Confidence 8888876 889999999876533322 123332221 1233789999999986544
|
|
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.9e-09 Score=94.34 Aligned_cols=113 Identities=17% Similarity=0.243 Sum_probs=79.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
+.+.|+++|+||+||||||..|.........+.+.|-..-+ ......++++.||.- +..++.
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvv--sgK~RRiTflEcp~D------------l~~miD---- 129 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVV--SGKTRRITFLECPSD------------LHQMID---- 129 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEe--ecceeEEEEEeChHH------------HHHHHh----
Confidence 45677899999999999999999863212233333311111 111346888999851 122222
Q ss_pred cccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCChHHH
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDV 221 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~~~~ 221 (243)
...-+|+|+++||+..++.-...++++.+..++.| ++-|+|+.|++.....
T Consensus 130 vaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~st 181 (1077)
T COG5192 130 VAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNPST 181 (1077)
T ss_pred HHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccChHH
Confidence 12238999999999999988899999999999987 7789999999965443
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-09 Score=92.67 Aligned_cols=58 Identities=31% Similarity=0.465 Sum_probs=45.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCC-------CceEEEEEEEeCCcEEEEeCCCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLTQTINFFKLGTKLCLVDLPGYGF 150 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~-------gtT~~~~~~~~~~~~~liDTpG~~~ 150 (243)
+..++++|.+|+|||||+|+|++.. ...++..+ .||+....+..+....++||||+.+
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~-~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~ 228 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDL-ELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSS 228 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCc-CCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCc
Confidence 4578999999999999999999873 23344333 3788887777665679999999974
|
|
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.2e-09 Score=84.85 Aligned_cols=89 Identities=18% Similarity=0.107 Sum_probs=59.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc-ccccccCCCCceEEEEEEEe------CCcEEEEeCCCCCCCccch-HHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYAKE-EVKDAWE 162 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~-~~~~vs~~~gtT~~~~~~~~------~~~~~liDTpG~~~~~~~~-~~~~~~~ 162 (243)
+...|+++|++++|||||+|.|++.. ..........||+.+..+.. +..+.++||||+.+....+ .....+.
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 45688999999999999999999982 22334455778888765532 3679999999998754322 1111111
Q ss_pred HHHHHHHhcccCccEEEEEEeCC
Q 026112 163 ELVKEYVSTRVSLKRVCLLIDTK 185 (243)
Q Consensus 163 ~~~~~~~~~~~~~d~v~~vvd~~ 185 (243)
.+.. + -++++++.++..
T Consensus 86 ~l~~--l----lss~~i~n~~~~ 102 (224)
T cd01851 86 ALAT--L----LSSVLIYNSWET 102 (224)
T ss_pred HHHH--H----HhCEEEEeccCc
Confidence 1111 1 178888888765
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-08 Score=86.63 Aligned_cols=136 Identities=18% Similarity=0.249 Sum_probs=100.7
Q ss_pred CCCCCEEEEecCCCCchhHHHHHHhccc--------------ccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCC
Q 026112 89 APDLPEIAFAGRSNVGKSSMLNALTRQW--------------GVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 89 ~~~~~~I~ivG~~naGKSSLin~L~~~~--------------~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~ 151 (243)
.....+|+-+|.-..|||||.-+++.-. +.+.-....|.|...-.. .....+--+||||+.
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHA-- 128 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHA-- 128 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchH--
Confidence 3456799999999999999999888521 111122244666654222 236678899999984
Q ss_pred ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCChHH-HHHHHHHHH
Q 026112 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPID-VARRAMQIE 229 (243)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~~~-~~~~~~~l~ 229 (243)
.+++..+.....-|+.++|+.+.++..++..+.+=+.++.+++ +++.+||.|+++..+ +.-.-.+++
T Consensus 129 -----------DYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~R 197 (449)
T KOG0460|consen 129 -----------DYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIR 197 (449)
T ss_pred -----------HHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHH
Confidence 3777788888889999999999999888888888777787875 778899999995444 444446788
Q ss_pred HHHhhCCC
Q 026112 230 ESLKANNS 237 (243)
Q Consensus 230 ~~l~~~~~ 237 (243)
+.+.+++.
T Consensus 198 ElLse~gf 205 (449)
T KOG0460|consen 198 ELLSEFGF 205 (449)
T ss_pred HHHHHcCC
Confidence 88888764
|
|
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.5e-09 Score=80.19 Aligned_cols=112 Identities=17% Similarity=0.312 Sum_probs=73.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCC-CCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~-~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
.-+++++|-.|||||||++.|-.+ +....-+. .+|+....+. +..++.+|.-|+.. .++.|..++..
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdD-rl~qhvPTlHPTSE~l~Ig--~m~ftt~DLGGH~q------Arr~wkdyf~~--- 87 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDD-RLGQHVPTLHPTSEELSIG--GMTFTTFDLGGHLQ------ARRVWKDYFPQ--- 87 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccc-cccccCCCcCCChHHheec--CceEEEEccccHHH------HHHHHHHHHhh---
Confidence 348999999999999999999877 43332222 2233333332 67899999999632 23445444332
Q ss_pred cccCccEEEEEEeCCCC--CChhhHHHHHHH---HhcCCcEEEEeecCCCCChH
Q 026112 171 TRVSLKRVCLLIDTKWG--VKPRDHELISLM---ERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l---~~~~~p~i~v~nK~D~~~~~ 219 (243)
+|.+++.+|+-+. +.+...++-..+ .-.+.|+++..||+|...+.
T Consensus 88 ----v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 88 ----VDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred ----hceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc
Confidence 8999999997653 222222222222 22479999999999998654
|
|
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.6e-09 Score=87.72 Aligned_cols=148 Identities=20% Similarity=0.252 Sum_probs=98.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccc--cCCCC-----ceEEEEEEEeCCcEEEEeCCCCCCCccchHH----HHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRT--SDKPG-----LTQTINFFKLGTKLCLVDLPGYGFAYAKEEV----KDA 160 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~v--s~~~g-----tT~~~~~~~~~~~~~liDTpG~~~~~~~~~~----~~~ 160 (243)
.++|+-+|.+|.|||||++.|++....... ...|+ .|-+.+...+..+++++||.||++....+.. -+.
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 479999999999999999999986311111 12222 2333444444568999999999987544322 112
Q ss_pred HHHHHHHHHh------------cccCccEEEEEEeC-CCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHH
Q 026112 161 WEELVKEYVS------------TRVSLKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 227 (243)
Q Consensus 161 ~~~~~~~~~~------------~~~~~d~v~~vvd~-~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~ 227 (243)
+.+-++.|+. .-...++++|.|.. .+++...+.-.++.+.. .+.+|-|+-|+|.....++.+....
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds-kVNIIPvIAKaDtisK~eL~~FK~k 200 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS-KVNIIPVIAKADTISKEELKRFKIK 200 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh-hhhhHHHHHHhhhhhHHHHHHHHHH
Confidence 2222222221 11236777777764 44566666655555544 5788999999999999999999999
Q ss_pred HHHHHhhCCCccc
Q 026112 228 IEESLKANNSLVQ 240 (243)
Q Consensus 228 l~~~l~~~~~~~~ 240 (243)
+...+..++..++
T Consensus 201 imsEL~sngv~IY 213 (406)
T KOG3859|consen 201 IMSELVSNGVQIY 213 (406)
T ss_pred HHHHHHhcCceee
Confidence 9999998887665
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.3e-09 Score=90.63 Aligned_cols=72 Identities=26% Similarity=0.404 Sum_probs=51.3
Q ss_pred CEEEEecCCCCchhHHHHHHhcccc--cccccC----CCCceEEEEEEEeCCcEEEEeCCCCCCC----ccchHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWG--VVRTSD----KPGLTQTINFFKLGTKLCLVDLPGYGFA----YAKEEVKDAWE 162 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~--~~~vs~----~~gtT~~~~~~~~~~~~~liDTpG~~~~----~~~~~~~~~~~ 162 (243)
...+++|.+|+|||||+|+|..... ...+|. ...||+....+..+..-.++|||||.+- ...+++...+.
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~l~~~~~e~l~~~F~ 244 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLGLAHLEPEDLVQAFP 244 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCccCcccCCHHHHHHHhH
Confidence 4778999999999999999998521 112222 3348888888888777899999998763 23445555554
Q ss_pred HH
Q 026112 163 EL 164 (243)
Q Consensus 163 ~~ 164 (243)
++
T Consensus 245 ef 246 (301)
T COG1162 245 EF 246 (301)
T ss_pred HH
Confidence 44
|
|
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.9e-10 Score=85.77 Aligned_cols=115 Identities=19% Similarity=0.179 Sum_probs=74.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc---ccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~---~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++++++|.-++||||+|.+.+..- +....-...++-++......+....+|||+|..+ +..+...|
T Consensus 20 aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeE----------fDaItkAy 89 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEE----------FDAITKAY 89 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchh----------HHHHHHHH
Confidence 4789999999999999999999531 1111112222333333333355678999999643 45677788
Q ss_pred HhcccCccEEEEEEeCCCCCChh-hHHHHHHHHh--cCCcEEEEeecCCCCChH
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER--SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~--~~~p~i~v~nK~D~~~~~ 219 (243)
++. +...++|+..++..+.+ ..+|.+.+.. ..+|.++|-||+|+++..
T Consensus 90 yrg---aqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds 140 (246)
T KOG4252|consen 90 YRG---AQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDS 140 (246)
T ss_pred hcc---ccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhh
Confidence 877 66777787766542222 2344444433 369999999999998654
|
|
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-08 Score=76.12 Aligned_cols=113 Identities=19% Similarity=0.182 Sum_probs=74.3
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCC------ceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG------LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~g------tT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
.++..++|.-|+|||.|+..++... ...+.|. -|+-+....-..++.+|||+|. +.+....
T Consensus 11 ifkyiiigdmgvgkscllhqftekk---fmadcphtigvefgtriievsgqkiklqiwdtagq----------erfravt 77 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKK---FMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ----------ERFRAVT 77 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHH---HhhcCCcccceecceeEEEecCcEEEEEEeecccH----------HHHHHHH
Confidence 5688999999999999999999873 2333332 2333333323467899999994 2356677
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhcC---CcEEEEeecCCCCChHH
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQ---TKYQVVLTKTDTVFPID 220 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~~---~p~i~v~nK~D~~~~~~ 220 (243)
+.|++. +-..++|.|.....+-.. ..|+...+.+. .-++++.||+|+-...+
T Consensus 78 rsyyrg---aagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrd 133 (215)
T KOG0097|consen 78 RSYYRG---AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRD 133 (215)
T ss_pred HHHhcc---ccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhccc
Confidence 778777 677888999876533222 13333333333 34788999999975443
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.6e-09 Score=86.06 Aligned_cols=73 Identities=22% Similarity=0.205 Sum_probs=34.5
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcc--cCccEEEEEEeCCCCCChhhH--H---HHHHHHhcCCcEEEEee
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR--VSLKRVCLLIDTKWGVKPRDH--E---LISLMERSQTKYQVVLT 211 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~v~~vvd~~~~~~~~~~--~---~~~~l~~~~~p~i~v~n 211 (243)
.+.++||||..+- - .+........... ...-++++++|+.....+... . .+....+.+.|.+.|+|
T Consensus 92 ~y~l~DtPGQiEl------f-~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvls 164 (238)
T PF03029_consen 92 DYLLFDTPGQIEL------F-THSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLS 164 (238)
T ss_dssp SEEEEE--SSHHH------H-HHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE-
T ss_pred cEEEEeCCCCEEE------E-EechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeee
Confidence 7999999996431 1 1111222222222 224568899998753332221 1 11222346899999999
Q ss_pred cCCCCCh
Q 026112 212 KTDTVFP 218 (243)
Q Consensus 212 K~D~~~~ 218 (243)
|+|+..+
T Consensus 165 K~Dl~~~ 171 (238)
T PF03029_consen 165 KIDLLSK 171 (238)
T ss_dssp -GGGS-H
T ss_pred ccCcccc
Confidence 9999983
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.9e-10 Score=96.00 Aligned_cols=60 Identities=33% Similarity=0.513 Sum_probs=55.7
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCC
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 150 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~ 150 (243)
....+|+|+|.||+||||+||+|... +...+++.||.|+.++..+.+..+.|+|.||+.-
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~-k~C~vg~~pGvT~smqeV~Ldk~i~llDsPgiv~ 309 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRR-KACNVGNVPGVTRSMQEVKLDKKIRLLDSPGIVP 309 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHh-ccccCCCCccchhhhhheeccCCceeccCCceee
Confidence 45779999999999999999999999 7799999999999999999999999999999754
|
|
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.5e-08 Score=76.76 Aligned_cols=120 Identities=19% Similarity=0.225 Sum_probs=78.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe------CCcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~------~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
...+|+++|.-++|||+++..|+-.++ ....+...|..|+..... ...+.+.||+|+.+. +. ++
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~-~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~--~~-------eL 77 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNH-VPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG--QQ-------EL 77 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccC-CCCCccccchhhheeEeeecCCChhheEEEeecccccCc--hh-------hh
Confidence 356899999999999999988765422 444555556555543332 246889999998752 22 23
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhhHHHH-HHHHhc----CCcEEEEeecCCCCChHHHHH
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI-SLMERS----QTKYQVVLTKTDTVFPIDVAR 223 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~-~~l~~~----~~p~i~v~nK~D~~~~~~~~~ 223 (243)
-+.|... +|..++|.+..+.-+.+..+++ +++... .+|++++.||+|+.++.+...
T Consensus 78 prhy~q~---aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~ 138 (198)
T KOG3883|consen 78 PRHYFQF---ADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDM 138 (198)
T ss_pred hHhHhcc---CceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCH
Confidence 3334333 8999999987654333333333 222222 479999999999987766543
|
|
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.7e-08 Score=101.10 Aligned_cols=126 Identities=20% Similarity=0.194 Sum_probs=78.1
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccc-ccc-----ccCCCCceEEEEEEEeCCcEEEEeCCCCCCC-c-cchHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VVR-----TSDKPGLTQTINFFKLGTKLCLVDLPGYGFA-Y-AKEEVKDAW 161 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~-~~~-----vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~-~-~~~~~~~~~ 161 (243)
...|..+++|++|+||||+|+.- |... ... .....+-|++|..+. .....++||+|-.-+ . ..+.....|
T Consensus 109 Y~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf-~~~avliDtaG~y~~~~~~~~~~~~~W 186 (1169)
T TIGR03348 109 YDLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWF-TDEAVLIDTAGRYTTQDSDPEEDAAAW 186 (1169)
T ss_pred hcCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEe-cCCEEEEcCCCccccCCCcccccHHHH
Confidence 46789999999999999999766 3211 010 011234466676654 456779999994322 1 122335567
Q ss_pred HHHHHHH--HhcccCccEEEEEEeCCCCCChhhH---HH-------HHHH-Hh--cCCcEEEEeecCCCCC
Q 026112 162 EELVKEY--VSTRVSLKRVCLLIDTKWGVKPRDH---EL-------ISLM-ER--SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 162 ~~~~~~~--~~~~~~~d~v~~vvd~~~~~~~~~~---~~-------~~~l-~~--~~~p~i~v~nK~D~~~ 217 (243)
..++... .+..+..++||+++|..+-+..... .. ++.+ .. ...||++|+||||++.
T Consensus 187 ~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 7776633 3345679999999997653322111 11 1212 12 2589999999999874
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.6e-09 Score=80.56 Aligned_cols=116 Identities=16% Similarity=0.086 Sum_probs=74.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccccc---ccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR---TSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~---vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.-=+|||||+=+.+....... +-...+.++.++...-...+.||||+|.. .++.+..-|
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQE----------rfHALGPIY 82 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQE----------RFHALGPIY 82 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchH----------hhhccCceE
Confidence 47999999999999999877776521111 11122344444444334578899999952 344555555
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCChHH
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~~~~ 220 (243)
++. ++++++|+|.++.-+.+. ..|...++.. .+.+++|.||+|+-+...
T Consensus 83 YRg---SnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~ 135 (218)
T KOG0088|consen 83 YRG---SNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQ 135 (218)
T ss_pred EeC---CCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhh
Confidence 555 899999999886532222 3444444433 367899999999965443
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-08 Score=87.40 Aligned_cols=57 Identities=30% Similarity=0.402 Sum_probs=43.5
Q ss_pred CEEEEecCCCCchhHHHHHHhccccccccc-------CCCCceEEEEEEEeCCcEEEEeCCCCCC
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-------DKPGLTQTINFFKLGTKLCLVDLPGYGF 150 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs-------~~~gtT~~~~~~~~~~~~~liDTpG~~~ 150 (243)
..++++|++|+|||||+|+|++... ..++ ...+||++...+.......++||||+.+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~-~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~ 225 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD-LATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFRE 225 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh-ccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCc
Confidence 5899999999999999999998732 2222 2334788887777654568999999965
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-08 Score=90.64 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=73.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCC-CCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~-~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
...+|+++|..|+||||||-+|++.+....+-+. +-++....+.+......++||..-.+ ..+ .+..-
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~--~~~--------~l~~E- 76 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSD--DRL--------CLRKE- 76 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccc--hhH--------HHHHH-
Confidence 3569999999999999999999998532222222 22333334444456689999985321 111 11111
Q ss_pred hcccCccEEEEEEeCCCC--CChhhHHHHHHHHhc-----CCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWG--VKPRDHELISLMERS-----QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~~-----~~p~i~v~nK~D~~~~ 218 (243)
.+.+|+|++|.+.+++ +......|+-.+.+. ++|+|+|.||+|+...
T Consensus 77 --irkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~ 130 (625)
T KOG1707|consen 77 --IRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDN 130 (625)
T ss_pred --HhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccc
Confidence 1228999999976653 223334666666553 5899999999999754
|
|
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.4e-08 Score=90.65 Aligned_cols=117 Identities=15% Similarity=0.265 Sum_probs=76.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE---------------------------------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--------------------------------------- 131 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--------------------------------------- 131 (243)
...+|+|.|.+++||||++|+++.. ++. .+....||-..
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~-klL-P~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHK-KLL-PSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHH-hhC-cccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 4569999999999999999999975 211 11111111100
Q ss_pred -------EEE-Ee------CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHH
Q 026112 132 -------NFF-KL------GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS 197 (243)
Q Consensus 132 -------~~~-~~------~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~ 197 (243)
.++ +. ..++.++|.||+.-+...+ ..+..+ ..++|++++|+.+...++.....++.
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~t-------swid~~---cldaDVfVlV~NaEntlt~sek~Ff~ 255 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELT-------SWIDSF---CLDADVFVLVVNAENTLTLSEKQFFH 255 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchhhh-------HHHHHH---hhcCCeEEEEecCccHhHHHHHHHHH
Confidence 001 00 2378999999986532222 222222 23499999999998777777777777
Q ss_pred HHHhcCCcEEEEeecCCCCChH
Q 026112 198 LMERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 198 ~l~~~~~p~i~v~nK~D~~~~~ 219 (243)
.....+..+.++-||+|.....
T Consensus 256 ~vs~~KpniFIlnnkwDasase 277 (749)
T KOG0448|consen 256 KVSEEKPNIFILNNKWDASASE 277 (749)
T ss_pred HhhccCCcEEEEechhhhhccc
Confidence 6666555577888999988653
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-08 Score=89.17 Aligned_cols=130 Identities=22% Similarity=0.252 Sum_probs=85.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccc-------------ccccCCCCceEEEEEEEe--------CCcEEEEeCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-------------VRTSDKPGLTQTINFFKL--------GTKLCLVDLPGYG 149 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~-------------~~vs~~~gtT~~~~~~~~--------~~~~~liDTpG~~ 149 (243)
+..+..|+-+-..|||||-.+|+..... -......|.|...+.... .+.+.+|||||+.
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 4557788888899999999999875310 012224566655432221 2568899999986
Q ss_pred CCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHH
Q 026112 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (243)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~ 229 (243)
+. .-++++ .++. |.+.++|+|++.++..+...-.-..-..+.-++-|+||+|+... +..+....++
T Consensus 88 DF--sYEVSR--------SLAA---CEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~A-dpervk~eIe 153 (603)
T COG0481 88 DF--SYEVSR--------SLAA---CEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAA-DPERVKQEIE 153 (603)
T ss_pred ce--EEEehh--------hHhh---CCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCC-CHHHHHHHHH
Confidence 62 112222 2222 89999999999998777654444444567899999999999864 4555566666
Q ss_pred HHHhh
Q 026112 230 ESLKA 234 (243)
Q Consensus 230 ~~l~~ 234 (243)
+.++-
T Consensus 154 ~~iGi 158 (603)
T COG0481 154 DIIGI 158 (603)
T ss_pred HHhCC
Confidence 66554
|
|
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.2e-08 Score=84.79 Aligned_cols=132 Identities=20% Similarity=0.194 Sum_probs=94.4
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccccccc-------------ccCCCCceEEEEEEEe--------------------
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVR-------------TSDKPGLTQTINFFKL-------------------- 136 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~-------------vs~~~gtT~~~~~~~~-------------------- 136 (243)
+....|+..|.-++|||||.-+|+.-. ... ..-..|-|.++.+.-.
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~-~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGR-LDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecC-CCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 466788999999999999999887531 000 0001233444433211
Q ss_pred ------CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcc--cCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEE
Q 026112 137 ------GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR--VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQV 208 (243)
Q Consensus 137 ------~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~ 208 (243)
+.-+.++||-|+.- +++..++.. +..|..++++.+.++++....+.+........|+++
T Consensus 194 ~vv~~aDklVsfVDtvGHEp-------------wLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviV 260 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEP-------------WLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIV 260 (527)
T ss_pred HhhhhcccEEEEEecCCccH-------------HHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEE
Confidence 13578999999731 222222221 348999999999999999999999999999999999
Q ss_pred EeecCCCCChHHHHHHHHHHHHHHhhC
Q 026112 209 VLTKTDTVFPIDVARRAMQIEESLKAN 235 (243)
Q Consensus 209 v~nK~D~~~~~~~~~~~~~l~~~l~~~ 235 (243)
|+||+|+.+.+.+....+++...+...
T Consensus 261 vvTK~D~~~ddr~~~v~~ei~~~Lk~v 287 (527)
T COG5258 261 VVTKIDMVPDDRFQGVVEEISALLKRV 287 (527)
T ss_pred EEEecccCcHHHHHHHHHHHHHHHHHh
Confidence 999999999988888888877766653
|
|
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-09 Score=93.76 Aligned_cols=62 Identities=31% Similarity=0.553 Sum_probs=53.5
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~ 152 (243)
...+.|+|||+||+||||+||+|... .++.+.++||-|.--++..+-..+.+|||||+..+.
T Consensus 305 kkqISVGfiGYPNvGKSSiINTLR~K-kVCkvAPIpGETKVWQYItLmkrIfLIDcPGvVyps 366 (572)
T KOG2423|consen 305 KKQISVGFIGYPNVGKSSIINTLRKK-KVCKVAPIPGETKVWQYITLMKRIFLIDCPGVVYPS 366 (572)
T ss_pred ccceeeeeecCCCCchHHHHHHHhhc-ccccccCCCCcchHHHHHHHHhceeEecCCCccCCC
Confidence 45679999999999999999999999 889999999998866665566789999999986543
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.7e-08 Score=79.63 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=24.7
Q ss_pred CCCCCCCEEEEecCCCCchhHHHHHHhcc
Q 026112 87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 87 ~~~~~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+...+.+.|+|+|++|+|||||++.++..
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 33456789999999999999999999865
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-08 Score=76.75 Aligned_cols=128 Identities=18% Similarity=0.085 Sum_probs=76.3
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE------EE-e---------CCcEEEEeCCCCCCCccchH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF------FK-L---------GTKLCLVDLPGYGFAYAKEE 156 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~------~~-~---------~~~~~liDTpG~~~~~~~~~ 156 (243)
++.+.+|.+|+||||++-..+....... --+|..+.+ +. . ...+.+|||+|..
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~q----FIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQE------- 78 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQ----FISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQE------- 78 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccce----eEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHH-------
Confidence 3566789999999999988776521000 001222211 11 1 1368899999942
Q ss_pred HHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhH---HHHHHHHhc----CCcEEEEeecCCCCChHHHHHHHHHHH
Q 026112 157 VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH---ELISLMERS----QTKYQVVLTKTDTVFPIDVARRAMQIE 229 (243)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~---~~~~~l~~~----~~p~i~v~nK~D~~~~~~~~~~~~~l~ 229 (243)
.+..+...+++. +-+.++++|.+.. +... .|+..++.+ +.-++++.||+|+.+...+.+ +...
T Consensus 79 ---RFRSLTTAFfRD---AMGFlLiFDlT~e--qSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~--~qa~ 148 (219)
T KOG0081|consen 79 ---RFRSLTTAFFRD---AMGFLLIFDLTSE--QSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSE--DQAA 148 (219)
T ss_pred ---HHHHHHHHHHHh---hccceEEEeccch--HHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhH--HHHH
Confidence 344555555554 7788999997643 3333 444444432 344899999999987655433 3344
Q ss_pred HHHhhCCCcccc
Q 026112 230 ESLKANNSLVQP 241 (243)
Q Consensus 230 ~~l~~~~~~~~p 241 (243)
+....++.+.+.
T Consensus 149 ~La~kyglPYfE 160 (219)
T KOG0081|consen 149 ALADKYGLPYFE 160 (219)
T ss_pred HHHHHhCCCeee
Confidence 555556666554
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.9e-07 Score=80.40 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~ 114 (243)
....|+|+|++|+|||||++.|..
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999875
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.7e-08 Score=78.69 Aligned_cols=119 Identities=22% Similarity=0.282 Sum_probs=79.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---C-CcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---G-TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.+|+++|.+|+||||+=..++.. ..+.-...+|-|.|+...+. | .-+.+||+-|.. .+++.|
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~n-y~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe-------------~fmen~ 70 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFAN-YIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQE-------------EFMENY 70 (295)
T ss_pred ceEEEeccCCCCccccchhhhhh-hhhhhhhccCCcceeeehhhhhhhhheeehhccCCcH-------------HHHHHH
Confidence 58999999999999998888876 34555667788888765543 3 567799999952 244444
Q ss_pred Hhcc-----cCccEEEEEEeCCCCCChhhHHH----HHHHHhc--CCcEEEEeecCCCCChHHHHHHH
Q 026112 169 VSTR-----VSLKRVCLLIDTKWGVKPRDHEL----ISLMERS--QTKYQVVLTKTDTVFPIDVARRA 225 (243)
Q Consensus 169 ~~~~-----~~~d~v~~vvd~~~~~~~~~~~~----~~~l~~~--~~p~i~v~nK~D~~~~~~~~~~~ 225 (243)
+... ...+++++|+|++...-..|... ++.+.+. ...+.+.++|.|++..+......
T Consensus 71 ~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if 138 (295)
T KOG3886|consen 71 LSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIF 138 (295)
T ss_pred HhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHH
Confidence 4422 23788999999875433344332 2333222 34688899999999766544433
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.6e-07 Score=81.72 Aligned_cols=118 Identities=19% Similarity=0.226 Sum_probs=67.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc-----ccccccC--CC-C--------ce-EEEEEEE-------------------
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSD--KP-G--------LT-QTINFFK------------------- 135 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~-----~~~~vs~--~~-g--------tT-~~~~~~~------------------- 135 (243)
...|+++|.+|+||||++..|.... ++..++. +. + .. ..+.++.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 3478999999999999999887311 2222211 00 0 00 0111111
Q ss_pred -eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCC
Q 026112 136 -LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 214 (243)
Q Consensus 136 -~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D 214 (243)
.+..+.||||||.... .+... .+ +..+. .....+.+++|+|+..+ +......+.+...-.+.-+|+||.|
T Consensus 180 ~~~~DvViIDTaGr~~~--d~~lm---~E-l~~i~-~~~~p~e~lLVlda~~G--q~a~~~a~~F~~~~~~~g~IlTKlD 250 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQ--EDSLF---EE-MLQVA-EAIQPDNIIFVMDGSIG--QAAEAQAKAFKDSVDVGSVIITKLD 250 (429)
T ss_pred hCCCCEEEEECCCCCcc--hHHHH---HH-HHHHh-hhcCCcEEEEEeccccC--hhHHHHHHHHHhccCCcEEEEECcc
Confidence 1468999999996431 11111 11 11222 12246889999998765 3344455555544456788899999
Q ss_pred CCCh
Q 026112 215 TVFP 218 (243)
Q Consensus 215 ~~~~ 218 (243)
....
T Consensus 251 ~~ar 254 (429)
T TIGR01425 251 GHAK 254 (429)
T ss_pred CCCC
Confidence 7643
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.1e-08 Score=84.06 Aligned_cols=137 Identities=23% Similarity=0.299 Sum_probs=96.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc-----cccccc-------CCCCceEEEEEEEe-----------------------
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTS-------DKPGLTQTINFFKL----------------------- 136 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~-----~~~~vs-------~~~gtT~~~~~~~~----------------------- 136 (243)
..+++++|.-.+|||||+-.|++.+ ..+... -..|.|..+.....
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 4589999999999999999998642 001100 01223332211110
Q ss_pred -CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc--ccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecC
Q 026112 137 -GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST--RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKT 213 (243)
Q Consensus 137 -~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~ 213 (243)
..-++++|.+|... +....+.. .-..|..++|+.+..++.....+.+..+..+++|+.++++|+
T Consensus 247 SSKlvTfiDLAGh~k-------------Y~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~ 313 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAK-------------YQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKM 313 (591)
T ss_pred hcceEEEeecccchh-------------hheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEee
Confidence 23588999999643 11111100 012688999999999988888999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHhhCCCcccc
Q 026112 214 DTVFPIDVARRAMQIEESLKANNSLVQP 241 (243)
Q Consensus 214 D~~~~~~~~~~~~~l~~~l~~~~~~~~p 241 (243)
|+.++..+.+...++.+.+...+....|
T Consensus 314 Dl~~~~~~~~tv~~l~nll~~~Gc~kvp 341 (591)
T KOG1143|consen 314 DLVDRQGLKKTVKDLSNLLAKAGCTKVP 341 (591)
T ss_pred ccccchhHHHHHHHHHHHHhhcCccccc
Confidence 9999999998888998888887775554
|
|
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-07 Score=92.88 Aligned_cols=127 Identities=20% Similarity=0.224 Sum_probs=80.3
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccccc-----ccccCCCCceEEEEEEEeCCcEEEEeCCCC-CCC-ccchHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV-----VRTSDKPGLTQTINFFKLGTKLCLVDLPGY-GFA-YAKEEVKDAWE 162 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~-----~~vs~~~gtT~~~~~~~~~~~~~liDTpG~-~~~-~~~~~~~~~~~ 162 (243)
.+.|..++||++|+||||++..---.-.. ...-..+| |++|.. ..+..-.+|||+|= ... ...+.....|.
T Consensus 123 yeLPWy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~~cdw-wf~deaVlIDtaGry~~q~s~~~~~~~~W~ 200 (1188)
T COG3523 123 YELPWYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TRNCDW-WFTDEAVLIDTAGRYITQDSADEVDRAEWL 200 (1188)
T ss_pred hcCCceEEecCCCCCcchHHhcccccCcchhhhccccccCCC-CcccCc-ccccceEEEcCCcceecccCcchhhHHHHH
Confidence 57899999999999999998543221111 11222334 788873 34677899999993 222 23344567777
Q ss_pred HHHH--HHHhcccCccEEEEEEeCCCCCChhhH---HHHHHHH----------hcCCcEEEEeecCCCCCh
Q 026112 163 ELVK--EYVSTRVSLKRVCLLIDTKWGVKPRDH---ELISLME----------RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 163 ~~~~--~~~~~~~~~d~v~~vvd~~~~~~~~~~---~~~~~l~----------~~~~p~i~v~nK~D~~~~ 218 (243)
.++. +.++..+..|+|++.+|..+-.+.... .....+. +...|+++++||.|+...
T Consensus 201 ~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 201 GFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence 6643 333455679999999997653333222 1122221 236899999999999863
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.3e-09 Score=86.58 Aligned_cols=118 Identities=22% Similarity=0.318 Sum_probs=62.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc-----ccc-----cccCCCC------------ceEEE-EE-EE-----------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVV-----RTSDKPG------------LTQTI-NF-FK----------- 135 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~-----~~~-----~vs~~~g------------tT~~~-~~-~~----------- 135 (243)
+.++|+|.|+||+|||||+++|.... +++ ..|+..| ...|. .| ..
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 35699999999999999999998632 111 1223222 01111 00 00
Q ss_pred ------------eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC--CChhhHHHHHHHHh
Q 026112 136 ------------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMER 201 (243)
Q Consensus 136 ------------~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~ 201 (243)
.|+.+.|+.|.|.+.. ++ ... .-+|.+++|+-+..+ ++-...-+++
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQs----E~-----~I~-------~~aD~~v~v~~Pg~GD~iQ~~KaGimE---- 167 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQS----EV-----DIA-------DMADTVVLVLVPGLGDEIQAIKAGIME---- 167 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTH----HH-----HHH-------TTSSEEEEEEESSTCCCCCTB-TTHHH----
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCcc----HH-----HHH-------HhcCeEEEEecCCCccHHHHHhhhhhh----
Confidence 1579999999998751 11 111 128999999875544 2222223333
Q ss_pred cCCcEEEEeecCCCCChHHHHHHHHHHHHHHh
Q 026112 202 SQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 233 (243)
Q Consensus 202 ~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~ 233 (243)
+.-++|+||+|+.... ....+++..+.
T Consensus 168 --iaDi~vVNKaD~~gA~---~~~~~l~~~l~ 194 (266)
T PF03308_consen 168 --IADIFVVNKADRPGAD---RTVRDLRSMLH 194 (266)
T ss_dssp --H-SEEEEE--SHHHHH---HHHHHHHHHHH
T ss_pred --hccEEEEeCCChHHHH---HHHHHHHHHHh
Confidence 3558999999954433 33444454443
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.2e-07 Score=84.42 Aligned_cols=112 Identities=19% Similarity=0.170 Sum_probs=80.1
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE------------------EEEEeCCcEEEEeCCCCCCC
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI------------------NFFKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~------------------~~~~~~~~~~liDTpG~~~~ 151 (243)
....+|+++-.-..|||||...|.... ..+-+.-+|+-|-. .....+..+.+||+||+.+.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asn-gvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASN-GVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhc-cEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence 355689999999999999999999874 23333344432221 11123678999999998662
Q ss_pred ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCC
Q 026112 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDT 215 (243)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~ 215 (243)
. .-+..... -+|..++++|+-+++..+...++...-..+...++|+||+|.
T Consensus 86 ~----------sevssas~---l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 86 S----------SEVSSASR---LSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred h----------hhhhhhhh---hcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhh
Confidence 1 11111111 189999999999999999988888776668899999999993
|
|
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.9e-07 Score=80.50 Aligned_cols=126 Identities=24% Similarity=0.366 Sum_probs=76.3
Q ss_pred CCCCCEEEEecCCCCchhHHHHHHhcccccccccC---------------------------------------------
Q 026112 89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD--------------------------------------------- 123 (243)
Q Consensus 89 ~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~--------------------------------------------- 123 (243)
....|+|+++|..++||||.+..+... ++-.-+.
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqA-RIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~ 383 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQA-RIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI 383 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHh-ccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence 367899999999999999999999864 2111100
Q ss_pred --------CCCceEEEEEEE--e-C---CcEEEEeCCCCCCCccc---hHHHHHHHHHHHHHHhcccCccEEEEEEe-CC
Q 026112 124 --------KPGLTQTINFFK--L-G---TKLCLVDLPGYGFAYAK---EEVKDAWEELVKEYVSTRVSLKRVCLLID-TK 185 (243)
Q Consensus 124 --------~~gtT~~~~~~~--~-~---~~~~liDTpG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~v~~vvd-~~ 185 (243)
..|+|....... + | ....++|.||+..+... .+..+.+..+...|+. +.+.|+++|- .+
T Consensus 384 E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~---NPNAIILCIQDGS 460 (980)
T KOG0447|consen 384 ELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQ---NPNAIILCIQDGS 460 (980)
T ss_pred HHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhc---CCCeEEEEeccCC
Confidence 011232221111 1 2 36889999998765321 1223334455555554 4888988874 32
Q ss_pred CCC-ChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 186 WGV-KPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 186 ~~~-~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
-.. ...--.+...+..++.+.|+|+||.|+.+.
T Consensus 461 VDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 461 VDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred cchhhhhHHHHHHhcCCCCCeeEEEEeecchhhh
Confidence 111 111234555566778999999999998753
|
|
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.2e-07 Score=74.07 Aligned_cols=114 Identities=21% Similarity=0.238 Sum_probs=62.1
Q ss_pred CEEEEecCCCCchhHHHHHHhccccc---ccccCCCC-------------c-eEEEE---------------E-------
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGV---VRTSDKPG-------------L-TQTIN---------------F------- 133 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~---~~vs~~~g-------------t-T~~~~---------------~------- 133 (243)
|.++++|..|+|||||++.+++.... ....+..| . ..... .
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~~~d~~~~~~~~~~v~~l~~GCiCC~~~~~l~~~l~~l~~~~ 80 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLERL 80 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCccchhHHHHhCCCceEEEeCCCEeEeeCchhHHHHHHHHHHHH
Confidence 46789999999999999998865210 00000001 0 00000 0
Q ss_pred --EEeCCcEEEEeCCCCCCCccchHHHHHHHHH-HHHHHhcccCccEEEEEEeCCCCCChh--hHHHHHHHHhcCCcEEE
Q 026112 134 --FKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL-VKEYVSTRVSLKRVCLLIDTKWGVKPR--DHELISLMERSQTKYQV 208 (243)
Q Consensus 134 --~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~v~~vvd~~~~~~~~--~~~~~~~l~~~~~p~i~ 208 (243)
........++||||+.++. .+ ...+ ....+.....++.+++++|+....... ...+..++ ..--++
T Consensus 81 ~~~~~~~d~I~IEt~G~~~p~---~~---~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi---~~ad~i 151 (158)
T cd03112 81 DAGKIAFDRIVIETTGLADPG---PV---AQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQI---AFADRI 151 (158)
T ss_pred HhccCCCCEEEEECCCcCCHH---HH---HHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHH---HHCCEE
Confidence 0124578899999997632 11 1111 122233444589999999986421111 11222333 233467
Q ss_pred EeecCCC
Q 026112 209 VLTKTDT 215 (243)
Q Consensus 209 v~nK~D~ 215 (243)
|+||+|+
T Consensus 152 vlnk~dl 158 (158)
T cd03112 152 LLNKTDL 158 (158)
T ss_pred EEecccC
Confidence 8999996
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.1e-07 Score=78.36 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=21.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~ 114 (243)
+..+|+|.|.||+|||||+..|..
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~ 73 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGR 73 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHH
Confidence 446999999999999999999875
|
|
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.4e-07 Score=67.40 Aligned_cols=120 Identities=20% Similarity=0.193 Sum_probs=75.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
...+|.++|-.|+||+|.+-.+--- .....-+.+|....... +.+-++.+||.-|... +. .+.+.|+.
T Consensus 17 ~e~rililgldGaGkttIlyrlqvg-evvttkPtigfnve~v~-yKNLk~~vwdLggqtS------ir----PyWRcYy~ 84 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVG-EVVTTKPTIGFNVETVP-YKNLKFQVWDLGGQTS------IR----PYWRCYYA 84 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccC-cccccCCCCCcCccccc-cccccceeeEccCccc------cc----HHHHHHhc
Confidence 4568999999999999988666443 22223333333322222 2467899999999643 22 34455555
Q ss_pred cccCccEEEEEEeCCCC--CChhhHHHHHHHHh---cCCcEEEEeecCCCCChHHHHHHH
Q 026112 171 TRVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRA 225 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~--~~~~~~~~~~~l~~---~~~p~i~v~nK~D~~~~~~~~~~~ 225 (243)
. .|.++||+|+++. +.....++...++. .+..+++++||.|........+..
T Consensus 85 d---t~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~ 141 (182)
T KOG0072|consen 85 D---TDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVL 141 (182)
T ss_pred c---cceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHH
Confidence 4 8999999998763 33333455555532 246789999999987655444433
|
|
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.1e-07 Score=74.38 Aligned_cols=111 Identities=14% Similarity=0.040 Sum_probs=69.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceE-----EEEEE-EeCCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-----TINFF-KLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~-----~~~~~-~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++++||..++|||+|+...+... ....+.+|-- ++... .....+.+|||+|..+- .. +
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~---fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedY----------Dr-l 69 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNA---FPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDY----------DR-L 69 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCc---CcccccCeEEccceEEEEecCCCEEEEeeeecCCCccc----------cc-c
Confidence 3589999999999999998888762 2333333222 22221 12245789999996541 11 1
Q ss_pred HHHHhcccCccEEEEEEeCCCCCC--hhhHHHHHHHHhc--CCcEEEEeecCCCCCh
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVK--PRDHELISLMERS--QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~--~~~~~~~~~l~~~--~~p~i~v~nK~D~~~~ 218 (243)
+ -+ .-..+|+++++++...+.+ .....|+-.+... +.|+++|.+|.|+...
T Consensus 70 R-pl-sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d 124 (198)
T KOG0393|consen 70 R-PL-SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDD 124 (198)
T ss_pred c-cc-CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhC
Confidence 1 00 1123788888777554422 2234566666655 5899999999999843
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.1e-06 Score=72.04 Aligned_cols=124 Identities=15% Similarity=0.201 Sum_probs=64.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc-----cccccc-CC-C-C---------ceEEEEEE-------------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTS-DK-P-G---------LTQTINFF------------------- 134 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~-----~~~~vs-~~-~-g---------tT~~~~~~------------------- 134 (243)
.+..|+++|++|+||||++..|.+.. ++..++ +. . + ....+.+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 45688999999999999998887631 111010 00 0 0 00001111
Q ss_pred -EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh-cccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeec
Q 026112 135 -KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS-TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTK 212 (243)
Q Consensus 135 -~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK 212 (243)
..+..+.+|||||..... ....+.+..+.+-.-. .....+.+++|+|+..+ .............-.+.-+|+||
T Consensus 193 ~~~~~D~ViIDTaGr~~~~--~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a~~f~~~~~~~giIlTK 268 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNK--TNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQAKAFHEAVGLTGIILTK 268 (318)
T ss_pred HhCCCCEEEEeCCCCCcCC--HHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHHHHHHHhhCCCCEEEEEC
Confidence 124689999999965421 1111222222211100 01236778999999855 22322222222222456788999
Q ss_pred CCCCCh
Q 026112 213 TDTVFP 218 (243)
Q Consensus 213 ~D~~~~ 218 (243)
.|....
T Consensus 269 lD~t~~ 274 (318)
T PRK10416 269 LDGTAK 274 (318)
T ss_pred CCCCCC
Confidence 997643
|
|
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.9e-06 Score=74.60 Aligned_cols=124 Identities=17% Similarity=0.183 Sum_probs=70.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcccc---cc-cccCCCCceEE-----------EEE-----------------------E
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWG---VV-RTSDKPGLTQT-----------INF-----------------------F 134 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~---~~-~vs~~~gtT~~-----------~~~-----------------------~ 134 (243)
|..++.|.-|||||||+|.|+.... .+ +++...-.-.| +.. .
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 6788999999999999999997531 11 11111000000 000 0
Q ss_pred EeCCcEEEEeCCCCCCCccchHHHHHHHHHHH-HHHhcccCccEEEEEEeCCCCCChhhHHHHHHH-HhcCCcEEEEeec
Q 026112 135 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK-EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM-ERSQTKYQVVLTK 212 (243)
Q Consensus 135 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l-~~~~~p~i~v~nK 212 (243)
..+....+|.|-|+.++.. + ...+.. ..+...-..|.++-|+|+.+-....+. ..+.. .+...--++|+||
T Consensus 82 ~~~~D~ivIEtTGlA~P~p---v---~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~-~~~~~~~Qia~AD~ivlNK 154 (323)
T COG0523 82 RDRPDRLVIETTGLADPAP---V---IQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDA-IAELAEDQLAFADVIVLNK 154 (323)
T ss_pred cCCCCEEEEeCCCCCCCHH---H---HHHhccccccccceeeceEEEEEeHHHhhhhHHH-HHHHHHHHHHhCcEEEEec
Confidence 1135789999999987421 1 111211 223333347889999998864332221 11222 2334456899999
Q ss_pred CCCCChHHHHH
Q 026112 213 TDTVFPIDVAR 223 (243)
Q Consensus 213 ~D~~~~~~~~~ 223 (243)
+|++++.++..
T Consensus 155 ~Dlv~~~~l~~ 165 (323)
T COG0523 155 TDLVDAEELEA 165 (323)
T ss_pred ccCCCHHHHHH
Confidence 99999876433
|
|
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-07 Score=75.46 Aligned_cols=117 Identities=16% Similarity=0.173 Sum_probs=62.1
Q ss_pred CEEEEecCCCCchhHHHHHHhc-c---cccccccCCCC-c----------eEEEEEE----------------------E
Q 026112 93 PEIAFAGRSNVGKSSMLNALTR-Q---WGVVRTSDKPG-L----------TQTINFF----------------------K 135 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~-~---~~~~~vs~~~g-t----------T~~~~~~----------------------~ 135 (243)
|.+++.|..|||||||++.++. . .+.+.+-+.-| . ...+... .
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~ 80 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLRE 80 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 5788999999999999999993 1 12222211111 0 0001000 0
Q ss_pred e--CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHhcCCcEEEEee
Q 026112 136 L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERSQTKYQVVLT 211 (243)
Q Consensus 136 ~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~~~p~i~v~n 211 (243)
. +..+.++.+.|..++.. + .+. ...+...-..+.++.|+|+..-..... ..+. .+...--++|+|
T Consensus 81 ~~~~~d~IiIE~sG~a~p~~---l--~~~---~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~---~Qi~~ADvIvln 149 (178)
T PF02492_consen 81 YEERPDRIIIETSGLADPAP---L--ILQ---DPPLKEDFRLDSIITVVDATNFDELENIPELLR---EQIAFADVIVLN 149 (178)
T ss_dssp CHGC-SEEEEEEECSSGGGG---H--HHH---SHHHHHHESESEEEEEEEGTTHGGHTTHCHHHH---HHHCT-SEEEEE
T ss_pred cCCCcCEEEECCccccccch---h--hhc---cccccccccccceeEEeccccccccccchhhhh---hcchhcCEEEEe
Confidence 1 35789999999766322 2 111 122222233788999999864211111 1222 233445588899
Q ss_pred cCCCCChHH
Q 026112 212 KTDTVFPID 220 (243)
Q Consensus 212 K~D~~~~~~ 220 (243)
|+|+.+..+
T Consensus 150 K~D~~~~~~ 158 (178)
T PF02492_consen 150 KIDLVSDEQ 158 (178)
T ss_dssp -GGGHHHH-
T ss_pred ccccCChhh
Confidence 999997763
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-07 Score=82.84 Aligned_cols=135 Identities=21% Similarity=0.270 Sum_probs=93.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccc----cccc------------CCCCceEE---EEEEEeCCcEEEEeCCCCCCCc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGV----VRTS------------DKPGLTQT---INFFKLGTKLCLVDLPGYGFAY 152 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~----~~vs------------~~~gtT~~---~~~~~~~~~~~liDTpG~~~~~ 152 (243)
..+|+++..-.+||||...+++--... ..+. ...|.|.. +.+...|..+.+|||||+.+..
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence 347889999999999998877632110 0011 12344443 3444458999999999976521
Q ss_pred cchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHH
Q 026112 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 232 (243)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l 232 (243)
-++ +..++ . .|+++.|+|++.++..+...+-......++|-...+||+|+... .+....+.+++.+
T Consensus 117 --lev----erclr----v---ldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~a-nfe~avdsi~ekl 182 (753)
T KOG0464|consen 117 --LEV----ERCLR----V---LDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAA-NFENAVDSIEEKL 182 (753)
T ss_pred --EEH----HHHHH----H---hcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhh-hhhhHHHHHHHHh
Confidence 111 12222 2 79999999999998888777666667778999999999999864 5677788888888
Q ss_pred hhCCCccc
Q 026112 233 KANNSLVQ 240 (243)
Q Consensus 233 ~~~~~~~~ 240 (243)
......++
T Consensus 183 ~ak~l~l~ 190 (753)
T KOG0464|consen 183 GAKALKLQ 190 (753)
T ss_pred CCceEEEE
Confidence 77665554
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.43 E-value=8.7e-06 Score=69.10 Aligned_cols=78 Identities=18% Similarity=0.216 Sum_probs=42.5
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh-cccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS-TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDT 215 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~ 215 (243)
+..+.++||||.... .......+..+.+.... ....+|.+++|+|+..+ ..+........+.-...-+|+||.|.
T Consensus 154 ~~D~ViIDT~G~~~~--d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~~~f~~~~~~~g~IlTKlDe 229 (272)
T TIGR00064 154 NIDVVLIDTAGRLQN--KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQAKVFNEAVGLTGIILTKLDG 229 (272)
T ss_pred CCCEEEEeCCCCCcc--hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHHHHHHHhhCCCCEEEEEccCC
Confidence 468999999997542 11111222222221110 01237889999999744 33333233322222356788999998
Q ss_pred CCh
Q 026112 216 VFP 218 (243)
Q Consensus 216 ~~~ 218 (243)
...
T Consensus 230 ~~~ 232 (272)
T TIGR00064 230 TAK 232 (272)
T ss_pred CCC
Confidence 754
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.2e-06 Score=75.47 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++|+|++|+||||++..|...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999864
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.8e-06 Score=68.60 Aligned_cols=115 Identities=24% Similarity=0.348 Sum_probs=61.7
Q ss_pred EEEEecCCCCchhHHHHHHhcccc-----ccccc--CC-CCc---------eEEEEEEE--------------------e
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWG-----VVRTS--DK-PGL---------TQTINFFK--------------------L 136 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~-----~~~vs--~~-~gt---------T~~~~~~~--------------------~ 136 (243)
.|+++|++|+||||.+-.|..... +..++ .+ .|. .-.+.++. .
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~ 82 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKK 82 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhc
Confidence 679999999999999988876421 00010 00 000 00011111 1
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhH-HHHHHHHhcCCcEEEEeecCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMERSQTKYQVVLTKTDT 215 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~-~~~~~l~~~~~p~i~v~nK~D~ 215 (243)
+..+.+|||||.... .......+..+... . ..+-+++|++++.+ ..+. .+..+....+. --+++||.|.
T Consensus 83 ~~D~vlIDT~Gr~~~--d~~~~~el~~~~~~----~-~~~~~~LVlsa~~~--~~~~~~~~~~~~~~~~-~~lIlTKlDe 152 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPR--DEELLEELKKLLEA----L-NPDEVHLVLSATMG--QEDLEQALAFYEAFGI-DGLILTKLDE 152 (196)
T ss_dssp TSSEEEEEE-SSSST--HHHHHHHHHHHHHH----H-SSSEEEEEEEGGGG--GHHHHHHHHHHHHSST-CEEEEESTTS
T ss_pred CCCEEEEecCCcchh--hHHHHHHHHHHhhh----c-CCccceEEEecccC--hHHHHHHHHHhhcccC-ceEEEEeecC
Confidence 357999999997532 11111222222222 1 36789999998854 3333 33333333333 3566999998
Q ss_pred CCh
Q 026112 216 VFP 218 (243)
Q Consensus 216 ~~~ 218 (243)
...
T Consensus 153 t~~ 155 (196)
T PF00448_consen 153 TAR 155 (196)
T ss_dssp SST
T ss_pred CCC
Confidence 754
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.1e-06 Score=67.06 Aligned_cols=66 Identities=17% Similarity=0.128 Sum_probs=47.4
Q ss_pred cCccEEEEEEeCCCCCChhhHHHHHHHHhc--CCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 173 VSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~--~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
..+|++++|+|+..+....+..+.+++... ++|+++|+||+|+..+.... .+.+.+...+..++++
T Consensus 10 ~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~----~~~~~~~~~~~~ii~i 77 (141)
T cd01857 10 ERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRK----AWAEYFKKEGIVVVFF 77 (141)
T ss_pred hhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHH----HHHHHHHhcCCeEEEE
Confidence 349999999999887777777888888766 89999999999998655433 3334444444444443
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.8e-07 Score=69.36 Aligned_cols=106 Identities=18% Similarity=0.172 Sum_probs=66.8
Q ss_pred EecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE-------EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF-------KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 97 ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~-------~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
++|.+++|||.|+-++-.. +.....--.|..+.+. ....++++|||+|.. .+......|+
T Consensus 2 llgds~~gktcllir~kdg---afl~~~fistvgid~rnkli~~~~~kvklqiwdtagqe----------rfrsvt~ayy 68 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDG---AFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQE----------RFRSVTHAYY 68 (192)
T ss_pred ccccCccCceEEEEEeccC---ceecCceeeeeeeccccceeccCCcEEEEEEeeccchH----------HHhhhhHhhh
Confidence 6899999999998655432 1111111122222221 113468899999952 3455566666
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~~ 218 (243)
+. +|.++++.|.....+... ..|+..+... .+.+.++.||+|+..+
T Consensus 69 rd---a~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~e 118 (192)
T KOG0083|consen 69 RD---ADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHE 118 (192)
T ss_pred cc---cceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchh
Confidence 65 899999999776544333 4566655443 5678999999999653
|
|
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.1e-07 Score=75.70 Aligned_cols=88 Identities=23% Similarity=0.247 Sum_probs=64.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE---EEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
..+|.++|.|++|||||+..|++.. ..+..+.|||-... ..+.+.++.+.|.||+.+..... ..-.++.
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~--s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdg------kgrg~qv 130 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTF--SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDG------KGRGKQV 130 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCC--CccccccceeEEEecceEeccccceeeecCcchhcccccC------CCCccEE
Confidence 4589999999999999999999984 67888888775542 33458899999999987753211 0112233
Q ss_pred HhcccCccEEEEEEeCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWG 187 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~ 187 (243)
+...+.|+++++|+|...+
T Consensus 131 iavartcnli~~vld~~kp 149 (358)
T KOG1487|consen 131 IAVARTCNLIFIVLDVLKP 149 (358)
T ss_pred EEEeecccEEEEEeeccCc
Confidence 4445569999999997644
|
|
| >KOG0463 consensus GTP-binding protein GP-1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.1e-07 Score=78.65 Aligned_cols=140 Identities=24% Similarity=0.246 Sum_probs=93.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc-----cccc-------ccCCCCceEEE-----------EE-------------EE
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVR-------TSDKPGLTQTI-----------NF-------------FK 135 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~-----~~~~-------vs~~~gtT~~~-----------~~-------------~~ 135 (243)
..+|+++|...+|||||+-.|+..+ ..+. ..-..|.|..+ +. ..
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 4589999999999999999888532 0000 00011112111 00 00
Q ss_pred e----CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEee
Q 026112 136 L----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLT 211 (243)
Q Consensus 136 ~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~n 211 (243)
. ..-+++||.+|+.. .+...+-.. ...-.|..++++-+..++--...+.+.+...+.+|+++|+|
T Consensus 213 Ice~saKviTFIDLAGHEk---------YLKTTvFGM--TGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVT 281 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEK---------YLKTTVFGM--TGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVT 281 (641)
T ss_pred eccccceeEEEEeccchhh---------hhheeeecc--ccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEE
Confidence 0 12478999999632 111111111 11236888889988887777777888888888999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 212 KTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 212 K~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
|+|..+..-+++.+..+.+.+...++...||
T Consensus 282 KIDMCPANiLqEtmKll~rllkS~gcrK~Pv 312 (641)
T KOG0463|consen 282 KIDMCPANILQETMKLLTRLLKSPGCRKLPV 312 (641)
T ss_pred eeccCcHHHHHHHHHHHHHHhcCCCcccCcE
Confidence 9999988878888888888888888777776
|
|
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=8.6e-07 Score=70.39 Aligned_cols=68 Identities=18% Similarity=0.138 Sum_probs=44.2
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH-h--cCCcEEEEeec
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-R--SQTKYQVVLTK 212 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~-~--~~~p~i~v~nK 212 (243)
...+.+|||||... +..+...|+. .+|++++|+|.+...+... ..++..+. . ...|+++|+||
T Consensus 28 ~v~l~iwDt~G~e~----------~~~~~~~~~~---~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK 94 (176)
T PTZ00099 28 PVRLQLWDTAGQER----------FRSLIPSYIR---DSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNK 94 (176)
T ss_pred EEEEEEEECCChHH----------hhhccHHHhC---CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 35788999999632 2233444544 3999999999876422222 23444332 2 25789999999
Q ss_pred CCCCC
Q 026112 213 TDTVF 217 (243)
Q Consensus 213 ~D~~~ 217 (243)
+|+..
T Consensus 95 ~DL~~ 99 (176)
T PTZ00099 95 TDLGD 99 (176)
T ss_pred ccccc
Confidence 99964
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.1e-06 Score=74.70 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=24.1
Q ss_pred CCCCCCEEEEecCCCCchhHHHHHHhcc
Q 026112 88 PAPDLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 88 ~~~~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...+...|.|+|.||||||||++.+++.
T Consensus 100 ~~~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 100 AARKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred HhcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999888864
|
|
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.3e-06 Score=71.12 Aligned_cols=135 Identities=18% Similarity=0.248 Sum_probs=74.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc---ccccccCCCC-----------c------eEEEEEE----------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPG-----------L------TQTINFF---------------- 134 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~---~~~~vs~~~g-----------t------T~~~~~~---------------- 134 (243)
..|..++.|.-|||||||+|.++... +.+.+.+.-| . ...+...
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~~ 82 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFIPT 82 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHHHH
Confidence 35788999999999999999998642 1111111111 0 0011110
Q ss_pred -------EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChh----------------
Q 026112 135 -------KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR---------------- 191 (243)
Q Consensus 135 -------~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~---------------- 191 (243)
.......+|.|.|+.++ ..+...+ ....+...-..|.|+.|+|+.......
T Consensus 83 l~~l~~~~~~~d~IvIEtsG~a~P---~~i~~~~---~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~ 156 (341)
T TIGR02475 83 MTKLLARRQRPDHILIETSGLALP---KPLVQAF---QWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADD 156 (341)
T ss_pred HHHHHhccCCCCEEEEeCCCCCCH---HHHHHHh---cCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccc
Confidence 01357889999998763 2222111 111112222478899999986421100
Q ss_pred ----hHHHHHH-HHhcCCcEEEEeecCCCCChHHHHHHHHHHHHH
Q 026112 192 ----DHELISL-MERSQTKYQVVLTKTDTVFPIDVARRAMQIEES 231 (243)
Q Consensus 192 ----~~~~~~~-l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~ 231 (243)
...+... ..+....-++|+||+|+++..++....+.+++.
T Consensus 157 ~~~~~~~~~~~~~~Qi~~AD~IvlnK~Dl~~~~~l~~~~~~l~~~ 201 (341)
T TIGR02475 157 NLDHETPLEELFEDQLACADLVILNKADLLDAAGLARVRAEIAAE 201 (341)
T ss_pred cccccchHHHHHHHHHHhCCEEEEeccccCCHHHHHHHHHHHHHh
Confidence 0001111 123344568899999999988776665555543
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.4e-06 Score=72.22 Aligned_cols=73 Identities=21% Similarity=0.198 Sum_probs=41.3
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
+..+.+|||||.... .......+..+. . ....|.+++|+|+..+ ....+..+.....-..--+++||.|..
T Consensus 222 ~~DvVLIDTaGr~~~--~~~lm~eL~~i~----~-~~~pd~~iLVl~a~~g--~d~~~~a~~f~~~~~~~giIlTKlD~~ 292 (336)
T PRK14974 222 GIDVVLIDTAGRMHT--DANLMDELKKIV----R-VTKPDLVIFVGDALAG--NDAVEQAREFNEAVGIDGVILTKVDAD 292 (336)
T ss_pred CCCEEEEECCCccCC--cHHHHHHHHHHH----H-hhCCceEEEeeccccc--hhHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 457999999997532 111111122221 1 1236889999998754 333333333333223467789999987
Q ss_pred Ch
Q 026112 217 FP 218 (243)
Q Consensus 217 ~~ 218 (243)
..
T Consensus 293 ~~ 294 (336)
T PRK14974 293 AK 294 (336)
T ss_pred CC
Confidence 54
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.6e-06 Score=64.59 Aligned_cols=57 Identities=23% Similarity=0.257 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHH
Q 026112 161 WEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 161 ~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~ 220 (243)
|.++.+..... +|++++|+|++.+....+..+...+...+.|+++|+||+|+.....
T Consensus 2 ~~~~~~~i~~~---aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~ 58 (156)
T cd01859 2 WKRLVRRIIKE---SDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEV 58 (156)
T ss_pred HHHHHHHHHhh---CCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHH
Confidence 44454444443 8999999999876666666676666667899999999999976543
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.1e-06 Score=79.97 Aligned_cols=138 Identities=20% Similarity=0.250 Sum_probs=93.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccc-ccccCCC--CceEEE----------------EEEEeCCcEEEEeCCCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKP--GLTQTI----------------NFFKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~-~~vs~~~--gtT~~~----------------~~~~~~~~~~liDTpG~~~~ 151 (243)
...+|.++-+--+||||+.+.++-.... ....... +++.|. .+...+..+.+|||||+.+.
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 4457888888899999999988753210 1111111 222221 11112678999999997652
Q ss_pred ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHH
Q 026112 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES 231 (243)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~ 231 (243)
- -++ ++.++ -.|+.++|+|+-.+...+...+-+.+...++|.+..+||+|.+... ..+.+..+...
T Consensus 118 T--~EV--------eRALr---VlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~-~~~~l~~i~~k 183 (721)
T KOG0465|consen 118 T--FEV--------ERALR---VLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGAS-PFRTLNQIRTK 183 (721)
T ss_pred E--EEe--------hhhhh---hccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCC-hHHHHHHHHhh
Confidence 1 111 12222 2799999999998998888888889999999999999999999763 55666778888
Q ss_pred HhhCCCccc-cC
Q 026112 232 LKANNSLVQ-PV 242 (243)
Q Consensus 232 l~~~~~~~~-pi 242 (243)
+......+| ||
T Consensus 184 l~~~~a~vqiPi 195 (721)
T KOG0465|consen 184 LNHKPAVVQIPI 195 (721)
T ss_pred cCCchheeEccc
Confidence 876555554 54
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.8e-06 Score=67.12 Aligned_cols=56 Identities=20% Similarity=0.155 Sum_probs=42.0
Q ss_pred cCccEEEEEEeCCCCCChhhHHHHHHHHhc--CCcEEEEeecCCCCChHHHHHHHHHH
Q 026112 173 VSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQI 228 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~--~~p~i~v~nK~D~~~~~~~~~~~~~l 228 (243)
.++|++++|+|++.+....+..+.+.+... +.|+++|+||+|+.++.+.......+
T Consensus 7 ~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~ 64 (157)
T cd01858 7 DSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKIL 64 (157)
T ss_pred hhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHH
Confidence 349999999999887666677777777653 48999999999998765544433333
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1e-05 Score=71.45 Aligned_cols=117 Identities=25% Similarity=0.355 Sum_probs=63.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc-----ccccccC--CC-C------c---eEEEEEE--E---------------eC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSD--KP-G------L---TQTINFF--K---------------LG 137 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~-----~~~~vs~--~~-g------t---T~~~~~~--~---------------~~ 137 (243)
...|+|+|++|+||||++..|+... +...++. +. + + ...+.+. . .+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 3589999999999999999997531 1111110 00 0 0 0001110 0 13
Q ss_pred CcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhcCCcEEEEeecCCCC
Q 026112 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
..+.||||||-.... .+.+ .++ ..++.. ...+.+++|+|++.. ..+ ..+++.+... ..--+++||.|..
T Consensus 321 ~DvVLIDTaGRs~kd-~~lm----~EL-~~~lk~-~~PdevlLVLsATtk--~~d~~~i~~~F~~~-~idglI~TKLDET 390 (436)
T PRK11889 321 VDYILIDTAGKNYRA-SETV----EEM-IETMGQ-VEPDYICLTLSASMK--SKDMIEIITNFKDI-HIDGIVFTKFDET 390 (436)
T ss_pred CCEEEEeCccccCcC-HHHH----HHH-HHHHhh-cCCCeEEEEECCccC--hHHHHHHHHHhcCC-CCCEEEEEcccCC
Confidence 589999999964311 1111 111 122221 225678899987643 333 4455555443 2345778999986
Q ss_pred Ch
Q 026112 217 FP 218 (243)
Q Consensus 217 ~~ 218 (243)
..
T Consensus 391 ~k 392 (436)
T PRK11889 391 AS 392 (436)
T ss_pred CC
Confidence 53
|
|
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.1e-06 Score=72.41 Aligned_cols=140 Identities=19% Similarity=0.288 Sum_probs=88.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccc----------cc---------------ccCCCCceEEEEE------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV----------VR---------------TSDKPGLTQTINF------------ 133 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~----------~~---------------vs~~~gtT~~~~~------------ 133 (243)
...+|+-+|..-.||||+..++.|-+.+ .+ .-+.|++-+....
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g 116 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG 116 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence 3578999999999999999999974200 00 0011111111100
Q ss_pred ----EEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC-CChhhHHHHHHHHhcC-CcEE
Q 026112 134 ----FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQ-TKYQ 207 (243)
Q Consensus 134 ----~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-~~~~~~~~~~~l~~~~-~p~i 207 (243)
...-..+.++|+||+. -++...+....-.|..++++.+.++ .+++..+.+..+.-+. +.++
T Consensus 117 ~~~~~klvRHVSfVDCPGHD-------------iLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhii 183 (466)
T KOG0466|consen 117 CEGKMKLVRHVSFVDCPGHD-------------ILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHII 183 (466)
T ss_pred CCCceEEEEEEEeccCCchH-------------HHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEE
Confidence 0011368899999963 2344444444446888888876654 4445555554444333 5789
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHHhh---CCCccccCC
Q 026112 208 VVLTKTDTVFPIDVARRAMQIEESLKA---NNSLVQPVV 243 (243)
Q Consensus 208 ~v~nK~D~~~~~~~~~~~~~l~~~l~~---~~~~~~pi~ 243 (243)
++-||+|+..+....+..+.+.+++.. .+.++.||+
T Consensus 184 ilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPis 222 (466)
T KOG0466|consen 184 ILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPIS 222 (466)
T ss_pred EEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeeh
Confidence 999999999998888888888887765 344666653
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=1e-05 Score=72.38 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+++|++|+||||++..|.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988764
|
|
| >KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.2e-05 Score=66.23 Aligned_cols=136 Identities=16% Similarity=0.200 Sum_probs=75.3
Q ss_pred CCCCCEEEEecCCCCchhHHHHHHhcccc---cccccCCCCce---------------------------EEEEEEE---
Q 026112 89 APDLPEIAFAGRSNVGKSSMLNALTRQWG---VVRTSDKPGLT---------------------------QTINFFK--- 135 (243)
Q Consensus 89 ~~~~~~I~ivG~~naGKSSLin~L~~~~~---~~~vs~~~gtT---------------------------~~~~~~~--- 135 (243)
..+.|.-.+.|+-|||||||+|.++...+ ++..-+.-|-. ..|....
T Consensus 54 ~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~gv 133 (391)
T KOG2743|consen 54 GARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNGV 133 (391)
T ss_pred CCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchHH
Confidence 35678888999999999999999886531 11111111100 0011100
Q ss_pred ----------eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh-----HHHHHHHH
Q 026112 136 ----------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-----HELISLME 200 (243)
Q Consensus 136 ----------~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-----~~~~~~l~ 200 (243)
......++.|-|+.++..-. +-.| ...-+..-...|+|+-|+|+.+.....+ -.+-+...
T Consensus 134 raie~lvqkkGkfD~IllETTGlAnPaPia--~~Fw---~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~ 208 (391)
T KOG2743|consen 134 RAIENLVQKKGKFDHILLETTGLANPAPIA--SMFW---LDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATR 208 (391)
T ss_pred HHHHHHHhcCCCcceEEEeccCCCCcHHHH--HHHh---hhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHH
Confidence 12468899999998743211 1112 1222222233799999999875311111 11212222
Q ss_pred hcCCcEEEEeecCCCCChHHHHHHHHHHH
Q 026112 201 RSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (243)
Q Consensus 201 ~~~~p~i~v~nK~D~~~~~~~~~~~~~l~ 229 (243)
+....-.+++||.|++...++....+.++
T Consensus 209 QiA~AD~II~NKtDli~~e~~~~l~q~I~ 237 (391)
T KOG2743|consen 209 QIALADRIIMNKTDLVSEEEVKKLRQRIR 237 (391)
T ss_pred HHhhhheeeeccccccCHHHHHHHHHHHH
Confidence 33334467789999999877666555544
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.2e-05 Score=73.44 Aligned_cols=117 Identities=20% Similarity=0.231 Sum_probs=61.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc-------ccccccC--CC-C---------ceEEEEEEE--------------eC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW-------GVVRTSD--KP-G---------LTQTINFFK--------------LG 137 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~-------~~~~vs~--~~-g---------tT~~~~~~~--------------~~ 137 (243)
.+..|+|+|++|+||||++..|.... ++..++. +. + ....+.+.. .+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 46689999999999999998887531 1111110 00 0 000000110 14
Q ss_pred CcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
..+.||||||..... ......+.. +.. .. ....++|+++....... .++++.+... .+.-+|+||+|...
T Consensus 429 ~DLVLIDTaG~s~~D--~~l~eeL~~-L~a----a~-~~a~lLVLpAtss~~Dl-~eii~~f~~~-~~~gvILTKlDEt~ 498 (559)
T PRK12727 429 YKLVLIDTAGMGQRD--RALAAQLNW-LRA----AR-QVTSLLVLPANAHFSDL-DEVVRRFAHA-KPQGVVLTKLDETG 498 (559)
T ss_pred CCEEEecCCCcchhh--HHHHHHHHH-HHH----hh-cCCcEEEEECCCChhHH-HHHHHHHHhh-CCeEEEEecCcCcc
Confidence 689999999975311 111111111 111 11 23467788876442222 2344444443 56779999999854
|
|
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.1e-05 Score=62.32 Aligned_cols=21 Identities=33% Similarity=0.608 Sum_probs=18.6
Q ss_pred EEEecCCCCchhHHHHHHhcc
Q 026112 95 IAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~ 115 (243)
|+++|.+|+||||++..+...
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999888753
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.1e-05 Score=68.27 Aligned_cols=122 Identities=15% Similarity=0.188 Sum_probs=66.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc---ccccccCCCC-----------ceEEEEEEE---------------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPG-----------LTQTINFFK--------------------- 135 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~---~~~~vs~~~g-----------tT~~~~~~~--------------------- 135 (243)
..|..++.|.-|||||||+|.|+... +.+.+.+.-| ...++....
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 46889999999999999999998642 1111111111 000111100
Q ss_pred ------eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEE
Q 026112 136 ------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVV 209 (243)
Q Consensus 136 ------~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v 209 (243)
......+|.|.|+.++ ..+-..+ +....+...-..+.++.|+|+.......+.. .....+...--++|
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~p---~~i~~~~--~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~-~~~~~Qi~~AD~Iv 156 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMADP---GPIIQTF--FSHEVLCQRYLLDGVIALVDAVHADEQMNQF-TIAQSQVGYADRIL 156 (318)
T ss_pred HHhccCCCCCEEEEECCCccCH---HHHHHHH--hcChhhcccEEeccEEEEEEhhhhhhhcccc-HHHHHHHHhCCEEE
Confidence 0256789999998752 2221111 0011222223368899999987532211110 01112333445889
Q ss_pred eecCCCCCh
Q 026112 210 LTKTDTVFP 218 (243)
Q Consensus 210 ~nK~D~~~~ 218 (243)
+||+|+.++
T Consensus 157 lnK~Dl~~~ 165 (318)
T PRK11537 157 LTKTDVAGE 165 (318)
T ss_pred EeccccCCH
Confidence 999999975
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.2e-05 Score=70.80 Aligned_cols=71 Identities=20% Similarity=0.270 Sum_probs=38.0
Q ss_pred CcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
..+.++||||-... .+..-+.+..+. ....+|.+++|+|+..+ .......+.....-...-+|+||.|...
T Consensus 176 ~DvVIIDTAGr~~~--d~~lm~El~~l~-----~~~~pdevlLVvda~~g--q~av~~a~~F~~~l~i~gvIlTKlD~~a 246 (437)
T PRK00771 176 ADVIIVDTAGRHAL--EEDLIEEMKEIK-----EAVKPDEVLLVIDATIG--QQAKNQAKAFHEAVGIGGIIITKLDGTA 246 (437)
T ss_pred CCEEEEECCCcccc--hHHHHHHHHHHH-----HHhcccceeEEEecccc--HHHHHHHHHHHhcCCCCEEEEecccCCC
Confidence 47999999996431 111111111111 11237889999998765 2222333332221112457889999753
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.3e-06 Score=76.91 Aligned_cols=59 Identities=29% Similarity=0.285 Sum_probs=40.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccC-------CCCceEEEEEEEeCCcEEEEeCCCCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~-------~~gtT~~~~~~~~~~~~~liDTpG~~~~ 151 (243)
+-+++++|.+|+|||||+|.|++... ..++. ...+|+............++||||+.+.
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~-~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEV-QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhcc-cceeeEEECCCCCcchhhhccEEEecCCCeecCCCchhhh
Confidence 45899999999999999999998632 22221 1225555555555555678899998653
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.1e-05 Score=63.73 Aligned_cols=23 Identities=39% Similarity=0.614 Sum_probs=20.8
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+.|+++|++|+|||||++.+++.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999988874
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.3e-05 Score=69.83 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=20.3
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...++++|++|+||||++..|+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999888753
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.3e-05 Score=63.34 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=44.6
Q ss_pred cEEEEEEeCCCCCChhhHHHHHH--HHhcCCcEEEEeecCCCCChHHHHHHHHHHHHH
Q 026112 176 KRVCLLIDTKWGVKPRDHELISL--MERSQTKYQVVLTKTDTVFPIDVARRAMQIEES 231 (243)
Q Consensus 176 d~v~~vvd~~~~~~~~~~~~~~~--l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~ 231 (243)
|+|++|+|+..++...+..+.+. +...+.|+++|+||+|+.++..+....+.+++.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~ 58 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRRE 58 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhh
Confidence 78999999998777777777777 445679999999999999877766666666544
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=98.04 E-value=3e-05 Score=68.36 Aligned_cols=117 Identities=22% Similarity=0.266 Sum_probs=65.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccc-cccccCCCCceEEEEEEE--------------------------------eCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFK--------------------------------LGT 138 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~-~~~vs~~~gtT~~~~~~~--------------------------------~~~ 138 (243)
+..|+++|++|+||||.+-.|..... ...-....-.|.|.-... ...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 66899999999999999988887631 011111222333321100 135
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
++.+|||+|-..- +...+ .-+..+.... ...-+++|++++.. ..+ .++++.....+.. -+++||.|...
T Consensus 283 d~ILVDTaGrs~~-D~~~i-----~el~~~~~~~-~~i~~~Lvlsat~K--~~dlkei~~~f~~~~i~-~~I~TKlDET~ 352 (407)
T COG1419 283 DVILVDTAGRSQY-DKEKI-----EELKELIDVS-HSIEVYLVLSATTK--YEDLKEIIKQFSLFPID-GLIFTKLDETT 352 (407)
T ss_pred CEEEEeCCCCCcc-CHHHH-----HHHHHHHhcc-ccceEEEEEecCcc--hHHHHHHHHHhccCCcc-eeEEEcccccC
Confidence 8999999996421 11111 1233344333 24556778887632 223 3555555444333 35579999764
Q ss_pred h
Q 026112 218 P 218 (243)
Q Consensus 218 ~ 218 (243)
.
T Consensus 353 s 353 (407)
T COG1419 353 S 353 (407)
T ss_pred c
Confidence 3
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.6e-05 Score=66.86 Aligned_cols=72 Identities=22% Similarity=0.255 Sum_probs=38.0
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
+..+.++||||-... .+........+.. ....+.+++|+|+..+ +......+.+...-...-+|+||.|..
T Consensus 183 ~~DvVIIDTaGrl~~--d~~lm~eL~~i~~-----~v~p~evllVlda~~g--q~av~~a~~F~~~~~i~giIlTKlD~~ 253 (433)
T PRK10867 183 GYDVVIVDTAGRLHI--DEELMDELKAIKA-----AVNPDEILLVVDAMTG--QDAVNTAKAFNEALGLTGVILTKLDGD 253 (433)
T ss_pred CCCEEEEeCCCCccc--CHHHHHHHHHHHH-----hhCCCeEEEEEecccH--HHHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 457999999996431 1111111122211 1126778999998643 333333333332212345778999965
Q ss_pred C
Q 026112 217 F 217 (243)
Q Consensus 217 ~ 217 (243)
.
T Consensus 254 ~ 254 (433)
T PRK10867 254 A 254 (433)
T ss_pred c
Confidence 4
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=98.02 E-value=7.5e-05 Score=58.84 Aligned_cols=72 Identities=25% Similarity=0.181 Sum_probs=39.9
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHH-HHhcCCcEEEEeecCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL-MERSQTKYQVVLTKTDT 215 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~-l~~~~~p~i~v~nK~D~ 215 (243)
+..+.++||||...- ..+.+ ..+ ..+.. ....+.+++|+|+... ....+.... ....+ ..-+|+||.|.
T Consensus 82 ~~d~viiDt~g~~~~-~~~~l----~~l-~~l~~-~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~-~~~viltk~D~ 151 (173)
T cd03115 82 NFDVVIVDTAGRLQI-DENLM----EEL-KKIKR-VVKPDEVLLVVDAMTG--QDAVNQAKAFNEALG-ITGVILTKLDG 151 (173)
T ss_pred CCCEEEEECcccchh-hHHHH----HHH-HHHHh-hcCCCeEEEEEECCCC--hHHHHHHHHHHhhCC-CCEEEEECCcC
Confidence 456899999997431 11111 111 11111 1237889999998533 222233333 33444 46788899998
Q ss_pred CCh
Q 026112 216 VFP 218 (243)
Q Consensus 216 ~~~ 218 (243)
...
T Consensus 152 ~~~ 154 (173)
T cd03115 152 DAR 154 (173)
T ss_pred CCC
Confidence 764
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >KOG1534 consensus Putative transcription factor FET5 [Transcription] | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.7e-05 Score=62.63 Aligned_cols=76 Identities=21% Similarity=0.179 Sum_probs=43.1
Q ss_pred CcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh------HHHHHHHHhcCCcEEEEee
Q 026112 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD------HELISLMERSQTKYQVVLT 211 (243)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~------~~~~~~l~~~~~p~i~v~n 211 (243)
..+.++|+||..+-...-.+. ..+++. +.....--++++++|+.--. +.. ...+.......+|-|=|++
T Consensus 98 ddylifDcPGQIELytH~pVm---~~iv~h-l~~~~F~~c~Vylldsqf~v-D~~KfiSG~lsAlsAMi~lE~P~INvls 172 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVM---PQIVEH-LKQWNFNVCVVYLLDSQFLV-DSTKFISGCLSALSAMISLEVPHINVLS 172 (273)
T ss_pred CCEEEEeCCCeeEEeecChhH---HHHHHH-HhcccCceeEEEEeccchhh-hHHHHHHHHHHHHHHHHHhcCcchhhhh
Confidence 479999999976532222111 122221 11122234577888875322 222 2233333456899999999
Q ss_pred cCCCCCh
Q 026112 212 KTDTVFP 218 (243)
Q Consensus 212 K~D~~~~ 218 (243)
|+|+...
T Consensus 173 KMDLlk~ 179 (273)
T KOG1534|consen 173 KMDLLKD 179 (273)
T ss_pred HHHHhhh
Confidence 9999875
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.7e-05 Score=71.48 Aligned_cols=118 Identities=19% Similarity=0.182 Sum_probs=61.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc-------ccccccCCCC---c-----e----EEEEEE--------------EeCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW-------GVVRTSDKPG---L-----T----QTINFF--------------KLGT 138 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~-------~~~~vs~~~g---t-----T----~~~~~~--------------~~~~ 138 (243)
+..++|+|++|+||||++..|.... ++..++.-+. . + ..+.+. ..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 4588999999999999987776531 1111111000 0 0 000000 0146
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
.+.+|||||..... .. ....+..++ .......-+++|+++... ..+ ..+...+...+ +--+++||.|...
T Consensus 301 DlVlIDt~G~~~~d-~~-~~~~L~~ll----~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~~-~~~vI~TKlDet~ 371 (424)
T PRK05703 301 DVILIDTAGRSQRD-KR-LIEELKALI----EFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRLP-LDGLIFTKLDETS 371 (424)
T ss_pred CEEEEeCCCCCCCC-HH-HHHHHHHHH----hccCCCCeEEEEEECCCC--HHHHHHHHHHhCCCC-CCEEEEecccccc
Confidence 89999999974311 11 111122222 211123567788887643 333 24444444433 2368899999864
Q ss_pred h
Q 026112 218 P 218 (243)
Q Consensus 218 ~ 218 (243)
.
T Consensus 372 ~ 372 (424)
T PRK05703 372 S 372 (424)
T ss_pred c
Confidence 3
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.7e-05 Score=72.58 Aligned_cols=117 Identities=18% Similarity=0.146 Sum_probs=62.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccccccc-CCCCceEEE------------------EEE--------------EeCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKPGLTQTI------------------NFF--------------KLGT 138 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs-~~~gtT~~~------------------~~~--------------~~~~ 138 (243)
+..|+|+|++|+||||++..|++........ .+.-.|.|. .+. ..+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 4578999999999999999998752000000 000000010 000 0145
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc-C-CcEEEEeecCCC
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS-Q-TKYQVVLTKTDT 215 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~-~-~p~i~v~nK~D~ 215 (243)
.+.||||||.... .....+....+ ......+-+++|+|+... ..+ .++.+..... . .+-=+|+||.|.
