Citrus Sinensis ID: 026121

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQLRQQESN
ccccHHHHHHHHHccccccccccccHHHHHHcccccccHHHHHHHHHHHccccEEEEcccccccccccccccccccHHHHccccEEEEcccccccccHHHHHHHHHHccEEEEEEccccccccEEcccccccccccccHHHHHHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
ccccHHHHHHHHHcccccEEEcHHHHHHHHHcccccHHHHHHHHHHHHHcccEEEEEcccccccccccccEcccHcHHHHHcccEEEEEccHHHHHcHHHHHHHHHHcccEEEEEcccccccEEEccccccccEccccHHHHHHHHHHHHHcccccEEEEEccccHHHcccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
MRLSTEELERLAKLGSKAQKTARRDIAHVVAtrgngattVSATMFFASMVGIpvfvtggiggvhrhgehtmdissdltelgrtpvAVVSAGIKSILDIPRTLEYLETHGVCVAayktnefpafftetsgskvpcrvdspedcARLIDVNMKLklgsglvigvpiprehaasgRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQLRQQESN
MRLSTEELERLAKlgskaqktarrdIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFtetsgskvpcrvDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQLRQQESN
MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQLRQQESN
************************DIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAI**********NITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALA********
MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVA***L******
********ERLAKLG********RDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQLRQQESN
*RLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQLRQQ***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQLRQQESN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query243 2.2.26 [Sep-21-2011]
C0ZIY1308 Pseudouridine-5'-phosphat yes no 0.971 0.766 0.526 2e-63
Q8NYD0307 Pseudouridine-5'-phosphat yes no 0.950 0.752 0.537 5e-62
B1HV79304 Pseudouridine-5'-phosphat yes no 0.967 0.773 0.538 8e-61
Q7MZE1312 Pseudouridine-5'-phosphat yes no 0.942 0.733 0.541 4e-60
Q8RCT3307 Pseudouridine-5'-phosphat yes no 0.975 0.771 0.525 5e-60
Q1M4T3309 Pseudouridine-5'-phosphat yes no 0.962 0.757 0.543 3e-59
A7GCK7307 Pseudouridine-5'-phosphat yes no 0.975 0.771 0.489 4e-59
Q01RY8299 Pseudouridine-5'-phosphat yes no 0.946 0.769 0.515 2e-57
Q5L078301 Pseudouridine-5'-phosphat yes no 0.897 0.724 0.534 3e-57
A9BJN0306 Pseudouridine-5'-phosphat yes no 0.938 0.745 0.493 8e-57
>sp|C0ZIY1|PSUG_BREBN Pseudouridine-5'-phosphate glycosidase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=psuG PE=3 SV=1 Back     alignment and function desciption
 Score =  241 bits (616), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 127/241 (52%), Positives = 163/241 (67%), Gaps = 5/241 (2%)

Query: 3   LSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGG 62
           L+  ELE  A       K +RRD A+++A+   GATTV+ATM  A M GI +F TGGIGG
Sbjct: 70  LTDSELEEFAT-NKNVAKVSRRDFAYILASGKIGATTVAATMIAAEMAGIHMFATGGIGG 128

Query: 63  VHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPA 122
           VHR GE T D+S+DLTEL +T VAVV AG KSILDI RTLEYLET GV V  Y+T+EFP+
Sbjct: 129 VHREGEITWDVSADLTELAQTDVAVVCAGAKSILDIGRTLEYLETQGVPVVGYRTDEFPS 188

Query: 123 FFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSA 182
           FF   SG  V  R+D+PE+  ++++    L L  G++I  P+P   A +   IE+ IQ A
Sbjct: 189 FFARKSGFGVDMRIDTPEEVGKMMNTKWDLGLKGGMIIANPVPESDALNHEEIEAVIQKA 248

Query: 183 LREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQLRQQES 242
           L EA+E NI G   TPF+L +V +LT G SLA+NIALVK+NA + AKI+VA     Q+E+
Sbjct: 249 LAEAKENNIAGKQVTPFMLDKVKKLTEGKSLATNIALVKHNAEVAAKIAVAY----QKEA 304

