Citrus Sinensis ID: 026125
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 243 | 2.2.26 [Sep-21-2011] | |||||||
| Q9Y7B6 | 349 | 3-methyl-2-oxobutanoate h | yes | no | 0.691 | 0.481 | 0.532 | 1e-44 | |
| Q3A9L0 | 276 | 3-methyl-2-oxobutanoate h | yes | no | 0.674 | 0.594 | 0.503 | 2e-43 | |
| Q5YZ95 | 283 | 3-methyl-2-oxobutanoate h | yes | no | 0.699 | 0.600 | 0.502 | 8e-43 | |
| Q47R98 | 280 | 3-methyl-2-oxobutanoate h | yes | no | 0.716 | 0.621 | 0.491 | 1e-42 | |
| Q7NMK3 | 260 | 3-methyl-2-oxobutanoate h | yes | no | 0.674 | 0.630 | 0.506 | 8e-42 | |
| B8HWP9 | 261 | 3-methyl-2-oxobutanoate h | yes | no | 0.674 | 0.628 | 0.506 | 2e-41 | |
| Q2RM79 | 269 | 3-methyl-2-oxobutanoate h | yes | no | 0.670 | 0.605 | 0.524 | 8e-41 | |
| Q311U7 | 289 | 3-methyl-2-oxobutanoate h | yes | no | 0.588 | 0.494 | 0.562 | 5e-40 | |
| B0TC10 | 276 | 3-methyl-2-oxobutanoate h | yes | no | 0.662 | 0.583 | 0.493 | 5e-40 | |
| A0PXQ3 | 275 | 3-methyl-2-oxobutanoate h | yes | no | 0.662 | 0.585 | 0.506 | 1e-39 |
| >sp|Q9Y7B6|PANB_EMENI 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=panB PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 179 bits (454), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 119/169 (70%), Gaps = 1/169 (0%)
Query: 74 NPNQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTL 133
NP ++VT+ LR +K GEPITM+TA+D+PSA D+AG+D+ LVGDS AMV G T
Sbjct: 60 NPRKKVTMQTLRNLYKKGEPITMLTAHDFPSAHVADAAGMDMILVGDSLAMVALGMQDTS 119
Query: 134 PITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193
+TL++MLVHCR+VAR A+ V DLP G+YE S QA+ +A+RI+KEG + +KLEGG
Sbjct: 120 EVTLDDMLVHCRSVARAAQSAFTVSDLPMGSYEVSPEQALQSAIRIVKEGRVQGVKLEGG 179
Query: 194 SPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVF 242
A + I AGI V+GH+GLTPQ + LGGFR QGK+ T A+K+
Sbjct: 180 E-EMAPAIKRITTAGIPVVGHIGLTPQRQNALGGFRVQGKSTTDALKLL 227
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Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321) EC: 2EC: .EC: 1EC: .EC: 2EC: .EC: 1EC: 1 |
| >sp|Q3A9L0|PANB_CARHZ 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=panB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITL 137
RVT++ L++ + G+ I M+TAYDYPSA+ + AG ++ LVGDS MVV G+D+T+P+T+
Sbjct: 3 RVTVSSLKEMKEAGQKIAMITAYDYPSALFAEEAGAEVLLVGDSLGMVVLGYDSTVPVTM 62
Query: 138 EEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSR 197
EEML H +AV RG+KR ++V D+PF +Y++S A+ A R LKEGG A+KLEGG
Sbjct: 63 EEMLHHVKAVVRGSKRSMVVADMPFMSYQASYTDALYNAGRFLKEGGAQAVKLEGGGEIA 122
Query: 198 ITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVF 242
A+ +V AGI VMGH+GLTPQ+++ LGG++ QGK++ +A K+
Sbjct: 123 ELVAK-LVTAGIPVMGHIGLTPQSVNALGGYKVQGKDLKTAQKLL 166
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Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is tranferred onto alpha-ketoisovalerate to form ketopantoate. Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) (taxid: 246194) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 EC: 1 |
| >sp|Q5YZ95|PANB_NOCFA 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Nocardia farcinica (strain IFM 10152) GN=panB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 173 bits (439), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 87/173 (50%), Positives = 114/173 (65%), Gaps = 3/173 (1%)
Query: 63 ENSVYGGPKPQNPNQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSA 122
E YG +P P ++ + HLRQ +GE M+TAYDY SA + AGI + LVGDSA
Sbjct: 7 ETPAYGAAQPAQPRRKTRIPHLRQMKADGERWAMLTAYDYSSARLFEEAGIPVLLVGDSA 66
Query: 123 AMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182
A VV+G+DTT+PIT++E++ R V RGA L+V DLPFGTYE S QA+ A R +KE
Sbjct: 67 ANVVYGYDTTVPITVDELIPLVRGVVRGAPHALVVADLPFGTYEGSAQQALAAATRFMKE 126
Query: 183 GGMDAIKLEGGSPSRITAARGIV-EAGIAVMGHVGLTPQAISVLGGFRPQGKN 234
GG A+KLEGG R+ ++ AGI VM H+G TPQ+++ LGGFR QG+
Sbjct: 127 GGAHAVKLEGG--ERVAEQIALLTAAGIPVMAHIGFTPQSVNTLGGFRVQGRG 177
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Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is tranferred onto alpha-ketoisovalerate to form ketopantoate. Nocardia farcinica (strain IFM 10152) (taxid: 247156) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 EC: 1 |
| >sp|Q47R98|PANB_THEFY 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Thermobifida fusca (strain YX) GN=panB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 173 bits (438), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 89/181 (49%), Positives = 127/181 (70%), Gaps = 7/181 (3%)
Query: 59 SNIPENSVYGGPKPQNPNQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV 118
S+ P ++YGG + N+RVT+ L + GE M+TAYD +A D AGI + LV
Sbjct: 3 SHTPAPALYGG----SANRRVTVQDLAAAKERGERWPMLTAYDALTARIFDEAGIPVLLV 58
Query: 119 GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVR 178
GDSAAMVV G+D+T+P+TL++M+ AV+R KR L+V DLPFG+Y++ QA+++A R
Sbjct: 59 GDSAAMVVFGYDSTIPVTLDDMIPLTAAVSRATKRALVVADLPFGSYQAGPEQALESAAR 118
Query: 179 ILKEGGMDAIKLEGGSPSRITA-ARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTS 237
++KEGG A+KLEGG R+ A +V AGI VMGH+GLTPQ+++VLGG+R QG++ +
Sbjct: 119 LMKEGGAQAVKLEGG--HRVIAQVEALVSAGIPVMGHIGLTPQSVNVLGGYRVQGRSEEA 176
Query: 238 A 238
A
Sbjct: 177 A 177
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Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is tranferred onto alpha-ketoisovalerate to form ketopantoate. Thermobifida fusca (strain YX) (taxid: 269800) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 EC: 1 |
| >sp|Q7NMK3|PANB_GLOVI 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Gloeobacter violaceus (strain PCC 7421) GN=panB PE=3 SV=2 | Back alignment and function description |
|---|
Score = 170 bits (431), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 83/164 (50%), Positives = 112/164 (68%)
Query: 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLE 138
+++ LR+ + +PI +TA +Y A LD AG+D+ LVGDS +MV GH +TLP+T++
Sbjct: 3 LSIHSLRKLKERAQPIVALTATEYAMARILDQAGVDLLLVGDSLSMVALGHTSTLPVTVD 62
Query: 139 EMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRI 198
E+L HCRAV RG +R LLV DLPFG+YE S QA TA R LKE G+ A+KLEGG P
Sbjct: 63 ELLHHCRAVRRGVERALLVADLPFGSYEQSPQQAFSTATRFLKEAGVQAVKLEGGYPRMT 122
Query: 199 TAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVF 242
+ E+GI V+GH+GLTPQA+ LGG+R QGK +A ++
Sbjct: 123 ETVAFLTESGIPVLGHLGLTPQAVHQLGGYRVQGKTAQAAERLI 166
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Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is tranferred onto alpha-ketoisovalerate to form ketopantoate. Gloeobacter violaceus (strain PCC 7421) (taxid: 251221) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 EC: 1 |
| >sp|B8HWP9|PANB_CYAP4 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=panB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/164 (50%), Positives = 114/164 (69%)
Query: 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLE 138
VT+ L+Q ++G I ++TA+D+ A LD AG+D+ LVGDS AMV GH TLP++L+
Sbjct: 3 VTIPQLQQWKRSGRAIAVLTAWDWLWASLLDQAGVDLILVGDSLAMVALGHKNTLPLSLD 62
Query: 139 EMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRI 198
EML H RAV RG +R L+V DLPFG+Y+ S QAV +A R+LKE A+KLEGG P+ +
Sbjct: 63 EMLHHTRAVCRGVQRALVVCDLPFGSYQESPQQAVRSASRVLKETPAQAVKLEGGYPAMV 122
Query: 199 TAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVF 242
+V AGI V+GHVGLTPQ++ GG+ QGK+V +A ++
Sbjct: 123 ETVTHLVRAGIPVLGHVGLTPQSVHQYGGYPQQGKSVEAAERIL 166
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Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is tranferred onto alpha-ketoisovalerate to form ketopantoate. Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 EC: 1 |
| >sp|Q2RM79|PANB_MOOTA 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Moorella thermoacetica (strain ATCC 39073) GN=panB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 167 bits (422), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 86/164 (52%), Positives = 114/164 (69%), Gaps = 1/164 (0%)
Query: 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITL 137
RVTL L+ + GE ITMVTAYDYPS++ D AG+D+ LVGDS MVV G+ +T+P+T+
Sbjct: 6 RVTLPQLQAMKERGERITMVTAYDYPSSLLADRAGMDMILVGDSLGMVVLGYSSTVPVTM 65
Query: 138 EEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSR 197
+EM+ H +AV R L+V DLPF +Y++S AV A R++KEGG DA+KLEGG +
Sbjct: 66 DEMIHHTKAVVRANPAALVVADLPFLSYQTSVPDAVYNAGRLIKEGGADAVKLEGGQ-AV 124
Query: 198 ITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKV 241
+ R IV AGI VMGH+GLTPQ+ LGGFR QG++ K+
Sbjct: 125 VPTVRAIVNAGIPVMGHLGLTPQSAVQLGGFRVQGRSEAEGEKI 168
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Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is tranferred onto alpha-ketoisovalerate to form ketopantoate. Moorella thermoacetica (strain ATCC 39073) (taxid: 264732) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 EC: 1 |
| >sp|Q311U7|PANB_DESDG 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Desulfovibrio desulfuricans (strain G20) GN=panB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 164 bits (415), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 81/144 (56%), Positives = 104/144 (72%), Gaps = 1/144 (0%)
Query: 89 KNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVA 148
KN + M+TAYDYP+A D G+D+ LVGDS AMVV GH+ TL +TL+EM+ HCRAV
Sbjct: 19 KNTRRLAMLTAYDYPTASIADEGGMDMLLVGDSLAMVVLGHEDTLSVTLDEMIHHCRAVT 78
Query: 149 RGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAG 208
RGA R L+VGDLPF TYE +QA+ +A R+ +EGG+ A+KLEGG +V+AG
Sbjct: 79 RGASRALVVGDLPFMTYEQGPDQAMHSAARLFREGGVRAVKLEGGKEV-APQVEALVKAG 137
Query: 209 IAVMGHVGLTPQAISVLGGFRPQG 232
I VMGH+GLTPQ ++ LGGF+ QG
Sbjct: 138 IPVMGHIGLTPQRVAALGGFKVQG 161
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Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is tranferred onto alpha-ketoisovalerate to form ketopantoate. Desulfovibrio desulfuricans (strain G20) (taxid: 207559) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 EC: 1 |
| >sp|B0TC10|PANB_HELMI 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=panB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 164 bits (415), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 114/162 (70%), Gaps = 1/162 (0%)
Query: 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPIT 136
+++TL ++ K G+ + M+TAYDYP A +D + I+I LVGDS MVV G+D+T+P+T
Sbjct: 3 KKITLPQCKEMKKQGKRLRMITAYDYPFARLVDESEIEIILVGDSLGMVVLGYDSTVPVT 62
Query: 137 LEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS 196
L+EM+ HC+ V RGA L+V D+PFG+Y S A+ A R+LKE G++A+K+EGG+
Sbjct: 63 LDEMIHHCKPVVRGAPNTLVVADMPFGSYNVSKEDAIRNANRMLKESGIEAVKVEGGTRM 122
Query: 197 RITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSA 238
T R +V+AGI VMGH+GLTPQ + LGGF+ QGK +A
Sbjct: 123 APT-VRALVDAGIPVMGHIGLTPQTAAQLGGFKVQGKTEDAA 163
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Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is tranferred onto alpha-ketoisovalerate to form ketopantoate. Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) (taxid: 498761) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 EC: 1 |
| >sp|A0PXQ3|PANB_CLONN 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Clostridium novyi (strain NT) GN=panB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 163 bits (412), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 114/162 (70%), Gaps = 1/162 (0%)
Query: 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEE 139
T+T ++ NGE +TM+TAYDY +A +D +GI+ LVGDS MV G++ TL +T+E+
Sbjct: 4 TVTTFQKAKNNGEKLTMLTAYDYSTAKLIDESGINGILVGDSLGMVCLGYEDTLSVTMED 63
Query: 140 MLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRIT 199
M+ H RAV+RG K L+VGD+PF +Y+SS AV A R++KEGG A+KLEGG+ + I
Sbjct: 64 MIHHTRAVSRGVKNTLVVGDMPFMSYQSSVYDAVVNAGRLIKEGGATAVKLEGGA-TVIE 122
Query: 200 AARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKV 241
+ IV A I VM H+GLTPQ+I+V GGF+ QGK+ A K+
Sbjct: 123 QIKAIVNAQIPVMAHIGLTPQSINVFGGFKVQGKDEEKAQKL 164
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Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is tranferred onto alpha-ketoisovalerate to form ketopantoate. Clostridium novyi (strain NT) (taxid: 386415) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 243 | ||||||
| 297821010 | 353 | hypothetical protein ARALYDRAFT_486638 [ | 0.814 | 0.560 | 0.874 | 3e-97 | |
| 15233139 | 354 | Phosphoenolpyruvate carboxylase family p | 0.806 | 0.553 | 0.878 | 8e-97 | |
| 224130402 | 360 | ketopantoate hydroxymethyltransferase [P | 0.769 | 0.519 | 0.898 | 1e-96 | |
| 15225928 | 347 | ketopantoate hydroxymethyltransferase 1 | 0.802 | 0.561 | 0.857 | 7e-96 | |
| 225454302 | 363 | PREDICTED: 3-methyl-2-oxobutanoate hydro | 0.769 | 0.515 | 0.893 | 3e-95 | |
| 255541718 | 362 | 3-methyl-2-oxobutanoate hydroxymethyltra | 0.769 | 0.516 | 0.882 | 3e-93 | |
| 356522560 | 358 | PREDICTED: 3-methyl-2-oxobutanoate hydro | 0.835 | 0.567 | 0.800 | 2e-92 | |
| 449443772 | 347 | PREDICTED: 3-methyl-2-oxobutanoate hydro | 0.823 | 0.576 | 0.837 | 5e-92 | |
| 357504415 | 351 | 3-methyl-2-oxobutanoate hydroxymethyltra | 0.765 | 0.529 | 0.851 | 3e-88 | |
| 297828337 | 346 | KPHMT1/PANB1 [Arabidopsis lyrata subsp. | 0.794 | 0.557 | 0.813 | 4e-87 |
| >gi|297821010|ref|XP_002878388.1| hypothetical protein ARALYDRAFT_486638 [Arabidopsis lyrata subsp. lyrata] gi|297324226|gb|EFH54647.1| hypothetical protein ARALYDRAFT_486638 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 360 bits (924), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 174/199 (87%), Positives = 187/199 (93%), Gaps = 1/199 (0%)
Query: 43 SFSRINRARPLLVRCMSNIPENSVYGGPKPQNPNQRVTLTHLRQKHKNGEPITMVTAYDY 102
S SR +RA VR MSN+PEN+VYGGPK QNPNQRVTLT LRQKH+ GEPITMVTAYDY
Sbjct: 8 SCSRASRAI-TTVRFMSNVPENTVYGGPKSQNPNQRVTLTQLRQKHRKGEPITMVTAYDY 66
Query: 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF 162
PSAVH+D+AGID+CLVGDSAAMVVHG+DTTLPI+L+EMLVHCRAVARGAKRPLLVGDLPF
Sbjct: 67 PSAVHIDTAGIDVCLVGDSAAMVVHGYDTTLPISLDEMLVHCRAVARGAKRPLLVGDLPF 126
Query: 163 GTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAI 222
GTYESSTNQAVDTAVR+LKEGGMDAIKLEGGSPSRITAA+ IVEAGIAVMGHVGLTPQAI
Sbjct: 127 GTYESSTNQAVDTAVRVLKEGGMDAIKLEGGSPSRITAAKSIVEAGIAVMGHVGLTPQAI 186
Query: 223 SVLGGFRPQGKNVTSAVKV 241
SVLGGFRPQGKN+ SAVKV
Sbjct: 187 SVLGGFRPQGKNIASAVKV 205
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15233139|ref|NP_191712.1| Phosphoenolpyruvate carboxylase family protein [Arabidopsis thaliana] gi|42572757|ref|NP_974474.1| Phosphoenolpyruvate carboxylase family protein [Arabidopsis thaliana] gi|6850844|emb|CAB71083.1| 3-methyl-2-oxobutanoate hydroxy-methyl-transferase-like protein [Arabidopsis thaliana] gi|21593121|gb|AAM65070.1| 3-methyl-2-oxobutanoate hydroxy-methyl-transferase-like protein [Arabidopsis thaliana] gi|94442441|gb|ABF19008.1| At3g61530 [Arabidopsis thaliana] gi|332646697|gb|AEE80218.1| Phosphoenolpyruvate carboxylase family protein [Arabidopsis thaliana] gi|332646698|gb|AEE80219.1| Phosphoenolpyruvate carboxylase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 358 bits (920), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 173/197 (87%), Positives = 186/197 (94%), Gaps = 1/197 (0%)
Query: 45 SRINRARPLLVRCMSNIPENSVYGGPKPQNPNQRVTLTHLRQKHKNGEPITMVTAYDYPS 104
SR +RA VR MSN+PE++VYGGPKPQN NQRVTLT LRQKH+ GEPITMVTAYDYPS
Sbjct: 11 SRASRAI-TTVRFMSNVPEDTVYGGPKPQNSNQRVTLTQLRQKHRKGEPITMVTAYDYPS 69
Query: 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGT 164
AVH+D+AGID+CLVGDSAAMVVHG+DTTLPI+LEEMLVHCRAVARGAKRPLLVGDLPFGT
Sbjct: 70 AVHIDTAGIDVCLVGDSAAMVVHGYDTTLPISLEEMLVHCRAVARGAKRPLLVGDLPFGT 129
Query: 165 YESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISV 224
YESSTNQAVDTAVR+LKEGGMDAIKLEGGSPSRITAA+ IVEAGIAVMGHVGLTPQAISV
Sbjct: 130 YESSTNQAVDTAVRVLKEGGMDAIKLEGGSPSRITAAKSIVEAGIAVMGHVGLTPQAISV 189
Query: 225 LGGFRPQGKNVTSAVKV 241
LGGFRPQGKN+ SAVKV
Sbjct: 190 LGGFRPQGKNIASAVKV 206
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130402|ref|XP_002320828.1| ketopantoate hydroxymethyltransferase [Populus trichocarpa] gi|222861601|gb|EEE99143.1| ketopantoate hydroxymethyltransferase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 358 bits (919), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 168/187 (89%), Positives = 183/187 (97%)
Query: 55 VRCMSNIPENSVYGGPKPQNPNQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGID 114
+R MSN+PEN+VYGGPKPQNP+QRVTLTHL+QKHK G+PIT+VTAYDYPSAVHLD+AGID
Sbjct: 23 LRFMSNVPENTVYGGPKPQNPHQRVTLTHLKQKHKKGDPITVVTAYDYPSAVHLDTAGID 82
Query: 115 ICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVD 174
+CLVGDSA+MVVHGHDTTLPI+L+EMLVHCRAVARGAKRPLLVGDLPFGTYESS+NQAVD
Sbjct: 83 VCLVGDSASMVVHGHDTTLPISLDEMLVHCRAVARGAKRPLLVGDLPFGTYESSSNQAVD 142
Query: 175 TAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKN 234
TAVRILKEGGMDAIKLEGGSPSRITAA+ IVEAGIAVMGHVGLTPQAISVLGGFRPQGKN
Sbjct: 143 TAVRILKEGGMDAIKLEGGSPSRITAAKAIVEAGIAVMGHVGLTPQAISVLGGFRPQGKN 202
Query: 235 VTSAVKV 241
+ SAVKV
Sbjct: 203 IASAVKV 209
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15225928|ref|NP_182135.1| ketopantoate hydroxymethyltransferase 1 [Arabidopsis thaliana] gi|3702336|gb|AAC62893.1| 3-methyl-2-oxobutanoate hydroxy-methyl-transferase [Arabidopsis thaliana] gi|28466955|gb|AAO44086.1| At2g46110 [Arabidopsis thaliana] gi|110735692|dbj|BAE99826.1| 3-methyl-2-oxobutanoate hydroxy-methyl-transferase [Arabidopsis thaliana] gi|330255551|gb|AEC10645.1| ketopantoate hydroxymethyltransferase 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 355 bits (912), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 169/197 (85%), Positives = 188/197 (95%), Gaps = 2/197 (1%)
Query: 45 SRINRARPLLVRCMSNIPENSVYGGPKPQNPNQRVTLTHLRQKHKNGEPITMVTAYDYPS 104
SR ++A + VR MSN+PEN+VYGGPKPQNPNQRVTLTHLRQKH+ GEPIT+VTAYDYPS
Sbjct: 10 SRFSKA--ISVRFMSNLPENTVYGGPKPQNPNQRVTLTHLRQKHRRGEPITVVTAYDYPS 67
Query: 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGT 164
AVHLD+AGID+CLVGDSA+MVVHGHDTTLPI+L+EMLVHCRAVARGAKRPLLVGDLPFGT
Sbjct: 68 AVHLDTAGIDVCLVGDSASMVVHGHDTTLPISLDEMLVHCRAVARGAKRPLLVGDLPFGT 127
Query: 165 YESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISV 224
YESS++QAVDTAVR+LKEGGMDAIKLEGGS SRITAA+ IVEAGIAV+GHVGLTPQAISV
Sbjct: 128 YESSSSQAVDTAVRVLKEGGMDAIKLEGGSASRITAAKAIVEAGIAVIGHVGLTPQAISV 187
Query: 225 LGGFRPQGKNVTSAVKV 241
LGGFRPQG+N+ SAVKV
Sbjct: 188 LGGFRPQGRNIASAVKV 204
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225454302|ref|XP_002276965.1| PREDICTED: 3-methyl-2-oxobutanoate hydroxymethyltransferase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 353 bits (907), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 167/187 (89%), Positives = 178/187 (95%)
Query: 55 VRCMSNIPENSVYGGPKPQNPNQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGID 114
++ +SN+PEN+VYGGPKPQNPNQRVTL HLRQKH+ GEP TMVTAYDYPSAVHLD AGID
Sbjct: 24 LKWLSNLPENTVYGGPKPQNPNQRVTLNHLRQKHRRGEPFTMVTAYDYPSAVHLDLAGID 83
Query: 115 ICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVD 174
ICLVGDSA+MVVHGHDTTLPI+LEEMLVHCRAVARGAKRPLLVGDLPFGTYESS+NQAVD
Sbjct: 84 ICLVGDSASMVVHGHDTTLPISLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSSNQAVD 143
Query: 175 TAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKN 234
AVRILKEG MDAIKLEGGSPSRITAA+ IVEAGIAVMGHVGLTPQAISVLGGFRPQGKN
Sbjct: 144 AAVRILKEGTMDAIKLEGGSPSRITAAKSIVEAGIAVMGHVGLTPQAISVLGGFRPQGKN 203
Query: 235 VTSAVKV 241
+ SAVKV
Sbjct: 204 IASAVKV 210
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255541718|ref|XP_002511923.1| 3-methyl-2-oxobutanoate hydroxymethyltransferase, putative [Ricinus communis] gi|223549103|gb|EEF50592.1| 3-methyl-2-oxobutanoate hydroxymethyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 347 bits (889), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 165/187 (88%), Positives = 178/187 (95%)
Query: 55 VRCMSNIPENSVYGGPKPQNPNQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGID 114
+R MSNIPEN+VYGGPKPQ NQRVTL+HL+QKHK GEPIT+VTAYDY SAVHLD+AGID
Sbjct: 23 LRYMSNIPENTVYGGPKPQCSNQRVTLSHLKQKHKKGEPITVVTAYDYSSAVHLDTAGID 82
Query: 115 ICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVD 174
ICLVGDSAAMVVHGHDTTLPI+L+EMLVHCR+VARGA RPLLVGDLPFGTYESST QAVD
Sbjct: 83 ICLVGDSAAMVVHGHDTTLPISLDEMLVHCRSVARGANRPLLVGDLPFGTYESSTMQAVD 142
Query: 175 TAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKN 234
TAVR+LKEGGMDAIKLEGGS SRITAA+ IVEAGIAVMGHVGLTPQAISVLGGFRPQGKN
Sbjct: 143 TAVRVLKEGGMDAIKLEGGSSSRITAAKAIVEAGIAVMGHVGLTPQAISVLGGFRPQGKN 202
Query: 235 VTSAVKV 241
++SAVKV
Sbjct: 203 ISSAVKV 209
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356522560|ref|XP_003529914.1| PREDICTED: 3-methyl-2-oxobutanoate hydroxymethyltransferase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 344 bits (882), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 165/206 (80%), Positives = 182/206 (88%), Gaps = 3/206 (1%)
Query: 36 ILNNSNMSFSRINRARPLLVRCMSNIPENSVYGGPKPQNPNQRVTLTHLRQKHKNGEPIT 95
+L N +S + R R +RCMSN+PEN+VY GP Q+ +RVTL+ LRQKH+ +PIT
Sbjct: 4 LLRARNPCYSLMRRIR---IRCMSNVPENTVYSGPTSQSSTKRVTLSQLRQKHRASQPIT 60
Query: 96 MVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPL 155
MVTAYDYP+AVHLD+AG+DICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK PL
Sbjct: 61 MVTAYDYPAAVHLDTAGVDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKTPL 120
Query: 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHV 215
LVGDL FGTYESS+NQAVDTAVR+LKEGGMDAIKLEGGSPSRI AA+ IVEAGIAVMGHV
Sbjct: 121 LVGDLAFGTYESSSNQAVDTAVRMLKEGGMDAIKLEGGSPSRIVAAKAIVEAGIAVMGHV 180
Query: 216 GLTPQAISVLGGFRPQGKNVTSAVKV 241
GLTPQAISVLGGFRPQGKNV SAVKV
Sbjct: 181 GLTPQAISVLGGFRPQGKNVASAVKV 206
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443772|ref|XP_004139651.1| PREDICTED: 3-methyl-2-oxobutanoate hydroxymethyltransferase-like [Cucumis sativus] gi|449475405|ref|XP_004154444.1| PREDICTED: 3-methyl-2-oxobutanoate hydroxymethyltransferase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 343 bits (879), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 170/203 (83%), Positives = 184/203 (90%), Gaps = 3/203 (1%)
Query: 41 NMSFSRINRARPLL--VRCMSNIPENSVYGGPKPQNPNQRVTLTHLRQKHKNGEPITMVT 98
M+ SR R + LL +R MSN+PEN+VYGGP Q PNQRVTLT+LRQK+K GEPITMVT
Sbjct: 8 TMAVSR-TRTQSLLKTLRYMSNVPENTVYGGPTSQTPNQRVTLTNLRQKYKKGEPITMVT 66
Query: 99 AYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158
AYDYPS VHLD AGIDI LVGDSAAMVVHGHDTTLPITL+E+LVHCRAVARGA+RPLL+G
Sbjct: 67 AYDYPSGVHLDMAGIDIALVGDSAAMVVHGHDTTLPITLDEILVHCRAVARGARRPLLIG 126
Query: 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLT 218
DLPFGTYESS+ QA+DTAVRILKEGGMDAIKLEGGS SRITAAR IVEAGIAVMGHVGLT
Sbjct: 127 DLPFGTYESSSAQAIDTAVRILKEGGMDAIKLEGGSHSRITAARAIVEAGIAVMGHVGLT 186
Query: 219 PQAISVLGGFRPQGKNVTSAVKV 241
PQAISVLGGFRPQGKN+TSAVKV
Sbjct: 187 PQAISVLGGFRPQGKNITSAVKV 209
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357504415|ref|XP_003622496.1| 3-methyl-2-oxobutanoate hydroxymethyltransferase [Medicago truncatula] gi|355497511|gb|AES78714.1| 3-methyl-2-oxobutanoate hydroxymethyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 330 bits (846), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 160/188 (85%), Positives = 172/188 (91%), Gaps = 2/188 (1%)
Query: 54 LVRCMSNIPENSVYGGPKPQNPNQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGI 113
L+R MSN+PEN+VY GP PQN +RVTL+ L QKHKN +PITMVTAYDYPSAVHLD A I
Sbjct: 21 LLRNMSNLPENTVYTGPTPQN--KRVTLSQLHQKHKNSQPITMVTAYDYPSAVHLDMAAI 78
Query: 114 DICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAV 173
DICLVGDSA+MVVHGHDTTLPITL+EMLVHCRAVARGAK PLLVGDLPFGTYE S+NQAV
Sbjct: 79 DICLVGDSASMVVHGHDTTLPITLDEMLVHCRAVARGAKTPLLVGDLPFGTYECSSNQAV 138
Query: 174 DTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGK 233
DTAVRILKEG MDAIKLEGGSPSRI AA+ IVEAGIAV+GHVGLTPQAISVLGGFRPQG+
Sbjct: 139 DTAVRILKEGQMDAIKLEGGSPSRIVAAKAIVEAGIAVIGHVGLTPQAISVLGGFRPQGR 198
Query: 234 NVTSAVKV 241
NV SAVKV
Sbjct: 199 NVASAVKV 206
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297828337|ref|XP_002882051.1| KPHMT1/PANB1 [Arabidopsis lyrata subsp. lyrata] gi|297327890|gb|EFH58310.1| KPHMT1/PANB1 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 326 bits (836), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 161/198 (81%), Positives = 179/198 (90%), Gaps = 5/198 (2%)
Query: 45 SRINRARPLLVRCMSNIPENSVYGGPKPQNPNQRVTLTHLRQKHKNGEPITMVTAYDYPS 104
SR ++A + VR MSN+PEN+VYGGPKPQNPNQRVTLTHLRQKH+ GEPIT+VTAYDYPS
Sbjct: 10 SRFSKA--ISVRFMSNLPENTVYGGPKPQNPNQRVTLTHLRQKHRKGEPITVVTAYDYPS 67
Query: 105 AVHLDSA-GIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG 163
AVHLD+A GID+CLVGDSA+MVVHGHDTTLPI+L+EMLVHCRAVARGAKRPLLVGDLP
Sbjct: 68 AVHLDTAAGIDVCLVGDSASMVVHGHDTTLPISLDEMLVHCRAVARGAKRPLLVGDLPL- 126
Query: 164 TYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAIS 223
+S AVDT VR+LKEGGMDAIKLEGGS SRITAA+ IVEAGIAV+GHVGLTPQAIS
Sbjct: 127 -VPTSQALAVDTVVRVLKEGGMDAIKLEGGSASRITAAKAIVEAGIAVIGHVGLTPQAIS 185
Query: 224 VLGGFRPQGKNVTSAVKV 241
VLGGFRPQG+N+ SAVKV
Sbjct: 186 VLGGFRPQGRNIASAVKV 203
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 243 | ||||||
| TAIR|locus:2082847 | 354 | PANB2 [Arabidopsis thaliana (t | 0.806 | 0.553 | 0.878 | 2.8e-89 | |
| TAIR|locus:2062969 | 347 | KPHMT1 "ketopantoate hydroxyme | 0.802 | 0.561 | 0.857 | 9.6e-89 | |
| ASPGD|ASPL0000048463 | 349 | pantoB [Emericella nidulans (t | 0.810 | 0.564 | 0.475 | 2.2e-43 | |
| DICTYBASE|DDB_G0286637 | 833 | DDB_G0286637 "3-methyl-2-oxobu | 0.679 | 0.198 | 0.481 | 6.1e-42 | |
| TIGR_CMR|CHY_2377 | 276 | CHY_2377 "3-methyl-2-oxobutano | 0.670 | 0.590 | 0.506 | 4.6e-41 | |
| UNIPROTKB|G4NB94 | 373 | MGG_00599 "3-methyl-2-oxobutan | 0.711 | 0.463 | 0.52 | 2.6e-40 | |
| TIGR_CMR|DET_0803 | 282 | DET_0803 "3-methyl-2-oxobutano | 0.662 | 0.570 | 0.487 | 1.5e-37 | |
| UNIPROTKB|P0A5Q8 | 281 | panB "3-methyl-2-oxobutanoate | 0.695 | 0.601 | 0.459 | 1.7e-36 | |
| CGD|CAL0005148 | 309 | orf19.6057 [Candida albicans ( | 0.679 | 0.533 | 0.448 | 1.5e-35 | |
| TIGR_CMR|BA_1562 | 279 | BA_1562 "3-methyl-2-oxobutanoa | 0.662 | 0.577 | 0.469 | 6.5e-35 |
| TAIR|locus:2082847 PANB2 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
Identities = 173/197 (87%), Positives = 186/197 (94%)
Query: 45 SRINRARPLLVRCMSNIPENSVYGGPKPQNPNQRVTLTHLRQKHKNGEPITMVTAYDYPS 104
SR +RA VR MSN+PE++VYGGPKPQN NQRVTLT LRQKH+ GEPITMVTAYDYPS
Sbjct: 11 SRASRAITT-VRFMSNVPEDTVYGGPKPQNSNQRVTLTQLRQKHRKGEPITMVTAYDYPS 69
Query: 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGT 164
AVH+D+AGID+CLVGDSAAMVVHG+DTTLPI+LEEMLVHCRAVARGAKRPLLVGDLPFGT
Sbjct: 70 AVHIDTAGIDVCLVGDSAAMVVHGYDTTLPISLEEMLVHCRAVARGAKRPLLVGDLPFGT 129
Query: 165 YESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISV 224
YESSTNQAVDTAVR+LKEGGMDAIKLEGGSPSRITAA+ IVEAGIAVMGHVGLTPQAISV
Sbjct: 130 YESSTNQAVDTAVRVLKEGGMDAIKLEGGSPSRITAAKSIVEAGIAVMGHVGLTPQAISV 189
Query: 225 LGGFRPQGKNVTSAVKV 241
LGGFRPQGKN+ SAVKV
Sbjct: 190 LGGFRPQGKNIASAVKV 206
|
|
| TAIR|locus:2062969 KPHMT1 "ketopantoate hydroxymethyltransferase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
Identities = 169/197 (85%), Positives = 188/197 (95%)
Query: 45 SRINRARPLLVRCMSNIPENSVYGGPKPQNPNQRVTLTHLRQKHKNGEPITMVTAYDYPS 104
SR ++A + VR MSN+PEN+VYGGPKPQNPNQRVTLTHLRQKH+ GEPIT+VTAYDYPS
Sbjct: 10 SRFSKA--ISVRFMSNLPENTVYGGPKPQNPNQRVTLTHLRQKHRRGEPITVVTAYDYPS 67
Query: 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGT 164
AVHLD+AGID+CLVGDSA+MVVHGHDTTLPI+L+EMLVHCRAVARGAKRPLLVGDLPFGT
Sbjct: 68 AVHLDTAGIDVCLVGDSASMVVHGHDTTLPISLDEMLVHCRAVARGAKRPLLVGDLPFGT 127
Query: 165 YESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISV 224
YESS++QAVDTAVR+LKEGGMDAIKLEGGS SRITAA+ IVEAGIAV+GHVGLTPQAISV
Sbjct: 128 YESSSSQAVDTAVRVLKEGGMDAIKLEGGSASRITAAKAIVEAGIAVIGHVGLTPQAISV 187
Query: 225 LGGFRPQGKNVTSAVKV 241
LGGFRPQG+N+ SAVKV
Sbjct: 188 LGGFRPQGRNIASAVKV 204
|
|
| ASPGD|ASPL0000048463 pantoB [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 98/206 (47%), Positives = 137/206 (66%)
Query: 36 ILNNSNMSFSRINRARPLLVRCMSNIPENSVYGGPKPQNPNQRVTLTHLRQKHKNGEPIT 95
+L+++N++ +R+ P +R S+ P G NP ++VT+ LR +K GEPIT
Sbjct: 30 VLHSTNVA-TRV--PSPCAIRHSSHSPL-----GAAQANPRKKVTMQTLRNLYKKGEPIT 81
Query: 96 MVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPL 155
M+TA+D+PSA D+AG+D+ LVGDS AMV G T +TL++MLVHCR+VAR A+
Sbjct: 82 MLTAHDFPSAHVADAAGMDMILVGDSLAMVALGMQDTSEVTLDDMLVHCRSVARAAQSAF 141
Query: 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHV 215
V DLP G+YE S QA+ +A+RI+KEG + +KLEGG A + I AGI V+GH+
Sbjct: 142 TVSDLPMGSYEVSPEQALQSAIRIVKEGRVQGVKLEGGE-EMAPAIKRITTAGIPVVGHI 200
Query: 216 GLTPQAISVLGGFRPQGKNVTSAVKV 241
GLTPQ + LGGFR QGK+ T A+K+
Sbjct: 201 GLTPQRQNALGGFRVQGKSTTDALKL 226
|
|
| DICTYBASE|DDB_G0286637 DDB_G0286637 "3-methyl-2-oxobutanoate hydroxymethyltransferase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 438 (159.2 bits), Expect = 6.1e-42, Sum P(2) = 6.1e-42
Identities = 80/166 (48%), Positives = 121/166 (72%)
Query: 76 NQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPI 135
N++ T+ + +K+K+G PI+MVTAYD+ S+ +D +G+D+ LVGDS MV++G T +
Sbjct: 89 NKKKTVLDILKKYKDGIPISMVTAYDFTSSKIVDKSGMDMILVGDSLGMVMNGESGTTSV 148
Query: 136 TLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP 195
T+E+M+ HC++V +G+KR +VGD+PFG+YE+ST AV A+R++KEGG+DAIKLEGG
Sbjct: 149 TMEQMIYHCKSVMKGSKRSFVVGDMPFGSYETSTKDAVSNAIRLIKEGGVDAIKLEGGK- 207
Query: 196 SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKV 241
+ + I + GI V+GH+GLTPQ + LGGF+ QGK A+ +
Sbjct: 208 KQFEKIKAICDTGILVVGHIGLTPQTSTSLGGFKLQGKTEQEALSL 253
|
|
| TIGR_CMR|CHY_2377 CHY_2377 "3-methyl-2-oxobutanoate hydroxymethyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
Identities = 83/164 (50%), Positives = 121/164 (73%)
Query: 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITL 137
RVT++ L++ + G+ I M+TAYDYPSA+ + AG ++ LVGDS MVV G+D+T+P+T+
Sbjct: 3 RVTVSSLKEMKEAGQKIAMITAYDYPSALFAEEAGAEVLLVGDSLGMVVLGYDSTVPVTM 62
Query: 138 EEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSR 197
EEML H +AV RG+KR ++V D+PF +Y++S A+ A R LKEGG A+KLEGG
Sbjct: 63 EEMLHHVKAVVRGSKRSMVVADMPFMSYQASYTDALYNAGRFLKEGGAQAVKLEGGGEIA 122
Query: 198 ITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKV 241
A+ +V AGI VMGH+GLTPQ+++ LGG++ QGK++ +A K+
Sbjct: 123 ELVAK-LVTAGIPVMGHIGLTPQSVNALGGYKVQGKDLKTAQKL 165
|
|
| UNIPROTKB|G4NB94 MGG_00599 "3-methyl-2-oxobutanoate hydroxymethyltransferase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 91/175 (52%), Positives = 116/175 (66%)
Query: 64 NSVYGGPKPQNPNQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAA 123
+S G P N ++VTL LR +K GEPIT++TA+D+PSA D+AG+DI LVGDS A
Sbjct: 75 HSPMGAPIA-NQRKKVTLGTLRSLYKKGEPITVMTAHDFPSAHVADAAGMDIILVGDSLA 133
Query: 124 MVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183
MV G + T + L+EML+HCR+VAR K +GDLP G+YE S QA+ TA+R +KEG
Sbjct: 134 MVALGMEDTSEVVLDEMLLHCRSVARATKSAFTIGDLPMGSYEVSPEQALQTAIRFVKEG 193
Query: 184 GMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSA 238
+ IK+EGG T R I AGI V+GH+GLTPQ LGGFR QGK +A
Sbjct: 194 RVQGIKIEGGREMAPTI-RKITGAGIPVLGHIGLTPQRQHSLGGFRVQGKTSAAA 247
|
|
| TIGR_CMR|DET_0803 DET_0803 "3-methyl-2-oxobutanoate hydroxymethyltransferase" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 79/162 (48%), Positives = 114/162 (70%)
Query: 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITL 137
R T++ L++ +N + I M+TAYDYP+A LD AGI LVGDS MVV G+D+T+ +T+
Sbjct: 2 RTTISQLKEMKQNKQKIAMLTAYDYPTAQILDKAGIPAILVGDSLGMVVLGYDSTVSVTM 61
Query: 138 EEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSR 197
E+ML H +AV RG+++ +++ D+PF TY S QA+ A R ++EGG A+KLEGG
Sbjct: 62 EDMLHHLKAVVRGSQKAMVIADMPFMTYHLSPEQALLNAGRFMQEGGAQAVKLEGGVNVA 121
Query: 198 ITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAV 239
R IV+ GI VMGH+GLTPQ+++ L GF+ QGK +T+A+
Sbjct: 122 DKVKR-IVDCGIPVMGHIGLTPQSVNQLSGFKVQGKTLTAAL 162
|
|
| UNIPROTKB|P0A5Q8 panB "3-methyl-2-oxobutanoate hydroxymethyltransferase" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 80/174 (45%), Positives = 111/174 (63%)
Query: 63 ENSVYGGPKP--QNPNQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGD 120
E ++YG P P ++ HL++ +G M+TAYDY +A D AGI + LVGD
Sbjct: 3 EQTIYGANTPGGSGPRTKIRTHHLQRWKADGHKWAMLTAYDYSTARIFDEAGIPVLLVGD 62
Query: 121 SAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180
SAA VV+G+DTT+PI+++E++ R V RGA L+V DLPFG+YE+ A+ A R L
Sbjct: 63 SAANVVYGYDTTVPISIDELIPLVRGVVRGAPHALVVADLPFGSYEAGPTAALAAATRFL 122
Query: 181 KEGGMDAIKLEGGSPSRITAARG-IVEAGIAVMGHVGLTPQAISVLGGFRPQGK 233
K+GG A+KLEGG R+ + AGI VM H+G TPQ+++ LGGFR QG+
Sbjct: 123 KDGGAHAVKLEGGE--RVAEQIACLTAAGIPVMAHIGFTPQSVNTLGGFRVQGR 174
|
|
| CGD|CAL0005148 orf19.6057 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 74/165 (44%), Positives = 113/165 (68%)
Query: 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITL 137
R T+ + + +K GE I+MVT++D+ ++ L+ A +DI L+GDS A G+D T +TL
Sbjct: 28 RKTIADIHELYKTGESISMVTSHDFITSQILEQAKVDINLIGDSLANTTLGYDDTNELTL 87
Query: 138 EEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSR 197
+E L H ++V RG LLV D+PFG++ESS QA TAV+++++G + A+K+EGG+
Sbjct: 88 DEFLYHVKSVQRGNSHSLLVADMPFGSFESSIEQATTTAVKLIQKGKIQAVKIEGGNEEI 147
Query: 198 ITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVF 242
I + IV GI VMGHVGLTPQ + LGG++ QG++V +V++F
Sbjct: 148 IPTIKKIVSVGIPVMGHVGLTPQKHNSLGGYKLQGRSVDDSVRIF 192
|
|
| TIGR_CMR|BA_1562 BA_1562 "3-methyl-2-oxobutanoate hydroxymethyltransferase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 76/162 (46%), Positives = 108/162 (66%)
Query: 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEE 139
T T + + GEPITM+TAYDYPSA + A +D+ LVGDS MVV G+D+T+P+T+E+
Sbjct: 3 TKTDFLKMKEQGEPITMLTAYDYPSAKLAEEAEVDMILVGDSLGMVVLGYDSTVPVTVED 62
Query: 140 MLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRIT 199
M+ H +AV RGAK +V D+PF +Y S + A RI++E G A+K+EG I+
Sbjct: 63 MIHHTKAVRRGAKETFIVTDMPFMSYHVSLQDTMVNARRIVQESGAHALKVEGAGEV-IS 121
Query: 200 AARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKV 241
+ AGI V+ H+GLTPQ++ VLGG++ QGK+ SA K+
Sbjct: 122 TIHYLTNAGIPVVAHLGLTPQSVGVLGGYKVQGKDAESAKKL 163
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B8HWP9 | PANB_CYAP4 | 2, ., 1, ., 2, ., 1, 1 | 0.5060 | 0.6748 | 0.6283 | yes | no |
| Q5YZ95 | PANB_NOCFA | 2, ., 1, ., 2, ., 1, 1 | 0.5028 | 0.6995 | 0.6007 | yes | no |
| Q7NMK3 | PANB_GLOVI | 2, ., 1, ., 2, ., 1, 1 | 0.5060 | 0.6748 | 0.6307 | yes | no |
| Q2RM79 | PANB_MOOTA | 2, ., 1, ., 2, ., 1, 1 | 0.5243 | 0.6707 | 0.6059 | yes | no |
| C0QFH9 | PANB_DESAH | 2, ., 1, ., 2, ., 1, 1 | 0.5029 | 0.6707 | 0.6197 | yes | no |
| Q8YWS8 | PANB_NOSS1 | 2, ., 1, ., 2, ., 1, 1 | 0.5243 | 0.6666 | 0.6303 | yes | no |
| Q3M672 | PANB_ANAVT | 2, ., 1, ., 2, ., 1, 1 | 0.5304 | 0.6666 | 0.6303 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.2 | LOW CONFIDENCE prediction! |
| 4th Layer | 2.1.2.11 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 243 | |||
| PLN02424 | 332 | PLN02424, PLN02424, ketopantoate hydroxymethyltran | 1e-137 | |
| cd06557 | 254 | cd06557, KPHMT-like, Ketopantoate hydroxymethyltra | 2e-89 | |
| pfam02548 | 261 | pfam02548, Pantoate_transf, Ketopantoate hydroxyme | 5e-87 | |
| PRK00311 | 264 | PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymet | 1e-85 | |
| COG0413 | 268 | COG0413, PanB, Ketopantoate hydroxymethyltransfera | 2e-74 | |
| TIGR00222 | 263 | TIGR00222, panB, 3-methyl-2-oxobutanoate hydroxyme | 3e-53 | |
| cd06556 | 240 | cd06556, ICL_KPHMT, Members of the ICL/PEPM_KPHMT | 5e-31 | |
| COG2513 | 289 | COG2513, PrpB, PEP phosphonomutase and related enz | 1e-04 | |
| pfam13714 | 238 | pfam13714, PEP_mutase, Phosphoenolpyruvate phospho | 6e-04 |
| >gnl|CDD|215233 PLN02424, PLN02424, ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Score = 388 bits (998), Expect = e-137
Identities = 158/184 (85%), Positives = 175/184 (95%)
Query: 58 MSNIPENSVYGGPKPQNPNQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL 117
MSN+PE++VYGGPKPQNP QRVTL LRQK++ GEPITMVTAYDYPSAVH+DSAGID+CL
Sbjct: 1 MSNLPEDTVYGGPKPQNPAQRVTLRTLRQKYRRGEPITMVTAYDYPSAVHVDSAGIDVCL 60
Query: 118 VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAV 177
VGDSAAMVVHGHDTTLPITL+EMLVHCRAVARGA RPLLVGDLPFG+YESST+QAV++AV
Sbjct: 61 VGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAV 120
Query: 178 RILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTS 237
R+LKEGGMDA+KLEGGSPSR+TAA+ IVEAGIAVMGHVGLTPQAISVLGGFRPQG+ S
Sbjct: 121 RMLKEGGMDAVKLEGGSPSRVTAAKAIVEAGIAVMGHVGLTPQAISVLGGFRPQGRTAES 180
Query: 238 AVKV 241
AVKV
Sbjct: 181 AVKV 184
|
Length = 332 |
| >gnl|CDD|119342 cd06557, KPHMT-like, Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Score = 264 bits (677), Expect = 2e-89
Identities = 85/161 (52%), Positives = 117/161 (72%), Gaps = 1/161 (0%)
Query: 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEM 140
+ L++ K GE I M+TAYDYP+A D AG+D+ LVGDS MVV G+D+TLP+TL+EM
Sbjct: 1 IPDLQKMKKAGEKIVMLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEM 60
Query: 141 LVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITA 200
+ H RAV RGA R L+V D+PFG+Y++S QA+ A R++KE G DA+KLEGG+
Sbjct: 61 IYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNAARLMKEAGADAVKLEGGA-EVAET 119
Query: 201 ARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKV 241
R +V+AGI VMGH+GLTPQ+++ LGG++ QGK A ++
Sbjct: 120 IRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERL 160
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. Length = 254 |
| >gnl|CDD|217097 pfam02548, Pantoate_transf, Ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Score = 258 bits (661), Expect = 5e-87
Identities = 86/164 (52%), Positives = 118/164 (71%), Gaps = 1/164 (0%)
Query: 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITL 137
+VT+ LR+ GE I M+TAYDYP+A D AG+D+ LVGDS MVV GH++TLP+TL
Sbjct: 2 KVTIPDLRKMKGEGEKIVMLTAYDYPTARLADEAGVDVILVGDSLGMVVLGHESTLPVTL 61
Query: 138 EEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSR 197
EEM+ H +AVARGA R +V D+PFG+YE+S QA+ A R++KE G DA+KLEGG+
Sbjct: 62 EEMIYHTKAVARGAPRAFVVADMPFGSYEASPEQALRNAARLMKEAGADAVKLEGGAEMA 121
Query: 198 ITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKV 241
T +V+ GI VMGH+GLTPQ+++ LGG++ QG+ A ++
Sbjct: 122 DTIKA-LVDRGIPVMGHIGLTPQSVNQLGGYKVQGRTEEEAEQL 164
|
Ketopantoate hydroxymethyltransferase (EC:2.1.2.11) is the first enzyme in the pantothenate biosynthesis pathway. Length = 261 |
| >gnl|CDD|234723 PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 254 bits (652), Expect = 1e-85
Identities = 86/161 (53%), Positives = 120/161 (74%), Gaps = 1/161 (0%)
Query: 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITL 137
RVT++ L++ + GE I M+TAYDYP A D AG+D+ LVGDS MVV G+D+TLP+TL
Sbjct: 1 RVTISDLQKMKQEGEKIVMLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTL 60
Query: 138 EEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSR 197
++M+ H +AVARGA R L+V D+PFG+Y++S QA+ A R++KE G A+KLEGG
Sbjct: 61 DDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALRNAGRLMKEAGAHAVKLEGGEEVA 120
Query: 198 ITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSA 238
T R +VE GI VMGH+GLTPQ+++VLGG++ QG++ +A
Sbjct: 121 ETIKR-LVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAA 160
|
Length = 264 |
| >gnl|CDD|223490 COG0413, PanB, Ketopantoate hydroxymethyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 226 bits (578), Expect = 2e-74
Identities = 85/165 (51%), Positives = 113/165 (68%), Gaps = 1/165 (0%)
Query: 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITL 137
++T L + + GE I M+TAYDYP A D AG+D+ LVGDS MVV G+D+TLP+TL
Sbjct: 1 KITTRTLIKMKQEGEKIVMLTAYDYPFAKLFDQAGVDVLLVGDSLGMVVLGYDSTLPVTL 60
Query: 138 EEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSR 197
E+M+ H +AV RGA +V DLPFG+YE S QA+ A R++KE G DA+KLEGG
Sbjct: 61 EDMIYHTKAVRRGAPNAFVVADLPFGSYEVSPEQALKNAARLMKEAGADAVKLEGGEEMA 120
Query: 198 ITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVF 242
T R + E GI VMGH+GLTPQ+++ LGG++ QG+ SA K+
Sbjct: 121 ETIKR-LTERGIPVMGHIGLTPQSVNWLGGYKVQGRTEESAEKLL 164
|
Length = 268 |
| >gnl|CDD|232882 TIGR00222, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 3e-53
Identities = 77/163 (47%), Positives = 108/163 (66%), Gaps = 3/163 (1%)
Query: 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLE 138
TL+ L QK K E I +TAYDY A AG+D+ LVGDS MVV GHD+TLP+T+
Sbjct: 3 TTLSLL-QKKKQEEKIVAITAYDYSFAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVA 61
Query: 139 EMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRI 198
+M+ H AV RGA L+V DLPF +Y + QA+ A R+++E G +A+KLEGG
Sbjct: 62 DMIYHTAAVKRGAPNCLIVTDLPFMSYATP-EQALKNAARVMQETGANAVKLEGGEWLVE 120
Query: 199 TAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKV 241
T + E G+ V+GH+GLTPQ++++LGG++ QGK+ +A K+
Sbjct: 121 TVQM-LTERGVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKL 162
|
Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A]. Length = 263 |
| >gnl|CDD|119341 cd06556, ICL_KPHMT, Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 5e-31
Identities = 57/155 (36%), Positives = 82/155 (52%), Gaps = 7/155 (4%)
Query: 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEM 140
L L++ + E +TAYDY A AG+++ LVGDS M V G+D TLP + ++
Sbjct: 1 LWLLQKYKQEKERFATLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDV 60
Query: 141 LVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP--SRI 198
H RAV RGA L+V DLPFG Y + T A + A ++ G +K+EGG +
Sbjct: 61 PYHVRAVRRGAPLALIVADLPFGAYGAPT-AAFELAKTFMR-AGAAGVKIEGGEWHIETL 118
Query: 199 TAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGK 233
A + V+ H GLTPQ+++ GG Q +
Sbjct: 119 QMLT---AAAVPVIAHTGLTPQSVNTSGGDEGQYR 150
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). Length = 240 |
| >gnl|CDD|225311 COG2513, PrpB, PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 6/109 (5%)
Query: 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVH 143
R H +G+P+ + A+D SA+ + AG + + G TL+E+L
Sbjct: 10 FRALHASGDPLVLPGAWDAGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLAD 69
Query: 144 CRAVARGAKRPLLV-GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191
R + P+LV D FG T VR L++ G I +E
Sbjct: 70 ARRITDAVDLPVLVDIDTGFG----EALNVART-VRELEQAGAAGIHIE 113
|
Length = 289 |
| >gnl|CDD|222337 pfam13714, PEP_mutase, Phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 6e-04
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGH-DTTLPITLEEMLV 142
R H+ GEP+ + +D SA ++AG +A G+ D L + L+E+L
Sbjct: 1 FRALHRPGEPLVLPNVWDAGSARIAEAAGFKALATSSAAVAASLGYPDGEL-LPLDELLA 59
Query: 143 HCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183
R +AR P+ V DL G Y S +T R+++ G
Sbjct: 60 AVRRIARAVDLPVSV-DLESG-YGDSPENVAETVRRLIEAG 98
|
This domain includes the enzyme Phosphoenolpyruvate phosphomutase (EC:5.4.2.9). The PEP mutase from Streptomyces viridochromogenes has been characterized as catalyzing the formation of a carbon-phosphorus bond by converting phosphoenolpyruvate (PEP) to phosphonopyruvate (P-Pyr). This enzyme has a TIM barrel fold. Length = 238 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 243 | |||
| PF02548 | 261 | Pantoate_transf: Ketopantoate hydroxymethyltransfe | 100.0 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 100.0 | |
| COG0413 | 268 | PanB Ketopantoate hydroxymethyltransferase [Coenzy | 100.0 | |
| KOG2949 | 306 | consensus Ketopantoate hydroxymethyltransferase [C | 100.0 | |
| TIGR00222 | 263 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 100.0 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 100.0 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 100.0 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 100.0 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 99.9 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 99.74 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 99.73 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 99.73 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 99.71 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 99.69 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 99.65 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 99.65 | |
| PRK15063 | 428 | isocitrate lyase; Provisional | 99.36 | |
| TIGR01346 | 527 | isocit_lyase isocitrate lyase. Isocitrate lyase an | 98.06 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 97.85 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 97.4 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 97.4 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 97.37 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 97.27 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 97.23 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 97.11 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 97.06 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 97.0 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 96.97 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 96.97 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 96.9 | |
| KOG1260 | 492 | consensus Isocitrate lyase [Energy production and | 96.89 | |
| COG2224 | 433 | AceA Isocitrate lyase [Energy production and conve | 96.87 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 96.66 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 96.63 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 96.29 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 96.23 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 96.06 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 96.03 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 96.01 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 95.88 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 95.87 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 95.81 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 95.81 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 95.73 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 95.64 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 95.59 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 95.58 | |
| PRK15063 | 428 | isocitrate lyase; Provisional | 95.47 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 95.43 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 95.4 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 95.21 | |
| PLN02892 | 570 | isocitrate lyase | 95.19 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 95.08 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 95.01 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 94.95 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 94.95 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 94.91 | |
| TIGR00222 | 263 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 94.91 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 94.71 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 94.68 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 94.64 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 94.53 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 94.51 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 94.51 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 94.44 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 94.28 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 94.27 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 94.18 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 94.15 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 94.14 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 94.0 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 93.91 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 93.81 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 93.81 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 93.69 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 93.57 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 93.46 | |
| cd00956 | 211 | Transaldolase_FSA Transaldolase-like fructose-6-ph | 93.43 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 93.38 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 93.35 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 93.3 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 93.23 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 93.05 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 93.0 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 92.89 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 92.87 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 92.77 | |
| COG0826 | 347 | Collagenase and related proteases [Posttranslation | 92.72 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 92.72 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 92.59 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 92.56 | |
| PRK09875 | 292 | putative hydrolase; Provisional | 92.54 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 92.53 | |
| PRK12656 | 222 | fructose-6-phosphate aldolase; Reviewed | 92.46 | |