T Consensus 265 D~VLIDTAGRs~~--d~~l~eel~~l-----~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~i~glIlTKLDE 335 (767)
T PRK14723 265 HLVLIDTVGMSQR--DRNVSEQIAML-----CGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGEDVDGCIITKLDE 335 (767)
T ss_pred CEEEEeCCCCCcc--CHHHHHHHHHH-----hccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCCCCEEEEeccCC
Confidence 8999999996431 11122222211 112335678899998743 222 2344444332 1 234577999997
Q ss_pred CC
Q 026112 216 VF 217 (243)
Q Consensus 216 ~~ 217 (243)
..
T Consensus 336 t~ 337 (767)
T PRK14723 336 AT 337 (767)
T ss_pred CC
Confidence 64
|
|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.9e-05 Score=66.62 Aligned_cols=123 Identities=21% Similarity=0.279 Sum_probs=64.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc-----c-------------------------cccccCCCCceEEEEEE------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----G-------------------------VVRTSDKPGLTQTINFF------ 134 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~-----~-------------------------~~~vs~~~gtT~~~~~~------ 134 (243)
....|+++|-.|+||||.|-.|+... + ...++...|.......+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 35678999999999999998887521 0 00111111110000000
Q ss_pred -EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhccc-CccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeec
Q 026112 135 -KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV-SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTK 212 (243)
Q Consensus 135 -~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK 212 (243)
.-+..+.++||+|=..+ ...+...++.+.+-...... ..+-+++++|+..+ ++...-.+.....-.=-=+++||
T Consensus 218 kar~~DvvliDTAGRLhn--k~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG--qnal~QAk~F~eav~l~GiIlTK 293 (340)
T COG0552 218 KARGIDVVLIDTAGRLHN--KKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG--QNALSQAKIFNEAVGLDGIILTK 293 (340)
T ss_pred HHcCCCEEEEeCcccccC--chhHHHHHHHHHHHhccccCCCCceEEEEEEcccC--hhHHHHHHHHHHhcCCceEEEEe
Confidence 01679999999994332 22233333333332211111 13558889999876 44444444443332223467899
Q ss_pred CCCCC
Q 026112 213 TDTVF 217 (243)
Q Consensus 213 ~D~~~ 217 (243)
+|-..
T Consensus 294 lDgtA 298 (340)
T COG0552 294 LDGTA 298 (340)
T ss_pred cccCC
Confidence 99543
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.2e-05 Score=60.85 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=36.2
Q ss_pred cEEEEEEeCCCCCChhhHHHH-HHHHhcCCcEEEEeecCCCCChHHHHH
Q 026112 176 KRVCLLIDTKWGVKPRDHELI-SLMERSQTKYQVVLTKTDTVFPIDVAR 223 (243)
Q Consensus 176 d~v~~vvd~~~~~~~~~~~~~-~~l~~~~~p~i~v~nK~D~~~~~~~~~ 223 (243)
|++++|+|+..+....+..+. ..+...++|+++|+||+|+.+..+...
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~ 49 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRK 49 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHH
Confidence 689999999876555555554 456667899999999999987654433
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.7e-05 Score=67.59 Aligned_cols=68 Identities=15% Similarity=0.177 Sum_probs=41.6
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCC--------Chhh---HHHHHHHHh----
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--------KPRD---HELISLMER---- 201 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~--------~~~~---~~~~~~l~~---- 201 (243)
+..+.++|++|... .+..|..+.. .+++|++|+|.++-. ...- ...++.+-.
T Consensus 160 ~~~~~~~DvgGq~~------~R~kW~~~f~-------~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~ 226 (317)
T cd00066 160 NLKFRMFDVGGQRS------ERKKWIHCFE-------DVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF 226 (317)
T ss_pred ceEEEEECCCCCcc------cchhHHHHhC-------CCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence 45788999999643 2334544332 389999999976420 0111 122222221
Q ss_pred cCCcEEEEeecCCCCC
Q 026112 202 SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 202 ~~~p~i~v~nK~D~~~ 217 (243)
.+.|+++++||.|++.
T Consensus 227 ~~~pill~~NK~D~f~ 242 (317)
T cd00066 227 ANTSIILFLNKKDLFE 242 (317)
T ss_pred cCCCEEEEccChHHHH
Confidence 2689999999999753
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00015 Score=65.30 Aligned_cols=72 Identities=21% Similarity=0.214 Sum_probs=38.9
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
+..+.++||||.... .+.....+..+.. ....+.+++|+|+..+ .......+.+...-...-+|+||.|..
T Consensus 182 ~~DvVIIDTaGr~~~--d~~l~~eL~~i~~-----~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i~giIlTKlD~~ 252 (428)
T TIGR00959 182 GFDVVIVDTAGRLQI--DEELMEELAAIKE-----ILNPDEILLVVDAMTG--QDAVNTAKTFNERLGLTGVVLTKLDGD 252 (428)
T ss_pred CCCEEEEeCCCcccc--CHHHHHHHHHHHH-----hhCCceEEEEEeccch--HHHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 457999999996431 1111111222211 1236788999998643 333334444332212346778999964
Q ss_pred C
Q 026112 217 F 217 (243)
Q Consensus 217 ~ 217 (243)
.
T Consensus 253 ~ 253 (428)
T TIGR00959 253 A 253 (428)
T ss_pred c
Confidence 3
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=4e-05 Score=67.45 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~ 114 (243)
+...++++|++|+||||++..|..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999988875
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00016 Score=64.32 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~ 114 (243)
...|+++|++|+||||.+..|..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999988875
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.2e-05 Score=65.09 Aligned_cols=50 Identities=16% Similarity=0.154 Sum_probs=38.0
Q ss_pred cccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHH
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVA 222 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~ 222 (243)
....+|+|++|+|+..+....+..+.+.+. +.|+++|+||+|+.++....
T Consensus 18 ~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~--~kp~IiVlNK~DL~~~~~~~ 67 (276)
T TIGR03596 18 KLKLVDVVIEVLDARIPLSSRNPMIDEIRG--NKPRLIVLNKADLADPAVTK 67 (276)
T ss_pred HHhhCCEEEEEEeCCCCCCCCChhHHHHHC--CCCEEEEEEccccCCHHHHH
Confidence 344499999999998776666666666653 68999999999997654333
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00015 Score=55.16 Aligned_cols=117 Identities=11% Similarity=0.137 Sum_probs=61.3
Q ss_pred EecCCCCchhHHHHHHhcccccccccC-CCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCc
Q 026112 97 FAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSL 175 (243)
Q Consensus 97 ivG~~naGKSSLin~L~~~~~~~~vs~-~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (243)
.-|..|+||||+--.+.... +..+. .--...|.+....++.+.++|||+... .. ....+. .+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~--~~~~~~~~~vd~D~~~~~~~yd~VIiD~p~~~~---~~-----~~~~l~-------~a 67 (139)
T cd02038 5 TSGKGGVGKTNISANLALAL--AKLGKRVLLLDADLGLANLDYDYIIIDTGAGIS---DN-----VLDFFL-------AA 67 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHH--HHCCCcEEEEECCCCCCCCCCCEEEEECCCCCC---HH-----HHHHHH-------hC
Confidence 44889999999976665431 10000 000001111111237899999998532 11 011221 28
Q ss_pred cEEEEEEeCCCCCChhhHHHHHHHHhc--CCcEEEEeecCCCCChHHHHHHHHHHHHHH
Q 026112 176 KRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESL 232 (243)
Q Consensus 176 d~v~~vvd~~~~~~~~~~~~~~~l~~~--~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l 232 (243)
|.++++++.+..-.......++.+... ..++.+|+|+++.. .+..+....+++.+
T Consensus 68 D~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~--~~~~~~~~~~~~~~ 124 (139)
T cd02038 68 DEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP--KEGKKVFKRLSNVS 124 (139)
T ss_pred CeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH--HHHHHHHHHHHHHH
Confidence 999999987642112223455555432 35788999999743 23333444444433
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00023 Score=62.20 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=28.6
Q ss_pred HHhhhhhhhhHHHhhcccCCCCCCCCCEEEEecCCCCchhHHHHHHhc
Q 026112 67 EENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ivG~~naGKSSLin~L~~ 114 (243)
...++.....++.-............-.|.++|-.|+||||.+-.|+.
T Consensus 76 ~~~vf~eL~kl~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~ 123 (483)
T KOG0780|consen 76 QKAVFDELVKLLDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAY 123 (483)
T ss_pred HHHHHHHHHHHhCCCCcccccccCCCcEEEEEeccCCCcceeHHHHHH
Confidence 333344444444333333222323344678999999999999988775
|
|
| >KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.86 E-value=3.7e-05 Score=60.61 Aligned_cols=116 Identities=12% Similarity=0.056 Sum_probs=68.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe--C-CcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--G-TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~--~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++++++|.-|.||||+.+..+.....-...+..|.......... | .++..|||+|...-. ..-..
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~g----------glrdg 78 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKG----------GLRDG 78 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeec----------ccccc
Confidence 3678999999999999999887655222223333344444333322 3 679999999964311 11112
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH--hcCCcEEEEeecCCCCChH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME--RSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~--~~~~p~i~v~nK~D~~~~~ 219 (243)
|+-. ..+.++++|....++-.. ..+.+.+. ..++|+++..||.|...+.
T Consensus 79 yyI~---~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~ 130 (216)
T KOG0096|consen 79 YYIQ---GQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARK 130 (216)
T ss_pred cEEe---cceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccc
Confidence 2222 567778888654322221 22332222 1258999999999987654
|
|
| >KOG1673 consensus Ras GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00013 Score=55.79 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=68.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCC---ceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG---LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~g---tT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
..+|.++|.+..|||||+-...+...-.......| ..+.+........+.+||.-|.++ +....
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~-------------~~n~l 86 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQRE-------------FINML 86 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHh-------------hhccC
Confidence 46899999999999999988888632111111122 233334444466789999999643 12111
Q ss_pred HhcccCccEEEEEEeCCCCCCh-hhHHHHHHHHhcC---CcEEEEeecCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKP-RDHELISLMERSQ---TKYQVVLTKTDTV 216 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~-~~~~~~~~l~~~~---~p~i~v~nK~D~~ 216 (243)
--...++-++++++|-+.+.+- .-.++.......+ +| ++|.+|.|++
T Consensus 87 Piac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~f 137 (205)
T KOG1673|consen 87 PIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLF 137 (205)
T ss_pred ceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhh
Confidence 1223447789999997654221 2245555554443 45 5679999986
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00015 Score=66.05 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+..++|+|++|+||||++..|++.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 458899999999999999999864
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00012 Score=62.04 Aligned_cols=119 Identities=22% Similarity=0.295 Sum_probs=63.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc-----ccccccC--CC-C---------ceEEEEEEE-----------------e
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSD--KP-G---------LTQTINFFK-----------------L 136 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~-----~~~~vs~--~~-g---------tT~~~~~~~-----------------~ 136 (243)
+..+++++|++|+||||++..|.... ....++. .. + ...++.+.. .
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 45799999999999999998887541 1111110 00 0 000111110 1
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
+..+.++||||-.... .+.+ +.+..+. .. ...+.+++|+|++... ..-.++++..... .+--+++||.|..
T Consensus 154 ~~D~ViIDt~Gr~~~~-~~~l-~el~~~~----~~-~~~~~~~LVl~a~~~~-~d~~~~~~~f~~~-~~~~~I~TKlDet 224 (270)
T PRK06731 154 RVDYILIDTAGKNYRA-SETV-EEMIETM----GQ-VEPDYICLTLSASMKS-KDMIEIITNFKDI-HIDGIVFTKFDET 224 (270)
T ss_pred CCCEEEEECCCCCcCC-HHHH-HHHHHHH----hh-hCCCeEEEEEcCccCH-HHHHHHHHHhCCC-CCCEEEEEeecCC
Confidence 4589999999964211 1111 1122222 21 1256789999986431 2223444444442 3346778999986
Q ss_pred Ch
Q 026112 217 FP 218 (243)
Q Consensus 217 ~~ 218 (243)
..
T Consensus 225 ~~ 226 (270)
T PRK06731 225 AS 226 (270)
T ss_pred CC
Confidence 53
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=97.82 E-value=7.5e-05 Score=58.83 Aligned_cols=50 Identities=18% Similarity=0.170 Sum_probs=36.1
Q ss_pred HhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHH
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~ 220 (243)
......+|++++|+|++.+....+..+++.+ .+.|+++|+||+|+.++..
T Consensus 14 ~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~~~~ 63 (171)
T cd01856 14 KEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLADPKK 63 (171)
T ss_pred HHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCChHH
Confidence 3334459999999999876555555555544 2579999999999976543
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=97.82 E-value=8.4e-05 Score=65.19 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=41.5
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCC--------Chh---hHHHHHHHHh----
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--------KPR---DHELISLMER---- 201 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~--------~~~---~~~~~~~l~~---- 201 (243)
+..+.++|..|.+. .++.|..+. . ++++|++|+|.++-. ... ...+++.+-.
T Consensus 183 ~~~~~~~DvgGqr~------~R~kW~~~f----~---~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~ 249 (342)
T smart00275 183 KLFFRMFDVGGQRS------ERKKWIHCF----D---NVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF 249 (342)
T ss_pred CeEEEEEecCCchh------hhhhHHHHh----C---CCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence 44688999999532 234454433 2 389999999977410 011 1222222221
Q ss_pred cCCcEEEEeecCCCCC
Q 026112 202 SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 202 ~~~p~i~v~nK~D~~~ 217 (243)
.+.|+++++||.|++.
T Consensus 250 ~~~piil~~NK~D~~~ 265 (342)
T smart00275 250 ANTSIILFLNKIDLFE 265 (342)
T ss_pred cCCcEEEEEecHHhHH
Confidence 2589999999999863
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=7.1e-05 Score=65.41 Aligned_cols=70 Identities=19% Similarity=0.095 Sum_probs=54.6
Q ss_pred HHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHH-hc-CCcEEEEeecCCCCChHHHHHHHHHHHHHHh
Q 026112 164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME-RS-QTKYQVVLTKTDTVFPIDVARRAMQIEESLK 233 (243)
Q Consensus 164 ~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~-~~-~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~ 233 (243)
+...+......+|+|+.|+|+.+++.....++-+++. .. +...|+|+||+|+++.+.+..++.+++.++-
T Consensus 136 Y~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~p 207 (435)
T KOG2484|consen 136 YDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGP 207 (435)
T ss_pred HHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCC
Confidence 3444444455599999999999988887777777774 33 3899999999999999888888888877643
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00038 Score=53.87 Aligned_cols=120 Identities=14% Similarity=0.104 Sum_probs=60.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCC-C---------CCCC------ccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLP-G---------YGFA------YAK 154 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTp-G---------~~~~------~~~ 154 (243)
...+|++.|+||+||||++..+...-......-.-+.|..+........|.++|+. | ++.. ..-
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v 83 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNV 83 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeH
Confidence 34699999999999999998887642100011111233333322223356677776 2 1111 011
Q ss_pred hHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC---CChhhHHHHHHHHhcCCcEEEEeecCCC
Q 026112 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG---VKPRDHELISLMERSQTKYQVVLTKTDT 215 (243)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~---~~~~~~~~~~~l~~~~~p~i~v~nK~D~ 215 (243)
+..++.....+++. ...+|++ ++|---+ .+....+.++.+-..+.|++.++.+-+.
T Consensus 84 ~~le~i~~~al~rA---~~~aDvI--IIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr 142 (179)
T COG1618 84 EGLEEIAIPALRRA---LEEADVI--IIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSR 142 (179)
T ss_pred HHHHHHhHHHHHHH---hhcCCEE--EEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccC
Confidence 11111111222222 2236765 4663222 2233345566666678899998887654
|
|
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0001 Score=60.32 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=32.7
Q ss_pred cCccEEEEEEeCCCCCChhhHHHHHHHHhcC-CcEEEEeecCCCC
Q 026112 173 VSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDTV 216 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~-~p~i~v~nK~D~~ 216 (243)
+.+|.++.|+|.+..--.....+-++....+ .++.+|+||+|..
T Consensus 154 ~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 154 EGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 3489999999987543233345556666778 8999999999965
|
|
| >KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=1.8e-05 Score=74.69 Aligned_cols=77 Identities=19% Similarity=0.312 Sum_probs=49.6
Q ss_pred cEEEEeCCCCCCC---ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCC-C-CChhhHHHHHHHHhcCCcEEEEeecC
Q 026112 139 KLCLVDLPGYGFA---YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-G-VKPRDHELISLMERSQTKYQVVLTKT 213 (243)
Q Consensus 139 ~~~liDTpG~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~-~-~~~~~~~~~~~l~~~~~p~i~v~nK~ 213 (243)
.++++|+||+... ..++.+...+..+...|... .+++++.+.+.. . .+.....+.......+.+.+.|++|.
T Consensus 133 ~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~---~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~ 209 (657)
T KOG0446|consen 133 NLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEK---PNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKF 209 (657)
T ss_pred hhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccc---cchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhH
Confidence 6889999998653 34556777778888888776 566666665332 1 12222344444455567788888888
Q ss_pred CCCCh
Q 026112 214 DTVFP 218 (243)
Q Consensus 214 D~~~~ 218 (243)
|+++.
T Consensus 210 Dlmdk 214 (657)
T KOG0446|consen 210 DFMDK 214 (657)
T ss_pred Hhhhc
Confidence 87644
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00046 Score=61.28 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=19.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~ 114 (243)
..-.|+++|--|+||||..-.|..
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~ 122 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAK 122 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHH
Confidence 345778999999999999877764
|
|
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00014 Score=64.38 Aligned_cols=148 Identities=20% Similarity=0.280 Sum_probs=78.2
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccc------------cc--ccccCCCC---ceEEEEEEE-----------eCCcEE
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQW------------GV--VRTSDKPG---LTQTINFFK-----------LGTKLC 141 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~------------~~--~~vs~~~g---tT~~~~~~~-----------~~~~~~ 141 (243)
.+..-|+++|+--+|||||+.++...- +. ......+| .|..+.|.+ ...++.
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR 94 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR 94 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence 466789999999999999999987521 00 11122233 233333332 135789
Q ss_pred EEeCCCCCCCcc----chH----HHHHHHH----HHH-------HHHhcccCccEEEEEEeCCCC-CC-----hhhHHHH
Q 026112 142 LVDLPGYGFAYA----KEE----VKDAWEE----LVK-------EYVSTRVSLKRVCLLIDTKWG-VK-----PRDHELI 196 (243)
Q Consensus 142 liDTpG~~~~~~----~~~----~~~~~~~----~~~-------~~~~~~~~~d~v~~vvd~~~~-~~-----~~~~~~~ 196 (243)
++||-||.-..+ .++ +...|.. +-. +.+.. +..-++++-.|.+-+ +. .....++
T Consensus 95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~d-HSTIGiVVTTDGSi~dipRe~Y~eAEervI 173 (492)
T PF09547_consen 95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITD-HSTIGIVVTTDGSITDIPRENYVEAEERVI 173 (492)
T ss_pred EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceecc-CCceeEEEecCCCccCCChHHHHHHHHHHH
Confidence 999999742110 000 0111110 111 11110 112234445565432 21 2336788
Q ss_pred HHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 197 SLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 197 ~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
+.|+..++|+++++|-.+=..++ .......+.+ .++.++.|+
T Consensus 174 ~ELk~igKPFvillNs~~P~s~e-t~~L~~eL~e---kY~vpVlpv 215 (492)
T PF09547_consen 174 EELKEIGKPFVILLNSTKPYSEE-TQELAEELEE---KYDVPVLPV 215 (492)
T ss_pred HHHHHhCCCEEEEEeCCCCCCHH-HHHHHHHHHH---HhCCcEEEe
Confidence 99999999999999988855443 3333333333 344455543
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >KOG3905 consensus Dynein light intermediate chain [Cell motility] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0032 Score=54.07 Aligned_cols=27 Identities=22% Similarity=0.371 Sum_probs=24.3
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
+.+..|+++|..++||||||..|-+.+
T Consensus 50 psgk~VlvlGdn~sGKtsLi~klqg~e 76 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKLQGSE 76 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHhhccc
Confidence 467899999999999999999998874
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0007 Score=50.20 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.8
Q ss_pred EEEecCCCCchhHHHHHHhcc
Q 026112 95 IAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~ 115 (243)
|++.|++|+|||++++.++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 678999999999999999987
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00011 Score=67.06 Aligned_cols=112 Identities=16% Similarity=0.126 Sum_probs=62.8
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCc-----eEEEEEEEe-CCcEEEEeCCCCCCCccchHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL-----TQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gt-----T~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~ 163 (243)
...+.+.++|+.|+|||.|+++++|+ .... ...++ +........ ...+.+-|.+-. .. .
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr-~~~~--~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~-----------~ 487 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGR-SMSD--NNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQ-----------D 487 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhcc-cccc--ccccCCCCceeeeeeeeccccceEEEeecCcc-cc-----------c
Confidence 35678999999999999999999997 2222 22222 222111111 122333333321 10 0
Q ss_pred HHHHHHhcccCccEEEEEEeCCCCCChhhH-HHHHHH-HhcCCcEEEEeecCCCCChH
Q 026112 164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLM-ERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 164 ~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~-~~~~~l-~~~~~p~i~v~nK~D~~~~~ 219 (243)
+... ....+|++++++|++++-..... .+++.- .....|+++|.+|+|+.+..
T Consensus 488 ~l~~---ke~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~ 542 (625)
T KOG1707|consen 488 FLTS---KEAACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVP 542 (625)
T ss_pred cccC---ccceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchhh
Confidence 0000 00238999999999865333221 222211 12478999999999998654
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00013 Score=58.40 Aligned_cols=43 Identities=14% Similarity=-0.110 Sum_probs=30.4
Q ss_pred CccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 174 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 174 ~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
.+|++++|+|++.........+ .....+.|+++|+||+|+...
T Consensus 34 ~ad~il~VvD~~~~~~~~~~~l--~~~~~~~~~ilV~NK~Dl~~~ 76 (190)
T cd01855 34 KKALVVHVVDIFDFPGSLIPRL--RLFGGNNPVILVGNKIDLLPK 76 (190)
T ss_pred CCcEEEEEEECccCCCccchhH--HHhcCCCcEEEEEEchhcCCC
Confidence 3899999999876543333333 122346899999999999754
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00024 Score=63.99 Aligned_cols=111 Identities=21% Similarity=0.251 Sum_probs=71.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccccccc-CCCCc---------------eEEE---EEE-E---------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKPGL---------------TQTI---NFF-K--------------- 135 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs-~~~gt---------------T~~~---~~~-~--------------- 135 (243)
+..++.++.....|||||...|..+.. +++ ..+|- |... ..+ .
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAg--Iis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAG--IISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhc--eeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 445677778889999999999998642 222 22331 2111 111 0
Q ss_pred eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCC
Q 026112 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDT 215 (243)
Q Consensus 136 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~ 215 (243)
.+.-+.+||.||+.+.+ .-+.. ..+-.|+.++|+|.-.++--+...++...-...+.-++|+||.|.
T Consensus 96 ~~FLiNLIDSPGHVDFS----------SEVTA---ALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFS----------SEVTA---ALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDR 162 (842)
T ss_pred cceeEEeccCCCcccch----------hhhhh---eeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhH
Confidence 13468899999986521 11111 222379999999987777777777776666556766788999996
Q ss_pred C
Q 026112 216 V 216 (243)
Q Consensus 216 ~ 216 (243)
.
T Consensus 163 A 163 (842)
T KOG0469|consen 163 A 163 (842)
T ss_pred H
Confidence 4
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00037 Score=59.64 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=36.1
Q ss_pred ccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChH
Q 026112 172 RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~ 219 (243)
...+|+|++|+|+..+....+..+.+.+. +.|+++|+||+|+.+..
T Consensus 22 l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~~ 67 (287)
T PRK09563 22 LKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADPE 67 (287)
T ss_pred hhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCHH
Confidence 34499999999998776666655655554 68999999999997653
|
|
| >KOG1533 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00022 Score=58.39 Aligned_cols=77 Identities=18% Similarity=0.201 Sum_probs=38.8
Q ss_pred CcEEEEeCCCCCCCcc-chHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCCh-hhH-HH---HHHHHhcCCcEEEEee
Q 026112 138 TKLCLVDLPGYGFAYA-KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-RDH-EL---ISLMERSQTKYQVVLT 211 (243)
Q Consensus 138 ~~~~liDTpG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~-~~~-~~---~~~l~~~~~p~i~v~n 211 (243)
..+.++|+||..+-.. .+.....++ ++....-.-+++.++|+-.--.+ ... .+ +.-+-....|-+=|+.
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~-----~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlS 171 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFR-----KLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLS 171 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHH-----HHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhh
Confidence 4799999999654321 121222222 22222223445667776421111 111 11 1112234789999999
Q ss_pred cCCCCChH
Q 026112 212 KTDTVFPI 219 (243)
Q Consensus 212 K~D~~~~~ 219 (243)
|+|+...-
T Consensus 172 K~Dl~~~y 179 (290)
T KOG1533|consen 172 KADLLKKY 179 (290)
T ss_pred HhHHHHhh
Confidence 99997543
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.48 E-value=7.1e-05 Score=61.84 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=22.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
+=-|+++|++|||||||+|.+.|-.
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4478999999999999999999964
|
|
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.47 E-value=9.7e-05 Score=56.14 Aligned_cols=53 Identities=23% Similarity=0.201 Sum_probs=32.0
Q ss_pred EEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE-eCCcEEEEeCCC
Q 026112 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-LGTKLCLVDLPG 147 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~-~~~~~~liDTpG 147 (243)
|+|+|++|+|||||++.|.+..........+.+|+...... .+..+.++|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~ 55 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEE 55 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHH
Confidence 68899999999999999998732122233344555443221 234455555433
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00046 Score=60.68 Aligned_cols=66 Identities=14% Similarity=0.178 Sum_probs=42.0
Q ss_pred cCccEEEEEEeCCCC-CChhh-HHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 173 VSLKRVCLLIDTKWG-VKPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~-~~~~~-~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
.++|.+++|+|...+ +.... ..++..+...++|+++|+||+|+..+.+... +.+.+...+..++++
T Consensus 88 aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~----~~~~~~~~g~~v~~i 155 (352)
T PRK12289 88 ANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQ----WQDRLQQWGYQPLFI 155 (352)
T ss_pred hcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHH----HHHHHHhcCCeEEEE
Confidence 349999999998753 22221 2344444556899999999999987654432 334444555555554
|
|
| >PRK14737 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00014 Score=58.29 Aligned_cols=39 Identities=15% Similarity=0.043 Sum_probs=29.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI 131 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~ 131 (243)
+..|+|+|++|+|||||++.|+.... ......+-|||..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~-~~~~~v~~TTR~~ 42 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHP-DFLFSISCTTRAP 42 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCC-ccccccCccCCCC
Confidence 45788999999999999999998732 2334455677654
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00062 Score=53.69 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=19.7
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
+|+++|.+|+|||||+..+.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999987654
|
|
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00068 Score=49.64 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=20.0
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
+|+++|..|+|||+|+.++...
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~ 23 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQF 23 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcC
Confidence 7899999999999999999655
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0021 Score=46.46 Aligned_cols=97 Identities=16% Similarity=0.231 Sum_probs=52.5
Q ss_pred ecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccE
Q 026112 98 AGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKR 177 (243)
Q Consensus 98 vG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 177 (243)
-+..|+||||+--.|.... +......-.-.|.... .+..+.++|||+.... . ....+. .+|.
T Consensus 6 ~~kgg~gkt~~~~~la~~~--~~~~~~~~~l~d~d~~-~~~D~IIiDtpp~~~~---~-----~~~~l~-------~aD~ 67 (106)
T cd03111 6 GAKGGVGATTLAANLAVAL--AKEAGRRVLLVDLDLQ-FGDDYVVVDLGRSLDE---V-----SLAALD-------QADR 67 (106)
T ss_pred CCCCCCcHHHHHHHHHHHH--HhcCCCcEEEEECCCC-CCCCEEEEeCCCCcCH---H-----HHHHHH-------HcCe
Confidence 3788999999876666541 1110111011111111 1337999999996431 0 011222 1899
Q ss_pred EEEEEeCCCCCChhhHHHHHHHHhcC----CcEEEEeec
Q 026112 178 VCLLIDTKWGVKPRDHELISLMERSQ----TKYQVVLTK 212 (243)
Q Consensus 178 v~~vvd~~~~~~~~~~~~~~~l~~~~----~p~i~v~nK 212 (243)
++++++.+..-...-..+++.+...+ .++.+|+|+
T Consensus 68 vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 68 VFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred EEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 99999876432233345566665543 357788885
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00019 Score=56.74 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=22.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.|+|+|++|+|||||+|.+.|-
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhc
Confidence 4568999999999999999999986
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00027 Score=45.92 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.3
Q ss_pred CEEEEecCCCCchhHHHHHHhc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~ 114 (243)
...+|.|++|+|||||+.++.-
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988764
|
|
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00014 Score=57.60 Aligned_cols=23 Identities=39% Similarity=0.523 Sum_probs=21.1
Q ss_pred EEEEecCCCCchhHHHHHHhccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.|+++|++|||||||++.|.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 68999999999999999999863
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00085 Score=58.52 Aligned_cols=69 Identities=19% Similarity=0.214 Sum_probs=42.8
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC--CChhh---------HHHHHHHHhc---
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRD---------HELISLMERS--- 202 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~--~~~~~---------~~~~~~l~~~--- 202 (243)
+..+.++|.+|.+. -++.|-.+. .++++|++|++.++- ...++ ..+++.+-..
T Consensus 194 ~~~f~~~DvGGQRs------eRrKWihcF-------e~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F 260 (354)
T KOG0082|consen 194 GLKFRMFDVGGQRS------ERKKWIHCF-------EDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWF 260 (354)
T ss_pred CCceEEEeCCCcHH------HhhhHHHhh-------cCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccc
Confidence 66899999999642 233444433 338999999986531 11111 2233333221
Q ss_pred -CCcEEEEeecCCCCCh
Q 026112 203 -QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 203 -~~p~i~v~nK~D~~~~ 218 (243)
..++++.+||.|++.+
T Consensus 261 ~~tsiiLFLNK~DLFeE 277 (354)
T KOG0082|consen 261 ANTSIILFLNKKDLFEE 277 (354)
T ss_pred ccCcEEEEeecHHHHHH
Confidence 5789999999999753
|
|
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0021 Score=50.36 Aligned_cols=64 Identities=11% Similarity=0.079 Sum_probs=40.2
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCC-cEEEEeecCCCCC
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDTVF 217 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~-p~i~v~nK~D~~~ 217 (243)
.+.++|||+-... . ....+ ..+|.++++++....-......+++.+...+. ...+|+|++|...
T Consensus 64 d~viiD~p~~~~~---~---------~~~~l---~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIER---G---------FITAI---APADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcH---H---------HHHHH---HhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence 7999999985321 0 11111 12899999998764322333456666666554 4678999998754
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.25 E-value=1.7e-05 Score=62.43 Aligned_cols=131 Identities=15% Similarity=0.177 Sum_probs=70.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe----CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
...++.++|+-++||||++...+........-..-|.......... -.+..+||.+|... +..+.+
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQer----------fg~mtr 93 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQER----------FGNMTR 93 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhh----------hcceEE
Confidence 3468999999999999999887765210000001111111111111 13577999999521 112222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH-h------cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-R------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN 235 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~-~------~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~ 235 (243)
-|+. ++++.++|+|.+...+.+. ..+.+.+- . ..+|+++..||||.-.. ...+....+.++..++
T Consensus 94 Vyyk---ea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~-a~~~~~~~~d~f~ken 166 (229)
T KOG4423|consen 94 VYYK---EAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKS-AKNEATRQFDNFKKEN 166 (229)
T ss_pred EEec---CCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChH-hhhhhHHHHHHHHhcc
Confidence 2333 3888899999876644433 22322221 1 13678999999998643 2333333444444443
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0024 Score=44.29 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=42.7
Q ss_pred EEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccC
Q 026112 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVS 174 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (243)
+++.|..|+||||+...|...- .. . |. .+.. .+ .+.++|+||....... . .......
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l--~~-~---g~--~v~~--~~-d~iivD~~~~~~~~~~---------~---~~~~~~~ 58 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAAL--AK-R---GK--RVLL--ID-DYVLIDTPPGLGLLVL---------L---CLLALLA 58 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHH--HH-C---CC--eEEE--EC-CEEEEeCCCCccchhh---------h---hhhhhhh
Confidence 6788999999999999888762 11 1 11 1111 11 7999999996542110 0 0111123
Q ss_pred ccEEEEEEeCCCC
Q 026112 175 LKRVCLLIDTKWG 187 (243)
Q Consensus 175 ~d~v~~vvd~~~~ 187 (243)
+|.++++++....
T Consensus 59 ~~~vi~v~~~~~~ 71 (99)
T cd01983 59 ADLVIIVTTPEAL 71 (99)
T ss_pred CCEEEEecCCchh
Confidence 8999999887643
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00052 Score=60.26 Aligned_cols=134 Identities=16% Similarity=0.156 Sum_probs=80.3
Q ss_pred CCCCCCCEEEEecCCCCchhHHHHHHhccc----------------ccccccC-------------CCCceEEEEE---E
Q 026112 87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQW----------------GVVRTSD-------------KPGLTQTINF---F 134 (243)
Q Consensus 87 ~~~~~~~~I~ivG~~naGKSSLin~L~~~~----------------~~~~vs~-------------~~gtT~~~~~---~ 134 (243)
.+.....++.|+|.--+||||.-..|.... .....+. ..|.|..+-. .
T Consensus 74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE 153 (501)
T ss_pred CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence 344567899999999999999987766421 0011111 1223444322 2
Q ss_pred EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCCh-------hhHHHHHHHHhcC-CcE
Q 026112 135 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-------RDHELISLMERSQ-TKY 206 (243)
Q Consensus 135 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~-------~~~~~~~~l~~~~-~p~ 206 (243)
.....+.++|+||+- .++..++..+..+|+-++|+.+..+.-. +..+...+.+..+ ...
T Consensus 154 te~~~ftiLDApGHk-------------~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~l 220 (501)
T KOG0459|consen 154 TENKRFTILDAPGHK-------------SFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHL 220 (501)
T ss_pred ecceeEEeeccCccc-------------ccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceE
Confidence 236789999999974 3455566666778999999887432111 2233334444444 468
Q ss_pred EEEeecCCCCChH----HHHHHHHHHHHHHh
Q 026112 207 QVVLTKTDTVFPI----DVARRAMQIEESLK 233 (243)
Q Consensus 207 i~v~nK~D~~~~~----~~~~~~~~l~~~l~ 233 (243)
++++||+|-.... ...+..+.+...+.
T Consensus 221 Vv~vNKMddPtvnWs~eRy~E~~~k~~~fLr 251 (501)
T KOG0459|consen 221 IVLINKMDDPTVNWSNERYEECKEKLQPFLR 251 (501)
T ss_pred EEEEEeccCCccCcchhhHHHHHHHHHHHHH
Confidence 9999999977432 23344444444444
|
|
| >cd03110 Fer4_NifH_child This protein family's function is unkown | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0047 Score=48.74 Aligned_cols=82 Identities=17% Similarity=0.047 Sum_probs=52.2
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
.+.+.++|||+... + .....+ ..+|.+++++..+......-..+++.++..+.|+.+|+||+|..
T Consensus 92 ~~d~viiDtpp~~~----~--------~~~~~l---~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~ 156 (179)
T cd03110 92 GAELIIIDGPPGIG----C--------PVIASL---TGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN 156 (179)
T ss_pred CCCEEEEECcCCCc----H--------HHHHHH---HcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 56899999997532 1 011111 22899999998764322333567777777888999999999975
Q ss_pred ChHHHHHHHHHHHHHHhhCCCc
Q 026112 217 FPIDVARRAMQIEESLKANNSL 238 (243)
Q Consensus 217 ~~~~~~~~~~~l~~~l~~~~~~ 238 (243)
.. ....+++.++..+.+
T Consensus 157 ~~-----~~~~~~~~~~~~~~~ 173 (179)
T cd03110 157 DE-----IAEEIEDYCEEEGIP 173 (179)
T ss_pred cc-----hHHHHHHHHHHcCCC
Confidence 43 122344555555543
|
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0011 Score=57.07 Aligned_cols=67 Identities=18% Similarity=0.125 Sum_probs=41.5
Q ss_pred cCccEEEEEEeCCCCCC-hh-hHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 173 VSLKRVCLLIDTKWGVK-PR-DHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~-~~-~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
.++|.+++|+|+..+.. .. ...++..+...++|+++|+||+|+....+. ...+.+.+...+..++++
T Consensus 79 aniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~---~~~~~~~~~~~g~~v~~v 147 (298)
T PRK00098 79 ANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEE---ARELLALYRAIGYDVLEL 147 (298)
T ss_pred ecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHH---HHHHHHHHHHCCCeEEEE
Confidence 45899999999865422 22 134555566778999999999999743221 222333344445555554
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00026 Score=53.26 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=23.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|+|||||++.|++..
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 34588999999999999999999984
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00015 Score=57.47 Aligned_cols=38 Identities=26% Similarity=0.199 Sum_probs=27.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI 131 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~ 131 (243)
+.-+++.|++|+|||||+++|+... ...-.+..|||..
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~--~l~~SVS~TTR~p 41 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD--KLRFSVSATTRKP 41 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc--CeEEEEEeccCCC
Confidence 4578899999999999999999884 2222233456554
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0019 Score=54.04 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=33.8
Q ss_pred CccEEEEEEeCCCCC-Chhh-HHHHHHHHhcCCcEEEEeecCCCCChHH
Q 026112 174 SLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 174 ~~d~v~~vvd~~~~~-~~~~-~~~~~~l~~~~~p~i~v~nK~D~~~~~~ 220 (243)
.+|.+++|+|...+. +... ..++..+...++|+++|+||+|+.+...
T Consensus 36 n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~ 84 (245)
T TIGR00157 36 NIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDED 84 (245)
T ss_pred cCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHH
Confidence 389999999987543 2222 3455555567899999999999976543
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00033 Score=57.54 Aligned_cols=26 Identities=35% Similarity=0.294 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+=.|+|+|++|||||||+|.+.+-.
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44578999999999999999999873
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00044 Score=52.33 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.9
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.|+++|+||||||||...|...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999866
|
... |
| >KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0017 Score=53.54 Aligned_cols=117 Identities=17% Similarity=0.172 Sum_probs=64.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccccc----ccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR----TSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~----vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.|+|+++|.--+||||.-...+.+- ... .......|++-.. ..-..+.+||.||..+.-.+.- .++.+.+.
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkM-sPneTlflESTski~~d~is-~sfinf~v~dfPGQ~~~Fd~s~---D~e~iF~~ 101 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKM-SPNETLFLESTSKITRDHIS-NSFINFQVWDFPGQMDFFDPSF---DYEMIFRG 101 (347)
T ss_pred CceEEEEeecccCcchhhheeeecc-CCCceeEeeccCcccHhhhh-hhhcceEEeecCCccccCCCcc---CHHHHHhc
Confidence 4889999999999999988777651 111 1111111221100 0124688999999654321110 01222222
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHh-----cCCcEEEEeecCCCCChHH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-----SQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~-----~~~p~i~v~nK~D~~~~~~ 220 (243)
+-.+++|+|+.....+.-..+...+.. .++.+=+.+.|.|.+..+.
T Consensus 102 -------~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~ 152 (347)
T KOG3887|consen 102 -------VGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDF 152 (347)
T ss_pred -------cCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhh
Confidence 678999999864322111111111111 2467888999999987654
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0044 Score=52.95 Aligned_cols=27 Identities=26% Similarity=0.523 Sum_probs=24.4
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+.|+++++|.+|.|||++++.+...+
T Consensus 59 ~Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 59 HRMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred cCCCceEEecCCCCcHHHHHHHHHHHC
Confidence 467899999999999999999999874
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0037 Score=46.54 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=21.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...+.++|++|+|||+|++.+...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999987
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0015 Score=41.53 Aligned_cols=40 Identities=23% Similarity=0.261 Sum_probs=25.1
Q ss_pred ccEEEEEEeCCC--CCCh-hhHHHHHHHHhc--CCcEEEEeecCC
Q 026112 175 LKRVCLLIDTKW--GVKP-RDHELISLMERS--QTKYQVVLTKTD 214 (243)
Q Consensus 175 ~d~v~~vvd~~~--~~~~-~~~~~~~~l~~~--~~p~i~v~nK~D 214 (243)
.++|+|++|.+. |.+- ....+++.++.. +.|+++|+||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 688999999765 4433 335677777765 799999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00037 Score=51.25 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.5
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
+|+|.|+|||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999987
|
... |
| >PRK14738 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00047 Score=56.09 Aligned_cols=25 Identities=24% Similarity=0.411 Sum_probs=21.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....|+|+|++|||||||++.|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3456788999999999999999865
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00049 Score=54.68 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|++|+|||||++.|+|.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 4568999999999999999999997
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0022 Score=54.86 Aligned_cols=47 Identities=17% Similarity=0.225 Sum_probs=34.9
Q ss_pred cCccEEEEEEeCCCCC-Chhh-HHHHHHHHhcCCcEEEEeecCCCCChH
Q 026112 173 VSLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~-~~~~-~~~~~~l~~~~~p~i~v~nK~D~~~~~ 219 (243)
.++|.+++|+|+..+. +... ..++..+...++|+++|+||+|+.++.
T Consensus 77 anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~ 125 (287)
T cd01854 77 ANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDE 125 (287)
T ss_pred EeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChH
Confidence 3489999999987664 3222 345555666789999999999998653
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >KOG4181 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.005 Score=53.32 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=23.3
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
...-.|+++|.-|+|||||++.|.++.
T Consensus 186 tdf~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 186 TDFTVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred CCeeEEEeecCCCccHHHHHHHHhccC
Confidence 345688999999999999999999863
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00058 Score=55.72 Aligned_cols=26 Identities=23% Similarity=0.251 Sum_probs=23.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999973
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00045 Score=60.09 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
+--++++|++|||||||++.++|-.
T Consensus 29 Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 29 GEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3367899999999999999999964
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00052 Score=55.76 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.9
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+.+..|+|+|++|||||||.++|.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999875
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00055 Score=55.64 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=21.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+ .++++|++|+|||||++.|+|.
T Consensus 26 g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 26 G-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred C-cEEEECCCCCCHHHHHHHHhCC
Confidence 5 8999999999999999999986
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00062 Score=55.30 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=23.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45588999999999999999999973
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00069 Score=53.77 Aligned_cols=25 Identities=24% Similarity=0.171 Sum_probs=21.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|++|+|||||++.++..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 4568999999999999999999753
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00074 Score=54.58 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=22.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+..|+|+|++|+|||||.+.|.+..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35578999999999999999999873
|
|
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0006 Score=52.03 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=20.5
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
|.|+++|+.|+|||||+..|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998876
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00067 Score=55.41 Aligned_cols=26 Identities=35% Similarity=0.309 Sum_probs=23.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 45589999999999999999999973
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00064 Score=54.32 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+-.++++|++|+|||||+++|++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 458999999999999999999986
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00069 Score=56.06 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999973
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0025 Score=57.21 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=42.9
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHhcCCc---EEEEee
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERSQTK---YQVVLT 211 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~~~p---~i~v~n 211 (243)
|..+.++||+|=... ...+...+..++ .....|.|++|-.+.-+-...+ ..+-+.+.....| --++++
T Consensus 466 gfDVvLiDTAGR~~~--~~~lm~~l~k~~-----~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~lt 538 (587)
T KOG0781|consen 466 GFDVVLIDTAGRMHN--NAPLMTSLAKLI-----KVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLT 538 (587)
T ss_pred CCCEEEEeccccccC--ChhHHHHHHHHH-----hcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEE
Confidence 568999999995431 222222233332 2345899999976654422222 2333444444444 347899
Q ss_pred cCCCCCh
Q 026112 212 KTDTVFP 218 (243)
Q Consensus 212 K~D~~~~ 218 (243)
|+|.++.
T Consensus 539 k~dtv~d 545 (587)
T KOG0781|consen 539 KFDTVDD 545 (587)
T ss_pred eccchhh
Confidence 9998764
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00073 Score=54.85 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|+|||||+.+|-+-+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 45589999999999999999998753
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0034 Score=55.51 Aligned_cols=71 Identities=13% Similarity=-0.009 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHH-HHHHHHHHHHHHhhCC
Q 026112 161 WEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANN 236 (243)
Q Consensus 161 ~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~-~~~~~~~l~~~l~~~~ 236 (243)
+..+...+.. .++++++|+|+.+.......++.+.+. +.|+++|+||+|+..... .....+.+++.+...+
T Consensus 53 f~~~l~~~~~---~~~~Il~VvD~~d~~~s~~~~l~~~~~--~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g 124 (360)
T TIGR03597 53 FLNLLNSLGD---SNALIVYVVDIFDFEGSLIPELKRFVG--GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELG 124 (360)
T ss_pred HHHHHhhccc---CCcEEEEEEECcCCCCCccHHHHHHhC--CCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcC
Confidence 3444444433 378999999986543333334444432 689999999999975431 2233333444444444
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00075 Score=54.62 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|++|+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4558999999999999999999997
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00076 Score=56.51 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|+.|||||||+++|.+-
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4557899999999999999999984
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00082 Score=53.75 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=22.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|+|||||++.|+|..
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34588999999999999999999973
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0094 Score=51.79 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=22.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~ 114 (243)
.+|+++++|++++|||||...|++
T Consensus 102 ~GPrv~vVGp~d~GKsTl~r~L~n 125 (415)
T KOG2749|consen 102 YGPRVMVVGPTDVGKSTLCRILLN 125 (415)
T ss_pred cCCEEEEECCCccchHHHHHHHHH
Confidence 479999999999999999999886
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.00083 Score=54.69 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=23.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999973
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.00084 Score=55.21 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|++|+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999999999997
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00085 Score=54.91 Aligned_cols=26 Identities=31% Similarity=0.295 Sum_probs=23.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|+|||||++.|+|..
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999973
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00089 Score=52.32 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=23.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|.|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999973
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00088 Score=54.86 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=22.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++|+|++|+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4558899999999999999999997
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.00095 Score=51.09 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45578999999999999999999973
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0042 Score=51.92 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=19.2
Q ss_pred EEEecCCCCchhHHHHHHhcc
Q 026112 95 IAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~ 115 (243)
|+++|.|||||||+...|...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999865
|
Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.00091 Score=54.43 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|+|||||++.|+|..
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45588999999999999999999973
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.00093 Score=53.71 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=23.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45589999999999999999999973
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.00093 Score=54.31 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=23.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999973
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.00089 Score=54.14 Aligned_cols=26 Identities=31% Similarity=0.270 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|+|||||++.|+|..
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999973
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.00094 Score=54.35 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|++|+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4558999999999999999999996
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.00094 Score=54.85 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=23.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|+|||||++.|+|..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999973
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0055 Score=53.86 Aligned_cols=69 Identities=12% Similarity=-0.002 Sum_probs=41.9
Q ss_pred cCccEEEEEEeCCCCCChhh-HHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 173 VSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
.++|.+++|++....++... ..++......++|.++|+||+|+.+..+... ...+.+.+...+..++++
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~-~~~~~~~y~~~g~~v~~v 188 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAF-VNEQLDIYRNIGYRVLMV 188 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHH-HHHHHHHHHhCCCeEEEE
Confidence 34889888888664443332 2344455666899999999999987543222 223333444455555554
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.00098 Score=54.14 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45578999999999999999999973
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0021 Score=53.09 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....|+|.|++|||||||++.|.+.
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999986
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.00098 Score=55.37 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|+|||||++.|+|..
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45589999999999999999999863
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.00092 Score=54.72 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999999973
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0009 Score=52.85 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..+.++|+|++|+|||||+++|...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 3568899999999999999998865
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.00092 Score=54.70 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|+|||||++.|.|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999873
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.006 Score=43.55 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=40.4
Q ss_pred EEEec-CCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhccc
Q 026112 95 IAFAG-RSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (243)
Q Consensus 95 I~ivG-~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (243)
|++.| ..|+||||+--.|.... +. ...+-.-.|.. ....+.++|||+.... . ....+..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~--~~-~~~~vl~~d~d---~~~d~viiD~p~~~~~---~-----~~~~l~~------ 61 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAAL--AR-RGKRVLLIDLD---PQYDYIIIDTPPSLGL---L-----TRNALAA------ 61 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHH--Hh-CCCcEEEEeCC---CCCCEEEEeCcCCCCH---H-----HHHHHHH------
Confidence 56666 77999999987766542 11 11110111111 1267999999996431 0 0112222
Q ss_pred CccEEEEEEeCCC
Q 026112 174 SLKRVCLLIDTKW 186 (243)
Q Consensus 174 ~~d~v~~vvd~~~ 186 (243)
+|.++++++.+.
T Consensus 62 -ad~viv~~~~~~ 73 (104)
T cd02042 62 -ADLVLIPVQPSP 73 (104)
T ss_pred -CCEEEEeccCCH
Confidence 899999998764
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.001 Score=54.42 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|+|||||++.|+|..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999999973
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0043 Score=54.76 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=35.5
Q ss_pred cCccEEEEEEeCCCCCChh-hHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 173 VSLKRVCLLIDTKWGVKPR-DHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
.++|.+++|++....+... ...++..+...+++.++|+||+|+.++
T Consensus 111 ANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~ 157 (356)
T PRK01889 111 ANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED 157 (356)
T ss_pred EeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC
Confidence 4589999999987555542 235666667788999999999999865
|
|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.00094 Score=52.78 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..++|+|++|||||||++.|...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999875
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.001 Score=54.18 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=23.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45589999999999999999999973
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0011 Score=53.52 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=23.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999999973
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0011 Score=54.25 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=22.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|++|+|||||++.|+|.
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458899999999999999999997
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.00086 Score=53.74 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=21.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
++-.|+++|++|||||||+|.+.|-
T Consensus 30 ~ge~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 30 SGELVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred CCCEEEEEcCCCccHHHHHHHHhcC
Confidence 3457889999999999999999985
|
|
| >PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0016 Score=55.00 Aligned_cols=60 Identities=22% Similarity=0.217 Sum_probs=42.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccC-CCCceEEEEEEEe------CCcEEEEeCCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFFKL------GTKLCLVDLPGYGF 150 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~-~~gtT~~~~~~~~------~~~~~liDTpG~~~ 150 (243)
+...|+|+|+..+|||.|+|.|++....-.+++ ...+|..+-.+.. +..+.++||.|+.+
T Consensus 20 ~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~ 86 (260)
T PF02263_consen 20 PVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGD 86 (260)
T ss_dssp BEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTT
T ss_pred CEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccc
Confidence 455789999999999999999998632223333 3356666544431 34699999999976
|
GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0011 Score=52.70 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=23.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45588999999999999999999973
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.00098 Score=52.58 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.3
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
+|+|+|.+|+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999999765
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0012 Score=52.36 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45588999999999999999999873
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0011 Score=44.13 Aligned_cols=21 Identities=43% Similarity=0.591 Sum_probs=19.6
Q ss_pred EEEecCCCCchhHHHHHHhcc
Q 026112 95 IAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~ 115 (243)
|++.|.+|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999999876
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0011 Score=54.71 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=23.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999973
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0011 Score=53.84 Aligned_cols=26 Identities=23% Similarity=0.265 Sum_probs=23.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999973
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0011 Score=55.67 Aligned_cols=26 Identities=23% Similarity=0.288 Sum_probs=23.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|+|||||++.|+|..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999973
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0011 Score=53.27 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=23.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999973
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 243 | ||||
| 1sul_A | 195 | Crystal Structure Of The Apo-Ysxc Length = 195 | 6e-25 | ||
| 1pui_A | 210 | Structure Of Engb Gtpase Length = 210 | 1e-24 | ||
| 3pqc_A | 195 | Crystal Structure Of Thermotoga Maritima Ribosome B | 4e-24 | ||
| 4dhe_A | 223 | Crystal Structure Of A Probable Gtp-Binding Protein | 2e-19 | ||
| 1puj_A | 282 | Structure Of B. Subtilis Ylqf Gtpase Length = 282 | 4e-05 | ||
| 2cxx_A | 190 | Crystal Structure Of A Probable Gtp-binding Protein | 5e-05 | ||
| 3qq5_A | 423 | Crystal Structure Of The [fefe]-Hydrogenase Maturat | 4e-04 | ||
| 2dyk_A | 161 | Crystal Structure Of N-Terminal Gtp-Binding Domain | 6e-04 |
| >pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc Length = 195 | Back alignment and structure |
|
| >pdb|1PUI|A Chain A, Structure Of Engb Gtpase Length = 210 | Back alignment and structure |
|
| >pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN COMPLEX WITH GDP Length = 195 | Back alignment and structure |
|
| >pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb From Burkholderia Thailandensis Length = 223 | Back alignment and structure |
|
| >pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase Length = 282 | Back alignment and structure |
|
| >pdb|2CXX|A Chain A, Crystal Structure Of A Probable Gtp-binding Protein Engb Length = 190 | Back alignment and structure |
|
| >pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation Protein Hydf Length = 423 | Back alignment and structure |
|
| >pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga From Thermus Thermophilus Hb8 Length = 161 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 Length = 210 | Back alignment and structure |
|---|
Score = 190 bits (484), Expect = 4e-61
Identities = 65/175 (37%), Positives = 92/175 (52%)
Query: 69 NIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT 128
N+ + F +A P+ E+AFAGRSN GKSS LN LT Q + RTS PG T
Sbjct: 3 NLNYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRT 62
Query: 129 QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV 188
Q IN F++ LVDLPGYG+A EE+K W+ + EY+ R SL+ + +L+D + +
Sbjct: 63 QLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL 122
Query: 189 KPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243
K D ++I S V+LTK D + + + E++ A N VQ
Sbjct: 123 KDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVET 177
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* Length = 195 | Back alignment and structure |
|---|
Score = 189 bits (482), Expect = 6e-61
Identities = 57/163 (34%), Positives = 90/163 (55%)
Query: 73 NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
K E +A +P LPEIA AGRSNVGKSS +N+L + + RTS KPG TQT+N
Sbjct: 4 TKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLN 63
Query: 133 FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 192
F+ + +L VD+PGYGFA + ++AW +++ Y++TR LK V ++D + D
Sbjct: 64 FYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDD 123
Query: 193 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN 235
++ ++ V+ TK D + + A + ++L +
Sbjct: 124 VQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNID 166
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A Length = 195 | Back alignment and structure |
|---|
Score = 185 bits (471), Expect = 2e-59
Identities = 56/161 (34%), Positives = 89/161 (55%), Gaps = 1/161 (0%)
Query: 73 NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
+E A+ +P P E+AF GRSNVGKSS+LNAL + + S PG T++IN
Sbjct: 4 RDVELVKVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNR-KIAFVSKTPGKTRSIN 62
Query: 133 FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 192
F+ + +K VDLPGYG+A ++ + W+ LV++Y R SL+ V LL+D + + D
Sbjct: 63 FYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSD 122
Query: 193 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 233
++ M+ + +VLTK D V + A++ + +
Sbjct: 123 LMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFS 163
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} Length = 223 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 3e-58
Identities = 56/173 (32%), Positives = 79/173 (45%), Gaps = 4/173 (2%)
Query: 73 NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
++ FF P PEIAFAGRSN GKS+ +N L Q + S PG TQ IN
Sbjct: 10 HQARFFTTVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN 69
Query: 133 FFKLG----TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV 188
+F +G LVDLPGYG+A K WE+L+ Y+ TR L + L++D + +
Sbjct: 70 YFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPL 129
Query: 189 KPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 241
D +I + +LTK D + + ++SL A
Sbjct: 130 TELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYA 182
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Length = 190 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 2e-37
Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 18/166 (10%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 151
+ I FAGRSNVGKS+++ LT + VR +PG+T+ I + ++D+PG+GF
Sbjct: 1 MATIIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWKNHK-IIDMPGFGFM 57
Query: 152 YAKE-EVKDAWEELVKEYVSTRV-SLKRVCLLIDTK-----------WGVKPRDHELISL 198
EV++ ++ + ++ ++ L++D K G P D E
Sbjct: 58 MGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQF 117
Query: 199 MERSQTKYQVVLTKTDTVFPIDVARRAMQI--EESLKANNSLVQPV 242
+ V + K D + + + E L + + P+
Sbjct: 118 LRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPI 163
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 88.2 bits (218), Expect = 2e-20
Identities = 27/173 (15%), Positives = 56/173 (32%), Gaps = 18/173 (10%)
Query: 64 ERIEENIFRNKLEFFAAAKVSSSFPAPD--LPEIAFAGRSNVGKSSMLNALTRQWG---V 118
IE + ++ + +S + D + +A G + GKSS +N L
Sbjct: 40 NLIELRMRAGNIQL-TNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEG 98
Query: 119 VRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLK 176
+ +T + +K + DLPG G + Y+ +
Sbjct: 99 AAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPD----------TYLEKMKFYE 148
Query: 177 RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229
+I + K D ++ + + ++ V TK D+ + +
Sbjct: 149 YDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFD 201
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 2e-10
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 21/130 (16%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-----QTINFFKLGTKLCLVDLPGYG 149
I AGR NVGKSS +NAL Q V SD G T +++ +G + LVD PG
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQ-NVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGL- 93
Query: 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRV---CLLIDTKWGVKPRDHELISLMERSQTKY 206
++V + V+ R R L+ D+ P + ++++L + + +
Sbjct: 94 -----DDVGELGRLRVE---KARRVFYRADCGILVTDSAPT--PYEDDVVNLFKEMEIPF 143
Query: 207 QVVLTKTDTV 216
VV+ K D +
Sbjct: 144 VVVVNKIDVL 153
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Length = 282 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 4e-08
Identities = 19/46 (41%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 102 NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
NVGKS+++N L ++ + +T D+PG+T + + K+G +L L+D PG
Sbjct: 130 NVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPG 174
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* Length = 301 | Back alignment and structure |
|---|
Score = 51.7 bits (123), Expect = 5e-08
Identities = 33/172 (19%), Positives = 68/172 (39%), Gaps = 28/172 (16%)
Query: 95 IAFAGRSNVGKSSMLNAL-----TRQWGVVRTSDKPGLTQTINFFKLG-------TKLCL 142
+ G S +GKS+++N+L + + ++K T I + +L +
Sbjct: 21 LMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80
Query: 143 VDLPGYGFA----YAKEEVKDAWEELVKEYVSTRVSLKR---------VCLLIDTKWGVK 189
VD PGYG A + + +E + Y+ L R C + +G
Sbjct: 81 VDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHG 140
Query: 190 PRDHELISLMERSQTKYQV--VLTKTDTVFPIDVARRAMQIEESLKANNSLV 239
+ + ++ M+ K + V+ K DT+ + R +I + ++ +N +
Sbjct: 141 LKPLD-VAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKI 191
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* Length = 262 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 9e-08
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 102 NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
N GKS+++N L + +PG+T+ I +F L + ++D PG
Sbjct: 109 NTGKSTIINKLKGK-RASSVGAQPGITKGIQWFSLENGVKILDTPG 153
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 1e-07
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 95 IAFAGRSNVGKSSMLNALT-----RQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148
+ G +NVGKS+ +N + V+ TS PG T + L + L D PG
Sbjct: 163 VYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGI 221
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} Length = 161 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 6e-07
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFK---LGTKLCLVDL 145
+ ++ GR NVGKSS+ N L ++ R++ D PG+T+ + + LVD
Sbjct: 1 MHKVVIVGRPNVGKSSLFNRLLKK----RSAVVADVPGVTRDLKEGVVETDRGRFLLVDT 56
Query: 146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCL-LIDTKWGVKPRDHELISLMERSQT 204
G D WE+ ++E V + V L +D + + D+E+ + R
Sbjct: 57 GGL-------WSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGK 109
Query: 205 KYQVVLTKTD 214
+V TK D
Sbjct: 110 PVILVATKVD 119
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* Length = 272 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 7e-07
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 18/73 (24%)
Query: 95 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKLGTKLCLVDLP 146
IA G N GK+S+ N +T Q W PG+T + K L + DLP
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQRVGNW--------PGVTVERKSGLVKKNKDLEIQDLP 57
Query: 147 G-YGF-AYAKEEV 157
G Y Y+ E
Sbjct: 58 GIYSMSPYSPEAK 70
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Length = 369 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 7e-07
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWG----VVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 150
+ G +NVGKS+ +N + + V+ TS PG T + L + L D PG
Sbjct: 165 VYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIIN 224
Query: 151 AYAKEEVKDAWE 162
+ DA +
Sbjct: 225 HHQMAHFVDARD 236
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 3e-06
Identities = 30/157 (19%), Positives = 50/157 (31%), Gaps = 23/157 (14%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFA 151
+ G+ VGKSS +N+L + VVR S G + ++D PG
Sbjct: 39 VLVLGKGGVGKSSTVNSLIGE-QVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLV-- 95
Query: 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ---- 207
V EL+K ++ R LL + V D ++ +
Sbjct: 96 -EAGYVNHQALELIKGFLVNR---TIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIW 151
Query: 208 ----VVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 240
+VLT P + + E + +
Sbjct: 152 CKTLLVLTHAQFSPPDE-----LSYETFSSKRSDSLL 183
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* Length = 165 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 4e-06
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 95 IAFAGRSNVGKSSMLNALT--RQWGVVRTSDKPGLT--QTINFFKL-GTKLCLVDLPG-Y 148
IA G NVGKS++ NALT + PG+T + F+ G K +VDLPG Y
Sbjct: 6 IALIGNPNVGKSTIFNALTGENV----YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVY 61
Query: 149 GF-AYAKEEV 157
A + +E+
Sbjct: 62 SLTANSIDEI 71
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* Length = 274 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 4e-06
Identities = 33/168 (19%), Positives = 63/168 (37%), Gaps = 27/168 (16%)
Query: 98 AGRSNVGKSSMLNAL-----------TRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLP 146
G S +GKS+++N+L + +T I + L +VD P
Sbjct: 14 VGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTP 73
Query: 147 GYGFAYAKE----EVKDAWEELVKEYVSTRVSLKR---------VCLLIDTKWGVKPRDH 193
G+G A V D + ++Y++ + R CL G +
Sbjct: 74 GFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPL 133
Query: 194 ELISLMERSQTKYQV--VLTKTDTVFPIDVARRAMQIEESLKANNSLV 239
+ I M+R K + ++ K DT+ P + + QI + ++ + +
Sbjct: 134 D-IEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKI 180
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 361 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 5e-06
Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 28/172 (16%)
Query: 95 IAFAGRSNVGKSSMLNAL-----TRQWGVVRTSDKPGLTQTINFFKLG-------TKLCL 142
+ G S +GKS+++N+L + + ++K T I + +L +
Sbjct: 40 LMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTV 99
Query: 143 VDLPGYGFAYAKE----EVKDAWEELVKEYVSTRVSLKR---------VCLLIDTKWG-- 187
VD PGYG A + +E + Y+ L R C + +G
Sbjct: 100 VDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHG 159
Query: 188 VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV 239
+KP D + + ++ V+ K DT+ + R +I + ++ +N +
Sbjct: 160 LKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKI 210
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} Length = 188 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 6e-06
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 19/74 (25%)
Query: 95 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
IA G NVGKS++ NALT W PG+T + F+ G K +VDL
Sbjct: 10 IALIGNPNVGKSTIFNALTGENVYIGNW--------PGVTVEKKEGEFEYNGEKFKVVDL 61
Query: 146 PG-YGF-AYAKEEV 157
PG Y A + +E+
Sbjct: 62 PGVYSLTANSIDEI 75
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} Length = 271 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 6e-06
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 19/74 (25%)
Query: 95 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
+A G NVGK+++ NALT RQ W PG+T + + + +VDL
Sbjct: 6 VALVGNPNVGKTTIFNALTGLRQHVGNW--------PGVTVEKKEGIMEYREKEFLVVDL 57
Query: 146 PG-YGF-AYAKEEV 157
PG Y A++ +E+
Sbjct: 58 PGIYSLTAHSIDEL 71
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A Length = 258 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 9e-06
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 19/74 (25%)
Query: 95 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
+A AG NVGK+S+ NALT +Q W PG+T + F G + L+DL
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANW--------PGVTVEKKEGVFTYKGYTINLIDL 59
Query: 146 PG-YGF-AYAKEEV 157
PG Y + +E
Sbjct: 60 PGTYSLGYSSIDEK 73
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 1e-05
Identities = 36/259 (13%), Positives = 67/259 (25%), Gaps = 69/259 (26%)
Query: 17 QPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKL- 75
+ + FVE+ L R Y L +P+ S E R++L
Sbjct: 74 KQEEMVQKFVEEVL----------RINYKF-LMSPIKTEQRQPSMMTRMYIE--QRDRLY 120
Query: 76 ---EFFAAAKVSSSFPAPDL--------PE--IAFAGRSNVGKSSMLNALTRQ------- 115
+ FA VS P L P + G GK+ + +
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 116 -----WGVVRTSDKPG--LTQTINFF-KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167
W ++ + P L ++ ++ L+K
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 168 YVSTRVSLKRVCLLI-DTKWGVKPRDHELISLME-RSQTKYQVVLTK----TD------- 214
CLL+ + + + + ++ T+ TD
Sbjct: 241 KPYEN------CLLVLLNVQ-----NAKAWNAFNLSCKI---LLTTRFKQVTDFLSAATT 286
Query: 215 TVFPIDVARRAMQIEESLK 233
T +D + +E
Sbjct: 287 THISLDHHSMTLTPDEVKS 305
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* Length = 274 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 21/86 (24%)
Query: 95 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
I G N GK+++ N LT RQ W G+T + F ++ LVDL
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNW--------AGVTVERKEGQFSTTDHQVTLVDL 57
Query: 146 PG-YGF-AYAKEEVKDAWEELVKEYV 169
PG Y + + D E++ Y+
Sbjct: 58 PGTYSLTTISSQTSLD--EQIACHYI 81
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} Length = 256 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 7e-05
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 23/78 (29%)
Query: 95 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
G N GK+++ NALT Q W PG+T + F L + + DL
Sbjct: 4 ALLIGNPNCGKTTLFNALTNANQRVGNW--------PGVTVEKKTGEFLLGEHLIEITDL 55
Query: 146 PG------YGFAYAKEEV 157
PG +++E
Sbjct: 56 PGVYSLVANAEGISQDEQ 73
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 8e-05
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT 128
++ + GR NVGKSS++NA+ + V+ S+ G T
Sbjct: 171 YNEEVIQFCLIGRPNVGKSSLVNAMLGEERVI-VSNVAGTT 210
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 1e-04
Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 17/131 (12%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFK---LGTKLCLVDL 145
P +A GR NVGKS++ N + + R S D PG+T+ + L L+D
Sbjct: 3 KPVVAIVGRPNVGKSTIFNRIAGE----RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDT 58
Query: 146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCL-LIDTKWGVKPRDHELISLMERSQT 204
G + + + +++ + V + +++ + GV D E+ ++ R++
Sbjct: 59 GGI------DIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKK 112
Query: 205 KYQVVLTKTDT 215
+ + K D
Sbjct: 113 PVVLAVNKLDN 123
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 8e-05
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVD 144
D ++A GR NVGKS++ NA+ + + S PG T+ F G K VD
Sbjct: 178 TDAIKVAIVGRPNVGKSTLFNAILNKERAL-VSPIPGTTRDPVDDEVFIDGRKYVFVD 234
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 1e-04
Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 16/132 (12%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFK---LGTKLCLVDL 145
+ + GR NVGKS++ N L ++ + + D+ G+T+ G LVD
Sbjct: 1 MATVLIVGRPNVGKSTLFNKLVKK----KKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDT 56
Query: 146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCL-LIDTKWGVKPRDHELISLMERSQT 204
G + +D + +KE + + L ++D K G+ D L + +S
Sbjct: 57 CGV-----FDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTV 111
Query: 205 KYQVVLTKTDTV 216
+V K + +
Sbjct: 112 DTILVANKAENL 123
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} Length = 550 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 1e-04
Identities = 39/198 (19%), Positives = 62/198 (31%), Gaps = 49/198 (24%)
Query: 83 VSSSFPAPDL---PEIAFAGRSNVGKSSMLNALTRQ------WGVVRTSDK--------- 124
S + D P + AG+ + GK+S + L Q G T+D
Sbjct: 53 HSPALEDADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGET 112
Query: 125 ----PGLT-----------------QTINFFKLGT-------KLCLVDLPGYGFAYAKEE 156
PG +N F + ++D PG +
Sbjct: 113 EGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRV 172
Query: 157 VKDAWEELVKEYVSTRVSLKRVCLLID-TKWGVKPRDHELISLMERSQTKYQVVLTKTDT 215
+ V + + RV L + LL D K + E I + + K +VVL K D
Sbjct: 173 SRGYDFPAVLRWFAERVDL--IILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADM 230
Query: 216 VFPIDVARRAMQIEESLK 233
V + R + +L
Sbjct: 231 VETQQLMRVYGALMWALG 248
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 1e-04
Identities = 32/201 (15%), Positives = 65/201 (32%), Gaps = 30/201 (14%)
Query: 60 SSERERIEENIFRNKLEFFAAAKV---SSSFPAPDLPE--IAFAGRSNVGKSSMLNALTR 114
+S+++ + E N K+ + D+ I G+ VGKSS +N++
Sbjct: 2 ASQQQTVREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIG 61
Query: 115 QWGVVRTSDKPGLTQT---INFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171
+ VV S ++ + G L ++D PG ++ + +
Sbjct: 62 E-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGL-------IEGGYINDMALNIIKS 113
Query: 172 RVSLKRV-CLLIDTKWGVKPRDHELISLMERSQTKYQ--------VVLTKTDTVFPIDVA 222
+ K + LL + D+ + + + V LT P
Sbjct: 114 FLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP---- 169
Query: 223 RRAMQIEESLKANNSLVQPVV 243
+ +E + + VV
Sbjct: 170 -DGLPYDEFFSKRSEALLQVV 189
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 243 | |||
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.93 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.92 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.92 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.91 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.87 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.86 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.86 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.86 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.84 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.83 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.82 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.81 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.81 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.81 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.8 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.8 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.8 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.79 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.79 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.79 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.78 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.78 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.78 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.78 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.78 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.78 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.77 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.76 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.76 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.75 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.75 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.75 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.75 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.75 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.75 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.75 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.74 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.74 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.74 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.73 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.73 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.73 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.73 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.73 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.72 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.72 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.72 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.72 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.72 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.72 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.72 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.72 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.72 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.72 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.72 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.72 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.72 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.72 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.71 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.71 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.71 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.71 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.71 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.71 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.71 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.71 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.71 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.71 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.71 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.71 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.71 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.71 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.71 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.71 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.71 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.7 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.7 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.7 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.7 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.7 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.7 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.7 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.7 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.7 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.7 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.7 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.69 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.69 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.69 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.69 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.69 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.69 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.69 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.69 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.69 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.69 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.69 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.69 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.69 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.69 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.68 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.68 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.68 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.68 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.68 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.68 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.68 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.68 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.68 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.68 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.68 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.68 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.67 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.67 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.67 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.67 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.67 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.67 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.67 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.67 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.67 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.67 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.67 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.67 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.66 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.66 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.66 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.66 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.66 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.66 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.66 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.66 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.66 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.66 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.66 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.65 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.65 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.65 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.65 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.65 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.65 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.65 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.64 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.64 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.64 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.64 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.64 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.64 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.64 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.64 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.63 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.63 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.63 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.63 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.63 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.63 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.63 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.63 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.62 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.62 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.62 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.62 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.61 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.61 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.61 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.61 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.6 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.6 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.59 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.38 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.59 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.59 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.59 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.59 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.58 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.58 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.58 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.57 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.57 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.57 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.55 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.55 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.54 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.54 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.53 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.53 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.52 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.52 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.51 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.5 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.48 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.47 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.47 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.46 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.44 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.42 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.42 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.42 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.39 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.38 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 99.31 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.28 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.24 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.2 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.19 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.15 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 99.14 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 99.13 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.08 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 99.06 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.99 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.81 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.76 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 98.72 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.62 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 98.32 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.32 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 98.3 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.3 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 98.25 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.24 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 98.22 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 98.17 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.16 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.15 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 98.11 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 98.1 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.06 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.04 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.02 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.99 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 97.89 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 97.83 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.77 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.71 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 97.69 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 97.59 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.57 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.52 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 97.5 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.43 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.38 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 97.36 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 97.34 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 97.28 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.28 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.28 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.26 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.25 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 97.25 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 97.23 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 97.22 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 97.22 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 97.2 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.18 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 97.15 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 97.11 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 97.09 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 97.09 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 97.08 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 97.07 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 97.06 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 97.05 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 97.04 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 97.04 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 97.03 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 97.02 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 97.02 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.02 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 97.01 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 97.01 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 97.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 97.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 97.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 97.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 96.99 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 96.99 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 96.98 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 96.98 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 96.98 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 96.98 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 96.97 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 96.97 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 96.97 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 96.97 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 96.97 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 96.94 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 96.94 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 96.93 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.92 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.91 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 96.9 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 96.89 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.89 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 96.88 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 96.86 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.83 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 96.82 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 96.81 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 96.81 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 96.81 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 96.81 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.78 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.77 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 96.75 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.75 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 96.75 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 96.73 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 96.73 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 96.71 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 96.7 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 96.68 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 96.68 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 96.67 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 96.67 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 96.66 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 96.65 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 96.65 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 96.65 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.64 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 96.64 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 96.63 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 96.63 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 96.62 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 96.62 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 96.61 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 96.61 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 96.59 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.59 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 96.58 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 96.57 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.56 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 96.56 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 96.55 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.55 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 96.55 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 96.53 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 96.53 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 96.53 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 96.53 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 96.53 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.52 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 96.52 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 96.51 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 96.51 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.5 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 96.49 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 96.49 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.48 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 96.48 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 96.47 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.46 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.46 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.43 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 96.43 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 96.42 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 96.42 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 96.41 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 96.39 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.38 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.38 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.37 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 96.35 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.32 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.3 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.3 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.3 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 96.29 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.29 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.28 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 96.26 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 96.26 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.24 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.23 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.23 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 96.23 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.22 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.19 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 96.17 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.16 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.16 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.15 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.14 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.13 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.12 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 96.12 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 96.11 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.1 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.1 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.1 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 96.09 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.08 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 96.07 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.06 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 96.06 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.06 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 96.05 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.04 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.03 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 96.03 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.01 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.0 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.98 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.97 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 95.97 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 95.96 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 95.95 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 95.95 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 95.95 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 95.94 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 95.92 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 95.92 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.91 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 95.91 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 95.9 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.89 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 95.86 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 95.85 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 95.85 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 95.85 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 95.83 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 95.82 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 95.82 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 95.8 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.8 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.8 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 95.76 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 95.73 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 95.73 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 95.73 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 95.72 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 95.72 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 95.72 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 95.71 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 95.7 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 95.66 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 95.65 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 95.65 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 95.64 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 95.64 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 95.63 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 95.62 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 95.61 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 95.59 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 95.58 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 95.58 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.56 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 95.55 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 95.55 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 95.55 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 95.52 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 95.5 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.46 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 95.46 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.45 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 95.43 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.43 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 95.43 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 95.43 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.42 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 95.42 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 95.42 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 95.4 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 95.37 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 95.36 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 95.35 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 95.33 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 95.31 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 95.3 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 95.28 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 95.28 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 95.25 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 95.2 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.19 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 95.16 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 95.13 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 95.11 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 95.11 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.06 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 95.06 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 95.01 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 94.99 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 94.99 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 94.98 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 94.96 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 94.95 | |
| 2axn_A | 520 | 6-phosphofructo-2-kinase/fructose-2,6- biphosphata | 94.94 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 94.91 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 94.9 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 94.89 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 94.89 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 94.88 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 94.86 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 94.85 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 94.84 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 94.83 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 94.83 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 94.82 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 94.8 |
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=177.21 Aligned_cols=149 Identities=36% Similarity=0.570 Sum_probs=124.3
Q ss_pred CCCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeC----CcEEEEeCCCCCCCccchHHHHHH
Q 026112 86 SFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG----TKLCLVDLPGYGFAYAKEEVKDAW 161 (243)
Q Consensus 86 ~~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~----~~~~liDTpG~~~~~~~~~~~~~~ 161 (243)
..+....++|+++|.+|+|||||+|+|++......++..+|+|++....... ..+.+|||||+.++.........|
T Consensus 23 ~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 102 (223)
T 4dhe_A 23 DLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHW 102 (223)
T ss_dssp GSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHH
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHH
Confidence 3455567899999999999999999999984356788999999998766554 789999999998765444456677
Q ss_pred HHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhh
Q 026112 162 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (243)
Q Consensus 162 ~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~ 234 (243)
..+...|+.....+|++++|+|+++++...+..+++.+...+.|+++|+||+|+....+.......+.+.+..
T Consensus 103 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~ 175 (223)
T 4dhe_A 103 EQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDA 175 (223)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHh
Confidence 7788888888888999999999998888888889999988899999999999999888777777777776665
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.1e-24 Score=168.62 Aligned_cols=158 Identities=35% Similarity=0.575 Sum_probs=129.2
Q ss_pred CCCCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 85 ~~~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
...+....++|+++|.+|+|||||+|+|++. .....++.+++|.+......+..+.+|||||+............+..+
T Consensus 16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (195)
T 3pqc_A 16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNR-KIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRL 94 (195)
T ss_dssp TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTS-CCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred hhCCCCCCeEEEEECCCCCCHHHHHHHHHcC-ccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHH
Confidence 3445567789999999999999999999998 456778889999998888788899999999987654444445566777
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCC-CccccCC
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN-SLVQPVV 243 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~-~~~~pi~ 243 (243)
...++.....+|++++|+|++.+....+..+.+++...+.|+++|+||+|+..+.+.....+.+++.+...+ ..+++++
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTS 174 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECC
T ss_pred HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEe
Confidence 778888777789999999998877788888888888889999999999999988777777778888777643 4555654
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5e-24 Score=169.58 Aligned_cols=158 Identities=34% Similarity=0.577 Sum_probs=116.2
Q ss_pred CCCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 86 SFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 86 ~~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..+....++|+++|.+|+|||||+|+|++......+++.+++|.+...+..+..+.+|||||+.+..........+..+.
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred hCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccccCHHHHHHHHHHH
Confidence 34555778999999999999999999999843466788889999888877788999999999877654444455666777
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhh-CCCccccCC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA-NNSLVQPVV 243 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~-~~~~~~pi~ 243 (243)
..++.....+|++++|+|++.+.+..+..+++++...+.|+++|+||+|+....+.....+.+++.+.. .+..+++++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFS 175 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECC
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEE
Confidence 777777666799999999988888888778888888889999999999999887777666777776654 234555553
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.9e-25 Score=197.86 Aligned_cols=197 Identities=21% Similarity=0.149 Sum_probs=109.9
Q ss_pred hhccccCCCchhhHHHHHhhCCCCcceeeeecccccccCCCCCCCCCCChhHHHHHHHhhhhhhhhHHHhhcccCCCCCC
Q 026112 11 AQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAP 90 (243)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (243)
|.-.+++.+.+.+......| |..++...+ .+|+.+||++|+++.............+................. .
T Consensus 157 ~~~~a~~~l~G~ls~~i~~l--r~~L~~~~a-~iea~iDf~eedi~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~--r 231 (476)
T 3gee_A 157 AYRTAVSQMKGDLSVRLGGL--REQLIRSCA-LIELELDFSEEDVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIV--S 231 (476)
T ss_dssp HHHHHHHHHHTHHHHHHHHH--HTHHHHHHH-TTTTCSSCCSSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred HHHHHHHhhCCcHHHHHHHH--HHHHHHHHH-HhheecCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhHhh--c
Confidence 33346666677777777777 778888777 899999999988776554443332332322222222221111111 1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHH-HHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEE-LVK 166 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~-~~~ 166 (243)
.+++|+++|+||+|||||+|+|++. ....+++++|||++.... ..+..+.+|||||+.+.. + .++. .+.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~-~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~--~----~ve~~gi~ 304 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQ-ERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG--E----EIEHEGIR 304 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC-----------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcch--h----HHHHHHHH
Confidence 4578999999999999999999998 457789999999997433 236789999999986521 1 1111 123
Q ss_pred HHHhcccCccEEEEEEeCCCCCCh----hhHHHHHHHHhcCCcEEEEeecCCCCChHHH
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKP----RDHELISLMERSQTKYQVVLTKTDTVFPIDV 221 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~----~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~ 221 (243)
........+|++++|+|++.+.+. ....+++.+. +.|+++|+||+|+......
T Consensus 305 ~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~ 361 (476)
T 3gee_A 305 RSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA 361 (476)
T ss_dssp ---CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH
T ss_pred HHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch
Confidence 444555679999999999887665 3444444443 6899999999999876544
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=167.59 Aligned_cols=149 Identities=23% Similarity=0.298 Sum_probs=109.4
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---e-CCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---L-GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
++...|+++|.+|||||||+|+|++. ....+++.+++|++..... . +..+.+|||||+..........+.+....
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~-~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT-KVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC-CccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence 34558999999999999999999998 6677899999998764332 2 56799999999976432233333333444
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhHHH-HHHHHhcCCcEEEEeecCCCC-ChHHHHHHHHHHHHHHhhCCCccccCC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHEL-ISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEESLKANNSLVQPVV 243 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~-~~~l~~~~~p~i~v~nK~D~~-~~~~~~~~~~~l~~~l~~~~~~~~pi~ 243 (243)
..++.. +|++++|+|++.+....+..+ ++.+...+.|+++|+||+|+. ...........+.+.+.. ...++|++
T Consensus 87 ~~~l~~---aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~-~~~i~~vS 162 (308)
T 3iev_A 87 KQSLEE---ADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPE-LTEIVPIS 162 (308)
T ss_dssp HHHHHH---CSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTT-CCCEEECB
T ss_pred HHHhhc---CCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccC-CCeEEEEe
Confidence 444443 999999999998877777776 888888899999999999998 555556666666655431 23455553
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.2e-23 Score=185.80 Aligned_cols=186 Identities=23% Similarity=0.265 Sum_probs=117.5
Q ss_pred ccCCCchhhHHHHHhhCCCCcceeeeecccccccCCCCCCCCCCChhHHHHHHHhhhhhhhhHHHhhcccCCCCCCCCCE
Q 026112 15 AIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPE 94 (243)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (243)
+++...+.+......+ +..++.... .+++.+||+++ ++..... .......+................. ..+++
T Consensus 173 a~~~l~g~l~~~~~~~--r~~l~~~~~-~ie~~idf~ee-i~~~~~~-i~~~~~~l~~eL~~l~~~~~~~~~~--r~~~k 245 (482)
T 1xzp_A 173 SLRNLKGGLRDFVDSL--RRELIEVLA-EIRVELDYPDE-IETNTGE-VVTRLERIKEKLTEELKKADAGILL--NRGLR 245 (482)
T ss_dssp HHHHHTTHHHHHHHHH--HHHHHHHHH-HHHHHHHSTTT-CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HHCEE
T ss_pred HHHhcchhHhHHHHHH--HHHHHHHHH-HhhhcCCCCcc-ccchHHH-HHHHHHHHHHHHHHHHHhhhhhhhc--cCCCE
Confidence 4444444455555555 455555554 78888999987 6642211 1111111211111111111111111 13579
Q ss_pred EEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCC-CCcc---chHHHHHHHHHHHH
Q 026112 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYG-FAYA---KEEVKDAWEELVKE 167 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~-~~~~---~~~~~~~~~~~~~~ 167 (243)
|+++|+||+|||||+|+|++. ....+++++|||+++... ..+..+.+|||||+. +... ...+...+.