Query: 243 N 243
           N
Sbjct: 305 N 305
Catalyzes the hydrolysis of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil.
Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) (taxid: 358681)
EC: 3EC: .EC: 2EC: .EC: -EC: .EC: -
>sp|Q8NYD0|PSUG_STAAW Pseudouridine-5'-phosphate glycosidase OS=Staphylococcus aureus (strain MW2) GN=psuG PE=3 SV=1 Back     alignment and function description
>sp|B1HV79|PSUG_LYSSC Pseudouridine-5'-phosphate glycosidase OS=Lysinibacillus sphaericus (strain C3-41) GN=psuG PE=3 SV=1 Back     alignment and function description
>sp|Q7MZE1|PSUG2_PHOLL Pseudouridine-5'-phosphate glycosidase 2 OS=Photorhabdus luminescens subsp. laumondii (strain TT01) GN=psuG2 PE=3 SV=1 Back     alignment and function description
>sp|Q8RCT3|PSUG_THETN Pseudouridine-5'-phosphate glycosidase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=psuG PE=3 SV=1 Back     alignment and function description
>sp|Q1M4T3|PSUG2_RHIL3 Pseudouridine-5'-phosphate glycosidase 2 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=psuG2 PE=3 SV=1 Back     alignment and function description
>sp|A7GCK7|PSUG_CLOBL Pseudouridine-5'-phosphate glycosidase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=psuG PE=3 SV=1 Back     alignment and function description
>sp|Q01RY8|PSUG_SOLUE Pseudouridine-5'-phosphate glycosidase OS=Solibacter usitatus (strain Ellin6076) GN=psuG PE=3 SV=1 Back     alignment and function description
>sp|Q5L078|PSUG_GEOKA Pseudouridine-5'-phosphate glycosidase OS=Geobacillus kaustophilus (strain HTA426) GN=psuG PE=3 SV=1 Back     alignment and function description
>sp|A9BJN0|PSUG_PETMO Pseudouridine-5'-phosphate glycosidase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=psuG PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query243
255551325242 conserved hypothetical protein [Ricinus 0.962 0.966 0.867 1e-117
225435907 346 PREDICTED: pseudouridine-5'-phosphate gl 0.975 0.684 0.869 1e-117
224059266 350 predicted protein [Populus trichocarpa] 0.987 0.685 0.854 1e-115
356532275 485 PREDICTED: pseudouridine-5'-phosphate gl 0.979 0.490 0.819 1e-110
449476124242 PREDICTED: pseudouridine-5'-phosphate gl 0.979 0.983 0.815 1e-110
449442563343 PREDICTED: pseudouridine-5'-phosphate gl 0.979 0.693 0.815 1e-109
357470285 350 Pseudouridine-5'-phosphate glycosidase [ 0.958 0.665 0.819 1e-107
297847396330 indigoidine synthase A family protein [A 0.967 0.712 0.778 1e-103
30694792330 indigoidine synthase A-like protein [Ara 0.967 0.712 0.765 1e-102
9454556324 Unknown protein [Arabidopsis thaliana] 0.967 0.725 0.765 1e-101
>gi|255551325|ref|XP_002516709.1| conserved hypothetical protein [Ricinus communis] gi|223544204|gb|EEF45728.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 203/234 (86%), Positives = 224/234 (95%)

Query: 6   EELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHR 65
           E+LERLA LG +A+KTARRDIA+VVATRGNGATTVSATM+FASMVGI VFVTGGIGGVHR
Sbjct: 2   EDLERLATLGPRAKKTARRDIAYVVATRGNGATTVSATMYFASMVGISVFVTGGIGGVHR 61

Query: 66  HGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFT 125
           HGEHTMD+SSDLTELGRTPVAV+SAG+KSILDIPRTLEYLET GVCVA Y+TNEFPAFFT
Sbjct: 62  HGEHTMDVSSDLTELGRTPVAVISAGVKSILDIPRTLEYLETQGVCVATYQTNEFPAFFT 121

Query: 126 ETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALRE 185
           ETSG K PCRVDSPEDCARLID NMKLKLG+G++I VPIP+EH+ASG +IESAIQSALRE
Sbjct: 122 ETSGCKAPCRVDSPEDCARLIDANMKLKLGNGILIAVPIPKEHSASGNLIESAIQSALRE 181

Query: 186 AREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQLRQ 239
           AR+KNITGNAETPFLLARVNE+TGG+SLASNIALVKNNAL+GAKI+VALAQLR+
Sbjct: 182 ARDKNITGNAETPFLLARVNEVTGGVSLASNIALVKNNALLGAKIAVALAQLRE 235