| TIGR00612 | 346 | ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho | 92.42 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 92.4 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 92.39 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 92.32 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 92.27 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 92.24 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 92.24 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 92.19 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 92.15 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 92.13 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 92.04 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 91.9 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 91.82 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 91.81 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 91.77 | |
| cd00953 | 279 | KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas | 91.73 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 91.7 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 91.64 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 91.61 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 91.53 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 91.53 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 91.52 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 91.44 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 91.44 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 91.36 | |
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 91.35 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 91.28 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 91.26 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 91.23 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 91.14 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 91.08 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 91.03 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 91.02 | |
| PRK00366 | 360 | ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s | 91.0 | |
| PLN02535 | 364 | glycolate oxidase | 90.93 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 90.9 | |
| PRK10558 | 256 | alpha-dehydro-beta-deoxy-D-glucarate aldolase; Pro | 90.89 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 90.87 | |
| PRK10128 | 267 | 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional | 90.85 | |
| cd08205 | 367 | RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l | 90.77 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 90.75 | |
| PF00463 | 526 | ICL: Isocitrate lyase family; InterPro: IPR000918 | 90.61 | |
| TIGR00875 | 213 | fsa_talC_mipB fructose-6-phosphate aldolase, TalC/ | 90.51 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 90.41 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 90.34 | |
| PRK01362 | 214 | putative translaldolase; Provisional | 90.34 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 90.26 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 90.15 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 90.07 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 90.04 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 90.02 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 89.99 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 89.94 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 89.83 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 89.79 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 89.65 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 89.54 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 89.51 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 89.44 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 89.42 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 89.42 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 89.31 | |
| cd01572 | 268 | QPRTase Quinolinate phosphoribosyl transferase (QA | 89.27 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 89.23 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 89.2 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 89.09 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 89.09 | |
| PRK12653 | 220 | fructose-6-phosphate aldolase; Reviewed | 89.07 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 89.0 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 88.91 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 88.91 | |
| PF02126 | 308 | PTE: Phosphotriesterase family; InterPro: IPR00155 | 88.78 | |
| COG0821 | 361 | gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat | 88.75 | |
| TIGR03239 | 249 | GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co | 88.73 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 88.71 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 88.65 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 88.55 | |
| cd01568 | 269 | QPRTase_NadC Quinolinate phosphoribosyl transferas | 88.54 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 88.5 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 88.39 | |
| cd00537 | 274 | MTHFR Methylenetetrahydrofolate reductase (MTHFR). | 88.32 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 88.29 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 88.27 | |
| TIGR02311 | 249 | HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola | 88.16 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 88.14 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 87.93 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 87.86 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 87.85 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 87.8 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 87.79 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 87.77 | |
| PRK12655 | 220 | fructose-6-phosphate aldolase; Reviewed | 87.77 | |
| PRK09250 | 348 | fructose-bisphosphate aldolase; Provisional | 87.74 | |
| cd01573 | 272 | modD_like ModD; Quinolinate phosphoribosyl transfe | 87.72 | |
| cd00453 | 340 | FTBP_aldolase_II Fructose/tagarose-bisphosphate al | 87.71 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 87.62 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 87.56 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 87.47 | |
| PLN02591 | 250 | tryptophan synthase | 87.45 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 87.43 | |
| TIGR00078 | 265 | nadC nicotinate-nucleotide pyrophosphorylase. Syno | 87.42 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 87.42 | |
| PRK07535 | 261 | methyltetrahydrofolate:corrinoid/iron-sulfur prote | 87.41 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 87.38 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 87.23 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 87.13 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 86.93 | |
| PRK01222 | 210 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 86.83 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 86.81 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 86.73 | |
| cd00953 | 279 | KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas | 86.71 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 86.53 | |
| PRK08227 | 264 | autoinducer 2 aldolase; Validated | 86.51 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 86.5 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 86.43 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 86.36 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 86.26 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 86.13 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 85.59 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 85.39 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 85.26 | |
| TIGR02990 | 239 | ectoine_eutA ectoine utilization protein EutA. Mem | 85.18 | |
| PRK02227 | 238 | hypothetical protein; Provisional | 85.02 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 84.97 | |
| PRK07534 | 336 | methionine synthase I; Validated | 84.93 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 84.92 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 84.92 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 84.85 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 84.73 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 84.66 | |
| PRK09197 | 350 | fructose-bisphosphate aldolase; Provisional | 84.52 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 84.39 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 84.36 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 84.29 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 84.04 | |
| TIGR00874 | 317 | talAB transaldolase. This family includes the majo | 84.04 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 83.89 | |
| PRK13753 | 279 | dihydropteroate synthase; Provisional | 83.84 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 83.77 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 83.63 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 83.55 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 83.52 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 83.48 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 83.3 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 83.22 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 83.12 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 83.1 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 83.02 | |
| PRK05269 | 318 | transaldolase B; Provisional | 82.71 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 82.45 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 82.38 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 82.35 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 82.34 | |
| PRK07695 | 201 | transcriptional regulator TenI; Provisional | 82.32 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 82.3 | |
| TIGR01520 | 357 | FruBisAldo_II_A fructose-bisphosphate aldolase, cl | 82.28 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 82.16 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 82.1 | |
| PRK06498 | 531 | isocitrate lyase; Provisional | 82.06 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 82.03 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 82.02 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 81.91 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 81.91 | |
| COG3836 | 255 | HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola | 81.86 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 81.85 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 81.83 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 81.74 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 81.74 | |
| cd03315 | 265 | MLE_like Muconate lactonizing enzyme (MLE) like su | 81.68 | |
| PRK08645 | 612 | bifunctional homocysteine S-methyltransferase/5,10 | 81.66 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 81.57 | |
| PRK07084 | 321 | fructose-bisphosphate aldolase; Provisional | 81.39 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 81.36 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 81.26 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 81.12 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 81.01 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 80.96 | |
| cd03319 | 316 | L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat | 80.79 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 80.68 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 80.67 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 80.61 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 80.57 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 80.52 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 80.5 | |
| cd06320 | 275 | PBP1_allose_binding Periplasmic allose-binding dom | 80.49 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 80.49 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 80.38 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 80.25 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 80.15 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 80.1 |
| >PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-68 Score=478.89 Aligned_cols=165 Identities=53% Similarity=0.889 Sum_probs=138.4
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
||+|+.+|+++|++|+||+|+|||||++|+++|++|+|+||||||+||++|||+||.+||||||+||+++|+||++++|+
T Consensus 1 kk~t~~~l~~~k~~g~ki~~lTaYD~~~A~~~d~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rga~~~~v 80 (261)
T PF02548_consen 1 KKVTVSDLRKMKQKGEKIVMLTAYDYPSARIADEAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRGAPNAFV 80 (261)
T ss_dssp ----HHHHHHHHHHT--EEEEE--SHHHHHHHHHTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-TSSEE
T ss_pred CCccHHHHHHHHhCCCcEEEEecccHHHHHHHHHcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhcCCCceE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccCCcccccccccCccccccCHH
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVT 236 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiGLtPQ~~~~~GGykvqGkt~~ 236 (243)
++||||+||+.|+++|++||.|++||+|||+||||||.+. .++|++|+++|||||||||||||+++++||||+||||++
T Consensus 81 v~DmPf~sy~~s~e~av~nA~rl~ke~GadaVKlEGg~~~-~~~i~~l~~~GIPV~gHiGLtPQ~~~~~GGyr~qGk~~~ 159 (261)
T PF02548_consen 81 VADMPFGSYQASPEQAVRNAGRLMKEAGADAVKLEGGAEI-AETIKALVDAGIPVMGHIGLTPQSVHQLGGYRVQGKTAE 159 (261)
T ss_dssp EEE--TTSSTSSHHHHHHHHHHHHHTTT-SEEEEEBSGGG-HHHHHHHHHTT--EEEEEES-GGGHHHHTSS--CSTSHH
T ss_pred EecCCcccccCCHHHHHHHHHHHHHhcCCCEEEeccchhH-HHHHHHHHHCCCcEEEEecCchhheeccCCceEEecCHH
Confidence 9999999999999999999999999999999999999865 566999999999999999999999999999999999999
Q ss_pred hhcccc
Q 026125 237 SAVKVF 242 (243)
Q Consensus 237 ~A~~ll 242 (243)
+|++|+
T Consensus 160 ~a~~l~ 165 (261)
T PF02548_consen 160 EAEKLL 165 (261)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999886
|
1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D. |
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-65 Score=470.55 Aligned_cols=185 Identities=85% Similarity=1.325 Sum_probs=174.2
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCH
Q 026125 58 MSNIPENSVYGGPKPQNPNQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITL 137 (243)
Q Consensus 58 ~s~~~~~~~~~~~~~~~~~~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTl 137 (243)
||+.|+.++|+.+.++.+.+|+|+.+|+++|++|+||+|+|||||++|+++|++|||+||||||++|++|||+||.+|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~k~ti~~l~~~k~~g~kivmlTAyD~~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtl 80 (332)
T PLN02424 1 MSNLPEDTVYGGPKPQNPAQRVTLRTLRQKYRRGEPITMVTAYDYPSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITL 80 (332)
T ss_pred CCCCCcccccCCCCcccCCCCcCHHHHHHHHhCCCcEEEEecCCHHHHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCH
Confidence 68899999998887655456799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccCC
Q 026125 138 EEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGL 217 (243)
Q Consensus 138 deMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiGL 217 (243)
|||++|+++|+||++++|+|+|||||||+.|+|++++||.|+|+|+||++||||||......+|++|+++||||||||||
T Consensus 81 d~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~~~~~~~I~~l~~~GIPV~gHiGL 160 (332)
T PLN02424 81 DEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRMLKEGGMDAVKLEGGSPSRVTAAKAIVEAGIAVMGHVGL 160 (332)
T ss_pred HHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCcHHHHHHHHHHHHcCCCEEEeecc
Confidence 99999999999999999999999999999899999999999999999999999999323456699999999999999999
Q ss_pred cccccccccCccccccCHHhhcccc
Q 026125 218 TPQAISVLGGFRPQGKNVTSAVKVF 242 (243)
Q Consensus 218 tPQ~~~~~GGykvqGkt~~~A~~ll 242 (243)
|||+++++||||+|||+.++|++|+
T Consensus 161 tPQs~~~lGGykvqGr~~~~a~~li 185 (332)
T PLN02424 161 TPQAISVLGGFRPQGRTAESAVKVV 185 (332)
T ss_pred cceeehhhcCccccCCCHHHHHHHH
Confidence 9999999999999999999988875
|
|
| >COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-65 Score=458.09 Aligned_cols=164 Identities=51% Similarity=0.848 Sum_probs=158.8
Q ss_pred CCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 78 ~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
++|+.+|+++|++++||+|+|||||++|++++++|+|+||||||+||+++||++|++||+|||++|+++|+||++++|++
T Consensus 1 ~~t~~~~~~~k~~~~ki~~lTAYD~~~A~~~d~agvd~lLVGDSlgmvv~G~~sTl~Vsl~~mi~ht~aV~Rga~~~~vv 80 (268)
T COG0413 1 KITTRTLIKMKQEGEKIVMLTAYDYPFAKLFDQAGVDVLLVGDSLGMVVLGYDSTLPVTLEDMIYHTKAVRRGAPNAFVV 80 (268)
T ss_pred CccHHHHHHHHhcCCceEEEeccccHHHhhhhhcCCcEEEEeccHHHHHcCCCCcceecHHHHHHHHHHHHhcCCCeeEE
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccCCcccccccccCccccccCHHh
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTS 237 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiGLtPQ~~~~~GGykvqGkt~~~ 237 (243)
+|||||||+.|++++++||.|+|||+|||+||||||.+. .++|++|+++|||||||||||||+++++||||+|||+.++
T Consensus 81 ~DmPF~sy~~s~~~a~~nA~r~~ke~gA~aVKlEGG~~~-~~~i~~L~~~gIPV~gHiGLtPQ~v~~~GGykvqGr~~~~ 159 (268)
T COG0413 81 ADLPFGSYEVSPEQALKNAARLMKEAGADAVKLEGGEEM-AETIKRLTERGIPVMGHIGLTPQSVNWLGGYKVQGRTEES 159 (268)
T ss_pred eCCCCcccCCCHHHHHHHHHHHHHHhCCCEEEEcCCHHH-HHHHHHHHHcCCceEEEecCChhhhhccCCeeeecCCHHH
Confidence 999999999999999999999999999999999999765 5668999999999999999999999999999999999999
Q ss_pred hcccc
Q 026125 238 AVKVF 242 (243)
Q Consensus 238 A~~ll 242 (243)
|++|+
T Consensus 160 a~~l~ 164 (268)
T COG0413 160 AEKLL 164 (268)
T ss_pred HHHHH
Confidence 99986
|
|
| >KOG2949 consensus Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-59 Score=419.79 Aligned_cols=171 Identities=79% Similarity=1.247 Sum_probs=165.8
Q ss_pred CCCCCCCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc
Q 026125 72 PQNPNQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA 151 (243)
Q Consensus 72 ~~~~~~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga 151 (243)
|+++.+++|+.+||+++..|+||+|+|||||++|++++++|+|++|||||++|+++||++|+++++|||.|||++|+||+
T Consensus 18 ~~n~~k~~Ti~~lRqk~~~g~p~t~~TAYD~~~a~~~~~ag~dv~LVGDSl~Mt~~GhdtTlpiSl~e~~yH~~sV~Rga 97 (306)
T KOG2949|consen 18 PQNSNKRVTITTLRQKHRAGEPITMVTAYDYPSAVHFDTAGIDVCLVGDSLAMTVHGHDTTLPISLEEMLYHCRSVARGA 97 (306)
T ss_pred cccccceeeHHHHHHHHhcCCceEEEEecccchhhhhhhcCCcEEEeccchhheeeccccceeeeHHHHHHHHHHHHccC
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccCCcccccccccCcccc
Q 026125 152 KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQ 231 (243)
Q Consensus 152 ~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiGLtPQ~~~~~GGykvq 231 (243)
+++++++|||||+|+.+.+++++||++.||++|+++||+|||.....+++++|+++|||||||+|||||+++.+||||+|
T Consensus 98 ~~~llv~DlPFgtyeS~~sda~knAv~vmk~~g~~~vK~EgGs~~~~~~~~~l~ergipV~gHvGLTPQ~v~~lGGyk~Q 177 (306)
T KOG2949|consen 98 KRPLLVGDLPFGTYESSWSDAVKNAVRVMKEGGMDAVKLEGGSNSRITAAKRLVERGIPVMGHVGLTPQAVSVLGGYKPQ 177 (306)
T ss_pred CCceEEEecCcccccccHHHHHHHHHHHHHhcCCceEEEccCcHHHHHHHHHHHHcCCceeeeccCChhhhhhccCcCcc
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred ccCHHhhcccc
Q 026125 232 GKNVTSAVKVF 242 (243)
Q Consensus 232 Gkt~~~A~~ll 242 (243)
||+..+|.+|+
T Consensus 178 Gr~~~~a~~l~ 188 (306)
T KOG2949|consen 178 GRNIASAVKLV 188 (306)
T ss_pred chhHHHHHHHH
Confidence 99999988875
|
|
| >TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-59 Score=419.86 Aligned_cols=163 Identities=46% Similarity=0.762 Sum_probs=156.3
Q ss_pred CCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 78 ~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
|.|+.+|+++|++|+||+|+||||++||+++|++|||+||||||++|+++||+||.+||+|||++|+++|+||++++|||
T Consensus 1 ~~t~~~~~~~~~~g~~i~m~tayD~~sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv 80 (263)
T TIGR00222 1 KKTTLSLLQKKKQEEKIVAITAYDYSFAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIV 80 (263)
T ss_pred CCcHHHHHHHHhCCCcEEEEeccCHHHHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccCCcccccccccCccccccCHHh
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTS 237 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiGLtPQ~~~~~GGykvqGkt~~~ 237 (243)
+||||+||+ ++|++++||.|+++|+||++||||||.+. .+.|++|+++|||||||||||||+++++||||+||||.++
T Consensus 81 ~DmPf~sy~-~~e~a~~na~rl~~eaGa~aVkiEgg~~~-~~~i~~l~~~gIpV~gHiGltPq~a~~~ggy~~qgrt~~~ 158 (263)
T TIGR00222 81 TDLPFMSYA-TPEQALKNAARVMQETGANAVKLEGGEWL-VETVQMLTERGVPVVGHLGLTPQSVNILGGYKVQGKDEEA 158 (263)
T ss_pred eCCCcCCCC-CHHHHHHHHHHHHHHhCCeEEEEcCcHhH-HHHHHHHHHCCCCEEEecCCCceeEeecCCeeecCCCHHH
Confidence 999999997 79999999999999999999999999765 4558999999999999999999999999999999999999
Q ss_pred hcccc
Q 026125 238 AVKVF 242 (243)
Q Consensus 238 A~~ll 242 (243)
|++++
T Consensus 159 a~~~i 163 (263)
T TIGR00222 159 AKKLL 163 (263)
T ss_pred HHHHH
Confidence 88765
|
Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. |
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-55 Score=399.34 Aligned_cols=164 Identities=52% Similarity=0.891 Sum_probs=157.2
Q ss_pred CCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 78 ~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
++|+.+|+++|++++||+|+||||++||+++|++|||+|+||||++|+++|||||+++|+|||++|+++|+|++++|||+
T Consensus 1 ~~t~~~lr~~~~~g~~i~~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vv 80 (264)
T PRK00311 1 RVTISDLQKMKQEGEKIVMLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVV 80 (264)
T ss_pred CCCHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccCCcccccccccCccccccCHHh
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTS 237 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiGLtPQ~~~~~GGykvqGkt~~~ 237 (243)
+|||||+|+.|++++++|+.|+++++||++||||||.+. ...|++|+++|||||||||||||+.+++|||++||||.++
T Consensus 81 aD~pfg~y~~~~~~av~~a~r~~~~aGa~aVkiEdg~~~-~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~ 159 (264)
T PRK00311 81 ADMPFGSYQASPEQALRNAGRLMKEAGAHAVKLEGGEEV-AETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEA 159 (264)
T ss_pred EeCCCCCccCCHHHHHHHHHHHHHHhCCeEEEEcCcHHH-HHHHHHHHHCCCCEeeeecccceeecccCCeeeecCCHHH
Confidence 999999999899999999999999899999999999765 4558999999999999999999999999999999999988
Q ss_pred hcccc
Q 026125 238 AVKVF 242 (243)
Q Consensus 238 A~~ll 242 (243)
+++++
T Consensus 160 a~~~i 164 (264)
T PRK00311 160 AEKLL 164 (264)
T ss_pred HHHHH
Confidence 87764
|
|
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-53 Score=382.59 Aligned_cols=161 Identities=53% Similarity=0.903 Sum_probs=153.5
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
+.+|+++|++++||+|+||||++||+++|++|||+|+||||++|+++|||||+++|+|||++|+++|+|++++|||++||
T Consensus 1 ~~~lr~l~~~~~~l~~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~ 80 (254)
T cd06557 1 IPDLQKMKKAGEKIVMLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADM 80 (254)
T ss_pred ChhHHHHHhCCCcEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeC
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccCCcccccccccCccccccCHHhhcc
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVK 240 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiGLtPQ~~~~~GGykvqGkt~~~A~~ 240 (243)
|||+|+.|++++++|+.|+++|+||++||||||.+. ...|++|+++|||||||||||||+.+++|||++||||.+++++
T Consensus 81 ~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~~~~-~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~ 159 (254)
T cd06557 81 PFGSYQTSPEQALRNAARLMKEAGADAVKLEGGAEV-AETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAER 159 (254)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCcHHH-HHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHH
Confidence 999998889999999999999999999999999765 4558999999999999999999999999999999999988776
Q ss_pred cc
Q 026125 241 VF 242 (243)
Q Consensus 241 ll 242 (243)
++
T Consensus 160 ~i 161 (254)
T cd06557 160 LL 161 (254)
T ss_pred HH
Confidence 54
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=307.82 Aligned_cols=158 Identities=35% Similarity=0.592 Sum_probs=148.0
Q ss_pred HHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCC
Q 026125 82 THLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (243)
Q Consensus 82 ~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmP 161 (243)
.+|+++|++|+||+++||||++||+++|++|+|+|+||||.+|+.+||||+..+|+|||++|+++|+|++++++|++|||
T Consensus 2 ~~~~~~~~~~~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~ 81 (240)
T cd06556 2 WLLQKYKQEKERFATLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLP 81 (240)
T ss_pred HhHHHHHhCCCeEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCC
Confidence 46888888999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccCCcccccccccCccccccCHHhhccc
Q 026125 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKV 241 (243)
Q Consensus 162 fgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiGLtPQ~~~~~GGykvqGkt~~~A~~l 241 (243)
||+|+ +++++++|+.++++ +||++|||||+.+. ...|+++++++||||||+|++||+.+++||||+|||+.++++++
T Consensus 82 ~G~g~-~~~~~~~~~~~l~~-aGa~gv~iED~~~~-~~~i~ai~~a~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~a 158 (240)
T cd06556 82 FGAYG-APTAAFELAKTFMR-AGAAGVKIEGGEWH-IETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQL 158 (240)
T ss_pred CCCCc-CHHHHHHHHHHHHH-cCCcEEEEcCcHHH-HHHHHHHHHcCCeEEEEeCCchhhhhccCCceeeccCHHHHHHH
Confidence 98885 88999999999996 99999999999765 44589999999999999999999999999999999998877664
Q ss_pred c
Q 026125 242 F 242 (243)
Q Consensus 242 l 242 (243)
+
T Consensus 159 i 159 (240)
T cd06556 159 I 159 (240)
T ss_pred H
Confidence 3
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-23 Score=186.13 Aligned_cols=107 Identities=24% Similarity=0.353 Sum_probs=100.8
Q ss_pred HHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC
Q 026125 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG 163 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg 163 (243)
||+++++++||+++++||+.||+++|++|||+|++||+..++.+|+||+..+|++||++|+++|+++++.| +++|+|+|
T Consensus 1 ~r~l~~~~~~i~~~~~~D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~P-v~~D~~~G 79 (243)
T cd00377 1 LRALLESGGPLVLPGAWDALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLP-VIADADTG 79 (243)
T ss_pred ChhHHhCCCcEEecCCCCHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCC-EEEEcCCC
Confidence 57888999999999999999999999999999999999999999999999999999999999999999888 89999995
Q ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 164 TYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 164 sY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
|+ +++++.+|+.++++ +||++|+|||+.
T Consensus 80 -~g-~~~~~~~~v~~~~~-~G~~gv~iED~~ 107 (243)
T cd00377 80 -YG-NALNVARTVRELEE-AGAAGIHIEDQV 107 (243)
T ss_pred -CC-CHHHHHHHHHHHHH-cCCEEEEEecCC
Confidence 84 88999999888885 999999999984
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-17 Score=148.32 Aligned_cols=106 Identities=27% Similarity=0.384 Sum_probs=89.4
Q ss_pred HHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC
Q 026125 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF 162 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf 162 (243)
||++++++++++++++||+.||+++|++|||++. .|.+++.+ +|+||.+.+|++||+.+++.|++.++.| |++|...
T Consensus 1 fr~L~~~~~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s-~G~pD~~~lt~~e~~~~~~~I~~~~~iP-v~vD~d~ 78 (238)
T PF13714_consen 1 FRQLHEPGKPLVLPNVWDALSARLAERAGFDAIATSGAGVAAS-LGYPDGGLLTLTEMLAAVRRIARAVSIP-VIVDADT 78 (238)
T ss_dssp HHHHHHSSSSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHH-TTS-SSS-S-HHHHHHHHHHHHHHSSSE-EEEE-TT
T ss_pred ChhhhcCCCcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHH-cCCCCCCCCCHHHHHHHHHHHHhhhcCc-EEEEccc
Confidence 6888888899999999999999999999999996 55566654 4999999999999999999999999877 7899988
Q ss_pred CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 163 GTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 163 gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
+|+.++++..+++.++. ++||.+|.|||.
T Consensus 79 -GyG~~~~~v~~tv~~~~-~aG~agi~IEDq 107 (238)
T PF13714_consen 79 -GYGNDPENVARTVRELE-RAGAAGINIEDQ 107 (238)
T ss_dssp -TSSSSHHHHHHHHHHHH-HCT-SEEEEESB
T ss_pred -ccCchhHHHHHHHHHHH-HcCCcEEEeecc
Confidence 78655999999998888 599999999999
|
... |
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-17 Score=151.31 Aligned_cols=109 Identities=18% Similarity=0.297 Sum_probs=99.7
Q ss_pred HHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 82 THLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 82 ~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
..||++++.+++++++++||+.||+++|++||++|. .|.++++..+|+||.+.+|++||+.+++.|++.++.| |++|.
T Consensus 7 ~~lr~ll~~~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iP-viaD~ 85 (292)
T PRK11320 7 ARFRAALAAEKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLP-LLVDI 85 (292)
T ss_pred HHHHHHHcCCCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCC-EEEEC
Confidence 459999999999999999999999999999999995 6667877899999999999999999999999999998 78888
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
.- +|+ ++++..+++.++. ++||.+|.|||..
T Consensus 86 d~-GyG-~~~~v~r~V~~~~-~aGaagi~IEDq~ 116 (292)
T PRK11320 86 DT-GFG-GAFNIARTVKSMI-KAGAAAVHIEDQV 116 (292)
T ss_pred CC-CCC-CHHHHHHHHHHHH-HcCCeEEEEecCC
Confidence 88 786 8999999998888 6999999999963
|
|
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.5e-17 Score=150.75 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=97.5
Q ss_pred HHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEe-CcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 82 THLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 82 ~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILV-GDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
..||++++++++++++++||+.||+++|++|++++.+ |.+++...+|+||.+.+|++||+.+++.|++.++.| |++|.
T Consensus 6 ~~~r~l~~~~~~l~~p~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lP-v~aD~ 84 (294)
T TIGR02319 6 RTFRELMNAPEILVVPSAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVP-VIMDA 84 (294)
T ss_pred HHHHHHhcCCCcEEeecCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCC-EEEEC
Confidence 4699999999999999999999999999999999975 777777889999999999999999999999999988 78888
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
.- +|+ ++.+..+++.++. ++||.+|.|||..
T Consensus 85 dt-GyG-~~~~v~r~V~~~~-~aGaagi~IEDq~ 115 (294)
T TIGR02319 85 DA-GYG-NAMSVWRATREFE-RVGIVGYHLEDQV 115 (294)
T ss_pred CC-CCC-CcHHHHHHHHHHH-HcCCeEEEEECCC
Confidence 87 785 5566778877777 6999999999963
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.1e-17 Score=147.35 Aligned_cols=107 Identities=19% Similarity=0.230 Sum_probs=96.5
Q ss_pred HHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCC
Q 026125 83 HLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (243)
Q Consensus 83 ~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmP 161 (243)
.||++++.++++.++++||+.||++++++||++|. .|.+++. .+|+||.+.+|++||+.+++.|++.++.| |++|..
T Consensus 4 ~lr~l~~~~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~-~lG~pD~g~lt~~e~~~~~~~I~~~~~iP-viaD~d 81 (285)
T TIGR02317 4 AFRAALAKEDILQIPGAINAMAALLAERAGFEAIYLSGAAVAA-SLGLPDLGITTLDEVAEDARRITRVTDLP-LLVDAD 81 (285)
T ss_pred HHHHHHhCCCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHH-hCCCCCCCCCCHHHHHHHHHHHHhccCCC-EEEECC
Confidence 59999999999999999999999999999999996 5555555 89999999999999999999999999988 788888
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 162 fgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
- +|+ ++++..+++.++. ++||.+|.|||..
T Consensus 82 ~-GyG-~~~~v~~tv~~~~-~aG~agi~IEDq~ 111 (285)
T TIGR02317 82 T-GFG-EAFNVARTVREME-DAGAAAVHIEDQV 111 (285)
T ss_pred C-CCC-CHHHHHHHHHHHH-HcCCeEEEEecCC
Confidence 8 785 6999999988888 6999999999963
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-16 Score=145.58 Aligned_cols=108 Identities=18% Similarity=0.145 Sum_probs=94.8
Q ss_pred HHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeC-cchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 82 THLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVG-DSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 82 ~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVG-DSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
..||++.++++.+.++++||+.||++++++||++|.++ .+++.. +|+||.+.+|++||+.+++.|++.++.| |++|+
T Consensus 5 ~~lr~~l~~~~~~~~pg~~D~lSAri~e~aGf~ai~~ss~~va~s-lG~pD~g~l~~~e~~~~~~~I~~~~~lP-v~aD~ 82 (290)
T TIGR02321 5 QALRAALDSGRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSAS-YAVPDANILSMSTHLEMMRAIASTVSIP-LIADI 82 (290)
T ss_pred HHHHHHHhCCCCEEeccccCHHHHHHHHHcCCCEEEECHHHHHHH-CCCCCcccCCHHHHHHHHHHHHhccCCC-EEEEC
Confidence 46999999999999999999999999999999999655 455544 9999999999999999999999999988 78999
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
.- +|+ ++.+..+++.++. ++||.+|.|||..
T Consensus 83 d~-GyG-~~~~v~~tV~~~~-~aGvagi~IEDq~ 113 (290)
T TIGR02321 83 DT-GFG-NAVNVHYVVPQYE-AAGASAIVMEDKT 113 (290)
T ss_pred CC-CCC-CcHHHHHHHHHHH-HcCCeEEEEeCCC
Confidence 88 785 4557888887777 6999999999973
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.8e-16 Score=141.44 Aligned_cols=108 Identities=23% Similarity=0.352 Sum_probs=96.5
Q ss_pred HHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEE-EeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 82 THLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 82 ~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiI-LVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
..||++++++.+++++++||+.+|++++++||+.| +.|.+++. .+|+||....|++|++++++.|.+++..| |++|.
T Consensus 8 ~~fR~l~~~~~~~~~pg~~d~~sA~la~~aGF~al~~sg~~vA~-slG~pD~~~~t~~e~~~~vrrI~~a~~lP-v~vD~ 85 (289)
T COG2513 8 AAFRALHASGDPLVLPGAWDAGSALLAERAGFKALYLSGAGVAA-SLGLPDLGITTLDEVLADARRITDAVDLP-VLVDI 85 (289)
T ss_pred HHHHHHHhCCCCEEecCCcCHHHHHHHHHcCCeEEEeccHHHHH-hcCCCccccccHHHHHHHHHHHHhhcCCc-eEEec
Confidence 46999999999999999999999999999999999 57777777 99999999999999999999999999999 56777
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
.- +|+ ++.++.+++.++. ++|+.+|.|||-.
T Consensus 86 dt-GfG-~~~nvartV~~~~-~aG~agi~iEDq~ 116 (289)
T COG2513 86 DT-GFG-EALNVARTVRELE-QAGAAGIHIEDQV 116 (289)
T ss_pred cC-CCC-cHHHHHHHHHHHH-HcCcceeeeeecc
Confidence 66 675 4888888887777 5999999999874
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=139.60 Aligned_cols=104 Identities=16% Similarity=0.113 Sum_probs=93.5
Q ss_pred HHHhhhCCCcEEEEecCCHHHHHHHHHc---------CCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCC
Q 026125 84 LRQKHKNGEPITMVTAYDYPSAVHLDSA---------GIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR 153 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA~iae~A---------GiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~ 153 (243)
||++.++++++.++++||+.||+++|++ |||+|. .|.+++ ..+|+||...+|++||+.+++.|.+.++.
T Consensus 1 lr~~l~~~~~l~~p~~~D~~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a-~s~G~pD~~~~~~~e~~~~~~~I~~a~~~ 79 (285)
T TIGR02320 1 LRQLLHSKPLERLMEAHNGLSALIAEEARVEVGGESLGFDGIWSSSLTDS-TSRGVPDIEEASWTQRLDVVEFMFDVTTK 79 (285)
T ss_pred ChHHhcCCCCEEEecCcCHHHHHHHHHhhhcccCcCCCcCEEEechHHHH-HHCCCCCcCcCCHHHHHHHHHHHHhhcCC
Confidence 5677788899999999999999999999 999996 444555 56999999999999999999999999988
Q ss_pred CcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 154 PLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 154 ~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
| |++|...| . ++++..+++.++. ++||.+|.|||.
T Consensus 80 P-v~~D~d~G--g-~~~~v~r~V~~l~-~aGvaGi~iEDq 114 (285)
T TIGR02320 80 P-IILDGDTG--G-NFEHFRRLVRKLE-RRGVSAVCIEDK 114 (285)
T ss_pred C-EEEecCCC--C-CHHHHHHHHHHHH-HcCCeEEEEecc
Confidence 8 79999997 3 8999999998888 599999999995
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PRK15063 isocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.3e-12 Score=122.29 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=94.4
Q ss_pred CCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEE-eCcchhh----hhccCCCCccCCHHHHHHHHHHHHcccC-
Q 026125 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL-VGDSAAM----VVHGHDTTLPITLEEMLVHCRAVARGAK- 152 (243)
Q Consensus 79 ~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiIL-VGDSlgm----v~lG~~dT~~vTldeMi~h~~aV~Rga~- 152 (243)
..-..|+++.+++.++..++|||..+|++++++|+++|. .|-.+++ ..+||||...+++++|...++.|.++..
T Consensus 50 ~~a~kLr~lL~~~~~~~~~Ga~d~~~A~q~~~aGf~AIy~SG~~vAa~~~~s~~g~PD~~l~p~~~v~~~v~~I~~a~~~ 129 (428)
T PRK15063 50 RGAEKLWELLHGEPYVNALGALTGNQAVQQVKAGLKAIYLSGWQVAADANLAGQMYPDQSLYPANSVPAVVKRINNALRR 129 (428)
T ss_pred HHHHHHHHHHhCCCcEEecCCCCHHHHHHHHHhCCCEEEECHHHHhcCcccccCCCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 445678998899999999999999999999999999995 6656666 5799999999999999999999998863
Q ss_pred -----------------CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 153 -----------------RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 153 -----------------~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
.| ||+|..- +|+ ++.++.+++.+++ ++||.+|+|||.
T Consensus 130 ~d~~~~~~~~~~~~d~~~P-IiADaDt-GfG-g~~nv~~~vk~~i-eAGaAGIhiEDQ 183 (428)
T PRK15063 130 ADQIQWSEGDKGYIDYFAP-IVADAEA-GFG-GVLNAFELMKAMI-EAGAAGVHFEDQ 183 (428)
T ss_pred hhhHhhhhcccccccCCCC-eEEECCC-CCC-CcHHHHHHHHHHH-HcCCeEEEEeCC
Confidence 45 7888776 674 5667888877766 799999999997
|
|
| >TIGR01346 isocit_lyase isocitrate lyase | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.8e-05 Score=78.55 Aligned_cols=105 Identities=13% Similarity=0.102 Sum_probs=83.1
Q ss_pred HHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEE-eCcchhhhh----ccCCCCccCCHHHHHHHHHHHHcc--------
Q 026125 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL-VGDSAAMVV----HGHDTTLPITLEEMLVHCRAVARG-------- 150 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiIL-VGDSlgmv~----lG~~dT~~vTldeMi~h~~aV~Rg-------- 150 (243)
|++..++|..+..++|+|..+|...+++ +|.|. .|=..+... .++||-...+++.+..-++.|.++
T Consensus 51 l~~~~~~~~~~~tlGAld~~qa~q~~ka-l~aIY~SGwq~Sa~~~~~~e~~PD~s~yp~~tVp~~V~~i~~aq~~hDr~q 129 (527)
T TIGR01346 51 LTQHGDNKTYSNTFGALDPVQASQMAKY-LDAIYLSGWQCSSTANTSNEPGPDLADYPADTVPNKVEHLFNAQLFHDRKQ 129 (527)
T ss_pred HHHhhhcCCceeeccccCHHHHHHHHHH-hhheehhHHHHHhhhcccCCCCCCcccccccccHHHHHHHHHHHHHHHHHH
Confidence 4445567789999999999999999999 99995 454444432 599999999999999888888776
Q ss_pred -------------------cCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 151 -------------------AKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 151 -------------------a~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
.-.| |++|..- +|+ +..++.+++.+++ ++||.+|.|||.
T Consensus 130 ~~~~~~~~~~~r~~~~~~D~~iP-IiaD~Dt-GyG-~~~~v~~~vk~~i-eaGAaGI~IEDq 187 (527)
T TIGR01346 130 REARDTSVDNERSKTPYIDYLVP-IVADGDA-GFG-GATAVFKLQKAFI-ERGAAGVHWEDQ 187 (527)
T ss_pred HHhccccchhhhccccccccccc-eEEECCC-CCC-CcHHHHHHHHHHH-HcCCeEEEEEcC
Confidence 2233 7888877 775 4555788888777 699999999996
|
Isocitrate lyase and malate synthase are the enzymes of the glyoxylate shunt, a pathway associated with the TCA cycle. |
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00031 Score=65.12 Aligned_cols=123 Identities=16% Similarity=0.147 Sum_probs=84.5
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCC--C-CccCCHHHHHHHHHHHHcccCC-CcEE---eeCCCCCCcCCHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHD--T-TLPITLEEMLVHCRAVARGAKR-PLLV---GDLPFGTYESSTNQAVDTA 176 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~--d-T~~vTldeMi~h~~aV~Rga~~-~fvV---aDmPfgsY~~s~e~Av~nA 176 (243)
+.+-.+++|+-.|.+-|...---.|+- . -..++.|||+...++++.+... .|+| .|--+.+. ..++|++-+
T Consensus 95 tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~--g~deAI~Ra 172 (290)
T TIGR02321 95 VVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGL--GQQEAVRRG 172 (290)
T ss_pred HHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccC--CHHHHHHHH
Confidence 356678999999999997655555553 2 2357999999999999876433 2554 56544333 579999998
Q ss_pred HHHHHHhCCCEEEeCCCCCchHHHHHHHHHc--C-CceeeccCCccc----ccccccCccc
Q 026125 177 VRILKEGGMDAIKLEGGSPSRITAARGIVEA--G-IAVMGHVGLTPQ----AISVLGGFRP 230 (243)
Q Consensus 177 ~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~--G-IPV~GHiGLtPQ----~~~~~GGykv 230 (243)
.... ++|||+|.+|++.....+ +++++++ + +||+-.-|.+|. ....+|+|++
T Consensus 173 ~aY~-eAGAD~ifv~~~~~~~~e-i~~~~~~~~~p~pv~~~~~~~p~~~~~~l~~lg~~~~ 231 (290)
T TIGR02321 173 QAYE-EAGADAILIHSRQKTPDE-ILAFVKSWPGKVPLVLVPTAYPQLTEADIAALSKVGI 231 (290)
T ss_pred HHHH-HcCCCEEEecCCCCCHHH-HHHHHHhcCCCCCeEEecCCCCCCCHHHHHHhcCCcE
Confidence 7666 799999999986322333 6677773 3 688644344453 4556776665
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.003 Score=58.44 Aligned_cols=107 Identities=12% Similarity=0.098 Sum_probs=72.6
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCC----ccCCHHHHHHHHHHHHccc-CC-CcEEeeCC--CCCCcCCHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTT----LPITLEEMLVHCRAVARGA-KR-PLLVGDLP--FGTYESSTNQAVDTA 176 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT----~~vTldeMi~h~~aV~Rga-~~-~fvVaDmP--fgsY~~s~e~Av~nA 176 (243)
.+..+++|+..|.+-|...--.-||-.. ..++.|||+...++++++. +. -+|++=.. ..+. +.+++++-|
T Consensus 98 V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~--~~~eAi~Ra 175 (285)
T TIGR02320 98 VRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGK--GMEDALKRA 175 (285)
T ss_pred HHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccC--CHHHHHHHH
Confidence 4566789999999999875544443222 4689999999999998763 33 34554433 3233 589999998
Q ss_pred HHHHHHhCCCEEEeCCCCCchHHHHHHHHHc------CCceeecc
Q 026125 177 VRILKEGGMDAIKLEGGSPSRITAARGIVEA------GIAVMGHV 215 (243)
Q Consensus 177 ~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~------GIPV~GHi 215 (243)
.+.. ++|||+|.++++.....+ ++.++++ .+||+..-
T Consensus 176 ~ay~-eAGAD~ifv~~~~~~~~e-i~~~~~~~~~~~p~~pl~~~~ 218 (285)
T TIGR02320 176 EAYA-EAGADGIMIHSRKKDPDE-ILEFARRFRNHYPRTPLVIVP 218 (285)
T ss_pred HHHH-HcCCCEEEecCCCCCHHH-HHHHHHHhhhhCCCCCEEEec
Confidence 7666 799999999975332233 4445543 46887543
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.002 Score=57.90 Aligned_cols=106 Identities=21% Similarity=0.284 Sum_probs=76.1
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCC-CccCCHHHHHHHHHHHHcccCC---CcEE--eeCCCCCCcCCHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDT-TLPITLEEMLVHCRAVARGAKR---PLLV--GDLPFGTYESSTNQAVDTAVR 178 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~d-T~~vTldeMi~h~~aV~Rga~~---~fvV--aDmPfgsY~~s~e~Av~nA~R 178 (243)
++...++|++.|.+-|...---.|+-. -..++.||++...++++.+.+. .+|+ .|--..+ ..+.+++++-+..
T Consensus 90 v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~-~~~~~eai~Ra~a 168 (243)
T cd00377 90 VRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAG-EEGLDEAIERAKA 168 (243)
T ss_pred HHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhcc-CCCHHHHHHHHHH
Confidence 445567999999998887543334322 3567999999999999998875 4455 4443322 1368999999977
Q ss_pred HHHHhCCCEEEeCCCCCchHHHHHHHHHc-CCceeec
Q 026125 179 ILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 179 l~keaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~GH 214 (243)
.. ++|||+|.+++... .+-+++++++ .+||+--
T Consensus 169 y~-~AGAD~v~v~~~~~--~~~~~~~~~~~~~Pl~~~ 202 (243)
T cd00377 169 YA-EAGADGIFVEGLKD--PEEIRAFAEAPDVPLNVN 202 (243)
T ss_pred HH-HcCCCEEEeCCCCC--HHHHHHHHhcCCCCEEEE
Confidence 77 69999999998753 3336777776 5787755
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0042 Score=57.62 Aligned_cols=102 Identities=19% Similarity=0.206 Sum_probs=75.9
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCC-ccCCHHHHHHHHHHHHcccCCC-cEE---eeCCCCCCcCCHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGAKRP-LLV---GDLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT-~~vTldeMi~h~~aV~Rga~~~-fvV---aDmPfgsY~~s~e~Av~nA~Rl 179 (243)
.+-.+++|+..|.+-|...----|+... ..++.|||+...++++.+...+ |+| .|--. .. ..++|++-+...
T Consensus 94 v~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~-~~--g~deAI~Ra~ay 170 (285)
T TIGR02317 94 VREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARA-VE--GLDAAIERAKAY 170 (285)
T ss_pred HHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCccc-cc--CHHHHHHHHHHH
Confidence 5678899999999999886555576554 4679999999999999877643 444 45432 22 589999998776
Q ss_pred HHHhCCCEEEeCCCCCchHHHHHHHHHc-CCcee
Q 026125 180 LKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVM 212 (243)
Q Consensus 180 ~keaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~ 212 (243)
. ++|||+|.+||-.. ..+ +++++++ .+|++
T Consensus 171 ~-~AGAD~vfi~g~~~-~e~-i~~~~~~i~~Pl~ 201 (285)
T TIGR02317 171 V-EAGADMIFPEALTS-LEE-FRQFAKAVKVPLL 201 (285)
T ss_pred H-HcCCCEEEeCCCCC-HHH-HHHHHHhcCCCEE
Confidence 6 69999999998653 333 6777775 46664
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.012 Score=48.49 Aligned_cols=81 Identities=26% Similarity=0.188 Sum_probs=59.0
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc--CCCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA--KRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga--~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
..|+.+.++|+|.+++.-.... .++. +.+++..|.++|++.+ +.|+++-+.|..+ .++++..+. .|+.
T Consensus 69 ~~a~~a~~~Gad~i~v~~~~~~----~~~~---~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~--~~~~~~~~~-~~~~ 138 (201)
T cd00945 69 AEVEEAIDLGADEIDVVINIGS----LKEG---DWEEVLEEIAAVVEAADGGLPLKVILETRGL--KTADEIAKA-ARIA 138 (201)
T ss_pred HHHHHHHHcCCCEEEEeccHHH----HhCC---CHHHHHHHHHHHHHHhcCCceEEEEEECCCC--CCHHHHHHH-HHHH
Confidence 5678889999999987533321 1111 4788999999999984 7888888889866 356655444 5556
Q ss_pred HHhCCCEEEeCCC
Q 026125 181 KEGGMDAIKLEGG 193 (243)
Q Consensus 181 keaGAdaVKLEGg 193 (243)
++.|+++||...|
T Consensus 139 ~~~g~~~iK~~~~ 151 (201)
T cd00945 139 AEAGADFIKTSTG 151 (201)
T ss_pred HHhCCCEEEeCCC
Confidence 6899999999876
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0025 Score=59.43 Aligned_cols=101 Identities=21% Similarity=0.256 Sum_probs=81.5
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccC-CCCccCCHHHHHHHHHHHHcccC-CCcEE-eeCCCCCCcCCHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGH-DTTLPITLEEMLVHCRAVARGAK-RPLLV-GDLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~-~dT~~vTldeMi~h~~aV~Rga~-~~fvV-aDmPfgsY~~s~e~Av~nA~Rl 179 (243)
-+.+.++++|+-.|.+-|.++--..|| ++...++.|||+...++++++.+ ..|+| +=..--.-+ ..++|++-|...
T Consensus 97 rtV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~-~ld~AI~Ra~AY 175 (289)
T COG2513 97 RTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVE-GLDDAIERAQAY 175 (289)
T ss_pred HHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhc-cHHHHHHHHHHH
Confidence 456788999999999999999888899 88899999999999999999886 34544 555443443 479999999766
Q ss_pred HHHhCCCEEEeCCCCCchHHHHHHHHHc
Q 026125 180 LKEGGMDAIKLEGGSPSRITAARGIVEA 207 (243)
Q Consensus 180 ~keaGAdaVKLEGg~~~~~~~i~~L~~~ 207 (243)
. |+|||+|..|+=.. .+-+++++++
T Consensus 176 ~-eAGAD~if~~al~~--~e~i~~f~~a 200 (289)
T COG2513 176 V-EAGADAIFPEALTD--LEEIRAFAEA 200 (289)
T ss_pred H-HcCCcEEccccCCC--HHHHHHHHHh
Confidence 6 79999999998865 3446778774
|
|
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.01 Score=55.31 Aligned_cols=101 Identities=17% Similarity=0.202 Sum_probs=75.3
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCC-ccCCHHHHHHHHHHHHcccCCC-cEE---eeCCCCCCcCCHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGAKRP-LLV---GDLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT-~~vTldeMi~h~~aV~Rga~~~-fvV---aDmPfgsY~~s~e~Av~nA~Rl 179 (243)
.+-.+++|+-.|.+-|...--.-|+-+. ..++.+||+...++++.+...+ |+| .|- +..+ ..+++++-+...
T Consensus 98 V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa-~~~~--g~deaI~Ra~aY 174 (294)
T TIGR02319 98 TREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDA-RESF--GLDEAIRRSREY 174 (294)
T ss_pred HHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecc-cccC--CHHHHHHHHHHH
Confidence 5778899999999999876555666555 4579999999999999876543 444 566 3333 689999998776
Q ss_pred HHHhCCCEEEeCCCCCchHHHHHHHHHc-CCce
Q 026125 180 LKEGGMDAIKLEGGSPSRITAARGIVEA-GIAV 211 (243)
Q Consensus 180 ~keaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV 211 (243)
. ++|||+|.+||-.. .+-+++++++ ..|+
T Consensus 175 ~-eAGAD~ifi~~~~~--~~ei~~~~~~~~~P~ 204 (294)
T TIGR02319 175 V-AAGADCIFLEAMLD--VEEMKRVRDEIDAPL 204 (294)
T ss_pred H-HhCCCEEEecCCCC--HHHHHHHHHhcCCCe
Confidence 6 69999999998542 3336778776 3465
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0032 Score=56.79 Aligned_cols=107 Identities=20% Similarity=0.183 Sum_probs=72.7
Q ss_pred HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCC--CcEEeeCCCCC-CcCCHHHHHHHHHH
Q 026125 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR--PLLVGDLPFGT-YESSTNQAVDTAVR 178 (243)
Q Consensus 102 ~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~--~fvVaDmPfgs-Y~~s~e~Av~nA~R 178 (243)
+-+.+-.+++|+..|.+-|. -.|++....++.|||+...++++++... -||++=..--. .....+++++-+..