T Consensus 246 V~ivG~pnvGKSSLln~L~~~-~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~----- 319 (482)
T 1xzp_A 246 MVIVGKPNVGKSTLLNRLLNE-DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQ----- 319 (482)
T ss_dssp EEEECCHHHHTCHHHHHHHHH-TBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHH-----
T ss_pred EEEECcCCCcHHHHHHHHHCC-CCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHH-----
Confidence 999999999999999999998 446789999999986432 236789999999997 5321 111222222
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
++. .+|++++|+|++.+.+..+.++++.+ .+.|+++|+||+|+...
T Consensus 320 ~~~---~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~ 365 (482)
T 1xzp_A 320 EIE---KADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEK 365 (482)
T ss_dssp HHH---HCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCC
T ss_pred Hhh---cccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccc
Confidence 222 29999999999887777676666665 37899999999999753
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.4e-21 Score=163.76 Aligned_cols=122 Identities=22% Similarity=0.247 Sum_probs=94.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
..|+++|.||+|||||+|+|++. ..+.+++.++||++.... ..+..+.+|||||+.+.. ..+.+.+......+
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~-~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~--~~l~~~~~~~~~~~- 83 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGV-KVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM--DALGEFMDQEVYEA- 83 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC--SHHHHHHHHHHHHH-
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-ceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchh--hHHHHHHHHHHHHH-
Confidence 47999999999999999999998 567788889999875332 226689999999987642 22333333333333
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhc--CCcEEEEeecCCCCChHH
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~--~~p~i~v~nK~D~~~~~~ 220 (243)
...+|++++|+|+++++...+..+++.+... +.|+++|+||+|+.....
T Consensus 84 --l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~ 134 (301)
T 1wf3_A 84 --LADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPE 134 (301)
T ss_dssp --TSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHH
T ss_pred --HhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchH
Confidence 3459999999999888877777777888877 899999999999986544
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.4e-23 Score=183.99 Aligned_cols=191 Identities=21% Similarity=0.218 Sum_probs=120.0
Q ss_pred cccCCCchhhHHHHHhhCCCCcceeeeecccccccCCCCCCCCCCChhHHHHHHHhhhhhhhhHHHhhcccCCCCCCCCC
Q 026112 14 RAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLP 93 (243)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (243)
.+++.+.+.+......| +..+++..+ .+|+.+||++ +++.............+................. ..++
T Consensus 152 ~a~~~l~g~~~~~~~~~--r~~l~~~~a-~iEa~iDf~e-d~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~--r~~~ 225 (462)
T 3geh_A 152 TALAGLQGKLAHPIRQL--RANCLDILA-EIEARIDFEE-DLPPLDDEAIISDIENIAAEISQLLATKDKGELL--RTGL 225 (462)
T ss_dssp HHHHHHHTTTHHHHHHH--HHHHHHHHH-HHHHHTTSSS-SSCCCCTTTHHHHHHHHHHHHHHHTTTHHHHHHH--HHCE
T ss_pred HHHHHhchhHHHHHHHH--HHHHHHHHH-HHHhhccccc-cCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhh--cCCC
Confidence 35666667777777777 777777776 7999999988 5554443332222222221111111111111101 1357
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE---EEEeCCcEEEEeCCCCCCCccchHHHHHHHH-HHHHHH
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE-LVKEYV 169 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~-~~~~~~ 169 (243)
+|+++|+||+|||||+|+|++. ....+++.+|||++.. ....+..+.+|||||+.+.. + .++. .+.+..
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~-~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~--~----~ve~~gi~~~~ 298 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQS-DRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETS--D----QVEKIGVERSR 298 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH-HBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------------
T ss_pred EEEEEcCCCCCHHHHHHHHhCC-CcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccch--h----HHHHHHHHHHh
Confidence 8999999999999999999998 4467899999998863 33347789999999986531 1 1111 133445
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChH
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~ 219 (243)
.....+|++++|+|++.+....+..+++.+.. .|+++|+||+|+....
T Consensus 299 ~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~piivV~NK~Dl~~~~ 346 (462)
T 3geh_A 299 QAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILVMNKIDLVEKQ 346 (462)
T ss_dssp CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SCEEEEEECTTSSCGG
T ss_pred hhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--CcEEEEEECCCCCcch
Confidence 55667999999999998888777777776654 7999999999997643
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=165.23 Aligned_cols=196 Identities=18% Similarity=0.133 Sum_probs=100.0
Q ss_pred hhccccCCCchhhHHHHHhhCCCCcceeeeecccccccCCCCCCCCCCChhHHHHHHHhhhh--hhhhHHHhh--cccCC
Q 026112 11 AQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFR--NKLEFFAAA--KVSSS 86 (243)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~ 86 (243)
++.+++|++.+++.+..+|+ +.|..+....+++. ..++++. ..+..+..+..++.. ..+...... ..+..
T Consensus 100 t~~~~~q~~la~l~~~~~rl-~~~~~l~~~~~~i~--~~g~ge~---~~e~~~~~~~~~i~~l~~~l~~~~~~r~~~r~~ 173 (364)
T 2qtf_A 100 SKEAKMQIELARLKYELPII-KETYTKSKIGEQQG--PLGAGTY---GVESTIKFYKRRINKLMKELESIKIFKEKSIES 173 (364)
T ss_dssp SHHHHHHHHHHHHHHHHHHH-HHC--------------------------CHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred ccchhHHHHHHHHhhhchhh-hhhhHHHHhcCCCC--cCCcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44457899999999999999 66755444432221 2223332 222234444554432 222222211 12222
Q ss_pred CCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHH
Q 026112 87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (243)
Q Consensus 87 ~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~ 163 (243)
+.+.+.+.|+++|++|||||||+|+|++.. ..+++.+++|++..... .+..+.++||||+......+.++ .+.
T Consensus 174 r~~~~~~~V~lvG~~naGKSTLln~L~~~~--~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve-~f~- 249 (364)
T 2qtf_A 174 NKRNNIPSIGIVGYTNSGKTSLFNSLTGLT--QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVD-AFF- 249 (364)
T ss_dssp -----CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHH-HHH-
T ss_pred hhhcCCcEEEEECCCCCCHHHHHHHHHCCC--ccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHH-HHH-
Confidence 333456679999999999999999999984 46778889888764332 25678999999975422222121 122
Q ss_pred HHHHHHhcccCccEEEEEEeCCCCC--Chhh-HHHHHHHHh---cCCcEEEEeecCCCCChH
Q 026112 164 LVKEYVSTRVSLKRVCLLIDTKWGV--KPRD-HELISLMER---SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 164 ~~~~~~~~~~~~d~v~~vvd~~~~~--~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~~ 219 (243)
..+.....+|++++|+|++++. .... ..+.+.+.. .+.|+++|+||+|+....
T Consensus 250 ---~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~ 308 (364)
T 2qtf_A 250 ---VTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGD 308 (364)
T ss_dssp ---HHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC
T ss_pred ---HHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCch
Confidence 2233345599999999987653 1111 123333433 468999999999998643
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-19 Score=152.23 Aligned_cols=149 Identities=19% Similarity=0.287 Sum_probs=99.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccC-------CCCceEEEEEEEe---C--CcEEEEeCCCCCCCccch-HHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFKL---G--TKLCLVDLPGYGFAYAKE-EVK 158 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~-------~~gtT~~~~~~~~---~--~~~~liDTpG~~~~~~~~-~~~ 158 (243)
.++|+++|.+|+|||||+|+|++.. ...... .++++.+...... + ..+.+|||||+++..... ...
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~-~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTD-LYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSC-C---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 4799999999999999999999873 222221 2223333322221 2 279999999997653221 111
Q ss_pred HH---HHHHHHHHHhc----------ccCccEEEEEEeC-CCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHH
Q 026112 159 DA---WEELVKEYVST----------RVSLKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARR 224 (243)
Q Consensus 159 ~~---~~~~~~~~~~~----------~~~~d~v~~vvd~-~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~ 224 (243)
.. +......|+.. ...+|+++++++. .+++...+..+++.+.. ++|+++|+||+|+..+.+....
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~ 165 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQF 165 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHHHH
Confidence 11 11222333332 1126788888864 45788888888888887 8999999999999998888888
Q ss_pred HHHHHHHHhhCCCccccC
Q 026112 225 AMQIEESLKANNSLVQPV 242 (243)
Q Consensus 225 ~~~l~~~l~~~~~~~~pi 242 (243)
...+.+.+..++..++++
T Consensus 166 ~~~i~~~l~~~~i~v~~~ 183 (274)
T 3t5d_A 166 KKQIMKEIQEHKIKIYEF 183 (274)
T ss_dssp HHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHcCCeEEcC
Confidence 888888888888777765
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.8e-21 Score=158.09 Aligned_cols=143 Identities=22% Similarity=0.198 Sum_probs=97.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
++|+++|.+|||||||+|+|++.. ..+++.+|+|.+..... .+..+.+|||||+.............+.+...|+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~--~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN--QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS--EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 689999999999999999999984 67888999998765433 3567999999998653321000011123344444
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi~ 243 (243)
.. ..+|++++|+|++.. .....+..++...+.|+++|+||+|+............+.+.+ +.+++|++
T Consensus 80 ~~-~~~d~vi~VvDas~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l---g~~vi~~S 147 (256)
T 3iby_A 80 ID-LEYDCIINVIDACHL--ERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLL---GCSVIPIQ 147 (256)
T ss_dssp HH-SCCSEEEEEEEGGGH--HHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHH---CSCEEECB
T ss_pred hh-CCCCEEEEEeeCCCc--hhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHc---CCCEEEEE
Confidence 22 349999999998862 5556777778888999999999999875443322333444444 34555553
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-19 Score=143.13 Aligned_cols=156 Identities=39% Similarity=0.555 Sum_probs=99.9
Q ss_pred CCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 87 ~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
++...+.+|+++|++|||||||+|+|++......+++.+|+|.....+..+..+.++||||+............|...+.
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 34456789999999999999999999997434566778888876655444458999999998642211111233444455
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCC--CccccC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN--SLVQPV 242 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~--~~~~pi 242 (243)
.++.....++.+++++|...+....+..+..++...+.|+++|.||+|+....+.......++..+.... ...+|+
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETF 178 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEEC
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEE
Confidence 5555455689999999998776666666777777788999999999999987655554556666665543 233454
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=8.8e-20 Score=163.39 Aligned_cols=120 Identities=23% Similarity=0.330 Sum_probs=81.3
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
|+|+++|.||+|||||+|+|++. +.+.+++.+|+|++..... .+..+.+|||||+.... .+.....+......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~-~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~-~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKK-KKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP-QDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSG-GGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CCceecCCCCCccceeeEEEEECCeEEEEEECCCccccc-cchHHHHHHHHHHHHH
Confidence 68999999999999999999998 5567899999999864432 36689999999986421 1111122223333444
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
. .+|++++|+|+..+++..+..+.+++...++|+++|+||+|+..
T Consensus 80 ~---~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~ 124 (439)
T 1mky_A 80 R---EADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLR 124 (439)
T ss_dssp T---TCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHH
T ss_pred H---hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcc
Confidence 3 39999999999988888888888888888999999999999853
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-19 Score=162.10 Aligned_cols=121 Identities=20% Similarity=0.331 Sum_probs=79.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.||+|||||+|+|++. +.+.+++.+|+|++...... +..+.+|||||+..... .....+......+
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~-~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~--~~~~~~~~~~~~~ 79 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGE-RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE--PFLAQIRQQAEIA 79 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEE-ECC-----------CEEEECTTCSSCCEEEC-----------CHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcch--hHHHHHHHHHHHH
Confidence 379999999999999999999998 55778999999999876653 67899999999863211 1222333333344
Q ss_pred HhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
+.. +|++++|+|+..+.+..+..+.+.+...++|+++|+||+|+...
T Consensus 80 ~~~---ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 80 MDE---ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp HHH---CSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC---
T ss_pred HHh---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccc
Confidence 443 99999999999888888888888888889999999999998753
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-20 Score=156.19 Aligned_cols=122 Identities=20% Similarity=0.165 Sum_probs=87.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|||||||+|+|++.. ..+++.+|+|.+..... .+..+.+|||||+.+...........+.+...|
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~--~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR--QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC--EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC--cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 3689999999999999999999984 67889999998865433 367899999999865321100000011222333
Q ss_pred HhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
+. ...+|++++|+|++.. .....+...+...++|+++|+||+|+...
T Consensus 81 ~~-~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~ 127 (274)
T 3i8s_A 81 IL-SGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEK 127 (274)
T ss_dssp HH-HTCCSEEEEEEEGGGH--HHHHHHHHHHHHHTCCEEEEEECHHHHHH
T ss_pred Hh-hcCCCEEEEEecCCCh--HHHHHHHHHHHhcCCCEEEEEECccchhh
Confidence 32 2349999999998862 45566777777889999999999998644
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-19 Score=161.41 Aligned_cols=122 Identities=20% Similarity=0.348 Sum_probs=82.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|||||||+|+|++. +.+.+.+.+|+|++...... +..+.+|||||+... .+.....+......
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~-~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~--~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGE-RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIG--DEPFLAQIRQQAEI 98 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEE-EEC-----------CEEEECTTCSSCCEEECCCC--------CCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC-CCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCc--chHHHHHHHHHHHh
Confidence 4689999999999999999999998 55778999999999877653 678999999998642 22223333344444
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
++.. +|++++|+|+..++...+..+.+++...++|+++|+||+|+...
T Consensus 99 ~~~~---ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 99 AMDE---ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp HHHH---CSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-----
T ss_pred hHhh---CCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhh
Confidence 4444 89999999999889999999999999889999999999998743
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-19 Score=162.49 Aligned_cols=149 Identities=19% Similarity=0.245 Sum_probs=96.4
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE---EEEeCCcEEEEeCCCCCCCccc-hHHHHHHHHH-
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAK-EEVKDAWEEL- 164 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~---~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~~~- 164 (243)
...++|+++|.+|+|||||+|+|++. ....+++++|||++.. +...+..+.+|||||+...... +.++ .+..+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~-~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e-~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGE-ERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTE-KYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTS-TTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCS-HHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCC-CceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHH-HHHHHH
Confidence 35689999999999999999999998 4466899999999863 2334668999999998543211 1111 11111
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHH--HHHHHHHHHHHHhhC-CCcccc
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--VARRAMQIEESLKAN-NSLVQP 241 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~--~~~~~~~l~~~l~~~-~~~~~p 241 (243)
...++. .+|++++|+|++++.+.++..++..+...+.|+++|+||+|+.+... ..+..+.+.+.+... +.++++
T Consensus 251 ~~~~~~---~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (436)
T 2hjg_A 251 ALKAID---RSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 327 (436)
T ss_dssp HHHHHH---HCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHHH---hCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 112222 28999999999998888888888888888999999999999986533 234445555555432 334455
Q ss_pred CC
Q 026112 242 VV 243 (243)
Q Consensus 242 i~ 243 (243)
+|
T Consensus 328 ~S 329 (436)
T 2hjg_A 328 MS 329 (436)
T ss_dssp CC
T ss_pred Ee
Confidence 53
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.8e-19 Score=145.45 Aligned_cols=128 Identities=18% Similarity=0.216 Sum_probs=78.2
Q ss_pred CCCCCEEEEecCCCCchhHHHHHHhcccccccccCCC--CceEEEEEEE---eCCcEEEEeCCCCCCCccc-hHHHHHHH
Q 026112 89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP--GLTQTINFFK---LGTKLCLVDLPGYGFAYAK-EEVKDAWE 162 (243)
Q Consensus 89 ~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~--gtT~~~~~~~---~~~~~~liDTpG~~~~~~~-~~~~~~~~ 162 (243)
....++|+++|.+|+|||||+|+|++.. ...+..+ ++|.++.... .+..+.+|||||+.+.... .+.. .
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~--~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~---~ 100 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRK--VFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETS---K 100 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSC--CSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHH---H
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCC--cCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHH---H
Confidence 3456899999999999999999999984 2344444 5666654332 3668999999998764322 2222 2
Q ss_pred HHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHH-----hcCCcEEEEeecCCCCChHHHH
Q 026112 163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME-----RSQTKYQVVLTKTDTVFPIDVA 222 (243)
Q Consensus 163 ~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~-----~~~~p~i~v~nK~D~~~~~~~~ 222 (243)
.+...+......+|++++|+|+.. +...+..++..+. ....|+++|+||+|+.....+.
T Consensus 101 ~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~ 164 (239)
T 3lxx_A 101 EIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLH 164 (239)
T ss_dssp HHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------
T ss_pred HHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHH
Confidence 233333333455899999999874 4445555555553 2356999999999998765544
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=142.51 Aligned_cols=148 Identities=16% Similarity=0.123 Sum_probs=90.1
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
...++|+++|.+|+|||||+|+|++.. ..+++.+++|+++.... .+..+.+|||||+.+....+.....+. .+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~-~~~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRAN--VDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMT-TIT 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTC--EEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHH-HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC--CccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHH-HHH
Confidence 457899999999999999999999983 33677888888876544 256799999999865321111000011 122
Q ss_pred HHHhcccCccEEEEEEeCCCCCCh---hhHHHHHHHHhc--CCcEEEEeecCCCCChHHHHHH-HHHHHHHHhhCC--Cc
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKP---RDHELISLMERS--QTKYQVVLTKTDTVFPIDVARR-AMQIEESLKANN--SL 238 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~---~~~~~~~~l~~~--~~p~i~v~nK~D~~~~~~~~~~-~~~l~~~l~~~~--~~ 238 (243)
.+. ..+|++++|+|++...+. ....++..+... +.|+++|+||+|+....+.... ...+.+.....+ ..
T Consensus 104 ~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (228)
T 2qu8_A 104 ALA---HINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIK 180 (228)
T ss_dssp HHH---TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEE
T ss_pred Hhh---ccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCce
Confidence 222 237999999998875432 234566666654 7999999999999865433221 223334444443 44
Q ss_pred cccCC
Q 026112 239 VQPVV 243 (243)
Q Consensus 239 ~~pi~ 243 (243)
+++++
T Consensus 181 ~~~~S 185 (228)
T 2qu8_A 181 FSSFS 185 (228)
T ss_dssp EEECC
T ss_pred EEEEe
Confidence 55553
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.3e-19 Score=134.65 Aligned_cols=119 Identities=24% Similarity=0.274 Sum_probs=81.2
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
++|+++|.+|+|||||+|+|++. ....+...+++|.+..... .+..+.+|||||...... ....+......++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~ 77 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK-RSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK---WEKKIQEKVDRAL 77 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC-CC-----------CCEEEEEEETTEEEEEEECGGGCSSSS---CCHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccc---hHHHHHHHHHHHH
Confidence 68999999999999999999998 4455677788887764433 356899999999865321 1111122222333
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
..+|++++|+|++.+....+..+.+++...+.|+++|+||+|+...
T Consensus 78 ---~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 78 ---EDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKH 123 (161)
T ss_dssp ---TTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGG
T ss_pred ---HhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccc
Confidence 3489999999998877777777888888788999999999999865
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=136.70 Aligned_cols=119 Identities=26% Similarity=0.263 Sum_probs=82.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE--E-eCCcEEEEeCCCCCCCccchHHHHH-HHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--K-LGTKLCLVDLPGYGFAYAKEEVKDA-WEELVK 166 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~--~-~~~~~~liDTpG~~~~~~~~~~~~~-~~~~~~ 166 (243)
.+.+|+++|.+|+|||||+|+|++. ....+++++++|++.... . .+..+.+|||||+..... ..+.. .....
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~~~- 78 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR-EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASD--EVERIGIERAW- 78 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSS--HHHHHHHHHHH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC-CcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchh--HHHHHHHHHHH-
Confidence 3579999999999999999999987 335578888988775322 2 255789999999865321 11110 11111
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhc---CCcEEEEeecCCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS---QTKYQVVLTKTDTV 216 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~---~~p~i~v~nK~D~~ 216 (243)
.++ ..+|++++|+|++...+.....++..+... ++|+++|+||+|+.
T Consensus 79 ~~~---~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 79 QEI---EQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp HHH---HTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred HHH---HhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 122 348999999999876555555565555443 58999999999984
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.78 E-value=8.7e-19 Score=149.54 Aligned_cols=126 Identities=25% Similarity=0.265 Sum_probs=91.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE--E-eCCcEEEEeCCCCC-CCccchHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--K-LGTKLCLVDLPGYG-FAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~--~-~~~~~~liDTpG~~-~~~~~~~~~~~~~~~~~~ 167 (243)
...|+++|++|||||||+|+|++. ....+++.+++|++.... . .+..+.++||||+. .. ..... ..+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~-~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~--~~~l~---~~~~~~ 81 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ-KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE--KRAIN---RLMNKA 81 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC-SEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH--HHHHH---HHHTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC-CccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccc--hhhHH---HHHHHH
Confidence 358999999999999999999998 556778888988764332 2 25679999999985 21 00000 111112
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC-hHHHHHH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF-PIDVARR 224 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~-~~~~~~~ 224 (243)
.......+|++++|+|+.. +...+..+.+.+...+.|+++|+||+|+.. .......
T Consensus 82 ~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~ 138 (301)
T 1ega_A 82 ASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPH 138 (301)
T ss_dssp TTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHH
T ss_pred HHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHH
Confidence 2334456899999999987 777887788888777899999999999987 4434333
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.4e-18 Score=134.84 Aligned_cols=136 Identities=26% Similarity=0.448 Sum_probs=92.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccc-hHHHHHHHHHHHHHHhc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK-EEVKDAWEELVKEYVST 171 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~~~~~~~~~~ 171 (243)
++|+++|.+|+|||||+|+|++.. ...+..+++|.+......+ .+.+|||||+...... ....+.+......|+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWK-NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIED 78 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC--CSSSSSTTCTTSCEEEEET-TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC--CccCCCCCccceeEEEecC-CEEEEECCCccccccCCHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999983 4566777888777665555 7999999997543211 11133444555556655
Q ss_pred -ccCccEEEEEEeCCCC-----------CChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHh
Q 026112 172 -RVSLKRVCLLIDTKWG-----------VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 233 (243)
Q Consensus 172 -~~~~d~v~~vvd~~~~-----------~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~ 233 (243)
...++++++|+|.... ....+.++...+...+.|+++|+||+|+.... ......+.+.++
T Consensus 79 ~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~ 150 (190)
T 2cxx_A 79 NAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV--QEVINFLAEKFE 150 (190)
T ss_dssp HGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH--HHHHHHHHHHHT
T ss_pred hhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH--HHHHHHHHHHhh
Confidence 5668899999997531 11122334555566689999999999998754 333344444444
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=6.9e-19 Score=158.32 Aligned_cols=150 Identities=19% Similarity=0.242 Sum_probs=99.9
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE---EEEEeCCcEEEEeCCCCCCCccchHHHHHHHHH-H
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL-V 165 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~-~ 165 (243)
...++|+++|.+|+|||||+|+|++. ....+++++|+|++. .+...+..+.+|||||+..........+.+... .
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGE-ERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTS-TTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCC-CccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 45789999999999999999999988 447789999999985 333346789999999986532111000111111 1
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChH--HHHHHHHHHHHHHhhC-CCccccC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI--DVARRAMQIEESLKAN-NSLVQPV 242 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~--~~~~~~~~l~~~l~~~-~~~~~pi 242 (243)
..++. .+|++++|+|++.++...+..++..+...+.|+++|+||+|+.... ...+..+.+++.+... +.+++++
T Consensus 272 ~~~~~---~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (456)
T 4dcu_A 272 LKAID---RSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 348 (456)
T ss_dssp HHHHH---HCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHHh---hCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 11222 3899999999999999999999999988899999999999998543 2344445555554432 2344454
Q ss_pred C
Q 026112 243 V 243 (243)
Q Consensus 243 ~ 243 (243)
|
T Consensus 349 S 349 (456)
T 4dcu_A 349 S 349 (456)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7.6e-19 Score=146.75 Aligned_cols=118 Identities=25% Similarity=0.284 Sum_probs=86.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|+|||||+|+|++.. ..++..+|+|.+...... +..+.+|||||+........ . +.+...|
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~--~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~---e~v~~~~ 78 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK--QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSI-D---EKIARDY 78 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC--EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSH-H---HHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCH-H---HHHHHHH
Confidence 4689999999999999999999974 457888999988654432 56899999999764322110 0 1233334
Q ss_pred HhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
+.. ..+|++++|+|++.. .....+...+...+.|+++|+||+|+...
T Consensus 79 ~~~-~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~ 125 (258)
T 3a1s_A 79 LLK-GDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAKK 125 (258)
T ss_dssp HHH-SCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHH
T ss_pred Hhh-cCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCCc
Confidence 322 348999999998863 44456667777779999999999998543
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7e-19 Score=148.04 Aligned_cols=117 Identities=21% Similarity=0.267 Sum_probs=86.3
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe--CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.++|+++|.+|||||||+|+|++.. ..+++++|+|.+...... +..+.+|||||......... .+.+...|+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~--~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~~----~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN--QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSP----EAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC--CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSSH----HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCCh----HHHHHHHHH
Confidence 4689999999999999999999973 568889999987655443 56899999999764321110 122334444
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
.. ..+|++++|+|++.. .....+...+...+.|+++|+||+|+..
T Consensus 77 ~~-~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 77 LS-QRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLD 121 (272)
T ss_dssp HT-TCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHH
T ss_pred hc-CCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCC
Confidence 43 359999999998753 3344566666677999999999999854
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-18 Score=146.88 Aligned_cols=126 Identities=22% Similarity=0.300 Sum_probs=81.6
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccccc-----ccccCCCC---ceEEE------------------------------
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV-----VRTSDKPG---LTQTI------------------------------ 131 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~-----~~vs~~~g---tT~~~------------------------------ 131 (243)
...|+|+++|.+|+|||||+|+|++. .. ..++..|+ ++++.
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~-~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR-DFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS-CCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC-CcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 45789999999999999999999998 33 23344442 22210
Q ss_pred -----------------------E-EEEeCCcEEEEeCCCCCCCcc---chHHHHHHHHHHHHHHhcccCccEEEEEEeC
Q 026112 132 -----------------------N-FFKLGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 184 (243)
Q Consensus 132 -----------------------~-~~~~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~ 184 (243)
. ....+..+.+|||||+..... .......+......++.. +|++++|+|+
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~iilvvd~ 177 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKK---QNAIIVAVTP 177 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHS---TTEEEEEEEE
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcC---CCeEEEEEEe
Confidence 0 111246799999999864211 112233344455555554 8999999996
Q ss_pred -CCCCChhh-HHHHHHHHhcCCcEEEEeecCCCCChH
Q 026112 185 -KWGVKPRD-HELISLMERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 185 -~~~~~~~~-~~~~~~l~~~~~p~i~v~nK~D~~~~~ 219 (243)
..++...+ ..+++.+...+.|+++|+||+|+....
T Consensus 178 ~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~ 214 (315)
T 1jwy_B 178 ANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKG 214 (315)
T ss_dssp SSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSS
T ss_pred cCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcc
Confidence 54554444 477888877889999999999998654
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=9.4e-18 Score=142.25 Aligned_cols=126 Identities=20% Similarity=0.262 Sum_probs=87.1
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccc-----cccCCCC----------------------ceEE------------
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV-----RTSDKPG----------------------LTQT------------ 130 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~-----~vs~~~g----------------------tT~~------------ 130 (243)
...|+|+++|.+|+|||||+|+|++.. .. .++..|+ +|++
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~-~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRD-FLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSC-CSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCC-cCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999983 22 3444454 3322
Q ss_pred --------------EEEEE-eCCcEEEEeCCCCCCCcc---chHHHHHHHHHHHHHHhcccCccE-EEEEEeCCCCCChh
Q 026112 131 --------------INFFK-LGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKR-VCLLIDTKWGVKPR 191 (243)
Q Consensus 131 --------------~~~~~-~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~-v~~vvd~~~~~~~~ 191 (243)
+.... .+..+.+|||||+..... .+.+...+..+...|+.. ++. +++|+|++.++...
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~il~v~d~~~~~~~~ 179 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK---ENCLILAVSPANSDLANS 179 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTS---TTEEEEEEEESSSCGGGC
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcC---CCeEEEEEecCCcchhhh
Confidence 00011 136899999999875321 233344556666677664 554 45799998776666
Q ss_pred hH-HHHHHHHhcCCcEEEEeecCCCCChH
Q 026112 192 DH-ELISLMERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 192 ~~-~~~~~l~~~~~p~i~v~nK~D~~~~~ 219 (243)
+. .+++.+...+.|+++|+||+|+....
T Consensus 180 ~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~ 208 (299)
T 2aka_B 180 DALKIAKEVDPQGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp HHHHHHHHHCTTCSSEEEEEECGGGSCTT
T ss_pred HHHHHHHHhCCCCCeEEEEEEccccCCCC
Confidence 53 57777777789999999999998653
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=149.09 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=91.1
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccccc-----------------------------ccccCCCCceEEEEEEE---eC
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTINFFK---LG 137 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~-----------------------------~~vs~~~gtT~~~~~~~---~~ 137 (243)
....+|+++|.+|+|||||+|+|+..... ......+|+|.+..... .+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 45679999999999999999999664210 00112367888875543 36
Q ss_pred CcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCC-------hhhHHHHHHHHhcCCc-EEEE
Q 026112 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-------PRDHELISLMERSQTK-YQVV 209 (243)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~-------~~~~~~~~~l~~~~~p-~i~v 209 (243)
..+.+|||||+.+ +..........+|++++|+|+..+.. .+..+.+..+...++| +++|
T Consensus 95 ~~~~iiDTPGh~~-------------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvv 161 (439)
T 3j2k_7 95 KHFTILDAPGHKS-------------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVL 161 (439)
T ss_pred eEEEEEECCChHH-------------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEE
Confidence 7899999999742 22222233344999999999988754 4666777777888888 9999
Q ss_pred eecCCCCCh----HHHHHHHHHHHHHHhhC
Q 026112 210 LTKTDTVFP----IDVARRAMQIEESLKAN 235 (243)
Q Consensus 210 ~nK~D~~~~----~~~~~~~~~l~~~l~~~ 235 (243)
+||+|+... .......+.+.+.+...
T Consensus 162 iNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~ 191 (439)
T 3j2k_7 162 INKMDDPTVNWSNERYEECKEKLVPFLKKV 191 (439)
T ss_pred eecCCCcccchHHHHHHHHHHHHHHHHHHh
Confidence 999999642 22344444555554443
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-18 Score=145.61 Aligned_cols=139 Identities=22% Similarity=0.236 Sum_probs=92.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|||||||+|+|++.. ..++..+|+|.+..... .+..+.+|||||+......... ......|
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----~~~~~~~ 76 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR--QHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSID----ELIARNF 76 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC--EEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHH----HHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC--cccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHH----HHHHHHh
Confidence 4689999999999999999999984 47788899988865433 3567999999997653221111 1123333
Q ss_pred HhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcC-CcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~-~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
+. ...+|++++|+|++.. .....+...+...+ .|+++|+||+|+............+.+.+ +.+++|+
T Consensus 77 ~~-~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l---g~~~~~~ 145 (271)
T 3k53_A 77 IL-DGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKEL---GVPVIPT 145 (271)
T ss_dssp HH-TTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHH---SSCEEEC
T ss_pred hh-ccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHc---CCcEEEE
Confidence 32 2459999999998864 34445555566667 99999999999764332222233344443 3445554
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.75 E-value=8.2e-18 Score=140.15 Aligned_cols=125 Identities=16% Similarity=0.137 Sum_probs=84.1
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCC-ceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~g-tT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
...++|+|+|.+|||||||+|+|++. .....+..+. +|++.... ..+..+.+|||||+.+..... .+....+.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~--~~~~~~i~ 96 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRK-QAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHC--EALYKEVQ 96 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTS-CCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCC--HHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCH--HHHHHHHH
Confidence 35679999999999999999999987 3333343343 56655432 236789999999987643221 11112222
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhc-----CCcEEEEee-cCCCCCh
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLT-KTDTVFP 218 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~-----~~p~i~v~n-K~D~~~~ 218 (243)
.........+|++++|+|+.. +...+..+.+.+... ..|.++|+| |+|+...
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence 222223345999999999885 666666676777654 578888888 9999853
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=140.40 Aligned_cols=124 Identities=21% Similarity=0.200 Sum_probs=86.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++. ....+++.+++|.+.... ..+..+.+|||||+.+...... ..+ ..+..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~--~~~-~~i~~ 113 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGE-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIND--MAL-NIIKS 113 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECH--HHH-HHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchH--HHH-HHHHH
Confidence 3579999999999999999999998 445677788887665433 2366899999999866422111 111 12223
Q ss_pred HHhcccCccEEEEEEeCCC-CCChhhHHHHHHHHhc-C----CcEEEEeecCCCCChH
Q 026112 168 YVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS-Q----TKYQVVLTKTDTVFPI 219 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~-~~~~~~~~~~~~l~~~-~----~p~i~v~nK~D~~~~~ 219 (243)
++. ...+|++++|+|.+. .+...+..+++.+... + .|+++|+||+|+.++.
T Consensus 114 ~~~-~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 114 FLL-DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HTT-TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred Hhh-cCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 322 235899999988654 4556666777777543 2 6999999999998654
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=142.53 Aligned_cols=142 Identities=18% Similarity=0.146 Sum_probs=93.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe----CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.++|+++|.+|+|||||+|++++. ....++..+++|.+...... +..+.+|||||.... ...........
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~-~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~~~~~~~ 76 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN-YSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF-----MENYFTKQKDH 76 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC-CCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH-----HHHHHTTTHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC-CCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH-----hhhhhhhHHHH
Confidence 468999999999999999999987 33566777888887765432 457899999996320 01111122333
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhH-HHHHHHHhc-----CCcEEEEeecCCCCChHHHH----HHHHHHHHHHhhCC-
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMERS-----QTKYQVVLTKTDTVFPIDVA----RRAMQIEESLKANN- 236 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~-~~~~~l~~~-----~~p~i~v~nK~D~~~~~~~~----~~~~~l~~~l~~~~- 236 (243)
++. .+|++++|+|++...+..+. .+.+++... +.|+++|+||+|+..+.... .....+++.....+
T Consensus 77 ~~~---~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~ 153 (307)
T 3r7w_A 77 IFQ---MVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGF 153 (307)
T ss_dssp HHT---TCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred Hhc---cCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCC
Confidence 333 38999999999876443433 333333322 78999999999999854443 33355556656554
Q ss_pred --CccccC
Q 026112 237 --SLVQPV 242 (243)
Q Consensus 237 --~~~~pi 242 (243)
..++++
T Consensus 154 ~~~~~~~t 161 (307)
T 3r7w_A 154 PNLIGFPT 161 (307)
T ss_dssp CSCEEEEC
T ss_pred CCeEEEEe
Confidence 455554
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=7.3e-19 Score=137.30 Aligned_cols=114 Identities=22% Similarity=0.293 Sum_probs=82.9
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE---EEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
...++|+++|.+|+|||||+|+|++.. ......+++|.+.. ....+..+.+|||||...... +.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~- 72 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK--VTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTT----------MR- 72 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC--SSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSC----------SC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc--cccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHH----------HH-
Confidence 356899999999999999999999873 23344445544432 222366789999999754211 11
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
......+|++++|+|++.+......+.+..+...+.|+++|+||+|+...
T Consensus 73 --~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 73 --ARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEA 122 (178)
T ss_dssp --CSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCS
T ss_pred --HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcC
Confidence 12234589999999988776677777777777778999999999999864
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=9.6e-18 Score=150.15 Aligned_cols=139 Identities=27% Similarity=0.341 Sum_probs=90.0
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE---EEeCCcEEEEeCCCCCCCccc--hHHHHHHH-H
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAK--EEVKDAWE-E 163 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~---~~~~~~~~liDTpG~~~~~~~--~~~~~~~~-~ 163 (243)
...++|+++|++|||||||+|+|++. ....+++++|+|++... ...|..+.+|||||+...... +..+ .+. .
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~-~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e-~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNK-ERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVE-KYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTS-TTEEECCCC------CCEEEEETTEEEEESSCSCC-----------C-CSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCC-cccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHH-HHHHH
Confidence 34689999999999999999999998 44678999999998632 233667999999998532110 0000 000 0
Q ss_pred HHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHH--HHHHHHHHHHHHh
Q 026112 164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--VARRAMQIEESLK 233 (243)
Q Consensus 164 ~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~--~~~~~~~l~~~l~ 233 (243)
....++. .+|++++|+|+..+.+..+..+...+...+.|+++|+||+|+..... ..+....+.+.+.
T Consensus 256 ~~~~~i~---~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 324 (439)
T 1mky_A 256 RVVDSIE---KADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLY 324 (439)
T ss_dssp HHHHHHH---HCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCG
T ss_pred HHHHHHh---hCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhc
Confidence 0011222 28999999999888777777788888888999999999999986543 2333334444443
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.4e-18 Score=152.12 Aligned_cols=140 Identities=25% Similarity=0.364 Sum_probs=97.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccc-----cccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-----VVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWE 162 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~-----~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~ 162 (243)
..++|+++|.+|+|||||+|+|++... .......+|+|.+..+. ..+..+.+|||||+.
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~------------- 84 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA------------- 84 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH-------------
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH-------------
Confidence 357999999999999999999998731 12234456777775332 235689999999962
Q ss_pred HHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhC----CCc
Q 026112 163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN----NSL 238 (243)
Q Consensus 163 ~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~----~~~ 238 (243)
.+..........+|++++|+|++.+...+..+.+..+...++|+++|+||+|+.++.......+.+++.+... ..+
T Consensus 85 ~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ 164 (482)
T 1wb1_A 85 DLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSS 164 (482)
T ss_dssp HHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCC
T ss_pred HHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccce
Confidence 2333334444569999999999988888888888888888999999999999998766666777777777655 345
Q ss_pred cccCC
Q 026112 239 VQPVV 243 (243)
Q Consensus 239 ~~pi~ 243 (243)
++|+|
T Consensus 165 ii~vS 169 (482)
T 1wb1_A 165 IIPIS 169 (482)
T ss_dssp EEECC
T ss_pred EEEEE
Confidence 55654
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-18 Score=133.48 Aligned_cols=116 Identities=30% Similarity=0.332 Sum_probs=76.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EE-eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FK-LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
++|+++|++|+|||||+|+|++.. ..++..+++|.+... .. .+..+.+|||||+........ .+.+...|+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~----~~~~~~~~~ 77 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI----DEIIARDYI 77 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS--SSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSH----HHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--eeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcch----hHHHHHHHH
Confidence 689999999999999999999873 345667777765432 22 356799999999764321110 112333333
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
.. ..+|++++|+|++.. .....++..+...+.|+++|+||+|+..
T Consensus 78 ~~-~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 78 IN-EKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAK 122 (165)
T ss_dssp HH-HCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHHH
T ss_pred hc-CCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhcc
Confidence 21 238999999998752 2334456666667899999999999853
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-18 Score=149.82 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=86.2
Q ss_pred CCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 88 ~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
.+.+..+|+|+|.||||||||+|+|++. + +.++++||||+++.... .+..+.++||||+....... ..+
T Consensus 68 ~k~g~a~V~ivG~PNvGKSTL~n~Lt~~-~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~------~~~ 139 (376)
T 4a9a_A 68 ARTGVASVGFVGFPSVGKSTLLSKLTGT-E-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDG------RGR 139 (376)
T ss_dssp CBCSSEEEEEECCCCHHHHHHHHHHHSB-C-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----------CH
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHhCC-C-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhh------hHH
Confidence 4566789999999999999999999998 4 77899999999986543 37789999999987642211 123
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhc-----CCcEEEEeecCCC
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLTKTDT 215 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~-----~~p~i~v~nK~D~ 215 (243)
..+++...+.+|++++|+|++++.... ..+...|... ..|.++++||.|.
T Consensus 140 g~~~l~~i~~ad~il~vvD~~~p~~~~-~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 140 GKQVIAVARTCNLLFIILDVNKPLHHK-QIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp HHHHHHHHHHCSEEEEEEETTSHHHHH-HHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred HHHHHHHHHhcCccccccccCccHHHH-HHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 344555555699999999998643221 2233344433 4688999999996
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-17 Score=150.65 Aligned_cols=135 Identities=21% Similarity=0.289 Sum_probs=94.1
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccc--cccCCCCceEEEEEEEeC------------------------------
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV--RTSDKPGLTQTINFFKLG------------------------------ 137 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~--~vs~~~gtT~~~~~~~~~------------------------------ 137 (243)
...++|+++|.+|+|||||+|+|++. ... .++..++|++........
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~-~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQ-EVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTS-CCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC-ccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 45789999999999999999999998 433 467777776543221110
Q ss_pred ------------CcEEEEeCCCCCCCccchHHHHH--HHHHHHHHHhcccCccEEEEEEeCCC-CCChhhHHHHHHHHhc
Q 026112 138 ------------TKLCLVDLPGYGFAYAKEEVKDA--WEELVKEYVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS 202 (243)
Q Consensus 138 ------------~~~~liDTpG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~v~~vvd~~~-~~~~~~~~~~~~l~~~ 202 (243)
..+.+|||||+...... .+.+. +......++.. +|++++|+|+.. +....+..+++.+...
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~-~~~~~~~f~~~~~~~l~~---aD~il~VvDa~~~~~~~~~~~~l~~l~~~ 217 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQ-RVSRGYDFPAVLRWFAER---VDLIILLFDAHKLEISDEFSEAIGALRGH 217 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC--------CCSCHHHHHHHHHHH---CSEEEEEEETTSCCCCHHHHHHHHHTTTC
T ss_pred cceEEeccccccCCEEEEECcCCCCcchh-HHHHHhhHHHHHHHHHHh---CCEEEEEEeCCcCCCCHHHHHHHHHHHhc
Confidence 26899999998752110 01100 22233333333 899999999977 4667777888888877
Q ss_pred CCcEEEEeecCCCCChHHHHHHHHHHH
Q 026112 203 QTKYQVVLTKTDTVFPIDVARRAMQIE 229 (243)
Q Consensus 203 ~~p~i~v~nK~D~~~~~~~~~~~~~l~ 229 (243)
+.|+++|+||+|+....++......+.
T Consensus 218 ~~pvilVlNK~Dl~~~~el~~~~~~l~ 244 (550)
T 2qpt_A 218 EDKIRVVLNKADMVETQQLMRVYGALM 244 (550)
T ss_dssp GGGEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCccCHHHHHHHHHHhh
Confidence 899999999999998877766655554
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=129.28 Aligned_cols=114 Identities=15% Similarity=0.049 Sum_probs=66.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe--CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.++|+++|.+|+|||||+|+|++. .....++.+++|........ ...+.+|||||... +..+...++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~ 70 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGV-EDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG----------GRWLPGHCM 70 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC-----------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCc-cccCCCCccccceEEEEEECCEEEEEEEEECCCCcc----------chhhhhhhh
Confidence 469999999999999999999987 44566777788776544332 34688999999643 122233333
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCChH
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~~ 219 (243)
. .+|++++|+|.+...+... ..++..+.. .+.|+++|+||+|+....
T Consensus 71 ~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 122 (166)
T 3q72_A 71 A---MGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR 122 (166)
T ss_dssp -----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSC
T ss_pred h---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccccc
Confidence 3 3899999999875422111 233333433 368999999999997543
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=8.1e-18 Score=148.61 Aligned_cols=87 Identities=22% Similarity=0.182 Sum_probs=47.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE------------------------e---CCcEEEEeC
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK------------------------L---GTKLCLVDL 145 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~------------------------~---~~~~~liDT 145 (243)
.+|+++|.||+|||||+|+|++. . ..++++|+||++..... . ...+.+|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~-~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLV-D-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC-C-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 37999999999999999999998 4 77889999998764331 0 136899999
Q ss_pred CCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC
Q 026112 146 PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG 187 (243)
Q Consensus 146 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~ 187 (243)
||+...... ...+...++...+.+|++++|+|++.+
T Consensus 79 pG~~~~a~~------~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 79 AGLVPGAHE------GRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp C---------------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcccchhh------hhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 998542111 123445555666779999999998764
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.4e-18 Score=131.85 Aligned_cols=114 Identities=20% Similarity=0.186 Sum_probs=73.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
..++|+++|.+|+|||||+|+|++.. .....+..+.+... ....+..+.+|||||.... ......++
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~-~~~~~~~~~~~Dt~G~~~~----------~~~~~~~~- 72 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGE-VVTTIPTIGFNVET-VTYKNLKFQVWDLGGLTSI----------RPYWRCYY- 72 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSS-CCCCCCCSSEEEEE-EEETTEEEEEEEECCCGGG----------GGGGGGGC-
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC-CCCcCCcCccceEE-EEECCEEEEEEECCCChhh----------hHHHHHHh-
Confidence 45799999999999999999999873 22222322322211 1123678999999997431 11122222
Q ss_pred cccCccEEEEEEeCCCCCChh--hHHHHHHHHh---cCCcEEEEeecCCCCChH
Q 026112 171 TRVSLKRVCLLIDTKWGVKPR--DHELISLMER---SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~--~~~~~~~l~~---~~~p~i~v~nK~D~~~~~ 219 (243)
..+|++++|+|++.+.+.. ...+...+.. .+.|+++|+||+|+....
T Consensus 73 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 124 (171)
T 1upt_A 73 --SNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 124 (171)
T ss_dssp --TTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC
Confidence 3499999999988653322 2233333332 478999999999998653
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-17 Score=128.56 Aligned_cols=138 Identities=15% Similarity=0.131 Sum_probs=84.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++........+..+.+........ ...+.+|||||.... ......
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~ 83 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF----------RAVTRS 83 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT----------CHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHh----------hhhHHH
Confidence 4579999999999999999999987422222333344443333333 247899999996431 122333
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi~ 243 (243)
++.. +|++++|+|++...+... ..++..+.. .+.|+++|+||+|+...... ..+.+++.....+..+++++
T Consensus 84 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~S 158 (179)
T 1z0f_A 84 YYRG---AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDV--TYEEAKQFAEENGLLFLEAS 158 (179)
T ss_dssp HHHT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTTCEEEECC
T ss_pred Hhcc---CCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccccc--CHHHHHHHHHHcCCEEEEEe
Confidence 3333 899999999886422222 234444433 46899999999999653221 12233444445555666653
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-18 Score=160.40 Aligned_cols=117 Identities=18% Similarity=0.212 Sum_probs=83.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCc--------------eEEE------E------------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL--------------TQTI------N------------------ 132 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gt--------------T~~~------~------------------ 132 (243)
..++|+++|.+|+|||||+|+|++. ....++..|+| |++. .
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~-~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGE-NLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTS-SCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC-CCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 4579999999999999999999998 55677777776 3321 0
Q ss_pred ------------------EEEe----CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCCh
Q 026112 133 ------------------FFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP 190 (243)
Q Consensus 133 ------------------~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~ 190 (243)
.+.. +..+.+|||||+.+... .......++.. +|++++|+|++.+.+.
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~-------~~~~~~~~i~~---aD~vL~Vvda~~~~s~ 216 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA-------RNELSLGYVNN---CHAILFVMRASQPCTL 216 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT-------CHHHHTHHHHS---SSEEEEEEETTSTTCH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh-------HHHHHHHHHHh---CCEEEEEEeCCCccch
Confidence 0000 04799999999864211 11233344433 9999999999888777
Q ss_pred hhHHHH-HHHHhcCCcEEEEeecCCCCCh
Q 026112 191 RDHELI-SLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 191 ~~~~~~-~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
.+...+ +.+...+.|+++|+||+|+...
T Consensus 217 ~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 217 GERRYLENYIKGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred hHHHHHHHHHHhhCCCEEEEEECcccccc
Confidence 776544 3555668899999999999754
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.72 E-value=9e-18 Score=132.42 Aligned_cols=118 Identities=29% Similarity=0.293 Sum_probs=82.3
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|||||||+|+|++.. ..++..+++|.+..... .+..+.+|||||.......... ..+...+
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~----~~~~~~~ 80 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSID----EIIARDY 80 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTC--EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHH----HHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC--ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHH----HHHHHHH
Confidence 4699999999999999999999873 45677788887654332 3678999999997653221111 1222233
Q ss_pred HhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
+.. ..+|++++|+|.... .....++..+...+.|+++|+||+|+...
T Consensus 81 ~~~-~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 127 (188)
T 2wjg_A 81 IIN-EKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKS 127 (188)
T ss_dssp HHH-HCCSEEEEEEEGGGH--HHHHHHHHHHHTTTCCEEEEEECHHHHHH
T ss_pred Hhc-cCCCEEEEEecchhH--HHHHHHHHHHHhcCCCEEEEEEhhhcccc
Confidence 321 238999999998642 33345666666678999999999998543
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-17 Score=128.48 Aligned_cols=138 Identities=14% Similarity=0.100 Sum_probs=83.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++........+..+++........ +..+.+|||||.... ......
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~ 80 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY----------HSLAPM 80 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGG----------GGGTHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhh----------hhhhHH
Confidence 3469999999999999999999987321212223333333332222 347899999996431 112223
Q ss_pred HHhcccCccEEEEEEeCCCCCCh-hhHHHHHHHHhc---CCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKP-RDHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~-~~~~~~~~l~~~---~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi~ 243 (243)
++.. +|++++|+|++.+.+. ....++..+... +.|+++|+||+|+....+. ..+.+++.....+..+++++
T Consensus 81 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~S 155 (181)
T 2efe_B 81 YYRG---AAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKV--TAEDAQTYAQENGLFFMETS 155 (181)
T ss_dssp HHTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCS--CHHHHHHHHHHTTCEEEECC
T ss_pred Hhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccC--CHHHHHHHHHHcCCEEEEEE
Confidence 3333 8999999998764321 223445555443 6889999999999754321 11233444444555555553
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-17 Score=132.77 Aligned_cols=115 Identities=16% Similarity=0.189 Sum_probs=74.5
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccc--cCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT--SDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~v--s~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
...++|+++|.+|+|||||+|+|++.. ...+ .+..+.+... +...+..+.+|||||.... ..+...
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~-~~~~~~~~t~~~~~~~-~~~~~~~~~i~Dt~G~~~~----------~~~~~~ 82 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQ-SSSKHITATVGYNVET-FEKGRVAFTVFDMGGAKKF----------RGLWET 82 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC-----CCCCCSSEEEEE-EEETTEEEEEEEECCSGGG----------GGGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCC-CcccccccccceeEEE-EEeCCEEEEEEECCCCHhH----------HHHHHH
Confidence 456799999999999999999999983 2332 4444433222 2234678999999997431 112222
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc-----------CCcEEEEeecCCCCChH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS-----------QTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~-----------~~p~i~v~nK~D~~~~~ 219 (243)
++ ..+|++++|+|++...+... ..++..+... +.|+++|+||+|+....
T Consensus 83 ~~---~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 143 (199)
T 4bas_A 83 YY---DNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK 143 (199)
T ss_dssp GC---TTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC
T ss_pred HH---hcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC
Confidence 22 34999999999986532222 1333333222 78999999999998763
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.6e-17 Score=129.75 Aligned_cols=122 Identities=14% Similarity=0.104 Sum_probs=75.5
Q ss_pred CCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 89 ~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
....++|+++|.+|||||||+|++.+............++...... .....+.+|||||........ |. .
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-----~~--~ 89 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPT-----FD--Y 89 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTT-----CC--H
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhh-----hh--c
Confidence 3457899999999999999999998863211111112222222221 124679999999964311100 10 0
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhc-----CCcEEEEeecCCCCChHH
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~-----~~p~i~v~nK~D~~~~~~ 220 (243)
..++.. +|++++|+|++.........+..++... +.|+++|+||+|+.....
T Consensus 90 ~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~ 146 (196)
T 3llu_A 90 EMIFRG---TGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDH 146 (196)
T ss_dssp HHHHHT---CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHH
T ss_pred cccccc---CCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhh
Confidence 233333 8999999999876334444555555432 789999999999987543
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-18 Score=152.31 Aligned_cols=121 Identities=28% Similarity=0.319 Sum_probs=81.4
Q ss_pred CCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CC-cEEEEeCCCCCCCccc--hHHHHHHH
Q 026112 89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GT-KLCLVDLPGYGFAYAK--EEVKDAWE 162 (243)
Q Consensus 89 ~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~-~~~liDTpG~~~~~~~--~~~~~~~~ 162 (243)
....++|+++|.+|+|||||+|+|++. ....++..+|+|.+...... +. .+.+|||||+.+.... .....
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~-~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~--- 106 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQ-NVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEK--- 106 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHH---
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcC-CCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHH---
Confidence 345689999999999999999999998 44567888999888654432 33 7999999998753211 11111
Q ss_pred HHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHH
Q 026112 163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 163 ~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~ 220 (243)
...++. .+|++++|+|+ +.......+++.+...+.|+++|+||+|+.....
T Consensus 107 --~~~~l~---~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~ 157 (423)
T 3qq5_A 107 --ARRVFY---RADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKA 157 (423)
T ss_dssp --HHHHHT---SCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCC
T ss_pred --HHHHHh---cCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccH
Confidence 122333 39999999998 5667788899999988999999999999986543
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=8.8e-17 Score=142.13 Aligned_cols=139 Identities=19% Similarity=0.248 Sum_probs=97.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccc---cc-----------ccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGV---VR-----------TSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAK 154 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~---~~-----------vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~ 154 (243)
..+|+++|.+|+|||||+++|++.... .. .....|.|.+..... .+..+.+|||||+.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~----- 77 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA----- 77 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH-----
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH-----
Confidence 468999999999999999999974100 00 011456777764433 25789999999963
Q ss_pred hHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCC-hHHHHHHHHHHHHHH
Q 026112 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVF-PIDVARRAMQIEESL 232 (243)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~-~~~~~~~~~~l~~~l 232 (243)
.+..........+|++++|+|++.+...+..+.+..+...++| +++|+||+|+.. +.......+.+++.+
T Consensus 78 --------~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l 149 (397)
T 1d2e_A 78 --------DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELL 149 (397)
T ss_dssp --------HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHH
Confidence 2333334445569999999999988888888888888888999 789999999985 333334445566666
Q ss_pred hhCC-----CccccCC
Q 026112 233 KANN-----SLVQPVV 243 (243)
Q Consensus 233 ~~~~-----~~~~pi~ 243 (243)
...+ .+++|+|
T Consensus 150 ~~~~~~~~~~~~i~~S 165 (397)
T 1d2e_A 150 TEFGYKGEETPIIVGS 165 (397)
T ss_dssp HHTTSCTTTSCEEECC
T ss_pred HHcCCCcccCcEEEee
Confidence 6554 3455654
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-17 Score=128.10 Aligned_cols=114 Identities=13% Similarity=0.072 Sum_probs=78.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|+|||||+|+|++........+..|++........ +..+.+|||||+... ......+
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~~~ 75 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF----------RALAPMY 75 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGTHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhh----------hcccHhh
Confidence 469999999999999999999998433445566666655444333 357899999997431 1122333
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCCh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~~ 218 (243)
+.. +|++++|+|++.+.+... ..++..+... ..|+++|+||+|+...
T Consensus 76 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1z0j_A 76 YRG---SAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126 (170)
T ss_dssp HTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGG
T ss_pred CcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccc
Confidence 333 899999999876432222 3445555433 5789999999999754
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-18 Score=148.90 Aligned_cols=140 Identities=19% Similarity=0.198 Sum_probs=91.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE--e--CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~--~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+.|+|+|.+|||||||+|+|++.. ..+++++++|.+..... . +..+.++||||+.+.... +..+...
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~--~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~------~~~l~~~ 229 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAK--PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQ------GVGLGHQ 229 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEEC--CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTC------TTTTHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCC--CccccCCccccCceEEEEEeCCCceEEEecCCCCcccccc------cchhHHH
Confidence 4689999999999999999999873 55788899888765433 2 267999999997531110 0112233
Q ss_pred HHhcccCccEEEEEEeCCC---CCChhh-HHHHHHHHh-----cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCc
Q 026112 168 YVSTRVSLKRVCLLIDTKW---GVKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 238 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~---~~~~~~-~~~~~~l~~-----~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~ 238 (243)
|++....++++++|+|++. .....+ ..+...+.. ..+|+++|+||+|+....+ ..+.+.+.+... ..
T Consensus 230 fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e---~~~~l~~~l~~~-~~ 305 (342)
T 1lnz_A 230 FLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAE---NLEAFKEKLTDD-YP 305 (342)
T ss_dssp HHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH---HHHHHHHHCCSC-CC
T ss_pred HHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHH---HHHHHHHHhhcC-CC
Confidence 3444444999999999875 211222 345555654 3689999999999987542 233444444322 34
Q ss_pred cccCC
Q 026112 239 VQPVV 243 (243)
Q Consensus 239 ~~pi~ 243 (243)
++|+|
T Consensus 306 v~~iS 310 (342)
T 1lnz_A 306 VFPIS 310 (342)
T ss_dssp BCCCS
T ss_pred EEEEE
Confidence 55553
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.2e-17 Score=144.17 Aligned_cols=141 Identities=19% Similarity=0.307 Sum_probs=97.9
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccc-cccccCCCCceEEEEEEE--e------------------------CCcEEE
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFK--L------------------------GTKLCL 142 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~-~~~vs~~~gtT~~~~~~~--~------------------------~~~~~l 142 (243)
...++|+++|.+|+|||||+++|++... .......+|+|.+..+.. . ...+.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 3457999999999999999999997521 111222355565543211 0 146899
Q ss_pred EeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCC-ChhhHHHHHHHHhcCC-cEEEEeecCCCCChHH
Q 026112 143 VDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFPID 220 (243)
Q Consensus 143 iDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-~~~~~~~~~~l~~~~~-p~i~v~nK~D~~~~~~ 220 (243)
|||||+. .+...+......+|++++|+|++++. ..+..+.+..+...+. |+++|+||+|+.....
T Consensus 88 iDtPGh~-------------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~ 154 (410)
T 1kk1_A 88 IDAPGHE-------------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEK 154 (410)
T ss_dssp EECSSHH-------------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHH
T ss_pred EECCChH-------------HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHH
Confidence 9999962 24445556666789999999999875 6666677777766665 7999999999998776
Q ss_pred HHHHHHHHHHHHhh---CCCccccCC
Q 026112 221 VARRAMQIEESLKA---NNSLVQPVV 243 (243)
Q Consensus 221 ~~~~~~~l~~~l~~---~~~~~~pi~ 243 (243)
.....+.+++.+.. ...+++|+|
T Consensus 155 ~~~~~~~i~~~l~~~~~~~~~~i~vS 180 (410)
T 1kk1_A 155 ALENYRQIKEFIEGTVAENAPIIPIS 180 (410)
T ss_dssp HHHHHHHHHHHHTTSTTTTCCEEECB
T ss_pred HHHHHHHHHHHHHhcCcCCCeEEEee
Confidence 66666777777765 234555553
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-17 Score=127.58 Aligned_cols=115 Identities=15% Similarity=0.045 Sum_probs=71.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|+|||||+|+|++. ......+.+|++........+ ..+.+|||||..... ...+...+
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~ 74 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK-QERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD--------KSWSQESC 74 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC---------------CHHHHHT
T ss_pred EEEEEEECCCCccHHHHHHHHhcC-CCccccCccccceeEEEEEECCEEEEEEEEecCCCCccc--------hhhhHHhh
Confidence 469999999999999999999998 434455667766544433332 368899999974310 11122223
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc----CCcEEEEeecCCCCCh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS----QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~----~~p~i~v~nK~D~~~~ 218 (243)
+ ..+|++++|+|.+...+... ..++..+... +.|+++|+||+|+...
T Consensus 75 ~---~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~ 126 (175)
T 2nzj_A 75 L---QGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARC 126 (175)
T ss_dssp T---TSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTT
T ss_pred c---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccc
Confidence 2 23899999999875422111 2344444443 6899999999999754
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.72 E-value=6.6e-17 Score=130.32 Aligned_cols=126 Identities=18% Similarity=0.329 Sum_probs=82.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe----CCcEEEEeCCCCCCCccchHHHHHHHH-HH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEE-LV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~-~~ 165 (243)
..++|+++|.+|+|||||+|+|++.. ....+++++.+...... +..+.+|||||... +.. +.
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~ 72 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ---YRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHES----------LRFQLL 72 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC---CCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHH----------HHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---cccccCCcceeeEEEEecCCCccEEEEEECCCChh----------HHHHHH
Confidence 45799999999999999999999873 23344444444433333 35699999999632 122 34
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhHHHHH----HHH-----hcCCcEEEEeecCCCCChHHHHHHHHHHHHHHh
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS----LME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 233 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~----~l~-----~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~ 233 (243)
..|+.. +|++++|+|++. .......+.+ .+. ..+.|+++|+||+|+..........+.+.+.+.
T Consensus 73 ~~~~~~---~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~ 145 (214)
T 2fh5_B 73 DRFKSS---ARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELN 145 (214)
T ss_dssp HHHGGG---EEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHhh---CCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHH
Confidence 444443 899999999875 1122222222 222 236899999999999876555556666666555
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=4.6e-17 Score=144.30 Aligned_cols=140 Identities=18% Similarity=0.148 Sum_probs=95.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc--cc-----cc--cc------CCCCceEEEEEEE---eCCcEEEEeCCCCCCCc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW--GV-----VR--TS------DKPGLTQTINFFK---LGTKLCLVDLPGYGFAY 152 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~--~~-----~~--vs------~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~ 152 (243)
..++|+++|.+|+|||||+|+|++.. .. .. .. ...|+|.+..... .+..+.+|||||+.+
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~-- 87 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD-- 87 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG--
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH--
Confidence 45799999999999999999999831 00 00 00 1345565543322 357899999999753
Q ss_pred cchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCCh-HHHHHHHHHHHH
Q 026112 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFP-IDVARRAMQIEE 230 (243)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~-~~~~~~~~~l~~ 230 (243)
+...+..++ ..+|++++|+|++++...+..+++..+...++| +++|+||+|+... .......+.+++
T Consensus 88 --------f~~~~~~~~---~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~ 156 (405)
T 2c78_A 88 --------YIKNMITGA---AQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRD 156 (405)
T ss_dssp --------GHHHHHHHH---TTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHH---HHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHH
Confidence 112222233 349999999999988888888888888888999 8999999999853 333344455666
Q ss_pred HHhhCC-----CccccCC
Q 026112 231 SLKANN-----SLVQPVV 243 (243)
Q Consensus 231 ~l~~~~-----~~~~pi~ 243 (243)
.+...+ .+++|+|
T Consensus 157 ~l~~~~~~~~~~~~i~~S 174 (405)
T 2c78_A 157 LLNQYEFPGDEVPVIRGS 174 (405)
T ss_dssp HHHHTTSCTTTSCEEECC
T ss_pred HHHHhcccccCCCEEEcc
Confidence 665544 3455554
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.72 E-value=7.6e-17 Score=144.11 Aligned_cols=140 Identities=16% Similarity=0.194 Sum_probs=92.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccc---------ccccCCC----------------------CceEEEEEEE---e
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV---------VRTSDKP----------------------GLTQTINFFK---L 136 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~---------~~vs~~~----------------------gtT~~~~~~~---~ 136 (243)
..++|+++|.+|+|||||+|+|++.... ...+..+ |.|.++.+.. .
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 4579999999999999999999875310 1111222 3444433322 2
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCC-cEEEEeecCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDT 215 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~-p~i~v~nK~D~ 215 (243)
+..+.+|||||+.+ +...+..++ ..+|++++|+|++.+...+..+++..+...+. |+++|+||+|+
T Consensus 103 ~~~~~iiDtpGh~~----------f~~~~~~~~---~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl 169 (434)
T 1zun_B 103 KRKFIIADTPGHEQ----------YTRNMATGA---STCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDL 169 (434)
T ss_dssp SEEEEEEECCCSGG----------GHHHHHHHH---TTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTT
T ss_pred CceEEEEECCChHH----------HHHHHHHHH---hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcC
Confidence 55799999999743 112222333 34999999999998887778777777777777 59999999999
Q ss_pred CC--hHHHHHHHHHHHHHHhhCC-----CccccCC
Q 026112 216 VF--PIDVARRAMQIEESLKANN-----SLVQPVV 243 (243)
Q Consensus 216 ~~--~~~~~~~~~~l~~~l~~~~-----~~~~pi~ 243 (243)
.. +.......+.+++.+...+ ..++|+|
T Consensus 170 ~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vS 204 (434)
T 1zun_B 170 NGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMS 204 (434)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECC
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEe
Confidence 86 3334455566676666655 3455553
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.71 E-value=5.2e-17 Score=141.47 Aligned_cols=126 Identities=20% Similarity=0.256 Sum_probs=87.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccc-----cccCCCC----------------------ceEE-------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-----RTSDKPG----------------------LTQT------------- 130 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~-----~vs~~~g----------------------tT~~------------- 130 (243)
..|+|+++|.+|+|||||+|+|++.. .. .++..|+ +|++
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~-~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRD-FLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSC-CSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCC-cCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999973 22 3444454 2222
Q ss_pred -------------EEEEE-eCCcEEEEeCCCCCCCcc---chHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhH
Q 026112 131 -------------INFFK-LGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH 193 (243)
Q Consensus 131 -------------~~~~~-~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~ 193 (243)
+.... .+..+.+|||||+..... ...+.+.+..++..|+.. ..+++++|+|+..++...+.
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiL~v~~a~~~~~~~~~ 186 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK--ENCLILAVSPANSDLANSDA 186 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTS--TTEEEEEEEETTSCGGGCHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcC--CCeEEEEEecCCCccchhHH
Confidence 11111 146799999999875321 333444566677777763 35677788888766655554
Q ss_pred -HHHHHHHhcCCcEEEEeecCCCCChH
Q 026112 194 -ELISLMERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 194 -~~~~~l~~~~~p~i~v~nK~D~~~~~ 219 (243)
.+++.+...+.|+++|+||+|+....
T Consensus 187 ~~i~~~~~~~~~~~i~V~NK~Dl~~~~ 213 (353)
T 2x2e_A 187 LKVAKEVDPQGQRTIGVITKLDLMDEG 213 (353)
T ss_dssp HHHHHHHCTTCTTEEEEEECGGGSCTT
T ss_pred HHHHHHhCcCCCceEEEeccccccCcc
Confidence 47777777789999999999998653
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-17 Score=130.43 Aligned_cols=138 Identities=14% Similarity=0.070 Sum_probs=88.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++........+..|++........ +..+.+|||||.... ......
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~ 91 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF----------HSLAPM 91 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGG----------GGGTHH
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhh----------HhhhHH
Confidence 3579999999999999999999987433456667777766554443 346899999996431 112223
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi~ 243 (243)
++.. +|++++|+|++...+... ..++..+... +.|+++|+||+|+...... ..+.+++.....+..+++++
T Consensus 92 ~~~~---~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~~~~S 166 (192)
T 2fg5_A 92 YYRG---SAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREV--PLKDAKEYAESIGAIVVETS 166 (192)
T ss_dssp HHTT---CSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHTTTCEEEECB
T ss_pred hhcc---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccccc--CHHHHHHHHHHcCCEEEEEe
Confidence 3333 899999999876422222 2344444433 6899999999999643221 12234444455555555553
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.5e-17 Score=128.10 Aligned_cols=132 Identities=20% Similarity=0.223 Sum_probs=80.0
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccccc-ccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~-~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
...++|+++|.+|+|||||+|+|++.... ...+..++++.+. .+..+.+|||||+..... .+..++...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~------~~~~~~~~~ 115 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVKLRY------KLSDYLKTR 115 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----CCTTCSEEEETTCCBSSC------CHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----cCCeEEEEECCCCchHHH------HHHHHHHhh
Confidence 35689999999999999999999987311 1122333333322 467899999999854211 122233222
Q ss_pred HhcccCccEEEEEEeCC-CCCC--hhhHHHHHHHHh------cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhh
Q 026112 169 VSTRVSLKRVCLLIDTK-WGVK--PRDHELISLMER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~-~~~~--~~~~~~~~~l~~------~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~ 234 (243)
. ..+|++++|+|++ .... .....+...+.. .+.|+++|+||+|+..........+.+.+.++.
T Consensus 116 ~---~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~l~~ 187 (193)
T 2ged_A 116 A---KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQK 187 (193)
T ss_dssp G---GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHH
T ss_pred c---ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHHHHHH
Confidence 2 3389999999987 3211 111122222221 379999999999998776666666666665543
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-17 Score=130.41 Aligned_cols=135 Identities=13% Similarity=0.056 Sum_probs=81.8
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEeC---CcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
...++|+++|.+|+|||||+|+|++.. ....+.+++.+.. ....+ ..+.+|||||.... ..+
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~ 78 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----------AAI 78 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSC---CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----------HHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhh----------HHH
Confidence 356799999999999999999999873 2334444443322 12222 36889999997541 122
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCcc
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV 239 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~ 239 (243)
...++.. +|++++|+|++...+... ..++..+.. .+.|+++|+||+|+....+. ..+.+.+.....+..+
T Consensus 79 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 153 (206)
T 2bov_A 79 RDNYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQV--SVEEAKNRAEQWNVNY 153 (206)
T ss_dssp HHHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHTCEE
T ss_pred HHHHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccc--cHHHHHHHHHHhCCeE
Confidence 3333333 899999999876421111 233333332 26899999999999754321 1122333333344455
Q ss_pred ccC
Q 026112 240 QPV 242 (243)
Q Consensus 240 ~pi 242 (243)
+++
T Consensus 154 ~~~ 156 (206)
T 2bov_A 154 VET 156 (206)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-17 Score=131.05 Aligned_cols=113 Identities=17% Similarity=0.138 Sum_probs=73.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
..++|+++|.+|+|||||+|+|++... ....+..+.+... +...+..+.+|||||.... ......++.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~t~~~~~~~-~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~ 82 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEE-IVINNTRFLMWDIGGQESL----------RSSWNTYYT 82 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSC-EEEECCSCSSCEE-EEETTEEEEEEECCC--------------CGGGHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC-CcCcCCCccceEE-EEECCEEEEEEECCCCHhH----------HHHHHHHhc
Confidence 457999999999999999999997633 3444444433222 1223678999999997431 112223333
Q ss_pred cccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
.+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+...
T Consensus 83 ---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 83 ---NTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp ---TCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred ---CCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence 3999999999887533222 233333322 47899999999999763
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=9.9e-17 Score=134.06 Aligned_cols=122 Identities=21% Similarity=0.209 Sum_probs=84.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++. ....++.++++|...... ..+..+.+|||||+.+..... . .+...+..
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~--~-~~~~~i~~ 110 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGE-QVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN--H-QALELIKG 110 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTS-CCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEEC--H-HHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccch--H-HHHHHHHH
Confidence 3479999999999999999999998 445678888887765433 236689999999986542221 1 11222333
Q ss_pred HHhcccCccEEEEEEeCCC-CCChhhHHHHHHHHhc-----CCcEEEEeecCCCCC
Q 026112 168 YVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS-----QTKYQVVLTKTDTVF 217 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~-~~~~~~~~~~~~l~~~-----~~p~i~v~nK~D~~~ 217 (243)
++. ...+|++++|+|... .+...+..+++.+... ..|+++|+||+|+..
T Consensus 111 ~l~-~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 111 FLV-NRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp HTT-TCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred HHh-cCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 332 235899999987643 3555666777777653 249999999999963
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-17 Score=127.02 Aligned_cols=113 Identities=14% Similarity=0.103 Sum_probs=74.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.+|+++|.+|+|||||+|+|++........+..+.+........+ ..+.+|||||.... ......++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~~~~~ 73 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF----------ASLAPXYY 73 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhh----------hhhhhhhh
Confidence 589999999999999999999874222334444544444333332 37899999996431 11233333
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
. .+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+...
T Consensus 74 ~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 74 R---NAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp T---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred c---cCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 3 3899999999886422222 233434432 36899999999999754
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.1e-17 Score=151.36 Aligned_cols=140 Identities=16% Similarity=0.150 Sum_probs=96.3
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccccccccc------------------------------CCCCceEEEEE---EEe
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS------------------------------DKPGLTQTINF---FKL 136 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs------------------------------~~~gtT~~~~~---~~~ 136 (243)
...++|+++|.+|+|||||+|+|++... .... ..+|+|.+... ...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~-~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLN-IVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSS-CSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcC-CccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 4578999999999999999999997621 1111 02577776532 234
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC-------CChhhHHHHHHHHhcCCc-EEE
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQTK-YQV 208 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-------~~~~~~~~~~~l~~~~~p-~i~ 208 (243)
+..+.+|||||+.. +..........+|++++|+|++.+ ...+..+.+..+...++| +++
T Consensus 244 ~~~~~iiDTPG~e~-------------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIV 310 (611)
T 3izq_1 244 RANFTIVDAPGHRD-------------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLII 310 (611)
T ss_dssp SCEEEEEECCSSSC-------------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEEECCCCcc-------------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEE
Confidence 67899999999854 344455556669999999999864 334566677777777765 999
Q ss_pred EeecCCCCC--hHHHHHHHHHHHHHHhhCC-----CccccCC
Q 026112 209 VLTKTDTVF--PIDVARRAMQIEESLKANN-----SLVQPVV 243 (243)
Q Consensus 209 v~nK~D~~~--~~~~~~~~~~l~~~l~~~~-----~~~~pi~ 243 (243)
|+||+|+.. ..........+...+...+ ..++|+|
T Consensus 311 VvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vS 352 (611)
T 3izq_1 311 AMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPIS 352 (611)
T ss_dssp EEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECC
T ss_pred EEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeee
Confidence 999999987 3334444555555554333 3455654
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.9e-17 Score=125.65 Aligned_cols=134 Identities=13% Similarity=0.059 Sum_probs=78.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEeC---CcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.++|+++|.+|+|||||+|+|++.. ....+.+++.+... ...+ ..+.+|||||.... .....
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~~~ 70 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----------AAIRD 70 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C----------HHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc---cCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchh----------HHHHH
Confidence 3689999999999999999999873 23333343333211 1222 36889999996431 22333
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCcccc
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 241 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~p 241 (243)
.++.. +|++++|+|++...+... ..++..+.. .+.|+++|+||+|+....+. ..+.+++.....+..+++
T Consensus 71 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~ 145 (168)
T 1u8z_A 71 NYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQV--SVEEAKNRADQWNVNYVE 145 (168)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCS--CHHHHHHHHHHHTCEEEE
T ss_pred HHhhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCcc--CHHHHHHHHHHcCCeEEE
Confidence 33333 899999999875422111 233333322 36899999999999754321 112233333334445555
Q ss_pred CC
Q 026112 242 VV 243 (243)
Q Consensus 242 i~ 243 (243)
++
T Consensus 146 ~S 147 (168)
T 1u8z_A 146 TS 147 (168)
T ss_dssp CC
T ss_pred eC
Confidence 43
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-17 Score=130.53 Aligned_cols=137 Identities=18% Similarity=0.151 Sum_probs=80.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe-C--------------------------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G-------------------------------- 137 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~-~-------------------------------- 137 (243)
..++|+++|.+|+|||||+|+|++........+..+.......... +
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 4579999999999999999999997321111111111111111111 1
Q ss_pred -------CcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh-cCCcEEE
Q 026112 138 -------TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-SQTKYQV 208 (243)
Q Consensus 138 -------~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-~~~p~i~ 208 (243)
..+.+|||||.... ......++. .+|++++|+|++.+.+... ..++..+.. .+.|+++
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~---~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piil 152 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERY----------ASIVPLYYR---GATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIIL 152 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGC----------TTTHHHHHT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred ccCccceeEEEEEECCCcHHH----------HHHHHHHhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 57899999995431 112233333 3899999999886532222 234444433 4689999
Q ss_pred EeecCCCCChHHHHHHHHHHHHHHhhCCCccccCC
Q 026112 209 VLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243 (243)
Q Consensus 209 v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi~ 243 (243)
|+||+| ..... ...+.+++.+...+..++|++
T Consensus 153 v~NK~D-~~~~~--~~~~~~~~~~~~~~~~~~~~S 184 (208)
T 3clv_A 153 VANKID-KNKFQ--VDILEVQKYAQDNNLLFIQTS 184 (208)
T ss_dssp EEECTT-CC-CC--SCHHHHHHHHHHTTCEEEEEC
T ss_pred EEECCC-ccccc--CCHHHHHHHHHHcCCcEEEEe
Confidence 999999 32211 112344555555566666654
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-17 Score=132.60 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=71.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc-ccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~-~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
..++|+++|.+|+|||||+|+|++.. ......+..+.+.. .+...+..+.+|||||..... .....++
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~l~Dt~G~~~~~----------~~~~~~~ 88 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE-KFKSSSLSFTVFDMSGQGRYR----------NLWEHYY 88 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEE-EEECSSCEEEEEEECCSTTTG----------GGGGGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEE-EEEECCEEEEEEECCCCHHHH----------HHHHHHH
Confidence 46799999999999999999999873 11222222222111 111236789999999965411 1122222
Q ss_pred hcccCccEEEEEEeCCCCCChh--hHHHHHHHHh-----cCCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWGVKPR--DHELISLMER-----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~--~~~~~~~l~~-----~~~p~i~v~nK~D~~~~ 218 (243)
..+|++++|+|++...+.. ...+...+.. .+.|+++|+||+|+...
T Consensus 89 ---~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 89 ---KEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp ---GGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred ---hcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence 3389999999987642111 1222333333 47899999999999764
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-17 Score=130.27 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=76.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
..++|+++|.+|+|||||+|+|++. ......+..|.+..... ..+..+.+|||||... +......++.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~-~~~~~~~t~g~~~~~~~-~~~~~l~i~Dt~G~~~----------~~~~~~~~~~ 82 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE-DISHITPTQGFNIKSVQ-SQGFKLNVWDIGGQRK----------IRPYWRSYFE 82 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS-CCEEEEEETTEEEEEEE-ETTEEEEEEECSSCGG----------GHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC-CCCcccCcCCeEEEEEE-ECCEEEEEEECCCCHH----------HHHHHHHHhC
Confidence 4679999999999999999999987 43445555554433222 2367899999999643 1223334443
Q ss_pred cccCccEEEEEEeCCCCCChhh-HHHHH-HHH---hcCCcEEEEeecCCCCChH
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRD-HELIS-LME---RSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~-~l~---~~~~p~i~v~nK~D~~~~~ 219 (243)
. +|++++|+|++...+... ..++. .+. ..+.|+++|+||+|+....
T Consensus 83 ~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 133 (181)
T 1fzq_A 83 N---TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 133 (181)
T ss_dssp T---CSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred C---CCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC
Confidence 3 899999999876422222 12222 222 2468999999999998643
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.5e-17 Score=128.80 Aligned_cols=115 Identities=19% Similarity=0.166 Sum_probs=73.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeC---CcEEEEeCCCCCCCccchHHHHHHH-HHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWE-ELVK 166 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~-~~~~ 166 (243)
..++|+++|.+|+|||||+|+|++........+..+++........+ ..+.+|||||... +. .+..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~ 88 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER----------FRKSMVQ 88 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHH----------HHTTTHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchh----------hhhhhhH
Confidence 45799999999999999999999873212222333333333333322 4789999999531 12 2333
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH----hcCCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~~ 218 (243)
.++.. +|++++|+|++...+... ..++..+. ..+.|+++|+||+|+...
T Consensus 89 ~~~~~---~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 1z06_A 89 HYYRN---VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSA 142 (189)
T ss_dssp HHHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGG
T ss_pred HHhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 44443 899999999876422111 23333333 236899999999999654
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=5.4e-17 Score=146.92 Aligned_cols=131 Identities=15% Similarity=0.143 Sum_probs=87.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccc-----------------------------cccccCCCCceEEEEEEE---eCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-----------------------------VVRTSDKPGLTQTINFFK---LGT 138 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~-----------------------------~~~vs~~~gtT~~~~~~~---~~~ 138 (243)
...+|+++|.+|+|||||+|+|++... .......+|+|.+..... .+.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 457999999999999999999986511 011223456777654333 367
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC-------CChhhHHHHHHHHhcCC-cEEEEe
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQT-KYQVVL 210 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-------~~~~~~~~~~~l~~~~~-p~i~v~ 210 (243)
.+.+|||||+.+ +...+..++ ..+|++++|+|++.+ ......+.+..+...+. |+++|+
T Consensus 112 ~~~iiDTPG~~~----------f~~~~~~~~---~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvvi 178 (483)
T 3p26_A 112 NFTIVDAPGHRD----------FVPNAIMGI---SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAM 178 (483)
T ss_dssp EEEEECCCCCGG----------GHHHHHHHH---TTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred eEEEEECCCcHH----------HHHHHHHhh---hhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEE
Confidence 899999999843 122223333 349999999999876 34566677777777775 599999
Q ss_pred ecCCCCC--hHHHHHHHHHHHHHHhh
Q 026112 211 TKTDTVF--PIDVARRAMQIEESLKA 234 (243)
Q Consensus 211 nK~D~~~--~~~~~~~~~~l~~~l~~ 234 (243)
||+|+.. .....+..+.+.+.+..