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225435907|ref|XP_002266954.1| PREDICTED: pseudouridine-5'-phosphate glycosidase [Vitis vinifera] gi|296083913|emb|CBI24301.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224059266|ref|XP_002299797.1| predicted protein [Populus trichocarpa] gi|222847055|gb|EEE84602.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356532275|ref|XP_003534699.1| PREDICTED: pseudouridine-5'-phosphate glycosidase-like [Glycine max] Back     alignment and taxonomy information
>gi|449476124|ref|XP_004154647.1| PREDICTED: pseudouridine-5'-phosphate glycosidase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449442563|ref|XP_004139051.1| PREDICTED: pseudouridine-5'-phosphate glycosidase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357470285|ref|XP_003605427.1| Pseudouridine-5'-phosphate glycosidase [Medicago truncatula] gi|355506482|gb|AES87624.1| Pseudouridine-5'-phosphate glycosidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297847396|ref|XP_002891579.1| indigoidine synthase A family protein [Arabidopsis lyrata subsp. lyrata] gi|297337421|gb|EFH67838.1| indigoidine synthase A family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30694792|ref|NP_564574.2| indigoidine synthase A-like protein [Arabidopsis thaliana] gi|27754328|gb|AAO22617.1| unknown protein [Arabidopsis thaliana] gi|28393889|gb|AAO42352.1| unknown protein [Arabidopsis thaliana] gi|332194438|gb|AEE32559.1| indigoidine synthase A-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|9454556|gb|AAF87879.1|AC012561_12 Unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query243
TAIR|locus:2008081330 AT1G50510 [Arabidopsis thalian 0.967 0.712 0.765 8.1e-92
UNIPROTKB|F1P1N5 677 Gga.26687 "Uncharacterized pro 0.971 0.348 0.588 1.7e-66
ZFIN|ZDB-GENE-060421-6632 700 zgc:136858 "zgc:136858" [Danio 0.979 0.34 0.566 1.2e-65
FB|FBgn0031265 700 CG2794 [Drosophila melanogaste 0.967 0.335 0.546 1.2e-58
UNIPROTKB|Q3AFY5304 psuG "Pseudouridine-5'-phospha 0.967 0.773 0.544 1.5e-58
TIGR_CMR|CHY_0077304 CHY_0077 "indigoidine systhesi 0.967 0.773 0.544 1.5e-58
DICTYBASE|DDB_G0268118 765 DDB_G0268118 "indigoidine synt 0.934 0.296 0.541 4e-58
UNIPROTKB|Q71X89303 psuG "Pseudouridine-5'-phospha 0.946 0.759 0.536 3.7e-55
UNIPROTKB|P33025312 psuG [Escherichia coli K-12 (t 0.942 0.733 0.519 4.9e-53
WB|WBGene00020765 651 T24C12.3 [Caenorhabditis elega 0.967 0.360 0.485 1.3e-52
TAIR|locus:2008081 AT1G50510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
 Identities = 180/235 (76%), Positives = 206/235 (87%)

Query:     3 LSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGG 62
             LS EELERLA LG   QKTA RDIA+VVATRGNGATTVSAT+FFASMVGI VFVTGGIGG
Sbjct:    95 LSEEELERLASLGKSVQKTAGRDIANVVATRGNGATTVSATLFFASMVGIQVFVTGGIGG 154

Query:    63 VHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPA 122
             VHRH  H+MDISSDLT LGRTP+AV+SAG+KSILDIP+TLEYLET  V VAAYK++EFPA
Sbjct:   155 VHRHANHSMDISSDLTALGRTPIAVISAGVKSILDIPKTLEYLETQEVYVAAYKSDEFPA 214

Query:   123 FFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSA 182
             FFTE SG K P RV+SPEDCAR+ID NMKL   +G++  +PIP+ H+A+G +IESA Q A
Sbjct:   215 FFTEKSGCKAPSRVNSPEDCARVIDANMKLNRQAGILFAIPIPKHHSAAGNLIESATQRA 274

Query:   183 LREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQL 237
             L EARE+N+TGNAETPFLLARVNELTGG SLA+NIALVKNNALIG++I+VAL+QL
Sbjct:   275 LTEAREQNVTGNAETPFLLARVNELTGGTSLAANIALVKNNALIGSQIAVALSQL 329
GO:0009507 "chloroplast" evidence=ISM
GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005777 "peroxisome" evidence=IDA
UNIPROTKB|F1P1N5 Gga.26687 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060421-6632 zgc:136858 "zgc:136858" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0031265 CG2794 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q3AFY5 psuG "Pseudouridine-5'-phosphate glycosidase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0077 CHY_0077 "indigoidine systhesis protein, homolog" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0268118 DDB_G0268118 "indigoidine synthase A like protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q71X89 psuG "Pseudouridine-5'-phosphate glycosidase" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] Back     alignment and assigned GO terms
UNIPROTKB|P33025 psuG [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
WB|WBGene00020765 T24C12.3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A5UT22PSUG_ROSS13, ., 2, ., -, ., -0.50460.88060.6881yesno
Q01RY8PSUG_SOLUE3, ., 2, ., -, ., -0.51500.94650.7692yesno
Q46PS3PSUG_CUPPJ3, ., 2, ., -, ., -0.53150.90940.7038yesno
Q5L078PSUG_GEOKA3, ., 2, ., -, ., -0.53420.89710.7242yesno
B8II14PSUG_METNO3, ., 2, ., -, ., -0.52990.88470.6379yesno
Q7MZE1PSUG2_PHOLL3, ., 2, ., -, ., -0.54140.94230.7339yesno
C0ZIY1PSUG_BREBN3, ., 2, ., -, ., -0.52690.97110.7662yesno
B1HV79PSUG_LYSSC3, ., 2, ., -, ., -0.53810.96700.7730yesno
A9GT78PSUG_SORC53, ., 2, ., -, ., -0.54120.89300.6845yesno
A8F8N4PSUG_THELT3, ., 2, ., -, ., -0.38130.95470.8169yesno
Q8NYD0PSUG_STAAW3, ., 2, ., -, ., -0.53780.95060.7524yesno
A6TL60PSUG_ALKMQ3, ., 2, ., -, ., -0.50630.96290.7622yesno
B6IRJ4PSUG_RHOCS3, ., 2, ., -, ., -0.52080.97940.7437yesno
Q1M4T3PSUG2_RHIL33, ., 2, ., -, ., -0.54390.96290.7572yesno
Q8RCT3PSUG_THETN3, ., 2, ., -, ., -0.52520.97530.7719yesno
Q2SM69PSUG_HAHCH3, ., 2, ., -, ., -0.50220.90940.7293yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query243
pfam04227293 pfam04227, Indigoidine_A, Indigoidine synthase A l 1e-135
COG2313310 COG2313, IndA, Uncharacterized enzyme involved in 1e-98
>gnl|CDD|217974 pfam04227, Indigoidine_A, Indigoidine synthase A like protein Back     alignment and domain information 
 Score =  381 bits (981), Expect = e-135
 Identities = 140/232 (60%), Positives = 167/232 (71%)