T Consensus 88 ~~tv~~~~~aG~agi~IEDq----~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~a 163 (238)
T PF13714_consen 88 ARTVRELERAGAAGINIEDQ----RCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKA 163 (238)
T ss_dssp HHHHHHHHHCT-SEEEEESB----STTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEeecc----ccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHH
Confidence 34667788999999999999 4456778889999999999999987754 45554333211 12367999999877
Q ss_pred HHHHhCCCEEEeCCCCCchHHHHHHHH-HcCCceeecc
Q 026125 179 ILKEGGMDAIKLEGGSPSRITAARGIV-EAGIAVMGHV 215 (243)
Q Consensus 179 l~keaGAdaVKLEGg~~~~~~~i~~L~-~~GIPV~GHi 215 (243)
.. ++|||+|.++|-.. ..+ ++.++ +-+.|++-..
T Consensus 164 Y~-eAGAD~ifi~~~~~-~~~-i~~~~~~~~~Pl~v~~ 198 (238)
T PF13714_consen 164 YA-EAGADMIFIPGLQS-EEE-IERIVKAVDGPLNVNP 198 (238)
T ss_dssp HH-HTT-SEEEETTSSS-HHH-HHHHHHHHSSEEEEET
T ss_pred HH-HcCCCEEEeCCCCC-HHH-HHHHHHhcCCCEEEEc
Confidence 66 69999999999864 233 34444 3467776544
|
... |
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.007 Score=54.72 Aligned_cols=87 Identities=20% Similarity=0.181 Sum_probs=61.3
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE--eeCC------------CCCCcCCHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV--GDLP------------FGTYESSTN 170 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV--aDmP------------fgsY~~s~e 170 (243)
++-+.++|++.|-+-|.. |++...++++++. -+|+ .|+- |+--....+
T Consensus 95 ~~~l~~aGa~gv~iED~~----------------~~~~~i~ai~~a~--i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~ 156 (240)
T cd06556 95 AKTFMRAGAAGVKIEGGE----------------WHIETLQMLTAAA--VPVIAHTGLTPQSVNTSGGDEGQYRGDEAGE 156 (240)
T ss_pred HHHHHHcCCcEEEEcCcH----------------HHHHHHHHHHHcC--CeEEEEeCCchhhhhccCCceeeccCHHHHH
Confidence 555677999999998863 6777778887654 3455 5651 221123467
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHc-CCceee
Q 026125 171 QAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMG 213 (243)
Q Consensus 171 ~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~G 213 (243)
++++-|..+. ++|||+|.+|+-. .+.+++++++ .|||.|
T Consensus 157 ~ai~Ra~ay~-~AGAd~i~~e~~~---~e~~~~i~~~~~~P~~~ 196 (240)
T cd06556 157 QLIADALAYA-PAGADLIVMECVP---VELAKQITEALAIPLAG 196 (240)
T ss_pred HHHHHHHHHH-HcCCCEEEEcCCC---HHHHHHHHHhCCCCEEE
Confidence 8888886665 7999999999762 3447788876 789987
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.008 Score=55.24 Aligned_cols=96 Identities=22% Similarity=0.334 Sum_probs=66.9
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE-----E--eeCCCCCCc---CC---HH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL-----V--GDLPFGTYE---SS---TN 170 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv-----V--aDmPfgsY~---~s---~e 170 (243)
..++.+++|++.|-+-|+ +||....+++++. ..|++ . .|--+|+|. .+ .+
T Consensus 99 a~r~~~~aGa~aVkiEdg----------------~~~~~~I~al~~a-gIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~ 161 (264)
T PRK00311 99 AGRLMKEAGAHAVKLEGG----------------EEVAETIKRLVER-GIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAE 161 (264)
T ss_pred HHHHHHHhCCeEEEEcCc----------------HHHHHHHHHHHHC-CCCEeeeecccceeecccCCeeeecCCHHHHH
Confidence 467778899999988875 4788888887753 44532 1 232334441 22 34
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHc-CCceeeccCCcccc
Q 026125 171 QAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGHVGLTPQA 221 (243)
Q Consensus 171 ~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~GHiGLtPQ~ 221 (243)
++++.|..+. ++||++|.+|+-.. .++++++++ .||++| ||=-|..
T Consensus 162 ~~i~ra~a~~-eAGA~~i~lE~v~~---~~~~~i~~~l~iP~ig-iGaG~~~ 208 (264)
T PRK00311 162 KLLEDAKALE-EAGAFALVLECVPA---ELAKEITEALSIPTIG-IGAGPDC 208 (264)
T ss_pred HHHHHHHHHH-HCCCCEEEEcCCCH---HHHHHHHHhCCCCEEE-eccCCCC
Confidence 7888886655 79999999999853 457888776 799999 7766653
|
|
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.016 Score=54.04 Aligned_cols=103 Identities=18% Similarity=0.250 Sum_probs=76.1
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCC-ccCCHHHHHHHHHHHHcccCC-CcEE---eeCCCCCCcCCHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGAKR-PLLV---GDLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT-~~vTldeMi~h~~aV~Rga~~-~fvV---aDmPfgsY~~s~e~Av~nA~Rl 179 (243)
.+-.+++|+-.|.+-|...----|+... ..++.|||+...++++.+... .|+| .|--. . ...++|++-+.+.
T Consensus 99 V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~-~--~g~deAI~Ra~aY 175 (292)
T PRK11320 99 VKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALA-V--EGLDAAIERAQAY 175 (292)
T ss_pred HHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCccc-c--cCHHHHHHHHHHH
Confidence 5678899999999999886555677644 567999999999999887643 3444 45432 2 2589999998776
Q ss_pred HHHhCCCEEEeCCCCCchHHHHHHHHHc-CCceee
Q 026125 180 LKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMG 213 (243)
Q Consensus 180 ~keaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~G 213 (243)
. ++|||+|.+||-.. .+.+++++++ ..|++.
T Consensus 176 ~-eAGAD~ifi~~~~~--~~~i~~~~~~~~~Pl~~ 207 (292)
T PRK11320 176 V-EAGADMIFPEAMTE--LEMYRRFADAVKVPILA 207 (292)
T ss_pred H-HcCCCEEEecCCCC--HHHHHHHHHhcCCCEEE
Confidence 6 69999999998653 3336777763 567743
|
|
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.017 Score=52.18 Aligned_cols=97 Identities=18% Similarity=0.251 Sum_probs=77.7
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
++.+|-+..+....+.|--|-....+..|.++|+|+|- .++.||-+......|.=..+.+.+++ ...+||+-
T Consensus 115 ~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~IG------TTLsGYT~~~~~~~~pDf~lvk~l~~--~~~~vIAE 186 (229)
T COG3010 115 DLEELIARIKYPGQLAMADCSTFEEGLNAHKLGFDIIG------TTLSGYTGYTEKPTEPDFQLVKQLSD--AGCRVIAE 186 (229)
T ss_pred hHHHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCcEEe------cccccccCCCCCCCCCcHHHHHHHHh--CCCeEEee
Confidence 89999888888899999999999999999999999973 35678888555555555777788877 45668876
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
|-| .||++| .+.+ +.||++|-.-|.
T Consensus 187 ---Gr~-~tP~~A----k~a~-~~Ga~aVvVGsA 211 (229)
T COG3010 187 ---GRY-NTPEQA----KKAI-EIGADAVVVGSA 211 (229)
T ss_pred ---CCC-CCHHHH----HHHH-HhCCeEEEECcc
Confidence 567 589998 6677 689999988444
|
|
| >KOG1260 consensus Isocitrate lyase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.004 Score=61.24 Aligned_cols=106 Identities=20% Similarity=0.243 Sum_probs=66.6
Q ss_pred HHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEE-eCcchhhhhccC--CCCc---cCCHHHHHHHHHHHHcccC-----
Q 026125 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL-VGDSAAMVVHGH--DTTL---PITLEEMLVHCRAVARGAK----- 152 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiIL-VGDSlgmv~lG~--~dT~---~vTldeMi~h~~aV~Rga~----- 152 (243)
|++-+.+|...--++++|+.+|....++|.+.++ .|=-.+.+..|- ||-. --|.-++..+......-.+
T Consensus 57 lr~~~n~gtvs~t~Ga~dpvq~sq~~r~gl~~iyiSG~~cs~~~~~~~~pD~adyP~dtvP~~v~rif~~q~~h~r~q~~ 136 (492)
T KOG1260|consen 57 LREHHNEGTVSDTLGAKDPVQASQMARAGLSAIYISGWQCSATLSGKLGPDRADYPYDTVPESVERIFKSQLIHDRKQIE 136 (492)
T ss_pred HHHhccCCcccccccccCchhHHHHHHhcCCeEEeechhhhhhhccCCCCccccCCCcCCHHHHHHHHHHhhhcchhhhh
Confidence 4555556665558899999999999999999884 554444444444 4422 2233344433332222111
Q ss_pred ------------CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 153 ------------RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 153 ------------~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
.| ||+|-.. +| .++....+.+..++ |+||.+|+|||-
T Consensus 137 ~~~i~~~~~dyl~P-IIaDad~-G~-G~atnv~k~~K~fI-eaGaAGIhleDq 185 (492)
T KOG1260|consen 137 AGSIKAEESDYLIP-IIADADA-GF-GGATNVFKTVKGFI-EAGAAGIHLEDQ 185 (492)
T ss_pred hccccccccccccc-eeecCCC-CC-chHHHHHHHHHHHH-Hcccceeeeehh
Confidence 34 6644333 34 35677788888888 699999999986
|
|
| >COG2224 AceA Isocitrate lyase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0025 Score=61.96 Aligned_cols=107 Identities=15% Similarity=0.160 Sum_probs=69.0
Q ss_pred HHHhhhC---CCcEEEEecCCHHHHHHHHHcCCCEEEeCcc-hh--hhhcc--CCCCccCCHHHHHHHHHHHHc------
Q 026125 84 LRQKHKN---GEPITMVTAYDYPSAVHLDSAGIDICLVGDS-AA--MVVHG--HDTTLPITLEEMLVHCRAVAR------ 149 (243)
Q Consensus 84 Lr~~kk~---g~~ItmlTAYD~~sA~iae~AGiDiILVGDS-lg--mv~lG--~~dT~~vTldeMi~h~~aV~R------ 149 (243)
|.++.++ +..+..++|||...|.-..+||++.|.++.+ ++ ...-| |||-..-.++-.-.-++.|-+
T Consensus 54 l~~ll~e~~~~~~~~tlGal~g~qa~Q~~kagl~aiYlSGWqvaa~~n~~~~~~PDqs~Yp~~sVP~~V~rI~~al~~aD 133 (433)
T COG2224 54 LWELLHELFKEKYVNTLGALTGGQAVQMAKAGIKAIYLSGWQVAADANLAGEMYPDQSLYPANSVPDVVKRINNALRRAD 133 (433)
T ss_pred HHHHHHHhccccchhccccCCHHHHHHHHHhhhheEEeccceeeccccccCCCCCCcccCccccccHHHHHHHHHHHHHH
Confidence 4444444 8899999999999999999999999954433 33 23333 555544444333222222221
Q ss_pred ------ccC---------CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 150 ------GAK---------RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 150 ------ga~---------~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
+.. ..+||+|-.- +| .++..+.+-+.+++ |+||.+|++||-
T Consensus 134 ~~q~~~~~~~~~~~~~Dy~~PIiADada-Gf-Gg~~~~~~L~K~~I-EaGaagiH~EDQ 189 (433)
T COG2224 134 QIQWSEGKGPGDRQAVDYFLPIVADAEA-GF-GGPLNAFELMKAMI-EAGAAGVHFEDQ 189 (433)
T ss_pred HHHHHhccccccccccccccceeecccc-CC-CchHHHHHHHHHHH-HhCCceeehhhh
Confidence 111 2357866554 45 36678888888888 799999999976
|
|
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.014 Score=53.28 Aligned_cols=88 Identities=25% Similarity=0.360 Sum_probs=62.9
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE-----E--eeCCCCCCc---CC---HHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL-----V--GDLPFGTYE---SS---TNQ 171 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv-----V--aDmPfgsY~---~s---~e~ 171 (243)
.++.+++|++.|-+-|+ +||....+++++.- .|++ . .|.-+++|. .+ .++
T Consensus 97 ~r~~~~aGa~aVkiEd~----------------~~~~~~I~al~~ag-ipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~ 159 (254)
T cd06557 97 ARLMKEAGADAVKLEGG----------------AEVAETIRALVDAG-IPVMGHIGLTPQSVNQLGGYKVQGKTEEEAER 159 (254)
T ss_pred HHHHHHhCCeEEEEcCc----------------HHHHHHHHHHHHcC-CCeeccccccceeeeccCCceeccCCHHHHHH
Confidence 57788899999998876 48888888887533 4422 1 343445552 23 367
Q ss_pred HHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHc-CCceee
Q 026125 172 AVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMG 213 (243)
Q Consensus 172 Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~G 213 (243)
+++-|..+. ++||++|.+|+=.. ..++.++++ .||++|
T Consensus 160 ~i~ra~a~~-~AGA~~i~lE~v~~---~~~~~i~~~v~iP~ig 198 (254)
T cd06557 160 LLEDALALE-EAGAFALVLECVPA---ELAKEITEALSIPTIG 198 (254)
T ss_pred HHHHHHHHH-HCCCCEEEEcCCCH---HHHHHHHHhCCCCEEE
Confidence 788876665 79999999999853 357888876 799997
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.02 Score=52.07 Aligned_cols=121 Identities=26% Similarity=0.287 Sum_probs=95.1
Q ss_pred CCcEEEEecCCHHHHHHHHHcCCCEEEeC--cchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCC
Q 026125 91 GEPITMVTAYDYPSAVHLDSAGIDICLVG--DSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESS 168 (243)
Q Consensus 91 g~~ItmlTAYD~~sA~iae~AGiDiILVG--DSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s 168 (243)
+-| +++.+-|+..=-.+-+||.|+|=+| ||+ |+.....+.+|++.-++..|.-.|+.++.+-.|+ .. .
T Consensus 61 ~lP-ICVSaVep~~f~~aV~AGAdliEIGNfDsF------Y~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPH-iL--~ 130 (242)
T PF04481_consen 61 NLP-ICVSAVEPELFVAAVKAGADLIEIGNFDSF------YAQGRRFSAEEVLALTRETRSLLPDITLSVTVPH-IL--P 130 (242)
T ss_pred CCC-eEeecCCHHHHHHHHHhCCCEEEecchHHH------HhcCCeecHHHHHHHHHHHHHhCCCCceEEecCc-cc--c
Confidence 344 6788889888888889999999998 466 7888889999999999999999999999999999 43 6
Q ss_pred HHHHHHHHHHHHHHhCCCEEEeCCCCCchH------HHHHH----------HH-HcCCceeeccCCccccc
Q 026125 169 TNQAVDTAVRILKEGGMDAIKLEGGSPSRI------TAARG----------IV-EAGIAVMGHVGLTPQAI 222 (243)
Q Consensus 169 ~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~------~~i~~----------L~-~~GIPV~GHiGLtPQ~~ 222 (243)
.++=++-|.+|.+ .|||.|+-|||....+ ..|+. |. .-.|||+.-=||..=++
T Consensus 131 ld~Qv~LA~~L~~-~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS~vT~ 200 (242)
T PF04481_consen 131 LDQQVQLAEDLVK-AGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLSAVTA 200 (242)
T ss_pred HHHHHHHHHHHHH-hCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcchhhH
Confidence 7888899999885 8999999999943211 11211 11 23589998888875443
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.038 Score=49.46 Aligned_cols=78 Identities=24% Similarity=0.279 Sum_probs=60.8
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC-CCcCCHHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG-TYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg-sY~~s~e~Av~nA~Rl~ke 182 (243)
.|+.++++|+|.+++-- |.....+-++++.|.++|+++++.|+++=|.|.. ++..+++.. .++.+-
T Consensus 84 ~a~~a~~~Gad~v~v~p---------P~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~----~~L~~~ 150 (281)
T cd00408 84 LARHAEEAGADGVLVVP---------PYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETI----ARLAEH 150 (281)
T ss_pred HHHHHHHcCCCEEEECC---------CcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHH----HHHhcC
Confidence 46788999999998752 3344467899999999999999999999999963 465677766 455544
Q ss_pred hCCCEEEeCCCC
Q 026125 183 GGMDAIKLEGGS 194 (243)
Q Consensus 183 aGAdaVKLEGg~ 194 (243)
-...+||.+.+.
T Consensus 151 ~~v~giK~s~~d 162 (281)
T cd00408 151 PNIVGIKDSSGD 162 (281)
T ss_pred CCEEEEEeCCCC
Confidence 578999998864
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.035 Score=50.35 Aligned_cols=77 Identities=22% Similarity=0.219 Sum_probs=58.7
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~ke 182 (243)
.|+.++++|+|.+++-- |.....+-++++.|.+.|++.++.|+++-|.|. .++..+++.. .++.+.
T Consensus 85 ~a~~a~~~Gad~v~v~p---------P~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l----~~L~~~ 151 (285)
T TIGR00674 85 LTKFAEDVGADGFLVVT---------PYYNKPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETV----KRLAEE 151 (285)
T ss_pred HHHHHHHcCCCEEEEcC---------CcCCCCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHH----HHHHcC
Confidence 57888999999998752 334445679999999999999999999999994 4666676655 466654
Q ss_pred hCCCEEEeCCC
Q 026125 183 GGMDAIKLEGG 193 (243)
Q Consensus 183 aGAdaVKLEGg 193 (243)
....+||-..+
T Consensus 152 ~~v~giK~s~~ 162 (285)
T TIGR00674 152 PNIVAIKEATG 162 (285)
T ss_pred CCEEEEEeCCC
Confidence 56778886555
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.047 Score=49.14 Aligned_cols=78 Identities=19% Similarity=0.251 Sum_probs=59.9
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~ke 182 (243)
.|+.++++|+|.+++. .|...+.+-++++.|.+.|+.+++.|+++-|.|. .++..+++.. .++.+.
T Consensus 87 ~a~~a~~~G~d~v~~~---------~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~----~~L~~~ 153 (284)
T cd00950 87 LTKRAEKAGADAALVV---------TPYYNKPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETV----LRLAEH 153 (284)
T ss_pred HHHHHHHcCCCEEEEc---------ccccCCCCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHH----HHHhcC
Confidence 4688899999999876 2334455679999999999999999999999995 4555676655 456655
Q ss_pred hCCCEEEeCCCC
Q 026125 183 GGMDAIKLEGGS 194 (243)
Q Consensus 183 aGAdaVKLEGg~ 194 (243)
-.+.+||...+.
T Consensus 154 p~v~giK~s~~~ 165 (284)
T cd00950 154 PNIVGIKEATGD 165 (284)
T ss_pred CCEEEEEECCCC
Confidence 678899976653
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=96.03 E-value=0.082 Score=46.92 Aligned_cols=97 Identities=21% Similarity=0.274 Sum_probs=62.0
Q ss_pred CCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 78 ~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
+.|+.+|-+..+..-.+.|--+.++..|..++++|+|+|.+ .+.||-.-..=.-.+ +...+.+++. +.| ||
T Consensus 78 p~~l~~li~~i~~~~~l~MADist~ee~~~A~~~G~D~I~T------TLsGYT~~t~~~~pD-~~lv~~l~~~-~~p-vI 148 (192)
T PF04131_consen 78 PETLEELIREIKEKYQLVMADISTLEEAINAAELGFDIIGT------TLSGYTPYTKGDGPD-FELVRELVQA-DVP-VI 148 (192)
T ss_dssp SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHTT-SEEE-------TTTTSSTTSTTSSHH-HHHHHHHHHT-TSE-EE
T ss_pred CcCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHcCCCEEEc------ccccCCCCCCCCCCC-HHHHHHHHhC-CCc-Ee
Confidence 37888876654444499999999999999999999999854 355664332222222 4444566653 444 78
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
+. |.| .+||++ .+.+ +.||++|-+ |+
T Consensus 149 aE---Gri-~tpe~a----~~al-~~GA~aVVV-Gs 174 (192)
T PF04131_consen 149 AE---GRI-HTPEQA----AKAL-ELGAHAVVV-GS 174 (192)
T ss_dssp EE---SS---SHHHH----HHHH-HTT-SEEEE--H
T ss_pred ec---CCC-CCHHHH----HHHH-hcCCeEEEE-Cc
Confidence 87 466 489999 6788 599999988 55
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.059 Score=49.00 Aligned_cols=79 Identities=15% Similarity=0.190 Sum_probs=59.7
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCC-CCCcCCHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPF-GTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~ 180 (243)
-.|+.++++|+|.+++--. .....+-++++.|.+.|++++ +.|+++-|.|. .++..+++.. .+|.
T Consensus 87 ~~a~~a~~~Gad~v~~~~P---------~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~----~~L~ 153 (288)
T cd00954 87 ELAKHAEELGYDAISAITP---------FYYKFSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQF----LELF 153 (288)
T ss_pred HHHHHHHHcCCCEEEEeCC---------CCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHH----HHHh
Confidence 3567889999999986522 223356799999999999999 79999999994 5665677655 4555
Q ss_pred HHhCCCEEEeCCCC
Q 026125 181 KEGGMDAIKLEGGS 194 (243)
Q Consensus 181 keaGAdaVKLEGg~ 194 (243)
+--...+||-+.+.
T Consensus 154 ~~pnivgiK~s~~d 167 (288)
T cd00954 154 EIPNVIGVKFTATD 167 (288)
T ss_pred cCCCEEEEEeCCCC
Confidence 43467899998774
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.082 Score=52.57 Aligned_cols=101 Identities=16% Similarity=0.164 Sum_probs=63.9
Q ss_pred HHHHHhhhC--CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCc-cCCHHHHHHHHHHHHcccCCCcEEe
Q 026125 82 THLRQKHKN--GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTL-PITLEEMLVHCRAVARGAKRPLLVG 158 (243)
Q Consensus 82 ~~Lr~~kk~--g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~-~vTldeMi~h~~aV~Rga~~~fvVa 158 (243)
..++..++. +-+|.+=++-+...|+.+.++|+|+|.||-.-|........+. ......-++.+..+++..+.| ||+
T Consensus 278 ~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vp-VIa 356 (505)
T PLN02274 278 EMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVP-VIA 356 (505)
T ss_pred HHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCe-EEE
Confidence 445554433 3455555899999999999999999998754443333332221 111222355567777766666 889
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
|=. + .++.++ .+.+ +.||++|.+ |+
T Consensus 357 dGG---I-~~~~di----~kAl-a~GA~~V~v-Gs 381 (505)
T PLN02274 357 DGG---I-SNSGHI----VKAL-TLGASTVMM-GS 381 (505)
T ss_pred eCC---C-CCHHHH----HHHH-HcCCCEEEE-ch
Confidence 854 4 366777 4667 489999988 44
|
|
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.077 Score=48.13 Aligned_cols=78 Identities=21% Similarity=0.225 Sum_probs=58.5
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~ke 182 (243)
.|+.++++|+|.+++- -|.....+-++++.|.++|++.++.|+++-|.|. .++..+++.. .++.+-
T Consensus 88 ~a~~a~~~G~d~v~~~---------pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~----~~L~~~ 154 (292)
T PRK03170 88 LTKFAEKAGADGALVV---------TPYYNKPTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETV----ARLAEH 154 (292)
T ss_pred HHHHHHHcCCCEEEEC---------CCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHH----HHHHcC
Confidence 4688899999999875 2333445679999999999999999999999994 4555666544 455543
Q ss_pred hCCCEEEeCCCC
Q 026125 183 GGMDAIKLEGGS 194 (243)
Q Consensus 183 aGAdaVKLEGg~ 194 (243)
....++|-..+.
T Consensus 155 p~v~giK~s~~d 166 (292)
T PRK03170 155 PNIVGIKEATGD 166 (292)
T ss_pred CCEEEEEECCCC
Confidence 568899976663
|
|
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.12 Score=49.40 Aligned_cols=124 Identities=22% Similarity=0.348 Sum_probs=76.6
Q ss_pred CCCCHHHHHHh---hhCC--CcEEE----EecC--CHHH-----HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHH
Q 026125 77 QRVTLTHLRQK---HKNG--EPITM----VTAY--DYPS-----AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEM 140 (243)
Q Consensus 77 ~~~tv~~Lr~~---kk~g--~~Itm----lTAY--D~~s-----A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeM 140 (243)
..+|+.++... ..++ .++++ ...| +... +++..++|+|++-+-|+. .++
T Consensus 76 ~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~---------------~~~ 140 (332)
T PLN02424 76 LPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRMLKEGGMDAVKLEGGS---------------PSR 140 (332)
T ss_pred CCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCc---------------HHH
Confidence 35788776542 2455 45444 1235 3333 356688999999655442 356
Q ss_pred HHHHHHHHcccCCCcE----E---eeCCCCCCcC---C---HHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHc
Q 026125 141 LVHCRAVARGAKRPLL----V---GDLPFGTYES---S---TNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA 207 (243)
Q Consensus 141 i~h~~aV~Rga~~~fv----V---aDmPfgsY~~---s---~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~ 207 (243)
+...+++. ....|++ + .+.-+|+|.. + .++.++.|.. ++++||.+|-||+-.. .+++.|+++
T Consensus 141 ~~~I~~l~-~~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~a-le~AGAf~ivLE~Vp~---~la~~It~~ 215 (332)
T PLN02424 141 VTAAKAIV-EAGIAVMGHVGLTPQAISVLGGFRPQGRTAESAVKVVETALA-LQEAGCFAVVLECVPA---PVAAAITSA 215 (332)
T ss_pred HHHHHHHH-HcCCCEEEeecccceeehhhcCccccCCCHHHHHHHHHHHHH-HHHcCCcEEEEcCCcH---HHHHHHHHh
Confidence 66677776 4455644 1 4455677632 2 3355666654 4579999999999864 246667654
Q ss_pred -CCceeeccCCcccc
Q 026125 208 -GIAVMGHVGLTPQA 221 (243)
Q Consensus 208 -GIPV~GHiGLtPQ~ 221 (243)
.||++| ||=-|..
T Consensus 216 l~IPtIG-IGAG~~c 229 (332)
T PLN02424 216 LQIPTIG-IGAGPFC 229 (332)
T ss_pred CCCCEEe-ecCCCCC
Confidence 799999 7765543
|
|
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.088 Score=48.31 Aligned_cols=78 Identities=18% Similarity=0.179 Sum_probs=60.0
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCC-CCCcCCHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPF-GTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~k 181 (243)
-|+.++++|+|.+++.= |--.+.+-++++.|.++|++++ +.|+++=|.|. -++..+++.. .|+.+
T Consensus 87 ~a~~A~~~Gad~v~v~p---------P~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l----~~L~~ 153 (294)
T TIGR02313 87 LTKFAEEAGADAAMVIV---------PYYNKPNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTM----ARLRK 153 (294)
T ss_pred HHHHHHHcCCCEEEEcC---------ccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHH----HHHHh
Confidence 45888999999998763 3334457799999999999999 89999999995 3565666655 45654
Q ss_pred H-hCCCEEEeCCCC
Q 026125 182 E-GGMDAIKLEGGS 194 (243)
Q Consensus 182 e-aGAdaVKLEGg~ 194 (243)
+ -...+||-..|.
T Consensus 154 ~~pnv~giK~ss~d 167 (294)
T TIGR02313 154 DCPNIVGAKESNKD 167 (294)
T ss_pred hCCCEEEEEeCCCC
Confidence 3 578999998774
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.47 Score=42.64 Aligned_cols=96 Identities=22% Similarity=0.209 Sum_probs=57.9
Q ss_pred CCcEEE-EecCCH----HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCC
Q 026125 91 GEPITM-VTAYDY----PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTY 165 (243)
Q Consensus 91 g~~Itm-lTAYD~----~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY 165 (243)
+.|+.. +...|. ..|+.++++|+|+|=+--|--....|. ...-..+.+.+-+++|++.++.| |.+-++. +
T Consensus 98 ~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~--~~~~~~~~~~eiv~~vr~~~~~p-v~vKl~~--~ 172 (289)
T cd02810 98 GQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGR--QLGQDPEAVANLLKAVKAAVDIP-LLVKLSP--Y 172 (289)
T ss_pred CCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCc--ccccCHHHHHHHHHHHHHccCCC-EEEEeCC--C
Confidence 455443 555544 347788888999994332211111111 12234566667778888877666 5666664 2
Q ss_pred cCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 166 ESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 166 ~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
.+.++..+.|..+. ++|||+|.+-++
T Consensus 173 -~~~~~~~~~a~~l~-~~Gad~i~~~~~ 198 (289)
T cd02810 173 -FDLEDIVELAKAAE-RAGADGLTAINT 198 (289)
T ss_pred -CCHHHHHHHHHHHH-HcCCCEEEEEcc
Confidence 35677777766555 799999998654
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.095 Score=48.03 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=59.2
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCC-CCCcCCHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPF-GTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~k 181 (243)
-|+.++++|+|.+++. -|.-.+.+-++++.|.+.|++.+ +.|+++=|.|. .++..+++.. .++.+
T Consensus 88 la~~a~~~Gad~v~v~---------~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i----~~L~~ 154 (290)
T TIGR00683 88 LGKYATELGYDCLSAV---------TPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQF----GELYK 154 (290)
T ss_pred HHHHHHHhCCCEEEEe---------CCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHH----HHHhc
Confidence 4578899999999874 23344567899999999999887 79999999994 4565666655 45554
Q ss_pred HhCCCEEEeCCCC
Q 026125 182 EGGMDAIKLEGGS 194 (243)
Q Consensus 182 eaGAdaVKLEGg~ 194 (243)
.-...+||-..|.
T Consensus 155 ~pnv~giK~s~~d 167 (290)
T TIGR00683 155 NPKVLGVKFTAGD 167 (290)
T ss_pred CCCEEEEEeCCCC
Confidence 4568899988774
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.22 Score=45.77 Aligned_cols=93 Identities=23% Similarity=0.222 Sum_probs=64.4
Q ss_pred CHHHHHHhhhCCCcEEE-EecCCHHHHHHHHHcCCCEEEe-CcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 80 TLTHLRQKHKNGEPITM-VTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 80 tv~~Lr~~kk~g~~Itm-lTAYD~~sA~iae~AGiDiILV-GDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
|+..-+.+.++| -.++ +++-|...|+.++++|+|++.. |.-+|.- .|..+ .|.+. .|++..+.| |+
T Consensus 112 tv~aa~~L~~~G-f~vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIGsg-~Gi~~------~~~I~---~I~e~~~vp-VI 179 (248)
T cd04728 112 TLKAAEILVKEG-FTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSG-QGLLN------PYNLR---IIIERADVP-VI 179 (248)
T ss_pred HHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCC-CCCCC------HHHHH---HHHHhCCCc-EE
Confidence 566666666555 5566 7889999999999999999964 4444422 33322 55554 555555555 78
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
+| |+. .+++++ .+.+ |.|||+|-+-.+
T Consensus 180 ~e---gGI-~tpeda----~~Am-elGAdgVlV~SA 206 (248)
T cd04728 180 VD---AGI-GTPSDA----AQAM-ELGADAVLLNTA 206 (248)
T ss_pred Ee---CCC-CCHHHH----HHHH-HcCCCEEEEChH
Confidence 88 566 488998 5677 699999988655
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.16 Score=46.58 Aligned_cols=97 Identities=18% Similarity=0.168 Sum_probs=63.7
Q ss_pred CCHHHHHHhhhC-CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 79 VTLTHLRQKHKN-GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 79 ~tv~~Lr~~kk~-g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
.....+++.++. +.|+++=.+-+...|+.++++|+|.|.|+..-|.. .+..+.+++-+..-.+++.. +.| |+
T Consensus 159 ~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~I~v~~~gG~~----~~~g~~~~~~l~~i~~~~~~--~ip-vi 231 (299)
T cd02809 159 LTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGADGIVVSNHGGRQ----LDGAPATIDALPEIVAAVGG--RIE-VL 231 (299)
T ss_pred CCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCEEEEcCCCCCC----CCCCcCHHHHHHHHHHHhcC--CCe-EE
Confidence 345666666554 57888888888999999999999999876544432 13445556554443333321 234 77
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
+|= +. .+.+++ .+.+ ..|||+|.+-
T Consensus 232 a~G---GI-~~~~d~----~kal-~lGAd~V~ig 256 (299)
T cd02809 232 LDG---GI-RRGTDV----LKAL-ALGADAVLIG 256 (299)
T ss_pred EeC---CC-CCHHHH----HHHH-HcCCCEEEEc
Confidence 774 44 367777 4566 4899999983
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >PRK15063 isocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.17 Score=49.85 Aligned_cols=114 Identities=23% Similarity=0.205 Sum_probs=79.1
Q ss_pred HHHHHHHcCCCEEEeCcchhh-hhccCCCC-ccCCHHHHHHHHHHHHcccC---CCcEE---eeC---------------
Q 026125 104 SAVHLDSAGIDICLVGDSAAM-VVHGHDTT-LPITLEEMLVHCRAVARGAK---RPLLV---GDL--------------- 160 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgm-v~lG~~dT-~~vTldeMi~h~~aV~Rga~---~~fvV---aDm--------------- 160 (243)
..+..+++|+-.|-+-|.+.. --.|+-+. ..|+.+||+...++++.+.+ .+|+| .|-
T Consensus 166 ~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~vIiARTDA~aa~li~s~~d~rD~ 245 (428)
T PRK15063 166 LMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTLVIARTDAEAADLLTSDVDERDR 245 (428)
T ss_pred HHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeEEEEECCcccccccccccccccc
Confidence 367788999999999999752 33466655 48999999999999987653 23444 354
Q ss_pred CCC----------CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHc---CCc--eeeccCCcccc
Q 026125 161 PFG----------TYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA---GIA--VMGHVGLTPQA 221 (243)
Q Consensus 161 Pfg----------sY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~---GIP--V~GHiGLtPQ~ 221 (243)
||. -|....++|++-+.... + |||+|.+|.+...... ++.++++ -+| ++.. |.+|..
T Consensus 246 ~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa-~-GAD~iw~Et~~~d~ee-~~~fa~~v~~~~P~~~lay-n~sPsf 317 (428)
T PRK15063 246 PFITGERTAEGFYRVKAGIEQAIARGLAYA-P-YADLIWCETSTPDLEE-ARRFAEAIHAKFPGKLLAY-NCSPSF 317 (428)
T ss_pred ccccCCCccccccccccCHHHHHHHHHHHh-c-CCCEEEeCCCCCCHHH-HHHHHHhhcccCccceeec-CCCCCc
Confidence 121 11235899999998766 5 9999999977554444 5666653 126 5555 888864
|
|
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.074 Score=49.34 Aligned_cols=100 Identities=22% Similarity=0.261 Sum_probs=61.4
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcc---------hhhhhccCCCCccCCHHHHHHHHHHHHccc
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDS---------AAMVVHGHDTTLPITLEEMLVHCRAVARGA 151 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDS---------lgmv~lG~~dT~~vTldeMi~h~~aV~Rga 151 (243)
+..|+++.++++||+-..+=.-.+|+.+|+.|+|+|++-.| .-..+|-|-|...+++|. .+.|.-.+
T Consensus 4 l~~l~~~i~~~~pIig~gaGtGlsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em----~~eiLp~v 79 (268)
T PF09370_consen 4 LDRLRAQIKAGKPIIGAGAGTGLSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEM----AREILPVV 79 (268)
T ss_dssp HHHHHHHHHTT--EEEEEESSHHHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHH----HHHHGGG-
T ss_pred HHHHHHHHhCCCceEEEeeccchhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHH----HHhhhhhc
Confidence 56799999999999999999999999999999999987432 223455666666666643 35555555
Q ss_pred CCCcEEeeC-CCCCCcCCHHHHHHHHHHHHHHhCCCEEE
Q 026125 152 KRPLLVGDL-PFGTYESSTNQAVDTAVRILKEGGMDAIK 189 (243)
Q Consensus 152 ~~~fvVaDm-PfgsY~~s~e~Av~nA~Rl~keaGAdaVK 189 (243)
++..|++.+ ..--| .+.++- .+-+++.|..+|.
T Consensus 80 ~~tPViaGv~atDP~-~~~~~f----l~~lk~~Gf~GV~ 113 (268)
T PF09370_consen 80 KDTPVIAGVCATDPF-RDMDRF----LDELKELGFSGVQ 113 (268)
T ss_dssp SSS-EEEEE-TT-TT---HHHH----HHHHHHHT-SEEE
T ss_pred cCCCEEEEecCcCCC-CcHHHH----HHHHHHhCCceEE
Confidence 544466433 12122 244444 3445677888875
|
Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C. |
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.28 Score=45.22 Aligned_cols=93 Identities=24% Similarity=0.244 Sum_probs=63.6
Q ss_pred CHHHHHHhhhCCCcEEE-EecCCHHHHHHHHHcCCCEEEe-CcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 80 TLTHLRQKHKNGEPITM-VTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 80 tv~~Lr~~kk~g~~Itm-lTAYD~~sA~iae~AGiDiILV-GDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
|+..-+.+.++| -.++ +++-|...|+.++++|+|+|.. |.-+|.- .|..+ .|++ +.|++..+.| |+
T Consensus 112 tv~aa~~L~~~G-f~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGsg-~gi~~------~~~i---~~i~e~~~vp-VI 179 (250)
T PRK00208 112 TLKAAEILVKEG-FVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGSG-LGLLN------PYNL---RIIIEQADVP-VI 179 (250)
T ss_pred HHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCC-CCCCC------HHHH---HHHHHhcCCe-EE
Confidence 566666665444 5677 8889999999999999999964 3344421 33322 4444 4555544455 77
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
+| ++. .+++++ .+.| |.|||+|-+-.+
T Consensus 180 ve---aGI-~tpeda----~~Am-elGAdgVlV~SA 206 (250)
T PRK00208 180 VD---AGI-GTPSDA----AQAM-ELGADAVLLNTA 206 (250)
T ss_pred Ee---CCC-CCHHHH----HHHH-HcCCCEEEEChH
Confidence 87 566 488998 5667 699999988666
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.28 Score=45.95 Aligned_cols=129 Identities=19% Similarity=0.133 Sum_probs=72.1
Q ss_pred HHHHHhhhCC--CcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCC--CCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 82 THLRQKHKNG--EPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHD--TTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 82 ~~Lr~~kk~g--~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~--dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
..+++.++.. -++.+-++-+...|+.+.++|+|+|.||-+-|....+.. ....-+++ .+..+..+++..+.| |+
T Consensus 124 ~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~-~i~~v~~~~~~~~vp-VI 201 (325)
T cd00381 124 EMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQAT-AVADVAAAARDYGVP-VI 201 (325)
T ss_pred HHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHH-HHHHHHHHHhhcCCc-EE
Confidence 3344444433 344444889999999999999999988533222221111 11112333 344444444444455 67
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC----CchHHHHHHHHHcCCceeeccCCccccccc
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS----PSRITAARGIVEAGIAVMGHVGLTPQAISV 224 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~----~~~~~~i~~L~~~GIPV~GHiGLtPQ~~~~ 224 (243)
+| |+. .++.++ .+.+ +.||++|.+ |.. ++.+. ..+...|-..--|.|.-......
T Consensus 202 A~---GGI-~~~~di----~kAl-a~GA~~Vmi-Gt~fa~t~Es~g--~~~~~~g~~~~~~~g~~s~~~~~ 260 (325)
T cd00381 202 AD---GGI-RTSGDI----VKAL-AAGADAVML-GSLLAGTDESPG--EYIEINGKRYKEYRGMGSLGAMK 260 (325)
T ss_pred ec---CCC-CCHHHH----HHHH-HcCCCEEEe-cchhcccccCCC--cEEEECCeeeeeEecccchhhhh
Confidence 76 566 467777 4566 489999999 221 11110 12335677777777766555444
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PLN02892 isocitrate lyase | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.13 Score=52.07 Aligned_cols=108 Identities=13% Similarity=0.145 Sum_probs=71.1
Q ss_pred HHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhh-----hhccCCCCccCCHHHHHHHHHHH----------
Q 026125 83 HLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAM-----VVHGHDTTLPITLEEMLVHCRAV---------- 147 (243)
Q Consensus 83 ~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgm-----v~lG~~dT~~vTldeMi~h~~aV---------- 147 (243)
-|++..++|.++.-++|.|...|.-..+ |.|.|.|..+.-. +--=+||-..-.++-+-..++.|
T Consensus 69 lL~~~~~~~~~~~t~Galdp~Q~~Qm~k-~l~~iYvSGWq~ss~a~t~~e~~PD~adYP~~tVP~~V~ri~~Aq~~hDr~ 147 (570)
T PLN02892 69 TLKTHQANGTASRTFGALDPVQVAQMAK-HLDTIYVSGWQCSSTATSTNEPGPDLADYPMDTVPNKVEHLFFAQLYHDRK 147 (570)
T ss_pred HHHHhhccCCceeeccCCcHHHHHHHHc-cCceEEechhhhcCccccCCCCCCCcccCccccccHHHHHHHHHHHHHHHH
Confidence 3555556778999999999999998877 9999976553222 22234554444433322222222
Q ss_pred ------------HcccCC----CcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 148 ------------ARGAKR----PLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 148 ------------~Rga~~----~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
+.+.+. ..|++|..- +|+ ++.++++++.+++ ++||.+|+|||..
T Consensus 148 q~~~r~~~~~~~r~~~~~~Dyl~PIiADaEt-GyG-~~~~~~~~vk~~i-eaGAaGIhIEDQ~ 207 (570)
T PLN02892 148 QREARMSMSREERARTPYVDYLKPIIADGDT-GFG-GTTATVKLCKLFV-ERGAAGVHIEDQS 207 (570)
T ss_pred HHHHHhccCHHHhcCCCccccccceeeecCC-CCC-ccHHHHHHHHHHH-HcCCeEEEEECCC
Confidence 113331 257899887 785 5666678888888 6999999999963
|
|
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.14 Score=47.38 Aligned_cols=116 Identities=15% Similarity=0.141 Sum_probs=74.4
Q ss_pred CCCcEEEEec--CCH----HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCC
Q 026125 90 NGEPITMVTA--YDY----PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPF 162 (243)
Q Consensus 90 ~g~~ItmlTA--YD~----~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPf 162 (243)
+|+.-++.++ .+. -.|+.++++|+|.+++-- |.-.+.+-++++.|.++|++++ +.|+++=|.|-
T Consensus 75 ~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~---------P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~ 145 (309)
T cd00952 75 AGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGR---------PMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPE 145 (309)
T ss_pred CCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECC---------CcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCch
Confidence 4444344544 444 346888999999998752 2234457799999999999999 59999999994
Q ss_pred -CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCcee-eccCCcc
Q 026125 163 -GTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVM-GHVGLTP 219 (243)
Q Consensus 163 -gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~-GHiGLtP 219 (243)
.++..+++.. .+|.+--+..+||-.+........++ ..+.++.|+ |+=.+.|
T Consensus 146 ~tg~~l~~~~l----~~L~~~pnivgiKdssd~~~~~~~i~-~~~~~~~v~~g~d~~l~ 199 (309)
T cd00952 146 AFKFDFPRAAW----AELAQIPQVVAAKYLGDIGALLSDLA-AVKGRMRLLPLEDDYYA 199 (309)
T ss_pred hcCCCCCHHHH----HHHhcCCCEEEEEecCChHHHHHHHH-HcCCCeEEeecchhHHH
Confidence 3555566554 45654457899999873222222222 223477776 4444444
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.056 Score=48.89 Aligned_cols=79 Identities=25% Similarity=0.262 Sum_probs=59.8
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCC-CCCCcCCHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP-FGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmP-fgsY~~s~e~Av~nA~Rl~k 181 (243)
-.|+.++++|+|.+++.- |-....|-++++.|.+.|+..++.|+++=|.| ..++..+++.. .++.+
T Consensus 87 ~~a~~a~~~Gad~v~v~~---------P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l----~~L~~ 153 (289)
T PF00701_consen 87 ELARHAQDAGADAVLVIP---------PYYFKPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETL----ARLAK 153 (289)
T ss_dssp HHHHHHHHTT-SEEEEEE---------STSSSCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHH----HHHHT
T ss_pred HHHHHHhhcCceEEEEec---------cccccchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHH----HHHhc
Confidence 357889999999887652 33446789999999999999999999999999 44555566654 55665
Q ss_pred HhCCCEEEeCCCC
Q 026125 182 EGGMDAIKLEGGS 194 (243)
Q Consensus 182 eaGAdaVKLEGg~ 194 (243)
--...++|.+.+.
T Consensus 154 ~~nv~giK~s~~~ 166 (289)
T PF00701_consen 154 IPNVVGIKDSSGD 166 (289)
T ss_dssp STTEEEEEESSSB
T ss_pred CCcEEEEEcCchh
Confidence 4568899987774
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.24 Score=45.15 Aligned_cols=90 Identities=14% Similarity=0.154 Sum_probs=63.4
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~ke 182 (243)
.|+.++++|+|.+++--. .-...+-++++.|-+.|++.+ |+++-|.|. .++..+++.. .++.+.
T Consensus 88 ~a~~a~~~Gadav~~~~P---------~y~~~~~~~i~~~f~~va~~~--pi~lYn~P~~tg~~l~~~~l----~~l~~~ 152 (280)
T PLN02417 88 ATEQGFAVGMHAALHINP---------YYGKTSQEGLIKHFETVLDMG--PTIIYNVPGRTGQDIPPEVI----FKIAQH 152 (280)
T ss_pred HHHHHHHcCCCEEEEcCC---------ccCCCCHHHHHHHHHHHHhhC--CEEEEEChhHhCcCCCHHHH----HHHhcC
Confidence 356788999999887522 233456799999999999975 988999994 4566676655 455554
Q ss_pred hCCCEEEeCCCCCchHHHHHHHHHcCCcee
Q 026125 183 GGMDAIKLEGGSPSRITAARGIVEAGIAVM 212 (243)
Q Consensus 183 aGAdaVKLEGg~~~~~~~i~~L~~~GIPV~ 212 (243)
-...+||-..|. .. +..+...++.|+
T Consensus 153 pni~giKdss~~---~~-~~~~~~~~~~v~ 178 (280)
T PLN02417 153 PNFAGVKECTGN---DR-VKQYTEKGILLW 178 (280)
T ss_pred CCEEEEEeCCCc---HH-HHHHhcCCeEEE
Confidence 568899987775 23 233555677765
|
|
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.31 Score=46.19 Aligned_cols=90 Identities=18% Similarity=0.138 Sum_probs=54.7
Q ss_pred cEEEE-ecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHH
Q 026125 93 PITMV-TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQ 171 (243)
Q Consensus 93 ~Itml-TAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~ 171 (243)
+++|. ++=++..|+.+.++|+|++.||-.-|....--..+..-.-+-.+...+.+++..+.| |++|= +. .++.+
T Consensus 141 ~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ip-VIAdG---GI-~~~~D 215 (326)
T PRK05458 141 TFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKP-IIADG---GI-RTHGD 215 (326)
T ss_pred CeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCC-EEEeC---CC-CCHHH
Confidence 55666 688999999999999999999855543311100000000000222334444445555 78884 55 47788
Q ss_pred HHHHHHHHHHHhCCCEEEeCC
Q 026125 172 AVDTAVRILKEGGMDAIKLEG 192 (243)
Q Consensus 172 Av~nA~Rl~keaGAdaVKLEG 192 (243)
+ .+.+ +.||++|-+-+
T Consensus 216 i----~KaL-a~GA~aV~vG~ 231 (326)
T PRK05458 216 I----AKSI-RFGATMVMIGS 231 (326)
T ss_pred H----HHHH-HhCCCEEEech
Confidence 7 4667 47999998843
|
|
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.14 Score=46.62 Aligned_cols=78 Identities=19% Similarity=0.206 Sum_probs=59.3
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~ke 182 (243)
.|+.++++|+|.+++-= |.-...+-++++.|.+.|+++++.|+++-|.|. .++..+++.. .+|.+.
T Consensus 91 ~a~~a~~~Gad~v~v~~---------P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l----~~L~~~ 157 (293)
T PRK04147 91 LAKYATELGYDAISAVT---------PFYYPFSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQF----NELFTL 157 (293)
T ss_pred HHHHHHHcCCCEEEEeC---------CcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHH----HHHhcC
Confidence 46888999999997652 222344679999999999999999999999995 4565676655 355544
Q ss_pred hCCCEEEeCCCC
Q 026125 183 GGMDAIKLEGGS 194 (243)
Q Consensus 183 aGAdaVKLEGg~ 194 (243)
-...+||.+.+.
T Consensus 158 pnvvgiK~s~~d 169 (293)
T PRK04147 158 PKVIGVKQTAGD 169 (293)
T ss_pred CCEEEEEeCCCC
Confidence 578999998774
|
|
| >TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.24 Score=45.73 Aligned_cols=122 Identities=17% Similarity=0.210 Sum_probs=73.4
Q ss_pred CCCHHHHHH---hhhC--CCcEEE----EecC-CHHH-----HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHH
Q 026125 78 RVTLTHLRQ---KHKN--GEPITM----VTAY-DYPS-----AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLV 142 (243)
Q Consensus 78 ~~tv~~Lr~---~kk~--g~~Itm----lTAY-D~~s-----A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~ 142 (243)
.+|+.++.. ...+ +.++++ .+.| |... .++.+++|+|.+-+-|+ ++++.
T Consensus 57 ~vtldem~~h~~aV~rg~~~~~vv~DmPf~sy~~~e~a~~na~rl~~eaGa~aVkiEgg----------------~~~~~ 120 (263)
T TIGR00222 57 PVTVADMIYHTAAVKRGAPNCLIVTDLPFMSYATPEQALKNAARVMQETGANAVKLEGG----------------EWLVE 120 (263)
T ss_pred CcCHHHHHHHHHHHHhhCCCceEEeCCCcCCCCCHHHHHHHHHHHHHHhCCeEEEEcCc----------------HhHHH
Confidence 577766543 1223 355555 2456 4333 36788899999977764 44555
Q ss_pred HHHHHHcccCCCcE---------E-eeCCCCCCcCC---HHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHH-cC
Q 026125 143 HCRAVARGAKRPLL---------V-GDLPFGTYESS---TNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE-AG 208 (243)
Q Consensus 143 h~~aV~Rga~~~fv---------V-aDmPfgsY~~s---~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~-~G 208 (243)
..+++.+ ...|++ + .|-.|.--+.+ .+++++-|..+. ++||+++.+|+-.. ++++.|++ -.
T Consensus 121 ~i~~l~~-~gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e-~AGA~~ivlE~vp~---~~a~~It~~l~ 195 (263)
T TIGR00222 121 TVQMLTE-RGVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLEDALALE-EAGAQLLVLECVPV---ELAAKITEALA 195 (263)
T ss_pred HHHHHHH-CCCCEEEecCCCceeEeecCCeeecCCCHHHHHHHHHHHHHHH-HcCCCEEEEcCCcH---HHHHHHHHhCC
Confidence 5566554 334544 2 22223211223 346777776555 79999999999863 44666754 47
Q ss_pred CceeeccCCcccc
Q 026125 209 IAVMGHVGLTPQA 221 (243)
Q Consensus 209 IPV~GHiGLtPQ~ 221 (243)
||+.| ||=-|..