T Consensus 179 NK~Dl~~~~~~~~~~i~~~~~~~l~~ 204 (483)
T 3p26_A 179 NKMDNVDWSQQRFEEIKSKLLPYLVD 204 (483)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHHH
T ss_pred ECcCcccchHHHHHHHHHHHHHHHHH
Confidence 9999986 33344455555555543
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=7.8e-17 Score=142.75 Aligned_cols=140 Identities=18% Similarity=0.245 Sum_probs=93.0
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--------------E-----E---EEeCCcEEEEeCCC
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--------------N-----F---FKLGTKLCLVDLPG 147 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--------------~-----~---~~~~~~~~liDTpG 147 (243)
...++|+++|.+|+|||||+|+|++.. ......+..+|... . . ......+.+|||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIW-TSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCC-CCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcc-cccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 456899999999999999999999852 11111111111100 0 0 00114789999999
Q ss_pred CCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCC-ChhhHHHHHHHHhcCC-cEEEEeecCCCCChHHHHHHH
Q 026112 148 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFPIDVARRA 225 (243)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-~~~~~~~~~~l~~~~~-p~i~v~nK~D~~~~~~~~~~~ 225 (243)
+.+ +..........+|++++|+|+..+. ..+..+++..+...+. |+++|+||+|+.+..+.....
T Consensus 85 h~~-------------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~ 151 (403)
T 3sjy_A 85 HEV-------------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQY 151 (403)
T ss_dssp CGG-------------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHH
T ss_pred cHH-------------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHH
Confidence 743 1222222233499999999999875 6667777777777665 899999999999987777777
Q ss_pred HHHHHHHhhCC---CccccCC
Q 026112 226 MQIEESLKANN---SLVQPVV 243 (243)
Q Consensus 226 ~~l~~~l~~~~---~~~~pi~ 243 (243)
+.+++.+...+ .+++|+|
T Consensus 152 ~~i~~~l~~~~~~~~~ii~vS 172 (403)
T 3sjy_A 152 RQIKQFTKGTWAENVPIIPVS 172 (403)
T ss_dssp HHHHHHHTTSTTTTCCEEECB
T ss_pred HHHHHHHHhhCCCCCEEEEEE
Confidence 77777775543 3455543
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.9e-17 Score=125.51 Aligned_cols=137 Identities=15% Similarity=0.082 Sum_probs=83.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|+|||||+|+|++........+..+++........ +..+.+|||||.... ......+
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~~~~ 75 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY----------HSLAPMY 75 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHh----------hhhhHHh
Confidence 468999999999999999999987322223344455444433332 347899999996431 1122333
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi~ 243 (243)
+. .+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+...... ..+.+.+.....+..+++++
T Consensus 76 ~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~S 149 (170)
T 1r2q_A 76 YR---GAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAV--DFQEAQSYADDNSLLFMETS 149 (170)
T ss_dssp HT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTTCEEEECC
T ss_pred cc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcccccc--CHHHHHHHHHHcCCeEEEEe
Confidence 33 3899999999876422111 234444433 26889999999998653221 11223334444555555553
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-17 Score=132.45 Aligned_cols=115 Identities=24% Similarity=0.222 Sum_probs=69.8
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
...++|+++|.+|+|||||+|+|++........+..+++........ ...+.+|||||.... .....
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~ 95 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF----------RSIAK 95 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTC----------HHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcch----------hhhHH
Confidence 45689999999999999999999987422333444444433333332 245899999996431 12233
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~ 217 (243)
.++.. +|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+..
T Consensus 96 ~~~~~---~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 147 (199)
T 2p5s_A 96 SYFRK---ADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRD 147 (199)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHH
T ss_pred HHHhh---CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 33333 899999999876422222 234444443 3689999999999863
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=142.03 Aligned_cols=141 Identities=23% Similarity=0.305 Sum_probs=94.1
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccc-cccccCCCCceEEEEEEEe--------------------------CCcEEE
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFKL--------------------------GTKLCL 142 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~-~~~vs~~~gtT~~~~~~~~--------------------------~~~~~l 142 (243)
...++|+++|.+++|||||+++|++... .......+|.|.+..+... ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 3567999999999999999999997521 1112223566665432110 146899
Q ss_pred EeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCC-ChhhHHHHHHHHhcCC-cEEEEeecCCCCChHH
Q 026112 143 VDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFPID 220 (243)
Q Consensus 143 iDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-~~~~~~~~~~l~~~~~-p~i~v~nK~D~~~~~~ 220 (243)
|||||+. .+...+......+|++++|+|++++. ..+..+.+..+...+. |+++|+||+|+.....
T Consensus 86 iDtPGh~-------------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~ 152 (408)
T 1s0u_A 86 VDSPGHE-------------TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQ 152 (408)
T ss_dssp EECSSHH-------------HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTT
T ss_pred EECCCHH-------------HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHH
Confidence 9999962 34455666667789999999999875 5666677767766665 7999999999987654
Q ss_pred HHHHHHHHHHHHhh---CCCccccCC
Q 026112 221 VARRAMQIEESLKA---NNSLVQPVV 243 (243)
Q Consensus 221 ~~~~~~~l~~~l~~---~~~~~~pi~ 243 (243)
.....+.+++.+.. ...+++|+|
T Consensus 153 ~~~~~~~i~~~l~~~~~~~~~~i~vS 178 (408)
T 1s0u_A 153 AEENYEQIKEFVKGTIAENAPIIPIS 178 (408)
T ss_dssp TTTHHHHHHHHHTTSTTTTCCEEEC-
T ss_pred HHHHHHHHHHHHhhcCCCCCeEEEee
Confidence 44445556666654 234555654
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.1e-17 Score=125.44 Aligned_cols=110 Identities=13% Similarity=0.067 Sum_probs=69.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||+|+|++... ...+.+++.+. ..... +..+.+|||||.... ..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~~~~ 70 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTF---IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF----------ASMRDL 70 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC---CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----------HHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC---cccCCCCcceeEEEEEEECCEEEEEEEEECCCchhh----------HHHHHH
Confidence 6899999999999999999998732 22333333222 22222 234889999996531 122233
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH----hcCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~~ 218 (243)
++.. +|++++|+|.....+... ..++..+. ..+.|+++|+||+|+...
T Consensus 71 ~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1kao_A 71 YIKN---GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE 123 (167)
T ss_dssp HHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred Hhcc---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccccc
Confidence 3333 899999999876422111 22222222 247899999999998654
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=7.2e-17 Score=126.61 Aligned_cols=135 Identities=13% Similarity=0.075 Sum_probs=82.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++.. ....+.+++.+... ... + ..+.+|||||.... ..+.
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~ 83 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----------AAIR 83 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC---CCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----------HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCC---CCCcCCCccceEEEEEEEECCEEEEEEEEECCCCccc----------HHHH
Confidence 45799999999999999999999873 23344444433221 122 2 36889999997541 1223
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccc
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 240 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~ 240 (243)
..++.. +|++++|+|++....... ..++..+.. .+.|+++|+||+|+...... ..+.+++.....+..++
T Consensus 84 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~ 158 (187)
T 2a9k_A 84 DNYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQV--SVEEAKNRAEQWNVNYV 158 (187)
T ss_dssp HHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCS--CHHHHHHHHHHTTCEEE
T ss_pred HHHhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCcc--CHHHHHHHHHHcCCeEE
Confidence 333333 899999999875421111 223333322 36899999999998754221 12234444455555555
Q ss_pred cCC
Q 026112 241 PVV 243 (243)
Q Consensus 241 pi~ 243 (243)
+++
T Consensus 159 ~~S 161 (187)
T 2a9k_A 159 ETS 161 (187)
T ss_dssp ECC
T ss_pred EeC
Confidence 553
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.4e-17 Score=126.45 Aligned_cols=114 Identities=13% Similarity=0.086 Sum_probs=71.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++........+..+.+........+ ..+.+|||||... +......
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 75 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER----------FRSLRTP 75 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGG----------GHHHHGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchh----------hhhhHHH
Confidence 35799999999999999999999873212222223332222222233 3789999999642 1222223
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh-------cCCcEEEEeecCCCCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-------~~~p~i~v~nK~D~~~ 217 (243)
++ ..+|++++|+|.+.+.+... ..++..+.. .+.|+++|+||+|+..
T Consensus 76 ~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 130 (177)
T 1wms_A 76 FY---RGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE 130 (177)
T ss_dssp GG---TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred HH---hcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc
Confidence 33 34899999999876422221 233333332 4679999999999973
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=4.6e-17 Score=125.34 Aligned_cols=111 Identities=17% Similarity=0.168 Sum_probs=70.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (243)
.+|+++|.+|+|||||+|+|++.. .....+..+... ......+..+.+|||||... +..+...++.
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~-~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~-- 66 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV-ETVEYKNISFTVWDVGGQDK----------IRPLWRHYFQ-- 66 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHC-SSCCCCCSSCCE-EEEECSSCEEEEEECCCCGG----------GHHHHHHHTT--
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC-cCcccCcCceeE-EEEEECCEEEEEEEcCCChh----------hHHHHHHHhc--
Confidence 379999999999999999999873 222222222111 11122367899999999743 1223333443
Q ss_pred cCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 173 VSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
.+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+...
T Consensus 67 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 67 -NTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp -TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred -cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 3899999999876422221 223333322 27899999999999764
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=4e-17 Score=129.73 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=71.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++........+..+++........+ ..+.+|||||... . ......
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~------~----~~~~~~ 94 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER------F----NSITSA 94 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGG------G----HHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHH------H----HHHHHH
Confidence 45689999999999999999999873212222333333333333333 3689999999643 1 222333
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
++.. +|++++|+|++...+... ..++..+.. .+.|+++|+||+|+...
T Consensus 95 ~~~~---~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~ 146 (192)
T 2il1_A 95 YYRS---AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD 146 (192)
T ss_dssp HHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 3333 899999999886432222 234444443 36899999999999754
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.2e-17 Score=128.29 Aligned_cols=114 Identities=18% Similarity=0.146 Sum_probs=75.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++.. ......++++.+.. ....+ ..+.+|||||.... ....
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~ 82 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT--YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF----------RTIT 82 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC--CCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------CTTH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhh----------hhhH
Confidence 35799999999999999999999874 22333444444433 22222 46899999996431 1122
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChh-hHHHHHHHHhc---CCcEEEEeecCCCCChH
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS---QTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~~---~~p~i~v~nK~D~~~~~ 219 (243)
..++.. +|++++|+|++...+.. ...++..+... +.|+++|+||+|+....
T Consensus 83 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~ 137 (196)
T 3tkl_A 83 SSYYRG---AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 137 (196)
T ss_dssp HHHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred HHHHhh---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccc
Confidence 333333 89999999988642211 13344444433 68999999999997653
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.70 E-value=7.2e-17 Score=128.96 Aligned_cols=114 Identities=17% Similarity=0.146 Sum_probs=75.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|+|||||+|+|++........+..+++........ +..+.+|||||+.. +......+
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~ 77 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER----------YRTITTAY 77 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchh----------hcchHHHh
Confidence 479999999999999999999987422222333444444333332 34789999999743 12233333
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
+. .+|++++|+|++.+..... ..++..+.. .+.|+++|+||+|+...
T Consensus 78 ~~---~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (203)
T 1zbd_A 78 YR---GAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 128 (203)
T ss_dssp GG---GCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTS
T ss_pred hc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcc
Confidence 33 4899999999876422111 234444443 36899999999999754
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=6.2e-17 Score=127.49 Aligned_cols=114 Identities=17% Similarity=0.168 Sum_probs=74.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
..++|+++|.+|+|||||+|+|++.. .....+..+.+... ....+..+.+|||||... +......
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~-~~~~~~~~~~~Dt~G~~~----------~~~~~~~--- 81 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKT-LEHRGFKLNIWDVGGQKS----------LRSYWRN--- 81 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEE-EEETTEEEEEEEECCSHH----------HHTTGGG---
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEE-EEECCEEEEEEECCCCHh----------HHHHHHH---
Confidence 46799999999999999999999873 33333433433221 112367899999999632 1112222
Q ss_pred cccCccEEEEEEeCCCCCChhh-HHHHH-HHHh---cCCcEEEEeecCCCCChH
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRD-HELIS-LMER---SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~-~l~~---~~~p~i~v~nK~D~~~~~ 219 (243)
....+|++++|+|++.+.+... ..++. .+.. .+.|+++|+||+|+....
T Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 135 (186)
T 1ksh_A 82 YFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 135 (186)
T ss_dssp GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC
Confidence 2345899999999876532222 12333 3332 368999999999998653
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.8e-17 Score=127.94 Aligned_cols=133 Identities=15% Similarity=0.101 Sum_probs=79.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE--Ee-C--CcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~--~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.++|+++|.+|+|||||+|+|++.. ....+++++.+.... .. + ..+.+|||||.... ..+..
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~ 70 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNH---FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY----------SAMRD 70 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS---CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-------------CTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHH----------HHHHH
Confidence 4689999999999999999999873 344555555443221 12 2 34778999996432 11222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCcccc
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 241 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~p 241 (243)
.++.. +|++++|+|.....+... ..++..+.. .+.|+++|+||+|+............+.+.+ +..+++
T Consensus 71 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~ 144 (189)
T 4dsu_A 71 QYMRT---GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSY---GIPFIE 144 (189)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHH---TCCEEE
T ss_pred HHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHc---CCeEEE
Confidence 33333 899999999876422111 233333333 3689999999999975433333333333333 344555
Q ss_pred CC
Q 026112 242 VV 243 (243)
Q Consensus 242 i~ 243 (243)
++
T Consensus 145 ~S 146 (189)
T 4dsu_A 145 TS 146 (189)
T ss_dssp CC
T ss_pred Ee
Confidence 43
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=8.7e-17 Score=126.83 Aligned_cols=115 Identities=19% Similarity=0.116 Sum_probs=72.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEE-EEEEEe-C-----------CcEEEEeCCCCCCCccchHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-INFFKL-G-----------TKLCLVDLPGYGFAYAKEEV 157 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~-~~~~~~-~-----------~~~~liDTpG~~~~~~~~~~ 157 (243)
..++|+++|.+|+|||||+|+|++........+..+.+.. ...... + ..+.+|||||...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------- 82 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER------- 82 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG-------
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH-------
Confidence 3579999999999999999999987321111222222221 112222 2 3689999999743
Q ss_pred HHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 158 KDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
+......++ ..+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+...
T Consensus 83 ---~~~~~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (195)
T 3bc1_A 83 ---FRSLTTAFF---RDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQ 142 (195)
T ss_dssp ---GHHHHHHTT---TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGG
T ss_pred ---HHHHHHHHH---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 122333333 34999999999876432222 344444443 47899999999999753
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=4.2e-17 Score=127.41 Aligned_cols=114 Identities=14% Similarity=0.181 Sum_probs=71.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++.. .......+.++.+.. ....+ ..+.+|||||... +....
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~----------~~~~~ 77 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGA-FLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER----------FRSVT 77 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC-CCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC-CCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHH----------HHHHH
Confidence 45799999999999999999999873 222233333333332 22222 3789999999643 12222
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
..++ ..+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+...
T Consensus 78 ~~~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 78 HAYY---RDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 131 (180)
T ss_dssp -CCG---GGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSC
T ss_pred HHHc---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcc
Confidence 2222 34899999999876422222 234444443 46899999999999854
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-17 Score=130.31 Aligned_cols=135 Identities=16% Similarity=0.089 Sum_probs=78.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++... ...+.+++.+. ..... + ..+.+|||||...... +.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~ 71 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF---VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSI----------FP 71 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC---CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCC----------CC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC---CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhH----------HH
Confidence 457999999999999999999997632 33333333322 12222 2 4678999999754211 11
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHH----HhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccc
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM----ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 240 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l----~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~ 240 (243)
..++ ..+|++++|+|.+...+... ..++..+ ...+.|+++|+||+|+....... .+.+++.....+..++
T Consensus 72 ~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~ 146 (181)
T 3t5g_A 72 QTYS---IDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVIS--YEEGKALAESWNAAFL 146 (181)
T ss_dssp GGGT---TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSC--HHHHHHHHHHTTCEEE
T ss_pred HHHH---hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceec--HHHHHHHHHHhCCcEE
Confidence 1122 23899999999876321111 1233223 22368999999999996543221 1223334444455555
Q ss_pred cCC
Q 026112 241 PVV 243 (243)
Q Consensus 241 pi~ 243 (243)
+++
T Consensus 147 ~~S 149 (181)
T 3t5g_A 147 ESS 149 (181)
T ss_dssp ECC
T ss_pred EEe
Confidence 553
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.4e-17 Score=129.17 Aligned_cols=137 Identities=15% Similarity=0.092 Sum_probs=82.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++........+..+++....... .+..+.+|||||+.... .+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~ 93 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYR----------AITSA 93 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTC----------TTHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhh----------hhhHH
Confidence 357999999999999999999998732111222233333332222 24578999999975421 12223
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
++.. +|++++|+|++.+..... ..++..+.. .+.|+++|+||+|+...... ..+.++......+..++++
T Consensus 94 ~~~~---~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~ 167 (193)
T 2oil_A 94 YYRG---AVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREV--PTEEARMFAENNGLLFLET 167 (193)
T ss_dssp HHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTTCEEEEE
T ss_pred Hhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccccccc--CHHHHHHHHHHcCCEEEEE
Confidence 3333 899999999876422111 234444443 26899999999999754221 1122333334445555554
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-16 Score=127.59 Aligned_cols=120 Identities=20% Similarity=0.236 Sum_probs=75.2
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccc-cCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~v-s~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
...++|+++|.+|+|||||+|+|++....... +..+.++.+. .+..+.+|||||+... ...+..++...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~------~~~~~~~~~~~ 79 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVKL------RYKLSDYLKTR 79 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG----GGSSCEEEECCCCGGG------THHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe----eCceEEEEECCCcHHH------HHHHHHHHHhc
Confidence 45689999999999999999999987311111 2222222221 3568999999997431 11222222221
Q ss_pred HhcccCccEEEEEEeCC-C--CCChhhHHHHHHHHh------cCCcEEEEeecCCCCChHHHH
Q 026112 169 VSTRVSLKRVCLLIDTK-W--GVKPRDHELISLMER------SQTKYQVVLTKTDTVFPIDVA 222 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~-~--~~~~~~~~~~~~l~~------~~~p~i~v~nK~D~~~~~~~~ 222 (243)
...+|++++|+|++ . .+......+.+.+.. .+.|+++|+||+|+.......
T Consensus 80 ---~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 139 (218)
T 1nrj_B 80 ---AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS 139 (218)
T ss_dssp ---GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred ---cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH
Confidence 12379999999987 2 333333333333322 478999999999998764433
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.2e-17 Score=127.95 Aligned_cols=113 Identities=16% Similarity=0.170 Sum_probs=73.0
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEeC---CcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKLG---TKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
...++|+++|.+|+|||||+|+|++.. ....+.+|+.+... ...+ ..+.+|||||...... +
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~----------~ 73 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSY---FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA----------M 73 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSS---CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSC----------C
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCc---CccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHH----------H
Confidence 356799999999999999999999873 34445555443321 2222 4688999999754211 1
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHH----HhcCCcEEEEeecCCCCCh
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM----ERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l----~~~~~p~i~v~nK~D~~~~ 218 (243)
...++.. +|++++|+|.+....... ..++..+ ...+.|+++|+||+|+...
T Consensus 74 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 129 (181)
T 2fn4_A 74 REQYMRA---GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ 129 (181)
T ss_dssp HHHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGG
T ss_pred HHHHHhh---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 1222222 899999999876321111 1222222 2347899999999999754
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-17 Score=129.42 Aligned_cols=115 Identities=16% Similarity=0.089 Sum_probs=75.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++........+..+++........ +..+.+|||||...... ....
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~ 90 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRT----------ITTA 90 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCC----------SGGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhh----------hHHH
Confidence 3579999999999999999999987422222334444444333332 34789999999654211 1112
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~~ 218 (243)
++ ..+|++++|+|++...+... ..++..+... +.|+++|+||+|+...
T Consensus 91 ~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 2gf9_A 91 YY---RGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142 (189)
T ss_dssp GG---TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred hc---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 22 34899999999876422221 3455555443 6899999999999754
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=7.6e-17 Score=124.65 Aligned_cols=114 Identities=13% Similarity=0.003 Sum_probs=70.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccccc-ccCCCCceEEEEEEE-eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR-TSDKPGLTQTINFFK-LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~-vs~~~gtT~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.++|+++|.+|+|||||+|+|++...... ......++....... ....+.+|||||.... ..+...++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~~~~ 72 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF----------PAMQRLSI 72 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSC----------HHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhh----------HHHHHHhc
Confidence 46899999999999999999998631111 111122222211111 1246899999997541 12222333
Q ss_pred hcccCccEEEEEEeCCCCCChh-hHHHHHHHHh-----cCCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWGVKPR-DHELISLMER-----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~-----~~~p~i~v~nK~D~~~~ 218 (243)
.. +|++++|+|++.+.... ...++..+.. .+.|+++|+||+|+...
T Consensus 73 ~~---~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~ 124 (172)
T 2erx_A 73 SK---GHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS 124 (172)
T ss_dssp HH---CSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG
T ss_pred cc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc
Confidence 33 89999999987542211 2334444433 26899999999998754
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.1e-16 Score=135.95 Aligned_cols=141 Identities=21% Similarity=0.252 Sum_probs=93.2
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccc--hHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAK--EEVKDAWEEL 164 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~--~~~~~~~~~~ 164 (243)
...++|+++|.+|+|||||+|+|++.. ..++..+++|.+...... +..+.+|||||+.+.... .... ...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---~~~ 239 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK--PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIE---KQA 239 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC--CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHH---HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC--CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHH---HHH
Confidence 467899999999999999999999984 556778888887765442 456999999998653211 1111 111
Q ss_pred HHHHHhcccCccEEEEEEeCCCCC--Chh-hHHHHHHHHh-c-CCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCcc
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGV--KPR-DHELISLMER-S-QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV 239 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~--~~~-~~~~~~~l~~-~-~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~ 239 (243)
.. .....+|++++|+|++... ... ...++..+.. . +.|+++|+||+|+....+... +.+.+...+.++
T Consensus 240 ~~---~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~----~~~~~~~~~~~~ 312 (357)
T 2e87_A 240 IL---ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKR----LEKFVKEKGLNP 312 (357)
T ss_dssp HH---GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHH----HHHHHHHTTCCC
T ss_pred HH---HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHH----HHHHHHhcCCCe
Confidence 11 1223489999999976542 322 2455555543 2 799999999999998765432 333333445555
Q ss_pred ccC
Q 026112 240 QPV 242 (243)
Q Consensus 240 ~pi 242 (243)
+++
T Consensus 313 ~~i 315 (357)
T 2e87_A 313 IKI 315 (357)
T ss_dssp EEC
T ss_pred EEE
Confidence 554
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-17 Score=131.02 Aligned_cols=113 Identities=17% Similarity=0.162 Sum_probs=76.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
..++|+++|.+|+|||||+|+|++.. .....+..|.+.... ...+..+.+|||||.... ......++
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~t~~~~~~~~-~~~~~~~~i~Dt~G~~~~----------~~~~~~~~- 86 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNE-VVHTSPTIGSNVEEI-VINNTRFLMWDIGGQESL----------RSSWNTYY- 86 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTS-CEEEECCSSSSCEEE-EETTEEEEEEEESSSGGG----------TCGGGGGG-
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC-CCccCCcCceeeEEE-EECCEEEEEEECCCCHhH----------HHHHHHHh-
Confidence 46799999999999999999999883 345555555443222 224678999999997431 11112222
Q ss_pred cccCccEEEEEEeCCCCCChhh-HHHH-HHHH---hcCCcEEEEeecCCCCCh
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRD-HELI-SLME---RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~-~~l~---~~~~p~i~v~nK~D~~~~ 218 (243)
..+|++++|+|++...+... ..++ ..+. ..+.|+++|+||+|+...
T Consensus 87 --~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 87 --TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp --TTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 34899999999887533322 2233 3333 257899999999999763
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=139.57 Aligned_cols=123 Identities=17% Similarity=0.217 Sum_probs=89.9
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
+|+++|.+|+|||||+|+|+.. |+|.+..+.. .+..+.+|||||+.+. + ..+ ..++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~----------giTi~~~~~~~~~~~~~i~iiDtPGh~~f-----~----~~~-~~~~- 81 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK----------GTSSDITMYNNDKEGRNMVFVDAHSYPKT-----L----KSL-ITAL- 81 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE----------EEESSSEEEEECSSSSEEEEEECTTTTTC-----H----HHH-HHHH-
T ss_pred EEEEECCCCCCHHHHHHHHHhC----------CEEEEeeEEEEecCCeEEEEEECCChHHH-----H----HHH-HHHH-
Confidence 8999999999999999999832 3444443333 3678999999998541 1 111 1222
Q ss_pred cccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcE-EEEee-cCCCCChHHHHHHHHHHHHHHhhCC---Ccccc
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLT-KTDTVFPIDVARRAMQIEESLKANN---SLVQP 241 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~-i~v~n-K~D~~~~~~~~~~~~~l~~~l~~~~---~~~~p 241 (243)
..+|++++|+| ..+...+..+++..+...++|. ++|+| |+|+ .+.......+.+++.+...+ .+++|
T Consensus 82 --~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~ 153 (370)
T 2elf_A 82 --NISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECIS 153 (370)
T ss_dssp --HTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEE
T ss_pred --HHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 34999999999 8788888888888888889998 99999 9999 66555556677777776543 34455
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-16 Score=125.28 Aligned_cols=134 Identities=13% Similarity=0.136 Sum_probs=81.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccC-------CCCceEEEEEEEe--------CCcEEEEeCCCCCCCccch
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFKL--------GTKLCLVDLPGYGFAYAKE 155 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~-------~~gtT~~~~~~~~--------~~~~~liDTpG~~~~~~~~ 155 (243)
..++|+++|.+|+|||||+|.+.+.. .....+ ....|....+... ...+.+|||||....
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---- 87 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY---- 87 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC----
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH----
Confidence 35799999999999999999998763 222111 0112333332211 235889999996531
Q ss_pred HHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhH----HHHHHHHh-----cCCcEEEEeecCCCCChHHHHHHHH
Q 026112 156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH----ELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAM 226 (243)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~----~~~~~l~~-----~~~p~i~v~nK~D~~~~~~~~~~~~ 226 (243)
..+...++. .+|++++|+|++.+....+. .+.+++.. .+.|+++|+||+|+.... ..+
T Consensus 88 ------~~~~~~~~~---~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~----~~~ 154 (198)
T 3t1o_A 88 ------NASRKLILR---GVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDAL----PVE 154 (198)
T ss_dssp ------SHHHHHHTT---TCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCC----CHH
T ss_pred ------HHHHHHHHh---cCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccccc----CHH
Confidence 122333443 38999999998854322222 33334433 378999999999997642 223
Q ss_pred HHHHHHhhCCC-ccccC
Q 026112 227 QIEESLKANNS-LVQPV 242 (243)
Q Consensus 227 ~l~~~l~~~~~-~~~pi 242 (243)
.+++.+...+. .++++
T Consensus 155 ~~~~~~~~~~~~~~~~~ 171 (198)
T 3t1o_A 155 MVRAVVDPEGKFPVLEA 171 (198)
T ss_dssp HHHHHHCTTCCSCEEEC
T ss_pred HHHHHHHhcCCceEEEE
Confidence 44555556665 55555
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-17 Score=133.58 Aligned_cols=137 Identities=16% Similarity=0.115 Sum_probs=83.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe-C---CcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G---TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~-~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
..++|+++|.+|+|||||+|+|++...........+++........ + ..+.+|||||...... +..
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~ 79 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAV----------LKD 79 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSC----------CCH
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhch----------HHH
Confidence 4579999999999999999999976333334445555444433332 2 4589999999643211 112
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
.++. .+|++++|+|++.+.+..+ ..++..+.. .+.|+++|+||+|+....... ...+.......+..++++
T Consensus 80 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~ 154 (218)
T 4djt_A 80 VYYI---GASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKIS--KKLVMEVLKGKNYEYFEI 154 (218)
T ss_dssp HHHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CC--HHHHHHHTTTCCCEEEEE
T ss_pred HHhh---cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccC--HHHHHHHHHHcCCcEEEE
Confidence 2222 2899999999986533222 234444433 368999999999997643321 123344445555555554
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-16 Score=128.75 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=72.0
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
...++|+++|.+|+|||||+|+|++.. ......+.++.+. ..... + ..+.+|||||..... ..
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~ 85 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDK--FNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFR----------TI 85 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCC--CCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGT----------CC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC--CCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHH----------HH
Confidence 346899999999999999999999873 2223333333333 22222 2 468999999964311 11
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCC
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVF 217 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~ 217 (243)
...++. .+|++++|+|++.+..... ..++..+... +.|+++|+||+|+..
T Consensus 86 ~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 139 (213)
T 3cph_A 86 TTAYYR---GAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 139 (213)
T ss_dssp CHHHHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSS
T ss_pred HHHHhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 223333 3899999999876422111 2444444432 689999999999953
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.69 E-value=8.4e-17 Score=123.94 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=70.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||+|+|++.. ....+.+++.+... ... +..+.+|||||..... .+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----------~~~~~ 70 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGI---FVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT----------AMRDL 70 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC---CCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSST----------THHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC---CCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHH----------HHHHH
Confidence 689999999999999999999873 22233333332211 112 2358899999975421 12222
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
++.. +|++++|+|++...+... ..++..+.. .+.|+++|+||+|+...
T Consensus 71 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1c1y_A 71 YMKN---GQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123 (167)
T ss_dssp HHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGG
T ss_pred Hhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccccc
Confidence 3332 899999999876321111 233333332 37899999999999754
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-17 Score=131.91 Aligned_cols=112 Identities=16% Similarity=0.010 Sum_probs=72.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE---EEEEe--CCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~---~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++.. ....+.+|+.+. ..... ...+.+|||||.... ..+.
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~ 88 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGE---IPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY----------DRLR 88 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC---CCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------TTTG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC---CCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHH----------HHHh
Confidence 35799999999999999999999983 233333333322 11111 235689999995431 1112
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHhc--CCcEEEEeecCCCCCh
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~D~~~~ 218 (243)
..+ ...+|++++|+|++...+... ..++..+... +.|+++|+||+|+...
T Consensus 89 ~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 89 PLS---YADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp GGG---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCT
T ss_pred Hhh---ccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence 222 234899999999886422222 3455555543 6899999999999753
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6e-17 Score=124.89 Aligned_cols=114 Identities=17% Similarity=0.119 Sum_probs=70.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|+|||||+|+|++........+..+.+........ ...+.+|||||..... .+...+
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~~~ 74 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFD----------AITKAY 74 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTT----------CCCHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHH----------HHHHHH
Confidence 479999999999999999999987321111222222222222222 3478999999964311 112233
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh--cCCcEEEEeecCCCCCh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~--~~~p~i~v~nK~D~~~~ 218 (243)
+. .+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+...
T Consensus 75 ~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 124 (168)
T 1z2a_A 75 YR---GAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD 124 (168)
T ss_dssp HT---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGG
T ss_pred hc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcc
Confidence 33 3899999999876421111 234444433 37899999999999753
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.68 E-value=6e-17 Score=125.13 Aligned_cols=111 Identities=17% Similarity=0.177 Sum_probs=68.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.++|+++|.+|+|||||+|+|++.. ......+.++.+.. ....+ ..+.+|||||..... ....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----------~~~~ 70 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDK--FNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFR----------TITT 70 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC--CCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTS----------CCCH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC--CCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhh----------hhHH
Confidence 3689999999999999999999873 22223333333332 22222 368899999964311 1122
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~ 217 (243)
.++. .+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+..
T Consensus 71 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1g16_A 71 AYYR---GAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 122 (170)
T ss_dssp HHHT---TEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred HHhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCc
Confidence 2333 3899999999876422211 244444443 2689999999999953
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-17 Score=147.27 Aligned_cols=140 Identities=18% Similarity=0.221 Sum_probs=92.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccc-c----------------------ccccC------CCCceEEEEEE---EeCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-V----------------------VRTSD------KPGLTQTINFF---KLGT 138 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~-~----------------------~~vs~------~~gtT~~~~~~---~~~~ 138 (243)
..++|+++|.+|+|||||+|+|++... . +.+.+ ..|+|.++... ..+.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 346899999999999999999986410 0 00001 25667665322 2356
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCCh-------hhHHHHHHHHhcCCc-EEEEe
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-------RDHELISLMERSQTK-YQVVL 210 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~-------~~~~~~~~l~~~~~p-~i~v~ 210 (243)
.+.+|||||+.+ +..........+|++++|+|+.++..+ +..+.+..+...++| +++|+
T Consensus 86 ~~~iiDtPGh~~-------------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivvi 152 (458)
T 1f60_A 86 QVTVIDAPGHRD-------------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAV 152 (458)
T ss_dssp EEEEEECCCCTT-------------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEECCCcHH-------------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEE
Confidence 799999999753 233334445569999999999865322 455566666677886 99999
Q ss_pred ecCCCCC--hHHHHHHHHHHHHHHhhCC-----CccccCC
Q 026112 211 TKTDTVF--PIDVARRAMQIEESLKANN-----SLVQPVV 243 (243)
Q Consensus 211 nK~D~~~--~~~~~~~~~~l~~~l~~~~-----~~~~pi~ 243 (243)
||+|+.. +..+....+.+++.+...+ .+++|+|
T Consensus 153 NK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vS 192 (458)
T 1f60_A 153 NKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPIS 192 (458)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECC
T ss_pred EccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEee
Confidence 9999983 4444555566666555443 3455654
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-16 Score=123.44 Aligned_cols=136 Identities=13% Similarity=0.065 Sum_probs=76.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|+|||||+|+|++........+..+.+........ + ..+.+|||||... +......
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~- 74 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER----------FHALGPI- 74 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-----------------CC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHh----------hhhhHHH-
Confidence 469999999999999999999987321111222222222222222 2 3688999999643 1111112
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
....+|++++|+|++...+... ..++..+.. .+.|+++|+||+|+....... .+.+++.....+..++++
T Consensus 75 --~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~ 148 (170)
T 1z08_A 75 --YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVS--IQEAESYAESVGAKHYHT 148 (170)
T ss_dssp --SSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSC--HHHHHHHHHHTTCEEEEE
T ss_pred --HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccC--HHHHHHHHHHcCCeEEEe
Confidence 2235899999999876422122 233333432 468999999999997542211 122333334444555554
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-16 Score=141.73 Aligned_cols=133 Identities=19% Similarity=0.272 Sum_probs=86.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccc-cc----------------------------cccCCCCceEEEEEEE---eCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-VV----------------------------RTSDKPGLTQTINFFK---LGT 138 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~-~~----------------------------~vs~~~gtT~~~~~~~---~~~ 138 (243)
..++|+++|.+|+|||||+|+|+.... .. .....+|+|.+..... .+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 457999999999999999999986410 00 0011467777764332 367
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC-------CChhhHHHHHHHHhcCC-cEEEEe
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQT-KYQVVL 210 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-------~~~~~~~~~~~l~~~~~-p~i~v~ 210 (243)
.+.+|||||+.+ +..........+|++++|+|+..+ +..+..+.+..+...+. |+++|+
T Consensus 85 ~~~iiDtpG~~~-------------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivvi 151 (435)
T 1jny_A 85 FFTIIDAPGHRD-------------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAV 151 (435)
T ss_dssp EEEECCCSSSTT-------------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEE
T ss_pred EEEEEECCCcHH-------------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEE
Confidence 899999999854 222233344569999999999876 55566677777777776 599999
Q ss_pred ecCCCCC----hHHHHHHHHHHHHHHhhCC
Q 026112 211 TKTDTVF----PIDVARRAMQIEESLKANN 236 (243)
Q Consensus 211 nK~D~~~----~~~~~~~~~~l~~~l~~~~ 236 (243)
||+|+.. +.......+.+++.+...+
T Consensus 152 NK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~ 181 (435)
T 1jny_A 152 NKMDLTEPPYDEKRYKEIVDQVSKFMRSYG 181 (435)
T ss_dssp ECGGGSSSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred EcccCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 9999986 3334555667777766654
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=5e-16 Score=135.64 Aligned_cols=150 Identities=21% Similarity=0.276 Sum_probs=86.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCC------CCceEEEEEEE----e-C--CcEEEEeCCCCCCCccch---
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK------PGLTQTINFFK----L-G--TKLCLVDLPGYGFAYAKE--- 155 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~------~gtT~~~~~~~----~-~--~~~~liDTpG~~~~~~~~--- 155 (243)
.++|+++|.+|+|||||+|+|++.. ....... ...|....... . + ..+.+|||||+++.....
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~-~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTD-LYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCC-C---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCC-CCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 4689999999999999999998762 1211111 11232222211 1 2 268999999996542211
Q ss_pred -HHHHHHHHHHHHHHhcccC----------ccEEEEEEeC-CCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHH
Q 026112 156 -EVKDAWEELVKEYVSTRVS----------LKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR 223 (243)
Q Consensus 156 -~~~~~~~~~~~~~~~~~~~----------~d~v~~vvd~-~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~ 223 (243)
.+...+......|+..... +|+++|++++ .+++...+..+++.+. .++|+++|+||+|+....++..
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK~Dl~~~~ev~~ 194 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERER 194 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEECCSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEECCCCCCHHHHHH
Confidence 1111112222244443222 3578888875 5677777777777664 4789999999999999887777
Q ss_pred HHHHHHHHHhhCCCccccCC
Q 026112 224 RAMQIEESLKANNSLVQPVV 243 (243)
Q Consensus 224 ~~~~l~~~l~~~~~~~~pi~ 243 (243)
....+.+.+...+..+++++
T Consensus 195 ~k~~i~~~~~~~~i~~~~~S 214 (361)
T 2qag_A 195 LKKRILDEIEEHNIKIYHLP 214 (361)
T ss_dssp HHHHHHHHTTCC-CCSCCCC
T ss_pred HHHHHHHHHHHCCCCEEeCC
Confidence 66778888887777777654
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=9.2e-17 Score=126.27 Aligned_cols=136 Identities=13% Similarity=0.147 Sum_probs=81.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++.. ......+.++.+. .....+ ..+.+|||||... +....
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~ 76 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKK--FKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER----------FRSVT 76 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS--CCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC--CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH----------HHHHH
Confidence 35799999999999999999999873 2222333334333 222223 4789999999643 12222
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH---hcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCcccc
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 241 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~p 241 (243)
..+ ...+|++++|+|++.+.+... ..++..+. ..+.|+++|+||+|+....... .....+.....+..+++
T Consensus 77 ~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (186)
T 2bme_A 77 RSY---YRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVT--FLEASRFAQENELMFLE 151 (186)
T ss_dssp HTT---STTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHHHTTCEEEE
T ss_pred HHH---HhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC--HHHHHHHHHHcCCEEEE
Confidence 233 344999999999876422222 23443333 2468999999999996432211 12233334444555555
Q ss_pred CC
Q 026112 242 VV 243 (243)
Q Consensus 242 i~ 243 (243)
++
T Consensus 152 ~S 153 (186)
T 2bme_A 152 TS 153 (186)
T ss_dssp CC
T ss_pred ec
Confidence 43
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.9e-17 Score=127.84 Aligned_cols=114 Identities=15% Similarity=0.180 Sum_probs=73.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
..++|+++|.+|+|||||+|+|++........+..+.+.. .+...+..+.+|||||... +......++.
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~ 89 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKGNVTIKLWDIGGQPR----------FRSMWERYCR 89 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEETTEEEEEEEECCSHH----------HHTTHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE-EEEeCCEEEEEEECCCCHh----------HHHHHHHHHc
Confidence 4579999999999999999999987321122233332221 1222367899999999632 2223334443
Q ss_pred cccCccEEEEEEeCCCCCChhh-HHHH-HHHHh---cCCcEEEEeecCCCCCh
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRD-HELI-SLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~-~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
.+|++++|+|++....... ..++ ..+.. .+.|+++|+||+|+...
T Consensus 90 ---~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 90 ---GVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp ---TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred ---cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 3899999999876422221 1223 33332 47899999999999864
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.5e-17 Score=125.61 Aligned_cols=112 Identities=18% Similarity=0.164 Sum_probs=71.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEeC---CcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.++|+++|.+|+|||||+|+|++.. ......+.++.+... ...+ ..+.+|||||.... .....
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~ 81 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDS--FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----------RSLIP 81 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC--CCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGSH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC--CCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHH----------HHHHH
Confidence 3699999999999999999999873 222333444444322 2222 37899999996431 11222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChh-hHHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
.++.. +|++++|+|++.+.+.. ...++..+.. .+.|+++|+||+|+..+
T Consensus 82 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 134 (179)
T 2y8e_A 82 SYIRD---STVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134 (179)
T ss_dssp HHHHT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGG
T ss_pred HHhcC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 33332 89999999987532211 1233433332 36899999999999754
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.68 E-value=9.9e-17 Score=126.89 Aligned_cols=113 Identities=21% Similarity=0.174 Sum_probs=74.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|+|||||+|+|++........+..+++........ +..+.+|||||..... .....+
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~ 84 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFR----------TLTPSY 84 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGC----------CSHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhh----------hhhHHH
Confidence 469999999999999999999987422223334444444433332 3568999999964311 122233
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~ 217 (243)
+. .+|++++|+|++.+..... ..++..+.. .+.|+++|+||+|+..
T Consensus 85 ~~---~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 85 YR---GAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp HT---TCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred hc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence 33 3899999999876422222 244444543 3689999999999954
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-16 Score=120.99 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=69.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
++|+++|.+|+|||||+|+|++.. ......+++.+. ..... ...+.+|||||..... .....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----------~~~~~ 70 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH---FVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS----------AMRDQ 70 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC----------HHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc---CccccCCccceEEEEEEEECCEEEEEEEEECCCchhhh----------HHHHH
Confidence 589999999999999999999873 222333333222 11122 2357899999975411 12222
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
++.. +|++++|+|.+....... ..++..+.. .+.|+++|+||+|+...
T Consensus 71 ~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~ 123 (166)
T 2ce2_X 71 YMRT---GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAAR 123 (166)
T ss_dssp HHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCC
T ss_pred hhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhc
Confidence 3332 899999999875422111 233443332 26899999999999763
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-16 Score=126.24 Aligned_cols=112 Identities=14% Similarity=0.143 Sum_probs=70.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++... . ....+..+.+. .....+ ..+.+|||||... +..+.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~ 95 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAF-S-ERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER----------FRTIT 95 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEETTEEEEEEEECCTTCGG----------GHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCC-C-CCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHh----------HHHHH
Confidence 357999999999999999999998731 1 11111112222 222222 4789999999642 12233
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~ 217 (243)
..++.. +|++++|+|++...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 96 ~~~~~~---~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 96 QSYYRS---ANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE 148 (201)
T ss_dssp HHHHTT---CSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc
Confidence 444443 899999999875422111 244444443 3589999999999975
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-16 Score=128.33 Aligned_cols=136 Identities=18% Similarity=0.095 Sum_probs=80.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEE--EEEEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT--INFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~--~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++... .....+.++.+ ......+ ..+.+|||||...... ..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~ 74 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTY--TNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT----------IT 74 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCC--CTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTC----------CC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHH----------HH
Confidence 347999999999999999999998742 12222333322 2222222 3799999999653211 11
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCcccc
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 241 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~p 241 (243)
..++ ..+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+....... .+..++.....+..+++
T Consensus 75 ~~~~---~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~ 149 (206)
T 2bcg_Y 75 SSYY---RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVE--YDVAKEFADANKMPFLE 149 (206)
T ss_dssp GGGG---TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSC--HHHHHHHHHHTTCCEEE
T ss_pred HHhc---cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccC--HHHHHHHHHHcCCeEEE
Confidence 1222 33899999999876422222 234444433 358999999999997643211 11223333344555555
Q ss_pred CC
Q 026112 242 VV 243 (243)
Q Consensus 242 i~ 243 (243)
++
T Consensus 150 ~S 151 (206)
T 2bcg_Y 150 TS 151 (206)
T ss_dssp CC
T ss_pred Ee
Confidence 53
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.9e-17 Score=128.06 Aligned_cols=114 Identities=17% Similarity=0.119 Sum_probs=71.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++........+..+++........+ ..+.+|||||..... .+...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~ 89 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFR----------SITRS 89 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTS----------CCCHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhh----------hhHHH
Confidence 35699999999999999999999873211122223333333333333 378999999964311 11223
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~ 217 (243)
++. .+|++++|+|++...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 90 ~~~---~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 90 YYR---GAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140 (191)
T ss_dssp HHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred Hhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC
Confidence 333 3899999999876422222 234444443 2789999999999964
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.4e-18 Score=156.28 Aligned_cols=134 Identities=16% Similarity=0.136 Sum_probs=77.9
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccc------------------------------cCCCCceEEEEEEE---e
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT------------------------------SDKPGLTQTINFFK---L 136 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~v------------------------------s~~~gtT~~~~~~~---~ 136 (243)
...++|+++|.+|+|||||+|+|++... ... ...+|+|.+..... .
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~-~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELG-EINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHH-CC-------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcC-CcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4567899999999999999999975311 111 11457788765443 2
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC-----C--ChhhHHHHHHHHhcCCc-EEE
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-----V--KPRDHELISLMERSQTK-YQV 208 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-----~--~~~~~~~~~~l~~~~~p-~i~ 208 (243)
+..+.||||||+.+.... .......+|++++|+|+..+ + ..+..+.+..+...++| +++
T Consensus 254 ~~~i~iiDTPGh~~f~~~-------------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIv 320 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISG-------------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVV 320 (592)
T ss_dssp -----CCEEESSSEEEEE-------------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEE
T ss_pred CeEEEEEECCChHHHHHH-------------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEE
Confidence 578999999998642111 11112238999999998764 3 66777888888888887 999
Q ss_pred EeecCCCCC--hHHHHHHHHHHHHHH-hhCCC
Q 026112 209 VLTKTDTVF--PIDVARRAMQIEESL-KANNS 237 (243)
Q Consensus 209 v~nK~D~~~--~~~~~~~~~~l~~~l-~~~~~ 237 (243)
|+||+|+.. +.........+.+.+ ...+.
T Consensus 321 viNKiDl~~~~~~~~~~i~~el~~~l~~~~g~ 352 (592)
T 3mca_A 321 SVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGF 352 (592)
T ss_dssp EEECGGGGTTCHHHHHHHHHHHHHHHTTTSCC
T ss_pred EEeccccccccHHHHHHHHHHHHHHHHHhhCC
Confidence 999999976 445566667777777 44443
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-16 Score=125.84 Aligned_cols=112 Identities=14% Similarity=0.146 Sum_probs=69.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++.. ....+.+++.+. ..... + ..+.+|||||..... .+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~~ 83 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI---FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS----------AMR 83 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGC----------SSH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhH----------HHH
Confidence 45799999999999999999999873 223333333222 12222 2 246679999964311 112
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHH----HhcCCcEEEEeecCCCCCh
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM----ERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l----~~~~~p~i~v~nK~D~~~~ 218 (243)
..++.. +|++++|+|.+.+.+... ..++..+ ...+.|+++|+||+|+...
T Consensus 84 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 138 (183)
T 3kkq_A 84 EQYMRT---GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL 138 (183)
T ss_dssp HHHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTT
T ss_pred HHHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhc
Confidence 223322 899999999876421111 2333333 2347899999999998753
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.2e-17 Score=127.29 Aligned_cols=113 Identities=19% Similarity=0.176 Sum_probs=73.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++.. ......++++.+... ... + ..+.+|||||...... ..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~ 75 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNT--FSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRT----------IT 75 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC-----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSS----------CC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC--CCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhh----------hH
Confidence 45799999999999999999999873 224444555554432 222 3 4689999999543111 11
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc--CCcEEEEeecCCCCCh
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~--~~p~i~v~nK~D~~~~ 218 (243)
..++ ..+|++++|+|++.+.+... ..++..+... +.|+++|+||+|+...
T Consensus 76 ~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 76 STYY---RGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPER 128 (181)
T ss_dssp GGGG---TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGG
T ss_pred HHHh---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchh
Confidence 1222 33899999999886422222 2344444333 5899999999998754
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.3e-16 Score=125.98 Aligned_cols=115 Identities=14% Similarity=0.076 Sum_probs=65.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
...+|+++|.+|+|||||+|+|++.. ....+.+++.+.. .... ...+.+|||||... +..+.
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~ 99 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGA---FPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD----------YDRLR 99 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC----------CCCCCEEEEEEEEETTEEEEEEEEEC--------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCC---CCCCCCCccceeEEEEEEECCEEEEEEEEECCCchh----------hhHHH
Confidence 34799999999999999999999873 1222333332221 1122 23688999999643 12222
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhH--HHHHHHHhc--CCcEEEEeecCCCCChHHH
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPIDV 221 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~~--~~p~i~v~nK~D~~~~~~~ 221 (243)
..++. .+|++++|+|++.+.+.... .++..+... +.|+++|+||+|+......
T Consensus 100 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 156 (214)
T 2j1l_A 100 PLFYP---DASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSL 156 (214)
T ss_dssp --------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHH
T ss_pred HHHhc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchh
Confidence 33333 38999999998764222221 344455432 6899999999999876543
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-16 Score=124.88 Aligned_cols=114 Identities=14% Similarity=0.008 Sum_probs=70.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe--CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
..++|+++|.+|+|||||+|+|++........+..+.+........ ...+.+|||||.... ..+...+
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~ 76 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQF----------PAMQRLS 76 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSC----------HHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHh----------HHHHHHh
Confidence 4679999999999999999999986321111222222221111111 346899999996431 1222233
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh-----cCCcEEEEeecCCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-----~~~p~i~v~nK~D~~~ 217 (243)
+.. +|++++|+|++....... ..++..+.. .+.|+++|+||+|+..
T Consensus 77 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 77 ISK---GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp HHH---CSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred hcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 333 899999999875321111 233333332 2689999999999975
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-16 Score=128.32 Aligned_cols=114 Identities=16% Similarity=0.009 Sum_probs=75.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCC--cEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGT--KLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||++++++.. ....+.+++.+..... .+. .+.+|||||.... ..+.
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~ 95 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY----------DRLR 95 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSC---CCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGG----------TTTG
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCC---CCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhh----------HHHH
Confidence 45799999999999999999999872 3444555555443221 233 4559999997431 1111
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhH--HHHHHHHhc--CCcEEEEeecCCCCChHH
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~~--~~p~i~v~nK~D~~~~~~ 220 (243)
..+ ...+|++++|+|++.+.+.... .++..+... +.|+++|+||+|+.....
T Consensus 96 ~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 151 (204)
T 4gzl_A 96 PLS---YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 151 (204)
T ss_dssp GGG---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHH
T ss_pred HHH---hccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchh
Confidence 122 2348999999998864333222 455566554 799999999999986654
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-16 Score=124.63 Aligned_cols=114 Identities=17% Similarity=0.201 Sum_probs=71.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe-C---CcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G---TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~-~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
..++|+++|.+|+|||||+|+|++........+..+.......... + ..+.+|||||..... ....
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~----------~~~~ 74 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGG----------KMLD 74 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTC----------TTHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcccc----------chhh
Confidence 3479999999999999999999987321112222222222222222 2 579999999965321 1222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc-----CCc-EEEEeecCCCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS-----QTK-YQVVLTKTDTVF 217 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~-----~~p-~i~v~nK~D~~~ 217 (243)
.++. .+|++++|+|++.+.+... ..++..+... ..| +++|+||+|+..
T Consensus 75 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~ 129 (178)
T 2hxs_A 75 KYIY---GAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH 129 (178)
T ss_dssp HHHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred HHHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence 3333 3899999999876422222 2344444431 556 899999999965
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.3e-17 Score=128.83 Aligned_cols=113 Identities=20% Similarity=0.168 Sum_probs=73.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
..++|+++|.+|+|||||+|+|++.. .....+..+.+... ....+..+.+|||||...... ....+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~t~~~~~~~-~~~~~~~~~~~Dt~G~~~~~~----------~~~~~-- 86 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGD-VVTTVPTVGVNLET-LQYKNISFEVWDLGGQTGVRP----------YWRCY-- 86 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSC-CEEECSSTTCCEEE-EEETTEEEEEEEECCSSSSCC----------CCSSS--
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCC-CCCcCCCCceEEEE-EEECCEEEEEEECCCCHhHHH----------HHHHH--
Confidence 45799999999999999999998773 23333333332221 112367899999999754211 11111
Q ss_pred cccCccEEEEEEeCCCCCChhh--HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRD--HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
...+|++++|+|++.+.+... ..+...+.. .+.|+++|+||+|+...
T Consensus 87 -~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 87 -FSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp -STTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred -hhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 234899999999886533222 223333332 36899999999999865
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.9e-16 Score=124.02 Aligned_cols=110 Identities=15% Similarity=0.129 Sum_probs=67.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.++|+++|.+|+|||||+|+|++.. ....+.+++.+.. .... + ..+.+|||||... +.....
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~ 87 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNH---FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE----------YSAMRD 87 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-------------------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCC---CccccCCccceEEEEEEEECCEEEEEEEEECCChHH----------HHHHHH
Confidence 4699999999999999999999873 2233444443322 1222 2 3588999999642 122233
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~ 217 (243)
.++ ..+|++++|+|........+ ..++..+.. .+.|+++|+||+|+..
T Consensus 88 ~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 88 QYM---RTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp --C---TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred Hhh---CcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 333 34899999999876422222 233333332 3689999999999875
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-16 Score=127.04 Aligned_cols=114 Identities=16% Similarity=0.172 Sum_probs=69.0
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
...++|+++|.+|+|||||+|+|++.. .....+..+... ......+..+.+|||||.... ......++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~-~~~~~~t~~~~~-~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~ 94 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV-ETVEYKNICFTVWDVGGQDKI----------RPLWRHYF 94 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSC-CEEEEEETTEEE-EEEEETTEEEEEEECC---------------CTTHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCC-ccccCCcCceeE-EEEEECCEEEEEEECCCCHhH----------HHHHHHHh
Confidence 456899999999999999999998773 222222122111 111123568999999997431 11222333
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHH-Hh---cCCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLM-ER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l-~~---~~~p~i~v~nK~D~~~~ 218 (243)
.. +|++++|+|++.+.+... ..++..+ .. .+.|+++|+||+|+...
T Consensus 95 ~~---~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 95 QN---TQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp HT---CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred cc---CCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 33 899999999876522221 1233322 21 37899999999999764
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-16 Score=123.98 Aligned_cols=112 Identities=15% Similarity=-0.019 Sum_probs=72.3
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE---EEEEe--CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~---~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.++|+++|.+|+|||||+|+|++... ...+.+++.+. ..... ...+.+|||||.... ..+..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~ 71 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY----------DRLRP 71 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC---CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGG----------TTTGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC---CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhH----------HHHHH
Confidence 46899999999999999999998631 22333333222 11111 235779999997431 11111
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhH--HHHHHHHhc--CCcEEEEeecCCCCChH
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~~--~~p~i~v~nK~D~~~~~ 219 (243)
.+ ...+|++++|+|++.+.+.... .++..+... +.|+++|+||+|+....
T Consensus 72 ~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 125 (186)
T 1mh1_A 72 LS---YPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 125 (186)
T ss_dssp GG---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCH
T ss_pred Hh---ccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccc
Confidence 22 2348999999998764222222 355555544 78999999999997654
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-16 Score=126.44 Aligned_cols=136 Identities=18% Similarity=0.182 Sum_probs=57.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceE-EE--EEEEeC-----CcEEEEeCCCCCCCccchHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TI--NFFKLG-----TKLCLVDLPGYGFAYAKEEVKDAWEE 163 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~-~~--~~~~~~-----~~~~liDTpG~~~~~~~~~~~~~~~~ 163 (243)
.++|+++|.+|+|||||+|+|++. .......+.+|+. +. .....+ ..+.+|||||... +..
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~ 88 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK-GSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDL----------YKE 88 (208)
T ss_dssp EEEEEEC-----------------------------------CEEEECTTSSEEEEEEEEETTTTHH----------HHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC-CCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHH----------HHH
Confidence 469999999999999999999987 2222334444442 22 222222 3689999999631 222
Q ss_pred HHHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh------cCCcEEEEeecCCCCC-hHHHHHHHHHHHHHHhhC
Q 026112 164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVF-PIDVARRAMQIEESLKAN 235 (243)
Q Consensus 164 ~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~------~~~p~i~v~nK~D~~~-~~~~~~~~~~l~~~l~~~ 235 (243)
.... ....+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+.. .... ..+.+++.....
T Consensus 89 ~~~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v--~~~~~~~~~~~~ 163 (208)
T 2yc2_C 89 QISQ---YWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQV--RLDMAQDWATTN 163 (208)
T ss_dssp HHST---TCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CC--CHHHHHHHHHHT
T ss_pred HHHH---HHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccC--CHHHHHHHHHHc
Confidence 2222 2345899999999876432122 344555543 4789999999999976 3221 112334444445
Q ss_pred CCccccCC
Q 026112 236 NSLVQPVV 243 (243)
Q Consensus 236 ~~~~~pi~ 243 (243)
+..+++++
T Consensus 164 ~~~~~~~S 171 (208)
T 2yc2_C 164 TLDFFDVS 171 (208)
T ss_dssp TCEEEECC
T ss_pred CCEEEEec
Confidence 55555553
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.8e-16 Score=124.61 Aligned_cols=113 Identities=12% Similarity=0.018 Sum_probs=74.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++.. ....+.+|+.+.. .... + ..+.+|||||..... .+.
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~~~ 83 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDA---FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD----------RLR 83 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSS---CCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSST----------TTG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC---CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchh----------HHH
Confidence 45699999999999999999999873 2233334433221 1122 2 468899999975421 111
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHhc--CCcEEEEeecCCCCChH
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~D~~~~~ 219 (243)
..+ ...+|++++|+|++.+.+... ..++..+... +.|+++|+||+|+....
T Consensus 84 ~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (194)
T 2atx_A 84 PLS---YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDP 138 (194)
T ss_dssp GGG---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCH
T ss_pred HHh---cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccc
Confidence 122 234899999999876422222 2455556554 78999999999998653
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.66 E-value=8.6e-17 Score=127.50 Aligned_cols=115 Identities=16% Similarity=0.127 Sum_probs=76.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++........+..+++........ +..+.+|||||.. .+..+...
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~ 91 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE----------RYRTITTA 91 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHH----------HCHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChH----------HHHHHHHH
Confidence 4579999999999999999999987322222233344444433332 4469999999942 12233444
Q ss_pred HHhcccCccEEEEEEeCCCCCChh-hHHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
++.. +|++++|+|++...... ...++..+.. .+.|+++|+||+|+...
T Consensus 92 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 143 (191)
T 3dz8_A 92 YYRG---AMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143 (191)
T ss_dssp HHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 4443 89999999987532211 2345555544 46899999999998643
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-15 Score=143.02 Aligned_cols=126 Identities=20% Similarity=0.215 Sum_probs=92.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceE-----------------------------------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ----------------------------------------- 129 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~----------------------------------------- 129 (243)
..|+|+++|.+|+|||||+|+|+|.. ....+.. .+|+
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~-~LP~g~g-~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~ 127 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRD-FLPRGSG-IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 127 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSC-CSCCSSS-CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC-ccCcCCc-cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence 57899999999999999999999973 2111111 1121
Q ss_pred ----------EE---EE-EEeCCcEEEEeCCCCCCCc---cchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh
Q 026112 130 ----------TI---NF-FKLGTKLCLVDLPGYGFAY---AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 192 (243)
Q Consensus 130 ----------~~---~~-~~~~~~~~liDTpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~ 192 (243)
+. .+ .+....+.++||||+.... ....+...+..++..|+. ..+|++++|+|++.++...+
T Consensus 128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~--~~aDlIL~VVDAs~~~~~~d 205 (772)
T 3zvr_A 128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT--KENCLILAVSPANSDLANSD 205 (772)
T ss_dssp HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT--STTEEEEEEEETTSCSSSCH
T ss_pred hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh--cCCcEEEEEEcCCCCcchhH
Confidence 11 11 1124468999999998632 133445667778888876 45899999999998777777
Q ss_pred H-HHHHHHHhcCCcEEEEeecCCCCChHH
Q 026112 193 H-ELISLMERSQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 193 ~-~~~~~l~~~~~p~i~v~nK~D~~~~~~ 220 (243)
. .+++.+...+.|+++|+||+|++....
T Consensus 206 ~l~ll~~L~~~g~pvIlVlNKiDlv~~~~ 234 (772)
T 3zvr_A 206 ALKIAKEVDPQGQRTIGVITKLDLMDEGT 234 (772)
T ss_dssp HHHHHHHHCTTCSSEEEEEECTTSSCTTC
T ss_pred HHHHHHHHHhcCCCEEEEEeCcccCCcch
Confidence 6 788888888999999999999987543
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-16 Score=123.31 Aligned_cols=115 Identities=12% Similarity=0.075 Sum_probs=67.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe----CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
..++|+++|.+|+|||||+|+|++........+..+.+........ ...+.+|||||... +.....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~ 76 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER----------FQSLGV 76 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC--------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChH----------hhhhhH
Confidence 4579999999999999999999987321222222222222222222 23689999999532 112222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh-------cCCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-------~~~p~i~v~nK~D~~~~ 218 (243)
. ....+|++++|+|++.+..... ..++..+.. .+.|+++|+||+|+...
T Consensus 77 ~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 133 (182)
T 1ky3_A 77 A---FYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES 133 (182)
T ss_dssp C---CSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred H---HhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccc
Confidence 2 2345899999999876422222 233333322 46899999999999643
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-16 Score=122.89 Aligned_cols=107 Identities=9% Similarity=0.018 Sum_probs=68.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe--CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
...+|+++|.+|+|||||+|+|++.. .....+..+.......... ...+.+|||||... . .+
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~----~~ 69 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGS-YQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----------A----KF 69 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSC-CCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----------H----HH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC-CCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----------h----HH
Confidence 34799999999999999999999873 2222333332221111111 24578999999743 1 12
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh------cCCcEEEEeecCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTV 216 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~------~~~p~i~v~nK~D~~ 216 (243)
+.. +|++++|+|.+.+.+... ..+++++.. .+.|+++|+||+|+.
T Consensus 70 ~~~---~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 70 SGW---ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp HHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred HHh---CCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 222 899999999876422222 223333332 368999999999994
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.7e-17 Score=128.89 Aligned_cols=113 Identities=14% Similarity=0.075 Sum_probs=71.1
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EE---eCCcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FK---LGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
...++|+++|.+|+|||||+|+|++... ...+.+++..... .. .+..+.+|||||...... +
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~ 88 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEF---SEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSI----------L 88 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCC---CSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCC----------C
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCC---CCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHH----------H
Confidence 4567999999999999999999998732 2333333332211 11 245678999999654211 1
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
...++ ..+|++++|+|++...+... ..++..+.. .+.|+++|+||+|+...
T Consensus 89 ~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 3oes_A 89 PYSFI---IGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144 (201)
T ss_dssp CGGGT---TTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGG
T ss_pred HHHHH---hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccc
Confidence 11222 33899999999875421111 233343432 26899999999998754
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.8e-16 Score=126.13 Aligned_cols=113 Identities=19% Similarity=0.202 Sum_probs=72.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++.. ......+..+.+.. ....+ ..+.+|||||... +..+.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~ 92 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGL--FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER----------FRSIT 92 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS--CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC--CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH----------HHHHH
Confidence 34799999999999999999999873 22222233333332 22222 3689999999632 12222
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
..++ ..+|++++|+|++...+... ..++..+.. .+.|+++|+||+|+...
T Consensus 93 ~~~~---~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~ 146 (201)
T 2ew1_A 93 QSYY---RSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 146 (201)
T ss_dssp GGGS---TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHH---hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 2333 34999999999876422211 234444433 36899999999999743
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-16 Score=125.31 Aligned_cols=114 Identities=11% Similarity=0.053 Sum_probs=72.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE-EEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~-~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.++|+++|.+|+|||||+|+|++... . ....+.++.+. ..... ...+.+|||||.... ..+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~ 92 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQF-P-EVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY----------DRLRPL 92 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-C-SSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGG----------TTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcC-C-cccCCcccceEEEEEEECCEEEEEEEEECCCchhH----------HHHHHH
Confidence 46899999999999999999998732 1 11122222221 11222 236889999996431 111112
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHhc--CCcEEEEeecCCCCChHH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~D~~~~~~ 220 (243)
+ ...+|++++|+|.+....... ..++..+... +.|+++|+||+|+.....
T Consensus 93 ~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 146 (201)
T 2gco_A 93 S---YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 146 (201)
T ss_dssp G---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHH
T ss_pred h---cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCcc
Confidence 2 234899999999876322222 3455555554 799999999999987643
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4e-16 Score=120.59 Aligned_cols=135 Identities=13% Similarity=0.042 Sum_probs=72.3
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.++|+++|.+|+|||||+|+|++... ..... +.++.+... ... ...+.+|||||...... .+..
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~ 70 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQG-DHAHE-MENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGG---------WLQD 70 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEETTEEEEEEEECCCCC-----------------C
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccC-ccccc-CCCcCCeeeEEEEECCeEEEEEEEECCCccccch---------hhhh
Confidence 36899999999999999999987631 22222 222222211 112 34678999999754110 0111
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCcccc
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 241 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~p 241 (243)
.++.. +|++++|+|.+...+... ..++..+.. .+.|+++|+||+|+....... .+...+.....+..+++
T Consensus 71 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~ 145 (169)
T 3q85_A 71 HCLQT---GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS--LEEGRHLAGTLSCKHIE 145 (169)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSC--HHHHHHHHHHTTCEEEE
T ss_pred hhhcc---CCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCC--HHHHHHHHHHcCCcEEE
Confidence 22222 899999999876321111 233333332 268999999999997432221 12233333444555555
Q ss_pred C
Q 026112 242 V 242 (243)
Q Consensus 242 i 242 (243)
+
T Consensus 146 ~ 146 (169)
T 3q85_A 146 T 146 (169)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.2e-17 Score=130.66 Aligned_cols=138 Identities=16% Similarity=0.154 Sum_probs=78.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++........+..+++........+ ..+.+|||||..... .+...
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~ 81 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYR----------AITSA 81 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTT----------CCCGG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchh----------hhHHH
Confidence 35799999999999999999999873211122222322222222233 478999999964321 11112
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi~ 243 (243)
++ ..+|++++|+|++.+.+... ..++..+... +.|+++|+||+|+....... .+.+.+.....+..+++++
T Consensus 82 ~~---~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~~~~~~~~~~~S 156 (223)
T 3cpj_B 82 YY---RGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVP--TEESKTFAQENQLLFTETS 156 (223)
T ss_dssp GT---TTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSC--HHHHHHHHHHTTCEEEECC
T ss_pred Hh---ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccC--HHHHHHHHHHcCCEEEEEe
Confidence 22 34899999999876422222 2344444433 68999999999997532211 1122333344455555553
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.8e-16 Score=124.76 Aligned_cols=111 Identities=18% Similarity=0.190 Sum_probs=72.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
..+|+++|.+|+|||||+|+|++. ......+..+.+.. .+...+..+.++||||..... .+...++
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~~-- 88 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND-RLATLQPTWHPTSE-ELAIGNIKFTTFDLGGHIQAR----------RLWKDYF-- 88 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS-CCCCCCCCCSCEEE-EEEETTEEEEEEECCCSGGGT----------TSGGGGC--
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC-CCCccccCCCCCeE-EEEECCEEEEEEECCCCHHHH----------HHHHHHH--
Confidence 469999999999999999999987 33444444444322 222236789999999975311 1111222
Q ss_pred ccCccEEEEEEeCCCCCChhh-HHHHHHHH----hcCCcEEEEeecCCCCC
Q 026112 172 RVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~ 217 (243)
..+|++++|+|++.+.+... ..++..+. ..+.|+++|+||+|+..
T Consensus 89 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 89 -PEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp -TTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred -hcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 34899999999886532222 22333332 24789999999999975
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.65 E-value=7.6e-16 Score=122.50 Aligned_cols=111 Identities=14% Similarity=0.073 Sum_probs=70.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEE-E-EEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I-NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~-~-~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++... ...+.+++.+ . ..... +..+.+|||||... . ...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---~--------~~~ 92 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRF---IWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED---T--------IQR 92 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCC---CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC---C--------HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC---CcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc---c--------cch
Confidence 457999999999999999999998732 2222222221 1 11222 34688999999754 1 112
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
..++.. +|++++|+|++...+... ..++..+.. .+.|+++|+||+|+...
T Consensus 93 ~~~~~~---~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~ 147 (196)
T 2atv_A 93 EGHMRW---GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS 147 (196)
T ss_dssp HHHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGG
T ss_pred hhhhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccc
Confidence 223332 899999999876322111 233333332 47899999999999753
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-16 Score=137.03 Aligned_cols=124 Identities=23% Similarity=0.304 Sum_probs=81.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceE-----------------------------------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ----------------------------------------- 129 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~----------------------------------------- 129 (243)
..|.|+++|.+|||||||+|+|++.. ....+.. .+|+
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~-~lp~~~~-~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKD-FLPRGSG-IVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDE 110 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSC-CSCCCSS-SCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCC-cCCCCCC-cccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHH
Confidence 56899999999999999999999963 1111110 0110
Q ss_pred -------------E---EEEE-EeCCcEEEEeCCCCCCCcc---chHHHHHHHHHHHHHHhcccCccEEEEEEeCCC-CC
Q 026112 130 -------------T---INFF-KLGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-GV 188 (243)
Q Consensus 130 -------------~---~~~~-~~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~-~~ 188 (243)
+ +... .....+.+|||||+..... .......+..+...|+.. +|++++|+|+.. ..
T Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~---~d~iilvv~~~~~~~ 187 (360)
T 3t34_A 111 TDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEK---PNCIILAISPANQDL 187 (360)
T ss_dssp HHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHS---SSEEEEEEEETTSCG
T ss_pred HHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhc---CCeEEEEeecccCCc
Confidence 0 0111 1145799999999876421 233445566677777665 899999998643 22
Q ss_pred -ChhhHHHHHHHHhcCCcEEEEeecCCCCChH
Q 026112 189 -KPRDHELISLMERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 189 -~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~ 219 (243)
......+++.+...+.|+++|+||+|+..+.
T Consensus 188 ~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~ 219 (360)
T 3t34_A 188 ATSDAIKISREVDPSGDRTFGVLTKIDLMDKG 219 (360)
T ss_dssp GGCHHHHHHHHSCTTCTTEEEEEECGGGCCTT
T ss_pred CCHHHHHHHHHhcccCCCEEEEEeCCccCCCc
Confidence 2223455555556678999999999998654
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.4e-16 Score=125.20 Aligned_cols=115 Identities=15% Similarity=0.120 Sum_probs=68.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++........+..+.+........+ ..+.+|||||... +......
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~~~ 93 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER----------FRSVTRS 93 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHH----------HSCCCHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHh----------HHHHHHH
Confidence 35799999999999999999999873211111222222222222222 4789999999521 1112223
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
++. .+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+...
T Consensus 94 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 145 (200)
T 2o52_A 94 YYR---GAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145 (200)
T ss_dssp HHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGG
T ss_pred Hhc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 333 3899999999876422222 234444432 36899999999999643
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.6e-16 Score=141.94 Aligned_cols=129 Identities=22% Similarity=0.257 Sum_probs=89.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccc--------------ccc------CCCCceEE---EEEEEeCCcEEEEeCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVV--------------RTS------DKPGLTQT---INFFKLGTKLCLVDLPGY 148 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~--------------~vs------~~~gtT~~---~~~~~~~~~~~liDTpG~ 148 (243)
.++|+|+|.+|+|||||+|+|+...... .+. ..+|+|.. ..+...+..+.+|||||+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 4699999999999999999997321100 000 01233332 233334678999999998
Q ss_pred CCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHH
Q 026112 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI 228 (243)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l 228 (243)
.+.. .....++ ..+|++++|+|+..+.......++..+...++|+++|+||+|+.... ..+..+.+
T Consensus 93 ~df~----------~~~~~~l---~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~-~~~~l~ei 158 (528)
T 3tr5_A 93 ADFT----------EDTYRTL---TAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRP-SIELLDEI 158 (528)
T ss_dssp TTCC----------HHHHHGG---GGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSC-HHHHHHHH
T ss_pred hhHH----------HHHHHHH---HhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc-HHHHHHHH
Confidence 6521 1122233 34999999999999888888888888888899999999999997543 34445666
Q ss_pred HHHHhh
Q 026112 229 EESLKA 234 (243)
Q Consensus 229 ~~~l~~ 234 (243)
++.++.
T Consensus 159 ~~~l~~ 164 (528)
T 3tr5_A 159 ESILRI 164 (528)
T ss_dssp HHHHCC
T ss_pred HHhhCC
Confidence 766654
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-16 Score=126.02 Aligned_cols=112 Identities=15% Similarity=0.078 Sum_probs=70.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++... .....+.++.+.. .... + ..+.+|||||..... .+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~ 74 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKF--SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQ----------SLG 74 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCC--CSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGS----------CSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHH----------HhH
Confidence 457999999999999999999998732 1222233333332 2222 2 368999999964311 111
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh-------cCCcEEEEeecCCCCC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-------~~~p~i~v~nK~D~~~ 217 (243)
..++ ..+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+..
T Consensus 75 ~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (207)
T 1vg8_A 75 VAFY---RGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN 131 (207)
T ss_dssp CGGG---TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred HHHH---hCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc
Confidence 1222 34899999999876422222 233333321 3689999999999974
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.3e-16 Score=125.81 Aligned_cols=113 Identities=11% Similarity=-0.000 Sum_probs=70.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceE-EE-EEEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TI-NFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~-~~-~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.++|+++|.+|+|||||+|+|++... . ..+.+++. .. .....+ ..+.+|||||..... .+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~-~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~ 91 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEF-P--EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD----------RLRP 91 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC-C---------CCEEEEEEEETTEEEEEEEEECTTCTTCT----------TTGG
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCC-C--CcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHH----------HHHH
Confidence 36999999999999999999998732 2 22222221 11 112222 468899999975421 1111
Q ss_pred HHHhcccCccEEEEEEeCCCCCC--hhhHHHHHHHHhc--CCcEEEEeecCCCCChHH
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVK--PRDHELISLMERS--QTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~--~~~~~~~~~l~~~--~~p~i~v~nK~D~~~~~~ 220 (243)
.+ ...+|++++|+|.+.... .....++..+... +.|+++|+||+|+.....
T Consensus 92 ~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 146 (207)
T 2fv8_A 92 LS---YPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 146 (207)
T ss_dssp GG---CTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHH
T ss_pred hh---cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhcccc
Confidence 12 234899999999875321 1213455555554 789999999999976543
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=7.1e-17 Score=126.71 Aligned_cols=112 Identities=18% Similarity=0.216 Sum_probs=53.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.++|+++|.+|+|||||+|+|++.. ......+.++.+... ... + ..+.+|||||... +.....
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~ 75 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDA--FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTITT 75 (183)
T ss_dssp EEEEEEECCCCC------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-------------------CC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChh----------hhhhHH
Confidence 4799999999999999999999763 222222333444322 222 2 5789999999642 111222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
.+ ...+|++++|+|++.+.+... ..++..+.. .+.|+++|+||+|+...
T Consensus 76 ~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (183)
T 2fu5_C 76 AY---YRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128 (183)
T ss_dssp TT---TTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSC
T ss_pred HH---HhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCcc
Confidence 22 234899999999886422111 234444443 26899999999999753
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.2e-16 Score=124.36 Aligned_cols=115 Identities=16% Similarity=0.120 Sum_probs=71.0
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE---EEEEeC--CcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~---~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
...++|+++|.+|||||||+|+|++... .....++++.+. .+...+ ..+.+|||||.... . ..+
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~---~------~~~ 89 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQG--DSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDA---G------GWL 89 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEEC--CGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGG---G------HHH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccC--CccCCCCcccceEEEEEEECCEEEEEEEEecCCCccc---h------hhh
Confidence 3457999999999999999999986522 122233333322 111122 35778999997431 1 012
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChh-hHHHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
...++.. +|++++|+|.+...+.. -..++..+.. .+.|+++|+||+|+...
T Consensus 90 ~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 145 (195)
T 3cbq_A 90 RDHCLQT---GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS 145 (195)
T ss_dssp HHHHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTT
T ss_pred HHHhhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcccc
Confidence 2233332 89999999987542211 1234444433 36899999999999753
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=8.8e-16 Score=123.95 Aligned_cols=111 Identities=16% Similarity=0.090 Sum_probs=69.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--E-Ee------------CCcEEEEeCCCCCCCccch
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--F-KL------------GTKLCLVDLPGYGFAYAKE 155 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~-~~------------~~~~~liDTpG~~~~~~~~ 155 (243)
..++|+++|.+|+|||||+|+|++... .....+.++.+... . .. ...+.+|||||..
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~------ 95 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKF--NPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE------ 95 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCC--CCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH------
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCC--CcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH------
Confidence 357999999999999999999998731 11111111112111 1 11 3468999999942
Q ss_pred HHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHh-------cCCcEEEEeecCCCCCh
Q 026112 156 EVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-------SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~-------~~~p~i~v~nK~D~~~~ 218 (243)
.+......++.. +|++++|+|++... ....+..++.. .+.|+++|+||+|+...
T Consensus 96 ----~~~~~~~~~~~~---~d~iilV~D~~~~~--s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~ 156 (217)
T 2f7s_A 96 ----RFRSLTTAFFRD---AMGFLLMFDLTSQQ--SFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ 156 (217)
T ss_dssp ----HHHHHHHHHHTT---CCEEEEEEETTCHH--HHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGG
T ss_pred ----hHHhHHHHHhcC---CCEEEEEEECcCHH--HHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccc
Confidence 123334444443 89999999987642 22223333332 36899999999999753
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.8e-16 Score=143.52 Aligned_cols=111 Identities=23% Similarity=0.359 Sum_probs=79.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCC-CceEEE--EEEEe-------------------CCcEEEEeCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTI--NFFKL-------------------GTKLCLVDLPGY 148 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~-gtT~~~--~~~~~-------------------~~~~~liDTpG~ 148 (243)
+.|+|+++|++|+|||||+|+|++.. .....+ |+|.+. .+... ...+.+|||||+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~---v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGh 80 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSA---VASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGH 80 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHH---HSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTT
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccc---CccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCc
Confidence 45899999999999999999999862 122222 444432 22110 114899999998
Q ss_pred CCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
.+... +.. +....+|++++|+|+++++..+..+.+..+...++|+++|+||+|+..
T Consensus 81 e~F~~----------~~~---r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 81 EAFTT----------LRK---RGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIH 136 (594)
T ss_dssp SCCTT----------SBC---SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGST
T ss_pred HHHHH----------HHH---HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEeccccccc
Confidence 54211 111 123448999999999999888888888888888999999999999964
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.2e-16 Score=123.16 Aligned_cols=106 Identities=12% Similarity=0.079 Sum_probs=69.2
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE-EEEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~-~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
....+|+++|.+|||||||+|++++... . ..+..|..+. ..... + ..+.+|||||... +.
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~-~--~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~--- 81 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTY-V--QEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPE----------LQ--- 81 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSC-C--CCCCTTCEEEEEEEEETTEEEEEEEEECSSSCC----------HH---
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCC-C--CCcCCCcceEEEEEEECCEEEEEEEEECCCChh----------hh---
Confidence 3567999999999999999999998732 1 1122222211 11112 2 4577899999753 11
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTV 216 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~ 216 (243)
++.. +|++++|+|.+...+... ..++..+.. .+.|+++|+||+|+.
T Consensus 82 --~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 82 --FAAW---VDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp --HHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred --eecC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 2222 899999999886432222 345555544 367999999999994
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.5e-16 Score=125.87 Aligned_cols=114 Identities=18% Similarity=0.031 Sum_probs=73.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+++|++... ...+.+|+.+... ... + ..+.+|||||..... .+.
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~ 74 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF---PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYS----------RLR 74 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC---CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCC----------C--
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC---CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHH----------HHH
Confidence 457999999999999999999998731 2333333332211 112 2 378999999975421 111
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHhc--CCcEEEEeecCCCCChHH
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~D~~~~~~ 220 (243)
..++ ..+|++++|+|.+.+.+... ..++..+... +.|+++|+||+|+.....
T Consensus 75 ~~~~---~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 130 (212)
T 2j0v_A 75 PLSY---RGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKG 130 (212)
T ss_dssp CGGG---TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHH
T ss_pred Hhhc---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcc
Confidence 2222 33899999999876422222 2455555544 789999999999976543
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=7e-16 Score=122.98 Aligned_cols=113 Identities=14% Similarity=0.037 Sum_probs=70.2
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe-C--CcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
...++|+++|.+|+|||||+|+|++.. ....+.+|+.+... ... + ..+.+|||||...... +
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~ 84 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNG---YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDK----------L 84 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC-----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSS----------S
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHH----------H
Confidence 356799999999999999999999873 33444555543321 122 3 3577999999754211 1
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhhH--HHHHHHHhc--CCcEEEEeecCCCCCh
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~~--~~p~i~v~nK~D~~~~ 218 (243)
...++ ..+|++++|+|++...+.... .++..+... +.|+++|+||+|+...
T Consensus 85 ~~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 85 RPLCY---TNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRED 139 (201)
T ss_dssp GGGGG---TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGC
T ss_pred hHhhc---CCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhc
Confidence 11222 338999999998764322222 355555443 7899999999999753
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-16 Score=126.98 Aligned_cols=112 Identities=15% Similarity=0.105 Sum_probs=72.6
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe---CCcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
...++|+++|.+|+|||||+|+|++.. ....+.+|+.+... ... ...+.+|||||.... ..+
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~ 91 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDC---YPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY----------DNV 91 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSC---CCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGG----------TTT
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCC---CCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhH----------HHH
Confidence 346799999999999999999999873 22333333322211 111 346889999996431 112
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHhc--CCcEEEEeecCCCCC
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVF 217 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~D~~~ 217 (243)
...++ ..+|++++|+|++...+... ..++..+... +.|+++|+||+|+..