Query: 3   LSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGG 62
           LS EELERLA+ G    K +RRD+ +V+AT   GATTV+ATM  A + GI VF TGGIGG
Sbjct: 62  LSDEELERLAQAGKDVAKVSRRDLPYVLATGKTGATTVAATMILAHLAGIKVFATGGIGG 121

Query: 63  VHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPA 122
           VHR  E + DIS+DLTEL RTPVAVV AG KSILDIP+TLEYLET GV V  Y T+EFPA
Sbjct: 122 VHRGAEESFDISADLTELARTPVAVVCAGAKSILDIPKTLEYLETQGVPVIGYGTDEFPA 181

Query: 123 FFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSA 182
           F++  SG K P R+DS E+ A  I     L L  G+++  PIP E+A     IE+AI+ A
Sbjct: 182 FYSRDSGFKAPYRLDSAEEIAAAIRARWALGLQGGVLVANPIPEEYAIDREEIEAAIEQA 241

Query: 183 LREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVAL 234
           L EA E+ ITG A TPFLLAR+ ELTGG SL +NIALVKNNA + A+I+VAL
Sbjct: 242 LAEAEEQGITGKAVTPFLLARIAELTGGRSLKANIALVKNNARLAAEIAVAL 293

Indigoidine is a blue pigment synthesised by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown. The recommended name for this protein is now pseudouridine-5'-phosphate glycosidase. Length = 293
>gnl|CDD|225195 COG2313, IndA, Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 243
PF04227293 Indigoidine_A: Indigoidine synthase A like protein 100.0
COG2313310 IndA Uncharacterized enzyme involved in pigment bi 100.0
KOG3009 614 consensus Predicted carbohydrate kinase, contains 100.0
TIGR02643 437 T_phosphoryl thymidine phosphorylase. Thymidine ph 91.47
PRK05820 440 deoA thymidine phosphorylase; Reviewed 90.92
TIGR02644 405 Y_phosphoryl pyrimidine-nucleoside phosphorylase. 90.21
PRK04350 490 thymidine phosphorylase; Provisional 89.02
cd03109134 DTBS Dethiobiotin synthetase (DTBS) is the penulti 87.7
PRK00188339 trpD anthranilate phosphoribosyltransferase; Provi 86.1
PRK06078 434 pyrimidine-nucleoside phosphorylase; Reviewed 84.14
PRK08508279 biotin synthase; Provisional 84.08
TIGR02645 493 ARCH_P_rylase putative thymidine phosphorylase. Me 83.62
PF08659181 KR: KR domain; InterPro: IPR013968 This domain is 83.31
TIGR01245330 trpD anthranilate phosphoribosyltransferase. In ma 83.26
PF13500199 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R 81.42
>PF04227 Indigoidine_A: Indigoidine synthase A like protein; InterPro: IPR007342 Members of this entry catalyze the hydrolysis of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil Back     alignment and domain information 
Probab=100.00  E-value=3.5e-107  Score=742.45  Aligned_cols=234  Identities=63%  Similarity=0.900  Sum_probs=175.8