T Consensus 196 iP~iG-IGaG~~~ 207 (263)
T TIGR00222 196 IPVIG-IGAGNVC 207 (263)
T ss_pred CCEEe-eccCCCC
Confidence 99999 7766543
|
Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. |
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.5 Score=46.12 Aligned_cols=88 Identities=14% Similarity=0.145 Sum_probs=58.8
Q ss_pred CcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCC--ccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCH
Q 026125 92 EPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTT--LPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESST 169 (243)
Q Consensus 92 ~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT--~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~ 169 (243)
-+|.+-.+-++..|+.+.++|+|+|.||-.-|..+-+..-+ +.-+++. +..++.+++..+.| ||+|= ++ .++
T Consensus 195 ~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~lta-i~~v~~~~~~~~vp-VIAdG---GI-~~~ 268 (404)
T PRK06843 195 LDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITA-ICDVYEVCKNTNIC-IIADG---GI-RFS 268 (404)
T ss_pred CcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHH-HHHHHHHHhhcCCe-EEEeC---CC-CCH
Confidence 45667799999999999999999999886554432222111 1113443 44455566666666 78984 55 467
Q ss_pred HHHHHHHHHHHHHhCCCEEEe
Q 026125 170 NQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 170 e~Av~nA~Rl~keaGAdaVKL 190 (243)
+++ .+.+ +.||++|.+
T Consensus 269 ~Di----~KAL-alGA~aVmv 284 (404)
T PRK06843 269 GDV----VKAI-AAGADSVMI 284 (404)
T ss_pred HHH----HHHH-HcCCCEEEE
Confidence 888 4667 589999988
|
|
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=94.68 E-value=1.2 Score=41.21 Aligned_cols=126 Identities=18% Similarity=0.273 Sum_probs=70.3
Q ss_pred hCCCcE-EEEecCCH----HHHHHHHHcCCCEE-E-eCcchhhhhccC-CCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 89 KNGEPI-TMVTAYDY----PSAVHLDSAGIDIC-L-VGDSAAMVVHGH-DTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 89 k~g~~I-tmlTAYD~----~sA~iae~AGiDiI-L-VGDSlgmv~lG~-~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
..+.|+ +.+...|. -.|+.++++|+|.| + .|-....+.-.+ -+...-..+-+..-+++|++.++.|+.+ -+
T Consensus 60 ~~~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~v-Ki 138 (319)
T TIGR00737 60 EDETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTV-KI 138 (319)
T ss_pred CccceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEE-EE
Confidence 445565 67777776 34566778999999 4 453321111111 1111224566777788898888877544 33
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC-------CchHHHHHHHHH-cCCceeeccCC
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-------PSRITAARGIVE-AGIAVMGHVGL 217 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~-------~~~~~~i~~L~~-~GIPV~GHiGL 217 (243)
.- ++..+..+.++.+.+ ++++|+|++-+-+.. ....+.++.+.+ .+|||++==|+
T Consensus 139 r~-g~~~~~~~~~~~a~~-l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI 201 (319)
T TIGR00737 139 RI-GWDDAHINAVEAARI-AEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDI 201 (319)
T ss_pred Ec-ccCCCcchHHHHHHH-HHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCC
Confidence 21 222222344555544 457999999875431 112334555555 36898874443
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.66 Score=47.35 Aligned_cols=119 Identities=19% Similarity=0.255 Sum_probs=82.2
Q ss_pred HHHHHHhhhCCCcEEEEe-------cCCHH------HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHH
Q 026125 81 LTHLRQKHKNGEPITMVT-------AYDYP------SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAV 147 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlT-------AYD~~------sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV 147 (243)
+..||+.. .+.++.|+. -.-|+ +.+.+.+.|+|++-|.|++ -.++-|..+.+++
T Consensus 66 l~~~r~~~-pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~l------------nd~~n~~~~i~~~ 132 (596)
T PRK14042 66 LRQLRQAL-PNTQLSMLLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFDAL------------NDARNLKVAIDAI 132 (596)
T ss_pred HHHHHHhC-CCCceEEEeccccccccccCChHHHHHHHHHHHHcCCCEEEEcccC------------cchHHHHHHHHHH
Confidence 56666664 568888887 23344 7888889999999999988 3567788889999
Q ss_pred HcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc-CCceeecc
Q 026125 148 ARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGHV 215 (243)
Q Consensus 148 ~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~-GIPV~GHi 215 (243)
++.-.. +.+-+=| +|+--+++..++.|.++. +.|||.|.|-|-.. .+..++++|.++ +|||--|.
T Consensus 133 k~~G~~--~~~~i~yt~sp~~t~e~~~~~ak~l~-~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~ipi~~H~ 204 (596)
T PRK14042 133 KSHKKH--AQGAICYTTSPVHTLDNFLELGKKLA-EMGCDSIAIKDMAGLLTPTVTVELYAGLKQATGLPVHLHS 204 (596)
T ss_pred HHcCCE--EEEEEEecCCCCCCHHHHHHHHHHHH-HcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcCCEEEEEe
Confidence 874332 2222111 133347888888887766 69999999998743 234556666654 68876663
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.53 Score=38.69 Aligned_cols=89 Identities=16% Similarity=0.163 Sum_probs=55.2
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC-CCcCCHHHHHHHHHHHHHHh
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG-TYESSTNQAVDTAVRILKEG 183 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg-sY~~s~e~Av~nA~Rl~kea 183 (243)
++.+.+.|+|.|.+.- +++..+.....+.+.+ +++-.... ++ ...+++++.+.+.. +.
T Consensus 19 ~~~~~~~gv~gi~~~g------------------~~i~~~~~~~~~~~~~-v~~~v~~~~~~-~~~~~~~~~a~~a~-~~ 77 (201)
T cd00945 19 CDEAIEYGFAAVCVNP------------------GYVRLAADALAGSDVP-VIVVVGFPTGL-TTTEVKVAEVEEAI-DL 77 (201)
T ss_pred HHHHHHhCCcEEEECH------------------HHHHHHHHHhCCCCCe-EEEEecCCCCC-CcHHHHHHHHHHHH-Hc
Confidence 3455668999987762 5566555444442344 44333332 22 34788988887776 68
Q ss_pred CCCEEEeCCCC--------CchHHHHHHHHHc---CCceeec
Q 026125 184 GMDAIKLEGGS--------PSRITAARGIVEA---GIAVMGH 214 (243)
Q Consensus 184 GAdaVKLEGg~--------~~~~~~i~~L~~~---GIPV~GH 214 (243)
|||+|.+.... +.....++.+.++ ++||+--
T Consensus 78 Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy 119 (201)
T cd00945 78 GADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVI 119 (201)
T ss_pred CCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEE
Confidence 99999986332 1223445677776 9999854
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.54 Score=42.69 Aligned_cols=115 Identities=20% Similarity=0.165 Sum_probs=67.4
Q ss_pred CcEEEEecCCH------HHHHHHHHcCCCEEEeCcchhh-hhcc-------CCC-CccCCHHHHHHHHHHHHcc-cCCCc
Q 026125 92 EPITMVTAYDY------PSAVHLDSAGIDICLVGDSAAM-VVHG-------HDT-TLPITLEEMLVHCRAVARG-AKRPL 155 (243)
Q Consensus 92 ~~ItmlTAYD~------~sA~iae~AGiDiILVGDSlgm-v~lG-------~~d-T~~vTldeMi~h~~aV~Rg-a~~~f 155 (243)
-.|.-+|+=|. ..++..+++|+|+|=+|-..+- +.-| ... ...+|+++.+..+++|++- .+.|+
T Consensus 11 ~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~pl 90 (256)
T TIGR00262 11 AFIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPI 90 (256)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCE
Confidence 34666677542 2256678899999976632210 0000 000 3467899999999999865 55663
Q ss_pred EEeeCCCCCCcCCH--HHHHHHHHHHHHHhCCCEEEeCCCC-CchHHHHHHHHHcCCcee
Q 026125 156 LVGDLPFGTYESST--NQAVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVM 212 (243)
Q Consensus 156 vVaDmPfgsY~~s~--e~Av~nA~Rl~keaGAdaVKLEGg~-~~~~~~i~~L~~~GIPV~ 212 (243)
+ .++| .|+ .-.+++-.+.++++|+++|-+-|-. ++...+++++.+.|+..+
T Consensus 91 -v----~m~Y-~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i 144 (256)
T TIGR00262 91 -G----LLTY-YNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPI 144 (256)
T ss_pred -E----EEEe-ccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEE
Confidence 2 3355 355 1122222445568999998887754 234455667777786543
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.36 Score=44.64 Aligned_cols=119 Identities=18% Similarity=0.279 Sum_probs=81.1
Q ss_pred hCCCcEEEE--ecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCC--cEEeeCCCC-
Q 026125 89 KNGEPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRP--LLVGDLPFG- 163 (243)
Q Consensus 89 k~g~~Itml--TAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~--fvVaDmPfg- 163 (243)
+..-|+++= -+.|+.....+=++|++.+..-+|- .+.+|.+..++.|++-+... .+=+|....
T Consensus 72 ~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~------------~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG 139 (281)
T PRK06806 72 QAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGSH------------LPLEENIQKTKEIVELAKQYGATVEAEIGRVG 139 (281)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCC------------CCHHHHHHHHHHHHHHHHHcCCeEEEEeeeEC
Confidence 344565543 5678888888889999999887663 47899999999887744321 122332221
Q ss_pred -----------CCcCCHHHHHHHHHHHHHHhCCCEEEe---------CCCCCchHHHHHHHHHc-CCceeecc--CCccc
Q 026125 164 -----------TYESSTNQAVDTAVRILKEGGMDAIKL---------EGGSPSRITAARGIVEA-GIAVMGHV--GLTPQ 220 (243)
Q Consensus 164 -----------sY~~s~e~Av~nA~Rl~keaGAdaVKL---------EGg~~~~~~~i~~L~~~-GIPV~GHi--GLtPQ 220 (243)
+| .+++++ .+++++.|+|.+=+ .+....-.+.++.|.+. +||++.|= |+++.
T Consensus 140 ~~d~~~~~~g~s~-t~~eea----~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e 214 (281)
T PRK06806 140 GSEDGSEDIEMLL-TSTTEA----KRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPE 214 (281)
T ss_pred CccCCccccccee-CCHHHH----HHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHH
Confidence 36 588888 56777789999888 22222334556667654 79999998 89987
Q ss_pred cccc
Q 026125 221 AISV 224 (243)
Q Consensus 221 ~~~~ 224 (243)
....
T Consensus 215 ~~~~ 218 (281)
T PRK06806 215 DFKK 218 (281)
T ss_pred HHHH
Confidence 7643
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.62 Score=45.85 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=58.5
Q ss_pred CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCC-CccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCH
Q 026125 91 GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDT-TLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESST 169 (243)
Q Consensus 91 g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~d-T~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~ 169 (243)
+-++.+=++-++..|+.+.++|+|+|-||-+-+....+..- ...++--+.+..+...++..+.+ ||+| |++ .++
T Consensus 269 ~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~-viad---GGi-~~~ 343 (486)
T PRK05567 269 DVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIP-VIAD---GGI-RYS 343 (486)
T ss_pred CCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCe-EEEc---CCC-CCH
Confidence 45888889999999999999999999887544322222211 11123334455455444433444 7888 455 477
Q ss_pred HHHHHHHHHHHHHhCCCEEEe
Q 026125 170 NQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 170 e~Av~nA~Rl~keaGAdaVKL 190 (243)
.++ .+.+ +.|||+|.+
T Consensus 344 ~di----~kAl-a~GA~~v~~ 359 (486)
T PRK05567 344 GDI----AKAL-AAGASAVML 359 (486)
T ss_pred HHH----HHHH-HhCCCEEEE
Confidence 888 4566 589999987
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.28 E-value=1.9 Score=38.98 Aligned_cols=90 Identities=22% Similarity=0.238 Sum_probs=52.5
Q ss_pred cEEEEecCC----HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCC
Q 026125 93 PITMVTAYD----YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESS 168 (243)
Q Consensus 93 ~ItmlTAYD----~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s 168 (243)
.++-+...| ...|+.++++|+|.|=+--+--+.- +..+...-+.+.+.+.+++|++.++.| |.+-+.. +
T Consensus 92 ~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~-~~g~~~~~~~~~~~eiv~~vr~~~~~P-v~vKl~~-----~ 164 (296)
T cd04740 92 VIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVK-GGGMAFGTDPEAVAEIVKAVKKATDVP-VIVKLTP-----N 164 (296)
T ss_pred EEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCC-CCcccccCCHHHHHHHHHHHHhccCCC-EEEEeCC-----C
Confidence 345555555 3457778889999994421111111 111222245577778888998887666 4555542 1
Q ss_pred HHHHHHHHHHHHHHhCCCEEEe
Q 026125 169 TNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 169 ~e~Av~nA~Rl~keaGAdaVKL 190 (243)
.++..+.|..+. ++|||+|.+
T Consensus 165 ~~~~~~~a~~~~-~~G~d~i~~ 185 (296)
T cd04740 165 VTDIVEIARAAE-EAGADGLTL 185 (296)
T ss_pred chhHHHHHHHHH-HcCCCEEEE
Confidence 234555554444 799999976
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.74 Score=40.00 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=58.9
Q ss_pred CCHHHHHHhhhC-CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 79 VTLTHLRQKHKN-GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 79 ~tv~~Lr~~kk~-g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
.++.++.+..++ ....+++.+.+...+..++++|+|+|.++ + .|+...........+..++.++...+.| ++
T Consensus 105 ~~~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~G~d~i~~~-~-----~g~t~~~~~~~~~~~~~i~~i~~~~~iP-vi 177 (221)
T PRK01130 105 ETLAELVKRIKEYPGQLLMADCSTLEEGLAAQKLGFDFIGTT-L-----SGYTEETKKPEEPDFALLKELLKAVGCP-VI 177 (221)
T ss_pred CCHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcCCCEEEcC-C-----ceeecCCCCCCCcCHHHHHHHHHhCCCC-EE
Confidence 456666655444 45556778889999999999999998653 1 1221111011111234556676666666 45
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
+.- +. .+++++ .+++ +.|||+|-+=
T Consensus 178 a~G---GI-~t~~~~----~~~l-~~GadgV~iG 202 (221)
T PRK01130 178 AEG---RI-NTPEQA----KKAL-ELGAHAVVVG 202 (221)
T ss_pred EEC---CC-CCHHHH----HHHH-HCCCCEEEEc
Confidence 542 44 367776 5666 5899999874
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.78 Score=44.74 Aligned_cols=98 Identities=19% Similarity=0.201 Sum_probs=60.5
Q ss_pred HHHHhhhC--CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCC-ccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 83 HLRQKHKN--GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 83 ~Lr~~kk~--g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT-~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
.+++.++. .-+|.+=++-++..|+.+.++|+|+|-||=+-|.......-+ ..++--+.+..+..+++..+.| |++|
T Consensus 255 ~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vp-viad 333 (450)
T TIGR01302 255 SIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIP-VIAD 333 (450)
T ss_pred HHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCe-EEEe
Confidence 34444333 345555599999999999999999998874333222111100 1111223455566666555555 7888
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
|++ .++.++ .+.+ +.||++|.+
T Consensus 334 ---GGi-~~~~di----~kAl-a~GA~~V~~ 355 (450)
T TIGR01302 334 ---GGI-RYSGDI----VKAL-AAGADAVML 355 (450)
T ss_pred ---CCC-CCHHHH----HHHH-HcCCCEEEE
Confidence 455 367777 4667 589999988
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.15 E-value=1.5 Score=37.70 Aligned_cols=132 Identities=18% Similarity=0.262 Sum_probs=76.0
Q ss_pred hhCCCcE-EEEecCCHH----HHHHHHHcCCCEE-E-eCcchhhhh-ccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 88 HKNGEPI-TMVTAYDYP----SAVHLDSAGIDIC-L-VGDSAAMVV-HGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 88 kk~g~~I-tmlTAYD~~----sA~iae~AGiDiI-L-VGDSlgmv~-lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
...+.|+ ..+...|.. .|+.+.++|+|.| + +|-...+.. -+|-....-..+.+.+.+++|++..+.+ +.++
T Consensus 51 ~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~-v~vk 129 (231)
T cd02801 51 NPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIP-VTVK 129 (231)
T ss_pred CccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCC-EEEE
Confidence 3444444 446667665 7788889999999 3 332211111 1122222335566777888888877755 5666
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-------chHHHHHHHHHc-CCceeeccCC-cccccc
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-------SRITAARGIVEA-GIAVMGHVGL-TPQAIS 223 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-------~~~~~i~~L~~~-GIPV~GHiGL-tPQ~~~ 223 (243)
+.. ++... +++.+.+.++ .+.|+|.+.+-+... ...+.++.+.+. .|||++-=|+ +|+.+.
T Consensus 130 ~r~-~~~~~-~~~~~~~~~l-~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~ 199 (231)
T cd02801 130 IRL-GWDDE-EETLELAKAL-EDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDAL 199 (231)
T ss_pred Eee-ccCCc-hHHHHHHHHH-HHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHH
Confidence 655 34222 4666655554 468999997654311 122334556553 7999997666 455443
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=94.14 E-value=1.4 Score=39.44 Aligned_cols=90 Identities=19% Similarity=0.190 Sum_probs=57.2
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ke 182 (243)
..++.++++|+|.|++-| + ...|+.. ...+ ...+.+++.++.|++.+ |+. .+++++ .++++.
T Consensus 159 ~~~~~l~~~G~~~iivt~-i--~~~g~~~--g~~~----~~~~~i~~~~~ipvia~----GGi-~s~~di----~~~~~~ 220 (254)
T TIGR00735 159 EWAKEVEKLGAGEILLTS-M--DKDGTKS--GYDL----ELTKAVSEAVKIPVIAS----GGA-GKPEHF----YEAFTK 220 (254)
T ss_pred HHHHHHHHcCCCEEEEeC-c--CcccCCC--CCCH----HHHHHHHHhCCCCEEEe----CCC-CCHHHH----HHHHHc
Confidence 456888999999887744 1 1123321 1223 23456777777775443 245 477777 466765
Q ss_pred hCCCEEEe-----CCCCCchHHHHHHHHHcCCce
Q 026125 183 GGMDAIKL-----EGGSPSRITAARGIVEAGIAV 211 (243)
Q Consensus 183 aGAdaVKL-----EGg~~~~~~~i~~L~~~GIPV 211 (243)
+||++|-+ ||.- ....+.+.|.+.||||
T Consensus 221 g~~dgv~~g~a~~~~~~-~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 221 GKADAALAASVFHYREI-TIGEVKEYLAERGIPV 253 (254)
T ss_pred CCcceeeEhHHHhCCCC-CHHHHHHHHHHCCCcc
Confidence 66999766 5554 3556678899999997
|
|
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.00 E-value=1.2 Score=41.93 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=64.9
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEe-Cc----------chhhh-hccCCCCccCCHHHHHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV-GD----------SAAMV-VHGHDTTLPITLEEMLVHC 144 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILV-GD----------Slgmv-~lG~~dT~~vTldeMi~h~ 144 (243)
+.+|..++.+..+.= ...|+.+.+||||.|-+ |. +..+. --.|-....-.+...++.+
T Consensus 125 ~~mt~~eI~~i~~~f----------~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv 194 (353)
T cd02930 125 RELSEEEIEQTIEDF----------ARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIV 194 (353)
T ss_pred CCCCHHHHHHHHHHH----------HHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHH
Confidence 458888888765421 13677888999999944 31 11110 0001111122255567888
Q ss_pred HHHHcccCCCcEEe------eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 145 RAVARGAKRPLLVG------DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 145 ~aV~Rga~~~fvVa------DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
++|++..+..|.+. |.--+++ +.+++++.+.+|- +.|+|.|.+..|
T Consensus 195 ~aIR~~vG~d~~v~iRi~~~D~~~~g~--~~~e~~~i~~~Le-~~G~d~i~vs~g 246 (353)
T cd02930 195 RAVRAAVGEDFIIIYRLSMLDLVEGGS--TWEEVVALAKALE-AAGADILNTGIG 246 (353)
T ss_pred HHHHHHcCCCceEEEEecccccCCCCC--CHHHHHHHHHHHH-HcCCCEEEeCCC
Confidence 99999887776553 4333344 7899998887765 789999999544
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=2 Score=38.16 Aligned_cols=88 Identities=24% Similarity=0.246 Sum_probs=56.3
Q ss_pred HHHHHHHHcCCCEEEeCc--chhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGD--SAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGD--Slgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
..+..++++|+|.|++-| .-| ...|++ +...+.+++.++.|+ ++-- +. .|.++. .+++
T Consensus 157 ~~~~~~~~~g~~~ii~~~i~~~g-~~~g~d----------~~~i~~~~~~~~ipv-ia~G---Gv-~s~~d~----~~~~ 216 (253)
T PRK02083 157 EWAKEVEELGAGEILLTSMDRDG-TKNGYD----------LELTRAVSDAVNVPV-IASG---GA-GNLEHF----VEAF 216 (253)
T ss_pred HHHHHHHHcCCCEEEEcCCcCCC-CCCCcC----------HHHHHHHHhhCCCCE-EEEC---CC-CCHHHH----HHHH
Confidence 455778889999887643 222 334542 334456667677784 4433 34 367777 3566
Q ss_pred HHhCCCEEEe-----CCCCCchHHHHHHHHHcCCce
Q 026125 181 KEGGMDAIKL-----EGGSPSRITAARGIVEAGIAV 211 (243)
Q Consensus 181 keaGAdaVKL-----EGg~~~~~~~i~~L~~~GIPV 211 (243)
+..||++|-+ ||.-. ...+.+.|.+.||+|
T Consensus 217 ~~~G~~gvivg~al~~~~~~-~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 217 TEGGADAALAASIFHFGEIT-IGELKAYLAEQGIPV 251 (253)
T ss_pred HhCCccEEeEhHHHHcCCCC-HHHHHHHHHHCCCcc
Confidence 5569999987 55543 455567888899997
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=93.81 E-value=1.9 Score=37.47 Aligned_cols=113 Identities=22% Similarity=0.295 Sum_probs=66.9
Q ss_pred CCcEEEEecCCH-----------HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 91 GEPITMVTAYDY-----------PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 91 g~~ItmlTAYD~-----------~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
+.|+..+..+|+ ..+..+.++|+|+|++..+. +..|+ ..++++++..++. .+ +.+ ++++
T Consensus 60 ~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~----~~~p~--~~~~~~~i~~~~~--~g-~~~-iiv~ 129 (219)
T cd04729 60 DLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATD----RPRPD--GETLAELIKRIHE--EY-NCL-LMAD 129 (219)
T ss_pred CCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCC----CCCCC--CcCHHHHHHHHHH--Hh-CCe-EEEE
Confidence 557665555554 27788889999998875332 11121 1367777765543 23 444 3443
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCC-C--------CCchHHHHHHHHHc-CCceeeccCC-ccccccc
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG-G--------SPSRITAARGIVEA-GIAVMGHVGL-TPQAISV 224 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEG-g--------~~~~~~~i~~L~~~-GIPV~GHiGL-tPQ~~~~ 224 (243)
. .|++++ .+.. +.|+|.+.++- | .......++.+.+. +|||++=-|+ +|+.+..
T Consensus 130 v------~t~~ea----~~a~-~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~ 194 (219)
T cd04729 130 I------STLEEA----LNAA-KLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAK 194 (219)
T ss_pred C------CCHHHH----HHHH-HcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHH
Confidence 2 267776 3444 58999998751 1 01112446666653 7999998888 6766554
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=93.81 E-value=1.6 Score=40.57 Aligned_cols=127 Identities=18% Similarity=0.163 Sum_probs=74.3
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEe--Cc---------chhhhh-ccCCCCccCCHHHHHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV--GD---------SAAMVV-HGHDTTLPITLEEMLVHC 144 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILV--GD---------Slgmv~-lG~~dT~~vTldeMi~h~ 144 (243)
+.+|..++++..+. | ...|+.+.++|+|.|-+ |. ...+.- -.|-....-.++..++.+
T Consensus 142 ~~mt~~eI~~ii~~---------~-~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv 211 (336)
T cd02932 142 RELTREEIAEVVDA---------F-VAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVV 211 (336)
T ss_pred CcCCHHHHHHHHHH---------H-HHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHH
Confidence 56888888877542 1 24677888999999943 21 111110 011122233445567888
Q ss_pred HHHHcccCCCc-EEeeCCCC---CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC-----------CchHHHHHHHHH-cC
Q 026125 145 RAVARGAKRPL-LVGDLPFG---TYESSTNQAVDTAVRILKEGGMDAIKLEGGS-----------PSRITAARGIVE-AG 208 (243)
Q Consensus 145 ~aV~Rga~~~f-vVaDmPfg---sY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~-----------~~~~~~i~~L~~-~G 208 (243)
++|++.++.-| |..++.-. ..+.+.+++++-+.++- +.|+|.|.+-.|. .......+.|.+ -.
T Consensus 212 ~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le-~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~ 290 (336)
T cd02932 212 DAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALK-ELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAG 290 (336)
T ss_pred HHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHH-HcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCC
Confidence 99999885433 55776521 11226888988877665 6899999875431 111233344544 37
Q ss_pred Cceeec
Q 026125 209 IAVMGH 214 (243)
Q Consensus 209 IPV~GH 214 (243)
|||++=
T Consensus 291 iPVi~~ 296 (336)
T cd02932 291 IPVIAV 296 (336)
T ss_pred CCEEEe
Confidence 898864
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.69 E-value=1 Score=43.24 Aligned_cols=103 Identities=18% Similarity=0.283 Sum_probs=57.7
Q ss_pred HHHHHHhhhC-CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCc-cCCHHHHHHHHHHHHc------ccC
Q 026125 81 LTHLRQKHKN-GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTL-PITLEEMLVHCRAVAR------GAK 152 (243)
Q Consensus 81 v~~Lr~~kk~-g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~-~vTldeMi~h~~aV~R------ga~ 152 (243)
..++.+.+++ +-|+..=++.++..|+-+.++|+|.|.+|-.-|...-+...+. .+..-..+..+..+++ +-.
T Consensus 176 ~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~ 255 (368)
T PRK08649 176 PLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGR 255 (368)
T ss_pred HHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCC
Confidence 4445544333 4555443789999999898999999999854443221111110 1232223333333322 111
Q ss_pred CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 153 ~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
...||+|=.+ .+..+. .+.+ ..|||+|.+ |+
T Consensus 256 ~vpVIAdGGI----~~~~di----akAl-alGAd~Vm~-Gs 286 (368)
T PRK08649 256 YVHVIADGGI----GTSGDI----AKAI-ACGADAVML-GS 286 (368)
T ss_pred CCeEEEeCCC----CCHHHH----HHHH-HcCCCeecc-cc
Confidence 2348898544 355666 3556 489999998 44
|
|
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.79 Score=41.86 Aligned_cols=76 Identities=17% Similarity=0.128 Sum_probs=55.6
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHH-H
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK-E 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k-e 182 (243)
.|+.++++|+|.+++-=. .-...+-++++.|.+.|.++++.|+++=|.| ++..+++.. .++.+ -
T Consensus 86 ~a~~a~~~Gad~v~~~pP---------~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~--g~~l~~~~l----~~L~~~~ 150 (289)
T cd00951 86 YAQAAEKAGADGILLLPP---------YLTEAPQEGLYAHVEAVCKSTDLGVIVYNRA--NAVLTADSL----ARLAERC 150 (289)
T ss_pred HHHHHHHhCCCEEEECCC---------CCCCCCHHHHHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHH----HHHHhcC
Confidence 357789999999976311 1223477999999999999999999888844 344566655 46665 2
Q ss_pred hCCCEEEeCCCC
Q 026125 183 GGMDAIKLEGGS 194 (243)
Q Consensus 183 aGAdaVKLEGg~ 194 (243)
-...+||-..+.
T Consensus 151 pnivgiKds~~d 162 (289)
T cd00951 151 PNLVGFKDGVGD 162 (289)
T ss_pred CCEEEEEeCCCC
Confidence 467899988774
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.97 Score=42.39 Aligned_cols=122 Identities=16% Similarity=0.112 Sum_probs=72.1
Q ss_pred EEEEecCCHH----HHHHHHHcCCCEE-E-eCcchhhhh-ccCCCCccCCHHHHHHHHHHHHcccCCCcEE-eeCCCCCC
Q 026125 94 ITMVTAYDYP----SAVHLDSAGIDIC-L-VGDSAAMVV-HGHDTTLPITLEEMLVHCRAVARGAKRPLLV-GDLPFGTY 165 (243)
Q Consensus 94 ItmlTAYD~~----sA~iae~AGiDiI-L-VGDSlgmv~-lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV-aDmPfgsY 165 (243)
++.+..-|.. .|+.++++|+|.| + .|-....+. -||-+...-..+-+...+++|++.++.|+.+ .=+.+-..
T Consensus 68 ~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~ 147 (333)
T PRK11815 68 ALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQ 147 (333)
T ss_pred EEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCC
Confidence 3455555544 4677788999999 4 443333322 2333344445566777788888877777544 11222222
Q ss_pred cCCHHHHHHHHHHHHHHhCCCEEEeCCCCC---------------chHHHHHHHHHc--CCceeeccCC
Q 026125 166 ESSTNQAVDTAVRILKEGGMDAIKLEGGSP---------------SRITAARGIVEA--GIAVMGHVGL 217 (243)
Q Consensus 166 ~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~---------------~~~~~i~~L~~~--GIPV~GHiGL 217 (243)
.+.+++++.+..+ +++|++++-+-+... ...+.++.+.++ .|||+|==|+
T Consensus 148 -~t~~~~~~~~~~l-~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI 214 (333)
T PRK11815 148 -DSYEFLCDFVDTV-AEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGI 214 (333)
T ss_pred -cCHHHHHHHHHHH-HHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCc
Confidence 2455666666554 479999999875421 113446777775 6999875444
|
|
| >cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases | Back alignment and domain information |
|---|
Probab=93.43 E-value=2.1 Score=37.87 Aligned_cols=100 Identities=17% Similarity=0.283 Sum_probs=66.1
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEE--EeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc--CCCcE
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC--LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA--KRPLL 156 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiI--LVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga--~~~fv 156 (243)
+.-++++.+.|-++.+-++|+...|.++-+||.|.| .+| .+ --+|.+ .+ +++..+..+.+.. +..++
T Consensus 91 l~ai~~L~~~gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP~vg-R~--~~~g~d-----g~-~~i~~i~~~~~~~~~~tkil 161 (211)
T cd00956 91 LKAIKKLSEEGIKTNVTAIFSAAQALLAAKAGATYVSPFVG-RI--DDLGGD-----GM-ELIREIRTIFDNYGFDTKIL 161 (211)
T ss_pred HHHHHHHHHcCCceeeEEecCHHHHHHHHHcCCCEEEEecC-hH--hhcCCC-----HH-HHHHHHHHHHHHcCCCceEE
Confidence 667788888899999999999999999999999987 355 21 112332 22 3333334444433 33333
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHH
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE 206 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~ 206 (243)
++ |+ .|+.+.+ +.+ ++|||.|++- +++.+.|.+
T Consensus 162 ~A-----s~-r~~~ei~----~a~-~~Gad~vTv~------~~vl~~l~~ 194 (211)
T cd00956 162 AA-----SI-RNPQHVI----EAA-LAGADAITLP------PDVLEQLLK 194 (211)
T ss_pred ec-----cc-CCHHHHH----HHH-HcCCCEEEeC------HHHHHHHhc
Confidence 33 66 5888884 455 4899999996 444565654
|
FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase. |
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=93.38 E-value=2 Score=39.03 Aligned_cols=117 Identities=15% Similarity=0.048 Sum_probs=74.3
Q ss_pred HHHHHHhhhCCCcEEEEec---CCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHc-ccCCCcE
Q 026125 81 LTHLRQKHKNGEPITMVTA---YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR-GAKRPLL 156 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTA---YD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~R-ga~~~fv 156 (243)
+..+.+..+.+.++.++.- +|...-..+.++|+|+|-+.+.. -.++++...++.++. |.. +
T Consensus 61 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gv~~iri~~~~------------~~~~~~~~~i~~ak~~G~~---v 125 (266)
T cd07944 61 LRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSVVDMIRVAFHK------------HEFDEALPLIKAIKEKGYE---V 125 (266)
T ss_pred HHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCCcCEEEEeccc------------ccHHHHHHHHHHHHHCCCe---E
Confidence 4445444333456655543 34555667788999998777533 257888888777763 332 4
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc-C--Cceeec
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-G--IAVMGH 214 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~-G--IPV~GH 214 (243)
.+.+.+ ++..+++..++.+.++. +.|++.|.|-|... ....++++|.++ + ||+--|
T Consensus 126 ~~~~~~-a~~~~~~~~~~~~~~~~-~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H 189 (266)
T cd07944 126 FFNLMA-ISGYSDEELLELLELVN-EIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFH 189 (266)
T ss_pred EEEEEe-ecCCCHHHHHHHHHHHH-hCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEE
Confidence 455555 33357888877776665 68999999998732 344556666553 3 776655
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.97 Score=44.92 Aligned_cols=101 Identities=18% Similarity=0.211 Sum_probs=60.9
Q ss_pred HHHHHHhhhC--CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCC-ccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 81 LTHLRQKHKN--GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 81 v~~Lr~~kk~--g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT-~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
+..+++.++. +-+|..=++-+...|+.+.+||+|.|.||=+-|.......-+ ..+.--..+..+..+++..+.| ++
T Consensus 270 ~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~-vI 348 (495)
T PTZ00314 270 IDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVP-CI 348 (495)
T ss_pred HHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCe-EE
Confidence 3455555443 234444488999999999999999998864433222111000 0111123455566666655555 67
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
+| |++ .++.++ .+.+ +.||++|.+=
T Consensus 349 ad---GGi-~~~~di----~kAl-a~GA~~Vm~G 373 (495)
T PTZ00314 349 AD---GGI-KNSGDI----CKAL-ALGADCVMLG 373 (495)
T ss_pred ec---CCC-CCHHHH----HHHH-HcCCCEEEEC
Confidence 77 566 477887 4566 4899999983
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.8 Score=39.80 Aligned_cols=96 Identities=20% Similarity=0.201 Sum_probs=58.2
Q ss_pred CHHHHH-HhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEe
Q 026125 80 TLTHLR-QKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (243)
Q Consensus 80 tv~~Lr-~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVa 158 (243)
++.++. +.++.+....++.+.+...+..+.++|+|.|.+. ..|..-... .+...+ +...+.+++..+.| +++
T Consensus 110 ~~~~~i~~~~~~g~~~iiv~v~t~~ea~~a~~~G~d~i~~~-~~g~t~~~~-~~~~~~----~~~l~~i~~~~~ip-via 182 (219)
T cd04729 110 TLAELIKRIHEEYNCLLMADISTLEEALNAAKLGFDIIGTT-LSGYTEETA-KTEDPD----FELLKELRKALGIP-VIA 182 (219)
T ss_pred CHHHHHHHHHHHhCCeEEEECCCHHHHHHHHHcCCCEEEcc-Ccccccccc-CCCCCC----HHHHHHHHHhcCCC-EEE
Confidence 455544 4555555677889999999999999999998553 111110000 112222 34566677666666 454
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
.- +. .+++++ .+++ +.|||+|-+=
T Consensus 183 ~G---GI-~~~~~~----~~~l-~~GadgV~vG 206 (219)
T cd04729 183 EG---RI-NSPEQA----AKAL-ELGADAVVVG 206 (219)
T ss_pred eC---CC-CCHHHH----HHHH-HCCCCEEEEc
Confidence 42 34 356666 5666 4789999873
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.23 E-value=2.1 Score=42.98 Aligned_cols=119 Identities=20% Similarity=0.243 Sum_probs=81.8
Q ss_pred HHHHHHhhhCCCcEEEEec---------CC----HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHH
Q 026125 81 LTHLRQKHKNGEPITMVTA---------YD----YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAV 147 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTA---------YD----~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV 147 (243)
+..|++.. .+.+|.|+.= |. -.+-+.+-++|+|++-+.|++.- ++-|....++|
T Consensus 67 lr~lr~~~-~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lnd------------v~nl~~ai~~v 133 (499)
T PRK12330 67 LRTFRKLM-PNSRLQMLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALND------------PRNLEHAMKAV 133 (499)
T ss_pred HHHHHHhC-CCCeEEEEEcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCCh------------HHHHHHHHHHH
Confidence 56666654 5578888872 33 23566777889999999998843 36778888888
Q ss_pred HcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc---CCceeecc
Q 026125 148 ARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA---GIAVMGHV 215 (243)
Q Consensus 148 ~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~---GIPV~GHi 215 (243)
++.-... .+.+-| +|..-+++..++.|.++. +.|||.|.|-|-.. .+..++++|.++ +||+--|.
T Consensus 134 k~ag~~~--~~~i~yt~sp~~t~e~~~~~a~~l~-~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~ 207 (499)
T PRK12330 134 KKVGKHA--QGTICYTVSPIHTVEGFVEQAKRLL-DMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHC 207 (499)
T ss_pred HHhCCeE--EEEEEEecCCCCCHHHHHHHHHHHH-HcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEe
Confidence 8765533 122211 122348888888888877 69999999998743 244667788776 58887774
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=93.05 E-value=1.7 Score=41.87 Aligned_cols=89 Identities=20% Similarity=0.237 Sum_probs=60.7
Q ss_pred CcEEEEe-cCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCC-ccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCH
Q 026125 92 EPITMVT-AYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESST 169 (243)
Q Consensus 92 ~~ItmlT-AYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT-~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~ 169 (243)
.+.++-+ .-++.-|+.+.++|+|.|.||=.-|.++-+..-+ ..+..=..+..|...+++...| |++|=.+ . +.
T Consensus 150 ~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~-VIaDGGI---r-~~ 224 (343)
T TIGR01305 150 EHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGH-IISDGGC---T-CP 224 (343)
T ss_pred CCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCe-EEEcCCc---C-ch
Confidence 4555555 9999999999999999999986666665555444 3334445566666666655555 8899665 2 33
Q ss_pred HHHHHHHHHHHHHhCCCEEEe
Q 026125 170 NQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 170 e~Av~nA~Rl~keaGAdaVKL 190 (243)
-+. .+.+ ..|||+|.+
T Consensus 225 gDI----~KAL-A~GAd~VMl 240 (343)
T TIGR01305 225 GDV----AKAF-GAGADFVML 240 (343)
T ss_pred hHH----HHHH-HcCCCEEEE
Confidence 444 3455 489999988
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.98 Score=41.61 Aligned_cols=93 Identities=22% Similarity=0.190 Sum_probs=58.0
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
|+.-=+.+.++|=.+.-.+.-|...|+-.+++||.++.--.|--.+-+|..+. +..+.+++-.+.| ||+|
T Consensus 112 tl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~GcaavMPlgsPIGSg~Gi~n~---------~~l~~i~~~~~vP-vIvD 181 (247)
T PF05690_consen 112 TLKAAEILVKEGFVVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGRGIQNP---------YNLRIIIERADVP-VIVD 181 (247)
T ss_dssp HHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT---SSTH---------HHHHHHHHHGSSS-BEEE
T ss_pred HHHHHHHHHHCCCEEeecCCCCHHHHHHHHHCCCCEEEecccccccCcCCCCH---------HHHHHHHHhcCCc-EEEe
Confidence 45555567666644444466789999999999999998555555556777763 4556677666777 6778
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
=.. .++.+| ...| |.|||+|-+-
T Consensus 182 AGi----G~pSda----a~AM-ElG~daVLvN 204 (247)
T PF05690_consen 182 AGI----GTPSDA----AQAM-ELGADAVLVN 204 (247)
T ss_dssp S-------SHHHH----HHHH-HTT-SEEEES
T ss_pred CCC----CCHHHH----HHHH-HcCCceeehh
Confidence 755 356777 4567 6999999885
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=92.89 E-value=1.3 Score=40.43 Aligned_cols=95 Identities=17% Similarity=0.144 Sum_probs=61.1
Q ss_pred HHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCC
Q 026125 106 VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGM 185 (243)
Q Consensus 106 ~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGA 185 (243)
+.+.++|+|+|-+.+++.- ++.+...++.++..-....+-.++.+.+. .+++..++.+.++. +.||
T Consensus 98 ~~~~~~g~~~iri~~~~~~------------~~~~~~~i~~ak~~G~~v~~~i~~~~~~~-~~~~~~~~~~~~~~-~~Ga 163 (275)
T cd07937 98 EKAAKNGIDIFRIFDALND------------VRNLEVAIKAVKKAGKHVEGAICYTGSPV-HTLEYYVKLAKELE-DMGA 163 (275)
T ss_pred HHHHHcCCCEEEEeecCCh------------HHHHHHHHHHHHHCCCeEEEEEEecCCCC-CCHHHHHHHHHHHH-HcCC
Confidence 3566889999988766633 56677666666432211111246677654 57888877776665 6999
Q ss_pred CEEEeCCCCC-----chHHHHHHHHHc-CCceeec
Q 026125 186 DAIKLEGGSP-----SRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 186 daVKLEGg~~-----~~~~~i~~L~~~-GIPV~GH 214 (243)
+.|.|-|... ....++++|.++ ++|+--|
T Consensus 164 ~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H 198 (275)
T cd07937 164 DSICIKDMAGLLTPYAAYELVKALKKEVGLPIHLH 198 (275)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 9999998743 244556666554 5666655
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.73 Score=42.69 Aligned_cols=87 Identities=21% Similarity=0.221 Sum_probs=62.7
Q ss_pred EEEecCCH----HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCC-cCCH
Q 026125 95 TMVTAYDY----PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTY-ESST 169 (243)
Q Consensus 95 tmlTAYD~----~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY-~~s~ 169 (243)
+-+++.+. .-|+.+++.|+|.|++- =|.-..-+-+++..|-++|+++++.|+++=+-|.-+- ..++
T Consensus 78 aG~g~~~t~eai~lak~a~~~Gad~il~v---------~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~ 148 (299)
T COG0329 78 AGVGSNSTAEAIELAKHAEKLGADGILVV---------PPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSP 148 (299)
T ss_pred EecCCCcHHHHHHHHHHHHhcCCCEEEEe---------CCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCH
Confidence 33555544 34688999999998754 1334455689999999999999999999999996432 2344
Q ss_pred HHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 170 NQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 170 e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
|.. .++.+-....+||-..|.
T Consensus 149 e~i----~~la~~~nivgiKd~~gd 169 (299)
T COG0329 149 ETI----ARLAEHPNIVGVKDSSGD 169 (299)
T ss_pred HHH----HHHhcCCCEEEEEeCCcC
Confidence 444 566653578899998885
|
|
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=92.77 E-value=1.6 Score=41.01 Aligned_cols=118 Identities=14% Similarity=0.093 Sum_probs=71.8
Q ss_pred EEEecCCHH----HHHHHHHcCCCEE-E-eCcchhhhh-ccCCCCccCCHHHHHHHHHHHHcccCCCcEE-eeCCCCCCc
Q 026125 95 TMVTAYDYP----SAVHLDSAGIDIC-L-VGDSAAMVV-HGHDTTLPITLEEMLVHCRAVARGAKRPLLV-GDLPFGTYE 166 (243)
Q Consensus 95 tmlTAYD~~----sA~iae~AGiDiI-L-VGDSlgmv~-lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV-aDmPfgsY~ 166 (243)
+.+..-|.. .|+.++++|+|.| + .|=....+. -|+-+-+.-..+.+...+++|++..+.|+.+ .-+.+-..
T Consensus 59 vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~- 137 (318)
T TIGR00742 59 LQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPL- 137 (318)
T ss_pred EEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCc-
Confidence 445555543 3666778899998 3 554444322 2334444456666777788898888888544 44444222
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCCC-------c--------hHHHHHHHHHc--CCceeec
Q 026125 167 SSTNQAVDTAVRILKEGGMDAIKLEGGSP-------S--------RITAARGIVEA--GIAVMGH 214 (243)
Q Consensus 167 ~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-------~--------~~~~i~~L~~~--GIPV~GH 214 (243)
.+.+++++.+.. ++++|+++|-+.|... . .-..|+.+.++ .|||+|=
T Consensus 138 ~~~~~~~~~~~~-l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~N 201 (318)
T TIGR00742 138 DSYEFLCDFVEI-VSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEIN 201 (318)
T ss_pred chHHHHHHHHHH-HHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEE
Confidence 234666666654 4579999999988742 0 12335666663 6999884
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.72 E-value=2.2 Score=40.70 Aligned_cols=109 Identities=15% Similarity=0.184 Sum_probs=74.4
Q ss_pred cEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHH
Q 026125 93 PITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQA 172 (243)
Q Consensus 93 ~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~A 172 (243)
+...-.+=+....+.+-++|+|.|.+|-. .-..-+.. ...|.+|+...++-....-...+|..++-. . .+..+.
T Consensus 7 ~ell~pag~l~~l~~ai~~GADaVY~G~~-~~~~R~~a--~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~--~-~~~~~~ 80 (347)
T COG0826 7 PELLAPAGNLEDLKAAIAAGADAVYIGEK-EFGLRRRA--LNFSVEDLAEAVELAHSAGKKVYVAVNTLL--H-NDELET 80 (347)
T ss_pred ceeecCCCCHHHHHHHHHcCCCEEEeCCc-cccccccc--ccCCHHHHHHHHHHHHHcCCeEEEEecccc--c-cchhhH
Confidence 33444555556666777889999999976 22223333 567888887777766555555666677755 2 344555
Q ss_pred HHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcC--Ccee
Q 026125 173 VDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAG--IAVM 212 (243)
Q Consensus 173 v~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~G--IPV~ 212 (243)
+....+.+.+.|+|+|-+-|- -+|..+.+.| +|+.
T Consensus 81 ~~~~l~~l~e~GvDaviv~Dp-----g~i~l~~e~~p~l~ih 117 (347)
T COG0826 81 LERYLDRLVELGVDAVIVADP-----GLIMLARERGPDLPIH 117 (347)
T ss_pred HHHHHHHHHHcCCCEEEEcCH-----HHHHHHHHhCCCCcEE
Confidence 677777777999999998754 3467788888 8874
|
|
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=92.72 E-value=5.7 Score=37.11 Aligned_cols=146 Identities=11% Similarity=0.134 Sum_probs=91.7
Q ss_pred CCHHH-HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC
Q 026125 79 VTLTH-LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK 152 (243)
Q Consensus 79 ~tv~~-Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~ 152 (243)
++..+ |++.++++--+-..++||+.+++ .||+.+.++|| +..+. .-..| .++.+...+++.++.++
T Consensus 4 v~~k~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~-~~~~~-------~~~~~~~~~~~~A~~~~ 75 (286)
T PRK08610 4 VSMKEMLIDAKENGYAVGQYNLNNLEFTQAILEASQEENAPVILGVSEGA-ARYMS-------GFYTVVKMVEGLMHDLN 75 (286)
T ss_pred CcHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccH-HhhcC-------cHHHHHHHHHHHHHHcC
Confidence 45555 45566777889999999999985 57888999997 43222 11111 24556666677766665
Q ss_pred --CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCcccccc
Q 026125 153 --RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTPQAIS 223 (243)
Q Consensus 153 --~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLtPQ~~~ 223 (243)
-| |+.-+..|. +.|.. .+.+ ++|...|.+.|+... +..+++.--..||+|=|=||-++..-.
T Consensus 76 ~~vP-V~lHLDHg~---~~e~i----~~ai-~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed 146 (286)
T PRK08610 76 ITIP-VAIHLDHGS---SFEKC----KEAI-DAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQED 146 (286)
T ss_pred CCCC-EEEECCCCC---CHHHH----HHHH-HcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccC
Confidence 35 778887742 44555 4566 489999999888432 234456566799999877777763321
Q ss_pred cccCccccccCHHhhccc
Q 026125 224 VLGGFRPQGKNVTSAVKV 241 (243)
Q Consensus 224 ~~GGykvqGkt~~~A~~l 241 (243)
-..+-...-.+.|+|+++
T Consensus 147 ~~~~~~~~yT~peea~~F 164 (286)
T PRK08610 147 DVVADGIIYADPKECQEL 164 (286)
T ss_pred CCCCcccccCCHHHHHHH
Confidence 100001122567777764
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.59 E-value=1.4 Score=43.71 Aligned_cols=70 Identities=20% Similarity=0.363 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHH
Q 026125 100 YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 100 YD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl 179 (243)
.+...|..+-++|+|+|.+- +. +|+... .+...+.+++..+...|++ |+- .|.+++ ..+
T Consensus 241 ~~~~~~~~l~~ag~d~i~id-~a----~G~s~~-------~~~~i~~ik~~~~~~~v~a----G~V-~t~~~a----~~~ 299 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVD-SS----QGNSIY-------QIDMIKKLKSNYPHVDIIA----GNV-VTADQA----KNL 299 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEe-cC----CCCchH-------HHHHHHHHHhhCCCceEEE----CCc-CCHHHH----HHH
Confidence 45678888889999999763 21 333322 2445566777666555666 445 577777 445
Q ss_pred HHHhCCCEEEeC
Q 026125 180 LKEGGMDAIKLE 191 (243)
Q Consensus 180 ~keaGAdaVKLE 191 (243)
+ ++|||+|++-
T Consensus 300 ~-~aGad~I~vg 310 (495)
T PTZ00314 300 I-DAGADGLRIG 310 (495)
T ss_pred H-HcCCCEEEEC
Confidence 5 6999999973
|
|
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=92.56 E-value=1.3 Score=40.42 Aligned_cols=76 Identities=17% Similarity=0.082 Sum_probs=55.6
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHH-H
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK-E 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k-e 182 (243)
.|+.++++|+|.+++--. .-...+-++++.|.+.|+.+++.|+++-+.+ ++..+++.. .+|.+ -
T Consensus 91 ~a~~a~~~Gadav~~~pP---------~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~--g~~l~~~~~----~~La~~~ 155 (296)
T TIGR03249 91 IARLAEKAGADGYLLLPP---------YLINGEQEGLYAHVEAVCESTDLGVIVYQRD--NAVLNADTL----ERLADRC 155 (296)
T ss_pred HHHHHHHhCCCEEEECCC---------CCCCCCHHHHHHHHHHHHhccCCCEEEEeCC--CCCCCHHHH----HHHHhhC
Confidence 578889999999876422 2233467999999999999999998887732 444576655 45664 2
Q ss_pred hCCCEEEeCCCC
Q 026125 183 GGMDAIKLEGGS 194 (243)
Q Consensus 183 aGAdaVKLEGg~ 194 (243)
-...+||-..+.
T Consensus 156 ~nvvgiKds~~d 167 (296)
T TIGR03249 156 PNLVGFKDGIGD 167 (296)
T ss_pred CCEEEEEeCCCC
Confidence 478999987664
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >PRK09875 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.54 E-value=5.2 Score=37.24 Aligned_cols=137 Identities=9% Similarity=0.086 Sum_probs=92.1
Q ss_pred CHHHHHHhhh-CCCcEEEEecCCH-----HHHHHHHHcCCCEEE-eCcchhhhhccCCC-CccCCHHHHH-HHHHHHHcc
Q 026125 80 TLTHLRQKHK-NGEPITMVTAYDY-----PSAVHLDSAGIDICL-VGDSAAMVVHGHDT-TLPITLEEML-VHCRAVARG 150 (243)
Q Consensus 80 tv~~Lr~~kk-~g~~ItmlTAYD~-----~sA~iae~AGiDiIL-VGDSlgmv~lG~~d-T~~vTldeMi-~h~~aV~Rg 150 (243)
.+.+|++.++ +++-|+=+|++++ .-++++++.|+.+|. +|.-..-. +|+ ....+.|++. ...+.|..|
T Consensus 36 ~~~el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is~~tgv~Iv~~TG~y~~~~---~p~~~~~~~~e~la~~~i~ei~~G 112 (292)
T PRK09875 36 ICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQDAF---FPEHVATRSVQELAQEMVDEIEQG 112 (292)
T ss_pred HHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHhCCcEEEcCcCCCCcc---CCHHHhcCCHHHHHHHHHHHHHHh
Confidence 3445555433 5688899999886 468999999999995 77443221 222 2346778875 455677777
Q ss_pred cC----CCcEE--eeCCCCCCcCCHHHHHHHHHHHHHHhCCCE-EEeCCCCCchHHHHHHHHHcCC----ceeeccCCcc
Q 026125 151 AK----RPLLV--GDLPFGTYESSTNQAVDTAVRILKEGGMDA-IKLEGGSPSRITAARGIVEAGI----AVMGHVGLTP 219 (243)
Q Consensus 151 a~----~~fvV--aDmPfgsY~~s~e~Av~nA~Rl~keaGAda-VKLEGg~~~~~~~i~~L~~~GI----PV~GHiGLtP 219 (243)
.. ++=+| .-..++......+.+++.|.+.-++.|+-. ++.+.+. ....+++.|.+.|+ -|+||....+
T Consensus 113 i~gt~ikaGvIGeiG~~~~~it~~E~kvl~Aaa~a~~~TG~pi~~Ht~~~~-~g~e~l~il~e~Gvd~~rvvi~H~d~~~ 191 (292)
T PRK09875 113 IDGTELKAGIIAEIGSSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFST-MGLEQLALLQAHGVDLSRVTVGHCDLKD 191 (292)
T ss_pred hccCCCcccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCcEEEcCCCcc-chHHHHHHHHHcCcCcceEEEeCCCCCC
Confidence 65 44344 444444344456679999999999999743 3566554 34556889999999 5889998765
Q ss_pred c
Q 026125 220 Q 220 (243)
Q Consensus 220 Q 220 (243)
.
T Consensus 192 d 192 (292)
T PRK09875 192 N 192 (292)
T ss_pred C
Confidence 4
|
|
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=92.53 E-value=1.3 Score=40.79 Aligned_cols=76 Identities=17% Similarity=0.122 Sum_probs=55.6
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHH-HH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL-KE 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~-ke 182 (243)
.|+.++++|+|.+++--. .-...+-++++.|-++|++.++.|+++=|.| ++..+++.. .++. +-
T Consensus 93 ~~~~a~~~Gadav~~~pP---------~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~--g~~l~~~~l----~~L~~~~ 157 (303)
T PRK03620 93 YAQAAERAGADGILLLPP---------YLTEAPQEGLAAHVEAVCKSTDLGVIVYNRD--NAVLTADTL----ARLAERC 157 (303)
T ss_pred HHHHHHHhCCCEEEECCC---------CCCCCCHHHHHHHHHHHHHhCCCCEEEEcCC--CCCCCHHHH----HHHHhhC
Confidence 457788999999977422 1223467899999999999999999888854 455576655 4565 33
Q ss_pred hCCCEEEeCCCC
Q 026125 183 GGMDAIKLEGGS 194 (243)
Q Consensus 183 aGAdaVKLEGg~ 194 (243)
-...+||-+.+.