T Consensus 92 ~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 92 RPLCY---SDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp GGGGC---TTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred HHHHc---CCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 22222 34899999999886532222 3455556554 789999999999965
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-16 Score=124.76 Aligned_cols=114 Identities=16% Similarity=-0.014 Sum_probs=67.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE-----EEEeCCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~-----~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|++++.. ....+.+|+.+.. .......+.+|||||..... ...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~ 73 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNT---FPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYN----------RLR 73 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSC---CC----------CBCCCC-------CEEECCCC-CTTT----------TTG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC---CCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhh----------hhH
Confidence 45799999999999999999999873 2233334433211 11123456799999964311 111
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhH--HHHHHHHhc--CCcEEEEeecCCCCChHH
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~~--~~p~i~v~nK~D~~~~~~ 220 (243)
..++ ..+|++++|+|++.+.+.... .++..+... +.|+++|+||+|+.....
T Consensus 74 ~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 129 (182)
T 3bwd_D 74 PLSY---RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQ 129 (182)
T ss_dssp GGGG---TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHH
T ss_pred Hhhc---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcc
Confidence 2222 348999999998764222222 355555543 789999999999976543
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-15 Score=144.88 Aligned_cols=141 Identities=19% Similarity=0.230 Sum_probs=94.0
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccccc---c-----------cccCCCCceEEEE---EEEeCCcEEEEeCCCCCCCc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV---V-----------RTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAY 152 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~---~-----------~vs~~~gtT~~~~---~~~~~~~~~liDTpG~~~~~ 152 (243)
...++|+++|.+|+|||||+++|++.... . ......|+|.+.. +...+..+.+|||||+.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe--- 370 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA--- 370 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH---
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH---
Confidence 35579999999999999999999974100 0 0112456666542 22235789999999963
Q ss_pred cchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCChHH-HHHHHHHHHH
Q 026112 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPID-VARRAMQIEE 230 (243)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~~~-~~~~~~~l~~ 230 (243)
.+..........+|++++|+|+.++...+..+++..+...++| +++|+||+|+....+ .....+.+++
T Consensus 371 ----------dF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~e 440 (1289)
T 3avx_A 371 ----------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRE 440 (1289)
T ss_dssp ----------HHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHH
Confidence 2334444455669999999999988777888888888888999 799999999986433 3334455666
Q ss_pred HHhhCC-----CccccCC
Q 026112 231 SLKANN-----SLVQPVV 243 (243)
Q Consensus 231 ~l~~~~-----~~~~pi~ 243 (243)
.+...+ .+++|+|
T Consensus 441 lLk~~G~~~~~vp~IpvS 458 (1289)
T 3avx_A 441 LLSQYDFPGDDTPIVRGS 458 (1289)
T ss_dssp HHHHTTSCTTTCCEEECC
T ss_pred HHHhccccccceeEEEEE
Confidence 665544 3455654
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.1e-16 Score=124.63 Aligned_cols=111 Identities=18% Similarity=0.221 Sum_probs=68.3
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
..+|+++|.+|||||||+|+|++. ......+..+.+.. .+...+..+.+|||||..... .+...++.
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~l~i~Dt~G~~~~~----------~~~~~~~~- 91 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDD-RLGQHVPTLHPTSE-ELTIAGMTFTTFDLGGHIQAR----------RVWKNYLP- 91 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE-EEEETTEEEEEEEECC----C----------CGGGGGGG-
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC-CCCccCCCCCceeE-EEEECCEEEEEEECCCcHhhH----------HHHHHHHh-
Confidence 468999999999999999999987 33333344444322 122235689999999964311 11222332
Q ss_pred ccCccEEEEEEeCCCCCChhh-HHHHHHH-H---hcCCcEEEEeecCCCCC
Q 026112 172 RVSLKRVCLLIDTKWGVKPRD-HELISLM-E---RSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~-~~~~~~l-~---~~~~p~i~v~nK~D~~~ 217 (243)
.+|++++|+|++.+.+... ..++..+ . ..+.|+++|+||+|+..
T Consensus 92 --~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 92 --AINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp --GCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred --cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 3899999999876422221 2233333 2 24789999999999975
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-17 Score=143.63 Aligned_cols=139 Identities=15% Similarity=0.215 Sum_probs=94.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc-----ccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccc-hHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK-EEVKDAWEELV 165 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~-----~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~~~~ 165 (243)
..+|+++|.+|+|||||+|+|++.. ....++..+|||++...+..+..+.++||||+.+.... +.+. ....
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~---~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVG---KQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSC---HHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhh---HHHH
Confidence 3589999999999999999999862 24557899999999988887777999999999764311 1111 1112
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhh
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~ 234 (243)
.+.......+.+++++|+...........++.+...+.|+++|+||+|.....+.....+.+++.++.
T Consensus 237 -~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~ 304 (368)
T 3h2y_A 237 -KLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAGD 304 (368)
T ss_dssp -HHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTT
T ss_pred -HHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccccHHHHHHHHHHHhCC
Confidence 22222355888999998743211122222344455678999999999999887777777777777654
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.4e-15 Score=131.44 Aligned_cols=151 Identities=19% Similarity=0.272 Sum_probs=98.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccc--cccccCCCCceEEEE-EEEe--C--CcEEEEeCCCCCCCccch----H---
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWG--VVRTSDKPGLTQTIN-FFKL--G--TKLCLVDLPGYGFAYAKE----E--- 156 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~--~~~vs~~~gtT~~~~-~~~~--~--~~~~liDTpG~~~~~~~~----~--- 156 (243)
..++++|+|++|+|||||+|.|+|..- .......++.++... +... + ..+.++|+||++...... .
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence 345699999999999999999999731 011122344454422 1111 1 268999999997642211 1
Q ss_pred -HHHHHHHHHHHHHhcc------cCc--c-EEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHH
Q 026112 157 -VKDAWEELVKEYVSTR------VSL--K-RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAM 226 (243)
Q Consensus 157 -~~~~~~~~~~~~~~~~------~~~--d-~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~ 226 (243)
+...+..++..+.... .++ | ++++++|+.+++...+.++++.+. .+.|+++|+||+|.+.+.+......
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l~~ 199 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAISKSELTKFKI 199 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccchHHHHHHHH
Confidence 1223333333332111 122 3 467788888889999999988887 6899999999999999999999889
Q ss_pred HHHHHHhhCCCccccC
Q 026112 227 QIEESLKANNSLVQPV 242 (243)
Q Consensus 227 ~l~~~l~~~~~~~~pi 242 (243)
.+++.+...+..++.|
T Consensus 200 ~I~~~L~~~gi~I~~i 215 (427)
T 2qag_B 200 KITSELVSNGVQIYQF 215 (427)
T ss_dssp HHHHHHBTTBCCCCCC
T ss_pred HHHHHHHHcCCcEEec
Confidence 9998888888777655
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.8e-16 Score=123.56 Aligned_cols=110 Identities=12% Similarity=0.052 Sum_probs=70.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
...+|+++|.+|+|||||+|+|++.. ....+.+|+.+.. .... ...+.+|||||...... +
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~- 85 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKR---FISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN----------C- 85 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC----------T-
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCC---CCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh----------H-
Confidence 45799999999999999999999873 2344444443321 1112 34688999999643211 1
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh------cCCcEEEEeecCCCCC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~------~~~p~i~v~nK~D~~~ 217 (243)
..++.. +|++++|+|.+...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 86 ~~~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 141 (187)
T 3c5c_A 86 ERYLNW---AHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141 (187)
T ss_dssp HHHHTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred HHHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence 223333 899999999875322221 234444433 3789999999999964
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.62 E-value=6.8e-16 Score=139.15 Aligned_cols=132 Identities=19% Similarity=0.193 Sum_probs=78.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccc-----------------------ccccC------CCCceEEEEEE---EeCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-----------------------VRTSD------KPGLTQTINFF---KLGT 138 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~-----------------------~~vs~------~~gtT~~~~~~---~~~~ 138 (243)
..++|+++|.+|+|||||+++|+..... +.+.+ ..|+|.++... ..+.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~ 121 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 121 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence 3469999999999999999999753110 00111 34666665422 2356
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCC-------ChhhHHHHHHHHhcCCc-EEEEe
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDHELISLMERSQTK-YQVVL 210 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-------~~~~~~~~~~l~~~~~p-~i~v~ 210 (243)
.+.+|||||+.+ +..........+|++++|+|+..+. ..+..+.+..+...++| +++|+
T Consensus 122 ~~~iiDtPGh~~-------------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivvi 188 (467)
T 1r5b_A 122 RFSLLDAPGHKG-------------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVI 188 (467)
T ss_dssp EEEECCCCC------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEE
T ss_pred EEEEEECCCcHH-------------HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEE
Confidence 799999999743 2223333345599999999998763 13455666667777888 99999
Q ss_pred ecCCCCC----hHHHHHHHHHHHHHHhhC
Q 026112 211 TKTDTVF----PIDVARRAMQIEESLKAN 235 (243)
Q Consensus 211 nK~D~~~----~~~~~~~~~~l~~~l~~~ 235 (243)
||+|+.. ...+....+.+++.+...
T Consensus 189 NK~Dl~~~~~~~~~~~~i~~e~~~~l~~~ 217 (467)
T 1r5b_A 189 NKMDEPSVQWSEERYKECVDKLSMFLRRV 217 (467)
T ss_dssp ECTTSTTCSSCHHHHHHHHHHHHHHHHHH
T ss_pred ECccCCCccccHHHHHHHHHHHHHHHHHh
Confidence 9999964 333445555566655543
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.62 E-value=8.7e-16 Score=120.32 Aligned_cols=113 Identities=20% Similarity=0.144 Sum_probs=72.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
..++|+++|.+|+|||||+|+|++. ......+..+.+.... ...+..+.+|||||..... .....+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~-~~~~~~~t~~~~~~~~-~~~~~~~~i~Dt~G~~~~~----------~~~~~~-- 82 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG-EVVTTKPTIGFNVETL-SYKNLKLNVWDLGGQTSIR----------PYWRCY-- 82 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS-EEEEECSSTTCCEEEE-EETTEEEEEEEEC----CC----------TTGGGT--
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC-CcCccCCcCccceEEE-EECCEEEEEEECCCCHhHH----------HHHHHH--
Confidence 4679999999999999999999976 3344455555433221 2236789999999975311 111122
Q ss_pred cccCccEEEEEEeCCCCCChhh-HHHHHHHH----hcCCcEEEEeecCCCCCh
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~~ 218 (243)
...+|++++|+|++.+.+... ..++..+. ..+.|+++|+||+|+...
T Consensus 83 -~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 83 -YADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp -TTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred -hccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 234899999999876533222 23333332 246899999999999764
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.9e-17 Score=148.15 Aligned_cols=112 Identities=22% Similarity=0.319 Sum_probs=87.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE----eCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
+.|+|+++|.+|+|||||+|+|++.. ......+|+|.++..+. .+..+.+|||||+.... .+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~--~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~----------~~-- 68 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQ--VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFS----------AM-- 68 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHH--HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTT----------TS--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC--cccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHH----------HH--
Confidence 46899999999999999999999873 33446678888764432 25579999999975411 11
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
.......+|++++|+|+..+..++..+.+..+...++|+++|+||+|+..
T Consensus 69 -~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~ 118 (537)
T 3izy_P 69 -RARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAE 118 (537)
T ss_dssp -BBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTT
T ss_pred -HHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccc
Confidence 11223448999999999999889998999999889999999999999974
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=3.9e-16 Score=126.58 Aligned_cols=115 Identities=13% Similarity=0.047 Sum_probs=79.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+++.........+..|+|........ +..+.+|||||..... .+...
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~ 83 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFG----------GLRDG 83 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTS----------CCCHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHh----------HHHHH
Confidence 4579999999999999999996654234556778888887765543 3578999999964311 11222
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc--CCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~--~~p~i~v~nK~D~~~~ 218 (243)
++. .+|++++|+|++...+... ..++..+... +.|+++|+||+|+...
T Consensus 84 ~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 84 YYI---QAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 134 (221)
T ss_dssp HHT---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSC
T ss_pred HHh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccc
Confidence 333 3899999999886422222 2344444332 7899999999999753
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.2e-15 Score=116.61 Aligned_cols=116 Identities=12% Similarity=0.087 Sum_probs=69.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCC-ceEEEEEEE--------eCCcEEEEeCCCCCCCccchHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINFFK--------LGTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~g-tT~~~~~~~--------~~~~~~liDTpG~~~~~~~~~~~~~~~~ 163 (243)
.+|+++|.+|||||||+|+|++... .....+.+ +..+..... ....+.+|||||... +..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~-~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~ 71 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKK-SDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE----------FYS 71 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC------------CSEEEEEEEC---------CEEEEEEECSHHH----------HHT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-ccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHH----------HHH
Confidence 6899999999999999999998521 22222222 223322211 245789999999532 122
Q ss_pred HHHHHHhcccCccEEEEEEeCCCCCCh--hhHHHHHHHHh--cCCcEEEEeecCCCCChHHHH
Q 026112 164 LVKEYVSTRVSLKRVCLLIDTKWGVKP--RDHELISLMER--SQTKYQVVLTKTDTVFPIDVA 222 (243)
Q Consensus 164 ~~~~~~~~~~~~d~v~~vvd~~~~~~~--~~~~~~~~l~~--~~~p~i~v~nK~D~~~~~~~~ 222 (243)
+...++.. ++++++|+|.+.+... .-..++..+.. .+.|+++|.||+|+.......
T Consensus 72 ~~~~~~~~---~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~ 131 (184)
T 2zej_A 72 THPHFMTQ---RALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRK 131 (184)
T ss_dssp TSHHHHHH---SEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHH
T ss_pred hhHHHccC---CcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhH
Confidence 22333333 7899999998764211 11234443332 268999999999998765543
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-16 Score=142.46 Aligned_cols=112 Identities=22% Similarity=0.295 Sum_probs=85.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
+.|+|+++|++|+|||||+++|++.. ......+|+|.+...+. .+..+.+|||||+..... .
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~--v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~-------------~ 67 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK--VASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTS-------------M 67 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH--HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTT-------------S
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC--CccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHH-------------H
Confidence 56899999999999999999999862 22344466776654332 256899999999754211 1
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
.......+|++++|+|+.++..++..+.+..+...++|+++|+||+|+..
T Consensus 68 ~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 68 RARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPE 117 (501)
T ss_dssp BCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSST
T ss_pred HHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccc
Confidence 12234458999999999988778888888888888999999999999975
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-15 Score=143.17 Aligned_cols=131 Identities=18% Similarity=0.212 Sum_probs=89.2
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccc----------cccC------CCCceEEEE---EEEeCCcEEEEeCCCCCC
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV----------RTSD------KPGLTQTIN---FFKLGTKLCLVDLPGYGF 150 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~----------~vs~------~~gtT~~~~---~~~~~~~~~liDTpG~~~ 150 (243)
...++|+++|.+|+|||||+|+|+...... .+.+ .+++|.... +...+..+.+|||||+.+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 456799999999999999999999531100 0111 234444332 222367899999999865
Q ss_pred CccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHH
Q 026112 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (243)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~ 230 (243)
.. . ....++.. +|++++|+|+..+....+..++..+...+.|+++|+||+|+... +.....+.+++
T Consensus 88 f~--~--------~~~~~l~~---aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~-~~~~~~~~l~~ 153 (693)
T 2xex_A 88 FT--V--------EVERSLRV---LDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA-NFEYSVSTLHD 153 (693)
T ss_dssp CC--H--------HHHHHHHH---CSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC-CHHHHHHHHHH
T ss_pred hH--H--------HHHHHHHH---CCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc-chHHHHHHHHH
Confidence 21 1 12222222 99999999999888888888888888889999999999999864 35556667777
Q ss_pred HHhh
Q 026112 231 SLKA 234 (243)
Q Consensus 231 ~l~~ 234 (243)
.+..
T Consensus 154 ~l~~ 157 (693)
T 2xex_A 154 RLQA 157 (693)
T ss_dssp HHCC
T ss_pred HhCC
Confidence 7654
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-15 Score=138.53 Aligned_cols=130 Identities=18% Similarity=0.167 Sum_probs=79.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccc-------ccc------CCCCceEEEE---EEEe-----CCcEEEEeCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-------RTS------DKPGLTQTIN---FFKL-----GTKLCLVDLPGYG 149 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~-------~vs------~~~gtT~~~~---~~~~-----~~~~~liDTpG~~ 149 (243)
...+|+++|.+|+|||||+++|+...... .+. ...|.|.... +.+. +..+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 34689999999999999999998742100 011 1234454422 2111 2468899999985
Q ss_pred CCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHH
Q 026112 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (243)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~ 229 (243)
+. ...+..++.. +|++++|+|+..+...+....+..+...++|+++|+||+|+.... ..+..+.+.
T Consensus 83 dF----------~~ev~~~l~~---aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~-~~~v~~ei~ 148 (599)
T 3cb4_D 83 DF----------SYEVSRSLAA---CEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAAD-PERVAEEIE 148 (599)
T ss_dssp GG----------HHHHHHHHHH---CSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHHH
T ss_pred HH----------HHHHHHHHHH---CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccccc-HHHHHHHHH
Confidence 41 1222333333 899999999998887777776666677789999999999998643 333445555
Q ss_pred HHHhh
Q 026112 230 ESLKA 234 (243)
Q Consensus 230 ~~l~~ 234 (243)
+.++.
T Consensus 149 ~~lg~ 153 (599)
T 3cb4_D 149 DIVGI 153 (599)
T ss_dssp HHTCC
T ss_pred HHhCC
Confidence 55543
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.60 E-value=9.1e-16 Score=120.83 Aligned_cols=111 Identities=16% Similarity=0.145 Sum_probs=70.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEE-EE-EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-IN-FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~-~~-~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++... ...+.+|+.. .. .... ...+.+|||||.... ..+.
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~ 72 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCF---PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY----------DNVR 72 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC---CSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGG----------TTTG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEEECCEEEEEEEEECCCChhh----------hhhH
Confidence 347999999999999999999998732 1222222221 11 1111 246889999996431 1111
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHh--cCCcEEEEeecCCCCC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~p~i~v~nK~D~~~ 217 (243)
..+ ...+|++++|+|.+...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 73 ~~~---~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 73 PLS---YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp GGG---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred Hhh---cCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 112 234899999999876422222 234444544 2689999999999974
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.3e-15 Score=136.37 Aligned_cols=129 Identities=19% Similarity=0.211 Sum_probs=87.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccc--------------ccc------CCCCceEE---EEEEEeCCcEEEEeCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVV--------------RTS------DKPGLTQT---INFFKLGTKLCLVDLPGY 148 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~--------------~vs------~~~gtT~~---~~~~~~~~~~~liDTpG~ 148 (243)
..+|+++|.+|+|||||+|+|+...... .+. ...|+|.. ..+...+..+.+|||||+
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 3699999999999999999999742100 011 12233322 123334678999999998
Q ss_pred CCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHH
Q 026112 149 GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI 228 (243)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l 228 (243)
.+.. .....++ ..+|++++|+|+..+.......++..+...++|+++|+||+|+..... .+..+.+
T Consensus 93 ~df~----------~~~~~~l---~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~-~~~~~~i 158 (529)
T 2h5e_A 93 EDFS----------EDTYRTL---TAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDP-MELLDEV 158 (529)
T ss_dssp TTCC----------HHHHHGG---GGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCH-HHHHHHH
T ss_pred hhHH----------HHHHHHH---HHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccH-HHHHHHH
Confidence 5421 1122233 349999999999988888888888888888999999999999986532 3456667
Q ss_pred HHHHhh
Q 026112 229 EESLKA 234 (243)
Q Consensus 229 ~~~l~~ 234 (243)
++.++.
T Consensus 159 ~~~l~~ 164 (529)
T 2h5e_A 159 ENELKI 164 (529)
T ss_dssp HHHHCC
T ss_pred HHHhCC
Confidence 776654
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.8e-17 Score=143.14 Aligned_cols=139 Identities=16% Similarity=0.169 Sum_probs=97.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc----cccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccc-hHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK-EEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~----~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~~~~~ 166 (243)
..+|+++|.||+|||||+|+|++. .....+++.+|||++...+..+..+.++||||+...... ..+. ....
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~---~~~l- 237 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVD---ARDL- 237 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGSC---TTTH-
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHHh---HHHH-
Confidence 358999999999999999999986 123668899999999988888878999999999764311 1111 0111
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~ 234 (243)
.++-.....+.+++++++...........++.+...+.|+++++||+|.....+.....+.+++.++.
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~ 305 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLGE 305 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTT
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccccHHHHHHHHHHhcCC
Confidence 22222345899999999843211112222344445578999999999999777777777777777653
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=8.5e-17 Score=128.83 Aligned_cols=114 Identities=14% Similarity=-0.015 Sum_probs=74.1
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE-----EEeCCcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF-----FKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~-----~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
...++|+++|.+|+|||||+|+|++.. ....+.+++.+... ......+.+|||||... +...
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~ 94 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED----------YDRL 94 (204)
Confidence 345799999999999999999999762 22333334433211 11234566999999643 1122
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHhc--CCcEEEEeecCCCCChH
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~D~~~~~ 219 (243)
...++. .+|++++|+|++.+.+... ..++..+... +.|+++|+||+|+....
T Consensus 95 ~~~~~~---~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~ 150 (204)
T 3th5_A 95 RPLSYP---QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150 (204)
Confidence 223332 3899999999876433332 2455555544 78999999999997643
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.1e-15 Score=122.73 Aligned_cols=147 Identities=22% Similarity=0.335 Sum_probs=97.2
Q ss_pred CEEEEecCCCCchhHHHHHHhccccccccc-------CCCCceE--EEEE----EEeCCcEEEEeCCCCCCCccch----
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-------DKPGLTQ--TINF----FKLGTKLCLVDLPGYGFAYAKE---- 155 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs-------~~~gtT~--~~~~----~~~~~~~~liDTpG~~~~~~~~---- 155 (243)
++++++|++|||||||+|.|+|... ...+ +.+.++. .+.+ ......+.++|+||++......
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~-~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQV-SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC-------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 5899999999999999999998631 1111 1111111 1111 1123478999999997642211
Q ss_pred HHHHHHH----HHHHHHHhcc-------cCccEEEEEEeC-CCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHH
Q 026112 156 EVKDAWE----ELVKEYVSTR-------VSLKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR 223 (243)
Q Consensus 156 ~~~~~~~----~~~~~~~~~~-------~~~d~v~~vvd~-~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~ 223 (243)
.+..... ......++.. ..+++.++++|. .+++.+.+.++++.+... .++++|+||+|...+.+...
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt~~e~~~ 160 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMTLEEKSE 160 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCCHHHHHH
Confidence 1222111 1111121111 125778889985 478899999999999877 99999999999999999999
Q ss_pred HHHHHHHHHhhCCCcccc
Q 026112 224 RAMQIEESLKANNSLVQP 241 (243)
Q Consensus 224 ~~~~l~~~l~~~~~~~~p 241 (243)
....+++.+..++..++|
T Consensus 161 ~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 161 FKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHcCccccC
Confidence 999999999999888775
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-14 Score=135.78 Aligned_cols=133 Identities=20% Similarity=0.215 Sum_probs=93.0
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccccc-c---------cccC------CCCceEEEEEE---EeC-------CcEEEE
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV-V---------RTSD------KPGLTQTINFF---KLG-------TKLCLV 143 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~-~---------~vs~------~~gtT~~~~~~---~~~-------~~~~li 143 (243)
...++|+|+|..|+|||||+++|+..... . .+.+ ..|.|...... ..+ ..+.||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 34679999999999999999999753110 0 0111 23455443222 223 789999
Q ss_pred eCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHH
Q 026112 144 DLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR 223 (243)
Q Consensus 144 DTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~ 223 (243)
||||+.+. ......+++. +|++++|+|+..+.......++..+...++|+++|+||+|+... +..+
T Consensus 88 DTPG~~df----------~~~~~~~l~~---aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~-~~~~ 153 (704)
T 2rdo_7 88 DTPGHVDF----------TIEVERSMRV---LDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA-NFLK 153 (704)
T ss_pred eCCCccch----------HHHHHHHHHH---CCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc-cHHH
Confidence 99998541 1222233333 89999999999887777777778787789999999999999764 3566
Q ss_pred HHHHHHHHHhhCC
Q 026112 224 RAMQIEESLKANN 236 (243)
Q Consensus 224 ~~~~l~~~l~~~~ 236 (243)
..+.+++.+....
T Consensus 154 ~~~~l~~~l~~~~ 166 (704)
T 2rdo_7 154 VVNQIKTRLGANP 166 (704)
T ss_pred HHHHHHHHhCCCc
Confidence 7777777776543
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-15 Score=121.49 Aligned_cols=111 Identities=16% Similarity=0.145 Sum_probs=70.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEE-EE-EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-IN-FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~-~~-~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++... ...+..|+.. .. .... ...+.+|||||.... ..+.
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~ 93 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCF---PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY----------DNVR 93 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC---CSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGG----------TTTG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC---CCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhh----------hHHH
Confidence 347999999999999999999998732 1222222221 11 1111 246889999996431 1111
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHh--cCCcEEEEeecCCCCC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~p~i~v~nK~D~~~ 217 (243)
..+ ...+|++++|+|++...+... ..++..+.. .+.|+++|+||+|+..
T Consensus 94 ~~~---~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 94 PLS---YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp GGG---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred Hhh---ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 122 234899999999876422222 234455544 2689999999999974
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.1e-16 Score=132.38 Aligned_cols=111 Identities=17% Similarity=0.228 Sum_probs=70.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|+|||||+|+|++.. . +...+ |.+.... ..+..+.+|||||.... ..+...+
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~-~--~~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~~ 229 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGE-I--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKI----------RPLWRHY 229 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSC-C--EEEEE--ETTEEEEEEEETTEEEEEEECC---------------CCSHHHH
T ss_pred cceEEEECCCCccHHHHHHHHhCCC-C--CCccc--ccceEEEEEecCcEEEEEEECCCCHhH----------HHHHHHH
Confidence 4589999999999999999999873 2 22222 2222222 23567999999995321 1223333
Q ss_pred HhcccCccEEEEEEeCCCCCChh--hHHHHHHHHhc---CCcEEEEeecCCCCChHH
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPR--DHELISLMERS---QTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~--~~~~~~~l~~~---~~p~i~v~nK~D~~~~~~ 220 (243)
+.. +|++++|+|++...... ...+...+... ++|+++|+||+|+.....
T Consensus 230 ~~~---ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~ 283 (329)
T 3o47_A 230 FQN---TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 283 (329)
T ss_dssp HTT---EEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC
T ss_pred hcc---CCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC
Confidence 333 89999999987543322 23344444433 789999999999986543
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-15 Score=138.55 Aligned_cols=128 Identities=24% Similarity=0.260 Sum_probs=80.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccc-------cccC------CCCceEEE---EEEEe-----CCcEEEEeCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-------RTSD------KPGLTQTI---NFFKL-----GTKLCLVDLPGYG 149 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~-------~vs~------~~gtT~~~---~~~~~-----~~~~~liDTpG~~ 149 (243)
..++|+++|++|+|||||+++|+...... .+.+ ..|.|... ...+. +..+.+|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 35699999999999999999998742100 0001 13334321 12111 2468899999985
Q ss_pred CCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHH
Q 026112 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (243)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~ 229 (243)
+. ...+.+++. .+|++++|+|++.+...+....+..+...++|+++|+||+|+.... ..+..+.+.
T Consensus 85 dF----------~~ev~r~l~---~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~-~~~v~~el~ 150 (600)
T 2ywe_A 85 DF----------SYEVSRALA---ACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSAD-VDRVKKQIE 150 (600)
T ss_dssp GG----------HHHHHHHHH---TCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHHH
T ss_pred hH----------HHHHHHHHH---hCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccC-HHHHHHHHH
Confidence 41 122233333 3899999999999888887777777777899999999999997643 333344444
Q ss_pred HHH
Q 026112 230 ESL 232 (243)
Q Consensus 230 ~~l 232 (243)
+.+
T Consensus 151 ~~l 153 (600)
T 2ywe_A 151 EVL 153 (600)
T ss_dssp HTS
T ss_pred Hhh
Confidence 443
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.6e-15 Score=121.24 Aligned_cols=115 Identities=18% Similarity=0.142 Sum_probs=69.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+++++.........+..|.......... ...+.||||+|.... ..+...
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~----------~~l~~~ 81 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERF----------RSLIPS 81 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTC----------GGGHHH
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhh----------hhHHHH
Confidence 3479999999999999999999976321111221121111111122 246789999996431 233445
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH---hcCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~p~i~v~nK~D~~~~ 218 (243)
|++. ++++++|+|.+...+... ..++..+. ..+.|+++|.||+|+...
T Consensus 82 ~~~~---a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~ 133 (216)
T 4dkx_A 82 YIRD---SAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133 (216)
T ss_dssp HHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGG
T ss_pred Hhcc---ccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhc
Confidence 5544 899999999876422222 23444443 236899999999998654
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.58 E-value=6.4e-15 Score=138.52 Aligned_cols=130 Identities=21% Similarity=0.237 Sum_probs=87.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccc----ccc------cC------CCCceEEEE---EEEeCCcEEEEeCCCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV----VRT------SD------KPGLTQTIN---FFKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~----~~v------s~------~~gtT~~~~---~~~~~~~~~liDTpG~~~~ 151 (243)
..++|+++|.+|+|||||+|+|+..... ..+ .+ ..+.|.... +...+..+.+|||||+.+.
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 4579999999999999999999843110 001 11 234444332 2223678999999998541
Q ss_pred ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHH
Q 026112 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES 231 (243)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~ 231 (243)
......++.. +|++++|+|+..+.......++..+...++|+++|+||+|+... +.....+.+++.
T Consensus 91 ----------~~~~~~~l~~---aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~-~~~~~~~~l~~~ 156 (691)
T 1dar_A 91 ----------TIEVERSMRV---LDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA-DLWLVIRTMQER 156 (691)
T ss_dssp ----------HHHHHHHHHH---CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC-CHHHHHHHHHHT
T ss_pred ----------HHHHHHHHHH---CCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC-CHHHHHHHHHHH
Confidence 1122233332 89999999999888888888888888889999999999999864 355556666666
Q ss_pred Hhh
Q 026112 232 LKA 234 (243)
Q Consensus 232 l~~ 234 (243)
+..
T Consensus 157 l~~ 159 (691)
T 1dar_A 157 LGA 159 (691)
T ss_dssp TCC
T ss_pred hCC
Confidence 654
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-16 Score=127.90 Aligned_cols=113 Identities=19% Similarity=0.159 Sum_probs=68.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCce--EEEEEEEeC---CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT--~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|+|++... .....++++ ........+ ..+.+|||||...... ..
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~ 99 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT----------IT 99 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCC--CCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCC----------CS
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC--CCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHH----------HH
Confidence 357999999999999999999998731 112122222 222222222 4689999999643211 11
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCCh
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~~ 218 (243)
..++ ..+|++++|+|++...+... ..++..+... +.|+++|+||+|+...
T Consensus 100 ~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 100 SSYY---RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153 (199)
T ss_dssp CC-----CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--
T ss_pred HHHh---hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCcc
Confidence 1122 23899999999886422222 2344444433 6899999999999754
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-15 Score=131.89 Aligned_cols=87 Identities=23% Similarity=0.226 Sum_probs=56.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE--Ee------------------CCcEEEEeCCCCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KL------------------GTKLCLVDLPGYGFA 151 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~--~~------------------~~~~~liDTpG~~~~ 151 (243)
..+|+++|.||+|||||+|+|++.. ..++++|+||.++... .. +..+.+|||||+...
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~--~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG--IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 3689999999999999999999983 6788899998875421 11 246999999998653
Q ss_pred ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCC
Q 026112 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186 (243)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~ 186 (243)
.... ..+...++...+.+|++++|+|++.
T Consensus 80 a~~~------~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 80 ASKG------EGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHH------GGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cccc------chHHHHHHHHHHhcCeEEEEEecCC
Confidence 2110 1111222223345999999999875
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=128.41 Aligned_cols=150 Identities=20% Similarity=0.262 Sum_probs=88.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccccccc------CCCCceE-EEEEE-----EeCCcEEEEeCCCCCCCccc----
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTS------DKPGLTQ-TINFF-----KLGTKLCLVDLPGYGFAYAK---- 154 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs------~~~gtT~-~~~~~-----~~~~~~~liDTpG~~~~~~~---- 154 (243)
-.++|+|+|++|+|||||+|.|++... ...+ ....++. +...+ .....+.++||||++.....
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~-~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDL-YSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCC-CCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCC-CCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 346899999999999999999999732 1111 0111221 11110 11236889999998753211
Q ss_pred hHHHHHHHHHHHHHHhc--------c--cCccEEEEEEeCC-CCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHH
Q 026112 155 EEVKDAWEELVKEYVST--------R--VSLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR 223 (243)
Q Consensus 155 ~~~~~~~~~~~~~~~~~--------~--~~~d~v~~vvd~~-~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~ 223 (243)
..+.......+..++.. . ..+++++++++++ +++.+.+..+++.+.. ++|+++|+||+|+..+.++..
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~~~ev~~ 187 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQ 187 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCccHHHHHH
Confidence 11111111222233211 1 1244566666665 5788888788888765 799999999999999888877
Q ss_pred HHHHHHHHHhhCCCccccC
Q 026112 224 RAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 224 ~~~~l~~~l~~~~~~~~pi 242 (243)
....+++.+..++..++++
T Consensus 188 ~k~~i~~~~~~~~i~~~~~ 206 (418)
T 2qag_C 188 FKKQIMKEIQEHKIKIYEF 206 (418)
T ss_dssp HHHHHHHHHHHHTCCCCCC
T ss_pred HHHHHHHHHHHcCCeEEeC
Confidence 7788888888777666543
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.55 E-value=4.6e-15 Score=120.13 Aligned_cols=114 Identities=18% Similarity=0.112 Sum_probs=68.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|||||||+|++++.. ...++.++.++.+. ..... + ..+.++||+|... . ...+.
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~-~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~---~------~~~l~ 105 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVH-DSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG---E------NEWLH 105 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCC-CTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH---H------HHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC-CCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcc---h------hhhHH
Confidence 45799999999999999999999752 23334333333222 11122 2 2467899999532 0 11122
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCC
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~ 217 (243)
..| ...++++++|+|.+...+... ..+...+.. .++|+++|+||+|+..
T Consensus 106 ~~~---~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 106 DHC---MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 159 (211)
T ss_dssp HCC---CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG
T ss_pred HHH---HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc
Confidence 222 234899999999875322111 234443432 2689999999999964
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=6.1e-15 Score=126.27 Aligned_cols=113 Identities=16% Similarity=-0.005 Sum_probs=75.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCC--cEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGT--KLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|+|||||+|++++.. ....+.+|+.+..... .+. .+.+|||||..... ...
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~ 220 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD----------RLR 220 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSC---CCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGT----------TTG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCC---CCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhh----------HHH
Confidence 35799999999999999999999872 3444555665543221 233 45599999974311 111
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhhH--HHHHHHHhc--CCcEEEEeecCCCCChH
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~~--~~p~i~v~nK~D~~~~~ 219 (243)
..+ ...+|++++|+|++.+.+..+. .++..+... +.|+++|+||+|+....
T Consensus 221 ~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 275 (332)
T 2wkq_A 221 PLS---YPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 275 (332)
T ss_dssp GGG---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCH
T ss_pred HHh---ccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhccccc
Confidence 122 2348999999998864332222 345555544 78999999999997543
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.2e-15 Score=128.62 Aligned_cols=123 Identities=20% Similarity=0.236 Sum_probs=69.6
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccc-----cccc-------------------------------ccCCC------Cc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQW-----GVVR-------------------------------TSDKP------GL 127 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~-----~~~~-------------------------------vs~~~------gt 127 (243)
...+.|+|+|+||||||||+|+|++.. ++.. +.+.+ |+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 457899999999999999999999731 1111 11111 22
Q ss_pred eEEEEE-----EEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhc
Q 026112 128 TQTINF-----FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS 202 (243)
Q Consensus 128 T~~~~~-----~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~ 202 (243)
|++... ...+..+.++||||+..+ + ..+ ...+|++++|+|++.+..... +.. .-.
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~---~------~~l-------~~~~d~vl~V~d~~~~~~~~~--i~~--~il 211 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQS---E------FAV-------ADMVDMFVLLLPPAGGDELQG--IKR--GII 211 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--C---H------HHH-------HTTCSEEEEEECCC----------------C
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchh---h------hhH-------HhhCCEEEEEEcCCcchhHHH--hHH--HHH
Confidence 322100 013568999999998642 1 111 124899999999876421111 111 113
Q ss_pred CCcEEEEeecCCCCChHHHHHHHHHHHHHH
Q 026112 203 QTKYQVVLTKTDTVFPIDVARRAMQIEESL 232 (243)
Q Consensus 203 ~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l 232 (243)
..|.++|+||+|+............+...+
T Consensus 212 ~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l 241 (349)
T 2www_A 212 EMADLVAVTKSDGDLIVPARRIQAEYVSAL 241 (349)
T ss_dssp CSCSEEEECCCSGGGHHHHHHHHHHHHHHH
T ss_pred hcCCEEEEeeecCCCchhHHHHHHHHHHHH
Confidence 568899999999986544444444454443
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-14 Score=132.04 Aligned_cols=134 Identities=19% Similarity=0.261 Sum_probs=95.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccc--------------cccC------CCCceE---EEEEEEeCCcEEEEeCCCCC
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVV--------------RTSD------KPGLTQ---TINFFKLGTKLCLVDLPGYG 149 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~--------------~vs~------~~gtT~---~~~~~~~~~~~~liDTpG~~ 149 (243)
.+|+|+|..++|||||..+|+-..... .+++ ..|.|. .+.+.+.+..+.||||||+.
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv 111 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ 111 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence 489999999999999999997432100 0111 112221 22344457899999999986
Q ss_pred CCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHH
Q 026112 150 FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE 229 (243)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~ 229 (243)
+.. .+ +.+.++ .+|++++|+|+..++..+...+++.+...++|.++++||+|.... +..+.++.++
T Consensus 112 DF~--~E--------v~raL~---~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~a-d~~~~~~~i~ 177 (548)
T 3vqt_A 112 DFS--ED--------TYRVLT---AVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREAL-HPLDVMADIE 177 (548)
T ss_dssp GCS--HH--------HHHHHH---SCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCC-CHHHHHHHHH
T ss_pred HHH--HH--------HHHHHH---hcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhc-chhHhhhhhh
Confidence 521 11 122222 299999999999999999999999999999999999999999764 4677778888
Q ss_pred HHHhhCCCccc
Q 026112 230 ESLKANNSLVQ 240 (243)
Q Consensus 230 ~~l~~~~~~~~ 240 (243)
+.+.....+++
T Consensus 178 ~~l~~~~~p~~ 188 (548)
T 3vqt_A 178 QHLQIECAPMT 188 (548)
T ss_dssp HHHTSEEEESE
T ss_pred hhcCCceEeEE
Confidence 88876544433
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-14 Score=132.23 Aligned_cols=137 Identities=18% Similarity=0.183 Sum_probs=83.0
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE--------Ee---CCcEEEEeCCCCCCCccchHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--------KL---GTKLCLVDLPGYGFAYAKEEVK 158 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~--------~~---~~~~~liDTpG~~~~~~~~~~~ 158 (243)
....+|+++|.+|||||||+|+|++........+..|.+...... .. +..+.+|||||......
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~----- 113 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHA----- 113 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTT-----
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHH-----
Confidence 356799999999999999999999873211112222222111100 11 46799999999543211
Q ss_pred HHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcC--CcEEEEeecCCCCChHHHHHHHHHHHHHHhhCC
Q 026112 159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ--TKYQVVLTKTDTVFPIDVARRAMQIEESLKANN 236 (243)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~--~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~ 236 (243)
+...++.. +|++++|+|++.. .....++..+...+ .|+++|+||+|+....+.. .+.+++.+...+
T Consensus 114 -----~~~~~l~~---~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~--~~~~~~~~~~~~ 181 (535)
T 3dpu_A 114 -----SHQFFMTR---SSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIE--QKKINERFPAIE 181 (535)
T ss_dssp -----TCHHHHHS---SEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCC--HHHHHHHCGGGT
T ss_pred -----HHHHHccC---CcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccC--HHHHHHHHHhcC
Confidence 11223333 8999999998753 44456777777654 8999999999997643321 234555555555
Q ss_pred CccccCC
Q 026112 237 SLVQPVV 243 (243)
Q Consensus 237 ~~~~pi~ 243 (243)
..+++++
T Consensus 182 ~~~~~vS 188 (535)
T 3dpu_A 182 NRFHRIS 188 (535)
T ss_dssp TCEEECC
T ss_pred CceEEEe
Confidence 5566554
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=4e-14 Score=125.46 Aligned_cols=138 Identities=20% Similarity=0.265 Sum_probs=88.3
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe----CCcEEEEeCCCCCCCccc-hHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAK-EEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~----~~~~~liDTpG~~~~~~~-~~~~~~~~~~~~ 166 (243)
...|+|+|++|||||||+|+|++.. ..++.++++|........ ...+.++||||+.+.... ..+ ..
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~--~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L-------~~ 227 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAH--PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGL-------GL 227 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSC--CEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCS-------CH
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCC--ccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhh-------hH
Confidence 5679999999999999999999983 467788888876544332 267999999998653111 001 11
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh-----cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccc
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 240 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-----~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~ 240 (243)
.++.....++.+++++|.+ .-...+ ..+.+.+.. ...|.++|+||+|+... .....+.+.+...+..++
T Consensus 228 ~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~----~~~~~l~~~l~~~g~~vi 302 (416)
T 1udx_A 228 EFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE----EAVKALADALAREGLAVL 302 (416)
T ss_dssp HHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH----HHHHHHHHHHHTTTSCEE
T ss_pred HHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH----HHHHHHHHHHHhcCCeEE
Confidence 1222334589999999986 111111 122222222 25899999999999875 233445555555555555
Q ss_pred cCC
Q 026112 241 PVV 243 (243)
Q Consensus 241 pi~ 243 (243)
+++
T Consensus 303 ~iS 305 (416)
T 1udx_A 303 PVS 305 (416)
T ss_dssp ECC
T ss_pred EEE
Confidence 553
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-14 Score=126.94 Aligned_cols=85 Identities=24% Similarity=0.277 Sum_probs=59.8
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE------------------------eCCcEEEEeCCCC
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK------------------------LGTKLCLVDLPGY 148 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~------------------------~~~~~~liDTpG~ 148 (243)
++|+++|.||+|||||+|+|++. . ..+++++++|.+.+... .+..+.+|||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~-~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRA-N-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHH-H-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC-C-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 57999999999999999999997 3 56788888876543321 2356999999998
Q ss_pred CCCccc-hHHHHHHHHHHHHHHhcccCccEEEEEEeCCC
Q 026112 149 GFAYAK-EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186 (243)
Q Consensus 149 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~ 186 (243)
...... ..+. ..++...+.+|++++|+|++.
T Consensus 80 ~~~a~~~~~lg-------~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLG-------NQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTT-------HHHHHHHHTCSEEEEEEECCC
T ss_pred cccccccchHH-------HHHHHHHHhCCEEEEEEECCC
Confidence 754221 1121 122222334999999999874
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-14 Score=115.93 Aligned_cols=113 Identities=19% Similarity=0.140 Sum_probs=65.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE---EEEEeC--CcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~---~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.++|+++|.+|||||||+|++++.. ...++.+++++.+. .....+ ..+.++||+|.... . ..+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~---~------~~~~~ 75 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVH-DSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGE---N------EWLHD 75 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS-CCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-------------CTTGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCc-CCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcch---h------hhHHH
Confidence 4699999999999999999999752 23333333332222 121123 24578999996431 0 00111
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~ 217 (243)
.|++. +|++++|+|.+...+... ..+...+.. .+.|+++|.||+|+..
T Consensus 76 ~~~~~---~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 128 (192)
T 2cjw_A 76 HCMQV---GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 128 (192)
T ss_dssp GHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGG
T ss_pred hhccc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhc
Confidence 22222 799999999875322221 233333332 3689999999999864
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.5e-14 Score=134.76 Aligned_cols=128 Identities=19% Similarity=0.238 Sum_probs=85.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccC---------------CCCceEEE---EEEEe----------------C
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD---------------KPGLTQTI---NFFKL----------------G 137 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~---------------~~gtT~~~---~~~~~----------------~ 137 (243)
.++|+|+|.+|+|||||+|+|+.... ...+. ..|.|... .+... +
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g-~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAG-IISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHB-CCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcC-CcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 46999999999999999999997521 11111 12223221 11111 4
Q ss_pred CcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC-
Q 026112 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV- 216 (243)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~- 216 (243)
..+.+|||||+.+.. .....+++. +|++++|+|+..+...+...++..+...++|+++|+||+|+.
T Consensus 98 ~~i~liDTPG~~df~----------~~~~~~l~~---aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 98 FLINLIDSPGHVDFS----------SEVTAALRV---TDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEECCCCCCSSC----------HHHHHHHHT---CSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred ceEEEEECcCchhhH----------HHHHHHHHh---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcch
Confidence 578999999986521 122333333 999999999999888888777777777789999999999986
Q ss_pred -----ChHH----HHHHHHHHHHHHh
Q 026112 217 -----FPID----VARRAMQIEESLK 233 (243)
Q Consensus 217 -----~~~~----~~~~~~~l~~~l~ 233 (243)
++.+ +.+.++.++..+.
T Consensus 165 ~e~~~~~~e~~~~~~~~~~~i~~~l~ 190 (842)
T 1n0u_A 165 LELQVSKEDLYQTFARTVESVNVIVS 190 (842)
T ss_dssp HTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHHHHHHh
Confidence 2333 3444555555553
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-13 Score=127.80 Aligned_cols=128 Identities=23% Similarity=0.274 Sum_probs=90.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccccc----cc------ccC------CCCce---EEEEEEEeCCcEEEEeCCCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV----VR------TSD------KPGLT---QTINFFKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~----~~------vs~------~~gtT---~~~~~~~~~~~~~liDTpG~~~~ 151 (243)
...+|+++|++|+|||||+++|++.... .. ..+ ..+.| ....+...+..+.+|||||+.+.
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 4579999999999999999999954211 00 000 11222 22333344678999999997531
Q ss_pred ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHH
Q 026112 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES 231 (243)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~ 231 (243)
......++.. +|++++|+|+..+.......++..+...++|+++|+||+|+. ....+..+.+.+.
T Consensus 88 ----------~~~~~~~l~~---ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~--~~~~~~~~~l~~~ 152 (665)
T 2dy1_A 88 ----------VGEIRGALEA---ADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG--GDYYALLEDLRST 152 (665)
T ss_dssp ----------HHHHHHHHHH---CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC--CCHHHHHHHHHHH
T ss_pred ----------HHHHHHHHhh---cCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh--hhHHHHHHHHHHH
Confidence 1122233332 899999999988888888888888888899999999999997 3455666677776
Q ss_pred Hh
Q 026112 232 LK 233 (243)
Q Consensus 232 l~ 233 (243)
+.
T Consensus 153 l~ 154 (665)
T 2dy1_A 153 LG 154 (665)
T ss_dssp HC
T ss_pred hC
Confidence 65
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.9e-13 Score=115.94 Aligned_cols=116 Identities=15% Similarity=0.137 Sum_probs=71.4
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE--EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~--~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
+|+++|.+|+|||||++.+.+... .......+.|..+.+. .....+.+|||||...-..+. | ....|++.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~-~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQErf~~~~-----l--~~~~yyr~ 72 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQ-PLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFEPS-----Y--DSERLFKS 72 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCC-SGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSSSCCCS-----H--HHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHcCCC-CCccceecCeeeeeeEEEccEEEEEEEECCCchhccchh-----h--hhhhhccC
Confidence 588999999999999998876521 2111112222222211 224679999999975421100 1 12345544
Q ss_pred ccCccEEEEEEeCCCCCChhhHHHHHHHH---h--cCCcEEEEeecCCCCChHH
Q 026112 172 RVSLKRVCLLIDTKWGVKPRDHELISLME---R--SQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~~~~~~~l~---~--~~~p~i~v~nK~D~~~~~~ 220 (243)
++++++|+|++.........+.+++. . .++|+++|+||+|+..+.+
T Consensus 73 ---a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~ 123 (331)
T 3r7w_B 73 ---VGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDF 123 (331)
T ss_dssp ---CSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHH
T ss_pred ---CCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhh
Confidence 89999999988763232233323232 2 3689999999999987654
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=6.3e-13 Score=113.18 Aligned_cols=151 Identities=21% Similarity=0.256 Sum_probs=82.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCC------CceEEE---EEE----EeCCcEEEEeCCCCCCCcc----
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP------GLTQTI---NFF----KLGTKLCLVDLPGYGFAYA---- 153 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~------gtT~~~---~~~----~~~~~~~liDTpG~~~~~~---- 153 (243)
-.++|+++|++|+|||||+|.|++.. ....+..+ ..|... ... .....+.++||||++....
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~-~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTD-LYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCC-ccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34789999999999999999998851 12111111 011111 111 1134689999999853211
Q ss_pred chHHHHHHHHHHHHHHhccc----------CccEEEEEEeCC-CCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHH
Q 026112 154 KEEVKDAWEELVKEYVSTRV----------SLKRVCLLIDTK-WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVA 222 (243)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~----------~~d~v~~vvd~~-~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~ 222 (243)
-..+...+......|+.... .+++++++++.+ .++...+.++++.+.. ..|+++|+||+|+....++.
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~-~~~iilV~~K~Dl~~~~e~~ 174 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHN-KVNIVPVIAKADTLTLKERE 174 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTT-TSCEEEEECCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHHh-cCCEEEEEEeCCCCCHHHHH
Confidence 01111111122223333221 134455565543 3577777666665543 57999999999999877766
Q ss_pred HHHHHHHHHHhhCCCccccCC
Q 026112 223 RRAMQIEESLKANNSLVQPVV 243 (243)
Q Consensus 223 ~~~~~l~~~l~~~~~~~~pi~ 243 (243)
...+.+.+.+..++..+++++
T Consensus 175 ~~~~~~~~~~~~~~~~~~e~S 195 (301)
T 2qnr_A 175 RLKKRILDEIEEHNIKIYHLP 195 (301)
T ss_dssp HHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHHHHcCCeEEecC
Confidence 666777777777777766653
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-13 Score=108.88 Aligned_cols=113 Identities=19% Similarity=0.213 Sum_probs=68.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|++|||||||+|+|++........+..|++........ + ..+.+|||||..... .....+
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~----------~~~~~~ 74 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYR----------RITSAY 74 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTT----------CCCHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhh----------hhhHHH
Confidence 368999999999999999999997321112222222222222222 3 356789999964311 111222
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~ 217 (243)
+. .++++++|+|.....+... ..++..+.. .+.|+++|+||+|+..
T Consensus 75 ~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 75 YR---GAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 124 (199)
T ss_dssp HT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred Hh---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 22 3799999999875422222 234444433 3689999999999964
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-13 Score=120.54 Aligned_cols=123 Identities=19% Similarity=0.227 Sum_probs=73.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc-----ccccccCCCCceE-------------------EEEE-------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQ-------------------TINF------------- 133 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~-----~~~~vs~~~gtT~-------------------~~~~------------- 133 (243)
..++|+++|.+|+|||||++.|+... +...+..-++++. .+..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 45799999999999999999997431 1111111111111 0000
Q ss_pred ----------EEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcC
Q 026112 134 ----------FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ 203 (243)
Q Consensus 134 ----------~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~ 203 (243)
...+..+.+|||||++.+ . ..+. ..+|++++|+|+..+..... +.. .-..
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~~---~------~~~~-------~~aD~vl~V~d~~~~~~~~~--l~~--~~~~ 217 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQS---E------VAVA-------NMVDTFVLLTLARTGDQLQG--IKK--GVLE 217 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSSH---H------HHHH-------TTCSEEEEEEESSTTCTTTT--CCT--TSGG
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCcH---H------HHHH-------HhCCEEEEEECCCCCccHHH--HHH--hHhh
Confidence 002578999999998651 0 1111 34999999999765422111 111 0124
Q ss_pred CcEEEEeecCCCCChHHHHHHHHHHHHHHh
Q 026112 204 TKYQVVLTKTDTVFPIDVARRAMQIEESLK 233 (243)
Q Consensus 204 ~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~ 233 (243)
.|+++|+||+|+............+.+.+.
T Consensus 218 ~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~ 247 (355)
T 3p32_A 218 LADIVVVNKADGEHHKEARLAARELSAAIR 247 (355)
T ss_dssp GCSEEEEECCCGGGHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCcChhHHHHHHHHHHHHHh
Confidence 699999999999876666666666666553
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.2e-13 Score=127.47 Aligned_cols=133 Identities=20% Similarity=0.230 Sum_probs=91.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccc----cc------cC------CCCceEE---EEEEEe-------CCcEEEEe
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV----RT------SD------KPGLTQT---INFFKL-------GTKLCLVD 144 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~----~v------s~------~~gtT~~---~~~~~~-------~~~~~liD 144 (243)
+..+|+|+|+.++|||||..+|+...... .+ .+ ..|.|.. +.+.+. +..+.|||
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 45699999999999999999988542110 11 11 1222322 222221 35799999
Q ss_pred CCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHH
Q 026112 145 LPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARR 224 (243)
Q Consensus 145 TpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~ 224 (243)
|||+.+. ..++. +.++. +|++++|+|+..++..+...+++.+...++|.++++||+|.... +....
T Consensus 92 TPGHvDF--~~Ev~--------~aLr~---~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a-~~~~~ 157 (709)
T 4fn5_A 92 TPGHVDF--TIEVE--------RSLRV---LDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGA-NFLRV 157 (709)
T ss_dssp CCSCTTC--HHHHH--------HHHHH---CSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTC-CHHHH
T ss_pred CCCCccc--HHHHH--------HHHHH---hCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCc-cHHHH
Confidence 9998762 12221 22222 99999999999999999999999999999999999999999754 46667
Q ss_pred HHHHHHHHhhCCC
Q 026112 225 AMQIEESLKANNS 237 (243)
Q Consensus 225 ~~~l~~~l~~~~~ 237 (243)
.+.+++.+.....
T Consensus 158 ~~ei~~~l~~~~~ 170 (709)
T 4fn5_A 158 VEQIKKRLGHTPV 170 (709)
T ss_dssp HHHHHHHHCSCEE
T ss_pred HHHhhhhccccee
Confidence 7778887765433
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.4e-14 Score=129.55 Aligned_cols=129 Identities=23% Similarity=0.266 Sum_probs=91.3
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccc----ccc------cCC------CCceEE---EEEEEeCCcEEEEeCCCCCCCc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGV----VRT------SDK------PGLTQT---INFFKLGTKLCLVDLPGYGFAY 152 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~----~~v------s~~------~gtT~~---~~~~~~~~~~~liDTpG~~~~~ 152 (243)
..+|+|+|+.++|||||..+|+..... ..+ .+. .|.|.. +.+.+.+..+.|+||||+.+.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF- 80 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF- 80 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST-
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH-
Confidence 358999999999999999998743210 011 111 122222 223345788999999998762
Q ss_pred cchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHH
Q 026112 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 232 (243)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l 232 (243)
.....+.+..+|++++|+|+..++..+...+++.+...++|.++++||+|.... +.....+.+++.+
T Consensus 81 ------------~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a-~~~~~~~~i~~~l 147 (638)
T 3j25_A 81 ------------LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGI-DLSTVYQDIKEKL 147 (638)
T ss_dssp ------------HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSC-CSHHHHHHHHHTT
T ss_pred ------------HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccC-CHHHHHHHHHHHh
Confidence 112222223499999999999999999999999999999999999999998754 3455566666666
Q ss_pred hh
Q 026112 233 KA 234 (243)
Q Consensus 233 ~~ 234 (243)
..
T Consensus 148 ~~ 149 (638)
T 3j25_A 148 SA 149 (638)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.1e-13 Score=117.01 Aligned_cols=125 Identities=19% Similarity=0.143 Sum_probs=73.3
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccc-----ccccccCCCCceEE--------------------EEEE----------
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQT--------------------INFF---------- 134 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~-----~~~~vs~~~gtT~~--------------------~~~~---------- 134 (243)
.....|+++|++|+|||||+|.|++.. +...++.-+++|.. +...
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 356799999999999999999997531 22222222222210 0000
Q ss_pred ------------EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhc
Q 026112 135 ------------KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS 202 (243)
Q Consensus 135 ------------~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~ 202 (243)
..+..+.++||||+.+.. . .. ...+|++++|+|+..+..... +.. ...
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~--~-------~~-------~~~aD~vl~Vvd~~~~~~~~~---l~~-~~~ 193 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSE--T-------EV-------ARMVDCFISLQIAGGGDDLQG---IKK-GLM 193 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHH--H-------HH-------HTTCSEEEEEECC------CC---CCH-HHH
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchH--H-------HH-------HHhCCEEEEEEeCCccHHHHH---HHH-hhh
Confidence 125689999999986511 0 11 134999999999865421111 100 112
Q ss_pred CCcEEEEeecCCCCChHHHHHHHHHHHHHHhh
Q 026112 203 QTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 234 (243)
Q Consensus 203 ~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~ 234 (243)
+.|.++|+||+|+............+++.+..
T Consensus 194 ~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~ 225 (341)
T 2p67_A 194 EVADLIVINKDDGDNHTNVAIARHMYESALHI 225 (341)
T ss_dssp HHCSEEEECCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred cccCEEEEECCCCCChHHHHHHHHHHHHHHHh
Confidence 46889999999998765555555566655443
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.39 E-value=7.1e-13 Score=105.09 Aligned_cols=113 Identities=20% Similarity=0.226 Sum_probs=68.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe-CC--cEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-GT--KLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~-~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|++|||||||+|+|++........+..+++........ +. .+.+|||||...... +...+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~----------~~~~~ 98 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA----------ITSAY 98 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSC----------CCHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhh----------hhHHH
Confidence 479999999999999999999997421112222222222222222 32 456799999754211 11222
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~ 217 (243)
+. .++.+++|+|......... ..++..+.. ...|+++|+||+|+..
T Consensus 99 ~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 99 YR---GAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 148 (191)
T ss_dssp HT---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred hh---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 22 2788999999875322122 234443432 3679999999999864
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.2e-12 Score=106.19 Aligned_cols=48 Identities=25% Similarity=0.225 Sum_probs=32.1
Q ss_pred CccEEEEEEeCCCC--CChhh-HHHHHHHH----hcCCcEEEEeecCCCCChHHH
Q 026112 174 SLKRVCLLIDTKWG--VKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDV 221 (243)
Q Consensus 174 ~~d~v~~vvd~~~~--~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~~~~~ 221 (243)
.+|++++|+|++.. .+... ..++..+. ..+.|+++|+||+|+......
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v 216 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI 216 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH
Confidence 48999999998764 33322 23343332 247999999999999775544
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-12 Score=109.43 Aligned_cols=61 Identities=33% Similarity=0.610 Sum_probs=43.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~ 152 (243)
..++|+++|.||+|||||+|+|++. ....+++.+|+|++.+....+..+.++||||+..+.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~ 179 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPK 179 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTS-CCC------------CCEEETTTEEEEECCCCCCSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcC-ceeecCCCCCeeeeeEEEEeCCCEEEEECcCcCCCC
Confidence 4579999999999999999999998 567899999999998877778899999999998754
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-12 Score=114.09 Aligned_cols=88 Identities=23% Similarity=0.204 Sum_probs=47.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe--------------------CCcEEEEeCCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGF 150 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~--------------------~~~~~liDTpG~~~ 150 (243)
...+|+++|.||+|||||+|+|++. . ..++++|+||.++..... +..+.+|||||+..
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~-~-~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNS-Q-ASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC-C-ccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 4578999999999999999999998 4 478899999987644321 23499999999865
Q ss_pred CccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCC
Q 026112 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186 (243)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~ 186 (243)
..... ..+...++...+.+|++++|+|++.
T Consensus 99 ~as~~------~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 99 GAHNG------QGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp --------------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccchh------hHHHHHHHHHHHhcCeEEEEEecCC
Confidence 32111 1111122333344999999999864
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-11 Score=102.30 Aligned_cols=121 Identities=17% Similarity=0.185 Sum_probs=70.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHh-----cccccccccCCCC----------------ceEEEE-----------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALT-----RQWGVVRTSDKPG----------------LTQTIN----------------- 132 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~-----~~~~~~~vs~~~g----------------tT~~~~----------------- 132 (243)
..+.++++|.+|+|||||++.|+ +. +...+..-++ ++++..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~-~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNY-KVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL 91 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTS-CEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCC-eEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence 35678889999999999999998 54 3333332222 111100
Q ss_pred ------------EEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHH-H----
Q 026112 133 ------------FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE-L---- 195 (243)
Q Consensus 133 ------------~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~-~---- 195 (243)
....+..+.+|||||..+.. .+..+.......... +++++++|+.......+.. .
T Consensus 92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~-------~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~ 163 (262)
T 1yrb_A 92 MEKFNEYLNKILRLEKENDYVLIDTPGQMETF-------LFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFA 163 (262)
T ss_dssp HTTHHHHHHHHHHHHHHCSEEEEECCSSHHHH-------HHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCEEEEeCCCccchh-------hhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHH
Confidence 00012479999999974310 011111112222345 8899999986544443321 1
Q ss_pred HHHHHhcCCcEEEEeecCCCCChHH
Q 026112 196 ISLMERSQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 196 ~~~l~~~~~p~i~v~nK~D~~~~~~ 220 (243)
.......+.|+++|+||+|+....+
T Consensus 164 ~~~~~~~~~p~~iv~NK~D~~~~~~ 188 (262)
T 1yrb_A 164 LLIDLRLGATTIPALNKVDLLSEEE 188 (262)
T ss_dssp HHHHHHHTSCEEEEECCGGGCCHHH
T ss_pred HHHhcccCCCeEEEEeccccccccc
Confidence 1223345789999999999987654
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.20 E-value=7e-12 Score=101.22 Aligned_cols=107 Identities=9% Similarity=0.017 Sum_probs=63.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc----ccccccCCCCceEE----------EEEE-------------------EeC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQT----------INFF-------------------KLG 137 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~----~~~~vs~~~gtT~~----------~~~~-------------------~~~ 137 (243)
..+.|+++|.+|+|||||+|+|++.. +...+...++++.+ +... ..+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 35799999999999999999998751 12223333332211 0000 013
Q ss_pred CcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
..+.+|||+|.... +. ++. ...+.+++|+|+..+... ........+.|+++|+||+|+..
T Consensus 109 ~d~iiidt~G~~~~--~~------------~~~--~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~~ 168 (221)
T 2wsm_A 109 CDLLLIENVGNLIC--PV------------DFD--LGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALAE 168 (221)
T ss_dssp CSEEEEEEEEBSSG--GG------------GCC--CSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGHH
T ss_pred CCEEEEeCCCCCCC--Cc------------hhc--cccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCCc
Confidence 46788888884211 10 000 125788999998765321 11222334689999999999864
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.19 E-value=9.8e-12 Score=109.21 Aligned_cols=88 Identities=17% Similarity=0.201 Sum_probs=62.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE--eC------------------CcEEEEeCCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LG------------------TKLCLVDLPGYGF 150 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~--~~------------------~~~~liDTpG~~~ 150 (243)
.+.+|+|+|.+|||||||+|+|++. ..+.++++|+||.++.... .+ ..+.++||||+..
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~-~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKS-VLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHS-TTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC-CcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4679999999999999999999998 5458899999998764332 22 2589999999765
Q ss_pred Cccc-hHHHHHHHHHHHHHHhcccCccEEEEEEeCCC
Q 026112 151 AYAK-EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186 (243)
Q Consensus 151 ~~~~-~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~ 186 (243)
.... +.+.. .++.....+|.+++|+|+..
T Consensus 98 ~~s~~e~L~~-------~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGN-------AFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCH-------HHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHH-------HHHHHHHHHHHHHHHHhccc
Confidence 3222 21211 22222334899999999754
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=6.3e-11 Score=102.36 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=22.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~ 114 (243)
.+..|+++|++|||||||+|.|++
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999985
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3.6e-10 Score=102.28 Aligned_cols=117 Identities=16% Similarity=0.234 Sum_probs=68.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHh------cccccccccC---CCCc--------eE-EEEEEE-----------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALT------RQWGVVRTSD---KPGL--------TQ-TINFFK----------------- 135 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~------~~~~~~~vs~---~~gt--------T~-~~~~~~----------------- 135 (243)
....|+++|.+||||||+++.|+ +. +...++. .++. ++ .+.++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~-kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGW-KTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCC-eEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999 44 3222221 0000 00 011111
Q ss_pred ---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcE-EEEee
Q 026112 136 ---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLT 211 (243)
Q Consensus 136 ---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~-i~v~n 211 (243)
.+..+.||||||.... ..........+.. . ..+|.+++|+|+..+.. .....+.+... .|+ .+|+|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~--~~~l~~el~~~~~-~----i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlN 248 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQ--EDSLFEEMLQVAN-A----IQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVT 248 (504)
T ss_dssp HHHTTCCEEEEEECCCCTT--CHHHHHHHHHHHH-H----HCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEE
T ss_pred HHHCCCcEEEEeCCCCccc--chhHHHHHHHHHh-h----hcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEe
Confidence 3568999999998642 1111111111111 1 14899999999987643 34444444443 675 89999
Q ss_pred cCCCCCh
Q 026112 212 KTDTVFP 218 (243)
Q Consensus 212 K~D~~~~ 218 (243)
|+|....
T Consensus 249 K~D~~~~ 255 (504)
T 2j37_W 249 KLDGHAK 255 (504)
T ss_dssp CTTSCCC
T ss_pred CCccccc
Confidence 9998754
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.1e-11 Score=101.68 Aligned_cols=59 Identities=27% Similarity=0.544 Sum_probs=43.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~ 152 (243)
.+++++|.||+|||||+|+|++. ....+++.+|+|+.......+..+.++||||+....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK-RASSVGAQPGITKGIQWFSLENGVKILDTPGILYKN 158 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT-CC----------CCSCEEECTTSCEEESSCEECCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcc-cccccCCCCCCccceEEEEeCCCEEEEECCCcccCc
Confidence 69999999999999999999998 556788999999988877778889999999988653
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-09 Score=96.13 Aligned_cols=115 Identities=19% Similarity=0.241 Sum_probs=71.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccccc---ccCCCCceEEEEEEEe--CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR---TSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~---vs~~~gtT~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
...++|+|++|||||||+|+|+|...... ......+|+....+.. ...+.++|+||+... ...+ ..++.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~--~~~~----~~~L~ 142 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGST--NFPP----DTYLE 142 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGS--SCCH----HHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccch--HHHH----HHHHH
Confidence 45899999999999999999999521111 1111222332222222 246899999998642 1112 12222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
.. .....+..++ ++..+ ...++..+...+...+.|+++|+||.|+.
T Consensus 143 ~~--~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 143 KM--KFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp HT--TGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred Hc--CCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCccc
Confidence 21 1122355554 77654 46777888888888899999999999975
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.9e-10 Score=105.69 Aligned_cols=97 Identities=15% Similarity=0.154 Sum_probs=58.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCC----ceEEEEEEE------eCCcEEEEeCCCCCCCcc--chHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG----LTQTINFFK------LGTKLCLVDLPGYGFAYA--KEEVK 158 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~g----tT~~~~~~~------~~~~~~liDTpG~~~~~~--~~~~~ 158 (243)
+.++|+|+|.||+|||||+|+|+|.. ... +.++ +|+.+..+. .+..+.++||||+.+... .....
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~-~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~ 113 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKK-KGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDS 113 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS-SCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHH
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCC-Ccc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHH
Confidence 45789999999999999999999984 221 3333 444443331 356899999999986432 11111
Q ss_pred HHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHH
Q 026112 159 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM 199 (243)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l 199 (243)
..+ .+...+ ++ ++|+|+..++...+..++..+
T Consensus 114 ~~f--ala~ll-----ss--~lv~n~~~~i~~~dl~~l~~v 145 (592)
T 1f5n_A 114 WIF--ALAVLL-----SS--TFVYNSIGTINQQAMDQLYYV 145 (592)
T ss_dssp HHH--HHHHHH-----CS--EEEEEEESCSSHHHHHTTHHH
T ss_pred HHH--HHHHHh-----cC--eEEEECCCCccHHHHHHHHHH
Confidence 111 011111 22 466776666777776555443
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.99 E-value=3.6e-09 Score=98.10 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=49.2
Q ss_pred CcEEEEeCCCCCCC--cc-chHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCC-hhhHHHHHHHHhcCCcEEEEeecC
Q 026112 138 TKLCLVDLPGYGFA--YA-KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-PRDHELISLMERSQTKYQVVLTKT 213 (243)
Q Consensus 138 ~~~~liDTpG~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~-~~~~~~~~~l~~~~~p~i~v~nK~ 213 (243)
+.+.++|.||+... .+ +......+..++..|+... ..++++++.+..... .....+++.+...+.+.++|+||.
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~--~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~ 224 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQ--ETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKP 224 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSS--SCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcC--CCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecch
Confidence 56999999998753 11 2223445556666665432 355666666543322 333566677767789999999999
Q ss_pred CCCChH
Q 026112 214 DTVFPI 219 (243)
Q Consensus 214 D~~~~~ 219 (243)
|++...
T Consensus 225 Dlv~~g 230 (608)
T 3szr_A 225 DLVDKG 230 (608)
T ss_dssp GGSSSS
T ss_pred hhcCcc
Confidence 998654
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.6e-07 Score=83.39 Aligned_cols=120 Identities=16% Similarity=0.201 Sum_probs=69.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc-----ccccccC--C--------------CCce-------EEEE-E-------E-
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSD--K--------------PGLT-------QTIN-F-------F- 134 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~-----~~~~vs~--~--------------~gtT-------~~~~-~-------~- 134 (243)
...|+++|.+|+||||++..|+... ++..+.. + .+.. .+.. . .
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999988421 2111110 0 0110 0000 0 0
Q ss_pred EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCC
Q 026112 135 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 214 (243)
Q Consensus 135 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D 214 (243)
..+..+.|+||||.... ..........+. . ...+|.+++|+|+..+ .......+.+.....+..+|+||+|
T Consensus 180 ~~~~DvVIIDTaGrl~~--d~~lm~el~~i~-~----~~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~~i~gVIlTKlD 250 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKE--DKALIEEMKQIS-N----VIHPHEVILVIDGTIG--QQAYNQALAFKEATPIGSIIVTKLD 250 (443)
T ss_dssp HTTCSEEEEECCCCSSC--CHHHHHHHHHHH-H----HHCCSEEEEEEEGGGG--GGHHHHHHHHHHSCTTEEEEEECCS
T ss_pred hCCCCEEEEECCCcccc--hHHHHHHHHHHH-H----hhcCceEEEEEeCCCc--hhHHHHHHHHHhhCCCeEEEEECCC
Confidence 01478999999997542 121211122211 1 1237899999998764 3344455555555556779999999
Q ss_pred CCChHH
Q 026112 215 TVFPID 220 (243)
Q Consensus 215 ~~~~~~ 220 (243)
......
T Consensus 251 ~~~~gG 256 (443)
T 3dm5_A 251 GSAKGG 256 (443)
T ss_dssp SCSSHH
T ss_pred Cccccc
Confidence 986543
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.76 E-value=6.8e-08 Score=85.91 Aligned_cols=117 Identities=16% Similarity=0.153 Sum_probs=69.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc-----cccccc------------------------CCCCceEEEE-E-E-----E
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTS------------------------DKPGLTQTIN-F-F-----K 135 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~-----~~~~vs------------------------~~~gtT~~~~-~-~-----~ 135 (243)
...|+++|.+|+||||+++.|.... +...++ +..+++++.. . . .
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998731 111111 1111333321 0 0 0
Q ss_pred eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCC-c-EEEEeecC
Q 026112 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-K-YQVVLTKT 213 (243)
Q Consensus 136 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~-p-~i~v~nK~ 213 (243)
.+..+.++||||.... .. ..+..+ . .......+|.+++|+|+..+. ......+.+.. .. | ..+|+||+
T Consensus 179 ~~~D~vIIDT~G~~~~--~~---~l~~~l-~-~i~~~~~~d~vllVvda~~g~--~~~~~~~~~~~-~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKE--EK---GLLEEM-K-QIKEITNPDEIILVIDGTIGQ--QAGIQAKAFKE-AVGEIGSIIVTKL 248 (432)
T ss_dssp SSCSEEEEECCCSCSS--HH---HHHHHH-H-HTTSSSCCSEEEEEEEGGGGG--GHHHHHHHHHT-TSCSCEEEEEECS
T ss_pred hCCCEEEEcCCCCccc--cH---HHHHHH-H-HHHHHhcCcceeEEeeccccH--HHHHHHHHHhh-cccCCeEEEEeCC
Confidence 3678999999997641 11 111222 1 123333589999999987652 22333333333 35 6 88999999
Q ss_pred CCCCh
Q 026112 214 DTVFP 218 (243)
Q Consensus 214 D~~~~ 218 (243)
|....
T Consensus 249 D~~~~ 253 (432)
T 2v3c_C 249 DGSAK 253 (432)
T ss_dssp SSCST
T ss_pred CCccc
Confidence 98754
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.9e-08 Score=80.07 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=22.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..++|+++|.+|+|||||+++|+..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999875
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.62 E-value=3e-07 Score=81.65 Aligned_cols=121 Identities=20% Similarity=0.198 Sum_probs=68.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc-----cccccc----------------CCCCceE-------EEE--------EE
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTS----------------DKPGLTQ-------TIN--------FF 134 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~-----~~~~vs----------------~~~gtT~-------~~~--------~~ 134 (243)
....|+++|++|+||||++..|+... ++..++ ...+... +.. ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 34577899999999999999988421 111110 0011100 000 00
Q ss_pred -EeCCcEEEEeCCCCCCC-ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeec
Q 026112 135 -KLGTKLCLVDLPGYGFA-YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTK 212 (243)
Q Consensus 135 -~~~~~~~liDTpG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK 212 (243)
..++.+.++||||.... .... .......+.. .. ..+.+++|+|+..+ .......+.+...-.+..+|+||
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~-lm~el~~i~~-~~----~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~~~gVIlTK 247 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETK-LLEEMKEMYD-VL----KPDDVILVIDASIG--QKAYDLASRFHQASPIGSVIITK 247 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTH-HHHHHHHHHH-HH----CCSEEEEEEEGGGG--GGGHHHHHHHHHHCSSEEEEEEC
T ss_pred HhcCCCEEEEECCCCccccCCHH-HHHHHHHHHH-hh----CCcceEEEEeCccc--hHHHHHHHHHhcccCCcEEEEec
Confidence 01568999999996430 1111 1111122111 11 26899999998764 34445555565544678899999
Q ss_pred CCCCChH
Q 026112 213 TDTVFPI 219 (243)
Q Consensus 213 ~D~~~~~ 219 (243)
+|.....
T Consensus 248 lD~~a~~ 254 (433)
T 3kl4_A 248 MDGTAKG 254 (433)
T ss_dssp GGGCSCH
T ss_pred ccccccc
Confidence 9987543
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1e-06 Score=78.45 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=22.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....|+|+|++++|||||+|.|++.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 3457899999999999999999974
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.9e-07 Score=79.34 Aligned_cols=58 Identities=33% Similarity=0.525 Sum_probs=36.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCC-------CceEEEEEEEeCCcEEEEeCCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLTQTINFFKLGTKLCLVDLPGYGF 150 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~-------gtT~~~~~~~~~~~~~liDTpG~~~ 150 (243)
.+..++|+|++|||||||+|+|++... ..++.+. ++|+.......+ ...++||||+..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~~-~~~G~I~~~~~~G~~tt~~~~~~~~~-~g~v~dtpg~~~ 236 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPELG-LRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSS 236 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEET-TEEEESSCSCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHhccccc-ccccceeeecCCCcccccHHHHhhcC-CEEEecCCCccc
Confidence 356899999999999999999998632 2233222 455544444433 468999999865
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=98.30 E-value=2.3e-06 Score=76.90 Aligned_cols=123 Identities=20% Similarity=0.226 Sum_probs=64.5
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccc-----ccccc-cCCCCc-----------eEEEEEEE-----------------
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRT-SDKPGL-----------TQTINFFK----------------- 135 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~-----~~~~v-s~~~gt-----------T~~~~~~~----------------- 135 (243)
..+-.|+|+|.+|||||||++.|.+.. .+... .+.... -+.+.++.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~ 370 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 370 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence 345688999999999999999998742 11111 010000 00011110
Q ss_pred ---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc-ccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEee
Q 026112 136 ---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST-RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLT 211 (243)
Q Consensus 136 ---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~n 211 (243)
.+..+.++||+|.... ..........+..-.... ....+-+++|+|+..+ ......++.+...-....+|+|
T Consensus 371 a~~~~~DvVLIDTaGrl~~--~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~itgvIlT 446 (503)
T 2yhs_A 371 AKARNIDVLIADTAGRLQN--KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVGLTGITLT 446 (503)
T ss_dssp HHHTTCSEEEECCCCSCCC--HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTCCSEEEEE
T ss_pred HHhcCCCEEEEeCCCccch--hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcCCCEEEEE
Confidence 1467999999997542 111111222222111111 1124678899998755 3333444444432223456789
Q ss_pred cCCCC
Q 026112 212 KTDTV 216 (243)
Q Consensus 212 K~D~~ 216 (243)
|.|..
T Consensus 447 KLD~t 451 (503)
T 2yhs_A 447 KLDGT 451 (503)
T ss_dssp CGGGC
T ss_pred cCCCc
Confidence 99964
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.30 E-value=5.8e-06 Score=69.90 Aligned_cols=119 Identities=20% Similarity=0.267 Sum_probs=65.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc-----ccccccCC---C-------------Cc-------eEEEE--------EEE
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDK---P-------------GL-------TQTIN--------FFK 135 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~-----~~~~vs~~---~-------------gt-------T~~~~--------~~~ 135 (243)
...|+++|++|+||||+++.|.+.. +...+..- + +. ..+.. ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4578899999999999999988421 11111100 0 00 00000 000
Q ss_pred -eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecC
Q 026112 136 -LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKT 213 (243)
Q Consensus 136 -~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~ 213 (243)
.++.+.++||||.......+........+ .. ...+|.+++|+|+..+ .......+.+.. ..| ..+|+||+
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i-~~----~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNI-YE----AIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHH-HH----HHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHH-HH----HhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCC
Confidence 25689999999975410111111111111 11 1138999999998643 333344444443 466 77899999
Q ss_pred CCCCh
Q 026112 214 DTVFP 218 (243)
Q Consensus 214 D~~~~ 218 (243)
|....
T Consensus 250 D~~~~ 254 (297)
T 1j8m_F 250 DGTAK 254 (297)
T ss_dssp GGCTT
T ss_pred CCCcc
Confidence 98754
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=98.25 E-value=2.4e-06 Score=73.44 Aligned_cols=68 Identities=12% Similarity=0.078 Sum_probs=41.8
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCC-------C-CChhhH---HHHHHHHh----
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-------G-VKPRDH---ELISLMER---- 201 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~-------~-~~~~~~---~~~~~l~~---- 201 (243)
+..+.+|||+|.. . +......|+. .++++++|+|.+. . -...-. .+++.+..
T Consensus 160 ~v~l~iwDtaGQe------~----~R~~w~~yy~---~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 160 DIPFHLIDVGGQR------S----ERKXWVSFFS---DVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp SCEEEEEECCSCH------H----HHHHHHTTSC---SCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred eeeeccccCCCcc------c----ccccHHHHhc---cCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 5689999999952 1 2233333443 4999999999762 0 011112 22222221
Q ss_pred cCCcEEEEeecCCCCC
Q 026112 202 SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 202 ~~~p~i~v~nK~D~~~ 217 (243)
.+.|+++++||+|+..
T Consensus 227 ~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFE 242 (340)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred CCCeEEEEEECchhhh
Confidence 3689999999999864
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.24 E-value=2.9e-06 Score=72.73 Aligned_cols=118 Identities=20% Similarity=0.222 Sum_probs=64.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccc-----ccccc-CC--CC---------ceEEEEEEE------------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-----VVRTS-DK--PG---------LTQTINFFK------------------ 135 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~-----~~~vs-~~--~g---------tT~~~~~~~------------------ 135 (243)
.+-.|+++|++||||||+++.|++... +...+ +. ++ ....+.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 455789999999999999999997421 00000 00 00 000000110
Q ss_pred --eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecC
Q 026112 136 --LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKT 213 (243)
Q Consensus 136 --~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~ 213 (243)
.+..+.++||+|..... ......+..+. +.+ ..|-.++++|+..+ ..-...++.+........+++||.
T Consensus 208 ~~~~~d~vliDtaG~~~~~--~~l~~eL~~i~-ral----~~de~llvLDa~t~--~~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETN--RNLMDEMKKIA-RVT----KPNLVIFVGDALAG--NAIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp HHHTCSEEEEEECCSCCTT--TCHHHHHHHHH-HHH----CCSEEEEEEEGGGT--THHHHHHHHHHHHSCCCEEEEECG
T ss_pred HhccchhhHHhhccchhHH--HHHHHHHHHHH-HHh----cCCCCEEEEecHHH--HHHHHHHHHHHHhcCCCEEEEeCc
Confidence 14578899999975321 11111222211 111 26889999997654 233344444443333457788999
Q ss_pred CCCC
Q 026112 214 DTVF 217 (243)
Q Consensus 214 D~~~ 217 (243)
|...
T Consensus 279 D~~a 282 (328)
T 3e70_C 279 DADA 282 (328)
T ss_dssp GGCS
T ss_pred CCcc
Confidence 9754
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=4.6e-06 Score=71.37 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=40.7
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCC-------CCCC-hhhH---HHHHHHHh----
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK-------WGVK-PRDH---ELISLMER---- 201 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~-------~~~~-~~~~---~~~~~l~~---- 201 (243)
+..+.+|||+|... +......|+. .++++++|+|.+ +... ..-. .+++.+..