Q ss_pred             CCCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccchhhh
Q 026121            1 MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTEL   80 (243)
Q Consensus         1 vGLs~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL   80 (243)
                      |||+++||++|++.++++.|+|||||++++++|++||||||+||++||++||+||+||||||||||+++|||||+||+||
T Consensus        60 vGl~~~ele~la~~~~~~~K~s~RDl~~~~a~~~~GaTTVsaTm~lA~~aGI~VfaTGGiGGVHrga~~t~DiSaDL~eL  139 (293)
T PF04227_consen   60 VGLSEEELERLADAGKGVIKVSRRDLAYALAKGLSGATTVSATMILAHLAGIKVFATGGIGGVHRGAEETFDISADLTEL  139 (293)
T ss_dssp             ES--HHHHHHHHHH----EEE-GGGHHHHHHHT--EEE-HHHHHHHHHHTT--EEE-S-B--B-TT---SS-B-HHHHHH
T ss_pred             EcCCHHHHHHHHHhccCCeeecHhhHHHHHhCCCccHhHHHHHHHHHHHcCCCEEEeCCcccCCCCCcCcchhhhHHHHH
Confidence            79999999999997678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEE
Q 026121           81 GRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVI  160 (243)
Q Consensus        81 ~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lv  160 (243)
                      +||||+|||||+|||||||+|||||||+||||+||+||+||+||+|+||+++|||+|+++|+|++++++|+||+++|+||
T Consensus       140 ~rtpv~VV~aG~KsILDi~~TLE~LET~GV~Vvgy~t~~fPaFy~~~Sg~~~~~~~d~~~e~A~~~~~~~~lgl~~g~lv  219 (293)
T PF04227_consen  140 ARTPVAVVCAGAKSILDIPKTLEYLETQGVPVVGYGTDEFPAFYTRSSGFKSPYRVDSPEEAARIIRAHWQLGLPSGVLV  219 (293)
T ss_dssp             TTS-EEEEESBB-TTS-HHHHHHHHHHTT--EEEES-SB--BTTBS--S-B---EE-SHHHHHHHHHHHHHTT--SEEEE
T ss_pred             hcCCceEEEccCcchhchHHHHHHhhcCCeEEEEecCCCCCeeeccCCCCCCCcccCCHHHHHHHHHHHHHhCCCCeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCcCCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHH
Q 026121          161 GVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVAL  234 (243)
Q Consensus       161 anPiP~e~~~~~~~i~~~I~~Al~ea~~~gi~Gk~vTPflL~~i~elT~G~Sl~aNiaLv~nNA~laa~IA~al  234 (243)
                      +||||+|+++|+++|+++|++|++||+++||+||++|||||+||+|+|+|+|+++|++||+|||++|+|||++|
T Consensus       220 anPiP~e~~~~~~~i~~~I~~Al~ea~~~gi~Gk~vTPfLL~~i~e~T~G~Sl~aNialv~nNa~~aa~IA~~l  293 (293)
T PF04227_consen  220 ANPIPEEDAIDGEEIESAIEQALAEAEEQGIRGKAVTPFLLARINELTGGKSLEANIALVKNNARLAAQIAVAL  293 (293)
T ss_dssp             E----GGG---HHHHHHHHHT-----------GGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EccCChHhcCCHHHHHHHHHHHHhhHhhcCCCcccCCHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987

It is also reported to be involved in the synthesis of indigoidine, which is a blue pigment synthesised by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 1VKM_C.
>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only] Back     alignment and domain information
>TIGR02643 T_phosphoryl thymidine phosphorylase Back     alignment and domain information
>PRK05820 deoA thymidine phosphorylase; Reviewed Back     alignment and domain information
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase Back     alignment and domain information
>PRK04350 thymidine phosphorylase; Provisional Back     alignment and domain information
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms Back     alignment and domain information
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed Back     alignment and domain information
>PRK08508 biotin synthase; Provisional Back     alignment and domain information
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase Back     alignment and domain information
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain Back     alignment and domain information
>TIGR01245 trpD anthranilate phosphoribosyltransferase Back     alignment and domain information
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query243
4gij_A335 Crystal Structure Of Pseudouridine Monophosphate Gl 8e-58
4gim_A335 Crystal Structure Of Pseudouridine Monophosphate Gl 4e-57
1vkm_A297 Crystal Structure Of An Indigoidine Synthase A (Idg 1e-28
4ex8_A316 Crystal Structure Of The Prealnumycin C-glycosyntha 5e-28
>pdb|4GIJ|A Chain A, Crystal Structure Of Pseudouridine Monophosphate Glycosidase Complexed With Sulfate Length = 335 Back     alignment and structure 
Iteration: 1