T Consensus 158 pni~giK~s~~d 169 (303)
T PRK03620 158 PNLVGFKDGVGD 169 (303)
T ss_pred CCEEEEEeCCCC
Confidence 468899988764
|
|
| >PRK12656 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=92.46 E-value=3.3 Score=37.35 Aligned_cols=102 Identities=14% Similarity=0.131 Sum_probs=69.9
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEE--EeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC--LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiI--LVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
-+.-++++.++|-++.+-.+|+...|.+|.++|+|.| .+| .+. -.|.+ .++.+...++.+.+-...+=|+
T Consensus 94 Gl~Ai~~L~~~Gi~vn~T~ifs~~Qa~~Aa~aGa~yvsPyvg-Ri~--d~g~D-----~~~~i~~i~~~~~~~~~~tkIL 165 (222)
T PRK12656 94 GLAAIKTLKAEGYHITATAIYTVFQGLLAIEAGADYLAPYYN-RME--NLNID-----SNAVIGQLAEAIDRENSDSKIL 165 (222)
T ss_pred HHHHHHHHHHCCCceEEeeeCCHHHHHHHHHCCCCEEecccc-hhh--hcCCC-----HHHHHHHHHHHHHhcCCCCEEE
Confidence 4777888889999999999999999999999999988 477 221 12333 3444445456665533334344
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHH
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIV 205 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~ 205 (243)
+- |+ .++++. .+.. ++|||.+-+- +++++.|.
T Consensus 166 aA----S~-r~~~~v----~~a~-~~G~d~vTvp------~~vl~~l~ 197 (222)
T PRK12656 166 AA----SF-KNVAQV----NKAF-ALGAQAVTAG------PDVFEAAF 197 (222)
T ss_pred EE----ec-CCHHHH----HHHH-HcCCCEEecC------HHHHHHHh
Confidence 33 77 588888 4555 4899999885 45556663
|
|
| >TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase | Back alignment and domain information |
|---|
Probab=92.42 E-value=1.1 Score=43.14 Aligned_cols=79 Identities=25% Similarity=0.399 Sum_probs=56.0
Q ss_pred HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 026125 107 HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (243)
Q Consensus 107 iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAd 186 (243)
-.++||+|++-+- |.=.+-....+.|+++.+.| +|+|.=| .|. .| ...+ +.|+|
T Consensus 42 ~L~~aGceiVRva---------------vp~~~~A~al~~I~~~~~iP-lVADIHF-d~~----lA----l~a~-~~g~d 95 (346)
T TIGR00612 42 ALEEAGCDIVRVT---------------VPDRESAAAFEAIKEGTNVP-LVADIHF-DYR----LA----ALAM-AKGVA 95 (346)
T ss_pred HHHHcCCCEEEEc---------------CCCHHHHHhHHHHHhCCCCC-EEEeeCC-CcH----HH----HHHH-HhccC
Confidence 3567888888542 11112255567899999988 7999988 562 23 4455 57999
Q ss_pred EEEeCCC----CCchHHHHHHHHHcCCce
Q 026125 187 AIKLEGG----SPSRITAARGIVEAGIAV 211 (243)
Q Consensus 187 aVKLEGg----~~~~~~~i~~L~~~GIPV 211 (243)
.+.|--| .+....+++...+.|||+
T Consensus 96 kiRINPGNig~~e~v~~vv~~ak~~~ipI 124 (346)
T TIGR00612 96 KVRINPGNIGFRERVRDVVEKARDHGKAM 124 (346)
T ss_pred eEEECCCCCCCHHHHHHHHHHHHHCCCCE
Confidence 9999876 445667788888999997
|
Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins. |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.40 E-value=2.5 Score=42.25 Aligned_cols=69 Identities=20% Similarity=0.372 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE-eeCCCCCCcCCHHHHHHHHHH
Q 026125 100 YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-GDLPFGTYESSTNQAVDTAVR 178 (243)
Q Consensus 100 YD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV-aDmPfgsY~~s~e~Av~nA~R 178 (243)
.|...+..+-+||+|+|.+- +. +|+.. .++...+.|++-.|..+|+ +|. .+.++| .+
T Consensus 248 ~~~~r~~~l~~ag~d~i~iD-~~----~g~~~-------~~~~~i~~ik~~~p~~~vi~g~v------~t~e~a----~~ 305 (505)
T PLN02274 248 SDKERLEHLVKAGVDVVVLD-SS----QGDSI-------YQLEMIKYIKKTYPELDVIGGNV------VTMYQA----QN 305 (505)
T ss_pred cHHHHHHHHHHcCCCEEEEe-CC----CCCcH-------HHHHHHHHHHHhCCCCcEEEecC------CCHHHH----HH
Confidence 56788999999999999873 31 33322 3455567787777766665 564 467777 55
Q ss_pred HHHHhCCCEEEeC
Q 026125 179 ILKEGGMDAIKLE 191 (243)
Q Consensus 179 l~keaGAdaVKLE 191 (243)
++ ++|||+|++-
T Consensus 306 a~-~aGaD~i~vg 317 (505)
T PLN02274 306 LI-QAGVDGLRVG 317 (505)
T ss_pred HH-HcCcCEEEEC
Confidence 66 6999999984
|
|
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=92.39 E-value=1.6 Score=40.68 Aligned_cols=94 Identities=21% Similarity=0.208 Sum_probs=66.2
Q ss_pred CHHHHHHhhhCCCcEEEE-ecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEe
Q 026125 80 TLTHLRQKHKNGEPITMV-TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (243)
Q Consensus 80 tv~~Lr~~kk~g~~Itml-TAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVa 158 (243)
|+.-=+.+.++| ..+++ +.-|...|+-.+++||.++.--.|--.+-+|..+ -+..+.|+.-.+.| |+.
T Consensus 126 tl~Aae~Lv~eG-F~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~n---------~~~l~~i~e~~~vp-Viv 194 (267)
T CHL00162 126 TLKAAEFLVKKG-FTVLPYINADPMLAKHLEDIGCATVMPLGSPIGSGQGLQN---------LLNLQIIIENAKIP-VII 194 (267)
T ss_pred HHHHHHHHHHCC-CEEeecCCCCHHHHHHHHHcCCeEEeeccCcccCCCCCCC---------HHHHHHHHHcCCCc-EEE
Confidence 455555666665 44555 6678999999999999999754444445667776 36667777776666 777
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
|= +- .+++++ .+.| |.|||+|-+--+
T Consensus 195 dA---GI-gt~sDa----~~Am-ElGaDgVL~nSa 220 (267)
T CHL00162 195 DA---GI-GTPSEA----SQAM-ELGASGVLLNTA 220 (267)
T ss_pred eC---Cc-CCHHHH----HHHH-HcCCCEEeecce
Confidence 74 44 367787 4667 699999988655
|
|
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=92.32 E-value=1.8 Score=40.92 Aligned_cols=128 Identities=20% Similarity=0.188 Sum_probs=74.7
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEe--Cc--chhhhhcc----CCCCccCCHH----HHHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV--GD--SAAMVVHG----HDTTLPITLE----EMLVHC 144 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILV--GD--Slgmv~lG----~~dT~~vTld----eMi~h~ 144 (243)
+.+|..++.+..+. | ...|+.+.+||||.|-+ |. =+...+-- -.|--.=++| -.++..
T Consensus 130 ~~mt~eeI~~ii~~---------f-~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii 199 (337)
T PRK13523 130 VEMTKEQIKETVLA---------F-KQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREII 199 (337)
T ss_pred CcCCHHHHHHHHHH---------H-HHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHH
Confidence 46888888887542 1 24678889999999943 31 11111000 0111111343 345667
Q ss_pred HHHHcccCCCcEE----eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc----------hHHHHHHHHHc-CC
Q 026125 145 RAVARGAKRPLLV----GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS----------RITAARGIVEA-GI 209 (243)
Q Consensus 145 ~aV~Rga~~~fvV----aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~----------~~~~i~~L~~~-GI 209 (243)
++|++.++.++.+ .|.-.+++ +++++++.+.++- +.|+|.|.+-+|... ....++.+.+. +|
T Consensus 200 ~~ir~~~~~~v~vRis~~d~~~~G~--~~~e~~~i~~~l~-~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~i 276 (337)
T PRK13523 200 DAVKEVWDGPLFVRISASDYHPGGL--TVQDYVQYAKWMK-EQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANI 276 (337)
T ss_pred HHHHHhcCCCeEEEecccccCCCCC--CHHHHHHHHHHHH-HcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCC
Confidence 7888877666444 23333344 6899999887775 689999999887411 12334444443 68
Q ss_pred ceeeccCC
Q 026125 210 AVMGHVGL 217 (243)
Q Consensus 210 PV~GHiGL 217 (243)
||++==++
T Consensus 277 pVi~~G~i 284 (337)
T PRK13523 277 ATGAVGLI 284 (337)
T ss_pred cEEEeCCC
Confidence 98864343
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=92.27 E-value=3 Score=41.40 Aligned_cols=96 Identities=25% Similarity=0.292 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHH
Q 026125 100 YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 100 YD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl 179 (243)
-+...+...-++|+|+|.+ |+. +|++ ..+ +...+.|+...+..+|++| +-.+.|.+ ..+
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~-D~a----~g~~----~~~---~~~i~~i~~~~~~~~vi~g-----~~~t~~~~----~~l 283 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVI-DTA----HGHQ----VKM---ISAIKAVRALDLGVPIVAG-----NVVSAEGV----RDL 283 (475)
T ss_pred cHHHHHHHHHHhCCCEEEE-eCC----CCCc----HHH---HHHHHHHHHHCCCCeEEEe-----ccCCHHHH----HHH
Confidence 4445666677789999877 333 4665 234 4444667666666778883 22566776 456
Q ss_pred HHHhCCCEEEeCCCCCc-----------------hHHHHHHHHHcCCceeeccCC
Q 026125 180 LKEGGMDAIKLEGGSPS-----------------RITAARGIVEAGIAVMGHVGL 217 (243)
Q Consensus 180 ~keaGAdaVKLEGg~~~-----------------~~~~i~~L~~~GIPV~GHiGL 217 (243)
+ ++|||+||+-+|... ..+..+++.+.|+||++.=|+
T Consensus 284 ~-~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi 337 (475)
T TIGR01303 284 L-EAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGV 337 (475)
T ss_pred H-HhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeCCC
Confidence 6 699999996555211 113344456678999887444
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=92.24 E-value=1.4 Score=41.54 Aligned_cols=133 Identities=11% Similarity=0.109 Sum_probs=75.4
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeC--c--chhhhhcc----CCCCccCCHH----HHHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVG--D--SAAMVVHG----HDTTLPITLE----EMLVHC 144 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVG--D--Slgmv~lG----~~dT~~vTld----eMi~h~ 144 (243)
+.+|..++++..++ | ...|+.|.+||||.|-+- . =+...+-- ..|--.=++| -.++..
T Consensus 132 ~~mt~~eI~~ii~~---------f-~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii 201 (353)
T cd04735 132 RELTHEEIEDIIDA---------F-GEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVV 201 (353)
T ss_pred ccCCHHHHHHHHHH---------H-HHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHH
Confidence 56888888876542 1 246788999999999432 1 11111000 0111111233 245667
Q ss_pred HHHHcccC----CCcEE-eeCC-----CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCch---------HHH---HH
Q 026125 145 RAVARGAK----RPLLV-GDLP-----FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSR---------ITA---AR 202 (243)
Q Consensus 145 ~aV~Rga~----~~fvV-aDmP-----fgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~---------~~~---i~ 202 (243)
++|++.++ ..|.| .-+. .++ .+.++.++.+..+. +.|+|.|.+-+|.... ... ++
T Consensus 202 ~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g--~~~ee~~~i~~~L~-~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik 278 (353)
T cd04735 202 KAVQEVIDKHADKDFILGYRFSPEEPEEPG--IRMEDTLALVDKLA-DKGLDYLHISLWDFDRKSRRGRDDNQTIMELVK 278 (353)
T ss_pred HHHHHHhccccCCCceEEEEECcccccCCC--CCHHHHHHHHHHHH-HcCCCEEEeccCccccccccCCcchHHHHHHHH
Confidence 78888775 44444 3222 233 36788888776655 7899999997652110 122 33
Q ss_pred HHHHcCCceeeccCC-ccccc
Q 026125 203 GIVEAGIAVMGHVGL-TPQAI 222 (243)
Q Consensus 203 ~L~~~GIPV~GHiGL-tPQ~~ 222 (243)
..+..+|||++-=|+ +|+..
T Consensus 279 ~~~~~~iPVi~~Ggi~t~e~a 299 (353)
T cd04735 279 ERIAGRLPLIAVGSINTPDDA 299 (353)
T ss_pred HHhCCCCCEEEECCCCCHHHH
Confidence 333347999987776 56554
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=92.24 E-value=1.8 Score=40.80 Aligned_cols=106 Identities=15% Similarity=0.171 Sum_probs=63.3
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEe----Ccc-------hhhhh-ccCCCCccCCHHHHHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV----GDS-------AAMVV-HGHDTTLPITLEEMLVHC 144 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILV----GDS-------lgmv~-lG~~dT~~vTldeMi~h~ 144 (243)
+.+|..+|++..+. | ...|+.|.+||+|.|-+ |.= ..+.- -+|-....-.+.-.++..
T Consensus 129 ~~mt~~eI~~ii~~---------f-~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv 198 (343)
T cd04734 129 KAMEEEDIEEIIAA---------F-ADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVL 198 (343)
T ss_pred CcCCHHHHHHHHHH---------H-HHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHH
Confidence 46899998887542 1 24677788999999943 211 11110 111111222334456778
Q ss_pred HHHHcccCCCcEE-eeCCCCCC---cCCHHHHHHHHHHHHHHhC-CCEEEeCCC
Q 026125 145 RAVARGAKRPLLV-GDLPFGTY---ESSTNQAVDTAVRILKEGG-MDAIKLEGG 193 (243)
Q Consensus 145 ~aV~Rga~~~fvV-aDmPfgsY---~~s~e~Av~nA~Rl~keaG-AdaVKLEGg 193 (243)
++|++.++..|.+ .=+..-.| +.+.+++++.+.++- +.| +|.|.+.+|
T Consensus 199 ~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~-~~G~vd~i~vs~g 251 (343)
T cd04734 199 AAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLA-AEGLIDYVNVSAG 251 (343)
T ss_pred HHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHH-hcCCCCEEEeCCC
Confidence 8999988777644 33332111 136889988876665 577 899999655
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=92.19 E-value=7.8 Score=35.18 Aligned_cols=104 Identities=20% Similarity=0.191 Sum_probs=61.3
Q ss_pred CHHHHHHhhhC-CC-cEEEEecCCHH----HHHHHHHcC--CCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc
Q 026125 80 TLTHLRQKHKN-GE-PITMVTAYDYP----SAVHLDSAG--IDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA 151 (243)
Q Consensus 80 tv~~Lr~~kk~-g~-~ItmlTAYD~~----sA~iae~AG--iDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga 151 (243)
.+..++..++. +. .++-+...|.. .|+.+++++ +|.|-+-=|--+. -|+.+...-..+.+.+.+++|++..
T Consensus 78 ~~~~~~~~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~-~~~g~~l~~~~~~~~eiv~~vr~~~ 156 (300)
T TIGR01037 78 FLEELKPVREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHV-KGGGIAIGQDPELSADVVKAVKDKT 156 (300)
T ss_pred HHHHHHHHhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCC-CCCccccccCHHHHHHHHHHHHHhc
Confidence 34555543322 22 34555566633 366666663 8988543221111 2444444456677788889999887
Q ss_pred CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 152 KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 152 ~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
+.| |.+-++- +.++..+.|.++ +++|+|+|.+-
T Consensus 157 ~~p-v~vKi~~-----~~~~~~~~a~~l-~~~G~d~i~v~ 189 (300)
T TIGR01037 157 DVP-VFAKLSP-----NVTDITEIAKAA-EEAGADGLTLI 189 (300)
T ss_pred CCC-EEEECCC-----ChhhHHHHHHHH-HHcCCCEEEEE
Confidence 666 6777752 335666666554 47999999874
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=92.15 E-value=2.2 Score=39.02 Aligned_cols=128 Identities=23% Similarity=0.294 Sum_probs=76.6
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEE-EeCcchhhhhccC-------------CC----CccCCHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC-LVGDSAAMVVHGH-------------DT----TLPITLE 138 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiI-LVGDSlgmv~lG~-------------~d----T~~vTld 138 (243)
+.+|..++.+..+.= ...|+.+.++|+|.| +-+. +|| .| ...-.+.
T Consensus 129 ~~mt~~ei~~~i~~~----------~~aA~~a~~aGfDgveih~~------~gyL~~qFlsp~~n~R~d~yGgs~enr~r 192 (327)
T cd02803 129 REMTKEEIEQIIEDF----------AAAARRAKEAGFDGVEIHGA------HGYLLSQFLSPYTNKRTDEYGGSLENRAR 192 (327)
T ss_pred CcCCHHHHHHHHHHH----------HHHHHHHHHcCCCEEEEcch------hhhHHHHhcCccccCCCcccCCCHHHHHH
Confidence 568999998875421 246778899999998 4321 222 11 1111233
Q ss_pred HHHHHHHHHHcccCCCc-EEeeCCCCCC---cCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc---------------hHH
Q 026125 139 EMLVHCRAVARGAKRPL-LVGDLPFGTY---ESSTNQAVDTAVRILKEGGMDAIKLEGGSPS---------------RIT 199 (243)
Q Consensus 139 eMi~h~~aV~Rga~~~f-vVaDmPfgsY---~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~---------------~~~ 199 (243)
.+++.+++|++..+.-| |.+++.-..+ ..+.+++++.+.++. +.|+|.|.+-++... ...
T Consensus 193 ~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~-~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ 271 (327)
T cd02803 193 FLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALE-EAGVDALHVSGGSYESPPPIIPPPYVPEGYFLE 271 (327)
T ss_pred HHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHH-HcCCCEEEeCCCCCcccccccCCCCCCcchhHH
Confidence 35677888888874332 4466653221 136888888887766 689999987555321 112
Q ss_pred HHHHHHHc-CCceeeccCCc-ccc
Q 026125 200 AARGIVEA-GIAVMGHVGLT-PQA 221 (243)
Q Consensus 200 ~i~~L~~~-GIPV~GHiGLt-PQ~ 221 (243)
.++.+.+. +|||++-=|+. |..
T Consensus 272 ~~~~ir~~~~iPVi~~Ggi~t~~~ 295 (327)
T cd02803 272 LAEKIKKAVKIPVIAVGGIRDPEV 295 (327)
T ss_pred HHHHHHHHCCCCEEEeCCCCCHHH
Confidence 33444443 79999876654 443
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.13 E-value=1.6 Score=41.01 Aligned_cols=96 Identities=21% Similarity=0.384 Sum_probs=56.3
Q ss_pred CHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 101 DYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 101 D~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
+...+..+-++|+|+|.+--+ +|.+ +..+...+.+++..|...|++ |+- .+.++| .+++
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~-----~G~~-------~~~~~~i~~ik~~~p~v~Vi~----G~v-~t~~~A----~~l~ 153 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSA-----HGHS-------VYVIEMIKFIKKKYPNVDVIA----GNV-VTAEAA----RDLI 153 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECC-----CCCc-------HHHHHHHHHHHHHCCCceEEE----CCC-CCHHHH----HHHH
Confidence 356677777899999865321 2333 334455566766555445555 344 467777 4555
Q ss_pred HHhCCCEEEeCCCC--------------Cc---hHHHHHHHHHcCCceeeccCCc
Q 026125 181 KEGGMDAIKLEGGS--------------PS---RITAARGIVEAGIAVMGHVGLT 218 (243)
Q Consensus 181 keaGAdaVKLEGg~--------------~~---~~~~i~~L~~~GIPV~GHiGLt 218 (243)
++|||+|++.+|. .. ...+.++..+.+|||++-=|+.
T Consensus 154 -~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~ 207 (325)
T cd00381 154 -DAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIR 207 (325)
T ss_pred -hcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCC
Confidence 6999999984331 00 1233333444589999765554
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.04 E-value=1.9 Score=42.86 Aligned_cols=88 Identities=17% Similarity=0.158 Sum_probs=57.3
Q ss_pred CcEEEE-ecCCHHHHHHHHHcCCCEEEeCcchhhh--hccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCC
Q 026125 92 EPITMV-TAYDYPSAVHLDSAGIDICLVGDSAAMV--VHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESS 168 (243)
Q Consensus 92 ~~Itml-TAYD~~sA~iae~AGiDiILVGDSlgmv--~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s 168 (243)
...+|. ++=++..|+-+.+||+|+|.||=.-|.. ..++-.-+ +..=+.++.|...++..+.| +|+| |++ .+
T Consensus 268 ~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~-~p~~~av~~~~~~~~~~~~~-via~---ggi-~~ 341 (479)
T PRK07807 268 GVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVG-RPQFSAVLECAAAARELGAH-VWAD---GGV-RH 341 (479)
T ss_pred CCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCc-hhHHHHHHHHHHHHHhcCCc-EEec---CCC-CC
Confidence 345566 8999999999999999999977544332 22322211 12223455555555555555 7888 455 36
Q ss_pred HHHHHHHHHHHHHHhCCCEEEe
Q 026125 169 TNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 169 ~e~Av~nA~Rl~keaGAdaVKL 190 (243)
+.++ .+.+ +.||++|.+
T Consensus 342 ~~~~----~~al-~~ga~~v~~ 358 (479)
T PRK07807 342 PRDV----ALAL-AAGASNVMI 358 (479)
T ss_pred HHHH----HHHH-HcCCCeeec
Confidence 7777 4667 489999987
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.90 E-value=1.4 Score=43.09 Aligned_cols=71 Identities=21% Similarity=0.424 Sum_probs=47.4
Q ss_pred cCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHH
Q 026125 99 AYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVR 178 (243)
Q Consensus 99 AYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~R 178 (243)
..|+..|..+-++|+|+|.|- + .+|+. +.++...+.+++-.+..+|++ |+- .+.+++ ..
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd-~----a~g~~-------~~~~~~i~~i~~~~~~~~vi~----G~v-~t~~~a----~~ 281 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVID-S----SHGHS-------IYVIDSIKEIKKTYPDLDIIA----GNV-ATAEQA----KA 281 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEE-C----CCCcH-------hHHHHHHHHHHHhCCCCCEEE----EeC-CCHHHH----HH
Confidence 367788899999999999873 2 23322 234455566766655555665 344 577877 45
Q ss_pred HHHHhCCCEEEeC
Q 026125 179 ILKEGGMDAIKLE 191 (243)
Q Consensus 179 l~keaGAdaVKLE 191 (243)
++ ++|||+|++-
T Consensus 282 l~-~aGad~i~vg 293 (450)
T TIGR01302 282 LI-DAGADGLRVG 293 (450)
T ss_pred HH-HhCCCEEEEC
Confidence 56 6999999974
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=91.82 E-value=1.2 Score=41.90 Aligned_cols=90 Identities=18% Similarity=0.253 Sum_probs=55.0
Q ss_pred CHHHHHHhhhC-CCcEEEEecCC-HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 80 TLTHLRQKHKN-GEPITMVTAYD-YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 80 tv~~Lr~~kk~-g~~ItmlTAYD-~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
++.++++-++. .-|+.-..=-+ +-.|.+++++|+|+| | .+..+-..||.++..| +--+.| ++
T Consensus 55 ~p~~I~~I~~~V~iPVig~~kigh~~Ea~~L~~~GvDiI---D---------eTe~lrPade~~~~~K---~~f~vp-fm 118 (287)
T TIGR00343 55 DPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYI---D---------ESEVLTPADWTFHIDK---KKFKVP-FV 118 (287)
T ss_pred CHHHHHHHHHhCCCCEEEEeeccHHHHHHHHHHcCCCEE---E---------ccCCCCcHHHHHHHHH---HHcCCC-EE
Confidence 55555554322 34544443333 889999999999999 4 2333444788776444 333333 56
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEE--EeCCCCCc
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAI--KLEGGSPS 196 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaV--KLEGg~~~ 196 (243)
+|- .|.++|+ |-+ +.|||.| |+|||...
T Consensus 119 ad~------~~l~EAl----rai-~~GadmI~Tt~e~gTg~ 148 (287)
T TIGR00343 119 CGA------RDLGEAL----RRI-NEGAAMIRTKGEAGTGN 148 (287)
T ss_pred ccC------CCHHHHH----HHH-HCCCCEEeccccCCCcc
Confidence 662 4778884 455 4689998 67777653
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=91.81 E-value=8.2 Score=35.68 Aligned_cols=120 Identities=12% Similarity=0.204 Sum_probs=79.8
Q ss_pred HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEe
Q 026125 84 LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVG 158 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVa 158 (243)
|+..++++--+...++||+.+++ +||+.+.++|+--..-..-..| .++.+...++++++.++ .| |+.
T Consensus 8 l~~A~~~~yav~Afn~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~~vp-v~l 79 (282)
T TIGR01859 8 LQKAKKEGYAVGAFNFNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMG-------GYKMAVAMVKTLIERMSIVP-VAL 79 (282)
T ss_pred HHHHHHCCceEEEEEECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccC-------cHHHHHHHHHHHHHHCCCCe-EEE
Confidence 55667788899999999999986 4688899999843211111111 14667788888888887 56 667
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCch-------HHHHHHHHHcCCceeeccCCcc
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSR-------ITAARGIVEAGIAVMGHVGLTP 219 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~-------~~~i~~L~~~GIPV~GHiGLtP 219 (243)
-+..+. +.+.. .+.+ ++|.+.|.+.+..... ..+++.....|++|-+=||-.+
T Consensus 80 hlDH~~---~~e~i----~~ai-~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~g 139 (282)
T TIGR01859 80 HLDHGS---SYESC----IKAI-KAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLG 139 (282)
T ss_pred ECCCCC---CHHHH----HHHH-HcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCc
Confidence 776643 23322 4456 4899999998874322 2333334567999997777765
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.77 E-value=5.7 Score=37.03 Aligned_cols=120 Identities=13% Similarity=0.214 Sum_probs=82.1
Q ss_pred HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 84 LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
|++.++++--+-..++||..+++ .||+.+.++|+--..-..-..| .++...++.+++-++-| |+.-
T Consensus 5 L~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~---------~~~~~~~~~~a~~~~vP-V~lH 74 (283)
T PRK08185 5 LKVAKEHQFAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLG---------DNFFAYVRERAKRSPVP-FVIH 74 (283)
T ss_pred HHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhcc---------HHHHHHHHHHHHHCCCC-EEEE
Confidence 56667888899999999999986 5788899999743222111122 23667777777777777 6788
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCcccc
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTPQA 221 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLtPQ~ 221 (243)
|..|. +.+.. .+.+ ++|.+.|.+.|.... +..+++..-..||+|-+=||.++..
T Consensus 75 LDHg~---~~e~i----~~ai-~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~ 135 (283)
T PRK08185 75 LDHGA---TIEDV----MRAI-RCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNT 135 (283)
T ss_pred CCCCC---CHHHH----HHHH-HcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCc
Confidence 88842 44444 3455 489999999887432 2233343456799999999887753
|
|
| >cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea | Back alignment and domain information |
|---|
Probab=91.73 E-value=1.6 Score=39.73 Aligned_cols=90 Identities=18% Similarity=0.115 Sum_probs=62.3
Q ss_pred CCcEEEEecCCHH----HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC-CC
Q 026125 91 GEPITMVTAYDYP----SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG-TY 165 (243)
Q Consensus 91 g~~ItmlTAYD~~----sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg-sY 165 (243)
++.|+-+++.+.. .|+.++++|+|.+++-=.. | ..+.+-+++..|.+.|.+ +.|+++=|.|.. ++
T Consensus 66 ~~vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P~------y--~~~~~~~~i~~yf~~v~~--~lpv~iYn~P~~tg~ 135 (279)
T cd00953 66 DKVIFQVGSLNLEESIELARAAKSFGIYAIASLPPY------Y--FPGIPEEWLIKYFTDISS--PYPTFIYNYPKATGY 135 (279)
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeCCc------C--CCCCCHHHHHHHHHHHHh--cCCEEEEeCccccCC
Confidence 3445555555443 5788999999999865222 1 112356889999999999 899999999963 35
Q ss_pred cCCHHHHHHHHHHHHHH-hCCCEEEeCCCC
Q 026125 166 ESSTNQAVDTAVRILKE-GGMDAIKLEGGS 194 (243)
Q Consensus 166 ~~s~e~Av~nA~Rl~ke-aGAdaVKLEGg~ 194 (243)
..+++.. .|+.++ -...+||-..+.
T Consensus 136 ~l~~~~l----~~L~~~~p~vvgiK~s~~d 161 (279)
T cd00953 136 DINARMA----KEIKKAGGDIIGVKDTNED 161 (279)
T ss_pred CCCHHHH----HHHHhcCCCEEEEEeCccC
Confidence 5676654 567654 478899988774
|
This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=91.70 E-value=3.2 Score=38.70 Aligned_cols=104 Identities=16% Similarity=0.200 Sum_probs=65.1
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEe--Cc---------chhhhh-ccCCCCccCCHHHHHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV--GD---------SAAMVV-HGHDTTLPITLEEMLVHC 144 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILV--GD---------Slgmv~-lG~~dT~~vTldeMi~h~ 144 (243)
+.+|..+|++..+. | ...|+.+.+||+|.|-+ |- ...+.- --|-....=-+.-.++..
T Consensus 137 ~~mt~~eI~~~i~~---------~-~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI 206 (338)
T cd04733 137 RAMTEEEIEDVIDR---------F-AHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIY 206 (338)
T ss_pred CcCCHHHHHHHHHH---------H-HHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHH
Confidence 45888888887542 1 24678899999999933 31 111110 001011222344467888
Q ss_pred HHHHcccCCCc-EEeeCCC-----CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 145 RAVARGAKRPL-LVGDLPF-----GTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 145 ~aV~Rga~~~f-vVaDmPf-----gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
++|+++++.-| |..|+.- +++ +.+++++-+.+|- +.|+|.|.+-+|
T Consensus 207 ~aIR~avG~d~~v~vris~~~~~~~g~--~~eea~~ia~~Le-~~Gvd~iev~~g 258 (338)
T cd04733 207 DAIRAAVGPGFPVGIKLNSADFQRGGF--TEEDALEVVEALE-EAGVDLVELSGG 258 (338)
T ss_pred HHHHHHcCCCCeEEEEEcHHHcCCCCC--CHHHHHHHHHHHH-HcCCCEEEecCC
Confidence 99999886543 4577741 344 6888888776655 689999987666
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=91.64 E-value=2 Score=41.03 Aligned_cols=98 Identities=17% Similarity=0.195 Sum_probs=64.5
Q ss_pred CCCHHHHHHhhh-CCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 78 RVTLTHLRQKHK-NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 78 ~~tv~~Lr~~kk-~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
.+|..+|..+++ -+.||++=..-+...|+.+.++|+|.|.|.+.-|... |..+.+++-+.+-.+++. ++..|
T Consensus 207 ~~~~~~l~~lr~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhGGr~l----d~~~~~~~~l~~i~~a~~---~~i~v 279 (351)
T cd04737 207 KLSPADIEFIAKISGLPVIVKGIQSPEDADVAINAGADGIWVSNHGGRQL----DGGPASFDSLPEIAEAVN---HRVPI 279 (351)
T ss_pred CCCHHHHHHHHHHhCCcEEEecCCCHHHHHHHHHcCCCEEEEeCCCCccC----CCCchHHHHHHHHHHHhC---CCCeE
Confidence 357777776643 3568777777888999999999999998765555443 344556654333333331 23447
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
++|=.+ .+..++ .+.+ ..||++|.+-
T Consensus 280 i~dGGI----r~g~Di----~kaL-alGA~~V~iG 305 (351)
T cd04737 280 IFDSGV----RRGEHV----FKAL-ASGADAVAVG 305 (351)
T ss_pred EEECCC----CCHHHH----HHHH-HcCCCEEEEC
Confidence 888544 366777 4566 4899999984
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.61 E-value=3.5 Score=39.68 Aligned_cols=76 Identities=14% Similarity=0.202 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHH
Q 026125 100 YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 100 YD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl 179 (243)
.....+..+.++|+|+|.+--......++++.. .++++....+. .+.|++.+| - .+.+.+ .++
T Consensus 142 ~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~---~~~~i~~~ik~----~~ipVIaG~-----V-~t~e~A----~~l 204 (368)
T PRK08649 142 RAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEG---EPLNLKEFIYE----LDVPVIVGG-----C-VTYTTA----LHL 204 (368)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCcC---CHHHHHHHHHH----CCCCEEEeC-----C-CCHHHH----HHH
Confidence 345778899999999998743332333443332 24444443333 455643334 2 356666 566
Q ss_pred HHHhCCCEEEeCCC
Q 026125 180 LKEGGMDAIKLEGG 193 (243)
Q Consensus 180 ~keaGAdaVKLEGg 193 (243)
+ ++|||+|++-.|
T Consensus 205 ~-~aGAD~V~VG~G 217 (368)
T PRK08649 205 M-RTGAAGVLVGIG 217 (368)
T ss_pred H-HcCCCEEEECCC
Confidence 6 599999998533
|
|
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=91.53 E-value=3.1 Score=37.86 Aligned_cols=88 Identities=25% Similarity=0.237 Sum_probs=51.2
Q ss_pred EEEEecCCH----HHHHHHHHcC-CCEEEeCcchhhhhc-cCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcC
Q 026125 94 ITMVTAYDY----PSAVHLDSAG-IDICLVGDSAAMVVH-GHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYES 167 (243)
Q Consensus 94 ItmlTAYD~----~sA~iae~AG-iDiILVGDSlgmv~l-G~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~ 167 (243)
|+-+..+|. ..|+.++++| +|.|=+-=|.-+... |+. ..-..+.+.+.+++|++.++.| |.+-+.-
T Consensus 95 i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~--~~~~~~~~~eiv~~vr~~~~~p-v~vKl~~----- 166 (301)
T PRK07259 95 IANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMA--FGTDPELAYEVVKAVKEVVKVP-VIVKLTP----- 166 (301)
T ss_pred EEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccc--cccCHHHHHHHHHHHHHhcCCC-EEEEcCC-----
Confidence 455556653 2466778889 999932111111112 111 1224567778888998887666 5677653
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEe
Q 026125 168 STNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 168 s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
+.++..+.|.++ +++|+|+|-+
T Consensus 167 ~~~~~~~~a~~l-~~~G~d~i~~ 188 (301)
T PRK07259 167 NVTDIVEIAKAA-EEAGADGLSL 188 (301)
T ss_pred CchhHHHHHHHH-HHcCCCEEEE
Confidence 234555555554 4799999865
|
|
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.53 E-value=2.9 Score=38.57 Aligned_cols=119 Identities=19% Similarity=0.186 Sum_probs=71.0
Q ss_pred CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCC-Cc-EE------eeCCC
Q 026125 91 GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR-PL-LV------GDLPF 162 (243)
Q Consensus 91 g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~-~f-vV------aDmPf 162 (243)
+.++.++. ....--..+-++|+|.+-+-+|++-... ..-...|.+|.+...+.+.+.++. -+ +. ..-||
T Consensus 72 ~~~~~~l~-~~~~~ie~A~~~g~~~v~i~~~~s~~~~--~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~ 148 (287)
T PRK05692 72 GVTYAALT-PNLKGLEAALAAGADEVAVFASASEAFS--QKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPY 148 (287)
T ss_pred CCeEEEEe-cCHHHHHHHHHcCCCEEEEEEecCHHHH--HHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCC
Confidence 45666654 3555556677899999876666643311 111235677755554444333321 11 21 35688
Q ss_pred CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc--CCceeec
Q 026125 163 GTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA--GIAVMGH 214 (243)
Q Consensus 163 gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~--GIPV~GH 214 (243)
.+. .+++..++.+.++. +.|||.|.|.|... ....+++.|.++ ++|+--|
T Consensus 149 ~~~-~~~~~~~~~~~~~~-~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H 205 (287)
T PRK05692 149 EGE-VPPEAVADVAERLF-ALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGH 205 (287)
T ss_pred CCC-CCHHHHHHHHHHHH-HcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 665 67888777777666 69999999998732 344566777654 2555444
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=91.52 E-value=1.4 Score=39.94 Aligned_cols=70 Identities=24% Similarity=0.186 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCCEEEe-CcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 102 YPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 102 ~~sA~iae~AGiDiILV-GDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
.-.|+..+++|+|+|.| -|. +--.=+ +.+.++|++.++.|++.-| | -.++.|+ ...
T Consensus 73 ~~~A~~~~~~GA~aisvlte~---------~~f~g~----~~~l~~v~~~v~iPvl~kd--f---i~~~~qi-----~~a 129 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDE---------RFFQGS----LEYLRAARAAVSLPVLRKD--F---IIDPYQI-----YEA 129 (260)
T ss_pred HHHHHHHHhCCCeEEEEeccc---------ccCCCC----HHHHHHHHHhcCCCEEeee--e---cCCHHHH-----HHH
Confidence 34678889999999976 110 000001 3455678888888977655 3 3455554 233
Q ss_pred HHhCCCEEEeCCCC
Q 026125 181 KEGGMDAIKLEGGS 194 (243)
Q Consensus 181 keaGAdaVKLEGg~ 194 (243)
.++|||+|-|-+..
T Consensus 130 ~~~GAD~VlLi~~~ 143 (260)
T PRK00278 130 RAAGADAILLIVAA 143 (260)
T ss_pred HHcCCCEEEEEecc
Confidence 47899999998764
|
|
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=91.44 E-value=9.6 Score=35.59 Aligned_cols=145 Identities=9% Similarity=0.076 Sum_probs=90.0
Q ss_pred CCHHH-HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCC
Q 026125 79 VTLTH-LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR 153 (243)
Q Consensus 79 ~tv~~-Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~ 153 (243)
+|..+ |++.++++--+-..++|+..+++ .||+.+.++||-......- ...++.+...++..++.++-
T Consensus 4 v~~k~ll~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~--------~~g~~~~~~~~~~~A~~~~v 75 (283)
T PRK07998 4 VNGRILLDRIQEKHVLAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNAQ--------LSGYDYIYEIVKRHADKMDV 75 (283)
T ss_pred CcHHHHHHHHHHCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHHh--------hCCHHHHHHHHHHHHHHCCC
Confidence 45555 44566777888999999999885 5788899999854222111 13356666777888887877
Q ss_pred CcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCch-------HHHHHHHHHcCCceeeccCCcccccc-cc
Q 026125 154 PLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSR-------ITAARGIVEAGIAVMGHVGLTPQAIS-VL 225 (243)
Q Consensus 154 ~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~-------~~~i~~L~~~GIPV~GHiGLtPQ~~~-~~ 225 (243)
| |+.-+..+ .+.|.. .+.+ ++|.++|.+.|+.... ..+++..-..|++|=|=||-+...-. ..
T Consensus 76 P-V~lHLDH~---~~~e~i----~~Ai-~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~ 146 (283)
T PRK07998 76 P-VSLHLDHG---KTFEDV----KQAV-RAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHV 146 (283)
T ss_pred C-EEEECcCC---CCHHHH----HHHH-HcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCcccccc
Confidence 7 66777663 244444 3445 4799999997764322 23455566789999555555443211 01
Q ss_pred cCccccccCHHhhccc
Q 026125 226 GGFRPQGKNVTSAVKV 241 (243)
Q Consensus 226 GGykvqGkt~~~A~~l 241 (243)
++ ...-.+.++|.++
T Consensus 147 ~~-~~~~T~pe~a~~F 161 (283)
T PRK07998 147 SE-ADCKTEPEKVKDF 161 (283)
T ss_pred cc-ccccCCHHHHHHH
Confidence 11 2233567777664
|
|
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=91.44 E-value=2.5 Score=40.10 Aligned_cols=84 Identities=18% Similarity=0.255 Sum_probs=53.3
Q ss_pred CCcEEEEe-cCCHHHHHHHHHcCCCEEEeCcchhhhh-------ccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC
Q 026125 91 GEPITMVT-AYDYPSAVHLDSAGIDICLVGDSAAMVV-------HGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF 162 (243)
Q Consensus 91 g~~ItmlT-AYD~~sA~iae~AGiDiILVGDSlgmv~-------lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf 162 (243)
..++++.. +-++..|+.+.++|+|.|.||-.-|..+ .|+++- .+.....++.+.+.| |++|=..
T Consensus 136 p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~-------~l~ai~ev~~a~~~p-VIadGGI 207 (321)
T TIGR01306 136 PDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGW-------QLAALRWCAKAARKP-IIADGGI 207 (321)
T ss_pred CCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCch-------HHHHHHHHHHhcCCe-EEEECCc
Confidence 34655555 7899999999999999999884333332 233321 123333444455444 8899655
Q ss_pred CCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 163 GTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 163 gsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
. +..++ .+.+ ..|||+|.+-
T Consensus 208 ---r-~~~Di----~KAL-a~GAd~Vmig 227 (321)
T TIGR01306 208 ---R-THGDI----AKSI-RFGASMVMIG 227 (321)
T ss_pred ---C-cHHHH----HHHH-HcCCCEEeec
Confidence 2 44566 4566 4799999873
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=91.36 E-value=2.8 Score=39.24 Aligned_cols=127 Identities=16% Similarity=0.133 Sum_probs=75.2
Q ss_pred cEEEEecCCH----HHHHHHHHcCCCEE-E-eCcchhhh-hccCCCCccCCHHHHHHHHHHHHcccC--CCcEEeeCCCC
Q 026125 93 PITMVTAYDY----PSAVHLDSAGIDIC-L-VGDSAAMV-VHGHDTTLPITLEEMLVHCRAVARGAK--RPLLVGDLPFG 163 (243)
Q Consensus 93 ~ItmlTAYD~----~sA~iae~AGiDiI-L-VGDSlgmv-~lG~~dT~~vTldeMi~h~~aV~Rga~--~~fvVaDmPfg 163 (243)
.++.+..-|. ..|+.++++|+|.| + .|=....+ -.|.-+...-..+-+...+++|++.++ .| |.+=+.-
T Consensus 65 ~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~p-VsvKiR~- 142 (312)
T PRK10550 65 VRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLP-VTVKVRL- 142 (312)
T ss_pred EEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcc-eEEEEEC-
Confidence 3455666663 24677889999999 3 44332222 233333344455667777888988875 45 4555444
Q ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc--------hHHHHHHHHHc-CCceeeccCC-cccccc
Q 026125 164 TYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS--------RITAARGIVEA-GIAVMGHVGL-TPQAIS 223 (243)
Q Consensus 164 sY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~--------~~~~i~~L~~~-GIPV~GHiGL-tPQ~~~ 223 (243)
++. +.+++++.|.. ++++|+|++.+-+.... ..+.|+.+.++ +|||+|==|+ +|+.+.
T Consensus 143 g~~-~~~~~~~~a~~-l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~ 210 (312)
T PRK10550 143 GWD-SGERKFEIADA-VQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQ 210 (312)
T ss_pred CCC-CchHHHHHHHH-HHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHH
Confidence 332 44556666654 55799999999765210 12335555553 6999986555 454443
|
|
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=91.35 E-value=9.6 Score=35.55 Aligned_cols=126 Identities=13% Similarity=0.200 Sum_probs=83.5
Q ss_pred CCHHH-HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc--
Q 026125 79 VTLTH-LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-- 151 (243)
Q Consensus 79 ~tv~~-Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-- 151 (243)
++..+ |+..++++--+-..++||+.+++ .||+.+.++|+--.....-. ...++.+...+++.++.+
T Consensus 4 v~~k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~-------~~g~~~~~~~~~~~a~~~~~ 76 (288)
T TIGR00167 4 VDVKELLQDAKEEGYAIPAFNINNLETINAVLEAAAEEKSPVIIQFSNGAAKY-------IAGLGAISAMVKAMSEAYPY 76 (288)
T ss_pred ccHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEECCcchhhc-------cCCHHHHHHHHHHHHHhccC
Confidence 45555 44566777889999999999984 57888999997432211111 022677777777777767
Q ss_pred CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCccc
Q 026125 152 KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTPQ 220 (243)
Q Consensus 152 ~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLtPQ 220 (243)
+-| |+.-|..+. +.|.. .+.+ +.|...|.+.|+..- +..+++.--..||+|=|=||-++.
T Consensus 77 ~VP-V~lHLDHg~---~~e~i----~~ai-~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg 143 (288)
T TIGR00167 77 GVP-VALHLDHGA---SEEDC----AQAV-KAGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGG 143 (288)
T ss_pred CCc-EEEECCCCC---CHHHH----HHHH-HcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccC
Confidence 556 677887732 44443 4456 489999999888432 223445455689999777777753
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.28 E-value=8.1 Score=36.00 Aligned_cols=126 Identities=17% Similarity=0.232 Sum_probs=88.0
Q ss_pred CCHHH-HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC
Q 026125 79 VTLTH-LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK 152 (243)
Q Consensus 79 ~tv~~-Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~ 152 (243)
+++.+ |+..++++--+-..++||+.+++ .||+.+.++|+ ++.+.. ....++.+...++..++.++
T Consensus 4 v~~~~~l~~A~~~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~---------~~~~~~~~~~~~~~~a~~~~ 74 (286)
T PRK06801 4 ISLANGLAHARKHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHF---------KYISLESLVEAVKFEAARHD 74 (286)
T ss_pred CcHHHHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchh---------hcCCHHHHHHHHHHHHHHCC
Confidence 45555 44566788889999999999986 56888999887 443321 12568889999999999888
Q ss_pred CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCccccc
Q 026125 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTPQAI 222 (243)
Q Consensus 153 ~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLtPQ~~ 222 (243)
-| |+.-+..+. +.+. + .+.+ ++|+++|.+.|.... ...+++..-..|++|-+=+|-+.|.-
T Consensus 75 vp-V~lHlDH~~---~~e~-i---~~Ai-~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e 142 (286)
T PRK06801 75 IP-VVLNLDHGL---HFEA-V---VRAL-RLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDE 142 (286)
T ss_pred CC-EEEECCCCC---CHHH-H---HHHH-HhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCC
Confidence 87 678888843 3333 3 3446 489999999776432 22334445588999987777776643
|
|
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=91.26 E-value=2.7 Score=38.85 Aligned_cols=115 Identities=21% Similarity=0.296 Sum_probs=72.7
Q ss_pred CcEEEEe--cCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCC--CcEEeeCCC-----
Q 026125 92 EPITMVT--AYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR--PLLVGDLPF----- 162 (243)
Q Consensus 92 ~~ItmlT--AYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~--~fvVaDmPf----- 162 (243)
-|+..=. +.|+...+.+=++||+.|..-.|- .+++|.+..++.|++-+.. .-|-+-+..
T Consensus 75 vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~------------l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~e 142 (282)
T TIGR01859 75 VPVALHLDHGSSYESCIKAIKAGFSSVMIDGSH------------LPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIE 142 (282)
T ss_pred CeEEEECCCCCCHHHHHHHHHcCCCEEEECCCC------------CCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCcc
Confidence 4544432 235667777778899988776443 4899999999998853321 112222211
Q ss_pred -------CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC---------CCchHHHHHHHHHc-CCceeecc--CCcccccc
Q 026125 163 -------GTYESSTNQAVDTAVRILKEGGMDAIKLEGG---------SPSRITAARGIVEA-GIAVMGHV--GLTPQAIS 223 (243)
Q Consensus 163 -------gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg---------~~~~~~~i~~L~~~-GIPV~GHi--GLtPQ~~~ 223 (243)
.+| .++|++ .+++++.|+|.+=+.=| ...-.+.++.|.++ +||++.|= |+.+....
T Consensus 143 d~~~g~~~~~-t~~eea----~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~ 217 (282)
T TIGR01859 143 DGVDEKEAEL-ADPDEA----EQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQIK 217 (282)
T ss_pred cccccccccc-CCHHHH----HHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHH
Confidence 356 589998 56776689999875411 11234556667665 79999998 77766543
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=91.23 E-value=10 Score=35.16 Aligned_cols=140 Identities=16% Similarity=0.187 Sum_probs=91.1
Q ss_pred HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEe
Q 026125 84 LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVa 158 (243)
|+..++++--+-..++||+.+++ .||+.+.++|+ +..+. .. ...++.+...++..++.++-| |..
T Consensus 5 L~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIi~~~~~~-~~--------~~~~~~~~~~~~~~a~~~~VP-V~l 74 (276)
T cd00947 5 LKKAREGGYAVGAFNINNLETLKAILEAAEETRSPVILQISEGA-IK--------YAGLELLVAMVKAAAERASVP-VAL 74 (276)
T ss_pred HHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcCcch-hh--------hCCHHHHHHHHHHHHHHCCCC-EEE
Confidence 55667788899999999999986 57888999887 43322 11 233777888888888888777 677
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCcccccccccCcccc
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQ 231 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLtPQ~~~~~GGykvq 231 (243)
-+..+ .+.+.. .+.+ ++|.+.|.+.|+... +..+++..-..||+|=|=||-++-.-....+-...
T Consensus 75 HLDH~---~~~~~i----~~ai-~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~ 146 (276)
T cd00947 75 HLDHG---SSFELI----KRAI-RAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGL 146 (276)
T ss_pred ECCCC---CCHHHH----HHHH-HhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccccccc
Confidence 77774 244554 3456 489999999888432 23445666678999977666665322111111112
Q ss_pred ccCHHhhccc
Q 026125 232 GKNVTSAVKV 241 (243)
Q Consensus 232 Gkt~~~A~~l 241 (243)
--+.++|++.
T Consensus 147 ~T~pe~a~~F 156 (276)
T cd00947 147 LTDPEEAEEF 156 (276)
T ss_pred CCCHHHHHHH
Confidence 2456666653
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=91.14 E-value=3.3 Score=40.15 Aligned_cols=97 Identities=18% Similarity=0.136 Sum_probs=67.2
Q ss_pred CCCHHHHHHhhhC-CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 78 RVTLTHLRQKHKN-GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 78 ~~tv~~Lr~~kk~-g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
.+|..+|+..++. +-||++=++-+...|+.+.++|+|.|.|+..-|-. .|+.+-|++-+.+-.+++. ++..|
T Consensus 239 ~~tW~~i~~lr~~~~~pvivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~----~d~~~~t~~~L~ei~~~~~---~~~~v 311 (383)
T cd03332 239 SLTWEDLAFLREWTDLPIVLKGILHPDDARRAVEAGVDGVVVSNHGGRQ----VDGSIAALDALPEIVEAVG---DRLTV 311 (383)
T ss_pred CCCHHHHHHHHHhcCCCEEEecCCCHHHHHHHHHCCCCEEEEcCCCCcC----CCCCcCHHHHHHHHHHHhc---CCCeE
Confidence 4788888777554 57888889999999999999999999887554422 3555556665555444442 12337
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
++|=.+ . +..+. .+.+ ..||++|-+
T Consensus 312 i~dGGI---r-~G~Dv----~KAL-aLGA~~v~i 336 (383)
T cd03332 312 LFDSGV---R-TGADI----MKAL-ALGAKAVLI 336 (383)
T ss_pred EEeCCc---C-cHHHH----HHHH-HcCCCEEEE
Confidence 788544 3 45565 3455 479999988
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=91.08 E-value=3.8 Score=39.53 Aligned_cols=91 Identities=20% Similarity=0.278 Sum_probs=55.5
Q ss_pred CCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcc----c--CCCcEEeeCCCC
Q 026125 90 NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARG----A--KRPLLVGDLPFG 163 (243)
Q Consensus 90 ~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rg----a--~~~fvVaDmPfg 163 (243)
-+-|+.+=.+.++..|+.+.++|+|.|++|-..+...-+.. ...+++.+.+..+.+.++- . ..-.||+|=.+
T Consensus 187 ~~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~~~~l-g~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI- 264 (369)
T TIGR01304 187 LDVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRLVL-GIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGI- 264 (369)
T ss_pred CCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCccccccc-CCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCC-
Confidence 34565543789999999888999999986643322111111 1235555555555554431 1 12348898544
Q ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 164 TYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 164 sY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
.+..+. .+.+ ..|||+|.+
T Consensus 265 ---~tg~di----~kAl-AlGAdaV~i 283 (369)
T TIGR01304 265 ---ETSGDL----VKAI-ACGADAVVL 283 (369)
T ss_pred ---CCHHHH----HHHH-HcCCCEeee
Confidence 366776 4566 489999988
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=91.03 E-value=3.7 Score=39.29 Aligned_cols=107 Identities=18% Similarity=0.166 Sum_probs=62.2
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEE-EeCcc---hhhhhcc-----CCCCccCCHH----HHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC-LVGDS---AAMVVHG-----HDTTLPITLE----EMLVH 143 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiI-LVGDS---lgmv~lG-----~~dT~~vTld----eMi~h 143 (243)
+.+|..++.+..+. | ...|+.|.+||||.| +=+.. |-.-.|- -.|--.=++| -.++.