T Consensus 166 ~v~l~iwDtgGQe~----------~R~~w~~yf~---~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 166 SVIFRMVDVGGQRS----------ERRKWIHCFE---NVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp TEEEEEEEECCSHH----------HHTTGGGGCS---SCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEcCCchh----------HHHHHHHHhC---CCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 56789999999521 1222233333 489999999754 1111 1112 23333322
Q ss_pred cCCcEEEEeecCCCCC
Q 026112 202 SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 202 ~~~p~i~v~nK~D~~~ 217 (243)
.+.|+++++||+|+..
T Consensus 233 ~~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLE 248 (327)
T ss_dssp TTCEEEEEEECHHHHH
T ss_pred CCceEEEEEECchhhh
Confidence 3689999999999864
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=98.17 E-value=1e-05 Score=71.95 Aligned_cols=72 Identities=19% Similarity=0.178 Sum_probs=40.3
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDT 215 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~ 215 (243)
++.+.||||||.... .+........+ .....++.+++|+|+..+ .......+.+.. ..+ .-+|+||+|.
T Consensus 183 ~~D~VIIDTpG~l~~--~~~l~~~L~~~-----~~~~~p~~vllVvda~~g--~~~~~~~~~f~~-~l~i~gvVlnK~D~ 252 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHV--DEAMMDEIKQV-----HASINPVETLFVVDAMTG--QDAANTAKAFNE-ALPLTGVVLTKVDG 252 (433)
T ss_dssp TCSEEEEECCCCCTT--CHHHHHHHHHH-----HHHSCCSEEEEEEETTBC--TTHHHHHHHHHH-HSCCCCEEEECTTS
T ss_pred CCCEEEEECCCcccc--cHHHHHHHHHH-----HHhhcCcceeEEeecchh--HHHHHHHHHHhc-cCCCeEEEEecCCC
Confidence 568999999996531 11111111111 111237889999998755 222333333332 244 3478999998
Q ss_pred CCh
Q 026112 216 VFP 218 (243)
Q Consensus 216 ~~~ 218 (243)
...
T Consensus 253 ~~~ 255 (433)
T 2xxa_A 253 DAR 255 (433)
T ss_dssp SSC
T ss_pred Ccc
Confidence 643
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.16 E-value=9e-07 Score=76.66 Aligned_cols=59 Identities=34% Similarity=0.376 Sum_probs=38.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCC---C----ceEEEEEEEeCCcEEEEeCCCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP---G----LTQTINFFKLGTKLCLVDLPGYGF 150 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~---g----tT~~~~~~~~~~~~~liDTpG~~~ 150 (243)
+-.++|+|++|||||||+|.|++.......+.+. | +|+............++||||+.+
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence 3488999999999999999999973202222221 2 444445555555567899999754
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.5e-06 Score=71.40 Aligned_cols=56 Identities=32% Similarity=0.395 Sum_probs=37.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCC-------CceEEEEEEEeCCcEEEEeCCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLTQTINFFKLGTKLCLVDLPGYG 149 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~-------gtT~~~~~~~~~~~~~liDTpG~~ 149 (243)
+..++++|++|||||||+|+|+ ... ...+.+. .+|+..........-.++||||+.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~-~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~ 227 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEE-LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFS 227 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCC-CCCSCC---------CCCCEEEEEETTTEEEESSCCCS
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hhh-CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcC
Confidence 4578999999999999999999 632 2233332 245444433333456789999986
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=98.11 E-value=4.5e-06 Score=70.80 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.|+++|++|||||||++.|.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3558899999999999999999864
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=98.10 E-value=1e-06 Score=76.37 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=41.5
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCC--------hhhH---HHHHHHHh----
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK--------PRDH---ELISLMER---- 201 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~--------~~~~---~~~~~l~~---- 201 (243)
+..+.+|||+|... .+..|. .|+ ..++++++|+|.+..-+ ..-. .+++.+..
T Consensus 192 ~~~l~iwDt~GQe~------~r~~w~----~yf---~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 192 DLHFKMFDVGGQRS------ERKKWI----HCF---EGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp TEEEEEEEECCSGG------GGGGGG----GGC---TTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeeEEEEeCCCchh------hhHHHH----HHH---hcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 56789999999643 111222 232 24899999999875211 1112 23333322
Q ss_pred cCCcEEEEeecCCCC
Q 026112 202 SQTKYQVVLTKTDTV 216 (243)
Q Consensus 202 ~~~p~i~v~nK~D~~ 216 (243)
.+.|+++|+||+|+.
T Consensus 259 ~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 259 TDTSIILFLNKKDLF 273 (353)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred cCCcEEEEEECcCch
Confidence 368999999999985
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.06 E-value=9.4e-06 Score=68.87 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=21.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+++|.+|+||||++..|.+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH
Confidence 3457899999999999999998864
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.04 E-value=3e-06 Score=71.77 Aligned_cols=58 Identities=34% Similarity=0.409 Sum_probs=36.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCC-------CceEEEEEEEeCCcEEEEeCCCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLTQTINFFKLGTKLCLVDLPGYGF 150 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~-------gtT~~~~~~~~~~~~~liDTpG~~~ 150 (243)
+-.++++|++|||||||+|+|.+... ...+.+. .+|+............++|+||+..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~-~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~ 233 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLK-LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFAN 233 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCC-CC-------------CCCSCCEEECTTSCEEESSCSSTT
T ss_pred CCeEEEECCCCCcHHHHHHHhccccc-ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCc
Confidence 45789999999999999999998732 2222222 2444333333333457899999764
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.02 E-value=5.2e-07 Score=71.78 Aligned_cols=63 Identities=19% Similarity=0.121 Sum_probs=38.3
Q ss_pred CCCCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE-eCCcEEEEeCCC
Q 026112 85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-LGTKLCLVDLPG 147 (243)
Q Consensus 85 ~~~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~-~~~~~~liDTpG 147 (243)
...+...+..|+|+|++|||||||++.|++..........+.||+...... .|..+.++|.+.
T Consensus 12 ~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~ 75 (197)
T 3ney_A 12 ENLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEE 75 (197)
T ss_dssp ----CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHH
T ss_pred ccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHH
Confidence 334445667899999999999999999998742124455666776653221 133444444443
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.99 E-value=7e-05 Score=63.90 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=21.2
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~ 114 (243)
.....|+++|.+|+||||++..|.+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455789999999999999988875
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.89 E-value=4.1e-05 Score=64.14 Aligned_cols=53 Identities=15% Similarity=0.171 Sum_probs=38.9
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHH
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV 221 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~ 221 (243)
........+|+|++|+|++.+.......+.+++ .++|.++|+||+|+.++...
T Consensus 16 ~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~~ 68 (282)
T 1puj_A 16 EVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADAAVT 68 (282)
T ss_dssp HHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCHHHH
T ss_pred HHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCHHHH
Confidence 333344559999999999987666554554544 47899999999999986443
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=5.4e-05 Score=63.87 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+++|++|+||||++..|.+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3558999999999999999998753
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00016 Score=63.95 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=20.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~ 114 (243)
...|+++|.+|+||||++..|.+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 44688999999999999998885
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0001 Score=62.23 Aligned_cols=71 Identities=13% Similarity=0.050 Sum_probs=46.7
Q ss_pred ccCccEEEEEEeCCCCC-Chhh-HHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccCC
Q 026112 172 RVSLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~-~~~~-~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi~ 243 (243)
..++|++++|+|++++. +... ..++..+...++|+++|+||+|+.++.+.. ..+.+.+.....+..++++|
T Consensus 77 ~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~-~~~~~~~~~~~~g~~~~~~S 149 (302)
T 2yv5_A 77 VANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKK-ELERWISIYRDAGYDVLKVS 149 (302)
T ss_dssp EESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHH-HHHHHHHHHHHTTCEEEECC
T ss_pred HHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccH-HHHHHHHHHHHCCCeEEEEE
Confidence 34599999999998653 3332 345556666789999999999998765321 12334444444555566654
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0005 Score=59.48 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.|+++|++|||||||++.|++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4557899999999999999999974
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00056 Score=60.77 Aligned_cols=62 Identities=19% Similarity=0.184 Sum_probs=38.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc----------------ccccccc-CCCCceEEEEEEE--------eC--CcEEEE
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ----------------WGVVRTS-DKPGLTQTINFFK--------LG--TKLCLV 143 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~----------------~~~~~vs-~~~gtT~~~~~~~--------~~--~~~~li 143 (243)
+...|+|+|.+++|||+|+|.|++. ...-.++ ....+|+.+-.+. .+ ..+.++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 4567889999999999999977631 0001111 2223555554332 12 359999
Q ss_pred eCCCCCCCc
Q 026112 144 DLPGYGFAY 152 (243)
Q Consensus 144 DTpG~~~~~ 152 (243)
||.|+.+..
T Consensus 146 DTEG~~d~~ 154 (457)
T 4ido_A 146 DTQGTFDSQ 154 (457)
T ss_dssp EECCBTCTT
T ss_pred eccCCCCcc
Confidence 999987654
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=3.8e-05 Score=59.70 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+..++|+|++|||||||++.|.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 457899999999999999999986
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00026 Score=59.68 Aligned_cols=49 Identities=18% Similarity=0.235 Sum_probs=35.8
Q ss_pred cCccEEEEEEeCCCCC-Chhh-HHHHHHHHhcCCcEEEEeecCCCCChHHH
Q 026112 173 VSLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPIDV 221 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~-~~~~-~~~~~~l~~~~~p~i~v~nK~D~~~~~~~ 221 (243)
..+|++++|+|++.+. .... ..++..+...++|+++|+||+|+.+....
T Consensus 83 ~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v 133 (301)
T 1u0l_A 83 ANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDL 133 (301)
T ss_dssp ESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHH
T ss_pred ccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchhH
Confidence 3499999999988653 2222 34555556668999999999999876543
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0011 Score=55.77 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=21.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..++++|++|+||||++..|++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3447889999999999999988863
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00034 Score=59.22 Aligned_cols=68 Identities=13% Similarity=0.076 Sum_probs=42.8
Q ss_pred ccCccEEEEEEeCCCCCChhhHHHHHHH---HhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccc
Q 026112 172 RVSLKRVCLLIDTKWGVKPRDHELISLM---ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 240 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~~~~~~~l---~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~ 240 (243)
..++|.+++|+|+..+....+ .+.+++ ...++|.++|+||+|+.++.+.....+.+.+.+...+..++
T Consensus 84 ~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~ 154 (307)
T 1t9h_A 84 ICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY 154 (307)
T ss_dssp EECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred HHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence 455999999999986544443 344444 45689999999999999875421223334444443343333
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=7.2e-05 Score=59.12 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=21.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+..++|+|++|||||||++.|++.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347899999999999999999985
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.36 E-value=9.2e-05 Score=57.66 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=21.3
Q ss_pred EEEEecCCCCchhHHHHHHhccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~ 116 (243)
+++++|++|||||||++.|++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999874
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=8.1e-05 Score=61.66 Aligned_cols=50 Identities=10% Similarity=0.026 Sum_probs=35.4
Q ss_pred cCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHH
Q 026112 173 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAM 226 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~ 226 (243)
..+|+|++|+|++.+.......+. ++ ++|.++|+||+|+.++.......+
T Consensus 20 ~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~~~~~~~~~~ 69 (262)
T 3cnl_A 20 RLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIADEKTTKKWVE 69 (262)
T ss_dssp TTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSCHHHHHHHHH
T ss_pred hhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCCHHHHHHHHH
Confidence 449999999999876555432222 22 899999999999998654433333
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00014 Score=57.71 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|++..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45578999999999999999999863
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00015 Score=57.01 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+..++|+|++|||||||++.|++.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 457899999999999999999986
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0001 Score=57.89 Aligned_cols=37 Identities=27% Similarity=0.288 Sum_probs=26.2
Q ss_pred EEEecCCCCchhHHHHHHhcccccccccCCCCceEEE
Q 026112 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI 131 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~ 131 (243)
|+|+|++|||||||++.|+........-..+-|||..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 7899999999999999998763212333445556543
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00016 Score=57.44 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+..|+|+|++|||||||++.|++..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35678999999999999999999874
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0015 Score=51.06 Aligned_cols=64 Identities=9% Similarity=-0.053 Sum_probs=43.3
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhc-----CCcEEEEee
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLT 211 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~-----~~p~i~v~n 211 (243)
.+.+.++|||+... .. ....+.. +|.+++++..+..- ..-..+++.+... +.++.+|+|
T Consensus 75 ~yD~viiD~~~~~~----~~----~~~~l~~-------ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N 138 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS----VI----TSAAVMV-------SDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLIT 138 (206)
T ss_dssp TSSEEEEECCSSSS----HH----HHHHHHH-------CSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEEC
T ss_pred CCCEEEEECCCCCC----HH----HHHHHHH-------CCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 46899999999642 10 0111211 89999999877544 4455667777654 357899999
Q ss_pred cCCCC
Q 026112 212 KTDTV 216 (243)
Q Consensus 212 K~D~~ 216 (243)
++|..
T Consensus 139 ~~~~~ 143 (206)
T 4dzz_A 139 RKIEM 143 (206)
T ss_dssp SBCTT
T ss_pred ccCCC
Confidence 99964
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00017 Score=58.07 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=23.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|++..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45688999999999999999999873
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00016 Score=58.08 Aligned_cols=26 Identities=23% Similarity=0.558 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|++..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45578999999999999999999863
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00016 Score=57.37 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+|+|++|||||||++.|.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999986
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0002 Score=58.23 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45589999999999999999999863
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0002 Score=55.66 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+++|++|||||||++.|++.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3457899999999999999999886
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0004 Score=60.30 Aligned_cols=71 Identities=8% Similarity=-0.119 Sum_probs=41.1
Q ss_pred HHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHH-HHHHHHHHHHHHhhCCC
Q 026112 162 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNS 237 (243)
Q Consensus 162 ~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~-~~~~~~~l~~~l~~~~~ 237 (243)
..++..+... ++++++|+|+++.......++.+.+. +.|+++|+||+|+.+... .....+.++..+...+.
T Consensus 62 ~~~L~~~~~~---~~lil~VvD~~d~~~s~~~~l~~~l~--~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~ 133 (369)
T 3ec1_A 62 LSMLHRIGES---KALVVNIVDIFDFNGSFIPGLPRFAA--DNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGL 133 (369)
T ss_dssp HHHHHHHHHH---CCEEEEEEETTCSGGGCCSSHHHHCT--TSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHhhcc---CcEEEEEEECCCCCCchhhHHHHHhC--CCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCC
Confidence 3444444333 78999999998653222223333322 689999999999986532 12223334444555444
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00023 Score=57.49 Aligned_cols=26 Identities=27% Similarity=0.203 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999999863
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00028 Score=53.84 Aligned_cols=25 Identities=12% Similarity=0.256 Sum_probs=22.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|+.|||||||++.|++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999999999986
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0003 Score=57.26 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=23.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|+|..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45589999999999999999999973
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0022 Score=50.86 Aligned_cols=66 Identities=6% Similarity=0.010 Sum_probs=42.0
Q ss_pred CCcEEEEeCCCC-CCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhc-CCcEEEEeecCC
Q 026112 137 GTKLCLVDLPGY-GFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-QTKYQVVLTKTD 214 (243)
Q Consensus 137 ~~~~~liDTpG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~-~~p~i~v~nK~D 214 (243)
.+.+.++|||+. ... . ....+. .+|.+++++..+..-......+++.+... +.++.+|+|++|
T Consensus 67 ~yD~viiD~p~~~~~~---~---------~~~~l~---~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~ 131 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE---D---------LEALAD---GCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIP 131 (209)
T ss_dssp GCSEEEEEEECCCSSS---H---------HHHHHH---TSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBC
T ss_pred cCCEEEEeCCCCcCcH---H---------HHHHHH---HCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecC
Confidence 468999999996 431 1 111111 28999999876532112223556666653 678999999999
Q ss_pred CCC
Q 026112 215 TVF 217 (243)
Q Consensus 215 ~~~ 217 (243)
...
T Consensus 132 ~~~ 134 (209)
T 3cwq_A 132 PYP 134 (209)
T ss_dssp CTT
T ss_pred Ccc
Confidence 764
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00032 Score=58.04 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=22.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|+|-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45588999999999999999999963
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00056 Score=59.38 Aligned_cols=52 Identities=13% Similarity=0.059 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHh--cCCcEEEEeecCCCCChH
Q 026112 161 WEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER--SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 161 ~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~--~~~p~i~v~nK~D~~~~~ 219 (243)
+..++..+... ++++++|+|+++. ...+...+.. .+.|+++|+||+|+.+..
T Consensus 59 f~~~l~~i~~~---~~~il~VvD~~d~----~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~ 112 (368)
T 3h2y_A 59 FLRILNGIGKS---DALVVKIVDIFDF----NGSWLPGLHRFVGNNKVLLVGNKADLIPKS 112 (368)
T ss_dssp HHHHHHHHHHS---CCEEEEEEETTSH----HHHCCTTHHHHSSSSCEEEEEECGGGSCTT
T ss_pred HHHHHHHHhcc---CcEEEEEEECCCC----cccHHHHHHHHhCCCcEEEEEEChhcCCcc
Confidence 44455555443 7899999999753 1222222222 268999999999998653
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0002 Score=62.06 Aligned_cols=67 Identities=18% Similarity=0.139 Sum_probs=39.3
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCC--------Chhh---HHHHHHHHh----
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--------KPRD---HELISLMER---- 201 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~--------~~~~---~~~~~~l~~---- 201 (243)
+..+.+|||+|... . ......|+ ..++++++|+|.+.-- .... ..+++.+..
T Consensus 200 ~~~l~i~Dt~Gq~~------~----r~~w~~~f---~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 200 NVPFKMVDVGGQRS------E----RKRWFECF---DSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp TEEEEEEEECC-----------------CTTSC---TTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeEEEEEeccchhh------h----hhhHHHHh---CCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 56789999999632 1 11222222 3489999999987510 0111 223333322
Q ss_pred cCCcEEEEeecCCCC
Q 026112 202 SQTKYQVVLTKTDTV 216 (243)
Q Consensus 202 ~~~p~i~v~nK~D~~ 216 (243)
.+.|+++|+||+|+.
T Consensus 267 ~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 267 SNVSIILFLNKTDLL 281 (362)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred CCCCEEEEEEChhhh
Confidence 368999999999986
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0003 Score=57.45 Aligned_cols=23 Identities=22% Similarity=0.305 Sum_probs=21.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
-.++++|++|||||||++.|+|-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999986
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00031 Score=55.61 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+|+|++|||||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999986
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00033 Score=57.22 Aligned_cols=25 Identities=44% Similarity=0.514 Sum_probs=22.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|++|||||||++.|+|-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4558899999999999999999986
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00038 Score=57.66 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|+|-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45588999999999999999999963
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00031 Score=57.88 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=22.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45588999999999999999999863
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0004 Score=54.52 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=22.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+|+|++||||||+++.|.+.
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3458999999999999999999886
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00032 Score=58.47 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++|+|++|||||||++.|+|-
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3458899999999999999999996
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00039 Score=57.39 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|+|-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45589999999999999999999973
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0004 Score=57.28 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|+|-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45588999999999999999999973
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00034 Score=56.67 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|..
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34588999999999999999999973
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00033 Score=58.10 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=22.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|++|||||||++.|+|-
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3558899999999999999999996
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00034 Score=57.35 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=22.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|+|-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34588999999999999999999973
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00031 Score=56.39 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=22.3
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
+-.++++|++|||||||++.|+|-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4478999999999999999999963
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00029 Score=61.87 Aligned_cols=68 Identities=10% Similarity=0.069 Sum_probs=41.7
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC-------C-Chhh---HHHHHHHHh----
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------V-KPRD---HELISLMER---- 201 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-------~-~~~~---~~~~~~l~~---- 201 (243)
+..+.+|||+|... . ......|+. .++++++|+|.+.- . .... ..+++.+..
T Consensus 216 ~v~l~iwDtaGQe~------~----r~~w~~yf~---~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~ 282 (402)
T 1azs_C 216 KVNFHMFDVGGQRD------E----RRKWIQCFN---DVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 282 (402)
T ss_dssp TEEEEEEEECCSGG------G----GGGGGGGTT---TCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTC
T ss_pred Cccceecccchhhh------h----hhhhHhhcc---CCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccC
Confidence 56789999999643 1 112223333 38999999998750 0 1111 233333332
Q ss_pred cCCcEEEEeecCCCCC
Q 026112 202 SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 202 ~~~p~i~v~nK~D~~~ 217 (243)
.+.|+++|+||+|+..
T Consensus 283 ~~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 283 RTISVILFLNKQDLLA 298 (402)
T ss_dssp SSCCEEEEEECHHHHH
T ss_pred CCCeEEEEEEChhhhh
Confidence 2579999999999853
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00032 Score=55.98 Aligned_cols=24 Identities=21% Similarity=0.077 Sum_probs=21.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+-.++++|++|||||||++.|++.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999986
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00026 Score=61.14 Aligned_cols=67 Identities=19% Similarity=0.186 Sum_probs=39.6
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCC-------C-CChhhH---HHHHHHHh----
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-------G-VKPRDH---ELISLMER---- 201 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~-------~-~~~~~~---~~~~~l~~---- 201 (243)
...+.+|||+|...- ......|+. .++++++|+|.+. . -..... .+++.+..
T Consensus 182 ~v~l~iwDtaGQe~~----------r~~~~~y~~---~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~ 248 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNE----------RRKWIHLFE---GVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 248 (354)
T ss_dssp --EEEEEEECCSTTG----------GGGTGGGCT---TEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGG
T ss_pred ceeeEEEECCCchhh----------hHHHHHHhC---CCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcccc
Confidence 357999999996431 112222332 3899999999751 1 111112 23333322
Q ss_pred cCCcEEEEeecCCCC
Q 026112 202 SQTKYQVVLTKTDTV 216 (243)
Q Consensus 202 ~~~p~i~v~nK~D~~ 216 (243)
.+.|+++|+||+|+.
T Consensus 249 ~~~piiLvgNK~DL~ 263 (354)
T 2xtz_A 249 EKTSFMLFLNKFDIF 263 (354)
T ss_dssp SSCEEEEEEECHHHH
T ss_pred CCCeEEEEEECcchh
Confidence 368999999999985
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00043 Score=57.55 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|+|-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45588999999999999999999963
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00031 Score=54.01 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=19.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~ 114 (243)
+-.++++|++|||||||++.+.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 45789999999999999997654
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00042 Score=58.63 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=22.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++|+|++|+|||||++.|++-
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 4568999999999999999999975
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00044 Score=57.32 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=22.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++|+|++|||||||++.|+|-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4558899999999999999999996
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00037 Score=56.82 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34588999999999999999999963
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00039 Score=57.50 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+-.++|+|++|||||||++.|++.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh
Confidence 458999999999999999999986
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00044 Score=54.40 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=22.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+|+|++|||||||++.|.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999874
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0004 Score=56.99 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=22.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|..
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34578999999999999999999973
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00042 Score=56.87 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=22.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|++|||||||++.|+|-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458899999999999999999995
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00049 Score=56.99 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45588999999999999999999863
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00046 Score=52.65 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=21.3
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+++|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999886
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00057 Score=52.36 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+++|++||||||+.+.|.+.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3557899999999999999999764
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00045 Score=57.68 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|+|..
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34588999999999999999999963
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0004 Score=58.79 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=23.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|++-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 45689999999999999999999863
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00058 Score=52.94 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=22.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+.++|+|++|+|||||++.|++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 568999999999999999999975
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00048 Score=56.68 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999999973
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00043 Score=55.74 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=17.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHh-cc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALT-RQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~-~~ 115 (243)
.+..++|+|++|||||||++.|. +.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 45689999999999999999999 65
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00059 Score=53.87 Aligned_cols=25 Identities=24% Similarity=0.594 Sum_probs=22.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+|+|++|||||||.+.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3567899999999999999999875
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00059 Score=52.98 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=20.0
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.++++|++|||||||++.|.+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 5789999999999999999864
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00062 Score=57.77 Aligned_cols=26 Identities=35% Similarity=0.326 Sum_probs=23.2
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..+..|+|+|++|||||||++.|.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 35668999999999999999999986
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00069 Score=56.89 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=23.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|+|..
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45589999999999999999999973
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00066 Score=53.38 Aligned_cols=25 Identities=32% Similarity=0.254 Sum_probs=22.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+|+|++||||||+.+.|.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999886
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0006 Score=53.56 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=20.7
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.++++|++|+|||||++.|++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999999986
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00037 Score=53.91 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=21.3
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+|+|++|||||||++.|.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999986
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0053 Score=50.36 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.3
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+.|+++|.|||||||+.+.|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999999864
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0008 Score=55.66 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=22.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+-.++++|++|||||||++.|+|.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 458899999999999999999987
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0086 Score=48.82 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=22.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....|+++|.|||||||+.+.|...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999999999876
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00084 Score=58.14 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|.+-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 45588999999999999999999963
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00087 Score=54.48 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=20.4
Q ss_pred CCEEEEecCCCCchhHHHHHHh
Q 026112 92 LPEIAFAGRSNVGKSSMLNALT 113 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~ 113 (243)
...|+|+|++|||||||++.|+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999999
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00086 Score=57.95 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34578999999999999999999963
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00085 Score=54.57 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+|+|++|||||||++.|.+.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999885
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0017 Score=54.74 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|++|||||||++.|++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4558899999999999999999974
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0086 Score=54.15 Aligned_cols=24 Identities=13% Similarity=0.356 Sum_probs=21.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...++|.|++|+||||+..++...
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999876
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00081 Score=58.19 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=22.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
+-.++|+|++|||||||+++|++..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4589999999999999999999863
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.001 Score=57.52 Aligned_cols=26 Identities=31% Similarity=0.370 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 34578999999999999999999963
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0096 Score=52.74 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=21.7
Q ss_pred CEEEEecCCCCchhHHHHHHhccc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.-|++.|+||+|||+|..++++..
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999999999873
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00089 Score=53.33 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=21.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+-.++|+|++|||||||++.|++.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 447899999999999999999984
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0011 Score=57.47 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34578999999999999999999963
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00092 Score=51.49 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+..++++|++|+|||||++++++.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999886
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00086 Score=57.94 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=20.8
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.|+|+|++|||||||+++|++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 8999999999999999999885
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.001 Score=53.09 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=21.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+|+|++||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0011 Score=57.76 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 34578999999999999999999963
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.001 Score=50.09 Aligned_cols=24 Identities=33% Similarity=0.288 Sum_probs=22.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+..++++|++|+|||||++++.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999986
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00093 Score=57.11 Aligned_cols=24 Identities=13% Similarity=0.351 Sum_probs=21.9
Q ss_pred CEEEEecCCCCchhHHHHHHhccc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
-.++++|++|||||||+++|++..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999873
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00074 Score=57.33 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=22.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+.++|+|+.|||||||+|.|++.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 568899999999999999999975
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00096 Score=57.59 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=22.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34578999999999999999999863
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.025 Score=47.89 Aligned_cols=25 Identities=8% Similarity=0.090 Sum_probs=22.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..+.+.|.|+||+|||++++.++..
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999876
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0012 Score=57.38 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34578999999999999999999863
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0013 Score=51.68 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=22.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+++|++||||||+.+.|.+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999864
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0012 Score=50.00 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=18.8
Q ss_pred CEEEEecCCCCchhHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNAL 112 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L 112 (243)
+.|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.025 Score=49.98 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=21.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.-|++.|+||+|||+|..++++.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999987
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.025 Score=46.35 Aligned_cols=24 Identities=17% Similarity=0.437 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...++|.|+||+|||+|..++...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 457899999999999999999876
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0012 Score=50.00 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+|+|.+||||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999865
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00099 Score=57.36 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 34578999999999999999999963
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.011 Score=51.88 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=21.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+++|.+||||||+.+.|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456788999999999999999876
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0011 Score=57.51 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=22.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 34478999999999999999999963
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0033 Score=50.24 Aligned_cols=73 Identities=10% Similarity=0.052 Sum_probs=32.3
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCC-hhhHHH---HHHHHh----cCCcEEEEe
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-PRDHEL---ISLMER----SQTKYQVVL 210 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~-~~~~~~---~~~l~~----~~~p~i~v~ 210 (243)
++....+||-.+..+++.++..|.. |+.. +|++|||||+++.-. +...++ ...+.. .+.|++|..
T Consensus 97 k~~~~~~~~~~~~GGQ~klRplWr~----Yy~~---TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlA 169 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSRYSVIPQIQK----VCEV---VDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLS 169 (227)
T ss_dssp --------------------CCHHH----HHHH---CSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEE
T ss_pred hcccccCCCccccCcHHHHHHHHHH----HhcC---CCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEe
Confidence 5566677763222234444445544 4443 899999999876421 122233 333322 367999999
Q ss_pred ecC-CCCCh
Q 026112 211 TKT-DTVFP 218 (243)
Q Consensus 211 nK~-D~~~~ 218 (243)
||. |+...
T Consensus 170 NKqqDlp~A 178 (227)
T 3l82_B 170 CISQGDVKR 178 (227)
T ss_dssp EESSTTSCB
T ss_pred CCCcCccCC
Confidence 995 67543
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0011 Score=59.16 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=23.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..++|+|++|||||||++.|++-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 5679999999999999999999986
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0015 Score=53.49 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALT 113 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~ 113 (243)
.+..|+|+|++||||||+.+.|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999999
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0012 Score=57.41 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+-.|+|+|++|||||||+++|++.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 447999999999999999999985
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.001 Score=57.45 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
+-+++|+|++|||||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999863
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0013 Score=51.60 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.3
Q ss_pred CEEEEecCCCCchhHHHHHHhc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~ 114 (243)
..|+|+|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999987
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0013 Score=55.53 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=22.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+|+|++|||||||++.|.+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999885
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0015 Score=51.51 Aligned_cols=25 Identities=24% Similarity=0.415 Sum_probs=22.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+|+|.+||||||+.+.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999999999886
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0099 Score=51.26 Aligned_cols=67 Identities=12% Similarity=0.036 Sum_probs=40.3
Q ss_pred cCccEEEEEEeCCCCCChhhHHHHHHH---HhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 173 VSLKRVCLLIDTKWGVKPRDHELISLM---ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~~~~~~~l---~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
.++|.+++| |+..+. .....+-+++ ...++|.++|+||+|+.++... ...+.+...+...+..++++
T Consensus 129 anvD~v~iv-~a~~P~-~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~-~~~~~~~~~y~~~G~~v~~~ 198 (358)
T 2rcn_A 129 ANIDQIVIV-SAILPE-LSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGM-DFVNEQMDIYRNIGYRVLMV 198 (358)
T ss_dssp ECCCEEEEE-EESTTT-CCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHH-HHHHHHHHHHHTTTCCEEEC
T ss_pred hcCCEEEEE-EeCCCC-CCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhH-HHHHHHHHHHHhCCCcEEEE
Confidence 458888866 444332 2222333443 4568999999999999987542 22344455556666555544
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.051 Score=43.86 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+|.|+||+|||+|..++...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999876
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0015 Score=52.59 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=22.9
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..+..|+|.|..|||||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34668999999999999999999875
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0015 Score=57.04 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=22.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++|+|++|||||||++.|+|-
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 4558899999999999999999986
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0016 Score=51.11 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+|+|.+||||||+.+.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999765
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0013 Score=59.51 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=21.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
-.++|+|++|||||||+|+|++.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999986
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.00093 Score=57.65 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34578999999999999999999963
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0015 Score=51.42 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+++|.+|||||||++.|.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999874
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.002 Score=49.87 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....|+++|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999775
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0047 Score=51.59 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=21.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....|+++|+|||||||+.+.|...
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999765
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0015 Score=51.33 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+++|++||||||+.+.|.+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHC
Confidence 46899999999999999999873
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.00096 Score=59.70 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=22.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....|+++|.+|+||||+.+.|...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3458899999999999999999875
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.014 Score=51.17 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=21.5
Q ss_pred CEEEEecCCCCchhHHHHHHhccc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.-|++.|+||+|||+|..++++..
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHhh
Confidence 358999999999999999999873
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0034 Score=52.06 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=20.3
Q ss_pred EEEecCCCCchhHHHHHHhcc
Q 026112 95 IAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~ 115 (243)
++++|++|+|||||+++|++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999987
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0016 Score=57.43 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=21.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+-.|+|+|++|||||||+++|++.
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHhh
Confidence 347899999999999999999986
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0021 Score=49.13 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+++|.+||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999875
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.002 Score=49.62 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=21.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+.++|+|.+|+|||||++.|...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998864
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0019 Score=50.40 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=20.2
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.|+|+|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999874
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0021 Score=54.64 Aligned_cols=25 Identities=32% Similarity=0.248 Sum_probs=21.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....|+|+|++|||||||++.|.+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999998765
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0022 Score=49.57 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+++|.+||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999765
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.048 Score=42.29 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.0
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+++.|++|+|||+|...+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999875
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0023 Score=49.30 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=20.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+|.|.+||||||+.+.|...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999764
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0024 Score=53.56 Aligned_cols=25 Identities=24% Similarity=0.126 Sum_probs=22.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....|+|+|.+|||||||.+.|.+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998875
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0021 Score=48.99 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=19.7
Q ss_pred EEEEecCCCCchhHHHHHHhc
Q 026112 94 EIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~ 114 (243)
.|+++|.|||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 688999999999999999987
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0028 Score=48.98 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=22.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+++|.+||||||+.+.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999875
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.035 Score=48.91 Aligned_cols=24 Identities=21% Similarity=0.327 Sum_probs=21.7
Q ss_pred CEEEEecCCCCchhHHHHHHhccc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.-|++.|+||+|||+|..++++..
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHHHh
Confidence 468999999999999999999873
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.01 Score=49.51 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=20.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.-+++.|+||+|||+|..+++..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35667799999999999999886
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0026 Score=48.94 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+.|+++|.+||||||+.+.|...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999764
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0022 Score=49.50 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=20.3
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.|+|.|.+||||||+.+.|...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.003 Score=49.30 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+..|+|+|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.042 Score=48.86 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
..-|++.|+||+|||+|..++++..
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHHHHHhcc
Confidence 3468999999999999999999873
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0021 Score=49.54 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+..|+++|.+||||||+.+.|...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999853
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0023 Score=52.11 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=20.1
Q ss_pred EEEecCCCCchhHHHHHHhcc
Q 026112 95 IAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~ 115 (243)
++++|++|+|||||++++.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999986
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0026 Score=48.84 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=19.2
Q ss_pred EEEEecCCCCchhHHHHHHhc
Q 026112 94 EIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~ 114 (243)
..+|+|++|+|||||+.+|..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999875
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0027 Score=58.31 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 45689999999999999999999863
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0029 Score=57.61 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|++|||||||++.|+|.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4558999999999999999999996
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0029 Score=48.55 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+..|+++|.+||||||+.+.|.+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999875
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.003 Score=48.45 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=21.3
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+.|+++|.+|+||||+.+.|...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.003 Score=49.52 Aligned_cols=24 Identities=38% Similarity=0.292 Sum_probs=21.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+..|+|.|.+||||||+.+.|...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 357899999999999999999875
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.015 Score=48.24 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=21.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...+++.|+||+|||+|.+++.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457899999999999999999886
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.025 Score=47.75 Aligned_cols=24 Identities=29% Similarity=0.628 Sum_probs=21.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+|.|++|+|||+|..++...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 356899999999999999999765
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0035 Score=48.52 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+|+|.+||||||+.+.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999754
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0036 Score=49.19 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+|.|.+||||||+.+.|...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999864
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.003 Score=58.02 Aligned_cols=26 Identities=38% Similarity=0.570 Sum_probs=23.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|-.
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999999863
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.016 Score=51.26 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=22.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
..-|++.|+||+|||+|..++++..
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999873
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.033 Score=47.45 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=21.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....++|.|++|+|||||++.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999875
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0028 Score=56.82 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=21.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
-.++|+|++|||||||++.|++-
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 47899999999999999999974
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0031 Score=57.48 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=22.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|+.|||||||++.|+|.
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3447899999999999999999996
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.003 Score=58.24 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=23.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 45689999999999999999999864
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0036 Score=49.16 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+..|+|.|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0026 Score=58.38 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=23.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|.|..
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 45689999999999999999999864
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0038 Score=49.61 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+..|+|+|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999764
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0046 Score=48.35 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=21.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....|+|+|.+||||||+.+.|...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999764
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0033 Score=49.84 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=21.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+-.++++|++|+|||||++.|++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 447899999999999999999864
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0036 Score=49.45 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.9
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
+|+|+|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0035 Score=51.39 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+..|+|+|.+||||||+.+.|.+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999874
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0038 Score=57.65 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=23.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|+|..
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 45589999999999999999999963
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0019 Score=50.94 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.|+|.|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.014 Score=48.06 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...++|.|+||+|||+|.+++...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456999999999999999999876
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0052 Score=48.01 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=21.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....|+|+|.+||||||+.+.|...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4457899999999999999999864
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0042 Score=51.74 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=21.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++|+|++|+|||||++.|++.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999875
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0034 Score=57.74 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=23.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|++-.
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999999863
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0039 Score=53.11 Aligned_cols=23 Identities=17% Similarity=0.494 Sum_probs=21.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..++|+|++|+|||||++.+++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999986
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.004 Score=49.56 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=21.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+|+|.+||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0034 Score=51.88 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=20.1
Q ss_pred EEEecCCCCchhHHHHHHhcc
Q 026112 95 IAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~ 115 (243)
|+|+|++|+|||||+++|.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999986
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0042 Score=53.42 Aligned_cols=26 Identities=27% Similarity=0.242 Sum_probs=23.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-+++|+|++|+|||||++.|++..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999999973
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0044 Score=49.52 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+|+|.+||||||+.+.|...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999854
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0038 Score=47.69 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+|+|.+||||||+.+.|...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999875
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0043 Score=49.07 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=20.0
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
+|+|+|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0044 Score=57.24 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|++|+|||||++.|+|.
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 4558999999999999999999996
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0048 Score=48.02 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+|+|.+||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 457999999999999999999875
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0048 Score=47.88 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.8
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+++|.+||||||+.+.|...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999764
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0054 Score=46.68 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=21.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...++|.|++|+|||+|++++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999876
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0048 Score=48.75 Aligned_cols=25 Identities=32% Similarity=0.286 Sum_probs=21.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+++|.+|+||||+.+.|.+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999998775
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0045 Score=47.70 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=20.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+++|.+||||||+.+.|...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998764
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0058 Score=48.15 Aligned_cols=24 Identities=13% Similarity=-0.046 Sum_probs=21.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~ 114 (243)
.+-.++++|++|+|||||+..|++
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999987
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0044 Score=47.64 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+.|+|+|.+||||||+-+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998764
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0041 Score=53.79 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=18.4
Q ss_pred EEEEecCCCCchhHHHHHHh
Q 026112 94 EIAFAGRSNVGKSSMLNALT 113 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~ 113 (243)
..+|+|++|||||||+++|+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 56799999999999999987
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0054 Score=53.32 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..++++|++|+|||||++.|.+.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3458899999999999999999975
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0042 Score=49.37 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=21.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+|+|.+||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999764
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0054 Score=48.60 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.3
Q ss_pred CEEEEecCCCCchhHHHHHHhc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~ 114 (243)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999976
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0056 Score=46.21 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=20.0
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0055 Score=48.51 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=20.0
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
+|+|+|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.012 Score=47.85 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=21.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+++|++|+|||||.+++.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45899999999999999999876
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0058 Score=47.11 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.9
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0068 Score=46.59 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+|+|.+||||||+.+.|...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999998764
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0054 Score=45.99 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=18.2
Q ss_pred EEEEecCCCCchhHHHHHHh
Q 026112 94 EIAFAGRSNVGKSSMLNALT 113 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~ 113 (243)
..+|+|++|+||||++.+|.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 56899999999999999976
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.006 Score=49.15 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+|.|.+||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999876
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0062 Score=54.00 Aligned_cols=26 Identities=27% Similarity=0.311 Sum_probs=23.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-+++|+|++|||||||++.|++..
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45689999999999999999999973
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0061 Score=55.52 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++|+|++|||||||++.|+|.
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999996
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0057 Score=46.35 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.5
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+|+|.+||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0051 Score=47.09 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=17.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|++.|.+||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999999765
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0047 Score=62.06 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=23.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-+|+|||++|||||||++.|++-.
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCc
Confidence 45689999999999999999999864
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.006 Score=48.83 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=21.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++|+|++|+|||||+..|++.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3457899999999999999999884
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0053 Score=48.73 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEEecCCCCchhHHHHHHhccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.|+|+|+|||||+|.-..|+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998764
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.067 Score=47.45 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=21.5
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+.++|.|+||+|||||.+.|...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 58999999999999999999886
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0068 Score=49.21 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+|+|.+||||||+.+.|...
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.027 Score=54.04 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=21.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...++++|+||+|||+++..+...
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHH
Confidence 346799999999999999999886
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.079 Score=44.73 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|++.|+||+|||+|..++...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 357899999999999999999886
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.008 Score=47.74 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...++|.|++|+|||+|..++...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0066 Score=49.64 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=20.0
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.|+|+|++|||||||-+.|.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 5789999999999999999865
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.041 Score=47.65 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=21.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+|.|++|+|||+|..+++..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999776
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0072 Score=55.04 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|+.|||||||++.|+|..
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34588999999999999999999973
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.048 Score=51.50 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....++|+|+||+|||++...|...
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999875
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0012 Score=53.44 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.4
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.++|+|++|||||||+++|++.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3468899999999999999985
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.009 Score=47.97 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+|+|.+||||||+.+.|...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0084 Score=48.56 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+|.|++||||||+.+.|...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999853
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0079 Score=55.55 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=22.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
+-.++|+|+.|+|||||++.|+|..
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999999973
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.008 Score=48.90 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....|+|.|.+||||||+-+.|...
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999988764
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0083 Score=47.92 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.9
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.|+|+|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.43 E-value=0.012 Score=49.73 Aligned_cols=61 Identities=20% Similarity=0.134 Sum_probs=36.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccC--------CCCceEEEEEE-EeCCcEEEEeCCCCCCCcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSD--------KPGLTQTINFF-KLGTKLCLVDLPGYGFAYA 153 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~--------~~gtT~~~~~~-~~~~~~~liDTpG~~~~~~ 153 (243)
+.|+|+|+||+|||||...|........++. ..-+|..+... ..+.+..++|...+.+...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s 73 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFS 73 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCC
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhcc
Confidence 4688999999999999999987632211111 11122222111 1256778888877766543
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.01 Score=51.90 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=36.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccC--------CCCceEEEEEEE-eCCcEEEEeCCCCCCCc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSD--------KPGLTQTINFFK-LGTKLCLVDLPGYGFAY 152 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~--------~~gtT~~~~~~~-~~~~~~liDTpG~~~~~ 152 (243)
+.|+|+|+||+|||||...|........++. ..-+|..+.... .+.+..++|...+.+..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~ 71 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEY 71 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCC
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHh
Confidence 4688999999999999999987532122221 111222221111 25677788877766543
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0078 Score=51.20 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+.++|+|++|+||||+++++.+.
T Consensus 36 ~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 36 LPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345999999999999999999884
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.007 Score=45.97 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...++|.|++|+|||+|...+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999875
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0099 Score=47.82 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~ 114 (243)
.+..|+|+|.+|+||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999986
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.017 Score=49.66 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+|.|+||+|||+|..++...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999886
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0075 Score=55.71 Aligned_cols=24 Identities=17% Similarity=0.412 Sum_probs=21.6
Q ss_pred CEEEEecCCCCchhHHHHHHhccc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
-.++|+|++|+|||||++.|+|..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 358999999999999999999973
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0092 Score=53.29 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...++|+|+||+|||++.++|...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999875
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0084 Score=48.02 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.4
Q ss_pred CEEEEecCCCCchhHHHHHHhccc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
..|+|+|+|||||+|.-..|+...
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 456788999999999999998764
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.11 Score=49.58 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=22.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
..-|++.|+||+|||+|.+++++..
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999999873
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0036 Score=54.70 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~ 114 (243)
.+ .++|+|++|+|||||+++|..
T Consensus 60 ~G-~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 60 GG-FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp SS-EEEEEESHHHHHHHHTHHHHH
T ss_pred CC-cEEEECCCCCCHHHHHHHHHH
Confidence 45 889999999999999998854
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.01 Score=46.21 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=21.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..+++.|++|+|||+|..++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999876
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.2 Score=42.77 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=19.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+-.++|.|+||+|||||...++..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 447889999999999998777653
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.052 Score=46.08 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=19.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..+++.|+||+|||+|...+...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 35789999999999999888753
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.018 Score=48.20 Aligned_cols=73 Identities=10% Similarity=0.036 Sum_probs=35.1
Q ss_pred cEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh-HH---HHHHHHh----cCCcEEEEe
Q 026112 139 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HE---LISLMER----SQTKYQVVL 210 (243)
Q Consensus 139 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~---~~~~l~~----~~~p~i~v~ 210 (243)
++....+||-.+..+++.++..|..++.. +|++|||||+++...... .+ +...+.. .+.|++|..
T Consensus 182 k~f~~~~~~~~~~GGQ~~lRplWr~Yy~~-------tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfA 254 (312)
T 3l2o_B 182 KMFSRHNEGDDQQGSRYSVIPQIQKVCEV-------VDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLS 254 (312)
T ss_dssp ---------------CCCCCHHHHHHHHH-------CSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEE
T ss_pred hhccccCCCCcCCCCHHHHHHHHHHHhcC-------CCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEe
Confidence 34444555522222344455555554443 899999999876422111 12 2233321 478999999
Q ss_pred ec-CCCCCh
Q 026112 211 TK-TDTVFP 218 (243)
Q Consensus 211 nK-~D~~~~ 218 (243)
|| .|+...
T Consensus 255 NKkQDlp~A 263 (312)
T 3l2o_B 255 CISQGDVKR 263 (312)
T ss_dssp EESSTTSCB
T ss_pred CCcccccCC
Confidence 97 588644
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.011 Score=46.19 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+.|+|.|.+||||||+.+.|...
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999774
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.011 Score=44.69 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=20.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.-.|+|.|.+||||||+-+.|...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999764
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.037 Score=47.41 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+|.|++|+|||+|..++...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999876
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0068 Score=55.34 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|+|+|.+|||||||.+.|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 4568999999999999999999986
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=95.13 E-value=0.011 Score=48.86 Aligned_cols=25 Identities=24% Similarity=0.130 Sum_probs=21.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++|+|++|+|||||+..+++.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457899999999999999998864
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.011 Score=59.46 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=23.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|+|||||++.|++..
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred CCcEEEEEecCCCcHHHHHHHhcccc
Confidence 46689999999999999999999974
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.11 E-value=0.012 Score=50.01 Aligned_cols=23 Identities=39% Similarity=0.693 Sum_probs=20.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+.++|.|++|+||||+++++++.
T Consensus 47 ~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 47 PHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999886
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.013 Score=48.56 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~ 114 (243)
...|+|+|.+||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999974
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.011 Score=46.25 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....|+++|.+||||||+-+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999764
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.024 Score=47.09 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.8
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..++|+|++|+|||++..+|.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 46899999999999999999875
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.012 Score=59.05 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=23.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|.+..
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999874
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.013 Score=50.29 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=21.2
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+.++|.|++|+|||||++.+.+.
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999876
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=94.98 E-value=0.0088 Score=58.02 Aligned_cols=25 Identities=36% Similarity=0.504 Sum_probs=22.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++|+|++|+|||||++.|+|.
T Consensus 698 ~GeivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 698 LSSRIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp TTCEEEECSCCCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999986
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=94.96 E-value=0.014 Score=49.29 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+.|+|+|+||+|||||...|....
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3467899999999999999998763
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.029 Score=41.44 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=20.8
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|++.|++|+|||++..++...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999876
|
| >2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.091 Score=47.52 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=20.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+++|.||+||||+-+.|...
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~ 58 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRY 58 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347889999999999999999764
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.013 Score=46.13 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=18.4
Q ss_pred CEEEEecCCCCchhHHHHHHh
Q 026112 93 PEIAFAGRSNVGKSSMLNALT 113 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~ 113 (243)
...+|+|+.|+||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 366889999999999999875
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.1 Score=43.42 Aligned_cols=23 Identities=13% Similarity=0.449 Sum_probs=20.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+|.|++|+|||+|..++...
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999775
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.89 E-value=0.012 Score=46.69 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.5
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+++.|+||+||||+..+|+..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999998888764
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.016 Score=45.81 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+..|+|+|+||+|||||...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999999876
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.018 Score=47.91 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=21.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....++|.|+||+|||++..++...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4557999999999999999988775
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.021 Score=45.85 Aligned_cols=40 Identities=10% Similarity=-0.041 Sum_probs=28.5
Q ss_pred EEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 177 RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 177 ~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
.-++++|.-+-+.....+.+..+...++|++++.-..|-.
T Consensus 90 ~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~ 129 (223)
T 2b8t_A 90 TKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFK 129 (223)
T ss_dssp CCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTT
T ss_pred CCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEecccccc
Confidence 4567888665454445556666666789999999988865
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=94.85 E-value=0.013 Score=47.96 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....|+|.|.+||||||+.+.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4568899999999999999999876
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.018 Score=48.20 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|++.|+||+|||+|.+++.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 347899999999999999999986
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.018 Score=49.22 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=22.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+.|+|+|++|+|||||-..|....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3578999999999999999999864
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=94.83 E-value=0.015 Score=56.47 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=21.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++|+|++|+|||||++.|++.
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3558899999999999999999964
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.22 Score=41.61 Aligned_cols=94 Identities=17% Similarity=0.197 Sum_probs=49.5
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (243)
.+++.|++|+|||++..++..... ..+.-++....+ .+.+. ..+..+.....
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l~--------------------~~~~~i~~~~~~----~~~i~----~~~~~~~~~~~ 101 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDVN--------------------ADMMFVNGSDCK----IDFVR----GPLTNFASAAS 101 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHTT--------------------EEEEEEETTTCC----HHHHH----THHHHHHHBCC
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhC--------------------CCEEEEcccccC----HHHHH----HHHHHHHhhcc
Confidence 455667799999999999987621 123333432221 12122 22222222211
Q ss_pred -CccEEEEEEeCCCCCC-hhh-HHHHHHHHh--cCCcEEEEeecCCC
Q 026112 174 -SLKRVCLLIDTKWGVK-PRD-HELISLMER--SQTKYQVVLTKTDT 215 (243)
Q Consensus 174 -~~d~v~~vvd~~~~~~-~~~-~~~~~~l~~--~~~p~i~v~nK~D~ 215 (243)
.....++++|--+.+. ... ..++..+.. .+.++++..|..+.
T Consensus 102 ~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 102 FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 1256677888665554 332 344455544 24667777776654
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.011 Score=55.22 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.2
Q ss_pred CCEEEEecCCCCchhHHHHHHh
Q 026112 92 LPEIAFAGRSNVGKSSMLNALT 113 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~ 113 (243)
+-.++|+|++|||||||++.++
T Consensus 348 Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 348 GTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TSEEEEECSTTSSHHHHHTTTH
T ss_pred CCEEEEEeeCCCCHHHHHHHHH
Confidence 4478999999999999998765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 243 | ||||
| d1svia_ | 195 | c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti | 1e-20 | |
| d1puia_ | 188 | c.37.1.8 (A:) Probable GTPase EngB {Escherichia co | 4e-18 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 2e-12 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 5e-12 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 4e-11 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 1e-09 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 2e-07 | |
| d1egaa1 | 179 | c.37.1.8 (A:4-182) GTPase Era, N-terminal domain { | 2e-07 | |
| d1mkya1 | 171 | c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal | 2e-07 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 2e-07 | |
| d1g7sa4 | 227 | c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N- | 5e-06 | |
| d1wf3a1 | 178 | c.37.1.8 (A:3-180) GTPase Era, N-terminal domain { | 7e-06 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 8e-06 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 1e-05 | |
| d1puja_ | 273 | c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti | 3e-05 | |
| d1h65a_ | 257 | c.37.1.8 (A:) Chloroplast protein translocon GTPas | 2e-04 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 8e-04 | |
| d2c78a3 | 204 | c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N | 8e-04 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 0.003 | |
| d1jwyb_ | 306 | c.37.1.8 (B:) Dynamin G domain {Dictyostelium disc | 0.003 |
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Score = 84.0 bits (206), Expect = 1e-20
Identities = 57/161 (35%), Positives = 89/161 (55%)
Query: 73 NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
K E +A +P LPEIA AGRSNVGKSS +N+L + + RTS KPG TQT+N
Sbjct: 4 TKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLN 63
Query: 133 FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 192
F+ + +L VD+PGYGFA + ++AW +++ Y++TR LK V ++D + D
Sbjct: 64 FYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDD 123
Query: 193 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 233
++ ++ V+ TK D + + A + ++L
Sbjct: 124 VQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLN 164
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Score = 77.5 bits (189), Expect = 4e-18
Identities = 64/166 (38%), Positives = 89/166 (53%)
Query: 77 FFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL 136
F +A P+ E+AFAGRSN GKSS LN LT Q + RTS PG TQ IN F++
Sbjct: 1 FVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV 60
Query: 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI 196
LVDLPGYG+A EE+K W+ + EY+ R SL+ + +L+D + +K D ++I
Sbjct: 61 ADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMI 120
Query: 197 SLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242
S V+LTK D + + + E++ A N VQ
Sbjct: 121 EWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVE 166
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 63.6 bits (154), Expect = 2e-12
Identities = 27/158 (17%), Positives = 52/158 (32%), Gaps = 18/158 (11%)
Query: 64 ERIEENIFRNKLEFFAAAKVSSSFPAPD--LPEIAFAGRSNVGKSSMLNALTRQWGVVRT 121
IE + ++ + +S + D + +A G + GKSS +N L
Sbjct: 27 NLIELRMRAGNIQL-TNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEG 85
Query: 122 SDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLK 176
+ K G+ + + DLPG G + Y+ +
Sbjct: 86 AAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPD----------TYLEKMKFYE 135
Query: 177 RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 214
+I + K D ++ + + ++ V TK D
Sbjct: 136 YDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVD 173
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 60.5 bits (145), Expect = 5e-12
Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 16/162 (9%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
I FAGRSNVGKS+++ LT + VR +PG+T+ I + +
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLP 60
Query: 155 EEVKDAWEELVKEYVSTRVSLKRVCLLI------------DTKWGVKPRDHELISLMERS 202
+EV++ ++ + ++ V +L+ K G P D E +
Sbjct: 61 KEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL 120
Query: 203 QTKYQVVLTKTDTV--FPIDVARRAMQIEESLKANNSLVQPV 242
V + K D + + A + E L + + P+
Sbjct: 121 DIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPI 162
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 58.1 bits (139), Expect = 4e-11
Identities = 27/145 (18%), Positives = 48/145 (33%), Gaps = 11/145 (7%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPG 147
+ ++ G N GKSS+L A+TR + + P T + N + L D+PG
Sbjct: 1 IADVGLVGYPNAGKSSLLAAMTRAH--PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPG 58
Query: 148 YGFAYAKEE--VKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK 205
++ + + + + V V L + K +L+ R
Sbjct: 59 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLV 118
Query: 206 YQVVLTKTDTVFPIDVARRAMQIEE 230
K D + V A +
Sbjct: 119 AL---NKVDLLEEEAVKALADALAR 140
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 54.2 bits (129), Expect = 1e-09
Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPG 147
L ++ G +VGKS++L+ ++ + +D T N G + DLP
Sbjct: 1 LADVGLVGFPSVGKSTLLSVVSSAK--PKIADYHFTTLVPNLGMVETDDGRSFVMADLP- 57
Query: 148 YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186
G + + ++ TRV + + +
Sbjct: 58 -GLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGR 95
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 47.3 bits (111), Expect = 2e-07
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 10/104 (9%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFA 151
+ G+ NVGKS++LN L + +D PG T+ + ++ G +VD G
Sbjct: 3 MVIVGKPNVGKSTLLNRLLNE-DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGV--- 58
Query: 152 YAKEEVKDAWEE-LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE 194
+ E D E ++ + V ++D + D +
Sbjct: 59 --RSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK 100
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 47.8 bits (112), Expect = 2e-07
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ 129
IA GR NVGKS++LN L Q + TS K T+
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQK-ISITSRKAQTTR 41
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 47.1 bits (110), Expect = 2e-07
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF 134
+ GR NVGKS++ N L ++ D+ G+T+
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKK-KAIVEDEEGVTRDPVQD 41
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 47.4 bits (111), Expect = 2e-07
Identities = 37/160 (23%), Positives = 58/160 (36%), Gaps = 8/160 (5%)
Query: 90 PDLPE---IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLV 143
P++ + +A GR NVGKS++ NA+ + S PG T+ ++ G K V
Sbjct: 3 PEITDAIKVAIVGRPNVGKSTLFNAILNKE-RALVSPIPGTTRDPVDDEVFIDGRKYVFV 61
Query: 144 DLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ 203
D G E + S V +++D G+ +D + LMER
Sbjct: 62 DTAGLRRKSRVEPRTVEKYSNYRVVDSIE-KADVVVIVLDATQGITRQDQRMAGLMERRG 120
Query: 204 TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243
VV K D V + K P++
Sbjct: 121 RASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI 160
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 43.9 bits (102), Expect = 5e-06
Identities = 23/152 (15%), Positives = 51/152 (33%), Gaps = 11/152 (7%)
Query: 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152
P ++ G + GK+++L+ + R + G+TQ I ++ + + +
Sbjct: 6 PIVSVLGHVDHGKTTLLDHIRGSAVASR--EAGGITQHIGATEIPMDVIEGICGDFLKKF 63
Query: 153 AKEEVK--------DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT 204
+ E E L++D G KP+ E ++++ +T
Sbjct: 64 SIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRT 123
Query: 205 KYQVVLTKTDTVFPIDVARRAMQIEESLKANN 236
+ V K D + E+ +
Sbjct: 124 PFVVAANKIDRIHG-WRVHEGRPFMETFSKQD 154
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 43.2 bits (100), Expect = 7e-06
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG 126
+A G+ NVGKS++LN L V S +P
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGVK-VAPISPRPQ 38
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.1 bits (100), Expect = 8e-06
Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 13/145 (8%)
Query: 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152
P I AG N GK+S+L LT S +P + V L +
Sbjct: 4 PSIIIAGPQNSGKTSLLTLLTTD------SVRPTVVSQEPLSAADYDGSGVTLVDFPGHV 57
Query: 153 AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-----GVKPRDHELISLMERSQTKYQ 207
+ L + + V +D K + +
Sbjct: 58 KLR--YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 115
Query: 208 VVLTKTDTVFPIDVARRAMQIEESL 232
+ K++ ++ +E +
Sbjct: 116 IACNKSELFTARPPSKIKDALESEI 140
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 42.4 bits (98), Expect = 1e-05
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF 134
+ AGR N GKSS+LNAL + +D G T+ +
Sbjct: 4 VVIAGRPNAGKSSLLNALAGR-EAAIVTDIAGTTRDVLRE 42
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Score = 41.7 bits (97), Expect = 3e-05
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
G NVGKS+++N L ++ + +T D+PG+T + + K+G +L L+D PG + +
Sbjct: 115 ALIIGIPNVGKSTLINRLAKKN-IAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFE 173
Query: 155 EE 156
+E
Sbjct: 174 DE 175
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 39.4 bits (91), Expect = 2e-04
Identities = 22/151 (14%), Positives = 44/151 (29%), Gaps = 6/151 (3%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
I G+ VGKSS +N++ + VV S +++
Sbjct: 35 ILVMGKGGVGKSSTVNSIIGE-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG 93
Query: 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-----VV 209
+ D ++K ++ + + + + V D + + S K V
Sbjct: 94 GYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVA 153
Query: 210 LTKTDTVFPIDVARRAMQIEESLKANNSLVQ 240
LT P + + S +
Sbjct: 154 LTHAQFSPPDGLPYDEFFSKRSEALLQVVRS 184
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.3 bits (85), Expect = 8e-04
Identities = 18/143 (12%), Positives = 39/143 (27%), Gaps = 13/143 (9%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
+ F G + GK+ + L + +T + +K+ +
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTG---QYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHES 59
Query: 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-----VV 209
+ + S+ ++ V + VK L ++ S +
Sbjct: 60 LRFQLLD-----RFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIA 114
Query: 210 LTKTDTVFPIDVARRAMQIEESL 232
K D Q+E+ L
Sbjct: 115 CNKQDIAMAKSAKLIQQQLEKEL 137
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Score = 36.9 bits (85), Expect = 8e-04
Identities = 26/162 (16%), Positives = 51/162 (31%), Gaps = 33/162 (20%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDK---------------PGLTQTINFFKL--- 136
+ G + GK+++ ALT + + G+T +
Sbjct: 6 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA 65
Query: 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI 196
VD PG+ + +K ++ + L++ G P+ E I
Sbjct: 66 KRHYSHVDCPGH-------------ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 112
Query: 197 SLMERSQTKYQV-VLTKTDTVFPIDVARRA-MQIEESLKANN 236
L + Y V + K D V ++ M++ + L
Sbjct: 113 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 154
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.2 bits (80), Expect = 0.003
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL---TQTINFFKLGTKLCLVDLPG 147
I G S+VGK+S L G+ +TI KL + D G
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 63
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} Length = 306 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Score = 35.6 bits (81), Expect = 0.003
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115
DLP+I G + GKSS+L + +
Sbjct: 23 DLPQIVVVGSQSSGKSSVLENIVGR 47
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 243 | |||
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.92 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.89 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.87 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.84 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.83 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.83 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.82 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.81 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.79 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.79 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.78 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.77 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.77 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.76 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.76 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.74 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.74 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.73 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.72 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.72 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.69 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.68 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.67 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.66 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.66 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.64 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.63 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.62 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.62 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.61 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.6 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.6 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.59 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.59 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.59 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.58 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.58 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.58 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.58 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.58 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.57 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.57 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.57 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.57 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.57 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.55 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.55 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.55 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.54 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.54 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.54 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.54 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.54 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.53 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.53 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.53 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.53 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.52 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.51 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 99.5 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.5 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.5 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.5 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.5 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.5 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.49 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.49 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.49 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.48 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.48 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.48 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.48 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.46 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.46 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.46 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 99.46 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 99.45 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.45 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.44 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 99.44 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 99.41 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.4 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.38 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.38 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.23 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.15 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.14 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.05 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 99.05 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 98.93 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 98.93 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 98.89 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.87 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 98.5 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 98.46 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 98.42 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 98.35 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 98.34 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 98.24 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 98.23 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 98.23 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 98.02 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 97.95 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 97.74 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.72 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.62 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.62 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.35 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.33 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.32 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.28 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.24 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.24 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 97.15 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 97.14 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 97.12 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 97.12 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 97.12 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.11 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.1 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 97.1 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 97.09 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.06 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 97.06 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 97.05 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.05 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.03 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 97.03 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.97 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.96 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 96.96 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.95 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 96.94 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 96.94 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 96.94 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 96.93 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 96.93 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.93 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 96.92 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 96.92 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.86 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 96.85 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 96.85 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.82 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.82 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.81 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.8 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 96.77 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.75 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 96.75 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 96.75 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.73 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.71 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.67 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.66 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.64 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.63 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.58 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.57 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.54 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.52 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.51 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.5 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.5 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.49 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.49 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.49 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.42 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.41 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.38 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.37 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.35 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.31 | |
| d1xzpa1 | 173 | TrmE connector domain {Thermotoga maritima [TaxId: | 96.27 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.22 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.15 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.12 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.07 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.99 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.96 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.96 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.93 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.8 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.78 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.74 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 95.64 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.56 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.53 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.52 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.51 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.51 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.4 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.21 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.2 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.13 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 95.08 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.02 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 94.98 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.91 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.87 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.75 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 94.69 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.65 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.6 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 94.53 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 94.49 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 94.49 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 94.47 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 94.45 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.38 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.26 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.21 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.19 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.16 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.07 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 94.03 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.02 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 93.99 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.99 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.9 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 93.85 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 93.7 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.41 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 93.4 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 93.26 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 93.21 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 92.91 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 92.87 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 92.69 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 92.56 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 92.13 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 92.0 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 91.91 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 91.75 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 91.74 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 91.26 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 91.03 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 91.02 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 90.9 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 90.86 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 90.84 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 90.63 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 90.58 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 90.49 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 90.48 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 90.26 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 89.88 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 89.47 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 89.21 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 88.21 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 88.04 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 87.42 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 86.87 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 86.61 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 85.83 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 83.78 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 83.75 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 82.05 |
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.92 E-value=6.1e-25 Score=174.02 Aligned_cols=164 Identities=34% Similarity=0.560 Sum_probs=122.0
Q ss_pred hhcccCCCCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHH
Q 026112 80 AAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKD 159 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~ 159 (243)
++....+.|..+.|+|+|+|+||||||||+|+|++....+.++..+++|.+.........+.++|++|++..........
T Consensus 11 ~~~~~~~~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 90 (195)
T d1svia_ 11 SAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSERE 90 (195)
T ss_dssp EESSGGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHH
T ss_pred ecCChhHCCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccccceEEEEEeeccccccccccc
Confidence 34455667888889999999999999999999999755567888999999988888888899999999876544443333
Q ss_pred HHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCC-c
Q 026112 160 AWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS-L 238 (243)
Q Consensus 160 ~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~-~ 238 (243)
....+...+......+|++++|+|+++++...+.++++.+...++|+++|+||+|+..+.+..+....+++.+..... .
T Consensus 91 ~~~~~~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~ 170 (195)
T d1svia_ 91 AWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDE 170 (195)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSE
T ss_pred hhhhHHhhhhccccchhhhhhhhhccccccccccccccccccccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCC
Confidence 344555666666667899999999998898999999999999999999999999999888888888888887765433 4
Q ss_pred cccCC
Q 026112 239 VQPVV 243 (243)
Q Consensus 239 ~~pi~ 243 (243)
++|++
T Consensus 171 ~~~~S 175 (195)
T d1svia_ 171 LILFS 175 (195)
T ss_dssp EEECC
T ss_pred EEEEe
Confidence 55654
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.89 E-value=5e-23 Score=160.89 Aligned_cols=123 Identities=30% Similarity=0.502 Sum_probs=92.6
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCcc-chHHHHHHHH-HHHHHHhc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA-KEEVKDAWEE-LVKEYVST 171 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~-~~~~~~~~~~-~~~~~~~~ 171 (243)
.|+|+|+||||||||+|+|++. + ..++++||+|++...+.. ..+.++||||++.... .....+.+.. +...+...
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~-~-~~~~~~~g~T~~~~~~~~-~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK-K-VRRGKRPGVTRKIIEIEW-KNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 78 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC-C-CSSSSSTTCTTSCEEEEE-TTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC-C-ceeeCCCCEeeccccccc-ccceecccCCceeccccccccccccchhhhhhhhhc
Confidence 6899999999999999999998 4 568999999999876554 4588999999865432 2222233322 23333344
Q ss_pred ccCccEEEEEEeCCC-----------CCChhhHHHHHHHHhcCCcEEEEeecCCCCChH
Q 026112 172 RVSLKRVCLLIDTKW-----------GVKPRDHELISLMERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~-----------~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~ 219 (243)
...+|++++|+|+.. +....+.++++.+...++|+++|+||+|+....
T Consensus 79 ~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~~~ 137 (184)
T d2cxxa1 79 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV 137 (184)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH
T ss_pred ccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeehhhhH
Confidence 456899999999852 455667788888888899999999999988654
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.87 E-value=7.1e-22 Score=153.97 Aligned_cols=121 Identities=22% Similarity=0.210 Sum_probs=94.2
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
+.|+++|.+|+|||||+|+|++. +...++..+++|++..... .+..+.++||||+....... . ..+...+.
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~~-~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~--~---~~~~~~~~ 79 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLGV-KVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDAL--G---EFMDQEVY 79 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHH--H---HHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCC-CceeecccCCcccccccceeeeeeeeeeeccccccccccccc--c---hhcccccc
Confidence 47999999999999999999998 5677889999998765433 36789999999987642221 1 22233344
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhc--CCcEEEEeecCCCCChH
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~--~~p~i~v~nK~D~~~~~ 219 (243)
.....+|++++|+|++.+....+..+.+.++.. +.|+++|+||+|+....
T Consensus 80 ~~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~~~ 131 (178)
T d1wf3a1 80 EALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYP 131 (178)
T ss_dssp HHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSH
T ss_pred cccccccceeeeechhhhhcccccchhhheeccccchhhhhhhcccccccCH
Confidence 445569999999999988888888888888654 67999999999998754
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.84 E-value=2.4e-20 Score=145.61 Aligned_cols=137 Identities=26% Similarity=0.379 Sum_probs=93.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccC------CCCceEEE---EEEEeCCcEEEEeCCCCCCCccchHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSD------KPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~------~~gtT~~~---~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~ 163 (243)
.+|+++|+||||||||+|+|++.. .....+ ..|.|.+. .+...+..+.++||||+. .
T Consensus 6 inIaiiG~~naGKSTL~n~L~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~-------------~ 71 (179)
T d1wb1a4 6 INLGIFGHIDHGKTTLSKVLTEIA-STSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA-------------D 71 (179)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC---------------------CCCEEEETTEEEEECCCSSHH-------------H
T ss_pred EEEEEEeCCCCcHHHHHHHHHHhc-CceecccccceeeeeeeccccccccccCCcccccccccccc-------------c
Confidence 589999999999999999999762 222222 22333332 222236678999999952 2
Q ss_pred HHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhC----CCcc
Q 026112 164 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN----NSLV 239 (243)
Q Consensus 164 ~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~----~~~~ 239 (243)
+..........+|++++|+|+..+..+++.++...+...++|+++|+||+|+...++.......++..+... ..++
T Consensus 72 ~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 151 (179)
T d1wb1a4 72 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 151 (179)
T ss_dssp HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred cccchhhhhhhccccccccccccccchhhhhhhhhhhhcCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeE
Confidence 333334445569999999999999888888899999999999999999999998876555444444444332 2355
Q ss_pred ccCC
Q 026112 240 QPVV 243 (243)
Q Consensus 240 ~pi~ 243 (243)
+|||
T Consensus 152 v~iS 155 (179)
T d1wb1a4 152 IPIS 155 (179)
T ss_dssp EECC
T ss_pred EEEE
Confidence 6665
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=1.2e-20 Score=145.85 Aligned_cols=120 Identities=22% Similarity=0.275 Sum_probs=80.9
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
+|+++|++|||||||+|+|++. ....++..+++|+...... .+..+.++||||+........ .. .....+..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~-~~---~~~~~~~~ 76 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK-KKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDII-SQ---KMKEVTLN 76 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCC-CH---HHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC-CcceecccCceeeccccccccccccccccccccceeeeecccc-cc---cccccccc
Confidence 6899999999999999999998 5567888999988754332 356799999999865432211 11 11222222
Q ss_pred cccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~ 218 (243)
....+|++++++|++.+....+..+++.+...++|+++|+||+|+...
T Consensus 77 ~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~~~ 124 (171)
T d1mkya1 77 MIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE 124 (171)
T ss_dssp HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH
T ss_pred ccccCcEEEEeecccccccccccccccccccccccccccchhhhhhhh
Confidence 334589999999999888888889999999999999999999999754
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.83 E-value=8.6e-21 Score=147.93 Aligned_cols=139 Identities=22% Similarity=0.224 Sum_probs=90.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE--E--eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--K--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~--~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
+.|+|+|.||||||||+|+|++. +. .+...+++|...... . .+..+.++||||+....... ..+...+
T Consensus 2 ~~VaivG~~nvGKSTLin~L~~~-~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~------~~~~~~~ 73 (180)
T d1udxa2 2 ADVGLVGYPNAGKSSLLAAMTRA-HP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEG------KGLGLEF 73 (180)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSS-CC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGS------CCSCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CC-ceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHH------HHHHHHH
Confidence 57999999999999999999998 43 344555555444332 2 25679999999986532211 1122233
Q ss_pred HhcccCccEEEEEEeCCCCCChhhHHHHHHHH-----hcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRDHELISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~-----~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi~ 243 (243)
+.....++++++++|...........+..++. ..++|+++|+||+|+....+.. .+.+.+...+.++++||
T Consensus 74 l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~----~~~~~~~~~~~~~~~iS 149 (180)
T d1udxa2 74 LRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVK----ALADALAREGLAVLPVS 149 (180)
T ss_dssp HHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHH----HHHHHHHTTTSCEEECC
T ss_pred HHHHHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHH----HHHHHHHhcCCeEEEEE
Confidence 33345589999999987543233223333332 2358999999999999876554 34555566677777765
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.82 E-value=8.9e-20 Score=145.34 Aligned_cols=133 Identities=19% Similarity=0.217 Sum_probs=98.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccc----------cccccC-----CCCceEEEEE---EEeCCcEEEEeCCCCCCCcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWG----------VVRTSD-----KPGLTQTINF---FKLGTKLCLVDLPGYGFAYA 153 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~----------~~~vs~-----~~gtT~~~~~---~~~~~~~~liDTpG~~~~~~ 153 (243)
..+|+++|++++|||||+++|+.... ...... ..|+|.+... ...+..+.++||||+.+
T Consensus 3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~d--- 79 (204)
T d2c78a3 3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD--- 79 (204)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG---
T ss_pred CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchh---
Confidence 45899999999999999999974310 000111 1266766543 33478999999999854
Q ss_pred chHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCChHH-HHHHHHHHHHH
Q 026112 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPID-VARRAMQIEES 231 (243)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~~~-~~~~~~~l~~~ 231 (243)
+.....+....+|++++|+|+..++..++.+++..+...++| +++++||+|+.+..+ +.+..+.+++.
T Consensus 80 ----------f~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~ 149 (204)
T d2c78a3 80 ----------YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDL 149 (204)
T ss_dssp ----------GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHH
T ss_pred ----------hHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEecccCCCHHHHHHHHHHHHHH
Confidence 333444455569999999999999999999999999999987 778899999986544 45556777777
Q ss_pred HhhCCC
Q 026112 232 LKANNS 237 (243)
Q Consensus 232 l~~~~~ 237 (243)
+...+.
T Consensus 150 l~~~~~ 155 (204)
T d2c78a3 150 LNQYEF 155 (204)
T ss_dssp HHHTTS
T ss_pred HHhcCC
Confidence 765443
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.81 E-value=2.3e-20 Score=145.99 Aligned_cols=151 Identities=26% Similarity=0.244 Sum_probs=96.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE---EEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|+|||||+|+|++. ....+++.+++|+.... ...+..+.++||||+.......... ........
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~-~~~~~~~~ 84 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNK-ERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRT-VEKYSNYR 84 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS-TTEEECCCC------CCEEEEETTEEEEESSCSCC------------CCSCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC-CcceeecccccccccceeeeccCCceeeeeccCCccccccccccc-cccchhHH
Confidence 4579999999999999999999998 55778999998887642 2347789999999985421110000 00000111
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHH--HHHHHHHHHHHHhhC-CCccccCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--VARRAMQIEESLKAN-NSLVQPVV 243 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~--~~~~~~~l~~~l~~~-~~~~~pi~ 243 (243)
.......+|++++|+|+..+.......++..+...+.|+++|+||+|+....+ ..+..+.+++.+... ..+++|+|
T Consensus 85 ~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vS 163 (186)
T d1mkya2 85 VVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTS 163 (186)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECB
T ss_pred HHHHHhcCCEEEEeecccccchhhHHHHHHHHHHcCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEEe
Confidence 11222338999999999999889898999999999999999999999975543 233334444443322 22444543
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.79 E-value=8.1e-19 Score=138.76 Aligned_cols=132 Identities=19% Similarity=0.269 Sum_probs=98.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc--------------ccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW--------------GVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAK 154 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~--------------~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~ 154 (243)
..+|+++|..++|||||+++|++.. +........|.|.+.... ..+..+.++||||+.
T Consensus 3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~----- 77 (196)
T d1d2ea3 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA----- 77 (196)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH-----
T ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchH-----
Confidence 4589999999999999999998521 001122334677776433 347889999999963
Q ss_pred hHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCC-cEEEEeecCCCCChHHH-HHHHHHHHHHH
Q 026112 155 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDTVFPIDV-ARRAMQIEESL 232 (243)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~-p~i~v~nK~D~~~~~~~-~~~~~~l~~~l 232 (243)
.+.....+....+|++++|+|+..++.+++.+++..+...+. |+++++||+|+....+. .....++++.+
T Consensus 78 --------~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l 149 (196)
T d1d2ea3 78 --------DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELL 149 (196)
T ss_dssp --------HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEecccccccHHHHHHHHHHHHHHH
Confidence 356666677778999999999999999999999999888775 68899999999865443 33445677776
Q ss_pred hhCC
Q 026112 233 KANN 236 (243)
Q Consensus 233 ~~~~ 236 (243)
...+
T Consensus 150 ~~~~ 153 (196)
T d1d2ea3 150 TEFG 153 (196)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 6544
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=3.8e-19 Score=135.63 Aligned_cols=120 Identities=24% Similarity=0.237 Sum_probs=83.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE---EeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
+++|+++|++|||||||+|+|++. +...++..+++|++.... ..+..+.++||||+.+..... ... .....
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--~~~---~~~~~ 74 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR-EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV--ERI---GIERA 74 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHH--HHH---HHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CceEeecccccccceEeeeeeccCceeeeccccccccccccc--hhH---HHHHH
Confidence 468999999999999999999998 556788888888775433 236789999999987643222 111 11222
Q ss_pred HhcccCccEEEEEEeCCCCCChhhHHHH-HHHHh--cCCcEEEEeecCCCCC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRDHELI-SLMER--SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~~~~-~~l~~--~~~p~i~v~nK~D~~~ 217 (243)
......+|++++++|+............ ..+.. .+.|+++|+||+|+..
T Consensus 75 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~ 126 (161)
T d2gj8a1 75 WQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITG 126 (161)
T ss_dssp HHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHC
T ss_pred HHHHHhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhh
Confidence 2223349999999998766544444333 33333 2689999999999754
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.78 E-value=7e-20 Score=148.27 Aligned_cols=111 Identities=22% Similarity=0.337 Sum_probs=80.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--E-------------------EeCCcEEEEeCCCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--F-------------------KLGTKLCLVDLPGYGF 150 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~-------------------~~~~~~~liDTpG~~~ 150 (243)
.|.|+|+|++|+|||||+|+|++.. .. .....++|..... . ..+..+.++||||+.+
T Consensus 5 ~p~IaIiGh~d~GKSTL~~~L~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~ 82 (227)
T d1g7sa4 5 SPIVSVLGHVDHGKTTLLDHIRGSA-VA-SREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (227)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH-HS-CC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCEEEEEeCCCccHHHHHHHHHhhc-ch-heecCceeeeccccccccccccccccccccceeecccccccccccccceec
Confidence 4789999999999999999999863 11 1122222222110 0 1145799999999754
Q ss_pred CccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCC
Q 026112 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~ 217 (243)
- ..........+|++++|+|+..++...+.+++..+...++|+++|+||+|+..
T Consensus 83 f-------------~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iivlNK~D~~~ 136 (227)
T d1g7sa4 83 F-------------TTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIH 136 (227)
T ss_dssp C-------------TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGST
T ss_pred c-------------cccchhcccccceEEEEEecccCcccchhHHHHHhhcCCCeEEEEEECccCCC
Confidence 1 11222234559999999999999999999999999999999999999999864
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.77 E-value=7.8e-19 Score=153.25 Aligned_cols=140 Identities=17% Similarity=0.214 Sum_probs=94.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc---ccccccCCCCceEEEEEEEe--CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW---GVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~---~~~~vs~~~gtT~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
..+|+++|.||+|||||+|+|+|.. .....+...+||++...+.. +..+.+|||||++...... ..+..
T Consensus 56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~------~~~~~ 129 (400)
T d1tq4a_ 56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPP------DTYLE 129 (400)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCH------HHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccccccH------HHHHH
Confidence 4799999999999999999999852 11334455668888766653 5579999999997654322 11221
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCCh-------------HHHHHHHHHHHHHHh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP-------------IDVARRAMQIEESLK 233 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~-------------~~~~~~~~~l~~~l~ 233 (243)
.. ....+|+++++.|. .+...+..+++.+...++|+++|+||+|.... ..+....+.+.+.+.
T Consensus 130 ~~--~~~~~d~~l~~~~~--~~~~~d~~l~~~l~~~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~ 205 (400)
T d1tq4a_ 130 KM--KFYEYDFFIIISAT--RFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR 205 (400)
T ss_dssp HT--TGGGCSEEEEEESS--CCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred Hh--hhhcceEEEEecCC--CCCHHHHHHHHHHHHcCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHH
Confidence 11 22347888777764 47789999999999999999999999996422 223444555666666
Q ss_pred hCCCcccc
Q 026112 234 ANNSLVQP 241 (243)
Q Consensus 234 ~~~~~~~p 241 (243)
..+....|
T Consensus 206 ~~~~~~~~ 213 (400)
T d1tq4a_ 206 ENGIAEPP 213 (400)
T ss_dssp HTTCSSCC
T ss_pred HcCCCCCC
Confidence 65544433
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.77 E-value=1.3e-19 Score=141.64 Aligned_cols=139 Identities=20% Similarity=0.220 Sum_probs=83.3
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE----eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
+.|+|+|+||||||||+|+|++. + ..+.+.+++|++..... .+..+.++||||+........ .+...+
T Consensus 2 ~~VaiiG~~nvGKSSLin~L~~~-~-~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~------~~~~~~ 73 (185)
T d1lnza2 2 ADVGLVGFPSVGKSTLLSVVSSA-K-PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGV------GLGHQF 73 (185)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEE-C-CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTT------TTHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCC-C-CceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHH------HHHHHH
Confidence 57999999999999999999998 4 35666777776643322 245799999999743211110 111122
Q ss_pred HhcccCccEEEEEEeCCCC--CChhhHHH-HHHH-H-----hcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCcc
Q 026112 169 VSTRVSLKRVCLLIDTKWG--VKPRDHEL-ISLM-E-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLV 239 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~--~~~~~~~~-~~~l-~-----~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~ 239 (243)
+.....++.++++++.... ....+... .... . ..++|+++|+||+|+.+..+ ..+.+.+.+.. +.++
T Consensus 74 l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~---~~~~~~~~~~~-~~~v 149 (185)
T d1lnza2 74 LRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAE---NLEAFKEKLTD-DYPV 149 (185)
T ss_dssp HHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH---HHHHHHHHCCS-CCCB
T ss_pred HHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHH---HHHHHHHHhcc-CCcE
Confidence 2222237888888875432 22222111 1111 1 12579999999999987643 23444555443 4456
Q ss_pred ccCC
Q 026112 240 QPVV 243 (243)
Q Consensus 240 ~pi~ 243 (243)
+|||
T Consensus 150 ~~iS 153 (185)
T d1lnza2 150 FPIS 153 (185)
T ss_dssp CCCS
T ss_pred EEEE
Confidence 6664
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.76 E-value=2.6e-19 Score=136.40 Aligned_cols=121 Identities=23% Similarity=0.343 Sum_probs=86.3
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE---EEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~---~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
+|+++|.||||||||+|+|++. +...++..+++|+... ....+..+.++||||+....... .. ......++.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~-~~---~~~~~~~~~ 76 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE-DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDL-VE---RLGIERTLQ 76 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH-TBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTT-CC---CCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC-CceeeeccccccccceeEEEEeCCeeEEeccccccccCCccH-HH---HHHHHHHHH
Confidence 7999999999999999999998 5677888888887653 22346789999999975432110 00 001122222
Q ss_pred cccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHH
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV 221 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~ 221 (243)
....+|++++|+|++.+....+..+...+ ...++++++||+|+......