 Score =  219 bits (559), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 119/229 (51%), Positives = 146/229 (63%)
Query: 3   LSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGG 62
           LS EE+E L + G    K +RRD+  VVA   NGATTV++TM  A++ GI VF TGGIGG
Sbjct: 99  LSKEEIELLGREGHNVTKVSRRDLPFVVAAGKNGATTVASTMIIAALAGIKVFATGGIGG 158
Query: 63  VHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPA 122
           VHR  EHT DIS+DL EL  T V VV AG KSILD+  T EYLET GV +  Y+T   PA
Sbjct: 159 VHRGAEHTFDISADLQELANTNVTVVCAGAKSILDLGLTTEYLETFGVPLIGYQTKALPA 218
Query: 123 FFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSA 182
           FF  TS   V  R+DS  + AR + V  +  L  GLV+  PIP + A     I +AI  A
Sbjct: 219 FFCRTSPFDVSIRLDSASEIARAMVVKWQSGLNGGLVVANPIPEQFAMPEHTINAAIDQA 278
Query: 183 LREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKIS 231
           + EA  + + G   TPFLLARV ELTGG SL SNI LV NNA++ ++I+
Sbjct: 279 VAEAEAQGVIGKESTPFLLARVAELTGGDSLKSNIQLVFNNAILASEIA 327
>pdb|4GIM|A Chain A, Crystal Structure Of Pseudouridine Monophosphate Glycosidase Complexed With Pseudouridine 5'-Phosphate Length = 335 Back     alignment and structure
>pdb|1VKM|A Chain A, Crystal Structure Of An Indigoidine Synthase A (Idga)-Like Protein (Tm1464) From Thermotoga Maritima Msb8 At 1.90 A Resolution Length = 297 Back     alignment and structure
>pdb|4EX8|A Chain A, Crystal Structure Of The Prealnumycin C-glycosynthase Alna Length = 316 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query243
1vkm_A297 Conserved hypothetical protein TM1464; indigoidine 4e-74
>1vkm_A Conserved hypothetical protein TM1464; indigoidine synthase A-like fold, structural genomics, joint for structural genomics, JCSG; HET: MSE UNL; 1.90A {Thermotoga maritima} SCOP: c.138.1.1 Length = 297 Back     alignment and structure
 Score =  226 bits (577), Expect = 4e-74
 Identities = 92/236 (38%), Positives = 140/236 (59%), Gaps = 11/236 (4%)

Query: 1   MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGI 60
             +S EELE + + G  A K   R+I  VVA   N ATTVSAT+F +  +GI V VTGG 
Sbjct: 72  AGMSEEELEAMMREG--ADKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGT 129

Query: 61  GGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEF 120
           GGVH      +D+S DLTE+  +   +VS+GIKSILD+  T E LET  + +  ++TNEF
Sbjct: 130 GGVHPG---RVDVSQDLTEMSSSRAVLVSSGIKSILDVEATFEMLETLEIPLVGFRTNEF 186

Query: 121 PAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQ 180
           P FF+  SG +VP R+++ E+  ++ +   +++L   L++  P+P E+      IE  + 
Sbjct: 187 PLFFSRKSGRRVP-RIENVEEVLKIYESMKEMELEKTLMVLNPVPEEYEIPHDEIERLL- 244

Query: 181 SALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQ 236
               E  E  + G   TPFLL ++ E+T G +L +N+AL++ N  +  +I+V L +
Sbjct: 245 ----EKIELEVEGKEVTPFLLKKLVEMTNGRTLKANLALLEENVKLAGEIAVKLKR 296

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query243
4gim_A335 Pseudouridine-5'-phosphate glycosidase; alpha-beta 100.0
4ex8_A316 ALNA; alpha/beta/alpha-domain, C-glycosynthase, di 100.0
1vkm_A297 Conserved hypothetical protein TM1464; indigoidine 100.0
3h5q_A 436 PYNP, pyrimidine-nucleoside phosphorylase; structu 90.18
1vqu_A374 Anthranilate phosphoribosyltransferase 2; 17130499 85.87
2dsj_A 423 Pyrimidine-nucleoside (thymidine) phosphorylase; p 84.32
2tpt_A 440 Thymidine phosphorylase; transferase, salvage path 81.86
1khd_A345 Anthranilate phosphoribosyltransferase; type 3 PRT 80.06
>4gim_A Pseudouridine-5'-phosphate glycosidase; alpha-beta-alpha sandwich fold, hydrolase; HET: PSU; 1.80A {Escherichia coli} PDB: 4gij_A 4gik_A* 4gil_A* Back     alignment and structure
Probab=100.00  E-value=3e-111  Score=777.00  Aligned_cols=238  Identities=50%  Similarity=0.723  Sum_probs=234.7