T Consensus 138 ~~mt~~eI~~ii~~---------f-~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~ei 207 (382)
T cd02931 138 RELTTEEVETFVGK---------F-GESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEI 207 (382)
T ss_pred CcCCHHHHHHHHHH---------H-HHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHH
Confidence 56888888876542 1 246788999999999 42311 1111100 0111112344 35677
Q ss_pred HHHHHcccCCCcEE-e--eC------------C---CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 144 CRAVARGAKRPLLV-G--DL------------P---FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 144 ~~aV~Rga~~~fvV-a--Dm------------P---fgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
.++|++.++.-|.| . .. | |..-+.+.+++++-+.++. +.|+|.|.+.+|.
T Consensus 208 i~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~-~~gvD~l~vs~g~ 275 (382)
T cd02931 208 VEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILE-EAGYDALDVDAGS 275 (382)
T ss_pred HHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHH-HhCCCEEEeCCCC
Confidence 78888888655443 2 10 0 1111236889888876665 6899999998764
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
Probab=91.02 E-value=3.7 Score=38.32 Aligned_cols=106 Identities=17% Similarity=0.229 Sum_probs=60.2
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHccc----CC
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA----KR 153 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga----~~ 153 (243)
-+.-|+..+ +..-+++.-++|...|+...+||.|+|. +|=..+ -..|.++ ..|+||.+..++++.+++ |+
T Consensus 139 EVemi~~A~-~~gl~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~g-G~~Ga~~--~~sl~~a~~~~~~i~~aa~~v~~d 214 (268)
T PF09370_consen 139 EVEMIRKAH-EKGLFTTAYVFNEEQARAMAEAGADIIVAHMGLTTG-GSIGAKT--ALSLEEAAERIQEIFDAARAVNPD 214 (268)
T ss_dssp HHHHHHHHH-HTT-EE--EE-SHHHHHHHHHHT-SEEEEE-SS-------------S--HHHHHHHHHHHHHHHHCC-TT
T ss_pred HHHHHHHHH-HCCCeeeeeecCHHHHHHHHHcCCCEEEecCCccCC-CCcCccc--cCCHHHHHHHHHHHHHHHHHhCCC
Confidence 345566664 4568999999999999999999999996 332221 2344443 569999998888877644 55
Q ss_pred CcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC-CCEEEeCCCCCc
Q 026125 154 PLLVGDLPFGTYESSTNQAVDTAVRILKEGG-MDAIKLEGGSPS 196 (243)
Q Consensus 154 ~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG-AdaVKLEGg~~~ 196 (243)
.++++. |+--.+|+++ -.++++.. +++..-.-.-|+
T Consensus 215 ii~l~h---GGPI~~p~D~----~~~l~~t~~~~Gf~G~Ss~ER 251 (268)
T PF09370_consen 215 IIVLCH---GGPIATPEDA----QYVLRNTKGIHGFIGASSMER 251 (268)
T ss_dssp -EEEEE---CTTB-SHHHH----HHHHHH-TTEEEEEESTTTTH
T ss_pred eEEEEe---CCCCCCHHHH----HHHHhcCCCCCEEecccchhh
Confidence 655554 4444689998 55666665 788755444443
|
Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C. |
| >PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=91.00 E-value=1.8 Score=41.91 Aligned_cols=80 Identities=25% Similarity=0.385 Sum_probs=55.5
Q ss_pred HHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCC
Q 026125 106 VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGM 185 (243)
Q Consensus 106 ~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGA 185 (243)
.-.++||+|++-+- |.=.+-....+.|++..+.| +|+|.=| .| .-| ...+ +.|+
T Consensus 49 ~~L~~aGceiVRva---------------v~~~~~a~al~~I~~~~~iP-lvADIHF-d~----~lA----l~a~-~~G~ 102 (360)
T PRK00366 49 KRLARAGCEIVRVA---------------VPDMEAAAALPEIKKQLPVP-LVADIHF-DY----RLA----LAAA-EAGA 102 (360)
T ss_pred HHHHHcCCCEEEEc---------------cCCHHHHHhHHHHHHcCCCC-EEEecCC-CH----HHH----HHHH-HhCC
Confidence 34678888888543 11112245567788889888 7999988 55 344 4455 5899
Q ss_pred CEEEeCCCC-----CchHHHHHHHHHcCCce
Q 026125 186 DAIKLEGGS-----PSRITAARGIVEAGIAV 211 (243)
Q Consensus 186 daVKLEGg~-----~~~~~~i~~L~~~GIPV 211 (243)
|++.|--|. +....++++.-+.|||+
T Consensus 103 ~~iRINPGNig~~~~~v~~vv~~ak~~~ipI 133 (360)
T PRK00366 103 DALRINPGNIGKRDERVREVVEAAKDYGIPI 133 (360)
T ss_pred CEEEECCCCCCchHHHHHHHHHHHHHCCCCE
Confidence 999998773 23456778888899997
|
|
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=90.93 E-value=3.8 Score=39.50 Aligned_cols=98 Identities=15% Similarity=0.169 Sum_probs=66.2
Q ss_pred CCCHHHHHHhhh-CCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 78 RVTLTHLRQKHK-NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 78 ~~tv~~Lr~~kk-~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
..|+.+++..++ -+.||.+=.+-+...|+.+.++|+|.|.|...-|. ..|..+.|++-+.+-.+++.. ..+ |
T Consensus 209 ~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~GGr----~~d~~~~t~~~L~ev~~av~~--~ip-V 281 (364)
T PLN02535 209 SLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSNHGAR----QLDYSPATISVLEEVVQAVGG--RVP-V 281 (364)
T ss_pred CCCHHHHHHHHhccCCCEEEecCCCHHHHHHHHhcCCCEEEEeCCCcC----CCCCChHHHHHHHHHHHHHhc--CCC-E
Confidence 578888877643 24688887888899999999999999977655443 234455566555554444421 234 7
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
++|= +. .+..++ .+.+ ..||++|-+-
T Consensus 282 i~dG---GI-r~g~Dv----~KAL-alGA~aV~vG 307 (364)
T PLN02535 282 LLDG---GV-RRGTDV----FKAL-ALGAQAVLVG 307 (364)
T ss_pred EeeC---CC-CCHHHH----HHHH-HcCCCEEEEC
Confidence 7874 45 366777 4566 4899999884
|
|
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=90.90 E-value=7.8 Score=36.10 Aligned_cols=123 Identities=16% Similarity=0.262 Sum_probs=84.7
Q ss_pred CCHHHH-HHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC
Q 026125 79 VTLTHL-RQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK 152 (243)
Q Consensus 79 ~tv~~L-r~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~ 152 (243)
+++.++ +..++++--+-..++||+.+++ .||+.+.++|+ +..+. .-. ..++.+...++..++.++
T Consensus 4 v~~k~iL~~A~~~~yaV~AfNv~n~e~~~avi~AAee~~sPvIlq~~~~~-~~~--------~g~~~~~~~~~~~A~~~~ 74 (284)
T PRK12857 4 VTVAELLKKAEKGGYAVGAFNCNNMEIVQAIVAAAEAEKSPVIIQASQGA-IKY--------AGIEYISAMVRTAAEKAS 74 (284)
T ss_pred CcHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhH-hhh--------CCHHHHHHHHHHHHHHCC
Confidence 455554 4456677789999999999984 57888999987 43222 111 236667777888888887
Q ss_pred CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCcc
Q 026125 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTP 219 (243)
Q Consensus 153 ~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLtP 219 (243)
-| |+.-+..+. +.|.. .+.+ ++|...|.+.|+..- +..+++..-..||+|=|=||-++
T Consensus 75 VP-ValHLDH~~---~~e~i----~~ai-~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vg 139 (284)
T PRK12857 75 VP-VALHLDHGT---DFEQV----MKCI-RNGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIG 139 (284)
T ss_pred CC-EEEECCCCC---CHHHH----HHHH-HcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecC
Confidence 77 677887742 44443 4555 479999999888432 23445555579999987777766
|
|
| >PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=90.89 E-value=12 Score=34.05 Aligned_cols=115 Identities=13% Similarity=0.084 Sum_probs=77.8
Q ss_pred HHHHhhhCCCcEEE--EecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 83 HLRQKHKNGEPITM--VTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 83 ~Lr~~kk~g~~Itm--lTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
.|+++.++|++..- ++..+...+.++..+|+|.+.+=- -.++.+++++..+++++.. .+.+ .++=.
T Consensus 9 ~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~G~D~v~iD~----------EHg~~~~~~~~~~i~a~~~-~g~~-~lVRv 76 (256)
T PRK10558 9 KFKAALAAKQVQIGCWSALANPITTEVLGLAGFDWLVLDG----------EHAPNDVSTFIPQLMALKG-SASA-PVVRV 76 (256)
T ss_pred HHHHHHHcCCceEEEEEcCCCcHHHHHHHhcCCCEEEEcc----------ccCCCCHHHHHHHHHHHhh-cCCC-cEEEC
Confidence 37888888888654 456889999999999999998751 1246788888888887754 4333 34555
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHH-HHcCCceeeccCCccc
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGI-VEAGIAVMGHVGLTPQ 220 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L-~~~GIPV~GHiGLtPQ 220 (243)
|... +... .|.+ +.||++|-+--=. ..++ ++.+ ...--|=.|.=|+-|-
T Consensus 77 p~~~----~~~i----~r~L-D~Ga~giivP~v~-tae~-a~~~v~a~kypP~G~Rg~~~~ 126 (256)
T PRK10558 77 PTNE----PVII----KRLL-DIGFYNFLIPFVE-TAEE-ARRAVASTRYPPEGIRGVSVS 126 (256)
T ss_pred CCCC----HHHH----HHHh-CCCCCeeeecCcC-CHHH-HHHHHHHcCCCCCCcCCCCcc
Confidence 6533 3333 5677 6899999876443 3444 3444 3455677788777663
|
|
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=90.87 E-value=2.8 Score=40.40 Aligned_cols=96 Identities=14% Similarity=0.129 Sum_probs=63.3
Q ss_pred CCCHHHHHHhhh-CCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 78 RVTLTHLRQKHK-NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 78 ~~tv~~Lr~~kk-~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
..++.+++..++ -+.|+++=.+-+...|+.+.++|+|.|.|+..-|-.. |..+-+++-+.. +++..+.+ |
T Consensus 222 ~~~w~~i~~ir~~~~~pviiKgV~~~eda~~a~~~G~d~I~VSnhGGrql----d~~~~~~~~L~e----i~~~~~~~-v 292 (361)
T cd04736 222 SFNWQDLRWLRDLWPHKLLVKGIVTAEDAKRCIELGADGVILSNHGGRQL----DDAIAPIEALAE----IVAATYKP-V 292 (361)
T ss_pred cCCHHHHHHHHHhCCCCEEEecCCCHHHHHHHHHCCcCEEEECCCCcCCC----cCCccHHHHHHH----HHHHhCCe-E
Confidence 356666655432 2468888899999999999999999998875444332 222334544443 44444444 7
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
++|= ++. +..++ .+.+ ..||++|-+-
T Consensus 293 i~dG---GIr-~g~Dv----~KAL-aLGA~aV~iG 318 (361)
T cd04736 293 LIDS---GIR-RGSDI----VKAL-ALGANAVLLG 318 (361)
T ss_pred EEeC---CCC-CHHHH----HHHH-HcCCCEEEEC
Confidence 8884 553 66777 3566 4899999883
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=90.85 E-value=10 Score=35.03 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=79.3
Q ss_pred HHHHhhhCCCcEEE--EecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 83 HLRQKHKNGEPITM--VTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 83 ~Lr~~kk~g~~Itm--lTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
.|+++.++|++..- ++-.+...+.++..+|+|.+++=- -..+.+++++...+++++. ...+ .++=.
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~GfD~v~iD~----------EHg~~~~~~l~~~i~a~~~-~g~~-~lVRv 75 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDG----------EHAPNTIQDLYHQLQAIAP-YASQ-PVIRP 75 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHHHcCCCEEEEcc----------ccCCCCHHHHHHHHHHHHh-cCCC-eEEEC
Confidence 47888888888654 566889999999999999998751 2247889998888888864 4333 35566
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHH-HcCCceeeccCCccc
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIV-EAGIAVMGHVGLTPQ 220 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~-~~GIPV~GHiGLtPQ 220 (243)
|..++ ... .|.+ +.||++|-+--=. ..++ ++.++ ..--|-.|.=|+-|.
T Consensus 76 p~~~~----~~i----~r~L-D~GA~GIivP~V~-saee-A~~~V~a~rYpP~G~Rg~g~~ 125 (267)
T PRK10128 76 VEGSK----PLI----KQVL-DIGAQTLLIPMVD-TAEQ-ARQVVSATRYPPYGERGVGAS 125 (267)
T ss_pred CCCCH----HHH----HHHh-CCCCCeeEecCcC-CHHH-HHHHHHhcCCCCCCCCCCCCc
Confidence 76443 333 5777 6999999886543 3344 34444 445788888777654
|
|
| >cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV | Back alignment and domain information |
|---|
Probab=90.77 E-value=5.1 Score=38.39 Aligned_cols=125 Identities=19% Similarity=0.235 Sum_probs=76.7
Q ss_pred CCCHHHHHHhh-hCCCcEEEEecCCH-------HHHHHHH---HcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHH
Q 026125 78 RVTLTHLRQKH-KNGEPITMVTAYDY-------PSAVHLD---SAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRA 146 (243)
Q Consensus 78 ~~tv~~Lr~~k-k~g~~ItmlTAYD~-------~sA~iae---~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~a 146 (243)
+.-+.-+|++. ..++|++ .|..+. ..|++++ ++|+|.|..--+++. --..+++|=+..++.
T Consensus 115 ~fGi~g~R~~~gv~~rPli-~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge-------~~~~~~eER~~~v~~ 186 (367)
T cd08205 115 RFGIEGLRRLLGVHDRPLL-GTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLAD-------QPYAPFEERVRACME 186 (367)
T ss_pred CCCchhHHHHhCCCCCCee-eeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccC-------cccCCHHHHHHHHHH
Confidence 35566666653 3357764 444332 3455555 459999965444433 335688997766665
Q ss_pred HHcccC-----CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHH-HcCCceeeccCC
Q 026125 147 VARGAK-----RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIV-EAGIAVMGHVGL 217 (243)
Q Consensus 147 V~Rga~-----~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~-~~GIPV~GHiGL 217 (243)
+++.++ .++++++.- .+.++.+++|.... +.|||+|.+--...-... .+.|. +.++|+++|--.
T Consensus 187 av~~a~~~TG~~~~y~~nit-----~~~~e~i~~a~~a~-~~Gad~vmv~~~~~g~~~-~~~l~~~~~lpi~~H~a~ 256 (367)
T cd08205 187 AVRRANEETGRKTLYAPNIT-----GDPDELRRRADRAV-EAGANALLINPNLVGLDA-LRALAEDPDLPIMAHPAF 256 (367)
T ss_pred HHHHHHHhhCCcceEEEEcC-----CCHHHHHHHHHHHH-HcCCCEEEEecccccccH-HHHHHhcCCCeEEEccCc
Confidence 554433 466667652 24589999997665 699999998755332111 23333 458999999765
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=90.75 E-value=2.1 Score=41.19 Aligned_cols=101 Identities=20% Similarity=0.350 Sum_probs=63.3
Q ss_pred EEecCC--HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHH
Q 026125 96 MVTAYD--YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAV 173 (243)
Q Consensus 96 mlTAYD--~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av 173 (243)
.+...| +..+..+-+||+|+|++--+ +| ..+.++..++.+++.-|+.+||+. .- .+.|.+
T Consensus 102 avg~~~~~~er~~~L~~agvD~ivID~a-----~g-------~s~~~~~~ik~ik~~~~~~~viaG----NV-~T~e~a- 163 (352)
T PF00478_consen 102 AVGTRDDDFERAEALVEAGVDVIVIDSA-----HG-------HSEHVIDMIKKIKKKFPDVPVIAG----NV-VTYEGA- 163 (352)
T ss_dssp EEESSTCHHHHHHHHHHTT-SEEEEE-S-----ST-------TSHHHHHHHHHHHHHSTTSEEEEE----EE--SHHHH-
T ss_pred EecCCHHHHHHHHHHHHcCCCEEEcccc-----Cc-------cHHHHHHHHHHHHHhCCCceEEec----cc-CCHHHH-
Confidence 345555 77888888899999987411 22 234567778899999987667743 33 466666
Q ss_pred HHHHHHHHHhCCCEEEeCCCCCc-----------------hHHHHHHHHHcCCceeeccCCc
Q 026125 174 DTAVRILKEGGMDAIKLEGGSPS-----------------RITAARGIVEAGIAVMGHVGLT 218 (243)
Q Consensus 174 ~nA~Rl~keaGAdaVKLEGg~~~-----------------~~~~i~~L~~~GIPV~GHiGLt 218 (243)
..|+ ++|||+||+==|... +.++.++..+.||||++.=|+.
T Consensus 164 ---~~L~-~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~ 221 (352)
T PF00478_consen 164 ---KDLI-DAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIR 221 (352)
T ss_dssp ---HHHH-HTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-S
T ss_pred ---HHHH-HcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCceeecCCcC
Confidence 4577 599999999633211 1233455556789998875553
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PF00463 ICL: Isocitrate lyase family; InterPro: IPR000918 Isocitrate lyase (4 | Back alignment and domain information |
|---|
Probab=90.61 E-value=0.75 Score=46.36 Aligned_cols=102 Identities=13% Similarity=0.113 Sum_probs=57.3
Q ss_pred hCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhh-----hhccCCCCccCCHHHHHHHHHHHHccc------------
Q 026125 89 KNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAM-----VVHGHDTTLPITLEEMLVHCRAVARGA------------ 151 (243)
Q Consensus 89 k~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgm-----v~lG~~dT~~vTldeMi~h~~aV~Rga------------ 151 (243)
+++.+....++.|......+. +|.+.|.|..+.-. +--=+||-..-..+-+-..++.|-++-
T Consensus 55 ~~~~~~~t~g~~~p~~~~q~~-~~l~~iYvSGWq~ss~~s~~~e~~PD~s~YP~~tVP~~V~ri~~aq~~~D~~q~~~~~ 133 (526)
T PF00463_consen 55 KNGYVSHTGGATDPQQVQQMA-KGLEAIYVSGWQCSSDASTSNEPYPDQSDYPYDTVPNKVERIFNAQLRHDRKQWEERL 133 (526)
T ss_dssp SSSSEEEEBBSSHHHHHHHHH-CT-SSEEE-HHHHHHHS-TT-S--SSSS-S-TTHHHHHHHHHHHHHHHHHHHHHHCTC
T ss_pred hcCCcceecccccHHHHHHHH-hcCCeEEeeceeeecccccCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 346777777888887777665 69999976554322 123356655555544433333332210
Q ss_pred ---C-----------CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 152 ---K-----------RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 152 ---~-----------~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
+ ...||+|-.- +| .++..+++-+..++ |+||.+|++||-.
T Consensus 134 ~~~~~~r~~~~~~Dyl~PIIADad~-Gf-GG~~~v~kL~K~fi-EaGaAgiH~EDQ~ 187 (526)
T PF00463_consen 134 SMTKEERAKTPYIDYLRPIIADADA-GF-GGLTAVMKLTKLFI-EAGAAGIHFEDQL 187 (526)
T ss_dssp STTSTTHTTS--S-SS--EEEE-TT-TS-SSHHHHHHHHHHHH-HHT-SEEEEESB-
T ss_pred cccchhhcccCcccceeeeeecccc-CC-CCHHHHHHHHHHHH-hcCCceechhhcc
Confidence 0 1357866655 55 36788888887777 7999999999874
|
1.3.1 from EC) [, ] is an enzyme that catalyzes the conversion of isocitrate to succinate and glyoxylate. This is the first step in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. A cysteine, a histidine and a glutamate or aspartate have been found to be important for the enzyme's catalytic activity. Only one cysteine residue is conserved between the sequences of the fungal, plant and bacterial enzymes; it is located in the middle of a conserved hexapeptide. Other enzymes also belong to this family including carboxyvinyl-carboxyphosphonate phosphorylmutase (2.7.8.23 from EC) which catalyses the conversion of 1-carboxyvinyl carboxyphosphonate to 3-(hydrohydroxyphosphoryl) pyruvate carbon dioxide, and phosphoenolpyruvate mutase (5.4.2.9 from EC), which is involved in the biosynthesis of phosphinothricin tripeptide antiobiotics. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1IGW_D 3P0X_B 3EOL_B 3E5B_B 3OQ8_D 3LG3_A 3I4E_D 1F8I_B 1F8M_D 1F61_A .... |
| >TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family | Back alignment and domain information |
|---|
Probab=90.51 E-value=6.4 Score=35.12 Aligned_cols=100 Identities=12% Similarity=0.158 Sum_probs=67.2
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEE--EeCcchhhhhccCCCCccCCHHHHHHHHHHHHc-ccCCCcEE
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC--LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR-GAKRPLLV 157 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiI--LVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~R-ga~~~fvV 157 (243)
+.-++.+.+.|-++.+-.+|+...|.+|.++|+|.| .|| .+ --+|.+ .++.+....+.++. +.+..++.
T Consensus 91 l~A~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~aGa~yispyvg-Ri--~d~g~d-----g~~~v~~~~~~~~~~~~~tkIla 162 (213)
T TIGR00875 91 LKAVKILKKEGIKTNVTLVFSAAQALLAAKAGATYVSPFVG-RL--DDIGGD-----GMKLIEEVKTIFENHAPDTEVIA 162 (213)
T ss_pred HHHHHHHHHCCCceeEEEecCHHHHHHHHHcCCCEEEeecc-hH--HHcCCC-----HHHHHHHHHHHHHHcCCCCEEEE
Confidence 666778888999999999999999999999999988 477 22 122332 23333333333333 34555444
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHH
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIV 205 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~ 205 (243)
+ |+ .|+++. .++. .+|+|.|-+- +++++.|.
T Consensus 163 A-----S~-r~~~~v----~~~~-~~G~d~vTip------~~vl~~l~ 193 (213)
T TIGR00875 163 A-----SV-RHPRHV----LEAA-LIGADIATMP------LDVMQQLF 193 (213)
T ss_pred e-----cc-CCHHHH----HHHH-HcCCCEEEcC------HHHHHHHH
Confidence 4 67 588888 4455 4899999885 45566664
|
This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth. |
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=90.41 E-value=9.3 Score=35.64 Aligned_cols=104 Identities=19% Similarity=0.150 Sum_probs=57.9
Q ss_pred HHHHHHhhhCCCc-EEEEecCC--------HHHHHHHHHcC--CCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHc
Q 026125 81 LTHLRQKHKNGEP-ITMVTAYD--------YPSAVHLDSAG--IDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR 149 (243)
Q Consensus 81 v~~Lr~~kk~g~~-ItmlTAYD--------~~sA~iae~AG--iDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~R 149 (243)
+.++++.+..+.| |+-+...+ --.+..+++++ +|.|-+--|--++. |... .-..+.+.+.+++|++
T Consensus 118 ~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~-g~~~--~~~~~~~~~iv~av~~ 194 (327)
T cd04738 118 AKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTP-GLRD--LQGKEALRELLTAVKE 194 (327)
T ss_pred HHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCC-cccc--ccCHHHHHHHHHHHHH
Confidence 3445443322333 34455555 33666677766 89885543333321 2111 2344556667788887
Q ss_pred ccC-----CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 026125 150 GAK-----RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (243)
Q Consensus 150 ga~-----~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEG 192 (243)
.++ .| |.+=++. + .+.++..+-|.. +.++|||+|.+-+
T Consensus 195 ~~~~~~~~~P-v~vKl~~--~-~~~~~~~~ia~~-l~~aGad~I~~~n 237 (327)
T cd04738 195 ERNKLGKKVP-LLVKIAP--D-LSDEELEDIADV-ALEHGVDGIIATN 237 (327)
T ss_pred HHhhcccCCC-eEEEeCC--C-CCHHHHHHHHHH-HHHcCCcEEEEEC
Confidence 765 56 4555553 2 245566555544 5579999999765
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=90.34 E-value=4.2 Score=40.39 Aligned_cols=88 Identities=15% Similarity=0.105 Sum_probs=55.8
Q ss_pred cEEEEe-cCCHHHHHHHHHcCCCEEEeCcchhhhh--ccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCH
Q 026125 93 PITMVT-AYDYPSAVHLDSAGIDICLVGDSAAMVV--HGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESST 169 (243)
Q Consensus 93 ~ItmlT-AYD~~sA~iae~AGiDiILVGDSlgmv~--lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~ 169 (243)
..+|.. +-++..|+.+.++|+|.|-||-.-|..+ -++.+-+.-++.- +..|...++..+.+ +|+|= ++ .++
T Consensus 267 ~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a-~~~~~~~~~~~~~~-viadG---gi-~~~ 340 (475)
T TIGR01303 267 VPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSA-VLECAAEARKLGGH-VWADG---GV-RHP 340 (475)
T ss_pred CeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHH-HHHHHHHHHHcCCc-EEEeC---CC-CCH
Confidence 345555 9999999999999999998886655533 2222222223333 33343333444444 89984 55 367
Q ss_pred HHHHHHHHHHHHHhCCCEEEeC
Q 026125 170 NQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 170 e~Av~nA~Rl~keaGAdaVKLE 191 (243)
.+. .+.+ .+||++|.+-
T Consensus 341 ~di----~kal-a~GA~~vm~g 357 (475)
T TIGR01303 341 RDV----ALAL-AAGASNVMVG 357 (475)
T ss_pred HHH----HHHH-HcCCCEEeec
Confidence 777 4566 4899999873
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PRK01362 putative translaldolase; Provisional | Back alignment and domain information |
|---|
Probab=90.34 E-value=7.4 Score=34.77 Aligned_cols=101 Identities=14% Similarity=0.187 Sum_probs=66.0
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEE--EeCcchhhhhccCCCCccCCHHHHHHHHHHHHc-ccCCCcEE
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC--LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR-GAKRPLLV 157 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiI--LVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~R-ga~~~fvV 157 (243)
+.-++.++++|-++.+-.+|+...|.+|.++|+|.| .+| .+.. .|.+ .++.+....+.+++ +.+..++.
T Consensus 91 ~~a~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~aGa~yispyvg-Ri~d--~g~d-----g~~~i~~~~~~~~~~~~~tkila 162 (214)
T PRK01362 91 LKAVKALSKEGIKTNVTLIFSANQALLAAKAGATYVSPFVG-RLDD--IGTD-----GMELIEDIREIYDNYGFDTEIIA 162 (214)
T ss_pred HHHHHHHHHCCCceEEeeecCHHHHHHHHhcCCcEEEeecc-hHhh--cCCC-----HHHHHHHHHHHHHHcCCCcEEEE
Confidence 666778888999999999999999999999999988 477 2211 2222 33333333333333 32333333
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHH
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE 206 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~ 206 (243)
+ |+ .|+++. .++. .+|||.+-+- +++.+.|.+
T Consensus 163 A-----S~-r~~~~v----~~~~-~~G~d~iTi~------~~vl~~l~~ 194 (214)
T PRK01362 163 A-----SV-RHPMHV----LEAA-LAGADIATIP------YKVIKQLFK 194 (214)
T ss_pred e-----ec-CCHHHH----HHHH-HcCCCEEecC------HHHHHHHHc
Confidence 4 67 588888 4555 4899999875 445566654
|
|
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=90.26 E-value=7.3 Score=36.83 Aligned_cols=109 Identities=13% Similarity=0.041 Sum_probs=69.4
Q ss_pred CCCcEEEEec---CCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCc
Q 026125 90 NGEPITMVTA---YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYE 166 (243)
Q Consensus 90 ~g~~ItmlTA---YD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~ 166 (243)
.+.++.++.. ++......+.++|+|.|-+.+...- .+....+++.+++.--. +.+.+-. ++.
T Consensus 76 ~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e------------~~~~~~~i~~ak~~G~~--v~~~l~~-a~~ 140 (337)
T PRK08195 76 KQAKIAALLLPGIGTVDDLKMAYDAGVRVVRVATHCTE------------ADVSEQHIGLARELGMD--TVGFLMM-SHM 140 (337)
T ss_pred CCCEEEEEeccCcccHHHHHHHHHcCCCEEEEEEecch------------HHHHHHHHHHHHHCCCe--EEEEEEe-ccC
Confidence 4467766433 3667778888999999977653311 24556777776643211 2333333 344
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc---CCceeec
Q 026125 167 SSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA---GIAVMGH 214 (243)
Q Consensus 167 ~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~---GIPV~GH 214 (243)
.+++..++.+.++. +.||+.|.|-|... ....++++|.++ +||+--|
T Consensus 141 ~~~e~l~~~a~~~~-~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H 195 (337)
T PRK08195 141 APPEKLAEQAKLME-SYGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFH 195 (337)
T ss_pred CCHHHHHHHHHHHH-hCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 57888888776655 79999999999832 344566777665 5776555
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=90.15 E-value=7.7 Score=35.59 Aligned_cols=117 Identities=18% Similarity=0.191 Sum_probs=72.4
Q ss_pred CcEEEEecCCH------HHHHHHHHcCCCEEEeCcchhh-hhcc-------CCC-CccCCHHHHHHHHHHHHcccCCCcE
Q 026125 92 EPITMVTAYDY------PSAVHLDSAGIDICLVGDSAAM-VVHG-------HDT-TLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 92 ~~ItmlTAYD~------~sA~iae~AGiDiILVGDSlgm-v~lG-------~~d-T~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
.-|.-+|+=|. ..++..+++|+|+|=+|-..+- +.-| ... -..+|+++.+..++.+++-.+.|++
T Consensus 16 ali~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~v 95 (263)
T CHL00200 16 ALIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIV 95 (263)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEE
Confidence 45667777552 2366678899999965532211 0000 000 2356888999999999876555633
Q ss_pred EeeCCCCCCcCCHH-H-HHHHHHHHHHHhCCCEEEeCCCC-CchHHHHHHHHHcCCceeec
Q 026125 157 VGDLPFGTYESSTN-Q-AVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVMGH 214 (243)
Q Consensus 157 VaDmPfgsY~~s~e-~-Av~nA~Rl~keaGAdaVKLEGg~-~~~~~~i~~L~~~GIPV~GH 214 (243)
+++| .|+- + .+++-.+..+++|+|+|-+-|=. ++...+++.+.+.||..+-=
T Consensus 96 -----lm~Y-~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~l 150 (263)
T CHL00200 96 -----IFTY-YNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILL 150 (263)
T ss_pred -----EEec-ccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3455 3442 2 34444666678999999998753 33456667778888765543
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.07 E-value=3.1 Score=40.95 Aligned_cols=72 Identities=29% Similarity=0.451 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHH
Q 026125 100 YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 100 YD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl 179 (243)
.++..+...-++|+|+|.+- +. +|+. +.++...+.+++-.+...|++ |+- .+.+++ .++
T Consensus 228 ~~~e~a~~L~~agvdvivvD-~a----~g~~-------~~vl~~i~~i~~~~p~~~vi~----g~v-~t~e~a----~~l 286 (486)
T PRK05567 228 DNEERAEALVEAGVDVLVVD-TA----HGHS-------EGVLDRVREIKAKYPDVQIIA----GNV-ATAEAA----RAL 286 (486)
T ss_pred chHHHHHHHHHhCCCEEEEE-CC----CCcc-------hhHHHHHHHHHhhCCCCCEEE----ecc-CCHHHH----HHH
Confidence 45677888889999977542 22 2332 345666677777664444444 333 577777 456
Q ss_pred HHHhCCCEEEeCCC
Q 026125 180 LKEGGMDAIKLEGG 193 (243)
Q Consensus 180 ~keaGAdaVKLEGg 193 (243)
+ ++|||+|++-+|
T Consensus 287 ~-~aGad~i~vg~g 299 (486)
T PRK05567 287 I-EAGADAVKVGIG 299 (486)
T ss_pred H-HcCCCEEEECCC
Confidence 6 699999998433
|
|
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=90.04 E-value=5 Score=35.87 Aligned_cols=95 Identities=20% Similarity=0.218 Sum_probs=62.6
Q ss_pred HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCC
Q 026125 107 HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGM 185 (243)
Q Consensus 107 iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGA 185 (243)
...+.|+|.|++..+.|= -..+|.+|-..-++.+++.++ +..|++.... .+.+++++.|... ++.||
T Consensus 26 ~l~~~Gv~gi~~~GstGE-------~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~----~~~~~~i~~a~~a-~~~Ga 93 (281)
T cd00408 26 FLIEAGVDGLVVLGTTGE-------APTLTDEERKEVIEAVVEAVAGRVPVIAGVGA----NSTREAIELARHA-EEAGA 93 (281)
T ss_pred HHHHcCCCEEEECCCCcc-------cccCCHHHHHHHHHHHHHHhCCCCeEEEecCC----ccHHHHHHHHHHH-HHcCC
Confidence 345569999987766643 236788998877777777654 3345655432 3678898888655 47999
Q ss_pred CEEEeCCCC------CchHHHHHHHHH-cCCceee
Q 026125 186 DAIKLEGGS------PSRITAARGIVE-AGIAVMG 213 (243)
Q Consensus 186 daVKLEGg~------~~~~~~i~~L~~-~GIPV~G 213 (243)
|+|-+---. +......+.+.+ .++||+=
T Consensus 94 d~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~i 128 (281)
T cd00408 94 DGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVIL 128 (281)
T ss_pred CEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 999885431 122333455666 4799984
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=90.02 E-value=7.7 Score=36.89 Aligned_cols=95 Identities=15% Similarity=0.297 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHcCC--CEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEe-eCCCCCCcCCHHHHHHHH
Q 026125 100 YDYPSAVHLDSAGI--DICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG-DLPFGTYESSTNQAVDTA 176 (243)
Q Consensus 100 YD~~sA~iae~AGi--DiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVa-DmPfgsY~~s~e~Av~nA 176 (243)
-|+..+...-+||+ |+|.+--+. |+. +.+.+..+.|++-.|..+|++ |.- |.|++
T Consensus 97 ~~~~~~~~Lv~ag~~~d~i~iD~a~-----gh~-------~~~~e~I~~ir~~~p~~~vi~g~V~------t~e~a---- 154 (326)
T PRK05458 97 DEYDFVDQLAAEGLTPEYITIDIAH-----GHS-------DSVINMIQHIKKHLPETFVIAGNVG------TPEAV---- 154 (326)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCC-----Cch-------HHHHHHHHHHHhhCCCCeEEEEecC------CHHHH----
Confidence 56678888888865 999872111 222 223444567888888666775 642 66776
Q ss_pred HHHHHHhCCCEEEeCCCCCc---------------hHHHHHHHHH-cCCceeeccCC
Q 026125 177 VRILKEGGMDAIKLEGGSPS---------------RITAARGIVE-AGIAVMGHVGL 217 (243)
Q Consensus 177 ~Rl~keaGAdaVKLEGg~~~---------------~~~~i~~L~~-~GIPV~GHiGL 217 (243)
.+++ ++|||++++-++... ....++.+.+ ..|||++-=|+
T Consensus 155 ~~l~-~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGGI 210 (326)
T PRK05458 155 RELE-NAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGI 210 (326)
T ss_pred HHHH-HcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEeCCC
Confidence 5566 699999996533221 1223455554 36888876554
|
|
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.99 E-value=5.4 Score=37.15 Aligned_cols=111 Identities=16% Similarity=0.238 Sum_probs=72.8
Q ss_pred CCCcEEEE--ecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc---CCCc--EEeeCCC
Q 026125 90 NGEPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA---KRPL--LVGDLPF 162 (243)
Q Consensus 90 ~g~~Itml--TAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga---~~~f--vVaDmPf 162 (243)
..-|+++= -+.|+...+-+=++||+-+.+-.| ..+++|-+..++.|++-+ .-++ =++-++.
T Consensus 67 ~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S------------~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~ 134 (283)
T PRK08185 67 SPVPFVIHLDHGATIEDVMRAIRCGFTSVMIDGS------------LLPYEENVALTKEVVELAHKVGVSVEGELGTIGN 134 (283)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCC------------CCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccC
Confidence 44564443 456777788888889998877644 358999999999988422 2221 1122221
Q ss_pred ---C-----C---CcCCHHHHHHHHHHHHHHhCCCEEEe---------CCC--CCchHHHHHHHHHc-CCceeeccCC
Q 026125 163 ---G-----T---YESSTNQAVDTAVRILKEGGMDAIKL---------EGG--SPSRITAARGIVEA-GIAVMGHVGL 217 (243)
Q Consensus 163 ---g-----s---Y~~s~e~Av~nA~Rl~keaGAdaVKL---------EGg--~~~~~~~i~~L~~~-GIPV~GHiGL 217 (243)
+ + | .++++| .+++++.|+|++=+ +++ .....+.++.|.++ +||++-|=|-
T Consensus 135 ~e~~~~~~~~~~~~-t~peea----~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~iPLVlHGgs 207 (283)
T PRK08185 135 TGTSIEGGVSEIIY-TDPEQA----EDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVDIPLVLHGGS 207 (283)
T ss_pred cccccccccccccC-CCHHHH----HHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhCCCEEEECCC
Confidence 1 1 5 488888 68888889999888 332 22345567777766 8999999554
|
|
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=89.94 E-value=3.6 Score=38.32 Aligned_cols=88 Identities=16% Similarity=0.236 Sum_probs=54.2
Q ss_pred HHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEe-CcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCC
Q 026125 83 HLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (243)
Q Consensus 83 ~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILV-GDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmP 161 (243)
.++..|+.|. .++..+.+...|+.++++|+|+|.+ |--. -||... .+. +...+.|++..+.| |+++=
T Consensus 101 ~i~~lk~~g~-~v~~~v~s~~~a~~a~~~GaD~Ivv~g~ea----gGh~g~--~~~---~~ll~~v~~~~~iP-viaaG- 168 (307)
T TIGR03151 101 YIPRLKENGV-KVIPVVASVALAKRMEKAGADAVIAEGMES----GGHIGE--LTT---MALVPQVVDAVSIP-VIAAG- 168 (307)
T ss_pred HHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEEECccc----CCCCCC--CcH---HHHHHHHHHHhCCC-EEEEC-
Confidence 3445555554 4677889999999999999998864 5322 233211 111 33445566666667 55553
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 162 FGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 162 fgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
+. .+.+++ ...+. .|||+|.+
T Consensus 169 --GI-~~~~~~----~~al~-~GA~gV~i 189 (307)
T TIGR03151 169 --GI-ADGRGM----AAAFA-LGAEAVQM 189 (307)
T ss_pred --CC-CCHHHH----HHHHH-cCCCEeec
Confidence 44 355655 44553 79999987
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=89.83 E-value=10 Score=34.66 Aligned_cols=123 Identities=19% Similarity=0.216 Sum_probs=69.6
Q ss_pred HHHhhhCCC--cEEEEecCC--HH----HHHHHHHcCCCEEEeCcchhh---------hhccCCCCccCCHHHHHHHHHH
Q 026125 84 LRQKHKNGE--PITMVTAYD--YP----SAVHLDSAGIDICLVGDSAAM---------VVHGHDTTLPITLEEMLVHCRA 146 (243)
Q Consensus 84 Lr~~kk~g~--~ItmlTAYD--~~----sA~iae~AGiDiILVGDSlgm---------v~lG~~dT~~vTldeMi~h~~a 146 (243)
|++.+++++ .|.-+|+=| .. .+...++.|+|+|=+|-..+- -..-..=-..+++++.+...+.
T Consensus 3 ~~~~~~~~~~~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~ 82 (258)
T PRK13111 3 FAALKAEGRKALIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVRE 82 (258)
T ss_pred hHHHHhcCCccEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344444444 455556633 22 255677899999976643311 0000000123588888999999
Q ss_pred HH-cccCCCcEEeeCCCCCCcCCH-HH-HHHHHHHHHHHhCCCEEEeCCCC-CchHHHHHHHHHcCCcee
Q 026125 147 VA-RGAKRPLLVGDLPFGTYESST-NQ-AVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVM 212 (243)
Q Consensus 147 V~-Rga~~~fvVaDmPfgsY~~s~-e~-Av~nA~Rl~keaGAdaVKLEGg~-~~~~~~i~~L~~~GIPV~ 212 (243)
++ +..+.|++ +++|- |+ .+ .++.-.+.++++|+|++-+-|=. ++....++++.+.|+..+
T Consensus 83 ~r~~~~~~p~v-----lm~Y~-N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I 146 (258)
T PRK13111 83 IREKDPTIPIV-----LMTYY-NPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLI 146 (258)
T ss_pred HHhcCCCCCEE-----EEecc-cHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEE
Confidence 98 54555643 22442 32 12 34444667778999999997743 223455566667776665
|
|
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=89.79 E-value=4.2 Score=40.11 Aligned_cols=96 Identities=20% Similarity=0.168 Sum_probs=58.8
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG 184 (243)
-..+-++|+|++-+-|++.-+- .++++ ++.+++.-...-+....-++.+ .+++..++.|.++. +.|
T Consensus 102 v~~A~~~Gvd~irif~~lnd~~---------n~~~~---v~~ak~~G~~v~~~i~~t~~p~-~~~~~~~~~a~~l~-~~G 167 (448)
T PRK12331 102 VQKSVENGIDIIRIFDALNDVR---------NLETA---VKATKKAGGHAQVAISYTTSPV-HTIDYFVKLAKEMQ-EMG 167 (448)
T ss_pred HHHHHHCCCCEEEEEEecCcHH---------HHHHH---HHHHHHcCCeEEEEEEeecCCC-CCHHHHHHHHHHHH-HcC
Confidence 3556788999999998885541 14443 3444332111111122223344 47888888888776 699
Q ss_pred CCEEEeCCCCC-----chHHHHHHHHHc-CCceeec
Q 026125 185 MDAIKLEGGSP-----SRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 185 AdaVKLEGg~~-----~~~~~i~~L~~~-GIPV~GH 214 (243)
||.|.|-|-.. .+..+|++|.++ ++|+--|
T Consensus 168 ad~I~i~Dt~G~l~P~~v~~lv~alk~~~~~pi~~H 203 (448)
T PRK12331 168 ADSICIKDMAGILTPYVAYELVKRIKEAVTVPLEVH 203 (448)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 99999998743 244556666553 6777666
|
|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=89.65 E-value=4.2 Score=35.32 Aligned_cols=84 Identities=17% Similarity=0.151 Sum_probs=43.7
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE---ee---CCCCCCcCCHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV---GD---LPFGTYESSTNQAVDTAV 177 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV---aD---mPfgsY~~s~e~Av~nA~ 177 (243)
.|+.++++|+..+.++ ++ ...++|++.++.||+. -| .||--| .+.+++
T Consensus 28 ~a~a~~~~G~~~~~~~----------------~~----~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~-~~~~~v----- 81 (221)
T PRK01130 28 MALAAVQGGAVGIRAN----------------GV----EDIKAIRAVVDVPIIGIIKRDYPDSEVYIT-PTLKEV----- 81 (221)
T ss_pred HHHHHHHCCCeEEEcC----------------CH----HHHHHHHHhCCCCEEEEEecCCCCCCceEC-CCHHHH-----
Confidence 4566777777766653 11 2334555556666541 13 234233 133333
Q ss_pred HHHHHhCCCEEEeCCCC------CchHHHHHHHHH-cCCceee
Q 026125 178 RILKEGGMDAIKLEGGS------PSRITAARGIVE-AGIAVMG 213 (243)
Q Consensus 178 Rl~keaGAdaVKLEGg~------~~~~~~i~~L~~-~GIPV~G 213 (243)
+..+++|||.|-+-... +....+++++.+ .|+|++.
T Consensus 82 ~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~ 124 (221)
T PRK01130 82 DALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMA 124 (221)
T ss_pred HHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEE
Confidence 33346777777663321 234455666666 6777663
|
|
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=89.54 E-value=7.5 Score=38.80 Aligned_cols=116 Identities=20% Similarity=0.242 Sum_probs=74.2
Q ss_pred HHHHHHhhhCCCcEEEEec---------C--C--HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHH
Q 026125 81 LTHLRQKHKNGEPITMVTA---------Y--D--YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAV 147 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTA---------Y--D--~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV 147 (243)
+..+++.. .+.+|.|+.- | | ..+-+.+.+.|+|++-|.|++ -.++-|..+++++
T Consensus 75 lr~~r~~~-~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~l------------nd~~n~~~ai~~a 141 (468)
T PRK12581 75 LRTLKKGL-PNTRLQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDAL------------NDPRNIQQALRAV 141 (468)
T ss_pred HHHHHHhC-CCCceeeeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcccC------------CCHHHHHHHHHHH
Confidence 55666654 4567777743 2 3 123677788999999999977 2567788888888
Q ss_pred HcccCCC-cEE--eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc-CCceeec
Q 026125 148 ARGAKRP-LLV--GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 148 ~Rga~~~-fvV--aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~-GIPV~GH 214 (243)
++.-... +.+ .+-| . -+.+-.++.|.++. +.|||.|.|-|-.. .+..++++|.+. ++|+--|
T Consensus 142 k~~G~~~~~~i~yt~sp---~-~t~~y~~~~a~~l~-~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~~~~pi~~H 212 (468)
T PRK12581 142 KKTGKEAQLCIAYTTSP---V-HTLNYYLSLVKELV-EMGADSICIKDMAGILTPKAAKELVSGIKAMTNLPLIVH 212 (468)
T ss_pred HHcCCEEEEEEEEEeCC---c-CcHHHHHHHHHHHH-HcCCCEEEECCCCCCcCHHHHHHHHHHHHhccCCeEEEE
Confidence 7633221 111 2222 1 24555777777666 69999999998733 244566777654 4777666
|
|
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=89.51 E-value=7.7 Score=33.59 Aligned_cols=78 Identities=23% Similarity=0.205 Sum_probs=45.6
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEE-eeCCCCCCcCCHHHHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLV-GDLPFGTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvV-aDmPfgsY~~s~e~Av~nA~Rl~ke 182 (243)
+.-|-+.|+|.|-+-=..|...-| ..+++.....+|++.+. .|+.+ ..++. . + ++-+..|.|+..|
T Consensus 75 ve~A~~~GAdevdvv~~~g~~~~~-------~~~~~~~ei~~v~~~~~g~~lkvI~e~~~--l--~-~~~i~~a~ria~e 142 (203)
T cd00959 75 AREAIADGADEIDMVINIGALKSG-------DYEAVYEEIAAVVEACGGAPLKVILETGL--L--T-DEEIIKACEIAIE 142 (203)
T ss_pred HHHHHHcCCCEEEEeecHHHHhCC-------CHHHHHHHHHHHHHhcCCCeEEEEEecCC--C--C-HHHHHHHHHHHHH
Confidence 455667799988432222221111 33556666666766654 33322 34333 2 4 3457777888889
Q ss_pred hCCCEEEeCCCC
Q 026125 183 GGMDAIKLEGGS 194 (243)
Q Consensus 183 aGAdaVKLEGg~ 194 (243)
+|||.||..-|.
T Consensus 143 ~GaD~IKTsTG~ 154 (203)
T cd00959 143 AGADFIKTSTGF 154 (203)
T ss_pred hCCCEEEcCCCC
Confidence 999999998553
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=89.44 E-value=16 Score=34.18 Aligned_cols=147 Identities=8% Similarity=0.073 Sum_probs=90.1
Q ss_pred CCHHH-HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-
Q 026125 79 VTLTH-LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK- 152 (243)
Q Consensus 79 ~tv~~-Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~- 152 (243)
+++.+ |+..++++--+-..++||..+++ .||+.+.++|+--..-..-. - ..++.+...+++.++..+
T Consensus 4 v~~~~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~---~----~~~~~~~~~~~~~a~~~~~ 76 (285)
T PRK07709 4 VSMKEMLNKALEGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARH---M----TGFKTVVAMVKALIEEMNI 76 (285)
T ss_pred CcHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcchhhh---c----CCHHHHHHHHHHHHHHcCC
Confidence 45555 45567788889999999999985 57888999987331111111 0 235556666677766554
Q ss_pred -CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCccccccc
Q 026125 153 -RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTPQAISV 224 (243)
Q Consensus 153 -~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLtPQ~~~~ 224 (243)
-| |+.-+..+. +.+.+ .+.+ ++|.+.|.+.|+..- +-.+++..-..||+|=|=||-++..-.-
T Consensus 77 ~VP-V~lHLDHg~---~~e~i----~~ai-~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~ 147 (285)
T PRK07709 77 TVP-VAIHLDHGS---SFEKC----KEAI-DAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDD 147 (285)
T ss_pred CCc-EEEECCCCC---CHHHH----HHHH-HcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCC
Confidence 35 678887732 44554 4667 489999999888432 2234555556799998777777643211
Q ss_pred ccCccccccCHHhhccc
Q 026125 225 LGGFRPQGKNVTSAVKV 241 (243)
Q Consensus 225 ~GGykvqGkt~~~A~~l 241 (243)
..+-..--.+.|+|+++
T Consensus 148 ~~~~~~~yT~peeA~~F 164 (285)
T PRK07709 148 VIAEGVIYADPAECKHL 164 (285)
T ss_pred cccccccCCCHHHHHHH
Confidence 00001112567777664
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=89.42 E-value=2.3 Score=40.94 Aligned_cols=70 Identities=11% Similarity=0.193 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHc--CCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHH
Q 026125 100 YDYPSAVHLDSA--GIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAV 177 (243)
Q Consensus 100 YD~~sA~iae~A--GiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~ 177 (243)
-|+..+...-++ |+|.|.+- +.+||.. -++...+.|++-.|.++|++. .- .++|+| .
T Consensus 107 ~d~er~~~L~~a~~~~d~iviD-----~AhGhs~-------~~i~~ik~ir~~~p~~~viaG----NV-~T~e~a----~ 165 (343)
T TIGR01305 107 NDLEKMTSILEAVPQLKFICLD-----VANGYSE-------HFVEFVKLVREAFPEHTIMAG----NV-VTGEMV----E 165 (343)
T ss_pred HHHHHHHHHHhcCCCCCEEEEE-----CCCCcHH-------HHHHHHHHHHhhCCCCeEEEe----cc-cCHHHH----H
Confidence 566677766677 59999874 2355544 356677788888888888864 34 577887 5
Q ss_pred HHHHHhCCCEEEeC
Q 026125 178 RILKEGGMDAIKLE 191 (243)
Q Consensus 178 Rl~keaGAdaVKLE 191 (243)
+++ ++|||+||+-
T Consensus 166 ~Li-~aGAD~ikVg 178 (343)
T TIGR01305 166 ELI-LSGADIVKVG 178 (343)
T ss_pred HHH-HcCCCEEEEc
Confidence 666 6999999975
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=89.42 E-value=8.5 Score=36.49 Aligned_cols=115 Identities=12% Similarity=0.043 Sum_probs=69.2
Q ss_pred CcEEEEecCCHHHHHHHHHcCCCEEEeCcchhh----hhccCCCCccCCHHHHHHHHHH-HHcccCC-CcEEeeCCCCCC
Q 026125 92 EPITMVTAYDYPSAVHLDSAGIDICLVGDSAAM----VVHGHDTTLPITLEEMLVHCRA-VARGAKR-PLLVGDLPFGTY 165 (243)
Q Consensus 92 ~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgm----v~lG~~dT~~vTldeMi~h~~a-V~Rga~~-~fvVaDmPfgsY 165 (243)
.+++++.-.+..-...+.++|+|.|-+-.+.+- ..+| .|.+|++..+.. |..+... ..+..+.++.+.
T Consensus 65 ~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~------~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r 138 (365)
T TIGR02660 65 ARLMAWCRARDADIEAAARCGVDAVHISIPVSDLQIEAKLR------KDRAWVLERLARLVSFARDRGLFVSVGGEDASR 138 (365)
T ss_pred cEEEEEcCCCHHHHHHHHcCCcCEEEEEEccCHHHHHHHhC------cCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCC
Confidence 455665545666677788899998855544431 2222 345665543322 2211111 124577888655
Q ss_pred cCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc-CCceeec
Q 026125 166 ESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 166 ~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~-GIPV~GH 214 (243)
.+++..++.+.++. +.||+.|.|-|-.. ....+++.|.+. ++|+--|
T Consensus 139 -~~~~~l~~~~~~~~-~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~v~l~~H 191 (365)
T TIGR02660 139 -ADPDFLVELAEVAA-EAGADRFRFADTVGILDPFSTYELVRALRQAVDLPLEMH 191 (365)
T ss_pred -CCHHHHHHHHHHHH-HcCcCEEEEcccCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 68888888777665 69999999998632 344556777654 5665444
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=89.31 E-value=7.5 Score=37.02 Aligned_cols=100 Identities=17% Similarity=0.157 Sum_probs=62.6
Q ss_pred CCHHHHHHhhh-CCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 79 VTLTHLRQKHK-NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 79 ~tv~~Lr~~kk-~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
.+..+++..++ -+.||.+=++-+...|+.+.++|+|.|.|...-|+.. |...-|++-+..-.+.+....+.-.|+
T Consensus 200 ~~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~~----d~~~~~~~~L~~i~~~~~~~~~~~~vi 275 (344)
T cd02922 200 LTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQL----DTAPAPIEVLLEIRKHCPEVFDKIEVY 275 (344)
T ss_pred CCHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHcCCCEEEEECCCcccC----CCCCCHHHHHHHHHHHHHHhCCCceEE
Confidence 56677776654 3468888899999999999999999998776666653 222334332222212121111223377
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
+|= +. .+..++ .+.+ ..||++|-+-
T Consensus 276 ~~G---GI-r~G~Dv----~kal-aLGA~aV~iG 300 (344)
T cd02922 276 VDG---GV-RRGTDV----LKAL-CLGAKAVGLG 300 (344)
T ss_pred EeC---CC-CCHHHH----HHHH-HcCCCEEEEC
Confidence 874 44 356777 4566 4899999884
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=89.27 E-value=5.1 Score=36.77 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=53.7
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
.+..+|+.. ..+++.-+.+++...|.-+.++|+|.|+.| +++.|++-.-++.+.. +.|++..