T Consensus 77 ~~~~ad~ii~v~d~~~~~~~~~~~~~~~~--~~~~~i~~~~k~d~~~~~~~ 125 (160)
T d1xzpa2 77 EIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKINE 125 (160)
T ss_dssp HHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCCH
T ss_pred HHHhCCEEEEEEeCCCCcchhhhhhhhhc--ccccceeeeeeccccchhhh
Confidence 23338999999999988777766655544 35789999999999976543
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=7.2e-18 Score=130.83 Aligned_cols=159 Identities=35% Similarity=0.482 Sum_probs=98.6
Q ss_pred cCCCCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceE-EEEEEEeCCcEEEEeCCCCCCCccchHHHHHHH
Q 026112 84 SSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWE 162 (243)
Q Consensus 84 ~~~~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~-~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~ 162 (243)
.++.|....++|+++|+||||||||+|+|++. +........++|. .............+++.+...............
T Consensus 8 ~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (188)
T d1puia_ 8 IRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQ-KSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQ 86 (188)
T ss_dssp GGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEEEETTEEEEECCCCC------CCHHHHH
T ss_pred hhHCCCccCCEEEEECCCCCCHHHHHHHHhCC-CceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhh
Confidence 35677788899999999999999999999998 3343444444433 333333333444444444322111111111112
Q ss_pred HHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCC--ccc
Q 026112 163 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS--LVQ 240 (243)
Q Consensus 163 ~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~--~~~ 240 (243)
.....+......++.++.+.++..+........+..+.....++++++||+|+..........+.+++.+..... +++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i 166 (188)
T d1puia_ 87 RALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVE 166 (188)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEE
T ss_pred hhhhhhhhhhhheeEEEEeecccccchhHHHHHHHHhhhccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEE
Confidence 233333344445677788888888888888888888888899999999999999998888888888887766543 344
Q ss_pred cCC
Q 026112 241 PVV 243 (243)
Q Consensus 241 pi~ 243 (243)
|||
T Consensus 167 ~vS 169 (188)
T d1puia_ 167 TFS 169 (188)
T ss_dssp ECB
T ss_pred EEe
Confidence 543
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.74 E-value=6e-18 Score=139.23 Aligned_cols=124 Identities=20% Similarity=0.182 Sum_probs=90.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
...+|+++|.||+|||||+|+|+|. ....+++.+++|+++..+. .+..+.++||||+.++...... .......
T Consensus 31 ~~l~I~LvG~tg~GKSSliN~ilg~-~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~---~~~~i~~ 106 (257)
T d1h65a_ 31 NSLTILVMGKGGVGKSSTVNSIIGE-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDM---ALNIIKS 106 (257)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHH---HHHHHHH
T ss_pred CCcEEEEECCCCCcHHHHHHHHhCC-CceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHH---HHHHHHH
Confidence 4579999999999999999999998 6678888899998875543 3678999999999865332211 1111222
Q ss_pred HHhcccCccEEEEEEeCCC-CCChhhHHHHHHHHhc-----CCcEEEEeecCCCCChH
Q 026112 168 YVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERS-----QTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~-~~~~~~~~~~~~l~~~-----~~p~i~v~nK~D~~~~~ 219 (243)
+. .....+++++|++... .++..+...++.+... ..++++|+||+|...+.
T Consensus 107 ~~-~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~ 163 (257)
T d1h65a_ 107 FL-LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 163 (257)
T ss_dssp HT-TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HH-hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcC
Confidence 22 2234788999988654 4777777777766542 46899999999998653
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.74 E-value=8.6e-18 Score=133.13 Aligned_cols=113 Identities=22% Similarity=0.286 Sum_probs=73.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.|+|+|+|+||||||||+|+|++.. . .+++|++..... .+..+.++||||.... ...+......
T Consensus 3 ~p~V~lvG~~n~GKTSLln~l~~~~-~-----~~~tt~~~~~~~~~~~~~~~~l~D~~g~~~~------~~~~~~~~~~- 69 (209)
T d1nrjb_ 3 QPSIIIAGPQNSGKTSLLTLLTTDS-V-----RPTVVSQEPLSAADYDGSGVTLVDFPGHVKL------RYKLSDYLKT- 69 (209)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS-C-----CCBCCCSSCEEETTGGGSSCEEEECCCCGGG------THHHHHHHHH-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-C-----CCeEEecceEEEEEeCCeEEEEEecccccch------hhHHHHHHHH-
Confidence 4799999999999999999999873 2 245555544333 3678999999997541 1112222222
Q ss_pred HhcccCccEEEEEEeCCCCCCh--hhHH-------HHHHHHhcCCcEEEEeecCCCCChH
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKP--RDHE-------LISLMERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~--~~~~-------~~~~l~~~~~p~i~v~nK~D~~~~~ 219 (243)
....++.+++++|+...... .... .++.....+.|+++|+||+|+....
T Consensus 70 --~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~ 127 (209)
T d1nrjb_ 70 --RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 127 (209)
T ss_dssp --HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred --HhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence 23337889999997653221 1111 1222233578999999999997643
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.73 E-value=3.1e-17 Score=131.94 Aligned_cols=133 Identities=17% Similarity=0.202 Sum_probs=92.1
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccccc---------ccccCCCCce----------------------EEE---EEEE
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV---------VRTSDKPGLT----------------------QTI---NFFK 135 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~---------~~vs~~~gtT----------------------~~~---~~~~ 135 (243)
+..++|+++|..++|||||+++|+..... ...+...|++ .+. .+..
T Consensus 7 ~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 86 (222)
T d1zunb3 7 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 86 (222)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEec
Confidence 35678999999999999999999753210 0112222222 211 1222
Q ss_pred eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCC
Q 026112 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTD 214 (243)
Q Consensus 136 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D 214 (243)
.+..+.++||||+.+ ++....+....+|++++|+|+..++.++..+.+..+...++| +++++||+|
T Consensus 87 ~~~~~~iiD~PGH~d-------------fv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D 153 (222)
T d1zunb3 87 AKRKFIIADTPGHEQ-------------YTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMD 153 (222)
T ss_dssp SSEEEEEEECCCSGG-------------GHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTT
T ss_pred cceEEEEEeccchhh-------------hhhhhccccccCceEEEEeccccCcccchHHHHHHHHHcCCCEEEEEEEccc
Confidence 356899999999854 344444455569999999999999999999999999999976 889999999
Q ss_pred CCCh--HHHHHHHHHHHHHHhhC
Q 026112 215 TVFP--IDVARRAMQIEESLKAN 235 (243)
Q Consensus 215 ~~~~--~~~~~~~~~l~~~l~~~ 235 (243)
+.+. .........+...+...
T Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~ 176 (222)
T d1zunb3 154 LNGFDERVFESIKADYLKFAEGI 176 (222)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHTT
T ss_pred cccccceehhhhHHHHhhhhHhh
Confidence 9863 33455556666666554
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.72 E-value=3.1e-17 Score=129.33 Aligned_cols=139 Identities=20% Similarity=0.314 Sum_probs=96.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc-ccccccCCCCceEEEEEEE--------------------------eCCcEEEEe
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFK--------------------------LGTKLCLVD 144 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~-~~~~vs~~~gtT~~~~~~~--------------------------~~~~~~liD 144 (243)
..+|+++|..++|||||+|+|++.. .........|.|.+..+.. .+..+.++|
T Consensus 5 ~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD 84 (195)
T d1kk1a3 5 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID 84 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred cEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeeec
Confidence 4588999999999999999999742 1111122234443321110 013489999
Q ss_pred CCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCC-ChhhHHHHHHHHhcCCc-EEEEeecCCCCChHHHH
Q 026112 145 LPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVA 222 (243)
Q Consensus 145 TpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~~~~~ 222 (243)
|||+ ..+.....+....+|++++|+|+..+. .+...+.+..+...++| +++++||+|+.+.....
T Consensus 85 tPGh-------------~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~~~~~ 151 (195)
T d1kk1a3 85 APGH-------------EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKAL 151 (195)
T ss_dssp CSSH-------------HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHH
T ss_pred cchh-------------hhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccchhhHHHH
Confidence 9995 245555666666799999999999885 45556777888877766 78889999999988777
Q ss_pred HHHHHHHHHHhhCCC---ccccCC
Q 026112 223 RRAMQIEESLKANNS---LVQPVV 243 (243)
Q Consensus 223 ~~~~~l~~~l~~~~~---~~~pi~ 243 (243)
.....+.+.+..... ++.|||
T Consensus 152 ~~~~~~~~~~~~~~~~~~~iIpiS 175 (195)
T d1kk1a3 152 ENYRQIKEFIEGTVAENAPIIPIS 175 (195)
T ss_dssp HHHHHHHHHHTTSTTTTCCEEECB
T ss_pred HHHHHHHHHhccccCCCCeEEEEE
Confidence 777777777766443 445664
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.72 E-value=6e-17 Score=128.70 Aligned_cols=139 Identities=19% Similarity=0.265 Sum_probs=95.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccC---------CCCceEEEEEE------------------------EeC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD---------KPGLTQTINFF------------------------KLG 137 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~---------~~gtT~~~~~~------------------------~~~ 137 (243)
+..+|+++|..++|||||+|+|++... ..... ...++++.... ...
T Consensus 7 p~ini~iiGhVd~GKSTL~~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T d2qn6a3 7 PEVNIGVVGHVDHGKTTLVQAITGIWT-SKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL 85 (205)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHSCCC---------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred CCeEEEEEEccCCcHHHHHHHHHhhhc-hhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence 445899999999999999999997421 11000 00011111000 001
Q ss_pred CcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCC-ChhhHHHHHHHHhcCC-cEEEEeecCCC
Q 026112 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDT 215 (243)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-~~~~~~~~~~l~~~~~-p~i~v~nK~D~ 215 (243)
..+.++||||+. .+..........+|++++|+|+..++ ..+..+.+..+...++ |+++++||+|+
T Consensus 86 r~~~iiD~PGH~-------------df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl 152 (205)
T d2qn6a3 86 RRISFIDAPGHE-------------VLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDV 152 (205)
T ss_dssp EEEEEEECSCHH-------------HHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred EEEEEeccchHH-------------HHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcCCceeeeccccCCC
Confidence 258899999973 45666666777799999999999986 5666778888888886 78999999999
Q ss_pred CChHHHHHHHHHHHHHHhhCC---CccccCC
Q 026112 216 VFPIDVARRAMQIEESLKANN---SLVQPVV 243 (243)
Q Consensus 216 ~~~~~~~~~~~~l~~~l~~~~---~~~~pi~ 243 (243)
....+.......+.+.+.... .++.|||
T Consensus 153 ~~~~~~~~~~~~~~~~l~~~~~~~~p~ipiS 183 (205)
T d2qn6a3 153 VSKEEALSQYRQIKQFTKGTWAENVPIIPVS 183 (205)
T ss_dssp SCHHHHHHHHHHHHHHHTTSTTTTCCEEECB
T ss_pred ccchHHHHHHHHHHHHhccccCCCCeEEEEe
Confidence 998877776667776665543 2344554
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.69 E-value=2.1e-17 Score=136.52 Aligned_cols=136 Identities=21% Similarity=0.257 Sum_probs=98.3
Q ss_pred CEEEEecCCCCchhHHHHHHhccccc-c---c------ccC------CCCceEE---EEEEEeCCcEEEEeCCCCCCCcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGV-V---R------TSD------KPGLTQT---INFFKLGTKLCLVDLPGYGFAYA 153 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~-~---~------vs~------~~gtT~~---~~~~~~~~~~~liDTpG~~~~~~ 153 (243)
.+|+++|+.++|||||+.+|+-.... . . +++ ..|.|.. ..+.+.+..+.++||||+.+...
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~ 86 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTI 86 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCST
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHH
Confidence 48999999999999999999753210 0 0 111 1122222 23334578999999999876322
Q ss_pred chHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHh
Q 026112 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 233 (243)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~ 233 (243)
.- . . .+ ..+|..++|+|+..++......+.+.+...++|.++++||+|.... +..+.++.+++.++
T Consensus 87 e~--~---~-~l-------~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKmDr~~a-d~~~~l~ei~~~l~ 152 (276)
T d2bv3a2 87 EV--E---R-SM-------RVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA-DLWLVIRTMQERLG 152 (276)
T ss_dssp TH--H---H-HH-------HHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECTTSTTC-CHHHHHHHHHHTTC
T ss_pred HH--H---H-HH-------HhhhheEEeccccCCcchhHHHHHHHHHHcCCCEEEEEeccccccc-ccchhHHHHHHHhC
Confidence 11 1 1 11 1289999999999999999999999999999999999999999754 56788888999887
Q ss_pred hCCCccc-cC
Q 026112 234 ANNSLVQ-PV 242 (243)
Q Consensus 234 ~~~~~~~-pi 242 (243)
....+++ ||
T Consensus 153 ~~~vp~~~Pi 162 (276)
T d2bv3a2 153 ARPVVMQLPI 162 (276)
T ss_dssp CCEEECEEEE
T ss_pred CCeEEEEecc
Confidence 7766665 54
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.68 E-value=3.4e-17 Score=126.49 Aligned_cols=118 Identities=17% Similarity=0.216 Sum_probs=77.3
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
....+|+++|.+|||||||+|+|.+. ....+.+..|++.... ...+..+.++|++|... . ......++
T Consensus 14 ~~~~kI~vvG~~~vGKSsLi~~l~~~-~~~~~~~~~~~~~~~i-~~~~~~~~i~d~~g~~~------~----~~~~~~~~ 81 (176)
T d1fzqa_ 14 DQEVRILLLGLDNAGKTTLLKQLASE-DISHITPTQGFNIKSV-QSQGFKLNVWDIGGQRK------I----RPYWRSYF 81 (176)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS-CCEEEEEETTEEEEEE-EETTEEEEEEECSSCGG------G----HHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhcC-CCCcceeeeeeeEEEe-ccCCeeEeEeecccccc------c----hhHHHHHh
Confidence 34579999999999999999999987 3344554455443322 22366899999999643 1 22233344
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHH-H---hcCCcEEEEeecCCCCChHHHH
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLM-E---RSQTKYQVVLTKTDTVFPIDVA 222 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l-~---~~~~p~i~v~nK~D~~~~~~~~ 222 (243)
.. +|++++|+|+++..+... ..+...+ . ..++|+++|+||+|+....+..
T Consensus 82 ~~---~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~ 136 (176)
T d1fzqa_ 82 EN---TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPAS 136 (176)
T ss_dssp TT---CSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHH
T ss_pred hc---cceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHH
Confidence 33 899999999876432222 1222222 1 2368999999999998654433
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.67 E-value=1.5e-16 Score=131.07 Aligned_cols=126 Identities=25% Similarity=0.294 Sum_probs=91.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccc----c------ccC------CCCceEE---EEEEEeCCcEEEEeCCCCCCCcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVV----R------TSD------KPGLTQT---INFFKLGTKLCLVDLPGYGFAYA 153 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~----~------vs~------~~gtT~~---~~~~~~~~~~~liDTpG~~~~~~ 153 (243)
.+|+++|+.++|||||+.+|+...+.. . +++ ..+.|.. ..+...+..+.++||||+.+
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~d--- 79 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD--- 79 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG---
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhh---
Confidence 479999999999999999997432110 0 111 1222322 23334478899999999865
Q ss_pred chHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHh
Q 026112 154 KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 233 (243)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~ 233 (243)
+.....+....+|.+++|+|+..++......+++.+...++|.++++||+|... ......+.+++.+.
T Consensus 80 ----------F~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk~D~~~--~~~~~l~~~~~~lg 147 (267)
T d2dy1a2 80 ----------FVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKGG--DYYALLEDLRSTLG 147 (267)
T ss_dssp ----------GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGCC--CHHHHHHHHHHHHC
T ss_pred ----------hhhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhcccccccccccccccc--cchhhhhhHHHHhc
Confidence 122222222339999999999999999999999999999999999999999743 45667788888886
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.66 E-value=6.6e-16 Score=122.37 Aligned_cols=124 Identities=19% Similarity=0.238 Sum_probs=76.0
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE--eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
.|+++|++|||||||+|+|++. ......+..+++....... .+..+.++||||... . .......++.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~------~---~~~~~~~~~~- 70 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG-QYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHES------L---RFQLLDRFKS- 70 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS-CCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHH------H---HHHHHHHHGG-
T ss_pred EEEEECCCCCCHHHHHHHHHcC-CCCcccCCeeEEEEEEEEeeeeeeeeeeeecccccc------c---cchhhhhhhh-
Confidence 7999999999999999999987 3333333334444333222 256799999999631 1 1122333333
Q ss_pred ccCccEEEEEEeCCCCCCh---hhHHHHHHHHh-----cCCcEEEEeecCCCCChHHHHHHHHHHHH
Q 026112 172 RVSLKRVCLLIDTKWGVKP---RDHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~---~~~~~~~~l~~-----~~~p~i~v~nK~D~~~~~~~~~~~~~l~~ 230 (243)
.++.+++|+|++..... ....+.+.+.. ..+|+++|+||+|+..........+.+.+
T Consensus 71 --~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~ 135 (207)
T d2fh5b1 71 --SARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEK 135 (207)
T ss_dssp --GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHH
T ss_pred --hccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHH
Confidence 38999999998753211 11223333321 25799999999999864444444444433
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.66 E-value=1.4e-16 Score=121.78 Aligned_cols=115 Identities=20% Similarity=0.198 Sum_probs=73.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
..+|+++|.+|||||||+|+|.+. ....+.+..|... ..+...+..+.++||||... +.......
T Consensus 2 ~~ki~ivG~~~~GKTsLi~~l~~~-~~~~~~~t~~~~~-~~~~~~~~~~~~~D~~G~~~-------------~~~~~~~~ 66 (165)
T d1ksha_ 2 ELRLLMLGLDNAGKTTILKKFNGE-DVDTISPTLGFNI-KTLEHRGFKLNIWDVGGQKS-------------LRSYWRNY 66 (165)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTC-CCSSCCCCSSEEE-EEEEETTEEEEEEEECCSHH-------------HHTTGGGG
T ss_pred cEEEEEECCCCCCHHHHHHHHcCC-CCCcccceEeeee-eeccccccceeeeecCcchh-------------hhhHHHhh
Confidence 368999999999999999999987 3333333333222 12223467899999999521 11111122
Q ss_pred ccCccEEEEEEeCCCCCChhh--HHHHHHHH---hcCCcEEEEeecCCCCChHHH
Q 026112 172 RVSLKRVCLLIDTKWGVKPRD--HELISLME---RSQTKYQVVLTKTDTVFPIDV 221 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~---~~~~p~i~v~nK~D~~~~~~~ 221 (243)
...++++++++|......... ..+...+. ..+.|+++|+||+|+......
T Consensus 67 ~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 121 (165)
T d1ksha_ 67 FESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC 121 (165)
T ss_dssp CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH
T ss_pred hhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCH
Confidence 344899999999876422222 22223332 246899999999999754433
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=4.3e-16 Score=119.66 Aligned_cols=112 Identities=15% Similarity=0.048 Sum_probs=65.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE--eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
++|+++|.+|+|||||++++.+.. .....+..+.+....+.. ....+.+|||||... +..+...++.
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~----------~~~~~~~~~~ 70 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVE-DGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG----------GRWLPGHCMA 70 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-----------------CHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhCCc-cCCcCCeeeeeecceeeccccccceeeeecccccc----------cceecccchh
Confidence 589999999999999999999873 222222222222222221 235788999999632 1233444554
Q ss_pred cccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
. +|++++|+|.+...+... ..++..+.. ..+|+++|.||+|+...
T Consensus 71 ~---~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~ 120 (168)
T d2gjsa1 71 M---GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 120 (168)
T ss_dssp S---CSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGG
T ss_pred h---hhhhceeccccccccccccccccchhhcccccccceEEEeecccchhhh
Confidence 4 899999999876422222 234443432 24799999999998754
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=1.9e-15 Score=116.58 Aligned_cols=121 Identities=24% Similarity=0.233 Sum_probs=80.8
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
..|+|+|.+|||||||+|+|++. +...++..+++++...... ....+..+|+||..... .............
T Consensus 6 ~~I~iiG~~nvGKSSLin~L~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 80 (179)
T d1egaa1 6 GFIAIVGRPNVGKSTLLNKLLGQ-KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE----KRAINRLMNKAAS 80 (179)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTC-SEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH----HHHHHHHHTCCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC-CceeeccCCCceEEEEEeeeecCCceeEeecCCCceecc----hhhhhhhhhhccc
Confidence 46899999999999999999998 5566777666665543222 24557788999975311 1111111111111
Q ss_pred hcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChH
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~ 219 (243)
.....+++++++.|+.. .......+...+.....|.++|+||+|.....
T Consensus 81 ~~~~~~~~~l~~~d~~~-~~~~~~~~~~~l~~~~~~~i~v~~k~d~~~~~ 129 (179)
T d1egaa1 81 SSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEK 129 (179)
T ss_dssp SCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCH
T ss_pred cchhhcceeEEEEecCc-cchhHHHHHHHhhhccCceeeeeeeeeccchh
Confidence 22345788888888764 44555566667777788999999999998764
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.62 E-value=2.1e-16 Score=120.79 Aligned_cols=114 Identities=18% Similarity=0.124 Sum_probs=72.3
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.+|+++|.+|+|||||+|+|++........+..+.+........ ...+.+|||+|...... +...++
T Consensus 3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----------~~~~~~ 72 (164)
T d1z2aa1 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA----------ITKAYY 72 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC----------CCHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhh----------hhhhhh
Confidence 48999999999999999999976322223333333333222222 34688999999654211 112222
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHHh--cCCcEEEEeecCCCCChH
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~--~~~p~i~v~nK~D~~~~~ 219 (243)
. .+|++++|+|..+..+... ..+++.+.. .+.|+++|.||+|+....
T Consensus 73 ~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~ 122 (164)
T d1z2aa1 73 R---GAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDS 122 (164)
T ss_dssp T---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGC
T ss_pred c---cCceEEEEEeccchhhhhhcccccccccccCCCceEEEeeccCCcccce
Confidence 2 3999999999876422222 234444433 378999999999987543
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.62 E-value=1.3e-15 Score=117.00 Aligned_cols=114 Identities=17% Similarity=0.136 Sum_probs=72.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|+|||||+++|++........+..+.+........ ...+.+|||||..+ +..+...+
T Consensus 5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~----------~~~~~~~~ 74 (169)
T d3raba_ 5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER----------YRTITTAY 74 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHHHTT
T ss_pred EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchh----------hHHHHHHH
Confidence 368999999999999999999987322333344444444433332 24688999999532 12233333
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
+ ..+|++++|+|.....+... ..+...... ...|+++|.||+|+...
T Consensus 75 ~---~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 125 (169)
T d3raba_ 75 Y---RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125 (169)
T ss_dssp T---TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGG
T ss_pred H---hcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccc
Confidence 3 34899999999876422111 222333322 35789999999998654
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=7.7e-16 Score=118.43 Aligned_cols=112 Identities=19% Similarity=0.220 Sum_probs=70.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.++|+++|.+|+|||||+++|++.. ......+.++.+... ... ...+.+|||||... +..+..
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~~l~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~----------~~~~~~ 72 (171)
T d2ew1a1 5 LFKIVLIGNAGVGKTCLVRRFTQGL--FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER----------FRSITQ 72 (171)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS--CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHHG
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCC--CCCcccccccceEEEEEEEECCEEEEEEEEECCCchh----------hHHHHH
Confidence 3689999999999999999999873 223333444444322 222 24578999999532 122333
Q ss_pred HHHhcccCccEEEEEEeCCCCCChh-hHHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
.++ ..++++++|+|.+...+.. ...+...+.. ...|+++|.||+|+...
T Consensus 73 ~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~ 125 (171)
T d2ew1a1 73 SYY---RSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 125 (171)
T ss_dssp GGS---TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHH---hccceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccc
Confidence 333 3489999999987542221 1233333322 35789999999998654
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.60 E-value=1.1e-15 Score=117.71 Aligned_cols=113 Identities=16% Similarity=0.147 Sum_probs=71.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
..+|+++|.+|||||||+++|.... .....+..+.+.. ........+.++||||.... ..... ..
T Consensus 12 ~~kIvlvG~~~vGKTSli~rl~~~~-~~~~~~t~~~~~~-~~~~~~~~~~i~D~~g~~~~----------~~~~~---~~ 76 (173)
T d1e0sa_ 12 EMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVE-TVTYKNVKFNVWDVGGQDKI----------RPLWR---HY 76 (173)
T ss_dssp CEEEEEEEETTSSHHHHHHHTTCCC-CEEEEEETTEEEE-EEEETTEEEEEEEESCCGGG----------HHHHG---GG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC-CCCccceeeeeEE-EeeccceeeEEecCCCcchh----------hhHHH---hh
Confidence 4689999999999999999998763 2222222222221 11223567899999996531 11222 22
Q ss_pred ccCccEEEEEEeCCCCCChhh--HHHHHHHHh---cCCcEEEEeecCCCCChH
Q 026112 172 RVSLKRVCLLIDTKWGVKPRD--HELISLMER---SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~---~~~p~i~v~nK~D~~~~~ 219 (243)
...++++++|+|++....... ..+...+.. ...|+++|+||+|+....
T Consensus 77 ~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~ 129 (173)
T d1e0sa_ 77 YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 129 (173)
T ss_dssp TTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC
T ss_pred hcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccc
Confidence 344999999999875322221 223333322 368999999999997543
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=2e-15 Score=116.34 Aligned_cols=113 Identities=16% Similarity=0.130 Sum_probs=71.7
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe---CCcEEEEeCCCCCCCccchHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~ 164 (243)
...++|+++|.+|||||||++++++.. ....+..++.+... ... ...+.+|||+|..+.... +..+
T Consensus 4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~------~~~~ 74 (173)
T d2fn4a1 4 SETHKLVVVGGGGVGKSALTIQFIQSY---FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAM------REQY 74 (173)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSS---CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCC------HHHH
T ss_pred CCeEEEEEECCCCcCHHHHHHHHHhCC---CCcccccccccceeeEeccCCeeeeeeccccccccccccc------cchh
Confidence 345799999999999999999999863 23334444433321 122 246778999997653211 1222
Q ss_pred HHHHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH----hcCCcEEEEeecCCCCCh
Q 026112 165 VKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 165 ~~~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~~ 218 (243)
+. . +|++++|+|.+...+... ..+...+. ..+.|+++|.||+|+...
T Consensus 75 ~~----~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~ 126 (173)
T d2fn4a1 75 MR----A---GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ 126 (173)
T ss_dssp HH----H---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGG
T ss_pred hc----c---ceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhc
Confidence 22 2 899999999876422222 23333332 236799999999998643
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.59 E-value=2.7e-15 Score=114.52 Aligned_cols=115 Identities=17% Similarity=0.200 Sum_probs=69.5
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (243)
.+|+++|++|+|||||+|+|.+........+..|.+.. .....+..+.+|||||... . ......++.
T Consensus 3 ~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~-~~~~~~~~~~i~D~~G~~~------~----~~~~~~~~~-- 69 (164)
T d1zd9a1 3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKGNVTIKLWDIGGQPR------F----RSMWERYCR-- 69 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEETTEEEEEEEECCSHH------H----HTTHHHHHT--
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee-eeeeeeEEEEEeecccccc------c----ccccccccc--
Confidence 58999999999999999999887311111122221111 1122366789999999421 1 112223333
Q ss_pred cCccEEEEEEeCCCCCChhh--HHHHHHHHh---cCCcEEEEeecCCCCChHHH
Q 026112 173 VSLKRVCLLIDTKWGVKPRD--HELISLMER---SQTKYQVVLTKTDTVFPIDV 221 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~---~~~p~i~v~nK~D~~~~~~~ 221 (243)
.++++++|+|+....+-.. ..+...+.. .+.|+++|+||+|+......
T Consensus 70 -~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~ 122 (164)
T d1zd9a1 70 -GVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDE 122 (164)
T ss_dssp -TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH
T ss_pred -ccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhH
Confidence 3899999999875422111 122223222 36899999999998754333
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=2.8e-15 Score=115.04 Aligned_cols=111 Identities=14% Similarity=0.023 Sum_probs=68.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE---EEEeC--CcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~---~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.++|+++|.+|+|||||++++++.. ....+.+|..+.. ....+ ..+.+|||+|.... .....
T Consensus 2 ~~Ki~viG~~~vGKTsLi~r~~~~~---f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~----------~~~~~ 68 (171)
T d2erxa1 2 DYRVAVFGAGGVGKSSLVLRFVKGT---FRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF----------PAMQR 68 (171)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCC---CCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSC----------HHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCC---CCCccCcceeeccccceeeccccceeccccccccccc----------ccccc
Confidence 3689999999999999999999873 2233333333321 11112 35778999997541 11222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH-----hcCCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-----RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~-----~~~~p~i~v~nK~D~~~~ 218 (243)
.++.. +|++++|+|.+...+... ..+...+. ..+.|+++|.||+|+...
T Consensus 69 ~~~~~---a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~ 123 (171)
T d2erxa1 69 LSISK---GHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS 123 (171)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG
T ss_pred ccccc---eeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeeccccccc
Confidence 33333 899999999875322111 23333332 235799999999998644
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=4.2e-15 Score=113.67 Aligned_cols=111 Identities=13% Similarity=0.052 Sum_probs=69.3
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.++|+++|.+|||||||++++++... ...+..+..+.. .... ...+.+||++|.... .....
T Consensus 3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f---~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~----------~~~~~ 69 (167)
T d1kaoa_ 3 EYKVVVLGSGGVGKSALTVQFVTGTF---IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF----------ASMRD 69 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCC---CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----------HHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCC---CCccCCceeeeeeeeeecCcceEeeccccCCCcccc----------ccchH
Confidence 36899999999999999999998732 222222322221 1112 346889999996431 12222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH----hcCCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~~ 218 (243)
.++.. +|++++|+|.+...+... ..+...+. ..+.|+++|+||+|+...
T Consensus 70 ~~~~~---a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~ 123 (167)
T d1kaoa_ 70 LYIKN---GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE 123 (167)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred HHhhc---ccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhc
Confidence 33333 899999999876422222 22333222 135799999999998654
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.58 E-value=1.8e-15 Score=116.16 Aligned_cols=133 Identities=11% Similarity=0.040 Sum_probs=76.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE---EEEEe--CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~---~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
..+|+++|.+|||||||+|++++.. ....+.+|..+. ..... ...+.+|||+|..+. ..+..
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~---f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~----------~~~~~ 70 (168)
T d1u8za_ 4 LHKVIMVGSGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----------AAIRD 70 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C----------HHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCC---CCcccCCccccccccccccccccccccccccccccch----------hhhhh
Confidence 4689999999999999999998763 223333333221 11111 346789999997541 12223
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH----hcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCcccc
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 241 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~p 241 (243)
.++.. +|++++|+|.....+... ..+++.+. ..+.|+++|.||+|+...... ..+.+++.....+..+++
T Consensus 71 ~~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v--~~~~~~~~~~~~~~~~~e 145 (168)
T d1u8za_ 71 NYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQV--SVEEAKNRADQWNVNYVE 145 (168)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCS--CHHHHHHHHHHHTCEEEE
T ss_pred hcccc---cceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccc--cHHHHHHHHHHcCCeEEE
Confidence 33333 899999999876422222 23433333 236899999999998543221 112233334444444455
Q ss_pred C
Q 026112 242 V 242 (243)
Q Consensus 242 i 242 (243)
+
T Consensus 146 ~ 146 (168)
T d1u8za_ 146 T 146 (168)
T ss_dssp C
T ss_pred E
Confidence 4
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.58 E-value=8.1e-16 Score=119.40 Aligned_cols=114 Identities=18% Similarity=0.149 Sum_probs=71.6
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
....+|+++|.+|||||||+++|.+. ......+..+.+.... ...+..+.+|||||..... .....++
T Consensus 15 ~k~~KI~lvG~~~vGKTsLi~~l~~~-~~~~~~~t~~~~~~~~-~~~~~~~~i~D~~g~~~~~----------~~~~~~~ 82 (182)
T d1moza_ 15 NKELRILILGLDGAGKTTILYRLQIG-EVVTTKPTIGFNVETL-SYKNLKLNVWDLGGQTSIR----------PYWRCYY 82 (182)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCS-EEEEECSSTTCCEEEE-EETTEEEEEEEEC----CC----------TTGGGTT
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC-CCCccccccceEEEEE-eeCCEEEEEEecccccccc----------hhHHhhh
Confidence 35689999999999999999999887 3344444444333222 2236678999999964311 1111222
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHH-HHHHh---cCCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELI-SLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~-~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
..++++++|+|+++...... ..++ ..+.. .+.|+++|+||+|+...
T Consensus 83 ---~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~ 133 (182)
T d1moza_ 83 ---ADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 133 (182)
T ss_dssp ---TTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred ---ccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccc
Confidence 34899999999876543332 2222 22222 25899999999999653
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=4.7e-15 Score=113.00 Aligned_cols=136 Identities=18% Similarity=0.126 Sum_probs=80.2
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
++|+++|.+|||||||+|++++........+..+.+........ ...+.+|||+|.... ......++
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----------~~~~~~~~ 70 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERF----------RSLIPSYI 70 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGG----------GGGHHHHH
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchh----------ccchHHHh
Confidence 48999999999999999999987321222222222222222222 245789999996431 11222333
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHH---hcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVV 243 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi~ 243 (243)
.. +|++++|+|.....+... ..++..+. ..+.|+++|.||+|+...... ..+...+.....+..++++|
T Consensus 71 ~~---~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~~~e~S 143 (164)
T d1yzqa1 71 RD---SAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQV--SIEEGERKAKELNVMFIETS 143 (164)
T ss_dssp TT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCS--CHHHHHHHHHHTTCEEEECC
T ss_pred hc---cceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhh--hHHHHHHHHHHcCCEEEEec
Confidence 33 899999999876422222 23333332 236899999999998654322 12334445555555555543
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.58 E-value=5.6e-15 Score=112.63 Aligned_cols=137 Identities=18% Similarity=0.126 Sum_probs=81.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|||||||++++++........+..+.+........ ...+.++|++|.... .......|
T Consensus 2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 72 (165)
T d1z06a1 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERF---------RKSMVQHY 72 (165)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHH---------HTTTHHHH
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhh---------ccccceee
Confidence 368999999999999999999986322222333333333322222 456889999996320 01112233
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
+.. +|++++|+|.++..+... ..++..+.. .+.|+++|.||+|+..+.++ ..+.+++....++..++.+
T Consensus 73 ~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v--~~~~~~~~~~~~~~~~~e~ 146 (165)
T d1z06a1 73 YRN---VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQV--PTDLAQKFADTHSMPLFET 146 (165)
T ss_dssp HTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHTTCCEEEC
T ss_pred ecC---CCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccch--hHHHHHHHHHHCCCEEEEE
Confidence 333 899999999876422222 234444432 25799999999998754322 1223344445555555544
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=3.7e-15 Score=115.00 Aligned_cols=113 Identities=17% Similarity=0.159 Sum_probs=69.2
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.+|+++|.+|||||||++++++........+..+.+........ ...+.++||||..... .....++
T Consensus 5 ~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~----------~~~~~~~ 74 (175)
T d2f9la1 5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYR----------RITSAYY 74 (175)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTT----------CCCHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHH----------HHHHHHh
Confidence 68999999999999999999887322222333333332222222 2468899999953211 1111222
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHHhc---CCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~---~~p~i~v~nK~D~~~~ 218 (243)
..+|++++|+|.+...+... ..++..+... +.|+++|.||+|+...
T Consensus 75 ---~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~ 124 (175)
T d2f9la1 75 ---RGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 124 (175)
T ss_dssp ---TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred ---hccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeeccccc
Confidence 23899999999876421111 2344444332 5799999999998754
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=9.9e-15 Score=111.53 Aligned_cols=135 Identities=16% Similarity=0.138 Sum_probs=78.5
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
++|+++|.+|+|||||++++++........+..+.+........ ...+.+|||||.... ..+...++
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----------~~~~~~~~ 74 (166)
T d1z0fa1 5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF----------RAVTRSYY 74 (166)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT----------CHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhH----------HHHHHHHh
Confidence 68999999999999999999987321222222222222222222 237889999995431 12223333
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
.. +|++++|+|..+..+... ..+...+.. ...|+++|.||+|+....... .+.+++.....+..++++
T Consensus 75 ~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~--~~~~~~~~~~~~~~~~e~ 146 (166)
T d1z0fa1 75 RG---AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT--YEEAKQFAEENGLLFLEA 146 (166)
T ss_dssp HT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHHHTTCEEEEC
T ss_pred cC---CcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccH--HHHHHHHHHHcCCEEEEE
Confidence 33 899999999875422111 233333332 357899999999986443221 123344444445555444
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=7.8e-15 Score=118.96 Aligned_cols=132 Identities=18% Similarity=0.202 Sum_probs=93.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccc-------------c----------------cccCCCCceEEE---EEEEeCCc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGV-------------V----------------RTSDKPGLTQTI---NFFKLGTK 139 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~-------------~----------------~vs~~~gtT~~~---~~~~~~~~ 139 (243)
..+|+++|..++|||||+.+|+-.... . ......|.|.+. .+...+..
T Consensus 6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~ 85 (239)
T d1f60a3 6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 85 (239)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCEE
Confidence 369999999999999999998632100 0 000123455543 33445788
Q ss_pred EEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCC-------CChhhHHHHHHHHhcCCc-EEEEee
Q 026112 140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQTK-YQVVLT 211 (243)
Q Consensus 140 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~-------~~~~~~~~~~~l~~~~~p-~i~v~n 211 (243)
+.++||||+.+ +.....+....+|.+++|+|+..+ ...+..+.+..+...++| +++++|
T Consensus 86 i~iiDtPGH~d-------------f~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iN 152 (239)
T d1f60a3 86 VTVIDAPGHRD-------------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVN 152 (239)
T ss_dssp EEEEECCCCTT-------------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEECCCcHH-------------HHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEE
Confidence 99999999864 666677777889999999999865 334667778888888887 788999
Q ss_pred cCCCCCh--HHHHHHHHHHHHHHhhCC
Q 026112 212 KTDTVFP--IDVARRAMQIEESLKANN 236 (243)
Q Consensus 212 K~D~~~~--~~~~~~~~~l~~~l~~~~ 236 (243)
|+|+... ..+......+...+...+
T Consensus 153 KmD~~~~d~~~~~~~~~el~~~l~~~~ 179 (239)
T d1f60a3 153 KMDSVKWDESRFQEIVKETSNFIKKVG 179 (239)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 9999853 334555566666665544
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=4e-15 Score=114.34 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=66.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE---EEEEe--CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~---~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.++|+++|.+|||||||++++++... ...+.+|..+. ..... ...+.+|||+|..+.. ....
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f---~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~----------~~~~ 71 (171)
T d2erya1 5 KYRLVVVGGGGVGKSALTIQFIQSYF---VTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFG----------AMRE 71 (171)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC---CSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CC----------HHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC---CcccCcccccceeeeeeeccccccccccccccccccc----------cccc
Confidence 36899999999999999999998632 22233333232 11111 3468899999975421 1222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHH----HHhcCCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISL----MERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~----l~~~~~p~i~v~nK~D~~~~ 218 (243)
.++.. +|++++|+|.+...+... ..+... ......|+++|.||+|+...
T Consensus 72 ~~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~ 125 (171)
T d2erya1 72 QYMRT---GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQ 125 (171)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTS
T ss_pred ccccc---cceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhh
Confidence 22222 899999999876422222 122222 22336899999999998654
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=1.6e-15 Score=119.12 Aligned_cols=115 Identities=18% Similarity=0.123 Sum_probs=73.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+|+|.+|||||||++.|++........+..+++........ ...+.+|||||..... .+...+
T Consensus 6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~----------~~~~~~ 75 (194)
T d2bcgy1 6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFR----------TITSSY 75 (194)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTT----------CCCGGG
T ss_pred EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhH----------HHHHHH
Confidence 368999999999999999999987333334445555544433222 4568899999964311 111122
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHH---hcCCcEEEEeecCCCCChH
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~p~i~v~nK~D~~~~~ 219 (243)
+ ..++++++|+|.+....... ..+...+. ....|+++|.||+|+....
T Consensus 76 ~---~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~ 127 (194)
T d2bcgy1 76 Y---RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 127 (194)
T ss_dssp G---TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred h---ccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEecccccccc
Confidence 2 23899999999876422222 12222232 2357999999999998643
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=4.4e-15 Score=114.28 Aligned_cols=114 Identities=12% Similarity=0.035 Sum_probs=66.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE-e---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-L---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~-~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.++|+++|.+|||||||+|++++........+..+.+....... . ...+.++||||.... ......
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~----------~~~~~~ 71 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERF----------QSLGVA 71 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC--------------------C
T ss_pred eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhh----------hhHHHH
Confidence 46899999999999999999998732222233333222222221 1 235789999996431 111112
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh-------cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-------~~~p~i~v~nK~D~~~~ 218 (243)
....++++++|+|.+...+... ..+++.+.. ..+|+++|+||+|+...
T Consensus 72 ---~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~ 127 (175)
T d1ky3a_ 72 ---FYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES 127 (175)
T ss_dssp ---CSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred ---HhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhh
Confidence 2334899999999876432222 234443322 25799999999998754
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=6.3e-15 Score=113.46 Aligned_cols=113 Identities=13% Similarity=0.095 Sum_probs=69.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
++|+++|.+|||||||+|++.+........+..+.+........ ...+.+|||||... +..+...++
T Consensus 6 ~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~ 75 (174)
T d2bmea1 6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER----------FRSVTRSYY 75 (174)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHHHTTS
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchh----------hhhhHHHHh
Confidence 68999999999999999999887322222222233322222222 34688999999532 122233332
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
..++++++|+|.+...+... ..+...+.. .+.|+++|.||+|+...
T Consensus 76 ---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~ 125 (174)
T d2bmea1 76 ---RGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 125 (174)
T ss_dssp ---TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred ---hhCCEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccch
Confidence 34999999999876422222 122332222 36899999999998543
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.55 E-value=9.6e-15 Score=111.70 Aligned_cols=135 Identities=12% Similarity=0.074 Sum_probs=77.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.+|+++|.+|||||||+++|..........+..+.+........ ...+.++||+|.... ..+...++
T Consensus 5 ~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----------~~~~~~~~ 74 (167)
T d1z0ja1 5 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF----------RALAPMYY 74 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGTHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhh----------hHHHHHHH
Confidence 58999999999999999999987322222222233333222222 235679999996442 11222333
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHH---hcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
.. ++++++|+|.+...+... ..+...+. ....|+++|.||+|+....... ....++.....+..++++
T Consensus 75 ~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~--~~~~~~~~~~~~~~~~e~ 146 (167)
T d1z0ja1 75 RG---SAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVM--ERDAKDYADSIHAIFVET 146 (167)
T ss_dssp TT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSC--HHHHHHHHHHTTCEEEEC
T ss_pred hh---ccceEEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchh--HHHHHHHHHHcCCEEEEE
Confidence 33 899999999875422222 12222222 2367999999999996432221 122333344444444444
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.55 E-value=4.3e-15 Score=114.11 Aligned_cols=115 Identities=15% Similarity=0.048 Sum_probs=70.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE--eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.++|+++|.+|+|||||++++++........+..+......... ....+.+|||+|...... +...++
T Consensus 4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----------~~~~~~ 73 (169)
T d1x1ra1 4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA----------MREQYM 73 (169)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS----------SHHHHH
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecccccccccccccccccccccccccccc----------chhhhh
Confidence 47899999999999999999998632111112111111111111 235688999999754211 112233
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHH----hcCCcEEEEeecCCCCChH
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~~~ 219 (243)
+. +|++++|+|.+...+... ..+...+. ..+.|+++|.||+|+....
T Consensus 74 ~~---~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~ 125 (169)
T d1x1ra1 74 RT---GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR 125 (169)
T ss_dssp HH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTC
T ss_pred hh---ccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhc
Confidence 22 899999999886422222 23333332 2368999999999987654
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.4e-14 Score=111.15 Aligned_cols=113 Identities=16% Similarity=0.096 Sum_probs=71.2
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
++|+++|.+|||||||+++|++........+..+.+........ ...+.++||||.... ..+...++
T Consensus 7 ~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~----------~~~~~~~~ 76 (170)
T d1r2qa_ 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY----------HSLAPMYY 76 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhh----------hhhHHHHh
Confidence 58999999999999999999977322333333443333222222 346889999996431 12233344
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
.. ++++++|+|.....+... ..+...+.. .+.|+++|.||+|+...
T Consensus 77 ~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~ 126 (170)
T d1r2qa_ 77 RG---AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126 (170)
T ss_dssp TT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred hC---cceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeeccccccccc
Confidence 33 899999999775422221 223333322 25789999999998654
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.7e-14 Score=110.13 Aligned_cols=113 Identities=16% Similarity=0.094 Sum_probs=69.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe--CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
++|+++|.+|||||||+|+|++........+..+.......... ...+.+||++|.... ......++.
T Consensus 4 ~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~----------~~~~~~~~~ 73 (166)
T d1ctqa_ 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY----------SAMRDQYMR 73 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGG----------HHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCcccc----------ccchhhhhh
Confidence 58999999999999999999987321111222222222222222 345889999997541 112222333
Q ss_pred cccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
. ++++++|+|.+...+... ..++..+.. .++|+++|.||+|+...
T Consensus 74 ~---~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (166)
T d1ctqa_ 74 T---GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAAR 123 (166)
T ss_dssp H---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCC
T ss_pred c---ccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccc
Confidence 2 899999999876422222 344444432 35799999999998753
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=2.3e-15 Score=115.80 Aligned_cols=114 Identities=12% Similarity=0.078 Sum_probs=66.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
++|+++|.+|+|||||++++++........+..+.......... ...+.+|||||... +..+...++
T Consensus 4 ~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~----------~~~~~~~~~ 73 (170)
T d1i2ma_ 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK----------FGGLRDGYY 73 (170)
T ss_dssp EEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHH----------HSSCGGGGT
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccc----------cceecchhc
Confidence 58999999999999999999886311111111121111112222 34689999999421 111222232
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHH--hcCCcEEEEeecCCCCChH
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLME--RSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~--~~~~p~i~v~nK~D~~~~~ 219 (243)
..+|++++|+|.+...+... ..++..+. ..+.|+++|.||+|+....
T Consensus 74 ---~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~ 123 (170)
T d1i2ma_ 74 ---IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 123 (170)
T ss_dssp ---TTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSC
T ss_pred ---ccccchhhccccccccccchhHHHHHHHhhccCCCceeeecchhhhhhhh
Confidence 33899999999876432222 23333332 2368999999999997643
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.3e-14 Score=111.13 Aligned_cols=109 Identities=15% Similarity=0.064 Sum_probs=68.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceE-E--EEEEEeC--CcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-T--INFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~-~--~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||++++++.. ....+.+|.. + ......+ ..+.+|||+|.... . ....
T Consensus 3 iKi~lvG~~~vGKTsli~r~~~~~---f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~---~--------~~~~ 68 (168)
T d2atva1 3 VKLAIFGRAGVGKSALVVRFLTKR---FIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDT---I--------QREG 68 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCC---H--------HHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC---CCCccCCceeccccccccccccceEEEEeeccccccc---c--------cchh
Confidence 589999999999999999999873 2233333321 1 1222222 46889999997431 1 1112
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhH-HHHHHH---H-hcCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLM---E-RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~-~~~~~l---~-~~~~p~i~v~nK~D~~~~ 218 (243)
++.. ++++++|+|.+...+.... .+.... . ..+.|+++|.||+|+...
T Consensus 69 ~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~ 121 (168)
T d2atva1 69 HMRW---GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS 121 (168)
T ss_dssp HHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGG
T ss_pred hhcc---cccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhh
Confidence 2222 8999999998764222221 222222 1 236899999999998643
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.6e-14 Score=112.24 Aligned_cols=131 Identities=15% Similarity=0.080 Sum_probs=75.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE---EE------------eCCcEEEEeCCCCCCCccchHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FK------------LGTKLCLVDLPGYGFAYAKEEV 157 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~---~~------------~~~~~~liDTpG~~~~~~~~~~ 157 (243)
.+|+++|.+|||||||+++|++........ +..+.+... .. ....+.++||||..
T Consensus 6 ~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e-------- 75 (186)
T d2f7sa1 6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFI--TTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE-------- 75 (186)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCCCCEEE--EEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH--------
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCCCCccC--CcccceeeEEEEEEecccccccccccceEEeccccCCcch--------
Confidence 689999999999999999999763111111 111111111 00 12368899999942
Q ss_pred HHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHh-------cCCcEEEEeecCCCCChHHHHHHHHHHHH
Q 026112 158 KDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIEE 230 (243)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~-------~~~p~i~v~nK~D~~~~~~~~~~~~~l~~ 230 (243)
.+..+...++.. +|++++|+|.+.. .....+..++.. ...|+++|.||+|+....++.. +.+++
T Consensus 76 --~~~~~~~~~~~~---~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~--~e~~~ 146 (186)
T d2f7sa1 76 --RFRSLTTAFFRD---AMGFLLMFDLTSQ--QSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNE--RQARE 146 (186)
T ss_dssp --HHHHHHHHHHTT---CCEEEEEEETTCH--HHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCH--HHHHH
T ss_pred --hhHHHHHHHHhc---CCEEEEEEecccc--ccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchH--HHHHH
Confidence 223344444443 9999999998753 223333344432 1468999999999965432211 12333
Q ss_pred HHhhCCCccccC
Q 026112 231 SLKANNSLVQPV 242 (243)
Q Consensus 231 ~l~~~~~~~~pi 242 (243)
.....+..++++
T Consensus 147 ~~~~~~~~~~e~ 158 (186)
T d2f7sa1 147 LADKYGIPYFET 158 (186)
T ss_dssp HHHHTTCCEEEE
T ss_pred HHHHcCCEEEEE
Confidence 334444444444
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.53 E-value=1.5e-14 Score=116.22 Aligned_cols=113 Identities=20% Similarity=0.285 Sum_probs=75.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccc-----------------------------ccccCCCCceEEEE---EEEeCCc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTIN---FFKLGTK 139 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~-----------------------------~~vs~~~gtT~~~~---~~~~~~~ 139 (243)
..+|+++|..++|||||+.+|+..... .......|.|.+.. +...+..
T Consensus 3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~ 82 (224)
T d1jnya3 3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF 82 (224)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence 458999999999999999998632100 01122334444432 2223678
Q ss_pred EEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCC-------ChhhHHHHHHHHhcCC-cEEEEee
Q 026112 140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDHELISLMERSQT-KYQVVLT 211 (243)
Q Consensus 140 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-------~~~~~~~~~~l~~~~~-p~i~v~n 211 (243)
+.++||||+.+ +.....+....+|++++|+|+.++. ..+..+.+..+...++ ++++++|
T Consensus 83 i~iiDtPGH~d-------------f~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iN 149 (224)
T d1jnya3 83 FTIIDAPGHRD-------------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVN 149 (224)
T ss_dssp EEECCCSSSTT-------------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEE
T ss_pred eEEeeCCCcHH-------------HHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEE
Confidence 99999999854 5556666677799999999998873 3344566666666666 5888999
Q ss_pred cCCCCC
Q 026112 212 KTDTVF 217 (243)
Q Consensus 212 K~D~~~ 217 (243)
|+|+..
T Consensus 150 K~D~~~ 155 (224)
T d1jnya3 150 KMDLTE 155 (224)
T ss_dssp CGGGSS
T ss_pred cccCCC
Confidence 999974
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=2.9e-15 Score=114.63 Aligned_cols=111 Identities=18% Similarity=0.126 Sum_probs=68.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCce-EEEE-EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTIN-FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT-~~~~-~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
..+|+++|.+|+|||||+++|++... ...+.+|. .+.. .... ...+.++||+|...... +..
T Consensus 4 ~~Kv~liG~~~vGKTsLl~~~~~~~f---~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~----------~~~ 70 (167)
T d1xtqa1 4 SRKIAILGYRSVGKSSLTIQFVEGQF---VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSI----------FPQ 70 (167)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC---CSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCC----------CCG
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCC---CcccCcceecccceEEecCcEEEEeeeccccccccccc----------ccc
Confidence 35899999999999999999987632 22222221 2211 1122 34678999999754211 111
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHH----HhcCCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM----ERSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l----~~~~~p~i~v~nK~D~~~~ 218 (243)
.++ ..+|++++|+|.+...+... ..+...+ ...+.|+++|.||+|+...
T Consensus 71 ~~~---~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~ 124 (167)
T d1xtqa1 71 TYS---IDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124 (167)
T ss_dssp GGT---SSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGG
T ss_pred hhh---hhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccc
Confidence 122 34999999999886422222 1233222 2346899999999998654
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.53 E-value=7.9e-15 Score=113.96 Aligned_cols=113 Identities=13% Similarity=0.028 Sum_probs=70.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
++|+++|.+|||||||++++++........+..+.+........ ...+.++||||..+.... ...+
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~----------~~~~- 71 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL----------GVAF- 71 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCS----------CCGG-
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCccccccc----------cccc-
Confidence 68999999999999999999987322222333344443333332 246789999996542111 1111
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHHh-------cCCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-------~~~p~i~v~nK~D~~~~ 218 (243)
...+|++++++|.....+... ..+++.+.. ..+|+++|+||+|+...
T Consensus 72 --~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~ 126 (184)
T d1vg8a_ 72 --YRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR 126 (184)
T ss_dssp --GTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC
T ss_pred --ccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeeccccc
Confidence 233899999999875322111 233333322 25799999999998754
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=9.4e-15 Score=111.75 Aligned_cols=113 Identities=14% Similarity=0.073 Sum_probs=67.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
++|+++|.+|||||||++++++........+..+.......... ...+.+|||+|.... ..+...++
T Consensus 4 fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~----------~~~~~~~~ 73 (167)
T d1z08a1 4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF----------HALGPIYY 73 (167)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-----------------CCSS
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCccee----------cccchhhc
Confidence 58999999999999999999986322222222232222222222 246889999996431 11222222
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHH---hcCCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~p~i~v~nK~D~~~~ 218 (243)
..+|++++|+|.+...+... ..+++.+. ....|+++|.||+|+...
T Consensus 74 ---~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 123 (167)
T d1z08a1 74 ---RDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 123 (167)
T ss_dssp ---TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred ---cCCceeEEEEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccc
Confidence 34899999999886422222 12222222 346789999999998754
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.3e-14 Score=110.61 Aligned_cols=135 Identities=19% Similarity=0.107 Sum_probs=79.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|+|||||+|+|++........+..+.+........ ...+.+|||||..+.. .+...+
T Consensus 7 ~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~ 76 (177)
T d1x3sa1 7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFR----------TLTPSY 76 (177)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGC----------CSHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhH----------HHHHHH
Confidence 358999999999999999999987422223333333322222222 3468999999964321 112223
Q ss_pred HhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
.. .+|++++|+|.+...+... ..++..+.. ...|++++.||.|.....-.. ..+++.....+..++++
T Consensus 77 ~~---~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~---~~~~~~~~~~~~~~~e~ 149 (177)
T d1x3sa1 77 YR---GAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDR---NEGLKFARKHSMLFIEA 149 (177)
T ss_dssp HT---TCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCH---HHHHHHHHHTTCEEEEC
T ss_pred Hh---cCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccH---HHHHHHHHHCCCEEEEE
Confidence 33 3899999999775322211 234444432 247899999999987532111 22333444455555544
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=8e-14 Score=107.17 Aligned_cols=114 Identities=13% Similarity=0.032 Sum_probs=69.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
..++|+++|.+|||||||+|++++........+..+.+........ ...+.++||+|..+. ....
T Consensus 5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----------~~~~-- 72 (174)
T d1wmsa_ 5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF----------RSLR-- 72 (174)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG----------HHHH--
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCccee----------hhhh--
Confidence 3568999999999999999999987322223333333333333332 245679999996431 1111
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh-------cCCcEEEEeecCCCCC
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~-------~~~p~i~v~nK~D~~~ 217 (243)
......++++++++|.+...+... ..+++.+.. .+.|+++|.||+|+.+
T Consensus 73 -~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~ 129 (174)
T d1wmsa_ 73 -TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE 129 (174)
T ss_dssp -GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred -hhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh
Confidence 122334899999999875422221 233333322 2579999999999865
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=99.50 E-value=5.6e-14 Score=116.08 Aligned_cols=135 Identities=24% Similarity=0.356 Sum_probs=73.0
Q ss_pred ccCCCchhhHHHHHhhCCCCcceeeeeccccc---------ccCCC-CCCCCCC--ChhHHHHHHHhhhhhhhhHHHhhc
Q 026112 15 AIQPSPSILSFVEDNLLGRRRPIELRRAGYNI---------ELSAP-LDNIPFS--TSSERERIEENIFRNKLEFFAAAK 82 (243)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------~l~~~-~e~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 82 (243)
+--|..+.++.+++.+.++..++..++...-- ..... ...+... .......+...+............
T Consensus 25 aR~P~ss~~~~l~~~~~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~~~i~isa~~~~~~~~~~~~~~~~l~~~~~~~~ 104 (273)
T d1puja_ 25 ARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMR 104 (273)
T ss_dssp TTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHcCCCeEEEEECccCCchHHHHHHHHHHHhcCCccceeecccCCCccccchhhhhhhhhhhhhhh
Confidence 44678889999999999888888888754210 00000 0000000 000001111111100000111101
Q ss_pred ccCCCCCCCCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCc
Q 026112 83 VSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152 (243)
Q Consensus 83 ~~~~~~~~~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~ 152 (243)
..-......+|+++|.||||||||+|+|.+. +.+.+++.||+|++.+....+..+.++||||+..+.
T Consensus 105 --~~~~~~~~~~v~vvG~PNvGKSsliN~L~~~-~~~~~~~~pG~Tr~~~~i~~~~~~~l~DTPGi~~p~ 171 (273)
T d1puja_ 105 --AKGVKPRAIRALIIGIPNVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPK 171 (273)
T ss_dssp --HTTCCCCCEEEEEEESTTSSHHHHHHHHHTS-CCC------------CCEEETTTEEEEECCCCCCSC
T ss_pred --hccCCCCceEEEEEecCccchhhhhhhhhcc-ceEEECCcccccccceEEECCCCeEEecCCCccccC
Confidence 1112245679999999999999999999999 678999999999999988889999999999987653
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.50 E-value=4e-14 Score=106.50 Aligned_cols=114 Identities=18% Similarity=0.225 Sum_probs=70.3
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceE-EEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~-~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
.+|+++|.+|||||||+|+|++.. .... ++.++. ..........+.++|+||.... ......++.
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~d~~g~~~~----------~~~~~~~~~- 66 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGE-IVTT--IPTIGFNVETVEYKNISFTVWDVGGQDKI----------RPLWRHYFQ- 66 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHC-SSCC--CCCSSCCEEEEECSSCEEEEEECCCCGGG----------HHHHHHHTT-
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CCcc--ccceeeEEEEEeeeeEEEEEecCCCcccc----------hhhhhhhhc-
Confidence 379999999999999999999873 2211 111111 1122223678999999997541 122223333
Q ss_pred ccCccEEEEEEeCCCCCChhh--HHHHHHHH---hcCCcEEEEeecCCCCChHHHH
Q 026112 172 RVSLKRVCLLIDTKWGVKPRD--HELISLME---RSQTKYQVVLTKTDTVFPIDVA 222 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~---~~~~p~i~v~nK~D~~~~~~~~ 222 (243)
.++++++++|......... ..+.+.+. ....|+++|.||.|+.......
T Consensus 67 --~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~ 120 (160)
T d1r8sa_ 67 --NTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 120 (160)
T ss_dssp --TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH
T ss_pred --cceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHH
Confidence 3899999999875422222 12222222 2357999999999988654333
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.50 E-value=5.7e-15 Score=124.65 Aligned_cols=84 Identities=23% Similarity=0.217 Sum_probs=46.2
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE---------------------------eCCcEEEEeCC
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---------------------------LGTKLCLVDLP 146 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~---------------------------~~~~~~liDTp 146 (243)
+|+++|.||||||||+|+|++.. +.++++|+||.+++... .+..+.++|+|
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~--~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~p 79 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred cEeEECCCCCCHHHHHHHHHCCC--CchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECC
Confidence 69999999999999999999984 78999999998764321 01358999999
Q ss_pred CCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCC
Q 026112 147 GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (243)
Q Consensus 147 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~ 185 (243)
|+....... ..+..+++...+.+|++++|+|+.
T Consensus 80 Gli~ga~~g------~~~~~~~l~~i~~~d~ii~VVd~~ 112 (319)
T d1wxqa1 80 GLVPGAHEG------RGLGNKFLDDLRMASALIHVVDAT 112 (319)
T ss_dssp ---------------------CCCSSTTCSEEEEEEETT
T ss_pred Ccccchhcc------cchHHHHHHhhccceEEEEEeccc
Confidence 986532221 245667778888899999999975
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=3.2e-14 Score=109.00 Aligned_cols=115 Identities=17% Similarity=0.216 Sum_probs=67.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccc-cccCCCCceEEEEEEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVV-RTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~-~vs~~~gtT~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.++|+++|.+|||||||++++++..... ...+..+.+........ + ..+.+|||||... +..+...
T Consensus 6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~----------~~~~~~~ 75 (170)
T d2g6ba1 6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER----------FRSVTHA 75 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC------------------C
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchh----------hHHHHHH
Confidence 3689999999999999999998863111 11222222332222222 2 3678999999632 1122222
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh-HHHHHHH-H--hcCCcEEEEeecCCCCChH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD-HELISLM-E--RSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l-~--~~~~p~i~v~nK~D~~~~~ 219 (243)
+. ..+|++++|+|.+...+... ..+...+ . ....|+++|.||+|+....
T Consensus 76 ~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~ 128 (170)
T d2g6ba1 76 YY---RDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHER 128 (170)
T ss_dssp CG---GGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCC
T ss_pred hh---cCCceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcc
Confidence 22 23899999999875422222 1122212 2 2357899999999988653
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.4e-14 Score=111.39 Aligned_cols=112 Identities=16% Similarity=0.117 Sum_probs=67.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
++|+++|.+|||||||++++++........+..+++........ ...+.++|++|...... +...++
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----------~~~~~~ 73 (173)
T d2a5ja1 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS----------ITRSYY 73 (173)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSC----------CCHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhh----------HHHHHh
Confidence 58999999999999999999987321111222222222222222 34688999999644211 122222
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHHh---cCCcEEEEeecCCCCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~D~~~ 217 (243)
. .+|++++|+|.....+... ..++..+.. .+.|+++|.||+|+..
T Consensus 74 ~---~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 122 (173)
T d2a5ja1 74 R---GAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 122 (173)
T ss_dssp T---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred h---ccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhh
Confidence 2 2899999999876422222 233333322 3689999999999754
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=3e-14 Score=109.89 Aligned_cols=112 Identities=11% Similarity=0.013 Sum_probs=70.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE--EEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~--~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||++++++... ...+.+|..+.. .... ...+.+|||+|.... ..+...
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~~f---~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----------~~~~~~ 69 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKDQF---PEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY----------DRLRPL 69 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC---CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------TTTGGG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC---CCCcCCceeeeccccccccccceeeeccccCccchh----------cccchh
Confidence 4799999999999999999998731 222222222221 1111 346899999996431 112222
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHh--cCCcEEEEeecCCCCChHH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~p~i~v~nK~D~~~~~~ 220 (243)
|+ ..+|++++|+|.+...+... ..+...+.. .+.|+++|.||+|+.....
T Consensus 70 ~~---~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~ 123 (177)
T d1kmqa_ 70 SY---PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 123 (177)
T ss_dssp GC---TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHH
T ss_pred hc---ccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhh
Confidence 22 34899999999876422111 223344433 2689999999999986543
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.5e-14 Score=112.57 Aligned_cols=114 Identities=11% Similarity=-0.017 Sum_probs=71.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EE-e--CCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FK-L--GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~-~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
..++|+++|.+|||||||+++++... ....+.+|+.+... .. . ...+.+|||+|..... .+.
T Consensus 8 ~~~Ki~lvG~~~vGKTsLi~r~~~~~---f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~----------~~~ 74 (185)
T d2atxa1 8 LMLKCVVVGDGAVGKTCLLMSYANDA---FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD----------RLR 74 (185)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSS---CCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSST----------TTG
T ss_pred cEEEEEEECCCCCCHHHHHHHHhhCC---CCCcCCCceeeeeeEEEeeCCceEEeecccccccchhh----------hhh
Confidence 45789999999999999999999863 22333333322211 11 1 2457899999964421 111
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHhc--CCcEEEEeecCCCCChHH
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~D~~~~~~ 220 (243)
..++ ..+|++++|+|.++..+... ..+...++.. +.|+++|.||+|+.+...
T Consensus 75 ~~~~---~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~ 130 (185)
T d2atxa1 75 PLSY---PMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPK 130 (185)
T ss_dssp GGGC---TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHH
T ss_pred hhcc---cccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchh
Confidence 2222 23899999999876422221 2333444332 679999999999986543
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.49 E-value=6.2e-14 Score=107.59 Aligned_cols=116 Identities=18% Similarity=0.180 Sum_probs=73.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
..++|+++|.+|||||||+|+|.+. .........+++.. .....+..+.++|++|...... ....+..
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~----------~~~~~~~ 81 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMN-EVVHTSPTIGSNVE-EIVINNTRFLMWDIGGQESLRS----------SWNTYYT 81 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT-SCEEEECCSCSSCE-EEEETTEEEEEEECCC----CG----------GGHHHHT
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcC-CCCccccccceeEE-EEeecceEEEEecccccccccc----------chhhhhc
Confidence 3479999999999999999999998 44555555554332 2333467899999999654211 1112222
Q ss_pred cccCccEEEEEEeCCCCCChhhH-HHHHHHH----hcCCcEEEEeecCCCCChHHH
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRDH-ELISLME----RSQTKYQVVLTKTDTVFPIDV 221 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~~-~~~~~l~----~~~~p~i~v~nK~D~~~~~~~ 221 (243)
.++.+++++|.+........ ....... ....|+++|+||+|+......
T Consensus 82 ---~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 134 (177)
T d1zj6a1 82 ---NTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV 134 (177)
T ss_dssp ---TCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH
T ss_pred ---cceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcH
Confidence 28999999998764333221 1112221 236899999999999765433
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.49 E-value=1.8e-14 Score=110.02 Aligned_cols=117 Identities=18% Similarity=0.173 Sum_probs=68.3
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe-C--CcEEEEeCCCCCCCccchHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 168 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 168 (243)
.++|+++|.+|+|||||++++++........+..+.+........ + ..+.+|||||..... .+...+
T Consensus 2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~ 71 (166)
T d1g16a_ 2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFR----------TITTAY 71 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTS----------CCCHHH
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhH----------HHHHHH
Confidence 368999999999999999999987321222222232322222222 3 356689999953211 112233
Q ss_pred HhcccCccEEEEEEeCCCCCChhhH-HHHHHHH---hcCCcEEEEeecCCCCChHHH
Q 026112 169 VSTRVSLKRVCLLIDTKWGVKPRDH-ELISLME---RSQTKYQVVLTKTDTVFPIDV 221 (243)
Q Consensus 169 ~~~~~~~d~v~~vvd~~~~~~~~~~-~~~~~l~---~~~~p~i~v~nK~D~~~~~~~ 221 (243)
++ .+|++++|+|.++..+.... .+..... ....|++++.||.|+......
T Consensus 72 ~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~ 125 (166)
T d1g16a_ 72 YR---GAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVT 125 (166)
T ss_dssp HT---TEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSC
T ss_pred Hh---cCCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhhh
Confidence 33 38999999998864222222 1222222 235789999999998765433
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=3e-14 Score=109.58 Aligned_cols=114 Identities=17% Similarity=0.093 Sum_probs=67.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEE---eCCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.++|+++|.+|+|||||+|++++... ......+.+..+. .... ....+.+||+||... .+ .++.
T Consensus 3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g---~e-------~~~~ 71 (172)
T d2g3ya1 3 YYRVVLIGEQGVGKSTLANIFAGVHD-SMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG---EN-------EWLH 71 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCC-TTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH---HH-------HHHH
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCcC-CccccccceeeecceeeeccCCceeeeeeeccccccc---cc-------cccc
Confidence 46899999999999999999998631 2222222221111 1111 234578999987531 11 1111
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHHh----cCCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~D~~~~ 218 (243)
......+|++++|+|.+...+... ..+...+.. .+.|+++|.||+|+...
T Consensus 72 --~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~ 126 (172)
T d2g3ya1 72 --DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRC 126 (172)
T ss_dssp --HCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGG
T ss_pred --cccccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEecccccccc
Confidence 112345899999999875422221 233333332 26899999999998654
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.48 E-value=1.2e-14 Score=111.80 Aligned_cols=112 Identities=17% Similarity=0.165 Sum_probs=50.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE--EEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~--~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.++|+++|.+|+|||||+++|++... .....+..+.+. ..... ...+.+|||||... +..+..
T Consensus 6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~----------~~~~~~ 73 (173)
T d2fu5c1 6 LFKLLLIGDSGVGKTCVLFRFSEDAF--NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTITT 73 (173)
T ss_dssp EEEEEEECCCCC------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-------------------CC
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCC--CCccCccccceEEEEEEEECCEEEEEEEEECCCchh----------hHHHHH
Confidence 46899999999999999999998631 111112222222 22222 24577899999532 112222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH---hcCCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~p~i~v~nK~D~~~~ 218 (243)
.+ ...+|++++|+|++.+.+... ..+.+.+. ....|+++|.||+|+...
T Consensus 74 ~~---~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~ 126 (173)
T d2fu5c1 74 AY---YRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126 (173)
T ss_dssp TT---TTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSC
T ss_pred Hh---ccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhh
Confidence 22 234899999999886432222 12223332 235899999999999864
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.48 E-value=3.6e-14 Score=115.45 Aligned_cols=129 Identities=20% Similarity=0.218 Sum_probs=76.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccc-----------------------------cccCCCCceEEE---EEEEeCCc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVV-----------------------------RTSDKPGLTQTI---NFFKLGTK 139 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~-----------------------------~vs~~~gtT~~~---~~~~~~~~ 139 (243)
..+|+++|..++|||||+.+|+...... ......|.|.+. .+...+..
T Consensus 24 ~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~ 103 (245)
T d1r5ba3 24 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR 103 (245)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred ceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccccce
Confidence 3579999999999999999995321100 011112233222 12223568
Q ss_pred EEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCC-------ChhhHHHHHHHHhcCCc-EEEEee
Q 026112 140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDHELISLMERSQTK-YQVVLT 211 (243)
Q Consensus 140 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~-------~~~~~~~~~~l~~~~~p-~i~v~n 211 (243)
+.++||||+.+ +.....+....+|++++|+|+.++. ..+..+.+..+...++| +++++|
T Consensus 104 i~~iDtPGH~d-------------f~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iN 170 (245)
T d1r5ba3 104 FSLLDAPGHKG-------------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVIN 170 (245)
T ss_dssp EEECCCCC------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEE
T ss_pred eeeeccccccc-------------chhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEE
Confidence 99999999853 4555555666799999999998764 23567788888888886 889999
Q ss_pred cCCCCCh----HHHHHHHHHHHHHHh
Q 026112 212 KTDTVFP----IDVARRAMQIEESLK 233 (243)
Q Consensus 212 K~D~~~~----~~~~~~~~~l~~~l~ 233 (243)
|+|+... ..+.+..+.+...+.
T Consensus 171 KmD~~~~~~~e~~~~ei~~~l~~~l~ 196 (245)
T d1r5ba3 171 KMDEPSVQWSEERYKECVDKLSMFLR 196 (245)
T ss_dssp CTTSTTCSSCHHHHHHHHHHHHHHHH
T ss_pred cCCCCccchhHHHHHHHHHHHHHHHH
Confidence 9999632 223444444544433
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.48 E-value=4.1e-14 Score=120.00 Aligned_cols=111 Identities=19% Similarity=0.260 Sum_probs=76.7
Q ss_pred CEEEEecCCCCchhHHHHHHhccccccc--------------ccCCCCceEEE---EEEEe----------------CCc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVR--------------TSDKPGLTQTI---NFFKL----------------GTK 139 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~--------------vs~~~gtT~~~---~~~~~----------------~~~ 139 (243)
.+|+++|..++|||||+.+|+...+... .....|.|... .++.. +..
T Consensus 18 RNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 97 (341)
T d1n0ua2 18 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL 97 (341)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccceE
Confidence 4799999999999999999974321000 00012223221 12111 134
Q ss_pred EEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 140 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 140 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
+.++||||+.+-. . ........+|++++|||+.+|+..+...+++.+...+.|+++|+||+|..
T Consensus 98 inliDtPGh~dF~--~-----------ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~~p~i~viNKiDr~ 161 (341)
T d1n0ua2 98 INLIDSPGHVDFS--S-----------EVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 161 (341)
T ss_dssp EEEECCCCCCSSC--H-----------HHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred EEEEcCCCcHHHH--H-----------HHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHcCCCeEEEEECcccc
Confidence 8899999987621 1 11111223899999999999999999999999999999999999999964
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.46 E-value=3.7e-14 Score=108.64 Aligned_cols=112 Identities=14% Similarity=0.099 Sum_probs=70.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
.+|+++|.+|+|||||++++.+........+..+.......... ...+.+|||+|.... ..+...++
T Consensus 4 iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~----------~~~~~~~~ 73 (170)
T d1ek0a_ 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF----------ASLAPMYY 73 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhH----------HHHHHHHH
Confidence 58999999999999999999987422333333343222222222 357899999996431 11222333
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHH---hcCCcEEEEeecCCCCC
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTDTVF 217 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~---~~~~p~i~v~nK~D~~~ 217 (243)
.. +|++++|+|.++..+... ..+..... ....|+++|.||+|+..
T Consensus 74 ~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~ 122 (170)
T d1ek0a_ 74 RN---AQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQ 122 (170)
T ss_dssp TT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred hc---cceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeeccccccc
Confidence 33 899999999886422222 12222221 22578999999999753
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=3.1e-14 Score=110.49 Aligned_cols=114 Identities=16% Similarity=0.005 Sum_probs=71.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE---EEEEe--CCcEEEEeCCCCCCCccchHHHHHHHHHH
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~---~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 165 (243)
...+|+++|.+|||||||+|++++... ...+.+|..+. ..... ...+.+||++|.... ..+.
T Consensus 4 ~~iKivviG~~~vGKTsli~~~~~~~f---~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~----------~~~~ 70 (183)
T d1mh1a_ 4 QAIKCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY----------DRLR 70 (183)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSC---CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGG----------TTTG
T ss_pred eeEEEEEECCCCCCHHHHHHHHHhCCC---CcccccceeeceeeeeeccCcceEEEeecccccccc----------hhhh
Confidence 457999999999999999999998731 22333333222 11111 346789999996431 1112
Q ss_pred HHHHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHh--cCCcEEEEeecCCCCChHH
Q 026112 166 KEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFPID 220 (243)
Q Consensus 166 ~~~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~p~i~v~nK~D~~~~~~ 220 (243)
..++ ..+|++++|+|.+...+... ..+...+.. .+.|+++|.||+|+..+..
T Consensus 71 ~~~~---~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~ 126 (183)
T d1mh1a_ 71 PLSY---PQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 126 (183)
T ss_dssp GGGC---TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHH
T ss_pred hhcc---cccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhh
Confidence 2222 33899999999876422222 123444433 2579999999999876543
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=1.1e-13 Score=106.75 Aligned_cols=108 Identities=10% Similarity=0.038 Sum_probs=67.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeC--CcEEEEeCCCCCCCccchHHHHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV 169 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 169 (243)
..+|+++|.+|||||||++++++.. .....+..+.+........+ ..+.+|||+|... .. |+
T Consensus 5 ~~ki~vlG~~~vGKTsLi~~~~~~~-f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~-----------~~----~~ 68 (175)
T d2bmja1 5 ELRLGVLGDARSGKSSLIHRFLTGS-YQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----------AK----FS 68 (175)
T ss_dssp EEEEEEECCTTTTHHHHHHHHHHSC-CCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCC-----------HH----HH
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCC-CCCcCCccceeEEEEeecCceEEEEEEeecccccc-----------cc----cc
Confidence 4799999999999999999999873 22222111111111111123 4688999999643 11 22
Q ss_pred hcccCccEEEEEEeCCCCCChhh-HHHHHHHHh------cCCcEEEEeecCCCCCh
Q 026112 170 STRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 170 ~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~------~~~p~i~v~nK~D~~~~ 218 (243)
+. +|++++|+|.++..+... ..+.+++.. ...|+++|.||.|+...
T Consensus 69 ~~---ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~ 121 (175)
T d2bmja1 69 GW---ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISAS 121 (175)
T ss_dssp HH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSS
T ss_pred cc---cceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchh
Confidence 22 899999999876422222 233444432 24689999999998543
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.46 E-value=1.5e-14 Score=120.90 Aligned_cols=89 Identities=18% Similarity=0.191 Sum_probs=67.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe--------------------CCcEEEEeCCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGF 150 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~--------------------~~~~~liDTpG~~~ 150 (243)
...+|+|+|.||||||||+|+|++. ..+.++++||||.+++.... ...+.++|.||+..
T Consensus 9 ~~~kiGivG~Pn~GKSTlfnalT~~-~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~ 87 (296)
T d1ni3a1 9 NNLKTGIVGMPNVGKSTFFRAITKS-VLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 87 (296)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHS-TTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCC-CCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence 4579999999999999999999987 44678999999988644322 23689999999876
Q ss_pred CccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCC
Q 026112 151 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 186 (243)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~ 186 (243)
..... ..+..+++...+.+|++++|+|+..
T Consensus 88 gA~~g------~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 88 GASTG------VGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CCCSS------SSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccccc------cccHHHHHHHhhccceeEEEEeccC
Confidence 43222 1233456666667999999999754
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.45 E-value=8.1e-13 Score=110.04 Aligned_cols=125 Identities=20% Similarity=0.256 Sum_probs=81.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEE---EEEE--------------------------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK-------------------------------- 135 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~---~~~~-------------------------------- 135 (243)
..|+|+++|..++|||||+|+|+|. ....++..+ ||+.+ ....
T Consensus 25 ~~P~ivvvG~~SsGKSsliNaLlg~-~~lP~~~~~-~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (299)
T d2akab1 25 DLPQIAVVGGQSAGKSSVLENFVGR-DFLPRGSGI-VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTS-CCSCCCSSC-SCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHhCC-CcCCCCCCc-cccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999998 433333333 23211 1100
Q ss_pred --------------------eCCcEEEEeCCCCCCCcc---chHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhh
Q 026112 136 --------------------LGTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 192 (243)
Q Consensus 136 --------------------~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~ 192 (243)
.-..+.++||||+..... ..........+...|+... .+++++|.++...+....
T Consensus 103 ~~~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~--~~~il~v~~a~~~~~~~~ 180 (299)
T d2akab1 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKE--NCLILAVSPANSDLANSD 180 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTST--TEEEEEEEESSSCGGGCH
T ss_pred hhCCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCc--cceeeeecccccchhhhH
Confidence 013588999999875422 1222333445666666542 345666777765554444
Q ss_pred -HHHHHHHHhcCCcEEEEeecCCCCChH
Q 026112 193 -HELISLMERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 193 -~~~~~~l~~~~~p~i~v~nK~D~~~~~ 219 (243)
..+.+.+...+.++++|+||+|...+.
T Consensus 181 ~~~~~~~~~~~~~r~i~Vltk~D~~~~~ 208 (299)
T d2akab1 181 ALKIAKEVDPQGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp HHHHHHHHCTTCSSEEEEEECGGGSCTT
T ss_pred HHHHHHHhCcCCCceeeEEeccccccch
Confidence 456666667778999999999998753
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=8.6e-14 Score=106.28 Aligned_cols=111 Identities=14% Similarity=0.053 Sum_probs=69.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEE--Ee---CCcEEEEeCCCCCCCccchHHHHHHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVK 166 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~--~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 166 (243)
.++|+++|.+|||||||+++++.... ...+.++..+.... .. ...+.+||++|..... ....
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~f---~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~----------~~~~ 69 (167)
T d1c1ya_ 3 EYKLVVLGSGGVGKSALTVQFVQGIF---VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT----------AMRD 69 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC---CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSST----------THHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC---CCccCCccccccceeEEeeeeEEEeccccccCccccc----------cccc
Confidence 36899999999999999999998732 22222222222111 11 3458899999975421 1222
Q ss_pred HHHhcccCccEEEEEEeCCCCCChhh-HHHHHHHH----hcCCcEEEEeecCCCCCh
Q 026112 167 EYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 167 ~~~~~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~~ 218 (243)
.++.. +|++++|+|.++..+... ..++..+. ....|+++|.||+|+...