Q ss_pred             CCCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccchhhh
Q 026121            1 MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTEL   80 (243)
Q Consensus         1 vGLs~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL   80 (243)
                      |||+++|||+||+.++++.|+|||||++++++|++||||||+||++|++|||+||+||||||||||+++|||||+||+||
T Consensus        97 vGL~~~ele~la~~~~~v~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~AGI~VFaTGGIGGVHRgae~t~DISADL~eL  176 (335)
T 4gim_A           97 VGLSKEEIELLGREGHNVTKVSRRDLPFVVAAGKNGATTVASTMIIAALAGIKVFATGGIGGVHRGAEHTFDISADLQEL  176 (335)
T ss_dssp             ESCCHHHHHHHHHHGGGSEEECTTTHHHHHHTTCCEEECHHHHHHHHHHTTCCEEECSCCCCBBTTHHHHCCBCHHHHHH
T ss_pred             EcCCHHHHHHHHhcCCCceeeecccHHHHhhcCCCccccHHHHHHHHHHCCCcEEeeCCcCccCCCCCCCccccchHHHh
Confidence            79999999999976567999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEE
Q 026121           81 GRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVI  160 (243)
Q Consensus        81 ~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lv  160 (243)
                      +||||+|||||+|||||||+|||||||+||||+||+||+||+||+|+||+++|||+|+++|+|++++++|+||+++|+||
T Consensus       177 arTpV~VVcAG~KSILDi~~TLE~LET~GVpVvgy~td~fPaFy~r~Sg~~~~~rvd~~~e~A~i~~~~~~lgl~~g~lv  256 (335)
T 4gim_A          177 ANTNVTVVCAGAASILDLGLTTEYLETFGVPLIGYQTKALPAFFCRTSPFDVSIRLDSASEIARAMVVKWQSGLNGGLVV  256 (335)
T ss_dssp             HHSCCEEEECBCCTTBCHHHHHHHHHHTTCCEEEETCSBCCBTTBSCCSSBCSEEECCHHHHHHHHHHHHHTTCCSCEEE
T ss_pred             ccCCeEEEeecchhhccchhHHHHHHhcCceEEEecCCCCceeeccCCCCcCcceeCCHHHHHHHHHHHHHcCCCCceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCcCCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026121          161 GVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQLR  238 (243)
Q Consensus       161 anPiP~e~~~~~~~i~~~I~~Al~ea~~~gi~Gk~vTPflL~~i~elT~G~Sl~aNiaLv~nNA~laa~IA~al~~~~  238 (243)
                      +||||+|+++|+++|+.+|++|++||+++||+||++|||||++|+|+|+|+||++||+||+|||++|+|||++|++|.
T Consensus       257 anPIP~e~~i~~~~i~~~I~~Al~eA~~~gI~Gk~vTPfLL~~i~elT~G~Sl~aNiaLv~nNA~laa~IA~~l~~L~  334 (335)
T 4gim_A          257 ANPIPEQFAMPEHTINAAIDQAVAEAEAQGVIGKESTPFLLARVAELTGGDSLKSNIQLVFNNAILASEIAKEYQRLA  334 (335)
T ss_dssp             ECCCCGGGCCCHHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             eCCCCchhcCCHHHHHHHHHHHHHHHHHcCCcCCccChHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999974
>4ex8_A ALNA; alpha/beta/alpha-domain, C-glycosynthase, divalent metal ION ligase; 2.10A {Streptomyces SP} PDB: 4ex9_A* Back     alignment and structure
>1vkm_A Conserved hypothetical protein TM1464; indigoidine synthase A-like fold, structural genomics, joint for structural genomics, JCSG; HET: MSE UNL; 1.90A {Thermotoga maritima} SCOP: c.138.1.1 Back     alignment and structure
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus} Back     alignment and structure
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI; 1.85A {Nostoc SP} Back     alignment and structure
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus} Back     alignment and structure
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A Back     alignment and structure
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 243
d1vkma_292 c.138.1.1 (A:) Hypothetical protein TM1464 {Thermo 2e-83
>d1vkma_ c.138.1.1 (A:) Hypothetical protein TM1464 {Thermotoga maritima [TaxId: 2336]} Length = 292 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Indigoidine synthase A-like
superfamily: Indigoidine synthase A-like
family: Indigoidine synthase A-like
domain: Hypothetical protein TM1464
species: Thermotoga maritima [TaxId: 2336]

 Score =  248 bits (635), Expect = 2e-83
 Identities = 91/235 (38%), Positives = 138/235 (58%), Gaps = 11/235 (4%)

Query: 1   MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGI 60
             +S EELE + +    A K   R+I  VVA   N ATTVSAT+F +  +GI V VTGG 
Sbjct: 68  AGMSEEELEAMMR--EGADKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGT 125

Query: 61  GGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEF 120
           GGVH      +D+S DLTE+  +   +VS+GIKSILD+  T E LET  + +  ++TNEF
Sbjct: 126 GGVH---PGRVDVSQDLTEMSSSRAVLVSSGIKSILDVEATFEMLETLEIPLVGFRTNEF 182