T Consensus 171 ~v~~~r~~~-~~~~~Igvev~s~eea~~A~~~gaDyI~ld--------------~~~~e~l~~~~~~~~~--~ipi~Ai- 232 (268)
T cd01572 171 AVRRARAAA-PFTLKIEVEVETLEQLKEALEAGADIIMLD--------------NMSPEELREAVALLKG--RVLLEAS- 232 (268)
T ss_pred HHHHHHHhC-CCCCeEEEEECCHHHHHHHHHcCCCEEEEC--------------CcCHHHHHHHHHHcCC--CCcEEEE-
Confidence 455666653 335678999999999999999999999997 3456665443333321 2343222
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
|+ .|++++ ..+. ++|+|+|-+
T Consensus 233 ---GG--I~~~ni----~~~a-~~Gvd~Iav 253 (268)
T cd01572 233 ---GG--ITLENI----RAYA-ETGVDYISV 253 (268)
T ss_pred ---CC--CCHHHH----HHHH-HcCCCEEEE
Confidence 22 355554 5555 589999865
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=89.23 E-value=5.2 Score=38.68 Aligned_cols=98 Identities=17% Similarity=0.161 Sum_probs=65.8
Q ss_pred CCCHHHHHHhhhC-CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 78 RVTLTHLRQKHKN-GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 78 ~~tv~~Lr~~kk~-g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
.+|..+|+.+++. +-||++=..-+...|..+.++|+|.|.|+-.-|... |..+.+++.+..-.+++. +...|
T Consensus 214 ~~~w~~i~~l~~~~~~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGGrq~----~~~~a~~~~L~ei~~av~---~~i~v 286 (367)
T TIGR02708 214 KLSPRDIEEIAGYSGLPVYVKGPQCPEDADRALKAGASGIWVTNHGGRQL----DGGPAAFDSLQEVAEAVD---KRVPI 286 (367)
T ss_pred CCCHHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHcCcCEEEECCcCccCC----CCCCcHHHHHHHHHHHhC---CCCcE
Confidence 4677888776543 568888888889999999999999987765555333 334556665544333331 22337
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
++|=.. .+..++ .+.+. .||++|-+-
T Consensus 287 i~dGGI----r~g~Dv----~KaLa-lGAd~V~ig 312 (367)
T TIGR02708 287 VFDSGV----RRGQHV----FKALA-SGADLVALG 312 (367)
T ss_pred EeeCCc----CCHHHH----HHHHH-cCCCEEEEc
Confidence 888544 356777 45663 899999873
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=89.20 E-value=17 Score=32.94 Aligned_cols=127 Identities=12% Similarity=0.167 Sum_probs=72.2
Q ss_pred HHHHhhhCCCcEEEEecCCHHH---H-HHHHHcCCCEE-E-eCcchh-hhhccCCCCccCCHHHHHHHHHHHHcccCCCc
Q 026125 83 HLRQKHKNGEPITMVTAYDYPS---A-VHLDSAGIDIC-L-VGDSAA-MVVHGHDTTLPITLEEMLVHCRAVARGAKRPL 155 (243)
Q Consensus 83 ~Lr~~kk~g~~ItmlTAYD~~s---A-~iae~AGiDiI-L-VGDSlg-mv~lG~~dT~~vTldeMi~h~~aV~Rga~~~f 155 (243)
.+.+.++....++-+..-|... + ..+++ ++|+| + +|=... ++-.|+-..+.-..+-+...+++|+. .+.|
T Consensus 60 e~~~~~~~~~vivnv~~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~-~~~P- 136 (231)
T TIGR00736 60 QIKKAESRALVSVNVRFVDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE-LNKP- 136 (231)
T ss_pred HHHHHhhcCCEEEEEecCCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-CCCc-
Confidence 3445543444444444434433 2 33433 78888 3 443332 12223333334455666777778874 4556
Q ss_pred EEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc----hHHHHHHHHHc--CCceeeccC
Q 026125 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS----RITAARGIVEA--GIAVMGHVG 216 (243)
Q Consensus 156 vVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~----~~~~i~~L~~~--GIPV~GHiG 216 (243)
|.+=+.-+ + +.++.++.|.++. ++|||+|.++..... ....|+.+.++ .|||+|==|
T Consensus 137 VsvKiR~~-~--~~~~~~~~a~~l~-~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGg 199 (231)
T TIGR00736 137 IFVKIRGN-C--IPLDELIDALNLV-DDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGNNS 199 (231)
T ss_pred EEEEeCCC-C--CcchHHHHHHHHH-HcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEECC
Confidence 55555542 2 3355666666555 799999999866531 34668888887 499998533
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=89.09 E-value=7.5 Score=39.64 Aligned_cols=117 Identities=18% Similarity=0.239 Sum_probs=72.3
Q ss_pred HHHHHHhhhCCCcEEEEec------C-----C--HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHH
Q 026125 81 LTHLRQKHKNGEPITMVTA------Y-----D--YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAV 147 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTA------Y-----D--~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV 147 (243)
+..|++.. .+.++.|+.= | | ..+-+.+-++|+|++-+-|++.-+ +.|....+.+
T Consensus 61 l~~l~~~~-~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~------------~n~~~~i~~a 127 (582)
T TIGR01108 61 LRELKKAL-PNTPLQMLLRGQNLLGYRHYADDVVERFVKKAVENGMDVFRIFDALNDP------------RNLQAAIQAA 127 (582)
T ss_pred HHHHHHhC-CCCEEEEEEccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHH
Confidence 44454432 4578888731 2 2 123466778899999999888542 4566666666
Q ss_pred HcccCCCcEEe--eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc-CCceeec
Q 026125 148 ARGAKRPLLVG--DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 148 ~Rga~~~fvVa--DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~-GIPV~GH 214 (243)
+..- .- +.+ .+-|..| .+++..++.+.++. ++|||.|.|-|-.. .+..++++|.+. ++|+--|
T Consensus 128 k~~G-~~-v~~~i~~t~~p~-~~~~~~~~~~~~~~-~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~~pi~~H 198 (582)
T TIGR01108 128 KKHG-AH-AQGTISYTTSPV-HTLETYLDLAEELL-EMGVDSICIKDMAGILTPKAAYELVSALKKRFGLPVHLH 198 (582)
T ss_pred HHcC-CE-EEEEEEeccCCC-CCHHHHHHHHHHHH-HcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCCCceEEE
Confidence 5422 21 222 2223334 37788888887776 69999999998732 344566777654 5776555
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=89.09 E-value=18 Score=33.67 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=78.9
Q ss_pred CCHHH-HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-
Q 026125 79 VTLTH-LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA- 151 (243)
Q Consensus 79 ~tv~~-Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga- 151 (243)
++..+ |++.++++--+-..++|++.+++ .||+.+.++|| +..+. .-.+| .++.+...++.+.+..
T Consensus 4 v~~~~~l~~A~~~~yav~AfN~~n~e~~~avi~aAe~~~sPvIlq~s~~~-~~~~~-------~~~~~~~~~~~~a~~~~ 75 (293)
T PRK07315 4 VSAEKFVQAARDNGYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMGA-AKYMG-------GYKVCKNLIENLVESMG 75 (293)
T ss_pred CcHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccH-HhhcC-------cHHHHHHHHHHHHHHcC
Confidence 45555 45566777789999999999984 57888999997 43322 11112 1445566666666655
Q ss_pred -CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCc
Q 026125 152 -KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLT 218 (243)
Q Consensus 152 -~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLt 218 (243)
+-| |+.-+..+++ +.. .+.+ ++|.+.|.+.+.... +..+++..-..|++|-+=+|-+
T Consensus 76 ~~vP-V~lHLDH~~~----~~i----~~ai-~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i 140 (293)
T PRK07315 76 ITVP-VAIHLDHGHY----EDA----LECI-EVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTI 140 (293)
T ss_pred CCCc-EEEECCCCCH----HHH----HHHH-HcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcc
Confidence 345 6788888643 322 3456 489999999887432 2233333445899999988844
|
|
| >PRK12653 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=89.07 E-value=10 Score=34.05 Aligned_cols=101 Identities=16% Similarity=0.276 Sum_probs=66.4
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHc-ccCCCcEE
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR-GAKRPLLV 157 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~R-ga~~~fvV 157 (243)
+.-++.+.++|-++.+-.+|+...|.+|.++|+|.|. || .+. -+|.+ .++.+....+.+++ +.+..++.
T Consensus 93 l~A~~~L~~~GI~vn~T~vfs~~Qa~~Aa~aGa~yIspyvg-R~~--~~g~d-----g~~~i~~i~~~~~~~~~~tkILa 164 (220)
T PRK12653 93 LAAIKMLKAEGIPTLGTAVYGAAQGLLSALAGAEYVAPYVN-RID--AQGGS-----GIQTVTDLQQLLKMHAPQAKVLA 164 (220)
T ss_pred HHHHHHHHHcCCCeeEEEecCHHHHHHHHhcCCcEEEeecC-hHh--hcCCC-----hHHHHHHHHHHHHhcCCCcEEEE
Confidence 6667788889999999999999999999999999984 66 221 12222 33333333333433 33434333
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHH
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE 206 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~ 206 (243)
+ |+ .|+++.+ +.+ ..|+|.+-+- +++++.|.+
T Consensus 165 A-----S~-r~~~~v~----~~~-~~G~d~vTip------~~vl~~l~~ 196 (220)
T PRK12653 165 A-----SF-KTPRQAL----DCL-LAGCESITLP------LDVAQQMIS 196 (220)
T ss_pred E-----ec-CCHHHHH----HHH-HcCCCEEECC------HHHHHHHHc
Confidence 3 67 5889985 445 3899999885 445666654
|
|
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=89.00 E-value=6.6 Score=37.51 Aligned_cols=117 Identities=16% Similarity=0.083 Sum_probs=68.1
Q ss_pred EEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-C-CcEEeeCCCCCCcCCHHH
Q 026125 94 ITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-R-PLLVGDLPFGTYESSTNQ 171 (243)
Q Consensus 94 ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~-~fvVaDmPfgsY~~s~e~ 171 (243)
+.+++-........+-++|+|.|-+..+.+-..+ ..-...|.+|.+..+....+-+. . ..+..+.++.+. .+++.
T Consensus 70 i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~h~--~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r-~~~~~ 146 (378)
T PRK11858 70 ILALNRAVKSDIDASIDCGVDAVHIFIATSDIHI--KHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASR-TDLDF 146 (378)
T ss_pred EEEEcccCHHHHHHHHhCCcCEEEEEEcCCHHHH--HHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCC-CCHHH
Confidence 3444433355566777899998865555433211 01123456776654443333211 1 225577888665 68888
Q ss_pred HHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc-CCceeec
Q 026125 172 AVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 172 Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~-GIPV~GH 214 (243)
.++-+.++. +.||+.|.|-|-.. ....+++.|.++ ++|+--|
T Consensus 147 l~~~~~~~~-~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H 194 (378)
T PRK11858 147 LIEFAKAAE-EAGADRVRFCDTVGILDPFTMYELVKELVEAVDIPIEVH 194 (378)
T ss_pred HHHHHHHHH-hCCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 887776655 79999999988632 244556666654 5665444
|
|
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.91 E-value=6 Score=37.65 Aligned_cols=137 Identities=8% Similarity=0.019 Sum_probs=76.1
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchh----hhhccC----CCCccCCHHH----HHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAA----MVVHGH----DTTLPITLEE----MLVHC 144 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlg----mv~lG~----~dT~~vTlde----Mi~h~ 144 (243)
+.+|..++.+..++ | ...|+.|.+||||.|-+--.-| ..+--+ .|-=.=++|. .++..
T Consensus 147 ~~mt~~eI~~ii~~---------f-~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv 216 (362)
T PRK10605 147 RALELEEIPGIVND---------F-RQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVV 216 (362)
T ss_pred ccCCHHHHHHHHHH---------H-HHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHH
Confidence 46888888877542 1 3468889999999995421111 111111 1111124442 35666
Q ss_pred HHHHcccCCCcEEeeC------CCCCCcCCHHH-HHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHH-cCCce
Q 026125 145 RAVARGAKRPLLVGDL------PFGTYESSTNQ-AVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVE-AGIAV 211 (243)
Q Consensus 145 ~aV~Rga~~~fvVaDm------PfgsY~~s~e~-Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~-~GIPV 211 (243)
++|++.++.-+|..=| ++..-+.+.++ +++-+..|. +.|.|.|.+..+.. ......+.+.+ -++||
T Consensus 217 ~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~-~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv 295 (362)
T PRK10605 217 DAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLG-KRGIAYLHMSEPDWAGGEPYSDAFREKVRARFHGVI 295 (362)
T ss_pred HHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHH-HcCCCEEEeccccccCCccccHHHHHHHHHHCCCCE
Confidence 7788777654444322 11111236677 787776665 68999999987521 11222233322 36788
Q ss_pred eeccCCccccccc
Q 026125 212 MGHVGLTPQAISV 224 (243)
Q Consensus 212 ~GHiGLtPQ~~~~ 224 (243)
++-=+++|+....
T Consensus 296 ~~~G~~~~~~ae~ 308 (362)
T PRK10605 296 IGAGAYTAEKAET 308 (362)
T ss_pred EEeCCCCHHHHHH
Confidence 8776677765443
|
|
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=88.91 E-value=3.4 Score=37.17 Aligned_cols=88 Identities=15% Similarity=0.166 Sum_probs=61.2
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCC--CCCCcCCHHHHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP--FGTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmP--fgsY~~s~e~Av~nA~Rl~ke 182 (243)
++.+.++|+|.|.+.|++|. .+-+++-...+.+++..+.+ |.| |- .+.+..-|+.|+...+ +
T Consensus 149 ~~~~~~~G~~~i~l~DT~G~----------~~P~~v~~lv~~l~~~~~~~----~i~l~~H-~Hn~~GlA~An~laAi-~ 212 (268)
T cd07940 149 VEAAIEAGATTINIPDTVGY----------LTPEEFGELIKKLKENVPNI----KVPISVH-CHNDLGLAVANSLAAV-E 212 (268)
T ss_pred HHHHHHcCCCEEEECCCCCC----------CCHHHHHHHHHHHHHhCCCC----ceeEEEE-ecCCcchHHHHHHHHH-H
Confidence 45567789999999999876 56778888888888877642 233 42 3468889999999999 5
Q ss_pred hCCCEEEeC--C-----CCCchHHHHHHHHHcC
Q 026125 183 GGMDAIKLE--G-----GSPSRITAARGIVEAG 208 (243)
Q Consensus 183 aGAdaVKLE--G-----g~~~~~~~i~~L~~~G 208 (243)
+||+.|-.. | |..-.+.++..|...|
T Consensus 213 aG~~~iD~s~~GlG~~aGN~~tE~lv~~L~~~~ 245 (268)
T cd07940 213 AGARQVECTINGIGERAGNAALEEVVMALKTRY 245 (268)
T ss_pred hCCCEEEEEeeccccccccccHHHHHHHHHhcc
Confidence 899987542 1 1112455566666654
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3 | Back alignment and domain information |
|---|
Probab=88.78 E-value=3.1 Score=38.99 Aligned_cols=140 Identities=16% Similarity=0.209 Sum_probs=89.7
Q ss_pred CCHHHHHHhhhCC-CcEEEEecCCH-----HHHHHHHHcCCCEEE-eCcchhhhhccCCCC-ccCCHHHHH-HHHHHHHc
Q 026125 79 VTLTHLRQKHKNG-EPITMVTAYDY-----PSAVHLDSAGIDICL-VGDSAAMVVHGHDTT-LPITLEEML-VHCRAVAR 149 (243)
Q Consensus 79 ~tv~~Lr~~kk~g-~~ItmlTAYD~-----~sA~iae~AGiDiIL-VGDSlgmv~lG~~dT-~~vTldeMi-~h~~aV~R 149 (243)
..+.+|+..|+.| +-|+=+|+.++ .-.+++++.|+.+|. +|.=.... +|+- ...+.||+. ...+.+..
T Consensus 39 ~~~~El~~~k~~Gg~tiVd~T~~g~GRd~~~l~~is~~tGv~II~~TG~y~~~~---~p~~~~~~s~e~la~~~i~Ei~~ 115 (308)
T PF02126_consen 39 AAVAELKEFKAAGGRTIVDATPIGLGRDVEALREISRRTGVNIIASTGFYKEPF---YPEWVREASVEELADLFIREIEE 115 (308)
T ss_dssp HHHHHHHHHHHTTEEEEEE--SGGGTB-HHHHHHHHHHHT-EEEEEEEE-SGGC---SCHHHHTSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCEEEecCCcccCcCHHHHHHHHHHhCCeEEEeCCCCcccc---CChhhhcCCHHHHHHHHHHHHHh
Confidence 3455666665554 77888898775 468899999999995 88644322 2322 456677765 45677888
Q ss_pred ccCCC-----cEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCC-EEEeCCCCCchHHHHHHHHHcCCc----eeeccCCcc
Q 026125 150 GAKRP-----LLVGDLPFGTYESSTNQAVDTAVRILKEGGMD-AIKLEGGSPSRITAARGIVEAGIA----VMGHVGLTP 219 (243)
Q Consensus 150 ga~~~-----fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAd-aVKLEGg~~~~~~~i~~L~~~GIP----V~GHiGLtP 219 (243)
|.+.+ +|=.-..+.......+..++.|.|.-++.||- .++.+.|......+++-|.++|++ |+||+...|
T Consensus 116 GidgT~ikaG~Ik~~~~~~~it~~E~k~lrAaa~A~~~TG~pI~~H~~~g~~~~~e~~~il~e~Gv~~~rvvigH~D~~~ 195 (308)
T PF02126_consen 116 GIDGTGIKAGIIKEIGSSNPITPLEEKVLRAAARAHKETGAPISTHTGRGTRMGLEQLDILEEEGVDPSRVVIGHMDRNP 195 (308)
T ss_dssp -STTSSB-ESEEEEEEBTTBCEHHHHHHHHHHHHHHHHHT-EEEEEESTTGTCHHHHHHHHHHTT--GGGEEETSGGGST
T ss_pred cCCCCccchhheeEeeccCCCCHHHHHHHHHHHHHHHHhCCeEEEcCCCCCcCHHHHHHHHHHcCCChhHeEEeCCCCCC
Confidence 77643 22221122334335567999999999999965 467888864567778999999998 899999888
Q ss_pred cc
Q 026125 220 QA 221 (243)
Q Consensus 220 Q~ 221 (243)
..
T Consensus 196 D~ 197 (308)
T PF02126_consen 196 DL 197 (308)
T ss_dssp -H
T ss_pred CH
Confidence 73
|
1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A .... |
| >COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=88.75 E-value=3.4 Score=39.95 Aligned_cols=60 Identities=22% Similarity=0.419 Sum_probs=43.7
Q ss_pred HHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC----CchHHHHHHHHHcCCce
Q 026125 141 LVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS----PSRITAARGIVEAGIAV 211 (243)
Q Consensus 141 i~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~----~~~~~~i~~L~~~GIPV 211 (243)
..-.+.|++-.+.| +|+|.=|- | .- |.+.+ +.|+|.+.|--|. +....++++..+.|||+
T Consensus 63 A~A~~~Ik~~~~vP-LVaDiHf~-~----rl----a~~~~-~~g~~k~RINPGNig~~~~v~~vVe~Ak~~g~pi 126 (361)
T COG0821 63 AEALKEIKQRLNVP-LVADIHFD-Y----RL----ALEAA-ECGVDKVRINPGNIGFKDRVREVVEAAKDKGIPI 126 (361)
T ss_pred HHHHHHHHHhCCCC-EEEEeecc-H----HH----HHHhh-hcCcceEEECCcccCcHHHHHHHHHHHHHcCCCE
Confidence 34446677777777 79999883 5 22 34555 5889999998772 34567788889999998
|
|
| >TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase | Back alignment and domain information |
|---|
Probab=88.73 E-value=18 Score=32.78 Aligned_cols=114 Identities=19% Similarity=0.150 Sum_probs=77.3
Q ss_pred HHHhhhCCCcEEE--EecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCC
Q 026125 84 LRQKHKNGEPITM--VTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (243)
Q Consensus 84 Lr~~kk~g~~Itm--lTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmP 161 (243)
|+++.++|++..- ++-.+...+.++..+|+|.+++=- -.++.+++++..+++++..+--.+ ++=.|
T Consensus 3 lk~~l~~g~~~~G~~~~~~sp~~~e~~a~~G~D~v~iD~----------EHg~~~~~~~~~~~~a~~~~g~~~--~VRvp 70 (249)
T TIGR03239 3 FRQDLLARETLIGCWSALGNPITTEVLGLAGFDWLLLDG----------EHAPNDVLTFIPQLMALKGSASAP--VVRPP 70 (249)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHhcCCCEEEEec----------ccCCCCHHHHHHHHHHHhhcCCCc--EEECC
Confidence 6777788887543 566888999999999999998741 234778899888888876433233 44556
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHH-HcCCceeeccCCccc
Q 026125 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIV-EAGIAVMGHVGLTPQ 220 (243)
Q Consensus 162 fgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~-~~GIPV~GHiGLtPQ 220 (243)
.. ++... .|.+ +.||++|.+--=. ..++ +++++ ..--|=.|.=|+-|-
T Consensus 71 ~~----~~~~i----~r~L-D~Ga~gIivP~v~-taee-a~~~v~a~kypP~G~Rg~~~~ 119 (249)
T TIGR03239 71 WN----EPVII----KRLL-DIGFYNFLIPFVE-SAEE-AERAVAATRYPPEGIRGVSVS 119 (249)
T ss_pred CC----CHHHH----HHHh-cCCCCEEEecCcC-CHHH-HHHHHHHcCCCCCCcCCCCcc
Confidence 63 33444 6777 6999999876543 3444 34444 455677777777663
|
In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which |
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.71 E-value=3.6 Score=38.10 Aligned_cols=92 Identities=25% Similarity=0.253 Sum_probs=62.1
Q ss_pred CHHHHHHhhhCCCcEEEE-ecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEe
Q 026125 80 TLTHLRQKHKNGEPITMV-TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (243)
Q Consensus 80 tv~~Lr~~kk~g~~Itml-TAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVa 158 (243)
|+.--..+.++| ..+++ |--|..-|+-.+++||-.+.=..+--.+-+|..+. +..+-++..++-| ||+
T Consensus 119 tl~Aae~Lv~eG-F~VlPY~~dD~v~arrLee~GcaavMPl~aPIGSg~G~~n~---------~~l~iiie~a~VP-viV 187 (262)
T COG2022 119 TLKAAEQLVKEG-FVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIGSGLGLQNP---------YNLEIIIEEADVP-VIV 187 (262)
T ss_pred HHHHHHHHHhCC-CEEeeccCCCHHHHHHHHhcCceEeccccccccCCcCcCCH---------HHHHHHHHhCCCC-EEE
Confidence 455555566665 55666 55678899999999999997322333344566653 4556677777777 788
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
|-..|+ +.+| ...| |-|+|+|-+-
T Consensus 188 DAGiG~----pSdA----a~aM-ElG~DaVL~N 211 (262)
T COG2022 188 DAGIGT----PSDA----AQAM-ELGADAVLLN 211 (262)
T ss_pred eCCCCC----hhHH----HHHH-hcccceeehh
Confidence 987754 4555 3567 6999999875
|
|
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=88.65 E-value=7.3 Score=37.34 Aligned_cols=91 Identities=22% Similarity=0.276 Sum_probs=50.8
Q ss_pred Cc-EEEEecC-C----HHHHHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC
Q 026125 92 EP-ITMVTAY-D----YPSAVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG 163 (243)
Q Consensus 92 ~~-ItmlTAY-D----~~sA~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg 163 (243)
.| |+-+... | .-.|+.++++|+|+|= +|-......-|.-....-.-+.+..-+++|++.++.| |.+=|+-
T Consensus 100 ~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~P-v~vKl~p- 177 (420)
T PRK08318 100 RALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLP-VIVKLTP- 177 (420)
T ss_pred ceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCc-EEEEcCC-
Confidence 44 4444555 4 2346777889999994 3322111111222222234566777788888887777 4555543
Q ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEE
Q 026125 164 TYESSTNQAVDTAVRILKEGGMDAIK 189 (243)
Q Consensus 164 sY~~s~e~Av~nA~Rl~keaGAdaVK 189 (243)
.+ .+..+. .+.++++|||+|-
T Consensus 178 ~~-~~~~~~----a~~~~~~Gadgi~ 198 (420)
T PRK08318 178 NI-TDIREP----ARAAKRGGADAVS 198 (420)
T ss_pred Cc-ccHHHH----HHHHHHCCCCEEE
Confidence 22 232222 3455579999998
|
|
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=88.55 E-value=10 Score=34.50 Aligned_cols=104 Identities=14% Similarity=0.163 Sum_probs=67.2
Q ss_pred HHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 026125 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (243)
Q Consensus 108 ae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAd 186 (243)
.-+.|+|-|+++.|.|- .-.+|.||-..-.+.+++.++ +..|++...- .|.+++++.+...- +.|||
T Consensus 31 l~~~Gv~Gi~~~GstGE-------~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~----~~t~~~i~~a~~a~-~~Gad 98 (280)
T PLN02417 31 QIENGAEGLIVGGTTGE-------GQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGS----NSTREAIHATEQGF-AVGMH 98 (280)
T ss_pred HHHcCCCEEEECccCcc-------hhhCCHHHHHHHHHHHHHHhCCCCcEEEECCC----ccHHHHHHHHHHHH-HcCCC
Confidence 34579999988767653 235788887666665555443 3446666532 37899999886654 79999
Q ss_pred EEEeCCC------CCchHHHHHHHHHcCCcee-------eccCCccccccc
Q 026125 187 AIKLEGG------SPSRITAARGIVEAGIAVM-------GHVGLTPQAISV 224 (243)
Q Consensus 187 aVKLEGg------~~~~~~~i~~L~~~GIPV~-------GHiGLtPQ~~~~ 224 (243)
+|-+--- .+......+.+.++. ||+ .++-|.|+....
T Consensus 99 av~~~~P~y~~~~~~~i~~~f~~va~~~-pi~lYn~P~~tg~~l~~~~l~~ 148 (280)
T PLN02417 99 AALHINPYYGKTSQEGLIKHFETVLDMG-PTIIYNVPGRTGQDIPPEVIFK 148 (280)
T ss_pred EEEEcCCccCCCCHHHHHHHHHHHHhhC-CEEEEEChhHhCcCCCHHHHHH
Confidence 9988643 122333456678888 986 345566665443
|
|
| >cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=88.54 E-value=7.3 Score=35.65 Aligned_cols=84 Identities=21% Similarity=0.181 Sum_probs=56.0
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
+..+|+.. ..++...+.+.+...|..+.++|+|+|++| +++.+++-.-.+.++.. ++..+.+.
T Consensus 171 v~~~r~~~-~~~~~I~vev~t~eea~~A~~~gaD~I~ld--------------~~~~e~l~~~v~~i~~~-~~i~i~as- 233 (269)
T cd01568 171 VKRARAAA-PFEKKIEVEVETLEEAEEALEAGADIIMLD--------------NMSPEELKEAVKLLKGL-PRVLLEAS- 233 (269)
T ss_pred HHHHHHhC-CCCCeEEEecCCHHHHHHHHHcCCCEEEEC--------------CCCHHHHHHHHHHhccC-CCeEEEEE-
Confidence 45555542 225779999999999999999999999997 34556665544444332 33334454
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
|+ .|++++ ..+. ++|||+|-+
T Consensus 234 --GG--It~~ni----~~~a-~~Gad~Isv 254 (269)
T cd01568 234 --GG--ITLENI----RAYA-ETGVDVIST 254 (269)
T ss_pred --CC--CCHHHH----HHHH-HcCCCEEEE
Confidence 22 355554 5666 589999976
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=88.50 E-value=20 Score=32.91 Aligned_cols=80 Identities=24% Similarity=0.265 Sum_probs=43.4
Q ss_pred HHHHHHHHcCCCEEEeCcchhhh--hccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMV--VHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv--~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
..|+.++++|+|+|=+-=|--+. .-|+-....-..|.+..-+++|++.++.|+. +=++- .+ ++..+- .+.+
T Consensus 117 ~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~-vKl~~-~~----~~~~~~-a~~~ 189 (299)
T cd02940 117 ELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVI-AKLTP-NI----TDIREI-ARAA 189 (299)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeE-EECCC-Cc----hhHHHH-HHHH
Confidence 34667788899988432121111 1111111223345667777888888877754 44432 12 233333 3444
Q ss_pred HHhCCCEEE
Q 026125 181 KEGGMDAIK 189 (243)
Q Consensus 181 keaGAdaVK 189 (243)
+++|||+|-
T Consensus 190 ~~~Gadgi~ 198 (299)
T cd02940 190 KEGGADGVS 198 (299)
T ss_pred HHcCCCEEE
Confidence 579999996
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=88.39 E-value=16 Score=33.80 Aligned_cols=125 Identities=15% Similarity=0.198 Sum_probs=81.6
Q ss_pred CCHHH-HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC
Q 026125 79 VTLTH-LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK 152 (243)
Q Consensus 79 ~tv~~-Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~ 152 (243)
+|..+ |+..++++--+-..++||+.+++ .||+.+.++|+ +..+. .-| ..++.+...++..++.++
T Consensus 4 v~~~~~l~~A~~~~yaV~Afn~~n~e~~~avi~aAe~~~~Pvii~~~~~~----~~~-----~~~~~~~~~~~~~a~~~~ 74 (281)
T PRK06806 4 VQMKELLKKANQENYGVGAFSVANMEMVMGAIKAAEELNSPIILQIAEVR----LNH-----SPLHLIGPLMVAAAKQAK 74 (281)
T ss_pred CcHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcch----hcc-----CChHHHHHHHHHHHHHCC
Confidence 45555 44556788889999999999986 57888999887 43222 111 345555555566667776
Q ss_pred CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCcccc
Q 026125 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTPQA 221 (243)
Q Consensus 153 ~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLtPQ~ 221 (243)
-| |..-|..+ . +.+.+ .+.+ ++|++.|.+-+.... ...+++..-+.|+||-+-+|=++|.
T Consensus 75 vp-v~lHlDH~-~--~~e~i----~~Al-~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~ 141 (281)
T PRK06806 75 VP-VAVHFDHG-M--TFEKI----KEAL-EIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGS 141 (281)
T ss_pred CC-EEEECCCC-C--CHHHH----HHHH-HcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCc
Confidence 67 67888884 2 44433 4556 589999999887432 2244455567899998555544443
|
|
| >cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR) | Back alignment and domain information |
|---|
Probab=88.32 E-value=14 Score=33.15 Aligned_cols=127 Identities=21% Similarity=0.170 Sum_probs=78.7
Q ss_pred CCCcEEEEecCCHHHHHHHH------HcCCC--EEEeCcchhhhhccCCCC---ccCCHHHHHHHHHHHHcccCCCcEEe
Q 026125 90 NGEPITMVTAYDYPSAVHLD------SAGID--ICLVGDSAAMVVHGHDTT---LPITLEEMLVHCRAVARGAKRPLLVG 158 (243)
Q Consensus 90 ~g~~ItmlTAYD~~sA~iae------~AGiD--iILVGDSlgmv~lG~~dT---~~vTldeMi~h~~aV~Rga~~~fvVa 158 (243)
+-++|.-+||.|.....+.+ ++|++ +++.||..... .++++ ....--|++...+... +.....-++
T Consensus 58 g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~--~~~~~~~~~~~~a~~Li~~i~~~~-~~~~~igva 134 (274)
T cd00537 58 GIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDPPKGG--DQPGAKPVGFVYAVDLVELIRKEN-GGGFSIGVA 134 (274)
T ss_pred CCCeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCC--CCCCCCCCCCCCHHHHHHHHHHhc-CCCCccccc
Confidence 35789999999998776654 78999 33569976432 12222 3344556666555442 233333346
Q ss_pred eCCCCCCcC-CHHHHHHHHHHHHHHhCCCEEEeCCCCC--chHHHHHHHHHcCCceeeccCCccc
Q 026125 159 DLPFGTYES-STNQAVDTAVRILKEGGMDAIKLEGGSP--SRITAARGIVEAGIAVMGHVGLTPQ 220 (243)
Q Consensus 159 DmPfgsY~~-s~e~Av~nA~Rl~keaGAdaVKLEGg~~--~~~~~i~~L~~~GIPV~GHiGLtPQ 220 (243)
--|.+..+. |.+.-++.-.+=+ ++||+-+-..=..+ .....++.+.++||.|-=+.|+.|=
T Consensus 135 ~yPe~hp~~~~~~~~~~~L~~Ki-~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi~vPIi~GI~p~ 198 (274)
T cd00537 135 AYPEGHPEAPSLEEDIKRLKRKV-DAGADFIITQLFFDNDAFLRFVDRCRAAGITVPIIPGIMPL 198 (274)
T ss_pred cCCCcCCCCCCHHHHHHHHHHHH-HCCCCEEeecccccHHHHHHHHHHHHHcCCCCCEEeecccc
Confidence 666655443 3566666655555 58999887665532 2344566677889766667898885
|
5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease. |
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=88.29 E-value=4 Score=37.59 Aligned_cols=128 Identities=19% Similarity=0.245 Sum_probs=75.1
Q ss_pred HHHhhhCCCcEEE--EecCCH------HHHHHHHHcCCCEEEeCcchhh-hhccC----CC----CccCCHHHHHHHHHH
Q 026125 84 LRQKHKNGEPITM--VTAYDY------PSAVHLDSAGIDICLVGDSAAM-VVHGH----DT----TLPITLEEMLVHCRA 146 (243)
Q Consensus 84 Lr~~kk~g~~Itm--lTAYD~------~sA~iae~AGiDiILVGDSlgm-v~lG~----~d----T~~vTldeMi~h~~a 146 (243)
|+++++++++..+ +|+=|. ..+...+++|+|+|=+|-..+- +.-|- .+ -..+++++.+..++.
T Consensus 1 f~~lk~~~~~~li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ 80 (259)
T PF00290_consen 1 FAELKKEGRKALIPYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKE 80 (259)
T ss_dssp HHHHHHTTBTEEEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred ChhHHhCCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4556666666544 466443 2356677899999966533221 11110 00 134689999999999
Q ss_pred HH-cccCCCcEEeeCCCCCCcCCHH--HHHHHHHHHHHHhCCCEEEeCCCC-CchHHHHHHHHHcCCceeeccCC
Q 026125 147 VA-RGAKRPLLVGDLPFGTYESSTN--QAVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVMGHVGL 217 (243)
Q Consensus 147 V~-Rga~~~fvVaDmPfgsY~~s~e--~Av~nA~Rl~keaGAdaVKLEGg~-~~~~~~i~~L~~~GIPV~GHiGL 217 (243)
++ +..+.|+++ ++|- |+- ..++.=.+..+++|+|++-+-|=. ++...+.+.+.+.||..+-=+--
T Consensus 81 ir~~~~~~pivl-----m~Y~-N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p 149 (259)
T PF00290_consen 81 IRKKEPDIPIVL-----MTYY-NPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAP 149 (259)
T ss_dssp HHHHCTSSEEEE-----EE-H-HHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEET
T ss_pred HhccCCCCCEEE-----Eeec-cHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECC
Confidence 99 666666543 3563 432 234444666778999999999864 34456566677889987765544
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.27 E-value=4.4 Score=40.31 Aligned_cols=68 Identities=31% Similarity=0.407 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEe-eCCCCCCcCCHHHHHHHHHH
Q 026125 100 YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG-DLPFGTYESSTNQAVDTAVR 178 (243)
Q Consensus 100 YD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVa-DmPfgsY~~s~e~Av~nA~R 178 (243)
-+...+...-++|+|+|.+ |+. +|+ ...+.||+ +.|++..|+.+|++ |. .+.|++ ..
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~-D~a----~~~----~~~~~~~i---~~ik~~~p~~~v~agnv------~t~~~a----~~ 284 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVV-DTA----HGH----QEKMLEAL---RAVRALDPGVPIVAGNV------VTAEGT----RD 284 (479)
T ss_pred hHHHHHHHHHHhCCCEEEE-ecc----CCc----cHHHHHHH---HHHHHHCCCCeEEeecc------CCHHHH----HH
Confidence 3445566666789999876 332 444 33444444 56777777777776 64 355666 55
Q ss_pred HHHHhCCCEEEe
Q 026125 179 ILKEGGMDAIKL 190 (243)
Q Consensus 179 l~keaGAdaVKL 190 (243)
++ ++|||+||+
T Consensus 285 l~-~aGad~v~v 295 (479)
T PRK07807 285 LV-EAGADIVKV 295 (479)
T ss_pred HH-HcCCCEEEE
Confidence 66 599999994
|
|
| >TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=88.16 E-value=5.8 Score=35.82 Aligned_cols=114 Identities=20% Similarity=0.182 Sum_probs=71.9
Q ss_pred HHHhhhCCCcEE--EEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCC
Q 026125 84 LRQKHKNGEPIT--MVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (243)
Q Consensus 84 Lr~~kk~g~~It--mlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmP 161 (243)
|+++.++|+++. .++-.+...+.++..+|+|.+.+= .+++. .+++++...+++... .+.. +++=.|
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~e~~~~~g~D~v~iD---------lEH~~-~~~~~~~~~~~a~~~-~g~~-~~VRv~ 70 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAAEICAGAGFDWLLID---------GEHAP-NDVRTILSQLQALAP-YPSS-PVVRPA 70 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHHHHHHhcCCCEEEEe---------ccCCC-CCHHHHHHHHHHHHh-cCCC-cEEECC
Confidence 777778898864 356688889999999999988754 23332 488888887777743 2223 455666
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHc-CCceeeccCCccc
Q 026125 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGHVGLTPQ 220 (243)
Q Consensus 162 fgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~GHiGLtPQ 220 (243)
..++ .. ..+.+ ++||++|-+---. ..++ ++.++++ --|=.|+=|+-|.
T Consensus 71 ~~~~----~~----i~~~L-d~Ga~gIivP~v~-s~e~-a~~~v~~~~y~P~G~Rg~~~~ 119 (249)
T TIGR02311 71 IGDP----VL----IKQLL-DIGAQTLLVPMIE-TAEQ-AEAAVAATRYPPMGIRGVGSA 119 (249)
T ss_pred CCCH----HH----HHHHh-CCCCCEEEecCcC-CHHH-HHHHHHHcCCCCCCcCCCCCc
Confidence 6433 32 35677 6999999775432 2233 3444432 2455666565543
|
This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon. |
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=88.14 E-value=13 Score=33.21 Aligned_cols=118 Identities=8% Similarity=0.029 Sum_probs=67.4
Q ss_pred CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhh----hccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCc
Q 026125 91 GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMV----VHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYE 166 (243)
Q Consensus 91 g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv----~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~ 166 (243)
+.++.++.-.+.--...+.++|+|.|-+..+.+-. .+| .+..-.++.+...++..+. ... .+....|+.+.
T Consensus 61 ~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~--~~~~~~~~~~~~~i~~a~~-~G~-~v~~~~~~~~~- 135 (259)
T cd07939 61 PARLIVWCRAVKEDIEAALRCGVTAVHISIPVSDIHLAHKLG--KDRAWVLDQLRRLVGRAKD-RGL-FVSVGAEDASR- 135 (259)
T ss_pred CCEEEEeccCCHHHHHHHHhCCcCEEEEEEecCHHHHHHHhC--CCHHHHHHHHHHHHHHHHH-CCC-eEEEeeccCCC-
Confidence 45566665455556667788999998655444332 222 2222223333333333332 122 34577788555
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc-CCceeec
Q 026125 167 SSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 167 ~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~-GIPV~GH 214 (243)
.+++..++.+.++. +.|++.|.|-|... ....+++.+.+. ++|+--|
T Consensus 136 ~~~~~~~~~~~~~~-~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H 188 (259)
T cd07939 136 ADPDFLIEFAEVAQ-EAGADRLRFADTVGILDPFTTYELIRRLRAATDLPLEFH 188 (259)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 58888888887776 68999999998632 233445555543 3554333
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=87.93 E-value=4.2 Score=36.28 Aligned_cols=92 Identities=17% Similarity=0.169 Sum_probs=59.4
Q ss_pred HHHHHHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE-eeCCCCCCcCCHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-GDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 103 ~sA~iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV-aDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
-.|+.+++.|.-.|- -| ..+.++|+..++.|.+- .--.|..++.-..-.++.+..++
T Consensus 3 ~mA~Aa~~gGA~giR~~~---------------------~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~ 61 (192)
T PF04131_consen 3 RMAKAAEEGGAVGIRANG---------------------VEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALA 61 (192)
T ss_dssp HHHHHHHHCT-SEEEEES---------------------HHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHH
T ss_pred HHHHHHHHCCceEEEcCC---------------------HHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHH
Confidence 468899999999885 44 67789999999888443 12223333333334556667778
Q ss_pred HHhCCCEEEeCCCCCc----hHHHHHHHHHcCCceeeccC
Q 026125 181 KEGGMDAIKLEGGSPS----RITAARGIVEAGIAVMGHVG 216 (243)
Q Consensus 181 keaGAdaVKLEGg~~~----~~~~i~~L~~~GIPV~GHiG 216 (243)
++|||.|-|.+-... ..++++.+-+.+.++|+-+.
T Consensus 62 -~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADis 100 (192)
T PF04131_consen 62 -EAGADIIALDATDRPRPETLEELIREIKEKYQLVMADIS 100 (192)
T ss_dssp -HCT-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE-S
T ss_pred -HcCCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeecC
Confidence 599999999776433 56788999999999998763
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=87.86 E-value=4.9 Score=35.08 Aligned_cols=110 Identities=20% Similarity=0.242 Sum_probs=71.1
Q ss_pred HHHhhhCCCcEEEE--ecCC--------HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCC
Q 026125 84 LRQKHKNGEPITMV--TAYD--------YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR 153 (243)
Q Consensus 84 Lr~~kk~g~~Itml--TAYD--------~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~ 153 (243)
++..++.|-.+..- +++. ...++.+.++|+|.|.+-|+.|. .+-+++....+.+++..+.
T Consensus 121 i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~----------~~P~~v~~li~~l~~~~~~ 190 (265)
T cd03174 121 IEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVGL----------ATPEEVAELVKALREALPD 190 (265)
T ss_pred HHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcCC----------cCHHHHHHHHHHHHHhCCC
Confidence 34445556444332 4566 56788889999999999988643 5667777777778777764
Q ss_pred CcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCC-------CCCchHHHHHHHHHcCC
Q 026125 154 PLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG-------GSPSRITAARGIVEAGI 209 (243)
Q Consensus 154 ~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEG-------g~~~~~~~i~~L~~~GI 209 (243)
. -+.|- .+.+..-++.|+...+ ++||+.|-.-= |.--.+.++..|.+.|+
T Consensus 191 ~----~~~~H-~Hn~~gla~an~laA~-~aG~~~id~s~~G~G~~~Gn~~~e~~~~~l~~~~~ 247 (265)
T cd03174 191 V----PLGLH-THNTLGLAVANSLAAL-EAGADRVDGSVNGLGERAGNAATEDLVAALEGLGI 247 (265)
T ss_pred C----eEEEE-eCCCCChHHHHHHHHH-HcCCCEEEeccccccccccCccHHHHHHHHHhcCC
Confidence 1 22232 3467788999999999 58998875421 11124455666666653
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=87.85 E-value=7 Score=34.08 Aligned_cols=66 Identities=17% Similarity=0.223 Sum_probs=46.5
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG 184 (243)
++++.++|.|.|-++.. . .+ ...+.+++..+.|+++..=+ +- .|++++++|+.+++ +.|
T Consensus 149 ~~~a~~~GaD~Ik~~~~---------~----~~----~~~~~i~~~~~~pvv~~GG~--~~-~~~~~~l~~~~~~~-~~G 207 (235)
T cd00958 149 ARIGAELGADIVKTKYT---------G----DA----ESFKEVVEGCPVPVVIAGGP--KK-DSEEEFLKMVYDAM-EAG 207 (235)
T ss_pred HHHHHHHCCCEEEecCC---------C----CH----HHHHHHHhcCCCCEEEeCCC--CC-CCHHHHHHHHHHHH-HcC
Confidence 77788999999988521 1 23 33456777888886654211 22 38899999999998 599
Q ss_pred CCEEEeC
Q 026125 185 MDAIKLE 191 (243)
Q Consensus 185 AdaVKLE 191 (243)
|++|-+=
T Consensus 208 a~gv~vg 214 (235)
T cd00958 208 AAGVAVG 214 (235)
T ss_pred CcEEEec
Confidence 9999663
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=87.80 E-value=19 Score=33.64 Aligned_cols=118 Identities=13% Similarity=0.131 Sum_probs=83.9
Q ss_pred HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEe
Q 026125 84 LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVa 158 (243)
|+..++++--+-..++||+.+++ .||+.+.++|+ +.-+. ..| ..++.+...++.+++.++-| |..
T Consensus 8 l~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~----~~~-----~~~~~~~~~~~~~a~~~~VP-Val 77 (282)
T TIGR01858 8 LQDAQAGGYAVPAFNIHNLETIQAVVETAAEMRSPVILAGTPGT----FKH-----AGTEYIVALCSAASTTYNMP-LAL 77 (282)
T ss_pred HHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCccH----Hhh-----CCHHHHHHHHHHHHHHCCCC-EEE
Confidence 45567788889999999999986 57888999997 33221 222 24677788888888888777 677
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCcc
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTP 219 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLtP 219 (243)
-|..+. +.|.. .+.+ ++|...|.+.|+..- +..+++..-..||+|=|=||-++
T Consensus 78 HLDHg~---~~e~i----~~ai-~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vg 137 (282)
T TIGR01858 78 HLDHHE---SLDDI----RQKV-HAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLG 137 (282)
T ss_pred ECCCCC---CHHHH----HHHH-HcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecC
Confidence 887732 44444 5666 489999999888432 23445556678999977776665
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=87.79 E-value=7.3 Score=34.70 Aligned_cols=93 Identities=13% Similarity=0.147 Sum_probs=58.5
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
.+..|++.+ .+-.|-.=|.-|...|+.+-++|.|.+.+-. .-+|++..|+. .+
T Consensus 56 ~I~~l~~~~-p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~---------------~~~~vi~~a~~-----------~~ 108 (212)
T PRK05718 56 AIRLIAKEV-PEALIGAGTVLNPEQLAQAIEAGAQFIVSPG---------------LTPPLLKAAQE-----------GP 108 (212)
T ss_pred HHHHHHHHC-CCCEEEEeeccCHHHHHHHHHcCCCEEECCC---------------CCHHHHHHHHH-----------cC
Confidence 355555543 2334455588999999999999999998752 22356665554 44
Q ss_pred CCCC-CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-hHHHHHHHH
Q 026125 160 LPFG-TYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-RITAARGIV 205 (243)
Q Consensus 160 mPfg-sY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-~~~~i~~L~ 205 (243)
+|+. +- .|+.|+ .+.+ +.|++.||+=..... -+..++.|.
T Consensus 109 i~~iPG~-~TptEi----~~a~-~~Ga~~vKlFPa~~~gg~~~lk~l~ 150 (212)
T PRK05718 109 IPLIPGV-STPSEL----MLGM-ELGLRTFKFFPAEASGGVKMLKALA 150 (212)
T ss_pred CCEeCCC-CCHHHH----HHHH-HCCCCEEEEccchhccCHHHHHHHh
Confidence 5554 44 478885 3445 589999999654321 134456665
|
|
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=87.77 E-value=6.3 Score=35.96 Aligned_cols=79 Identities=22% Similarity=0.231 Sum_probs=46.3
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCc--cCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTL--PITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~--~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
.++.++++|+|.|-+....... ...... ...-...+..++.|++..+.|+ ++. |++ .+++++ .++++
T Consensus 233 la~~l~~~G~d~i~vs~g~~~~--~~~~~~~~~~~~~~~~~~~~~ir~~~~iPV-i~~---Ggi-~t~~~a----~~~l~ 301 (327)
T cd02803 233 IAKALEEAGVDALHVSGGSYES--PPPIIPPPYVPEGYFLELAEKIKKAVKIPV-IAV---GGI-RDPEVA----EEILA 301 (327)
T ss_pred HHHHHHHcCCCEEEeCCCCCcc--cccccCCCCCCcchhHHHHHHHHHHCCCCE-EEe---CCC-CCHHHH----HHHHH
Confidence 3778899999999654322110 000000 0111223556677888777774 444 456 367776 56787
Q ss_pred HhCCCEEEeCCC
Q 026125 182 EGGMDAIKLEGG 193 (243)
Q Consensus 182 eaGAdaVKLEGg 193 (243)
++|||.|-+--+
T Consensus 302 ~g~aD~V~igR~ 313 (327)
T cd02803 302 EGKADLVALGRA 313 (327)
T ss_pred CCCCCeeeecHH
Confidence 678999988433
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK12655 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=87.77 E-value=13 Score=33.45 Aligned_cols=101 Identities=19% Similarity=0.300 Sum_probs=66.2
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHc-ccCCCcEE
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR-GAKRPLLV 157 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~R-ga~~~fvV 157 (243)
+.-++.+.++|-++.+-.+|+...|.++.++|+|.|. +| .+- -.|.+ .++.+....+.++. +.+..++.
T Consensus 93 l~Ai~~L~~~GI~vn~T~vfs~~Qa~~Aa~aGa~yIspyvg-R~~--~~g~d-----g~~~i~~~~~~~~~~~~~tkILa 164 (220)
T PRK12655 93 LAAIKKLKKEGIPTLGTAVYSAAQGLLAALAGAKYVAPYVN-RVD--AQGGD-----GIRMVQELQTLLEMHAPESMVLA 164 (220)
T ss_pred HHHHHHHHHCCCceeEeEecCHHHHHHHHHcCCeEEEeecc-hHh--HcCCC-----HHHHHHHHHHHHHhcCCCcEEEE
Confidence 6677788889999999999999999999999999884 66 221 22332 23333333333332 34444333
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHH
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE 206 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~ 206 (243)
+ |+ .|+++.++ .+ .+|||.+-+- +++++.|.+
T Consensus 165 A-----S~-r~~~~v~~----~~-~~G~d~vTip------~~vl~~l~~ 196 (220)
T PRK12655 165 A-----SF-KTPRQALD----CL-LAGCQSITLP------LDVAQQMLN 196 (220)
T ss_pred E-----ec-CCHHHHHH----HH-HcCCCEEECC------HHHHHHHHc
Confidence 4 67 58888854 44 3899999885 445566644
|
|
| >PRK09250 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=87.74 E-value=1.5 Score=42.19 Aligned_cols=83 Identities=13% Similarity=0.129 Sum_probs=59.7
Q ss_pred HHHHHHHHcCCCEE---EeCc--chhhhhccCCCC---ccCCHHHHHHHHHHHHccc---CCCcEEeeCCCCCCcCCHHH
Q 026125 103 PSAVHLDSAGIDIC---LVGD--SAAMVVHGHDTT---LPITLEEMLVHCRAVARGA---KRPLLVGDLPFGTYESSTNQ 171 (243)
Q Consensus 103 ~sA~iae~AGiDiI---LVGD--Slgmv~lG~~dT---~~vTldeMi~h~~aV~Rga---~~~fvVaDmPfgsY~~s~e~ 171 (243)
.-|+++.+.|.|+| +.|| ++..+-+|..+. ...+.+.....++-|.+++ +.|+|++.=|= .+.++
T Consensus 221 ~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k----~~~~e 296 (348)
T PRK09250 221 QANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGAS----KGEDD 296 (348)
T ss_pred HHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCC----CCHHH
Confidence 35899999999999 4665 444454555443 3455566677778888887 88988877554 36678
Q ss_pred HHHHHHHH---HHHhCCCEEEe
Q 026125 172 AVDTAVRI---LKEGGMDAIKL 190 (243)
Q Consensus 172 Av~nA~Rl---~keaGAdaVKL 190 (243)
.++.+... + ++||.+|-+
T Consensus 297 ~L~~v~~a~~~i-~aGa~Gv~i 317 (348)
T PRK09250 297 LLDAVRTAVINK-RAGGMGLII 317 (348)
T ss_pred HHHHHHHHHHhh-hcCCcchhh
Confidence 88888777 7 489999866
|
|
| >cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport | Back alignment and domain information |
|---|
Probab=87.72 E-value=7.9 Score=35.60 Aligned_cols=83 Identities=23% Similarity=0.229 Sum_probs=52.1
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
.+..+|+.. ++++.-+.+++...|..+.++|+|.|.+| ++..+++-...+.+++..++..+++
T Consensus 173 av~~~R~~~--~~~~IgVev~t~eea~~A~~~gaD~I~ld--------------~~~p~~l~~~~~~~~~~~~~i~i~A- 235 (272)
T cd01573 173 ALARLRATA--PEKKIVVEVDSLEEALAAAEAGADILQLD--------------KFSPEELAELVPKLRSLAPPVLLAA- 235 (272)
T ss_pred HHHHHHHhC--CCCeEEEEcCCHHHHHHHHHcCCCEEEEC--------------CCCHHHHHHHHHHHhccCCCceEEE-
Confidence 345555543 34567999999999999999999999998 2333455444555544322222222
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEE
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAI 188 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaV 188 (243)
-|+ .++++. ..+. +.|||+|
T Consensus 236 --sGG--I~~~ni----~~~~-~~Gvd~I 255 (272)
T cd01573 236 --AGG--INIENA----AAYA-AAGADIL 255 (272)
T ss_pred --ECC--CCHHHH----HHHH-HcCCcEE
Confidence 122 355444 6666 5899999
|
In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. |
| >cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II | Back alignment and domain information |
|---|
Probab=87.71 E-value=19 Score=34.69 Aligned_cols=131 Identities=11% Similarity=0.075 Sum_probs=88.6
Q ss_pred HHHHhhhCCCcEEEEecCCHHHH----HHHHHcCCCEEE-eCcchhhhhccC------CCCc-cCCHHHHHHHHHHHHcc
Q 026125 83 HLRQKHKNGEPITMVTAYDYPSA----VHLDSAGIDICL-VGDSAAMVVHGH------DTTL-PITLEEMLVHCRAVARG 150 (243)
Q Consensus 83 ~Lr~~kk~g~~ItmlTAYD~~sA----~iae~AGiDiIL-VGDSlgmv~lG~------~dT~-~vTldeMi~h~~aV~Rg 150 (243)
-|+..++++--+-..++|+..++ ..||+.+.++|+ +..+-..-..|- ++.. -..++.+...++..++.