T Consensus 70 ~~~~~---~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~ 123 (167)
T d1c1ya_ 70 LYMKN---GQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123 (167)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGG
T ss_pred ccccc---cceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccc
Confidence 23333 899999999886422222 23333332 235799999999998754
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=2.1e-13 Score=106.47 Aligned_cols=111 Identities=14% Similarity=0.021 Sum_probs=70.2
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE---EEEe--CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~---~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|+|||||++++++.. ....+.+|..+.. .... ...+.+|||+|.... ..+...
T Consensus 4 iKvvllG~~~vGKTSli~r~~~~~---f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----------~~~~~~ 70 (191)
T d2ngra_ 4 IKCVVVGDGAVGKTCLLISYTTNK---FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY----------DRLRPL 70 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC---CCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------TTTGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhCC---CCCCcCCceeeecceeEeeCCceeeeeccccccchhh----------hhhhhh
Confidence 589999999999999999999873 2233333332221 1111 346889999996431 112222
Q ss_pred HHhcccCccEEEEEEeCCCCCChhhH--HHHHHHHh--cCCcEEEEeecCCCCChH
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~~--~~~~~l~~--~~~p~i~v~nK~D~~~~~ 219 (243)
++. .+|++++|+|.++..+.... .+...+.. .+.|+++|.||+|+....
T Consensus 71 ~~~---~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~ 123 (191)
T d2ngra_ 71 SYP---QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123 (191)
T ss_dssp GCT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCH
T ss_pred ccc---ccceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccc
Confidence 222 38999999998865222221 23333333 368999999999987543
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=99.44 E-value=1.8e-14 Score=119.40 Aligned_cols=86 Identities=23% Similarity=0.237 Sum_probs=60.3
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe--------------------CCcEEEEeCCCCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGFA 151 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~--------------------~~~~~liDTpG~~~~ 151 (243)
..+|+|||.||||||||+|+|++.. +.++++|+||.+++.... ...+.++|.||+...
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~--~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~g 79 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAG--IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CceEEEECCCCCCHHHHHHHHHCCC--CccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCC
Confidence 3689999999999999999999984 678999999988754332 235889999998653
Q ss_pred ccchHHHHHHHHHHHHHHhcccCccEEEEEEeCC
Q 026112 152 YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 185 (243)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~ 185 (243)
.+.. ..+..+++++.+.+|++++|+|+.
T Consensus 80 a~~g------~Glg~~FL~~ir~~d~LihVVr~f 107 (278)
T d1jala1 80 ASKG------EGLGNKFLANIRETDAIGHVVRCF 107 (278)
T ss_dssp HHHH------GGGTCCHHHHHHTCSEEEEEEECS
T ss_pred cccC------CCccHHHHHHHHhccceEEEeecc
Confidence 2211 123445666677799999999864
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.41 E-value=5e-13 Score=111.80 Aligned_cols=124 Identities=20% Similarity=0.285 Sum_probs=74.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEE-----------------------------------
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----------------------------------- 135 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~----------------------------------- 135 (243)
..|+|+++|..++|||||||+|+|. ....++..+ ||+.+....
T Consensus 23 ~lP~ivVvG~~ssGKSSliNaLlG~-~~lP~~~~~-~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (306)
T d1jwyb_ 23 DLPQIVVVGSQSSGKSSVLENIVGR-DFLPRGSGI-VTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (306)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTS-CCCCC---------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCeEEEEeCCCCCHHHHHHHHhCC-CCCCCCCCc-cccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHH
Confidence 4689999999999999999999997 332333322 222111110
Q ss_pred ----------------------------eCCcEEEEeCCCCCCCccch---HHHHHHHHHHHHHHhcccCccEE-EEEEe
Q 026112 136 ----------------------------LGTKLCLVDLPGYGFAYAKE---EVKDAWEELVKEYVSTRVSLKRV-CLLID 183 (243)
Q Consensus 136 ----------------------------~~~~~~liDTpG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~v-~~vvd 183 (243)
.-..+.+|||||+......+ ........++..|+.. ++.+ ++|++
T Consensus 101 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~---~~~~il~v~~ 177 (306)
T d1jwyb_ 101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKK---QNAIIVAVTP 177 (306)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHS---TTEEEEEEEE
T ss_pred HHHHHHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhC---CCceeEEeec
Confidence 02368899999997643221 1223334556666654 6654 45556
Q ss_pred CCCCCC-hhhHHHHHHHHhcCCcEEEEeecCCCCChH
Q 026112 184 TKWGVK-PRDHELISLMERSQTKYQVVLTKTDTVFPI 219 (243)
Q Consensus 184 ~~~~~~-~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~ 219 (243)
+...+. .....+.+.+...+.++++|+||+|.....
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~r~i~Vitk~D~~~~~ 214 (306)
T d1jwyb_ 178 ANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKG 214 (306)
T ss_dssp SSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSS
T ss_pred ccccccccHHHHHHHHhCcCCCeEEEEEeccccccch
Confidence 554433 334566666666678999999999997543
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.40 E-value=9.8e-13 Score=98.71 Aligned_cols=110 Identities=15% Similarity=0.113 Sum_probs=71.9
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV 173 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (243)
+|+++|++|||||||+|+|++. ....+.+..+++..... ..+..+.++|++|...... .......
T Consensus 2 KI~liG~~nvGKSSLln~l~~~-~~~~~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------------~~~~~~~ 66 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND-RLATLQPTWHPTSEELA-IGNIKFTTFDLGGHIQARR-------------LWKDYFP 66 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS-CCCCCCCCCSCEEEEEC-CTTCCEEEEECCCSGGGGG-------------GGGGGCT
T ss_pred EEEEECCCCCCHHHHHHHHhCC-CCCeeeceeeEeEEEec-cCCeeEEEEeeccchhhhh-------------hHhhhhh
Confidence 7999999999999999999998 44555555555543322 2367799999999643111 1111223
Q ss_pred CccEEEEEEeCCCCCChhh-HHHHHHHH----hcCCcEEEEeecCCCCCh
Q 026112 174 SLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 174 ~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~~ 218 (243)
.++.+++++|......... ..+..... ....|++++.||.|+...
T Consensus 67 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~ 116 (166)
T d2qtvb1 67 EVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116 (166)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSC
T ss_pred heeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEecccccccc
Confidence 4899999999876422222 11111111 236789999999999754
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.38 E-value=4.3e-13 Score=103.67 Aligned_cols=110 Identities=16% Similarity=0.132 Sum_probs=67.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEE--EEe---CCcEEEEeCCCCCCCccchHHHHHHHHHHHH
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 167 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~--~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 167 (243)
.+|+++|.+|||||||+++++.... ...+.+|..+... ... ...+.+|||+|..... .....
T Consensus 3 ~KivliG~~~vGKTsli~r~~~~~f---~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------~~~~~ 69 (179)
T d1m7ba_ 3 CKIVVVGDSQCGKTALLHVFAKDCF---PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD----------NVRPL 69 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC---CSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGT----------TTGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCC---CCccCCceeecccccccccceEEeecccccccccccc----------ccccc
Confidence 4789999999999999999998732 2233333222211 111 2467799999964311 11111
Q ss_pred HHhcccCccEEEEEEeCCCCCChhh--HHHHHHHHh--cCCcEEEEeecCCCCCh
Q 026112 168 YVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 168 ~~~~~~~~d~v~~vvd~~~~~~~~~--~~~~~~l~~--~~~p~i~v~nK~D~~~~ 218 (243)
+ ...+|++++|+|.++..+... ..+...+.. .+.|+++|.||+|+...
T Consensus 70 ~---~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~ 121 (179)
T d1m7ba_ 70 S---YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD 121 (179)
T ss_dssp G---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGC
T ss_pred h---hhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEeccccccc
Confidence 2 234899999999876422121 122333322 36899999999998643
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.38 E-value=9.2e-13 Score=99.50 Aligned_cols=137 Identities=18% Similarity=0.116 Sum_probs=79.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
..+|+++|.+|||||||+|++++.. ...+.+..+.+. ......+..+.++|++|...... .....
T Consensus 5 e~kI~ivG~~~vGKSSLi~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~ 69 (169)
T d1upta_ 5 EMRILILGLDGAGKTTILYRLQVGE-VVTTIPTIGFNV-ETVTYKNLKFQVWDLGGLTSIRP-------------YWRCY 69 (169)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSS-CCCCCCCSSEEE-EEEEETTEEEEEEEECCCGGGGG-------------GGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC-Ccceecccceee-eeeccCceEEEEeeccccccccc-------------cchhh
Confidence 3689999999999999999999983 233332222211 22223467889999999754211 11122
Q ss_pred ccCccEEEEEEeCCCCCChhh-HH-HHHHH---HhcCCcEEEEeecCCCCChHHHHHHHHHHH-HHHhhCCCccccCC
Q 026112 172 RVSLKRVCLLIDTKWGVKPRD-HE-LISLM---ERSQTKYQVVLTKTDTVFPIDVARRAMQIE-ESLKANNSLVQPVV 243 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~-~~-~~~~l---~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~-~~l~~~~~~~~pi~ 243 (243)
....+.+++++|......... .. +...+ .....|+++|.||.|+............+. ........+++|+|
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 147 (169)
T d1upta_ 70 YSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTS 147 (169)
T ss_dssp CTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECC
T ss_pred hhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 234789999999765433322 12 22222 123578999999999986543333333322 22233344555654
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.23 E-value=1.7e-11 Score=93.83 Aligned_cols=113 Identities=16% Similarity=0.132 Sum_probs=66.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
...+|+++|.+|||||||+|+|++.. .....+..+.+.... ...+..+..+|++|....... ...
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------------~~~ 76 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDR-LGQHVPTLHPTSEEL-TIAGMTFTTFDLGGHIQARRV-------------WKN 76 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEE-EETTEEEEEEEECC----CCG-------------GGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CcceecccccceeEE-EecccccccccccchhhhhhH-------------Hhh
Confidence 35699999999999999999999983 333334333333322 223567888999996542111 111
Q ss_pred cccCccEEEEEEeCCCCCChhh-HHHHHHHH----hcCCcEEEEeecCCCCCh
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~----~~~~p~i~v~nK~D~~~~ 218 (243)
.....+.+++++|......... ........ ..+.|++++.||.|+...
T Consensus 77 ~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~ 129 (186)
T d1f6ba_ 77 YLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA 129 (186)
T ss_dssp GGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC
T ss_pred hhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCcccc
Confidence 2223899999999765322221 11121121 236899999999998754
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.15 E-value=1e-10 Score=93.46 Aligned_cols=77 Identities=18% Similarity=0.192 Sum_probs=47.2
Q ss_pred CcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHH-----HHHHhcCCcEEEEeec
Q 026112 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI-----SLMERSQTKYQVVLTK 212 (243)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~-----~~l~~~~~p~i~v~nK 212 (243)
..+.++||||..+... +...... +......+.+++++|+.....+...... ....+...|.++|+||
T Consensus 95 ~~~~~id~~g~~~~~~-------~~~~~~~-~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK 166 (244)
T d1yrba1 95 NDYVLIDTPGQMETFL-------FHEFGVR-LMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNK 166 (244)
T ss_dssp CSEEEEECCSSHHHHH-------HSHHHHH-HHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECC
T ss_pred cceeeeccccchhHHH-------HHHHHHH-HHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeec
Confidence 3699999999753110 0011111 1122336789999998776655543222 1223457899999999
Q ss_pred CCCCChHHHH
Q 026112 213 TDTVFPIDVA 222 (243)
Q Consensus 213 ~D~~~~~~~~ 222 (243)
+|+....+..
T Consensus 167 ~D~~~~~~~~ 176 (244)
T d1yrba1 167 VDLLSEEEKE 176 (244)
T ss_dssp GGGCCHHHHH
T ss_pred cccccHHHHH
Confidence 9999876543
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.14 E-value=8e-11 Score=91.48 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=63.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
..+|+++|.+|||||||++++... ....+..|... ..+...+..+.++||+|.... ... ....
T Consensus 2 ~iKivllG~~~vGKTsll~r~~f~---~~~~pTiG~~~-~~~~~~~~~~~~~D~~gq~~~----------~~~---~~~~ 64 (200)
T d1zcba2 2 LVKILLLGAGESGKSTFLKQMRII---HGQDPTKGIHE-YDFEIKNVPFKMVDVGGQRSE----------RKR---WFEC 64 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH---HSCCCCSSEEE-EEEEETTEEEEEEEECC--------------------CTTS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC---CCCCCeeeeEE-EEEeeeeeeeeeecccceeee----------ccc---cccc
Confidence 468999999999999999999432 12223333221 122223678999999996421 111 1122
Q ss_pred ccCccEEEEEEeCCCCCCh--------hhHHHHH----HHH---hcCCcEEEEeecCCCC
Q 026112 172 RVSLKRVCLLIDTKWGVKP--------RDHELIS----LME---RSQTKYQVVLTKTDTV 216 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~--------~~~~~~~----~l~---~~~~p~i~v~nK~D~~ 216 (243)
.+.++.+++++|.+..... ...+... .+. ..+.|+++|+||+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 124 (200)
T d1zcba2 65 FDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLL 124 (200)
T ss_dssp CTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred ccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhh
Confidence 2348899999997653221 1112222 222 2378999999999985
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.05 E-value=2.9e-10 Score=90.39 Aligned_cols=109 Identities=15% Similarity=0.211 Sum_probs=67.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
..+|+++|.+|||||||++.+...+ ..+..|.... .+...+..+.++|++|.... ...|.. +
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~----~~pTiG~~~~-~~~~~~~~~~~~D~~Gq~~~------r~~w~~----~--- 67 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILH----VVLTSGIFET-KFQVDKVNFHMFDVGGQRDE------RRKWIQ----C--- 67 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH----CCCCCSCEEE-EEEETTEEEEEEECCCSTTT------TTGGGG----G---
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCC----cCCCCCeEEE-EEEECcEEEEEEecCcccee------ccchhh----h---
Confidence 3689999999999999999997552 2233343221 12224678999999996531 111211 1
Q ss_pred ccCccEEEEEEeCCCCC--------ChhhHHHH----HHHHh---cCCcEEEEeecCCCCCh
Q 026112 172 RVSLKRVCLLIDTKWGV--------KPRDHELI----SLMER---SQTKYQVVLTKTDTVFP 218 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~--------~~~~~~~~----~~l~~---~~~p~i~v~nK~D~~~~ 218 (243)
...++.+++++|.+... ...-.+.. ..+.. .++|+++++||+|+.+.
T Consensus 68 ~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~ 129 (221)
T d1azta2 68 FNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAE 129 (221)
T ss_dssp CTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHH
T ss_pred cccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhh
Confidence 23489999999975310 11111222 22222 26899999999998643
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.05 E-value=5.5e-11 Score=94.46 Aligned_cols=60 Identities=33% Similarity=0.365 Sum_probs=43.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccc--cccccC----CCCceEEEEEEEeCCcEEEEeCCCCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWG--VVRTSD----KPGLTQTINFFKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~--~~~vs~----~~gtT~~~~~~~~~~~~~liDTpG~~~~ 151 (243)
+...+|+|.+|||||||+|+|.+... ...++. ...||+....+..+....++||||+++-
T Consensus 95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg~iiDTPG~r~~ 160 (225)
T d1u0la2 95 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANL 160 (225)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTC
T ss_pred CCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCcEEEeCCccccc
Confidence 45889999999999999999998632 112222 3448888888888777899999999764
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=2.3e-09 Score=89.91 Aligned_cols=121 Identities=21% Similarity=0.215 Sum_probs=68.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc-----ccccccCCCCceEE-----------------E-EE-E------E-----
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQT-----------------I-NF-F------K----- 135 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~-----~~~~vs~~~gtT~~-----------------~-~~-~------~----- 135 (243)
+.++|+|.|+||||||||+++|.... +++.+..-|.++.+ . .+ . .
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~~ 132 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGAS 132 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccch
Confidence 46899999999999999999998421 22221111111110 0 00 0 0
Q ss_pred ------------eCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCC--hhhHHHHHHHHh
Q 026112 136 ------------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK--PRDHELISLMER 201 (243)
Q Consensus 136 ------------~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~--~~~~~~~~~l~~ 201 (243)
.|..+.++.|.|.+.. + ..+. ..+|.+++|+++..+-. ....-+++
T Consensus 133 ~~~~~~~~~~~~~g~d~iliEtvG~gq~----e-----~~i~-------~~aD~~l~v~~P~~Gd~iq~~k~gi~e---- 192 (327)
T d2p67a1 133 QRARELMLLCEAAGYDVVIVETVGVGQS----E-----TEVA-------RMVDCFISLQIAGGGDDLQGIKKGLME---- 192 (327)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEECCTTH----H-----HHHH-------TTCSEEEEEECC------CCCCHHHHH----
T ss_pred hhhhHHHHHHHhcCCCeEEEeecccccc----c-----hhhh-------hccceEEEEecCCCchhhhhhchhhhc----
Confidence 1356788888887531 0 0111 12899999987655421 11222332
Q ss_pred cCCcEEEEeecCCCCChHHHHHHHHHHHHHHh
Q 026112 202 SQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 233 (243)
Q Consensus 202 ~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~ 233 (243)
.+-++|+||+|+............++..+.
T Consensus 193 --~aDi~VvNKaD~~~~~~~~~~~~~~~~al~ 222 (327)
T d2p67a1 193 --VADLIVINKDDGDNHTNVAIARHMYESALH 222 (327)
T ss_dssp --HCSEEEECCCCTTCHHHHHHHHHHHHHHHH
T ss_pred --cccEEEEEeecccchHHHHHHHHHHHHHhh
Confidence 355899999999987776666666665544
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.93 E-value=5.3e-10 Score=86.45 Aligned_cols=109 Identities=14% Similarity=0.172 Sum_probs=67.2
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (243)
.+|+++|.+|||||||++++..... . ..+.-|... ..+......+.++||+|.... ......++
T Consensus 3 ~Kiv~lG~~~vGKTsll~r~~~~~~-~-~~pTiG~~~-~~~~~~~~~~~~~d~~g~~~~----------~~~~~~~~--- 66 (200)
T d2bcjq2 3 LKLLLLGTGESGKSTFIKQMRIIHG-S-GVPTTGIIE-YPFDLQSVIFRMVDVGGQRSE----------RRKWIHCF--- 66 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTS-S-CCCCCSCEE-EEEECSSCEEEEEECCCSTTG----------GGGGGGGC---
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-C-CCceeeEEE-EEEeccceeeeeccccccccc----------cccccccc---
Confidence 5899999999999999999987632 2 222222211 122223678999999997431 11112222
Q ss_pred cCccEEEEEEeCCCCCC--------hh----hHHHHHHHHh---cCCcEEEEeecCCCCC
Q 026112 173 VSLKRVCLLIDTKWGVK--------PR----DHELISLMER---SQTKYQVVLTKTDTVF 217 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~--------~~----~~~~~~~l~~---~~~p~i~v~nK~D~~~ 217 (243)
..++.+++++|.+.... .. -..+...+.. .+.|+++++||+|+..
T Consensus 67 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~ 126 (200)
T d2bcjq2 67 ENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLE 126 (200)
T ss_dssp SSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHH
T ss_pred cccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhh
Confidence 33899999999754211 00 1233344432 3689999999999753
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.89 E-value=8.4e-10 Score=84.91 Aligned_cols=105 Identities=14% Similarity=0.136 Sum_probs=64.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR 172 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (243)
.+|+++|..|||||||++.+...+ .. ..|. ....+......+.+|||+|.... ..+...|+.
T Consensus 3 ~KivllG~~~vGKTsl~~r~~~~~-~~----t~~~-~~~~~~~~~~~~~i~D~~Gq~~~----------~~~~~~~~~-- 64 (195)
T d1svsa1 3 VKLLLLGAGESGKSTIVKQMKIIH-EA----GTGI-VETHFTFKDLHFKMFDVGGQRSE----------RKKWIHCFE-- 64 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH-SC----CCSE-EEEEEEETTEEEEEEEECCSGGG----------GGGGGGGCT--
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC-CC----CccE-EEEEEEeeeeeeeeecccccccc----------ccchhhccc--
Confidence 589999999999999999998762 11 1121 11222233678999999996431 122223333
Q ss_pred cCccEEEEEEeCCCCCCh--------hhH----HHHHHHH---hcCCcEEEEeecCCCC
Q 026112 173 VSLKRVCLLIDTKWGVKP--------RDH----ELISLME---RSQTKYQVVLTKTDTV 216 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~~~~--------~~~----~~~~~l~---~~~~p~i~v~nK~D~~ 216 (243)
.++++++|+|....... ... .+...+. ....|+++++||+|+.
T Consensus 65 -~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~ 122 (195)
T d1svsa1 65 -GVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 122 (195)
T ss_dssp -TCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred -CCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhh
Confidence 38999999986432111 111 1222222 2357999999999963
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.87 E-value=3e-10 Score=90.46 Aligned_cols=59 Identities=31% Similarity=0.467 Sum_probs=37.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhccccc--ccccCC----CCceEEEEEEEeCCcEEEEeCCCCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGV--VRTSDK----PGLTQTINFFKLGTKLCLVDLPGYGFA 151 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~--~~vs~~----~gtT~~~~~~~~~~~~~liDTpG~~~~ 151 (243)
+...+|+|.+|||||||+|+|.+.... ..++.. ..||+....+..+ .-.++||||+++-
T Consensus 97 ~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~-gg~iiDTPG~r~~ 161 (231)
T d1t9ha2 97 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSSL 161 (231)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEET-TEEEESSCSCSSC
T ss_pred cceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecC-CCEEEECCccccc
Confidence 457789999999999999999987321 122222 2366666555555 3568899999764
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=98.50 E-value=4.8e-08 Score=81.62 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=22.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~ 114 (243)
..++|+|.|.||||||||+++|..
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHH
Confidence 467999999999999999999985
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=98.46 E-value=4.7e-07 Score=70.79 Aligned_cols=75 Identities=17% Similarity=0.202 Sum_probs=40.0
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 216 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~ 216 (243)
+..+.+|||||.............+..+... ...+-+++|+|+..+.... ..+.......+. --+++||.|..
T Consensus 94 ~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~-----~~~~~~~LVl~a~~~~~~~-~~~~~~~~~~~~-~~lI~TKlDet 166 (211)
T d1j8yf2 94 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEA-----IKPDEVTLVIDASIGQKAY-DLASKFNQASKI-GTIIITKMDGT 166 (211)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHH-----HCCSEEEEEEEGGGGGGHH-HHHHHHHHHCTT-EEEEEECTTSC
T ss_pred CCceEEEecCCcCccchhhHHHHHHHHHHhh-----cCCceEEEEEecccCcchH-HHHhhhhcccCc-ceEEEecccCC
Confidence 3579999999964211111111111222211 1257789999987653222 233344444433 34679999987
Q ss_pred Ch
Q 026112 217 FP 218 (243)
Q Consensus 217 ~~ 218 (243)
..
T Consensus 167 ~~ 168 (211)
T d1j8yf2 167 AK 168 (211)
T ss_dssp SC
T ss_pred Cc
Confidence 54
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.42 E-value=8.3e-07 Score=69.99 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=22.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+.|..+|.|..|||||||+|.|+..
T Consensus 2 ~iPv~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 2 PIAVTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence 4678899999999999999999875
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=98.35 E-value=3.6e-07 Score=71.60 Aligned_cols=76 Identities=16% Similarity=0.182 Sum_probs=39.7
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcc-cCccEEEEEEeCCCCCChhh-HHHHHHHHhcCCcEEEEeecCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR-VSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTD 214 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~~~p~i~v~nK~D 214 (243)
+..+.||||||.... .......+..+........ ...+-+++|+|+..+ ..+ ..+....... .+--+++||.|
T Consensus 93 ~~d~ilIDTaGr~~~--d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~-~~~~lI~TKlD 167 (213)
T d1vmaa2 93 NKDVVIIDTAGRLHT--KKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAV-NVTGIILTKLD 167 (213)
T ss_dssp TCSEEEEEECCCCSC--HHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHS-CCCEEEEECGG
T ss_pred CCCEEEEeccccccc--hHHHHHHHHHHHhhhhhccccccceeEEeeccccC--cchhhhhhhhcccc-CCceEEEeccc
Confidence 457899999996431 1111222222222211111 114678999998754 222 2333433443 34456789999
Q ss_pred CCC
Q 026112 215 TVF 217 (243)
Q Consensus 215 ~~~ 217 (243)
...
T Consensus 168 e~~ 170 (213)
T d1vmaa2 168 GTA 170 (213)
T ss_dssp GCS
T ss_pred CCC
Confidence 764
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=98.34 E-value=1.3e-06 Score=68.04 Aligned_cols=77 Identities=21% Similarity=0.226 Sum_probs=41.7
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHH-hcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYV-STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDT 215 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~ 215 (243)
+..+.+|||||.... .......+..+.+... ......+-+++|+|+..+. ..-..+.......+.. -+++||.|.
T Consensus 88 ~~d~ilIDTaGr~~~--d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~-~~~~~~~~~~~~~~~~-~lI~TKlDe 163 (207)
T d1okkd2 88 GYDLLFVDTAGRLHT--KHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ-NGLEQAKKFHEAVGLT-GVIVTKLDG 163 (207)
T ss_dssp TCSEEEECCCCCCTT--CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT-HHHHHHHHHHHHHCCS-EEEEECTTS
T ss_pred CCCEEEcCccccchh--hHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCc-hHHHHHHHhhhccCCc-eEEEeccCC
Confidence 457999999996432 1212222222222111 1112357789999998663 2223444444544444 557899997
Q ss_pred CC
Q 026112 216 VF 217 (243)
Q Consensus 216 ~~ 217 (243)
..
T Consensus 164 t~ 165 (207)
T d1okkd2 164 TA 165 (207)
T ss_dssp SC
T ss_pred CC
Confidence 64
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=98.24 E-value=1.7e-06 Score=67.38 Aligned_cols=72 Identities=24% Similarity=0.221 Sum_probs=40.7
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHH-HhcCCcEEEEeecCCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM-ERSQTKYQVVLTKTDT 215 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l-~~~~~p~i~v~nK~D~ 215 (243)
+..+.+|||||.... .......+..+.. ....+-+++|+|+..+ .......... +..+. --+++||.|.
T Consensus 92 ~~d~vlIDTaGr~~~--d~~~~~el~~~~~-----~~~~~~~llv~~a~~~--~~~~~~~~~f~~~~~~-~~~I~TKlDe 161 (207)
T d1ls1a2 92 ARDLILVDTAGRLQI--DEPLMGELARLKE-----VLGPDEVLLVLDAMTG--QEALSVARAFDEKVGV-TGLVLTKLDG 161 (207)
T ss_dssp TCCEEEEECCCCSSC--CHHHHHHHHHHHH-----HHCCSEEEEEEEGGGT--HHHHHHHHHHHHHTCC-CEEEEECGGG
T ss_pred cCcceeecccccchh--hhhhHHHHHHHHh-----hcCCceEEEEeccccc--hhHHHHHHHHHhhCCC-CeeEEeecCc
Confidence 457899999996432 1212222232222 1236889999998755 4444433333 33333 3467899997
Q ss_pred CCh
Q 026112 216 VFP 218 (243)
Q Consensus 216 ~~~ 218 (243)
...
T Consensus 162 ~~~ 164 (207)
T d1ls1a2 162 DAR 164 (207)
T ss_dssp CSS
T ss_pred ccc
Confidence 643
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=98.23 E-value=8.5e-06 Score=63.39 Aligned_cols=77 Identities=18% Similarity=0.162 Sum_probs=40.5
Q ss_pred CCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh-cccCccEEEEEEeCCCCCChhh-HHHHHHHHhcCCcEEEEeecCC
Q 026112 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS-TRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTD 214 (243)
Q Consensus 137 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~~~p~i~v~nK~D 214 (243)
+..+.+|||||.... .....+.+..+.+.... .....+-+++|+|+..+ ..+ ..+.......+ +--+++||.|
T Consensus 91 ~~d~ilIDTaGr~~~--d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~~-~~~lIlTKlD 165 (211)
T d2qy9a2 91 NIDVLIADTAGRLQN--KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVG-LTGITLTKLD 165 (211)
T ss_dssp TCSEEEECCCCCGGG--HHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHHHHSC-CCEEEEECCT
T ss_pred CCCEEEeccCCCccc--cHHHHHHHHHHHHHHhhhcccCcceeeeehhcccC--cchHHHHhhhhhccC-CceEEEeecC
Confidence 347899999996421 11112222332221111 11124678999998755 333 23444444443 4456789999
Q ss_pred CCCh
Q 026112 215 TVFP 218 (243)
Q Consensus 215 ~~~~ 218 (243)
....
T Consensus 166 e~~~ 169 (211)
T d2qy9a2 166 GTAK 169 (211)
T ss_dssp TCTT
T ss_pred CCCC
Confidence 8643
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.23 E-value=7.3e-08 Score=74.69 Aligned_cols=118 Identities=14% Similarity=-0.002 Sum_probs=59.0
Q ss_pred EEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEe-C-CcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G-TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~-~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
.|+++|.||+||||+.++|+.... ......+..+.|...... + ....-.+.++.. ....................
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~-~~~~~~~~~~~D~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 80 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN-FIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNE--EGLKIRKQCALAALNDVRKF 80 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCH--HHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-hcCCCCeEEcccceehhhccccccccccccccc--cchhhHHHHHHHHHHHHHHH
Confidence 478889999999999999987521 111111111111100000 0 000000111100 00011111111222222222
Q ss_pred ccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCC
Q 026112 172 RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 214 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D 214 (243)
.......++++|+..........+.+.+...+.+++++.++++
T Consensus 81 ~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 123 (213)
T d1bifa1 81 LSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICV 123 (213)
T ss_dssp HHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCC
T ss_pred HHhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeecc
Confidence 2224556678898876666666777778888899999888876
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=1.6e-05 Score=64.53 Aligned_cols=60 Identities=25% Similarity=0.302 Sum_probs=42.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccccccC-CCCceEEEEEEEe------CCcEEEEeCCCCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFFKL------GTKLCLVDLPGYGFA 151 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~-~~gtT~~~~~~~~------~~~~~liDTpG~~~~ 151 (243)
...|+++|+.++|||+|+|.|++......+++ ...+|+.+-.+.. +..+.++||.|+.+.
T Consensus 32 v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~ 98 (277)
T d1f5na2 32 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 98 (277)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred EEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccccc
Confidence 45789999999999999999999743222222 2346666544321 456999999998764
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=97.95 E-value=7.2e-06 Score=66.42 Aligned_cols=54 Identities=13% Similarity=0.148 Sum_probs=42.9
Q ss_pred ccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHH
Q 026112 172 RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 227 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~ 227 (243)
...+|+|++|+|+..+++..+..+.+.++ ++|+++|+||+|+.++.......+.
T Consensus 13 i~~~DvIl~V~DaR~P~ss~~~~l~~~~~--~Kp~IlVlNK~DLv~~~~~~~w~~~ 66 (273)
T d1puja_ 13 LKLIDIVYELVDARIPMSSRNPMIEDILK--NKPRIMLLNKADKADAAVTQQWKEH 66 (273)
T ss_dssp GGGCSEEEEEEETTSTTTTSCHHHHHHCS--SSCEEEEEECGGGSCHHHHHHHHHH
T ss_pred HHhCCEEEEEEECCCCCCCCCHHHHHHHc--CCCeEEEEECccCCchHHHHHHHHH
Confidence 34499999999999988888877766664 6899999999999987655444433
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.74 E-value=0.00017 Score=57.85 Aligned_cols=95 Identities=16% Similarity=0.215 Sum_probs=51.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCC-ccchHHHHHHHHHHHHHHhc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA-YAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~-~~~~~~~~~~~~~~~~~~~~ 171 (243)
.++++||+||+|||+++..|...- .-...|..-. +..+.-+|+..+... ....+ |+..+...+..
T Consensus 40 ~n~lLVG~~GvGKTalv~~la~ri---~~~~vp~~l~-------~~~i~~l~~~~liag~~~~g~----~e~r~~~i~~~ 105 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAEGLAWRI---VQGDVPEVMA-------DCTIYSLDIGSLLAGTKYRGD----FEKRFKALLKQ 105 (268)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH---HHTCSCGGGT-------TCEEEECCCC---CCCCCSSC----HHHHHHHHHHH
T ss_pred CCcEEECCCCCcHHHHHHHHHHHH---HhCCcccccc-------cceeEEeeechHhccCccchh----HHHHHHHHHHH
Confidence 488999999999999999998761 1222232222 223444555544321 12222 33333333444
Q ss_pred ccCccEEEEEEeCCCCC------ChhhHHHHHHHHh
Q 026112 172 RVSLKRVCLLIDTKWGV------KPRDHELISLMER 201 (243)
Q Consensus 172 ~~~~d~v~~vvd~~~~~------~~~~~~~~~~l~~ 201 (243)
....+-+++++|.-+.+ ......+.+.+++
T Consensus 106 ~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp 141 (268)
T d1r6bx2 106 LEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKP 141 (268)
T ss_dssp HSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSS
T ss_pred hhccCCceEEecchHHHhcCCCCCCccccHHHHhhH
Confidence 44466678888854432 1223556666654
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.72 E-value=7.9e-06 Score=60.38 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=21.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.|.|+|+|++|||||||++.|...
T Consensus 2 ~Pvi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 2 IPLLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 478999999999999999999863
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.62 E-value=0.0002 Score=53.50 Aligned_cols=90 Identities=13% Similarity=0.073 Sum_probs=51.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
....|+++|.|||||||+...++...+.. .++.--+.. . .........++.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~~~~~~----------------------~i~~D~~~~---~----~~~~~~~~~~l~ 63 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLVSAGYV----------------------HVNRDTLGS---W----QRCVSSCQAALR 63 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTGGGTCE----------------------EEEHHHHCS---H----HHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCCE----------------------EEchHHHHH---H----HHHHHHHHHHHH
Confidence 44578899999999999999887652111 111000110 0 111223333333
Q ss_pred cccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEEEEeecCC
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 214 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D 214 (243)
.. ..+|+|...........+++..+..+.++.+|.=.+|
T Consensus 64 ~g-----~~vIiD~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~~ 102 (172)
T d1yj5a2 64 QG-----KRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCAT 102 (172)
T ss_dssp TT-----CCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred CC-----CCceeeCcCCCHHHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 22 2356787765444445677777888888877764444
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.62 E-value=1.3e-05 Score=59.86 Aligned_cols=23 Identities=22% Similarity=0.541 Sum_probs=21.2
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+|+|+|++|+|||||++.+++.
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~~ 23 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHhc
Confidence 37999999999999999999985
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.35 E-value=4.9e-05 Score=57.37 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=27.6
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~ 132 (243)
.-|+|+|++|+|||||++.|+...........+-||+...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R 43 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPK 43 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC-
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCC
Confidence 3588999999999999999997632223334455666543
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.33 E-value=4.2e-05 Score=56.84 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
..+|+|+|++|+|||||.++|....
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998764
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.32 E-value=4.4e-05 Score=56.26 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=22.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.|+|+++|+|||||||+.+.|...
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999999876
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.28 E-value=0.00041 Score=54.26 Aligned_cols=70 Identities=13% Similarity=0.114 Sum_probs=48.1
Q ss_pred cCccEEEEEEeCCCC-CChhh-HHHHHHHHhcCCcEEEEeecCCCCChHHHHHHHHHHHHHHhhCCCccccC
Q 026112 173 VSLKRVCLLIDTKWG-VKPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 242 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~-~~~~~-~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~~~l~~~l~~~~~~~~pi 242 (243)
.+.|.+++|+.+..+ +.... ..++-.....+++.++|+||+|+....+.......+.+.....+..++++
T Consensus 9 ANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~ 80 (231)
T d1t9ha2 9 CNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLT 80 (231)
T ss_dssp ECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEEC
T ss_pred cccCEEEEEEECCCCCCCHHHHHHHHHHHHHcCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceee
Confidence 458889999987543 33222 23444456678999999999999987776666666666556556666554
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.24 E-value=6.3e-05 Score=56.60 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+|+|++|||||||++.|...
T Consensus 3 ~iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 3 RVVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 46889999999999999999876
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.24 E-value=9e-05 Score=54.66 Aligned_cols=26 Identities=27% Similarity=0.449 Sum_probs=23.5
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+...+|+|+|+|||||||+.+.|...
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 46679999999999999999999876
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=97.15 E-value=9.5e-05 Score=58.50 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=23.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.|+|+|++|||||||++.|+|-.
T Consensus 28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~ 53 (241)
T d2pmka1 28 QGEVIGIVGRSGSGKSTLTKLIQRFY 53 (241)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 45589999999999999999999963
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=97.14 E-value=0.00011 Score=58.29 Aligned_cols=26 Identities=42% Similarity=0.547 Sum_probs=23.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|++-.
T Consensus 27 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 52 (242)
T d1mv5a_ 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (242)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45589999999999999999999863
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.12 E-value=9.2e-05 Score=56.93 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=22.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.++++|+.|||||||++.|+|.
T Consensus 26 ~Gei~~l~G~NGsGKSTLl~~i~gl 50 (200)
T d1sgwa_ 26 KGNVVNFHGPNGIGKTTLLKTISTY 50 (200)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcc
Confidence 3457899999999999999999986
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.12 E-value=0.00012 Score=58.29 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|++-.
T Consensus 40 ~Ge~iaivG~sGsGKSTLl~ll~gl~ 65 (253)
T d3b60a1 40 AGKTVALVGRSGSGKSTIASLITRFY 65 (253)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhccc
Confidence 45589999999999999999999863
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.12 E-value=0.00013 Score=57.23 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=22.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+=.++++|++|||||||++.|.+-.
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~i~gl~ 55 (230)
T d1l2ta_ 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (230)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCcchhhHhccCCC
Confidence 45589999999999999999999863
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.11 E-value=0.0001 Score=54.40 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=19.5
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.++|+|.+|||||||++.|+..
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~ 24 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5689999999999999998763
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.10 E-value=7.6e-05 Score=56.49 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=19.6
Q ss_pred EEEecCCCCchhHHHHHHhcc
Q 026112 95 IAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~ 115 (243)
|+|+|++|||||||++.|+..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999876
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.10 E-value=0.00014 Score=57.06 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|.|-.
T Consensus 25 ~Gei~~liGpsGsGKSTLl~~i~Gl~ 50 (232)
T d2awna2 25 EGEFVVFVGPSGCGKSTLLRMIAGLE 50 (232)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 44588999999999999999999853
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.00014 Score=57.85 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=23.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|++-.
T Consensus 39 ~Ge~vaivG~sGsGKSTLl~li~gl~ 64 (251)
T d1jj7a_ 39 PGEVTALVGPNGSGKSTVAALLQNLY 64 (251)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhccc
Confidence 45589999999999999999999864
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.06 E-value=0.00013 Score=55.01 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=23.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+++|+|+|+|||||||.-..|+...
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999998753
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.06 E-value=0.0012 Score=52.13 Aligned_cols=23 Identities=13% Similarity=0.398 Sum_probs=21.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|++.|+||+|||++.+++++.
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhc
Confidence 46899999999999999999876
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.05 E-value=0.00016 Score=58.54 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=23.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++|+|++|||||||++.|+|..
T Consensus 61 ~Ge~vaivG~nGsGKSTLl~~i~Gl~ 86 (281)
T d1r0wa_ 61 KGEMLAITGSTGSGKTSLLMLILGEL 86 (281)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 45689999999999999999999963
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.05 E-value=0.00013 Score=56.17 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+..|+|+|++|||||||++.|+..
T Consensus 2 G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 2 GTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhh
Confidence 346889999999999999999876
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.03 E-value=0.00019 Score=52.88 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.8
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..+..|.|+|.|||||||+-++|...
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~ 29 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVT 29 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45778999999999999999999865
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.03 E-value=0.00018 Score=56.69 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|.|-.
T Consensus 31 ~Ge~~~liGpsGaGKSTLl~~i~Gl~ 56 (239)
T d1v43a3 31 DGEFLVLLGPSGCGKTTTLRMIAGLE 56 (239)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 44578999999999999999999863
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.97 E-value=0.00016 Score=53.43 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.3
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
|+|+++|.+||||||+-+.|...
T Consensus 2 p~IvliG~~G~GKSTig~~La~~ 24 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLAKA 24 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999876
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.96 E-value=0.00017 Score=51.98 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.4
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.|++.|.||||||||.+.|...
T Consensus 4 lIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5788999999999999998765
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.96 E-value=0.00017 Score=56.82 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.8
Q ss_pred EEEEecCCCCchhHHHHHHhccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.++++|++|||||||++.|.|-.
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 67899999999999999999863
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.95 E-value=0.00013 Score=55.36 Aligned_cols=21 Identities=33% Similarity=0.642 Sum_probs=19.4
Q ss_pred EEEecCCCCchhHHHHHHhcc
Q 026112 95 IAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~ 115 (243)
|+|+|++|||||||.+.|+..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999875
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=96.94 E-value=0.00017 Score=57.44 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=23.1
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.|+|+|++|||||||++.|++-.
T Consensus 43 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 68 (255)
T d2hyda1 43 KGETVAFVGMSGGGKSTLINLIPRFY 68 (255)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhcC
Confidence 45589999999999999999999863
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=96.94 E-value=0.0002 Score=56.51 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=22.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
+=.++++|++|||||||++.|+|-.
T Consensus 29 Ge~~~liG~sGaGKSTll~~i~gl~ 53 (240)
T d1g2912 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 4488999999999999999999873
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=96.94 E-value=0.00017 Score=56.42 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+=.++++|++|||||||++.|+|-.
T Consensus 25 ~Ge~~~liGpsGaGKSTll~~l~Gl~ 50 (229)
T d3d31a2 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (229)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 34578999999999999999999963
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=96.93 E-value=0.00081 Score=56.67 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=20.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.++++||+||+|||+++..|...
T Consensus 44 ~n~llvG~~GvGKtaiv~~la~~ 66 (387)
T d1qvra2 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (387)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999988875
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=96.93 E-value=0.00023 Score=56.08 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=22.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|.|-.
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~i~Gl~ 55 (240)
T d3dhwc1 30 AGQIYGVIGASGAGKSTLIRCVNLLE 55 (240)
T ss_dssp SSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 34588999999999999999999973
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.93 E-value=0.0029 Score=50.05 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=21.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..+++.|+||+|||++.++++..
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHHH
Confidence 45899999999999999999976
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=96.92 E-value=0.00025 Score=55.92 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|+.|||||||++.|+|..
T Consensus 27 ~Gei~glvG~nGaGKSTLl~~l~G~~ 52 (238)
T d1vpla_ 27 EGEIFGLIGPNGAGKTTTLRIISTLI 52 (238)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999999973
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=96.92 E-value=0.00021 Score=56.48 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=22.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|++|||||||++.|+|-.
T Consensus 31 ~Gei~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34588999999999999999999963
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.86 E-value=0.00031 Score=53.10 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=24.1
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhccc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
+..+.|+|+|+|||||||+...|+...
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999999864
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=96.85 E-value=0.00019 Score=56.35 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=22.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+=.++++|++|||||||++.|+|-
T Consensus 24 ~Gei~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 24 AGEILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp TTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3558999999999999999999986
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.85 E-value=0.00035 Score=53.21 Aligned_cols=80 Identities=16% Similarity=0.314 Sum_probs=44.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCC-ccchHHHHHHHHHHHHHHhc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA-YAKEEVKDAWEELVKEYVST 171 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~-~~~~~~~~~~~~~~~~~~~~ 171 (243)
.+++++|+||+|||+++..|... ......|..-+ +..+.-+|+..+... ....+.+..+..++......
T Consensus 44 ~n~lLvG~pGVGKTalv~~LA~r---i~~~~vp~~L~-------~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~~~ 113 (195)
T d1jbka_ 44 NNPVLIGEPGVGKTAIVEGLAQR---IINGEVPEGLK-------GRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQ 113 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH---HHHTCSCGGGT-------TCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHS
T ss_pred CCeEEEecCCcccHHHHHHHHHH---HHhCCCCHHHc-------CceEEEeeHHHHhccCCccHHHHHHHHHHHHHHhcC
Confidence 47899999999999999999875 11222232222 345666776664322 22333444444444332211
Q ss_pred ccCccEEEEEEeCC
Q 026112 172 RVSLKRVCLLIDTK 185 (243)
Q Consensus 172 ~~~~d~v~~vvd~~ 185 (243)
..-+++++|.-
T Consensus 114 ---~~~iILfIDei 124 (195)
T d1jbka_ 114 ---EGNVILFIDEL 124 (195)
T ss_dssp ---TTTEEEEEETG
T ss_pred ---CCcEEEEcchH
Confidence 22366667743
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.82 E-value=0.00026 Score=51.67 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=20.2
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.|++.|+|||||||+.+.|...
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999876
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.82 E-value=0.00037 Score=52.56 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=21.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+.|+|+|+|||||||+...|+...
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3577899999999999999998753
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.81 E-value=0.00026 Score=52.17 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=19.9
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.|.|.|++|+|||||+..+...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999998864
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.80 E-value=0.00027 Score=53.24 Aligned_cols=25 Identities=12% Similarity=0.313 Sum_probs=22.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.++|+|+|+|||||||+...|....
T Consensus 3 Pm~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 3 PLKVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998764
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.77 E-value=0.00022 Score=56.27 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+=.++++|++|||||||++.|.+-.
T Consensus 30 ~Ge~~~iiG~sGsGKSTll~~i~gl~ 55 (242)
T d1oxxk2 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (242)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 45589999999999999999999963
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.75 E-value=0.00041 Score=52.47 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=23.3
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
..++|+|+|+|||||||+-..|+...
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999864
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=96.75 E-value=0.0004 Score=55.31 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=23.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+=.++|+|++|||||||+++|.|-.
T Consensus 27 ~GEi~~iiG~sGsGKSTLl~~i~Gl~ 52 (258)
T d1b0ua_ 27 AGDVISIIGSSGSGKSTFLRCINFLE 52 (258)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 44589999999999999999999863
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.75 E-value=0.00034 Score=55.68 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=22.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhccc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+-.++++|+.|||||||++.|+|..
T Consensus 29 ~Gei~~liG~nGaGKSTLl~~i~Gl~ 54 (254)
T d1g6ha_ 29 KGDVTLIIGPNGSGKSTLINVITGFL 54 (254)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 34578999999999999999999963
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.73 E-value=0.00032 Score=52.17 Aligned_cols=23 Identities=13% Similarity=0.385 Sum_probs=20.7
Q ss_pred EEEEecCCCCchhHHHHHHhccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~ 116 (243)
+|+|+|+|||||||+...|+...
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999997753
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.71 E-value=0.00045 Score=50.57 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....++++|.|||||||+.+.|...
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~ 29 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQ 29 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456778999999999999999875
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.67 E-value=0.00054 Score=51.18 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~ 114 (243)
+...|+|.|.+|||||||.+.|..
T Consensus 21 ~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999975
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.66 E-value=0.00045 Score=51.02 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=20.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+|.|.+||||||+.+.|...
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999753
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.64 E-value=0.0005 Score=49.51 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.3
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.|+|+|++||||||+-..|...
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999876
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.63 E-value=0.00058 Score=50.04 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+..|+|.|+|||||||+.+.|...
T Consensus 4 g~iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 4 GNILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346788999999999999999876
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.58 E-value=0.00099 Score=52.40 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=20.1
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
-|++.|+||+|||||..+|++.
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~ 55 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEE 55 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999886
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.57 E-value=0.0044 Score=48.00 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=36.9
Q ss_pred cCccEEEEEEeCCCC-CChhh-HHHHHHHHhcCCcEEEEeecCCCCChHHHHHHH
Q 026112 173 VSLKRVCLLIDTKWG-VKPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRA 225 (243)
Q Consensus 173 ~~~d~v~~vvd~~~~-~~~~~-~~~~~~l~~~~~p~i~v~nK~D~~~~~~~~~~~ 225 (243)
.+.|.+++|+.+..+ +.... ..++-.....+++.++|+||+|+.++.+.....
T Consensus 9 ANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~ 63 (225)
T d1u0la2 9 ANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVR 63 (225)
T ss_dssp ESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHH
T ss_pred ccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCcccCCHHHHHHHH
Confidence 457989999987653 33222 234555567799999999999999876654443
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=96.54 E-value=0.00063 Score=52.97 Aligned_cols=25 Identities=16% Similarity=0.457 Sum_probs=22.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..+.++|.|+||+||||+.+++++.
T Consensus 34 ~~~~~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 34 PLEHLLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999976
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.52 E-value=0.00057 Score=50.99 Aligned_cols=23 Identities=17% Similarity=0.458 Sum_probs=21.0
Q ss_pred EEEEecCCCCchhHHHHHHhccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~ 116 (243)
+|+|+|+|||||||+...|+...
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999764
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.51 E-value=0.00075 Score=49.32 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+|.|.+||||||+.+.|...
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36778899999999999999886
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.50 E-value=0.0006 Score=56.09 Aligned_cols=23 Identities=13% Similarity=0.393 Sum_probs=21.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+|+|.|.+|+|||||+|+|++.
T Consensus 167 ~nili~G~tgSGKTT~l~al~~~ 189 (323)
T d1g6oa_ 167 KNVIVCGGTGSGKTTYIKSIMEF 189 (323)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCEEEEeeccccchHHHHHHhhh
Confidence 46999999999999999999976
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.50 E-value=0.0005 Score=51.38 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=21.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|.++|.|||||||+-+.|...
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568889999999999999999764
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.49 E-value=0.00055 Score=50.88 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=20.6
Q ss_pred EEEEecCCCCchhHHHHHHhccc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~~ 116 (243)
+|+|+|+|||||||..+.|....
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999998653
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.49 E-value=0.00068 Score=51.13 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=22.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+.|+|+|+|||||||+...|+...
T Consensus 8 ~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 8 SKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999998864
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.49 E-value=0.0013 Score=51.80 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=21.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.-|++.|+||+|||+|.+++.+.
T Consensus 43 ~giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHH
Confidence 35899999999999999999986
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.42 E-value=0.003 Score=49.14 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=23.0
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...+.+++.|+||+||||+..+|+..
T Consensus 50 ~~~~~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 50 GVFRAAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp TSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999986
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.41 E-value=0.00081 Score=50.00 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.3
Q ss_pred CEEEEecCCCCchhHHHHHHhccc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+|+|+|+|||||||+-+.|....
T Consensus 1 m~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 379999999999999999998763
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.38 E-value=0.00078 Score=49.39 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=20.1
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
+|+++|.|||||||+-..|...
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~ 23 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKD 23 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.37 E-value=0.00082 Score=50.47 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=21.5
Q ss_pred CEEEEecCCCCchhHHHHHHhccc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
+.|+|+|+|||||||.-..|+...
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 678999999999999999998753
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.35 E-value=0.001 Score=49.46 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=21.6
Q ss_pred CEEEEecCCCCchhHHHHHHhccc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.+|+|+|+|||||||+...|....
T Consensus 3 mrIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 3 IRMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998763
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.31 E-value=0.001 Score=51.56 Aligned_cols=24 Identities=21% Similarity=0.529 Sum_probs=21.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+.++|.|+||+||||+.++|+..
T Consensus 35 ~~~~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 35 LDHVLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHhc
Confidence 467999999999999999999876
|
| >d1xzpa1 a.24.25.1 (A:118-211,A:372-450) TrmE connector domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Four-helical up-and-down bundle superfamily: TrmE connector domain family: TrmE connector domain domain: TrmE connector domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.27 E-value=9.6e-07 Score=66.90 Aligned_cols=105 Identities=19% Similarity=0.100 Sum_probs=61.1
Q ss_pred ccccCCCchhhHHHHHhhCCCCcceeeeecccccccCCCCCCCCCCChhHHHHHHHhhhhhhhhHHHhhcccCCCCCCCC
Q 026112 13 FRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDL 92 (243)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (243)
..++..+.|.+......+ |..++..++ .+|+.+|||+|..+ .. .+.....+.+................+. .+
T Consensus 22 ~~A~~~l~G~ls~~i~~i--r~~L~~l~a-~iEa~iDf~ee~~~-~~-~~~~~~l~~i~~~l~~li~~~~~g~~l~--~g 94 (173)
T d1xzpa1 22 KLSLRNLKGGLRDFVDSL--RRELIEVLA-EIRVELDYPDEIET-NT-GEVVTRLERIKEKLTEELKKADAGILLN--RG 94 (173)
T ss_dssp HHHHHHHTTHHHHHHHHH--HHHHHHHHH-HHHHHHHSTTTCCC-CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HC
T ss_pred HHHHHHcCCchhHHHHHH--HHHHHHHHH-HHHHhcCCcccccc-cH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hh
Confidence 335555667777777777 777777777 89999999987532 21 1111112222222222222222111111 12
Q ss_pred CEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEE
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~ 132 (243)
. +..|+|||||+|.+.+. ..+++.+++|++..
T Consensus 95 ~-----~vvn~Gkssl~n~~r~~---~~v~~~~~t~~d~i 126 (173)
T d1xzpa1 95 Q-----EIFERGSDSLITNLRQK---QLLENVKGHLEDAI 126 (173)
T ss_dssp H-----HHHHHHTTCSCCSHHHH---HHHHHHHHHHHHHH
T ss_pred h-----cccccccchhhcchhhH---HHHHHHHHHHHHHH
Confidence 2 23399999999999765 67888888888753
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.22 E-value=0.001 Score=49.19 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=18.8
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.|+|.|.+||||||+.+.|...
T Consensus 3 iivi~G~~GsGKTT~~~~La~~ 24 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999754
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.15 E-value=0.0013 Score=50.10 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=20.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+.|+|.|.+|||||||-+.|...
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999988653
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.12 E-value=0.0016 Score=48.88 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+|-|..||||||+++.|...
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999876
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.07 E-value=0.0013 Score=50.19 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.3
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
.|.|+|.|+|||||||+-..|..+.
T Consensus 3 ~piI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 3 APVITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3789999999999999999999764
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.99 E-value=0.002 Score=49.63 Aligned_cols=24 Identities=42% Similarity=0.736 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+.++|.|++|+||||++.+++..
T Consensus 45 ~~~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 45 MPHLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999999875
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.96 E-value=0.0022 Score=50.02 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...++|.|+||+||||+++.++..
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999875
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.96 E-value=0.0021 Score=49.27 Aligned_cols=25 Identities=32% Similarity=0.286 Sum_probs=21.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+..|.|.|.|||||||+-+.|...
T Consensus 23 kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 23 RGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4668999999999999999998753
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.93 E-value=0.0017 Score=47.79 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=19.7
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.|+++|.+||||||+-+.|...
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~ 25 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARA 25 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4778999999999999999875
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.80 E-value=0.0062 Score=48.25 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=22.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhccc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
..-|++.|+||+|||+|.+++++..
T Consensus 41 ~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcchhHHHHHHHHh
Confidence 3468999999999999999999873
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.74 E-value=0.003 Score=48.55 Aligned_cols=24 Identities=42% Similarity=0.703 Sum_probs=21.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+.++|.|++|+||||++.+++..
T Consensus 33 ~~~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 33 LPHMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCChHHHHHHHHHH
Confidence 456899999999999999999864
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.64 E-value=0.0021 Score=50.43 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=18.3
Q ss_pred EEEecCCCCchhHHHHHHhcc
Q 026112 95 IAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~ 115 (243)
+.+.|+||+|||+++++++..
T Consensus 49 l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHH
Confidence 455699999999999999875
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.56 E-value=0.0036 Score=48.02 Aligned_cols=24 Identities=21% Similarity=0.628 Sum_probs=20.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+.+++.|++|+||||+.+.++..
T Consensus 36 ~~~~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 36 MPHMIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCchhhHHHHHHH
Confidence 456899999999999999988764
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.53 E-value=0.0045 Score=48.83 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=21.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.-|++.|+||+|||+|.+++...
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeEEecCCCCCchHHHHHHHHH
Confidence 35899999999999999999987
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.52 E-value=0.0037 Score=46.64 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=20.6
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...|+|.|.+||||||+.+.|...
T Consensus 3 p~IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 3 PIIIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC
Confidence 467899999999999999988653
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.51 E-value=0.0035 Score=50.91 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=21.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+++|+||+|||.|.++|++.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhc
Confidence 46889999999999999999876
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.51 E-value=0.0038 Score=47.86 Aligned_cols=24 Identities=42% Similarity=0.720 Sum_probs=21.2
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.|.++|.|++|+||||+..+++..
T Consensus 35 ~~~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 35 LPHLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp CCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHHH
Confidence 456899999999999999999875
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.40 E-value=0.0044 Score=48.27 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.1
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+|.|++|+|||||++.++..
T Consensus 30 ~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 30 PITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Confidence 47889999999999999988754
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.21 E-value=0.0052 Score=47.60 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=21.6
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..+.++|.|++|+||||+..+++..
T Consensus 32 ~~~~lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 32 DLPHLLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999999998874
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.20 E-value=0.0035 Score=50.37 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=17.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~ 114 (243)
..|.|+|.|.+||||||+.++|..
T Consensus 3 k~pIIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 3 KHPIISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH
Confidence 357899999999999999998764
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.13 E-value=0.0012 Score=49.07 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=17.4
Q ss_pred EEEEecCCCCchhHHHHHHh
Q 026112 94 EIAFAGRSNVGKSSMLNALT 113 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~ 113 (243)
..+|+|+.||||||++.+|.
T Consensus 26 ~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 26 VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHHHSCCSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 44678999999999999986
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.08 E-value=0.0052 Score=46.23 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.6
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
-|+|-|..||||||+++.|...
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~ 23 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998864
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.02 E-value=0.0057 Score=46.47 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=21.4
Q ss_pred CEEEEecCCCCchhHHHHHHhccc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~~ 116 (243)
..|+|-|+|||||||.-..|+...
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578888999999999999999864
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.91 E-value=0.0058 Score=46.96 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.9
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+|-|..||||||+++.|...
T Consensus 3 k~I~ieG~dGsGKST~~~~L~~~ 25 (241)
T d1p5zb_ 3 KKISIEGNIAAGKSTFVNILKQL 25 (241)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999875
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.87 E-value=0.013 Score=47.61 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=20.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...++++|+||+|||.|..+|...
T Consensus 52 ~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 52 VGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCcchhHHHHHHHHhh
Confidence 347899999999999999998864
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.75 E-value=0.0095 Score=45.33 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=19.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~ 114 (243)
+.-|+|-|..||||||+++.|..
T Consensus 3 G~lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 3 GALIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH
Confidence 45688889999999998888765
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.65 E-value=0.0092 Score=48.35 Aligned_cols=25 Identities=32% Similarity=0.264 Sum_probs=21.2
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~ 114 (243)
...+.|+|.|.+|||||||-+.|..
T Consensus 78 k~P~iIGIaG~sgSGKSTla~~L~~ 102 (308)
T d1sq5a_ 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCCcHHHHHHHH
Confidence 3557889999999999999888764
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.60 E-value=0.01 Score=44.84 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.3
Q ss_pred CEEEEecCCCCchhHHHHHHhc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~ 114 (243)
.-|+|-|..||||||+++.|..
T Consensus 3 kfIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 3 KYIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp CEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3588889999999999998875
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=94.53 E-value=0.032 Score=40.44 Aligned_cols=57 Identities=12% Similarity=0.171 Sum_probs=35.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcccccc-cccCCCCceEEEEEEEe-CCcEEEEeCCCCCC
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQWGVV-RTSDKPGLTQTINFFKL-GTKLCLVDLPGYGF 150 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~~~~~-~vs~~~gtT~~~~~~~~-~~~~~liDTpG~~~ 150 (243)
+-.|++.|.-|||||||...++..-... .|+.-.++ -++.|.. +..+.-+|.=-+.+
T Consensus 33 g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~--l~~~Y~~~~~~i~H~DlYRl~~ 91 (158)
T d1htwa_ 33 AIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYT--LVEEYNIAGKMIYHFDLYRLAD 91 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTT--CEEEEEETTEEEEEEECTTCSC
T ss_pred CeEEEEecCCCccHHHHHHHHHhhcccccccCCCceE--EEEeeccCCceEEEEEEeccCC
Confidence 4578899999999999999998763211 12111111 1344432 45677888877654
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.49 E-value=0.064 Score=40.37 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=19.2
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
-++|.|++|+||||+...++..
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~ 47 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRY 47 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHh
Confidence 4899999999999999987763
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.49 E-value=0.0069 Score=48.38 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=17.5
Q ss_pred EEEEecCCCCchhHHHHHHh
Q 026112 94 EIAFAGRSNVGKSSMLNALT 113 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~ 113 (243)
.-+|+|+.||||||++.||.
T Consensus 26 lnvlvG~NgsGKS~iL~Ai~ 45 (308)
T d1e69a_ 26 VTAIVGPNGSGKSNIIDAIK 45 (308)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 45788999999999999883
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=94.47 E-value=0.011 Score=48.97 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.0
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
....+++.|+||+|||+|.++|++.
T Consensus 153 ~~~~~~~~g~~~~gk~~~~~~~~~~ 177 (362)
T d1svma_ 153 KKRYWLFKGPIDSGKTTLAAALLEL 177 (362)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCeEEEECCCCCCHHHHHHHHHHH
Confidence 3458899999999999999999875
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.45 E-value=0.032 Score=43.00 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=19.0
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.++|.|++|+||||+...++..
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~ 57 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKG 57 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4788999999999999888754
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.38 E-value=0.0099 Score=45.08 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.2
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+.|+|+|.+||||||..+.|...
T Consensus 4 ~iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEEECCCcCCHHHHHHHHHHC
Confidence 47899999999999999988754
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.26 E-value=0.01 Score=49.95 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=21.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
--|+|.|++|+||||++.+++..
T Consensus 159 GliLvtGpTGSGKSTTl~~~l~~ 181 (401)
T d1p9ra_ 159 GIILVTGPTGSGKSTTLYAGLQE 181 (401)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEEcCCCCCccHHHHHHhhh
Confidence 47899999999999999999885
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.21 E-value=0.011 Score=43.95 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=20.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+.=|+|.|++|+||||+.-.|...
T Consensus 14 g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 14 GLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHc
Confidence 446899999999999999888876
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.19 E-value=0.011 Score=43.93 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=20.9
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+.=|+|.|++|+|||||.-.|...
T Consensus 15 g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 15 GVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 446899999999999999888876
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.16 E-value=0.012 Score=44.46 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=19.7
Q ss_pred CEEEEecCCCCchhHHHHHHhc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~ 114 (243)
+.|+|.|..||||||+.+.|..
T Consensus 3 ~iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998864
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.07 E-value=0.016 Score=46.34 Aligned_cols=23 Identities=26% Similarity=0.115 Sum_probs=19.2
Q ss_pred CCCEEEEecCCCCchhHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALT 113 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~ 113 (243)
..+.|+|.|.+|||||||-..|.
T Consensus 26 ~P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 26 CPLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEeECCCCCCHHHHHHHHH
Confidence 34688999999999999987664
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=94.03 E-value=0.24 Score=36.50 Aligned_cols=58 Identities=10% Similarity=0.012 Sum_probs=32.0
Q ss_pred ccEEEEEEeCCCCCChhhHHHHHHHHhcCCc-EEEEeecCCCCChHHHHHHHHHHHHHHh
Q 026112 175 LKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARRAMQIEESLK 233 (243)
Q Consensus 175 ~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D~~~~~~~~~~~~~l~~~l~ 233 (243)
...+++|++.............+.+...+.+ .-+|+|+.|...+. ..+..+.+++.++
T Consensus 138 ~~~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~gvv~N~~~~~~~~-~~~~~~~l~~~~g 196 (224)
T d1byia_ 138 QLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKR-HAEYMTTLTRMIP 196 (224)
T ss_dssp TCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSCCTT-HHHHHHHHHHHSS
T ss_pred cceeeEEEeeccchhHHHHHHHHHHhccCCccEEEEEeCcCCCchH-HHHHHHHHHHHhC
Confidence 3556667765543222223445555565655 56889998865432 2334455665543
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.02 E-value=0.015 Score=43.19 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=20.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.+.|.|+||+|||+|...++..
T Consensus 22 ~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 22 TGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 3557899999999999998877754
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.99 E-value=0.011 Score=48.95 Aligned_cols=19 Identities=32% Similarity=0.625 Sum_probs=16.9
Q ss_pred EEEecCCCCchhHHHHHHh
Q 026112 95 IAFAGRSNVGKSSMLNALT 113 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~ 113 (243)
-+|+|+.|+||||++.+|.
T Consensus 28 ~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 28 TSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4688999999999999984
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.99 E-value=0.015 Score=42.82 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.0
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+.-|+|.|++|+||||+.-.|...
T Consensus 15 g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 15 GVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHc
Confidence 457899999999999999888876
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.90 E-value=0.037 Score=46.98 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..+|+++|+||||||-|.++|.+.
T Consensus 49 ksNILliGPTGvGKTlLAr~LAk~ 72 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIARRLAKL 72 (443)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cccEEEECCCCCCHHHHHHHHHHH
Confidence 448999999999999999999874
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.85 E-value=0.016 Score=44.52 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=19.3
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
-|+|=|..||||||+++.|...
T Consensus 4 ~IviEG~~GsGKST~~~~L~~~ 25 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5677799999999999999864
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=93.70 E-value=0.017 Score=47.81 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
...+++++|+||||||-|.++|+..
T Consensus 67 p~~niLfiGPTGvGKTElAk~LA~~ 91 (364)
T d1um8a_ 67 SKSNILLIGPTGSGKTLMAQTLAKH 91 (364)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcceeeeCCCCccHHHHHHHHHhh
Confidence 4568999999999999999999754
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.41 E-value=0.026 Score=42.93 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=20.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+.-|+|-|..||||||+++.|...
T Consensus 3 Gk~I~iEG~DGsGKST~~~~L~~~ 26 (214)
T d1tmka_ 3 GKLILIEGLDRTGKTTQCNILYKK 26 (214)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHH
Confidence 456899999999999999988753
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.40 E-value=0.023 Score=43.27 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.6
Q ss_pred EEEecCCCCchhHHHHHHhcc
Q 026112 95 IAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 95 I~ivG~~naGKSSLin~L~~~ 115 (243)
+.+.|++|+|||.|+++++..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999999876
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.26 E-value=0.022 Score=43.31 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=20.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.+.|.|+||+|||+|...++-.
T Consensus 33 ~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 33 TGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4558899999999999999777654
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=93.21 E-value=0.021 Score=43.10 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.1
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.-.+++.|++|+|||+|.++|++-
T Consensus 53 kn~i~~~GP~~TGKS~f~~sl~~~ 76 (205)
T d1tuea_ 53 KNCLVFCGPANTGKSYFGMSFIHF 76 (205)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHH
T ss_pred ceEEEEECCCCccHHHHHHHHHHH
Confidence 357899999999999999988875
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=92.91 E-value=0.016 Score=47.09 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.3
Q ss_pred EEEEecCCCCchhHHHHHHhc
Q 026112 94 EIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~ 114 (243)
.|+++|+||+|||+|..+|.+
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~ 50 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAA 50 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 689999999999999999875
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.87 E-value=0.096 Score=39.46 Aligned_cols=66 Identities=11% Similarity=0.029 Sum_probs=42.7
Q ss_pred CcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcEE-EEeecCCCC
Q 026112 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTV 216 (243)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~i-~v~nK~D~~ 216 (243)
..+.++|||+-.. ......+ ..+|.+++++.....-.....++++.+++.+.|+. +|+|+.|..
T Consensus 112 ~d~IiiD~~~~~~------------~~~~~~l---~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~giv~N~~~~~ 176 (237)
T d1g3qa_ 112 FDFILIDCPAGLQ------------LDAMSAM---LSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp CSEEEEECCSSSS------------HHHHHHH---TTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred CCEEEEccccccc------------ccchhhh---hhhhcccccccccceecchhhHHHHHHhhhhhhhhhhhhcccccc
Confidence 5899999998532 0111112 23899999987653211223456677777888876 899999876
Q ss_pred Ch
Q 026112 217 FP 218 (243)
Q Consensus 217 ~~ 218 (243)
..
T Consensus 177 ~~ 178 (237)
T d1g3qa_ 177 DR 178 (237)
T ss_dssp TT
T ss_pred cc
Confidence 43
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=92.69 E-value=0.055 Score=43.68 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=19.5
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.++++|++|+|||.+.+.|...
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~ 76 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAAT 76 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHHH
Confidence 6789999999999999988764
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=92.56 E-value=0.033 Score=42.69 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=20.1
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.|+|.|..||||||+.+.|...
T Consensus 3 iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999765
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.13 E-value=0.098 Score=41.14 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.4
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|+|+|..|.|||||...++..
T Consensus 45 ~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 45 FFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47889999999999999988765
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=92.00 E-value=0.04 Score=44.69 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=19.3
Q ss_pred EEEEecCCCCchhHHHHHHhcc
Q 026112 94 EIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 94 ~I~ivG~~naGKSSLin~L~~~ 115 (243)
.++++|+||+|||.|.++|.+.
T Consensus 125 ~~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 125 MVIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEEEECSSSSCHHHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHHH
Confidence 4556799999999999999986
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.91 E-value=0.038 Score=42.24 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=19.9
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.+.|.|+||+|||+|.-.++..
T Consensus 35 ~G~~~li~G~pGsGKT~~~lq~~~~ 59 (254)
T d1pzna2 35 TQAITEVFGEFGSGKTQLAHTLAVM 59 (254)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457889999999999998666543
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=91.75 E-value=0.045 Score=41.72 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=20.3
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+-.++|.|+||+|||+|...++..
T Consensus 26 gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 26 DSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 457889999999999999777764
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=91.74 E-value=0.043 Score=42.91 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=18.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~ 114 (243)
+-.++|.|+||+|||||+..++-
T Consensus 35 G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 35 GEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 33678999999999999866653
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=91.26 E-value=0.048 Score=44.38 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=21.5
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..+|+|=|.-|+||||+++.|...
T Consensus 5 ~lrI~IEG~iGsGKSTl~~~L~~~ 28 (331)
T d1osna_ 5 VLRIYLDGAYGIGKTTAAEEFLHH 28 (331)
T ss_dssp EEEEEEEESSSSCTTHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999876
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.03 E-value=0.75 Score=33.96 Aligned_cols=107 Identities=7% Similarity=0.034 Sum_probs=59.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCCCCccchHHHHHHHHHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS 170 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 170 (243)
..+.+++.|++|+|||++...|...-. ..... .+++..+...|- ...-+.++. +......
T Consensus 14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~-~~~~~-------------h~D~~~i~~~~~--~I~Id~IR~----i~~~~~~ 73 (198)
T d2gnoa2 14 EGISILINGEDLSYPREVSLELPEYVE-KFPPK-------------ASDVLEIDPEGE--NIGIDDIRT----IKDFLNY 73 (198)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHHH-TSCCC-------------TTTEEEECCSSS--CBCHHHHHH----HHHHHTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHh-ccccC-------------CCCEEEEeCCcC--CCCHHHHHH----HHHHHhh
Confidence 467999999999999999998886410 10111 134555654442 122333332 2222212
Q ss_pred cccCccEEEEEEeCCCCCChhh-HHHHHHHHhc--CCcEEEEeecCCCCC
Q 026112 171 TRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVF 217 (243)
Q Consensus 171 ~~~~~d~v~~vvd~~~~~~~~~-~~~~~~l~~~--~~p~i~v~nK~D~~~ 217 (243)
.......=++++|..+.++... ..+++.++.- +.-++++.|..+.+-
T Consensus 74 ~~~~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll 123 (198)
T d2gnoa2 74 SPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLL 123 (198)
T ss_dssp CCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred CcccCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChhhCH
Confidence 2122344567777665555544 3677777753 344667767666543
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.02 E-value=0.59 Score=36.46 Aligned_cols=41 Identities=15% Similarity=0.094 Sum_probs=28.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~ 148 (243)
.+..+.|.|++++|||+|.-.++... . . .+..+.++||-|-
T Consensus 59 ~g~i~e~~G~~~~GKT~l~l~~~~~~--q-~--------------~g~~~vyIDtE~~ 99 (269)
T d1mo6a1 59 RGRVIEIYGPESSGKTTVALHAVANA--Q-A--------------AGGVAAFIDAEHA 99 (269)
T ss_dssp SSSEEEEECSSSSSHHHHHHHHHHHH--H-H--------------TTCEEEEEESSCC
T ss_pred cceeEEEecCCCcHHHHHHHHHHHHH--h-c--------------CCCEEEEEECCcc
Confidence 45578899999999999975555431 1 1 1345778899884
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=90.90 E-value=0.054 Score=45.16 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=19.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..++|+|.||+|||++++.++..
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~ 73 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYT 73 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHHHH
Confidence 36899999999999999877654
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=90.86 E-value=0.077 Score=41.75 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=20.8
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.-.+.+.|++++|||+|+++|...
T Consensus 104 ~n~~~l~G~~~tGKS~f~~~i~~~ 127 (267)
T d1u0ja_ 104 RNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHH
Confidence 447889999999999999998864
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.84 E-value=0.058 Score=40.74 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=19.7
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
+-.+.|.|+||+|||+|...++..
T Consensus 34 G~l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 34 QSVTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 457789999999999998777643
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=90.63 E-value=0.071 Score=39.99 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=18.4
Q ss_pred CCCEEEEecCCCCchhHHHHHHh
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALT 113 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~ 113 (243)
.+-.+.|.|+||+|||+|.-.++
T Consensus 25 ~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 25 IGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHH
Confidence 35578899999999999975544
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.58 E-value=0.06 Score=37.05 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=22.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.++.|.+.|.+|+||||+-++|...
T Consensus 5 qgf~i~~tg~~~~gk~~ia~al~~~ 29 (122)
T d1g8fa3 5 QGFSIVLGNSLTVSREQLSIALLST 29 (122)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred cceEEEEeCCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999664
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.49 E-value=0.078 Score=40.30 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=20.5
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-.+.|.|+||+|||+|.-.++..
T Consensus 36 ~G~~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 36 SMAITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4557899999999999998777643
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=90.48 E-value=0.048 Score=44.36 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=20.4
Q ss_pred CCEEEEecCCCCchhHHHHHHhcc
Q 026112 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..+|.|=|.-|+||||+++.|...
T Consensus 4 ~lrI~IEG~iGsGKTTl~~~La~~ 27 (329)
T d1e2ka_ 4 LLRVYIDGPHGMGKTTTTQLLVAL 27 (329)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC-
T ss_pred ceEEEEECCcCCCHHHHHHHHHHH
Confidence 357889999999999999999765
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=90.26 E-value=0.078 Score=43.12 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=21.0
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+|.|=|.-|+||||+++.|...
T Consensus 7 ~rI~iEG~iGsGKSTl~~~L~~~ 29 (333)
T d1p6xa_ 7 VRIYLDGVYGIGKSTTGRVMASA 29 (333)
T ss_dssp EEEEEECSTTSSHHHHHHHHHSG
T ss_pred EEEEEECCccCCHHHHHHHHHHH
Confidence 57889999999999999999876
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=89.88 E-value=0.65 Score=34.46 Aligned_cols=66 Identities=18% Similarity=0.123 Sum_probs=38.8
Q ss_pred CcEEEEeCCCCCCCccchHHHHHHHHHHHHHHhcccCccEEEEEEeCCCCCChhhHHHHHHHHhcCCcE-EEEeecCCCC
Q 026112 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDTV 216 (243)
Q Consensus 138 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~vvd~~~~~~~~~~~~~~~l~~~~~p~-i~v~nK~D~~ 216 (243)
..+.++|||+.... . ....+. .+|.+++|+.....-.......+..++..+.+. -+|+|+.+..
T Consensus 110 ~D~viiD~~~~~~~---~-----~~~~l~-------~ad~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 174 (232)
T d1hyqa_ 110 TDILLLDAPAGLER---S-----AVIAIA-------AAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL 174 (232)
T ss_dssp CSEEEEECCSSSSH---H-----HHHHHH-------HSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred cceeeecccccccc---h-----hHHHhh-------hhheeeeeccccccchhhhhhhhhhhhhcccccccccccccccc
Confidence 57899999996431 0 011111 189999998764211111234555566667774 4789999865
Q ss_pred Ch
Q 026112 217 FP 218 (243)
Q Consensus 217 ~~ 218 (243)
..
T Consensus 175 ~~ 176 (232)
T d1hyqa_ 175 GI 176 (232)
T ss_dssp TH
T ss_pred cc
Confidence 44
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=89.47 E-value=0.11 Score=40.20 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=18.2
Q ss_pred CEEEEecCCCCchhHHHHHHhc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~ 114 (243)
-..+|+|.+|+|||+|.-.|+-
T Consensus 30 ~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 30 TVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 3677899999999999876654
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=89.21 E-value=0.071 Score=41.90 Aligned_cols=16 Identities=13% Similarity=0.243 Sum_probs=13.6
Q ss_pred EEEEecCCCCchhHHH
Q 026112 94 EIAFAGRSNVGKSSML 109 (243)
Q Consensus 94 ~I~ivG~~naGKSSLi 109 (243)
.++|+|.||+||||.+
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 3678899999999865
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=88.21 E-value=0.099 Score=41.45 Aligned_cols=15 Identities=20% Similarity=0.415 Sum_probs=13.2
Q ss_pred EEEecCCCCchhHHH
Q 026112 95 IAFAGRSNVGKSSML 109 (243)
Q Consensus 95 I~ivG~~naGKSSLi 109 (243)
++|.|.+|+||||.+
T Consensus 27 ~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 27 LLIMAGAGSGKTRVL 41 (318)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEEecCCccHHHHH
Confidence 778899999999875
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=88.04 E-value=0.14 Score=41.91 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=17.0
Q ss_pred CCEEEEecCCCCchhHHHHHH
Q 026112 92 LPEIAFAGRSNVGKSSMLNAL 112 (243)
Q Consensus 92 ~~~I~ivG~~naGKSSLin~L 112 (243)
.+.++|.|+||+||||++..+
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~~ 183 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAKL 183 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHHH
T ss_pred CCeEEEEcCCCCCceehHHHH
Confidence 457788899999999987543
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.42 E-value=2.6 Score=32.92 Aligned_cols=25 Identities=16% Similarity=0.092 Sum_probs=20.7
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcc
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
.+-+++++|.+|+|||+|+-.+...
T Consensus 67 ~GQr~~If~~~g~GKt~ll~~~~~~ 91 (285)
T d2jdia3 67 RGQRELIIGDRQTGKTSIAIDTIIN 91 (285)
T ss_dssp TTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEeecCCCCChHHHHHHHHHh
Confidence 4668999999999999998666544
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=86.87 E-value=0.22 Score=39.49 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=22.7
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhcc
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..+-+++|+|.+|+|||+|+..+...
T Consensus 41 grGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 41 GRGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp BTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred cCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence 45679999999999999999888874
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=86.61 E-value=0.43 Score=36.92 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=17.7
Q ss_pred CEEEEecCCCCchhHHHHHHhcc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~~ 115 (243)
..|.+.|+-|+||||+--.|...
T Consensus 9 ~~i~~sGKGGVGKTTvaa~lA~~ 31 (296)
T d1ihua1 9 PYLFFTGKGGVGKTSISCATAIR 31 (296)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCcChHHHHHHHHHHH
Confidence 45667799999999987666543
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=85.83 E-value=1.3 Score=34.42 Aligned_cols=42 Identities=17% Similarity=0.107 Sum_probs=29.8
Q ss_pred CCCEEEEecCCCCchhHHHHHHhcccccccccCCCCceEEEEEEEeCCcEEEEeCCCCC
Q 026112 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYG 149 (243)
Q Consensus 91 ~~~~I~ivG~~naGKSSLin~L~~~~~~~~vs~~~gtT~~~~~~~~~~~~~liDTpG~~ 149 (243)
.+..+.+.|++++|||+|.-.++... .. .|..+.++||=|-.
T Consensus 56 ~g~itei~G~~~sGKT~l~l~~~~~a--qk---------------~g~~v~yiDtE~~~ 97 (268)
T d1xp8a1 56 RGRITEIYGPESGGKTTLALAIVAQA--QK---------------AGGTCAFIDAEHAL 97 (268)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HH---------------TTCCEEEEESSCCC
T ss_pred CceEEEEecCCccchHHHHHHHHHHH--Hh---------------CCCEEEEEECCccC
Confidence 34477899999999999987766652 11 13457888998743
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=83.78 E-value=0.31 Score=33.32 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=16.3
Q ss_pred CEEEEecCCCCchhHHHHHHh
Q 026112 93 PEIAFAGRSNVGKSSMLNALT 113 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~ 113 (243)
...++.+++|+|||+++-.++
T Consensus 9 ~~~ll~apTGsGKT~~~~~~~ 29 (136)
T d1a1va1 9 QVAHLHAPTGSGKSTKVPAAY 29 (136)
T ss_dssp EEEEEECCTTSCTTTHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHH
Confidence 355778999999999885444
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=83.75 E-value=1.6 Score=34.03 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=19.5
Q ss_pred CCCCEEEEecCCCCchhHHHHHHh
Q 026112 90 PDLPEIAFAGRSNVGKSSMLNALT 113 (243)
Q Consensus 90 ~~~~~I~ivG~~naGKSSLin~L~ 113 (243)
..+-+++|+|.+|+|||+|+-.+.
T Consensus 65 g~GQr~~Ifg~~g~GKt~l~~~~~ 88 (276)
T d1fx0a3 65 GRGQRELIIGDRQTGKTAVATDTI 88 (276)
T ss_dssp BTTCBCBEEESSSSSHHHHHHHHH
T ss_pred cCCceEeeccCCCCChHHHHHHHH
Confidence 346689999999999999986543
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=82.05 E-value=0.51 Score=36.00 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=18.7
Q ss_pred CEEEEecCCCCchhHHHHHHhc
Q 026112 93 PEIAFAGRSNVGKSSMLNALTR 114 (243)
Q Consensus 93 ~~I~ivG~~naGKSSLin~L~~ 114 (243)
..++|.|+..+||||+++.+.-
T Consensus 42 ~~~iiTGpN~~GKSt~lk~i~l 63 (234)
T d1wb9a2 42 RMLIITGPNMGGKSTYMRQTAL 63 (234)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEeccCchhhHHHHHHHHH
Confidence 4578889999999999988764
|