Query: 121 PAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQ 180
           P FF+  SG +VP R+++ E+  ++ +   +++L   L++  P+P E+      IE  + 
Sbjct: 183 PLFFSRKSGRRVP-RIENVEEVLKIYESMKEMELEKTLMVLNPVPEEYEIPHDEIERLL- 240

Query: 181 SALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALA 235
               E  E  + G   TPFLL ++ E+T G +L +N+AL++ N  +  +I+V L 
Sbjct: 241 ----EKIELEVEGKEVTPFLLKKLVEMTNGRTLKANLALLEENVKLAGEIAVKLK 291

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query243
d1vkma_292 Hypothetical protein TM1464 {Thermotoga maritima [ 100.0
>d1vkma_ c.138.1.1 (A:) Hypothetical protein TM1464 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Indigoidine synthase A-like
superfamily: Indigoidine synthase A-like
family: Indigoidine synthase A-like
domain: Hypothetical protein TM1464
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4.4e-101  Score=698.81  Aligned_cols=225  Identities=40%  Similarity=0.642  Sum_probs=217.8

Q ss_pred             CCCCHHHHHHHHhcCCCcccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCCccccccccchhhh
Q 026121            1 MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTEL   80 (243)
Q Consensus         1 vGLs~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGIGGVHrgae~t~DiSaDL~eL   80 (243)
                      |||+++|||+|++.  ++.|+|||||++++++|++||||||+||++|++|||+||||||||||||+   +||||+||+||
T Consensus        68 vGl~~~ele~la~~--~~~K~s~rdl~~~~a~~~~gaTTVsaTm~iA~~aGI~VFaTGGIGGVHr~---s~DiSaDL~eL  142 (292)
T d1vkma_          68 AGMSEEELEAMMRE--GADKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGTGGVHPG---RVDVSQDLTEM  142 (292)
T ss_dssp             ESCCHHHHHHHHHH--CCEEECGGGHHHHHHHTCCEEECHHHHHHHHHHHTCCEEECSCBCCBCTT---SSCBCHHHHHH
T ss_pred             ecCCHHHHHHHhhc--cccccccccHHHHHhccccccccHHHHHHHHHhCCCeEEEecCcccccCC---CccccccHhhH
Confidence            69999999999974  68999999999999999999999999999999999999999999999995   89999999999


Q ss_pred             cCCCeEEEecccccccchhhhHhHhhhCCeeEEeeccCCCcceeecCCCcccCccCCCHHHHHHHHHHHHhcCCCCeEEE
Q 026121           81 GRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGLVI  160 (243)
Q Consensus        81 ~rtpV~VVcaG~KsILDi~~TLE~LET~GV~V~gy~td~fPaFy~~~Sg~~~~~r~d~~~e~A~~~~~~~~l~l~~g~lv  160 (243)
                      +||||+|||||+|||||||+|||||||+||||+||+||+||+||+|+||+++| ++|+++|+|++++++|+|++++|+||
T Consensus       143 ~~tpv~vVcaG~KsiLDi~~TlE~LET~gV~Vvgy~t~~fPaF~~~~Sg~~~~-~v~~~~eiA~i~~~~~~lgl~~giLv  221 (292)
T d1vkma_         143 SSSRAVLVSSGIKSILDVEATFEMLETLEIPLVGFRTNEFPLFFSRKSGRRVP-RIENVEEVLKIYESMKEMELEKTLMV  221 (292)
T ss_dssp             TTCCEEEEESBBCTTSCHHHHHHHHHHTTCCEEEESCSBCCBTTBSCCSCBCC-EECSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             hcCCeEEEecccHhhcccHHHHHHHHhcCeeEEeecCCcccceeecCCCCCCC-CcCCHHHHHHHHHHHHHcCCCceEEE
Confidence            99999999999999999999999999999999999999999999999999999 59999999999999999999999999


Q ss_pred             EeCCCcCCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 026121          161 GVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQ  236 (243)
Q Consensus       161 anPiP~e~~~~~~~i~~~I~~Al~ea~~~gi~Gk~vTPflL~~i~elT~G~Sl~aNiaLv~nNA~laa~IA~al~~  236 (243)
                      +||||+++++|.++||++|++     .++||+||++|||||++|+|+|+|+||++||+|++|||++|+|||++|++
T Consensus       222 anPIP~e~~i~~~~ie~~i~~-----a~~~I~GK~vTPFLL~~I~e~T~G~SL~aNiaLi~nNA~lAa~IA~~l~k  292 (292)
T d1vkma_         222 LNPVPEEYEIPHDEIERLLEK-----IELEVEGKEVTPFLLKKLVEMTNGRTLKANLALLEENVKLAGEIAVKLKR  292 (292)
T ss_dssp             ECCCCGGGCCCHHHHHHHHHT-----CCCCCCGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             ECCCCchhhCCHHHHHHHHHH-----HHhCCcCcccCHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999888765     47899999999999999999999999999999999999999999999975