T Consensus 4 ll~~A~~~~yAV~AfN~~n~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 83 (340)
T cd00453 4 VFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEH 83 (340)
T ss_pred HHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHHH
Confidence 36667788889999999999998 457888999987 332122222331 1111 11266778888888888
Q ss_pred cCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC-----------CCEEEeCCCCCc-------hHHHHHHHHHcCCcee
Q 026125 151 AKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG-----------MDAIKLEGGSPS-------RITAARGIVEAGIAVM 212 (243)
Q Consensus 151 a~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG-----------AdaVKLEGg~~~-------~~~~i~~L~~~GIPV~ 212 (243)
++-| |+.-|..+. ..+.+.. .+.+ ++| .+.|.+.|+... +..+++..-..||.|=
T Consensus 84 ~~VP-V~lHLDH~~-~~~~e~i----~~ai-~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~T~~vve~Ah~~gi~VE 156 (340)
T cd00453 84 YGVP-VILHTDHCA-KKLLPWI----DGLL-DAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLE 156 (340)
T ss_pred CCCC-EEEEcCCCC-CCCHHHH----HHHH-HcCCccccccCCCCceeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 8777 778888854 2244443 5667 589 999999888532 2344555667899998
Q ss_pred eccCCccc
Q 026125 213 GHVGLTPQ 220 (243)
Q Consensus 213 GHiGLtPQ 220 (243)
|=||-+.-
T Consensus 157 aElG~igG 164 (340)
T cd00453 157 IELGCTGG 164 (340)
T ss_pred EEEEecCC
Confidence 77777653
|
This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=87.62 E-value=8 Score=30.96 Aligned_cols=102 Identities=22% Similarity=0.234 Sum_probs=56.6
Q ss_pred HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 102 ~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
...++.+.+.|+|++-++...... .+. ..... ...+.+++..+.+ +++++-... ..+.+.-+.+.++
T Consensus 15 ~~~~~~~~~~G~~~v~~~~~~~~~-~~~---~~~~~----~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~a~~~~ 81 (200)
T cd04722 15 VELAKAAAEAGADAIIVGTRSSDP-EEA---ETDDK----EVLKEVAAETDLP-LGVQLAIND----AAAAVDIAAAAAR 81 (200)
T ss_pred HHHHHHHHcCCCCEEEEeeEEECc-ccC---CCccc----cHHHHHHhhcCCc-EEEEEccCC----chhhhhHHHHHHH
Confidence 345666778899999887533221 000 00100 1233455555566 455543322 2233222235566
Q ss_pred HhCCCEEEeCCCCCc----hHHHHHHHHHc--CCceeeccC
Q 026125 182 EGGMDAIKLEGGSPS----RITAARGIVEA--GIAVMGHVG 216 (243)
Q Consensus 182 eaGAdaVKLEGg~~~----~~~~i~~L~~~--GIPV~GHiG 216 (243)
++|+|+|.+-++... ...+++.+.+. ++||.-=+.
T Consensus 82 ~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~ 122 (200)
T cd04722 82 AAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLS 122 (200)
T ss_pred HcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 899999999877632 45567778877 888776543
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=87.56 E-value=8.2 Score=36.47 Aligned_cols=108 Identities=12% Similarity=0.024 Sum_probs=66.3
Q ss_pred CCcEEEEec---CCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcC
Q 026125 91 GEPITMVTA---YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYES 167 (243)
Q Consensus 91 g~~ItmlTA---YD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~ 167 (243)
+.+++++.. ++....+.+.++|+|.|-+.+...- .+....|++.+++- .. .+.+.+-. ++..
T Consensus 76 ~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e------------~d~~~~~i~~ak~~-G~-~v~~~l~~-s~~~ 140 (333)
T TIGR03217 76 RAKVAVLLLPGIGTVHDLKAAYDAGARTVRVATHCTE------------ADVSEQHIGMAREL-GM-DTVGFLMM-SHMT 140 (333)
T ss_pred CCEEEEEeccCccCHHHHHHHHHCCCCEEEEEeccch------------HHHHHHHHHHHHHc-CC-eEEEEEEc-ccCC
Confidence 356664432 4677788889999999987754311 23456666666542 11 23333333 4445
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc---CCceeec
Q 026125 168 STNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA---GIAVMGH 214 (243)
Q Consensus 168 s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~---GIPV~GH 214 (243)
+++..++.+.++ .+.||+.|.|-|... .....+++|.++ .||+-=|
T Consensus 141 ~~e~l~~~a~~~-~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H 194 (333)
T TIGR03217 141 PPEKLAEQAKLM-ESYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFH 194 (333)
T ss_pred CHHHHHHHHHHH-HhcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEE
Confidence 788777777654 579999999999832 234456666554 3666544
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=87.47 E-value=6.2 Score=40.96 Aligned_cols=128 Identities=21% Similarity=0.194 Sum_probs=72.1
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEe--C---------cchhhhh-ccCCCCccCCHHHHHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV--G---------DSAAMVV-HGHDTTLPITLEEMLVHC 144 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILV--G---------DSlgmv~-lG~~dT~~vTldeMi~h~ 144 (243)
+.+|..++.+..+. | .-.|+.+.+||+|.|=+ | ..+.+.- -.|-....--+.-.++..
T Consensus 539 ~~mt~~eI~~~i~~---------f-~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv 608 (765)
T PRK08255 539 REMTRADMDRVRDD---------F-VAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVF 608 (765)
T ss_pred CcCCHHHHHHHHHH---------H-HHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHH
Confidence 56888888887542 1 24677889999999943 3 1121110 011111111233456677
Q ss_pred HHHHcccCCCcEE------eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-----------hHHHHHHHHH-
Q 026125 145 RAVARGAKRPLLV------GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-----------RITAARGIVE- 206 (243)
Q Consensus 145 ~aV~Rga~~~fvV------aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-----------~~~~i~~L~~- 206 (243)
++|+...+.-|.| .|.--++ .+.+++++-|..+. +.|+|.|.+.+|... .....+.+.+
T Consensus 609 ~~ir~~~~~~~~v~~ri~~~~~~~~g--~~~~~~~~~~~~l~-~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~ 685 (765)
T PRK08255 609 RAVRAVWPAEKPMSVRISAHDWVEGG--NTPDDAVEIARAFK-AAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNE 685 (765)
T ss_pred HHHHHhcCCCCeeEEEEccccccCCC--CCHHHHHHHHHHHH-hcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHH
Confidence 7888876543322 1322223 36889988887665 689999999865311 1122233333
Q ss_pred cCCceeeccCC
Q 026125 207 AGIAVMGHVGL 217 (243)
Q Consensus 207 ~GIPV~GHiGL 217 (243)
-+|||++-=++
T Consensus 686 ~~~pv~~~G~i 696 (765)
T PRK08255 686 AGIATIAVGAI 696 (765)
T ss_pred cCCEEEEeCCC
Confidence 27999886444
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=87.45 E-value=8.7 Score=35.08 Aligned_cols=105 Identities=17% Similarity=0.224 Sum_probs=67.5
Q ss_pred HHHHHHcCCCEEEeCcchhh---------hhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCH--HHHH
Q 026125 105 AVHLDSAGIDICLVGDSAAM---------VVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESST--NQAV 173 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgm---------v~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~--e~Av 173 (243)
++..+++|+|+|=+|-..+- -..-..-...+|+++.+..++.+++-.+.|++ +++| .|+ ...+
T Consensus 22 ~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~i-----lm~Y-~N~i~~~G~ 95 (250)
T PLN02591 22 LRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIV-----LFTY-YNPILKRGI 95 (250)
T ss_pred HHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEE-----EEec-ccHHHHhHH
Confidence 45567789999855532211 00000112346888889999999876666643 4466 344 2356
Q ss_pred HHHHHHHHHhCCCEEEeCCCC-CchHHHHHHHHHcCCceeecc
Q 026125 174 DTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVMGHV 215 (243)
Q Consensus 174 ~nA~Rl~keaGAdaVKLEGg~-~~~~~~i~~L~~~GIPV~GHi 215 (243)
++-.+.++++|+|+|-+-|=. ++...+++++-+.||..+==+
T Consensus 96 ~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv 138 (250)
T PLN02591 96 DKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLT 138 (250)
T ss_pred HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 666777789999999998864 335566778888898776544
|
|
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=87.43 E-value=18 Score=33.99 Aligned_cols=83 Identities=18% Similarity=0.062 Sum_probs=50.5
Q ss_pred HHHHHHHHcC--CCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-----CCcEEeeCCCCCCcCCHHHHHHH
Q 026125 103 PSAVHLDSAG--IDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-----RPLLVGDLPFGTYESSTNQAVDT 175 (243)
Q Consensus 103 ~sA~iae~AG--iDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-----~~fvVaDmPfgsY~~s~e~Av~n 175 (243)
-.+..+++++ +|+|-+--|--++- |..+ .-.-+.+.+.+++|++.++ .| |.+=|+. . .+.++..+.
T Consensus 158 d~~~~~~~~~~~ad~lelN~scP~~~-g~~~--~~~~~~~~eiv~aVr~~~~~~~~~~P-V~vKlsp-~--~~~~~~~~i 230 (344)
T PRK05286 158 DYLICLEKLYPYADYFTVNISSPNTP-GLRD--LQYGEALDELLAALKEAQAELHGYVP-LLVKIAP-D--LSDEELDDI 230 (344)
T ss_pred HHHHHHHHHHhhCCEEEEEccCCCCC-Cccc--ccCHHHHHHHHHHHHHHHhccccCCc-eEEEeCC-C--CCHHHHHHH
Confidence 4566777777 99987654443332 2211 2233445566778888776 56 5555553 2 345566555
Q ss_pred HHHHHHHhCCCEEEeCCC
Q 026125 176 AVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 176 A~Rl~keaGAdaVKLEGg 193 (243)
|.. ++++|||+|.+-++
T Consensus 231 a~~-l~~~Gadgi~~~nt 247 (344)
T PRK05286 231 ADL-ALEHGIDGVIATNT 247 (344)
T ss_pred HHH-HHHhCCcEEEEeCC
Confidence 554 45799999999875
|
|
| >TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase | Back alignment and domain information |
|---|
Probab=87.42 E-value=8.3 Score=35.37 Aligned_cols=83 Identities=18% Similarity=0.132 Sum_probs=56.1
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
.+..+|+.. ..+++.-+.+.+...|..+.++|+|.|+.| +++.+++-..++.+... .| +++
T Consensus 167 av~~~r~~~-~~~~~Igvev~t~eea~~A~~~gaDyI~ld--------------~~~~e~lk~~v~~~~~~--ip-i~A- 227 (265)
T TIGR00078 167 AVKRARAAA-PFALKIEVEVESLEEAEEAAEAGADIIMLD--------------NMKPEEIKEAVQLLKGR--VL-LEA- 227 (265)
T ss_pred HHHHHHHhC-CCCCeEEEEeCCHHHHHHHHHcCCCEEEEC--------------CCCHHHHHHHHHHhcCC--Cc-EEE-
Confidence 355566643 335778999999999999999999999886 45667766655544221 33 333
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
-|+ .+++++ ..+. ++|||+|-+
T Consensus 228 --sGG--I~~~ni----~~~a-~~Gvd~Isv 249 (265)
T TIGR00078 228 --SGG--ITLDNL----EEYA-ETGVDVISS 249 (265)
T ss_pred --ECC--CCHHHH----HHHH-HcCCCEEEe
Confidence 123 355555 5566 699999988
|
Synonym: quinolinate phosphoribosyltransferase (decarboxylating) |
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=87.42 E-value=11 Score=33.71 Aligned_cols=116 Identities=14% Similarity=0.087 Sum_probs=66.5
Q ss_pred HHHHHHhhhCCCcEEEEe---cCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHc-ccCCCcE
Q 026125 81 LTHLRQKHKNGEPITMVT---AYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR-GAKRPLL 156 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlT---AYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~R-ga~~~fv 156 (243)
+..+++.. .+.+++++. ..+.-.-..+.++|+|.+-+.++..-. +.+...++.+++ |....+-
T Consensus 65 i~~~~~~~-~~~~~~~~~~~~~~~~~~i~~a~~~g~~~iri~~~~s~~------------~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 65 LEAAAEAL-KQAKLGVLLLPGIGTVDDLKMAADLGVDVVRVATHCTEA------------DVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred HHHHHHhc-cCCEEEEEecCCccCHHHHHHHHHcCCCEEEEEechhhH------------HHHHHHHHHHHHCCCeEEEE
Confidence 34444332 457887774 334555667778899999777666422 234444444433 3322222
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc-C-Cceeec
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-G-IAVMGH 214 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~-G-IPV~GH 214 (243)
+.| ++..+++..++.+.++. +.|+|.|.|-|... ....+++.+.++ + ||+--|
T Consensus 132 ~~~----~~~~~~~~~~~~~~~~~-~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H 191 (263)
T cd07943 132 LMM----SHMASPEELAEQAKLME-SYGADCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFH 191 (263)
T ss_pred EEe----ccCCCHHHHHHHHHHHH-HcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEE
Confidence 233 34457888777776655 79999999998732 233445555443 3 355555
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=87.41 E-value=7.7 Score=35.41 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=69.6
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHH--HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPS--AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~s--A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
|.+.|++..+++. ||..- |+-..++|.|+|=||-.. +..-..+.|....+.|+...+.| |.
T Consensus 11 ~~~~~~~~~~~~d-------~~~i~~~A~~~~~~GAdiIDVg~~~---------~~~eE~~r~~~~v~~l~~~~~~p-ls 73 (261)
T PRK07535 11 TRKSIAEAIEAKD-------AAFIQKLALKQAEAGADYLDVNAGT---------AVEEEPETMEWLVETVQEVVDVP-LC 73 (261)
T ss_pred hhHHHHHHHHcCC-------HHHHHHHHHHHHHCCCCEEEECCCC---------CchhHHHHHHHHHHHHHHhCCCC-EE
Confidence 4566777666553 23333 334457899999887431 22334666777888887666655 57
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC-CCchHHHHHHHHHcCCceee-cc---CCcccc
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG-SPSRITAARGIVEAGIAVMG-HV---GLTPQA 221 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg-~~~~~~~i~~L~~~GIPV~G-Hi---GLtPQ~ 221 (243)
.|. |. .++++.|.+.++ |++.|+==.+ .+..+.+++.+.+.|.||+. |. | +|++
T Consensus 74 IDT----~~---~~v~eaaL~~~~--G~~iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~g-~P~t 132 (261)
T PRK07535 74 IDS----PN---PAAIEAGLKVAK--GPPLINSVSAEGEKLEVVLPLVKKYNAPVVALTMDDTG-IPKD 132 (261)
T ss_pred EeC----CC---HHHHHHHHHhCC--CCCEEEeCCCCCccCHHHHHHHHHhCCCEEEEecCCCC-CCCC
Confidence 773 42 445555555553 8888874333 22234556667788999996 54 4 5654
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=87.38 E-value=2.4 Score=39.57 Aligned_cols=73 Identities=21% Similarity=0.296 Sum_probs=45.8
Q ss_pred HHHHHHHHcCCCEEEeC-cchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVG-DSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 103 ~sA~iae~AGiDiILVG-DSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
..|+.++++|+|.|.+- -.-....-| +..+ ...+.|++.++.| |++. |+- .|++++ .++++
T Consensus 153 ~~a~~le~~G~d~i~vh~rt~~~~~~G-----~a~~----~~i~~ik~~~~iP-VI~n---GgI-~s~~da----~~~l~ 214 (321)
T PRK10415 153 EIAQLAEDCGIQALTIHGRTRACLFNG-----EAEY----DSIRAVKQKVSIP-VIAN---GDI-TDPLKA----RAVLD 214 (321)
T ss_pred HHHHHHHHhCCCEEEEecCccccccCC-----CcCh----HHHHHHHHhcCCc-EEEe---CCC-CCHHHH----HHHHh
Confidence 46788999999988543 221111222 2233 3456777777777 4543 233 367777 56777
Q ss_pred HhCCCEEEeCCC
Q 026125 182 EGGMDAIKLEGG 193 (243)
Q Consensus 182 eaGAdaVKLEGg 193 (243)
++|||+|.+--|
T Consensus 215 ~~gadgVmiGR~ 226 (321)
T PRK10415 215 YTGADALMIGRA 226 (321)
T ss_pred ccCCCEEEEChH
Confidence 789999999633
|
|
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.23 E-value=10 Score=35.36 Aligned_cols=111 Identities=15% Similarity=0.253 Sum_probs=71.0
Q ss_pred hCCCcEEEE--ecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC---CC------cEE
Q 026125 89 KNGEPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK---RP------LLV 157 (243)
Q Consensus 89 k~g~~Itml--TAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~---~~------fvV 157 (243)
+..-|+++= -+.|......|=++|++.+.+-.| ..+++|-+..++.|++-+. -+ .|-
T Consensus 72 ~~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~S------------~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vg 139 (286)
T PRK06801 72 RHDIPVVLNLDHGLHFEAVVRALRLGFSSVMFDGS------------TLEYEENVRQTREVVKMCHAVGVSVEAELGAVG 139 (286)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHhCCcEEEEcCC------------CCCHHHHHHHHHHHHHHHHHcCCeEEeecCccc
Confidence 344564443 467888888888999998877433 3478999999998865331 11 110
Q ss_pred -eeCC----C-C--CCcCCHHHHHHHHHHHHHHhCCCEEEeCC--------C-CCchHHHHHHHHHc-CCceeeccC
Q 026125 158 -GDLP----F-G--TYESSTNQAVDTAVRILKEGGMDAIKLEG--------G-SPSRITAARGIVEA-GIAVMGHVG 216 (243)
Q Consensus 158 -aDmP----f-g--sY~~s~e~Av~nA~Rl~keaGAdaVKLEG--------g-~~~~~~~i~~L~~~-GIPV~GHiG 216 (243)
.|.+ . + .| .+++++ .+++++.|+|.+.+-= + .....+.++.+.+. +||++-|=|
T Consensus 140 g~e~~v~~~~~~~~~~-T~pe~a----~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGG 211 (286)
T PRK06801 140 GDEGGALYGEADSAKF-TDPQLA----RDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGG 211 (286)
T ss_pred CCCCCcccCCcccccC-CCHHHH----HHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECC
Confidence 1111 0 1 25 578888 6788889999998811 1 12334456666654 699999966
|
|
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=87.13 E-value=8.5 Score=34.62 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=61.0
Q ss_pred HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCC
Q 026125 107 HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGM 185 (243)
Q Consensus 107 iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGA 185 (243)
..-++|+|-+++..|.|=. -..|.||-..-.+.+++.+. +..|++-.. ..|.+++++.|... ++.||
T Consensus 29 ~l~~~Gv~gl~v~GstGE~-------~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~----~~~~~~~~~~a~~a-~~~G~ 96 (284)
T cd00950 29 FQIENGTDGLVVCGTTGES-------PTLSDEEHEAVIEAVVEAVNGRVPVIAGTG----SNNTAEAIELTKRA-EKAGA 96 (284)
T ss_pred HHHHcCCCEEEECCCCcch-------hhCCHHHHHHHHHHHHHHhCCCCcEEeccC----CccHHHHHHHHHHH-HHcCC
Confidence 3446899999877665432 35788997777776666554 233444432 24778999988655 57999
Q ss_pred CEEEeCCCC------CchHHHHHHHHH-cCCcee
Q 026125 186 DAIKLEGGS------PSRITAARGIVE-AGIAVM 212 (243)
Q Consensus 186 daVKLEGg~------~~~~~~i~~L~~-~GIPV~ 212 (243)
|+|-+---. +......+.+.+ .++||+
T Consensus 97 d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~ 130 (284)
T cd00950 97 DAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVI 130 (284)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 999886331 123344556666 478888
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=86.93 E-value=5.5 Score=35.70 Aligned_cols=99 Identities=22% Similarity=0.154 Sum_probs=57.9
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHc---ccCCCcEE-eeCCCC---CCcCCHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR---GAKRPLLV-GDLPFG---TYESSTNQAVDTAV 177 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~R---ga~~~fvV-aDmPfg---sY~~s~e~Av~nA~ 177 (243)
+..+-+.|+|.+-+-+..+. + +-.|++..+++|++ ..+.||++ .. +.| ++ .++ +.+..+.
T Consensus 96 v~~al~~Ga~~v~~~~~~g~------~----~~~~~~~~~~~i~~~~~~~g~~liv~~~-~~Gvh~~~-~~~-~~~~~~~ 162 (258)
T TIGR01949 96 VEDAIRMGADAVSIHVNVGS------D----TEWEQIRDLGMIAEICDDWGVPLLAMMY-PRGPHIDD-RDP-ELVAHAA 162 (258)
T ss_pred HHHHHHCCCCEEEEEEecCC------c----hHHHHHHHHHHHHHHHHHcCCCEEEEEe-ccCccccc-ccH-HHHHHHH
Confidence 55566889998866655431 1 22344555555554 34567666 22 221 22 233 3444544
Q ss_pred HHHHHhCCCEEEeCCCCCchHHHHHHHHH-cCCceeeccCCc
Q 026125 178 RILKEGGMDAIKLEGGSPSRITAARGIVE-AGIAVMGHVGLT 218 (243)
Q Consensus 178 Rl~keaGAdaVKLEGg~~~~~~~i~~L~~-~GIPV~GHiGLt 218 (243)
+...+.|||-||+.... -...++.+++ ..+||..==|.+
T Consensus 163 ~~a~~~GADyikt~~~~--~~~~l~~~~~~~~iPVva~GGi~ 202 (258)
T TIGR01949 163 RLGAELGADIVKTPYTG--DIDSFRDVVKGCPAPVVVAGGPK 202 (258)
T ss_pred HHHHHHCCCEEeccCCC--CHHHHHHHHHhCCCcEEEecCCC
Confidence 56667999999997553 2345677876 579998744455
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=86.83 E-value=13 Score=32.84 Aligned_cols=104 Identities=16% Similarity=0.174 Sum_probs=64.4
Q ss_pred EEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHH
Q 026125 94 ITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAV 173 (243)
Q Consensus 94 ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av 173 (243)
|-+.+-.+...|..+.++|+|++-+ .+--.+--.|+.++.-.-++.+.... . .|+= | ...++++.
T Consensus 5 vKICGi~~~eda~~~~~~Gad~iGf-------I~~~~S~R~V~~~~a~~i~~~~~~~i--~-~VgV--f--~~~~~~~i- 69 (210)
T PRK01222 5 VKICGITTPEDAEAAAELGADAIGF-------VFYPKSPRYVSPEQAAELAAALPPFV--K-VVGV--F--VNASDEEI- 69 (210)
T ss_pred EEECCCCcHHHHHHHHHcCCCEEEE-------ccCCCCCCcCCHHHHHHHHHhCCCCC--C-EEEE--E--eCCCHHHH-
Confidence 5566778889999999999999843 12233556788887554444332111 1 1210 1 12355665
Q ss_pred HHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHc-CCceeeccCC
Q 026125 174 DTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGHVGL 217 (243)
Q Consensus 174 ~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~GHiGL 217 (243)
.+++++.+-|.|+|.|... ...++.|.+. +++|+==+..
T Consensus 70 ---~~~~~~~~~d~vQLHg~e~--~~~~~~l~~~~~~~iik~i~v 109 (210)
T PRK01222 70 ---DEIVETVPLDLLQLHGDET--PEFCRQLKRRYGLPVIKALRV 109 (210)
T ss_pred ---HHHHHhcCCCEEEECCCCC--HHHHHHHHhhcCCcEEEEEec
Confidence 5677889999999998753 4446777763 5776544433
|
|
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=86.81 E-value=5.9 Score=40.41 Aligned_cols=117 Identities=21% Similarity=0.259 Sum_probs=72.7
Q ss_pred HHHHHHhhhCCCcEEEEec------CC-------HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHH
Q 026125 81 LTHLRQKHKNGEPITMVTA------YD-------YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAV 147 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTA------YD-------~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV 147 (243)
+..|++.. .+.++.|+.= |. -.+...+.++|+|++-+-|++.-+ +.|...++.+
T Consensus 66 l~~l~~~~-~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~i~~a 132 (592)
T PRK09282 66 LRKLKKAL-PNTPLQMLLRGQNLVGYRHYPDDVVEKFVEKAAENGIDIFRIFDALNDV------------RNMEVAIKAA 132 (592)
T ss_pred HHHHHHhC-CCCEEEEEeccccccccccccchhhHHHHHHHHHCCCCEEEEEEecChH------------HHHHHHHHHH
Confidence 44555543 4578888721 22 124667778999999999988543 4566666666
Q ss_pred HcccCCCcEEe--eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc-CCceeec
Q 026125 148 ARGAKRPLLVG--DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 148 ~Rga~~~fvVa--DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~-GIPV~GH 214 (243)
++.- . .+.+ .+-+..+ .+++..++.+.++. ++|||.|.|-|-.. .+..++++|.++ ++|+-=|
T Consensus 133 k~~G-~-~v~~~i~~t~~p~-~t~~~~~~~a~~l~-~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~~pi~~H 203 (592)
T PRK09282 133 KKAG-A-HVQGTISYTTSPV-HTIEKYVELAKELE-EMGCDSICIKDMAGLLTPYAAYELVKALKEEVDLPVQLH 203 (592)
T ss_pred HHcC-C-EEEEEEEeccCCC-CCHHHHHHHHHHHH-HcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCCCeEEEE
Confidence 5422 1 1222 2222334 37888999888887 69999999998732 344556776654 5666544
|
|
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=86.73 E-value=1.9 Score=38.78 Aligned_cols=70 Identities=23% Similarity=0.271 Sum_probs=52.4
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG 184 (243)
++.+.++|+|.|.+.|++|. .+-+++-..++.+++..+. ..+.|-. +.+..-|+.|+...+ ++|
T Consensus 147 ~~~~~~~G~d~i~l~DT~G~----------~~P~~v~~lv~~l~~~~~~----~~l~~H~-Hn~~GlA~AN~laAi-~aG 210 (263)
T cd07943 147 AKLMESYGADCVYVTDSAGA----------MLPDDVRERVRALREALDP----TPVGFHG-HNNLGLAVANSLAAV-EAG 210 (263)
T ss_pred HHHHHHcCCCEEEEcCCCCC----------cCHHHHHHHHHHHHHhCCC----ceEEEEe-cCCcchHHHHHHHHH-HhC
Confidence 45667889999999999874 4666777777888877664 1234433 468889999999999 589
Q ss_pred CCEEEe
Q 026125 185 MDAIKL 190 (243)
Q Consensus 185 AdaVKL 190 (243)
|+.|--
T Consensus 211 a~~vd~ 216 (263)
T cd07943 211 ATRIDG 216 (263)
T ss_pred CCEEEe
Confidence 997653
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea | Back alignment and domain information |
|---|
Probab=86.71 E-value=10 Score=34.52 Aligned_cols=104 Identities=15% Similarity=0.126 Sum_probs=67.9
Q ss_pred HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 026125 107 HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (243)
Q Consensus 107 iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAd 186 (243)
..-+.|+|-|++..|.|= ...+|.+|=..-++.+++.+. . +++... + .|.+++++.|... ++.|||
T Consensus 28 ~l~~~Gv~Gl~~~GstGE-------~~~Lt~eEr~~l~~~~~~~~~-~-vi~gvg--~--~~~~~ai~~a~~a-~~~Gad 93 (279)
T cd00953 28 NLISKGIDYVFVAGTTGL-------GPSLSFQEKLELLKAYSDITD-K-VIFQVG--S--LNLEESIELARAA-KSFGIY 93 (279)
T ss_pred HHHHcCCcEEEEcccCCC-------cccCCHHHHHHHHHHHHHHcC-C-EEEEeC--c--CCHHHHHHHHHHH-HHcCCC
Confidence 345689999987656543 245788997777777777664 3 555543 2 4789999988665 479999
Q ss_pred EEEeCCC-------CCchHHHHHHHHHcCCceeec-------cCCcccccccc
Q 026125 187 AIKLEGG-------SPSRITAARGIVEAGIAVMGH-------VGLTPQAISVL 225 (243)
Q Consensus 187 aVKLEGg-------~~~~~~~i~~L~~~GIPV~GH-------iGLtPQ~~~~~ 225 (243)
+|-+=-- .+......+.+.+ ++||+=. +-|.|+....+
T Consensus 94 ~v~v~~P~y~~~~~~~~i~~yf~~v~~-~lpv~iYn~P~~tg~~l~~~~l~~L 145 (279)
T cd00953 94 AIASLPPYYFPGIPEEWLIKYFTDISS-PYPTFIYNYPKATGYDINARMAKEI 145 (279)
T ss_pred EEEEeCCcCCCCCCHHHHHHHHHHHHh-cCCEEEEeCccccCCCCCHHHHHHH
Confidence 9987222 1122233566788 9999843 33566555544
|
This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=86.53 E-value=16 Score=33.44 Aligned_cols=116 Identities=21% Similarity=0.292 Sum_probs=63.2
Q ss_pred CCCHHHHHHhhhCCCc-EEEE-ecCCHH----HHHHHHHcCCCEEEeC-cchhhhhccCCCCccCCHHHHHHHHHHHHcc
Q 026125 78 RVTLTHLRQKHKNGEP-ITMV-TAYDYP----SAVHLDSAGIDICLVG-DSAAMVVHGHDTTLPITLEEMLVHCRAVARG 150 (243)
Q Consensus 78 ~~tv~~Lr~~kk~g~~-Itml-TAYD~~----sA~iae~AGiDiILVG-DSlgmv~lG~~dT~~vTldeMi~h~~aV~Rg 150 (243)
..+..++++... .| ..-+ ..+|.. .+..+++.|+|+|.+. |... .|. . ..+ ...+.+++.
T Consensus 104 ~~~~~~i~~~~~--~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~---~~~--~--~~~----~~i~~l~~~ 170 (299)
T cd02809 104 TTSLEEVAAAAP--GPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPV---LGR--R--LTW----DDLAWLRSQ 170 (299)
T ss_pred cCCHHHHHHhcC--CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC---CCC--C--CCH----HHHHHHHHh
Confidence 457777876532 33 2222 223543 3445577899988542 2221 111 1 122 345678888
Q ss_pred cCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCC--CCC-----chHHHHHHHHH---cCCceeeccCC
Q 026125 151 AKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG--GSP-----SRITAARGIVE---AGIAVMGHVGL 217 (243)
Q Consensus 151 a~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEG--g~~-----~~~~~i~~L~~---~GIPV~GHiGL 217 (243)
++.|+++-.. .+++++ .++. ++|||+|-+.+ |.. .....+..+.+ ..|||++-=|+
T Consensus 171 ~~~pvivK~v------~s~~~a----~~a~-~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI 236 (299)
T cd02809 171 WKGPLILKGI------LTPEDA----LRAV-DAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGI 236 (299)
T ss_pred cCCCEEEeec------CCHHHH----HHHH-HCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCC
Confidence 8888777643 355554 4555 69999999954 221 12233444433 25888876444
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >PRK08227 autoinducer 2 aldolase; Validated | Back alignment and domain information |
|---|
Probab=86.51 E-value=1.7 Score=40.12 Aligned_cols=81 Identities=15% Similarity=0.201 Sum_probs=57.7
Q ss_pred hhhCCCcEEEEecCC----------HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 87 KHKNGEPITMVTAYD----------YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 87 ~kk~g~~ItmlTAYD----------~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
..+-|-|+..+.+.- +.-|+++.|.|.|+|=|-.+ . |. -+.|.++++.|.|
T Consensus 136 a~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y~---------~------~~----f~~vv~a~~vPVv 196 (264)
T PRK08227 136 GLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYYV---------E------EG----FERITAGCPVPIV 196 (264)
T ss_pred HHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecCCC---------H------HH----HHHHHHcCCCcEE
Confidence 456677877654321 23489999999999977632 0 11 1346668999999
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
++.=|= .+.++.++.+...++ +||.+|-+=
T Consensus 197 iaGG~k----~~~~~~L~~v~~ai~-aGa~Gv~~G 226 (264)
T PRK08227 197 IAGGKK----LPERDALEMCYQAID-EGASGVDMG 226 (264)
T ss_pred EeCCCC----CCHHHHHHHHHHHHH-cCCceeeec
Confidence 887654 367889999999995 999999773
|
|
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=86.50 E-value=10 Score=35.65 Aligned_cols=134 Identities=10% Similarity=-0.004 Sum_probs=74.0
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEe--Cc--chhhhhccCC----CC----ccCCHHHHHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV--GD--SAAMVVHGHD----TT----LPITLEEMLVHC 144 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILV--GD--Slgmv~lG~~----dT----~~vTldeMi~h~ 144 (243)
+.+|..++.+..+. | .-.|+.+.+||+|.|-+ |. =+...+--+- |- ..--+.-+++..
T Consensus 140 ~~mt~~eI~~ii~~---------f-~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii 209 (338)
T cd02933 140 RALTTEEIPGIVAD---------F-RQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVV 209 (338)
T ss_pred CCCCHHHHHHHHHH---------H-HHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHH
Confidence 46888888876532 1 24788899999999944 21 1111111100 10 111233356777
Q ss_pred HHHHcccCCCcEEeeCC------CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc------hHHHHHHHHH-cCCce
Q 026125 145 RAVARGAKRPLLVGDLP------FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS------RITAARGIVE-AGIAV 211 (243)
Q Consensus 145 ~aV~Rga~~~fvVaDmP------fgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~------~~~~i~~L~~-~GIPV 211 (243)
++|++.++.-+|..=+. -+.++.+.|+.++.+..+. +.|+|.|.+.+|... ....++.+.+ -+|||
T Consensus 210 ~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~-~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipv 288 (338)
T cd02933 210 DAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELN-KRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPL 288 (338)
T ss_pred HHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHH-HcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCE
Confidence 88888765423443231 1123447889888877665 689999999666321 1122222222 26899
Q ss_pred eeccCCcccc
Q 026125 212 MGHVGLTPQA 221 (243)
Q Consensus 212 ~GHiGLtPQ~ 221 (243)
++==|++|+.
T Consensus 289 i~~G~i~~~~ 298 (338)
T cd02933 289 IAAGGYDAES 298 (338)
T ss_pred EEECCCCHHH
Confidence 8754444443
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=86.43 E-value=7.1 Score=38.86 Aligned_cols=94 Identities=12% Similarity=0.161 Sum_probs=60.2
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE--eeCCCCCCcCCHHHHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV--GDLPFGTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV--aDmPfgsY~~s~e~Av~nA~Rl~ke 182 (243)
-+.+-++|+|++-+-|++.- ++.|...++.+++.- . .+. .+.-|+.. .+++..++.|.++. +
T Consensus 101 v~~A~~~Gvd~irif~~lnd------------~~n~~~~i~~ak~~G-~-~v~~~i~~t~~p~-~t~e~~~~~a~~l~-~ 164 (467)
T PRK14041 101 VKKVAEYGLDIIRIFDALND------------IRNLEKSIEVAKKHG-A-HVQGAISYTVSPV-HTLEYYLEFARELV-D 164 (467)
T ss_pred HHHHHHCCcCEEEEEEeCCH------------HHHHHHHHHHHHHCC-C-EEEEEEEeccCCC-CCHHHHHHHHHHHH-H
Confidence 36677889999999988854 345555555554322 1 233 23333333 36788888887776 6
Q ss_pred hCCCEEEeCCCCC-----chHHHHHHHHHc-CCceeec
Q 026125 183 GGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 183 aGAdaVKLEGg~~-----~~~~~i~~L~~~-GIPV~GH 214 (243)
.|||.|.|-|-.. .+..++++|.++ ++|+-=|
T Consensus 165 ~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~vpI~~H 202 (467)
T PRK14041 165 MGVDSICIKDMAGLLTPKRAYELVKALKKKFGVPVEVH 202 (467)
T ss_pred cCCCEEEECCccCCcCHHHHHHHHHHHHHhcCCceEEE
Confidence 9999999998733 244556666654 6776555
|
|
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=86.36 E-value=11 Score=34.46 Aligned_cols=106 Identities=19% Similarity=0.157 Sum_probs=67.6
Q ss_pred HHHcC-CCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCC
Q 026125 108 LDSAG-IDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGM 185 (243)
Q Consensus 108 ae~AG-iDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGA 185 (243)
.-++| +|.|+++.|.|= ...+|.||-..-++.+++.++ +..|++.... .+.+++++.+... ++.||
T Consensus 30 ~i~~G~v~gi~~~GstGE-------~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~----~~t~~~i~la~~a-~~~Ga 97 (290)
T TIGR00683 30 NIDKMKVDGLYVGGSTGE-------NFMLSTEEKKEIFRIAKDEAKDQIALIAQVGS----VNLKEAVELGKYA-TELGY 97 (290)
T ss_pred HHhCCCcCEEEECCcccc-------cccCCHHHHHHHHHHHHHHhCCCCcEEEecCC----CCHHHHHHHHHHH-HHhCC
Confidence 45678 999988766643 235788987777776665443 3335655433 4678998888664 57999
Q ss_pred CEEEeCCC------CCchHHHHHHHHHc--CCcee-------eccCCcccccccc
Q 026125 186 DAIKLEGG------SPSRITAARGIVEA--GIAVM-------GHVGLTPQAISVL 225 (243)
Q Consensus 186 daVKLEGg------~~~~~~~i~~L~~~--GIPV~-------GHiGLtPQ~~~~~ 225 (243)
|+|-+--- .+......+.+.++ ++||+ .+..|.|+....+
T Consensus 98 d~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L 152 (290)
T TIGR00683 98 DCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGEL 152 (290)
T ss_pred CEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHH
Confidence 99988322 12233334556553 68885 5666766655544
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=86.26 E-value=3 Score=36.06 Aligned_cols=66 Identities=24% Similarity=0.238 Sum_probs=39.6
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ke 182 (243)
-.|+..+++|+|.|-+=|--+. +..-....+.|++..+.|+++.| |-.+++++ +.+.+
T Consensus 35 ~~A~~~~~~GA~~l~v~~~~~~------------~~g~~~~~~~i~~~v~iPi~~~~-----~i~~~~~v-----~~~~~ 92 (217)
T cd00331 35 EIAKAYEKAGAAAISVLTEPKY------------FQGSLEDLRAVREAVSLPVLRKD-----FIIDPYQI-----YEARA 92 (217)
T ss_pred HHHHHHHHcCCCEEEEEeCccc------------cCCCHHHHHHHHHhcCCCEEECC-----eecCHHHH-----HHHHH
Confidence 3577889999999955332111 11112455667776677866543 33455544 44457
Q ss_pred hCCCEEEe
Q 026125 183 GGMDAIKL 190 (243)
Q Consensus 183 aGAdaVKL 190 (243)
+|||+|.+
T Consensus 93 ~Gad~v~l 100 (217)
T cd00331 93 AGADAVLL 100 (217)
T ss_pred cCCCEEEE
Confidence 99999985
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=86.13 E-value=5.5 Score=38.37 Aligned_cols=94 Identities=23% Similarity=0.362 Sum_probs=61.6
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhh-------ccCCCCccCCHHHHHHHHHHHHcccC
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVV-------HGHDTTLPITLEEMLVHCRAVARGAK 152 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~-------lG~~dT~~vTldeMi~h~~aV~Rga~ 152 (243)
.+..|++.+- .-+|..=++=++..|.-..++|+|.|.||=.-|.++ .|+| .---++.|..+++...
T Consensus 139 ~ik~ik~~~~-~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~P------Q~tAv~~~a~~a~~~~ 211 (352)
T PF00478_consen 139 MIKKIKKKFP-DVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVP------QLTAVYECAEAARDYG 211 (352)
T ss_dssp HHHHHHHHST-TSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCT------HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhCC-CceEEecccCCHHHHHHHHHcCCCEEEEeccCCcccccccccccCCc------HHHHHHHHHHHhhhcc
Confidence 3455555432 356677789999999999999999999996555544 2444 3334677777777665
Q ss_pred CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 153 ~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
-| ||+|=.. . +.-+. .+.+ .+|||+|.+
T Consensus 212 v~-iIADGGi---~-~sGDi----~KAl-a~GAd~VMl 239 (352)
T PF00478_consen 212 VP-IIADGGI---R-TSGDI----VKAL-AAGADAVML 239 (352)
T ss_dssp SE-EEEESS----S-SHHHH----HHHH-HTT-SEEEE
T ss_pred Cc-eeecCCc---C-cccce----eeee-eecccceee
Confidence 44 8999655 2 34555 3455 589999998
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=85.59 E-value=13 Score=34.64 Aligned_cols=119 Identities=14% Similarity=0.151 Sum_probs=69.2
Q ss_pred EEEecCCHHH----HHHHHHcCCCEEE--eCcchhh-hhccCCCCccCCHHHHHHHHHHHHcccCCCcEE-eeCCCCCCc
Q 026125 95 TMVTAYDYPS----AVHLDSAGIDICL--VGDSAAM-VVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-GDLPFGTYE 166 (243)
Q Consensus 95 tmlTAYD~~s----A~iae~AGiDiIL--VGDSlgm-v~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV-aDmPfgsY~ 166 (243)
+.+...|... |+++++.|+|.|= .|=.... +-.|.-+...-..+-+...+++|+.+.+.|+.+ .-.+| .
T Consensus 69 vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~---~ 145 (321)
T PRK10415 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGW---A 145 (321)
T ss_pred EEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccc---c
Confidence 4455555443 6667788999993 4433322 223333333444566677778888887666443 33333 2
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCCC-------chHHHHHHHHH-cCCceeeccCC
Q 026125 167 SSTNQAVDTAVRILKEGGMDAIKLEGGSP-------SRITAARGIVE-AGIAVMGHVGL 217 (243)
Q Consensus 167 ~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-------~~~~~i~~L~~-~GIPV~GHiGL 217 (243)
.+.+++++.|.++ +++|+|++-+.|... -..+.|+.+.+ -+|||+|==|+
T Consensus 146 ~~~~~~~~~a~~l-e~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI 203 (321)
T PRK10415 146 PEHRNCVEIAQLA-EDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDI 203 (321)
T ss_pred CCcchHHHHHHHH-HHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCC
Confidence 3445666666554 478999998876521 11234555555 47999986555
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=85.39 E-value=3.3 Score=38.69 Aligned_cols=96 Identities=19% Similarity=0.270 Sum_probs=58.4
Q ss_pred CcEEEEe--cCC-----HHHHHHHHHcCCCEEEe-CcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC
Q 026125 92 EPITMVT--AYD-----YPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG 163 (243)
Q Consensus 92 ~~ItmlT--AYD-----~~sA~iae~AGiDiILV-GDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg 163 (243)
-|+++=. -|| ...|++++++|+|+|-| |-. ...||.-. ++.+ ...+.|++..+.| |++. |
T Consensus 134 ~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt---~~~~y~g~-~~~~----~~i~~ik~~~~iP-Vi~n---G 201 (312)
T PRK10550 134 LPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRT---KEDGYRAE-HINW----QAIGEIRQRLTIP-VIAN---G 201 (312)
T ss_pred cceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCC---CccCCCCC-cccH----HHHHHHHhhcCCc-EEEe---C
Confidence 5777653 243 25778899999999966 322 23344321 2234 3455677777777 4543 2
Q ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHH
Q 026125 164 TYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGI 204 (243)
Q Consensus 164 sY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L 204 (243)
+- .|++++ .++++++|||+|.+--|.-..+.+.+.+
T Consensus 202 dI-~t~~da----~~~l~~~g~DgVmiGRg~l~nP~lf~~~ 237 (312)
T PRK10550 202 EI-WDWQSA----QQCMAITGCDAVMIGRGALNIPNLSRVV 237 (312)
T ss_pred Cc-CCHHHH----HHHHhccCCCEEEEcHHhHhCcHHHHHh
Confidence 33 477888 5677789999999966633334444433
|
|
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=85.26 E-value=13 Score=32.00 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=60.7
Q ss_pred HHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC
Q 026125 83 HLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF 162 (243)
Q Consensus 83 ~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf 162 (243)
.+++.++.+.+ .++.+++...++.++++|+|.|.+... . .-|+.........+ ..+.+++..+.| +++.-
T Consensus 94 ~~~~~~~~~i~-~i~~v~~~~~~~~~~~~gad~i~~~~~-~--~~G~~~~~~~~~~~---~i~~i~~~~~~P-vi~~G-- 163 (236)
T cd04730 94 VVERLKAAGIK-VIPTVTSVEEARKAEAAGADALVAQGA-E--AGGHRGTFDIGTFA---LVPEVRDAVDIP-VIAAG-- 163 (236)
T ss_pred HHHHHHHcCCE-EEEeCCCHHHHHHHHHcCCCEEEEeCc-C--CCCCCCccccCHHH---HHHHHHHHhCCC-EEEEC--
Confidence 34444444444 566778888899999999998875322 1 12333322222233 334555555666 45543
Q ss_pred CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC------CCchHHHHHHHHHcCC
Q 026125 163 GTYESSTNQAVDTAVRILKEGGMDAIKLEGG------SPSRITAARGIVEAGI 209 (243)
Q Consensus 163 gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg------~~~~~~~i~~L~~~GI 209 (243)
+. .+++++ .+++ +.|||+|-+-.. ......+.+.|.+.+.
T Consensus 164 -GI-~~~~~v----~~~l-~~GadgV~vgS~l~~~~e~~~~~~~~~~~~~~~~ 209 (236)
T cd04730 164 -GI-ADGRGI----AAAL-ALGADGVQMGTRFLATEESGASPAYKQALLAATA 209 (236)
T ss_pred -CC-CCHHHH----HHHH-HcCCcEEEEchhhhcCcccCCCHHHHHHHHcCCC
Confidence 33 234554 5566 489999988433 1112344566666665
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >TIGR02990 ectoine_eutA ectoine utilization protein EutA | Back alignment and domain information |
|---|
Probab=85.18 E-value=7.3 Score=35.21 Aligned_cols=88 Identities=20% Similarity=0.196 Sum_probs=58.2
Q ss_pred CCCcEEEEecCCHH----HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCC
Q 026125 90 NGEPITMVTAYDYP----SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTY 165 (243)
Q Consensus 90 ~g~~ItmlTAYD~~----sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY 165 (243)
+=++|.++|.|... .....+++||++.-.+. + |.++. .-|+.
T Consensus 119 g~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~-~-----~~~~~----------------------~~ia~------ 164 (239)
T TIGR02990 119 GVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTC-L-----GLTDD----------------------REMAR------ 164 (239)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeec-c-----CCCCC----------------------ceeee------
Confidence 33899999999764 45567889999986541 2 22211 01111
Q ss_pred cCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHH-HHcCCceee
Q 026125 166 ESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGI-VEAGIAVMG 213 (243)
Q Consensus 166 ~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L-~~~GIPV~G 213 (243)
.+++...+.+.++- ..+||+|.+-+..-...++|+.| .+-|+||.-
T Consensus 165 -i~p~~i~~~~~~~~-~~~aDAifisCTnLrt~~vi~~lE~~lGkPVls 211 (239)
T TIGR02990 165 -ISPDCIVEAALAAF-DPDADALFLSCTALRAATCAQRIEQAIGKPVVT 211 (239)
T ss_pred -cCHHHHHHHHHHhc-CCCCCEEEEeCCCchhHHHHHHHHHHHCCCEEE
Confidence 35666655555554 57899999998876677778877 556999963
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens. |
| >PRK02227 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.02 E-value=6.8 Score=35.95 Aligned_cols=79 Identities=20% Similarity=0.268 Sum_probs=50.8
Q ss_pred EEecCCHHHHHHHHHcCCCEEEeCc----chhhhhccCCCCccCCHHHHHHHHHHHHcc-cCCCcEEeeCCCCCCcCCHH
Q 026125 96 MVTAYDYPSAVHLDSAGIDICLVGD----SAAMVVHGHDTTLPITLEEMLVHCRAVARG-AKRPLLVGDLPFGTYESSTN 170 (243)
Q Consensus 96 mlTAYD~~sA~iae~AGiDiILVGD----Slgmv~lG~~dT~~vTldeMi~h~~aV~Rg-a~~~fvVaDmPfgsY~~s~e 170 (243)
.+.+-|..+|..+-++|.|+|=+=| |||. -..+.|....+...+ .+.+-.++|+|+.. .
T Consensus 4 LvSvr~~eEA~~Al~~GaDiIDvK~P~~GaLGA-----------~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p-----~ 67 (238)
T PRK02227 4 LVSVRNLEEALEALAGGADIIDVKNPKEGSLGA-----------NFPWVIREIVAAVPGRKPVSATIGDVPYKP-----G 67 (238)
T ss_pred eeccCCHHHHHHHHhcCCCEEEccCCCCCCCCC-----------CCHHHHHHHHHHhCCCCCceeeccCCCCCc-----h
Confidence 4577889999999999999997654 4433 223344444444443 44455679999833 3
Q ss_pred HHHHHHHHHHHHhCCCEEEeC
Q 026125 171 QAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 171 ~Av~nA~Rl~keaGAdaVKLE 191 (243)
.+...+.... ++|+|-||+=
T Consensus 68 ~~~~aa~~~a-~~GvDyVKvG 87 (238)
T PRK02227 68 TISLAALGAA-ATGADYVKVG 87 (238)
T ss_pred HHHHHHHHHH-hhCCCEEEEc
Confidence 3333344444 6899999983
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=84.97 E-value=5.8 Score=36.02 Aligned_cols=81 Identities=20% Similarity=0.162 Sum_probs=46.3
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCC--------CccCC----HHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDT--------TLPIT----LEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTN 170 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~d--------T~~vT----ldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e 170 (243)
..|+.++++|+|.|-+..++........+ ++.++ ..--+..++.+++..+.| |++. |+. .|++
T Consensus 173 ~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ip-vi~~---GGI-~s~~ 247 (300)
T TIGR01037 173 EIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIP-IIGV---GGI-TSFE 247 (300)
T ss_pred HHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCC-EEEE---CCC-CCHH
Confidence 45788999999999764333210000000 01111 111245566777777766 4543 345 4788
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCC
Q 026125 171 QAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 171 ~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
++ .+++. .|||+|.+=-+
T Consensus 248 da----~~~l~-~GAd~V~igr~ 265 (300)
T TIGR01037 248 DA----LEFLM-AGASAVQVGTA 265 (300)
T ss_pred HH----HHHHH-cCCCceeecHH
Confidence 88 56774 89999987433
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >PRK07534 methionine synthase I; Validated | Back alignment and domain information |
|---|
Probab=84.93 E-value=6.1 Score=37.40 Aligned_cols=123 Identities=24% Similarity=0.248 Sum_probs=66.3
Q ss_pred HcCCCEEEeCcchhhhh--ccCCCCccCCHHHHHHH----HHHHHccc-CCCcEEeeC-CCCCCc-----CCHHHHH---
Q 026125 110 SAGIDICLVGDSAAMVV--HGHDTTLPITLEEMLVH----CRAVARGA-KRPLLVGDL-PFGTYE-----SSTNQAV--- 173 (243)
Q Consensus 110 ~AGiDiILVGDSlgmv~--lG~~dT~~vTldeMi~h----~~aV~Rga-~~~fvVaDm-PfgsY~-----~s~e~Av--- 173 (243)
+||.|+|++- +.+... ++... ..-.++++... ++.++... ...+|.+++ |+|.|- .+.+++.
T Consensus 56 ~AGAdiI~Tn-Ty~as~~~l~~~~-~~~~~~~l~~~av~lAr~a~~~~~~~~~VaGsIGP~g~~l~~~~~~~~~e~~~~~ 133 (336)
T PRK07534 56 DAGSDIILTN-SFGGTAARLKLHD-AQDRVHELNRAAAEIAREVADKAGRKVIVAGSVGPTGEIMEPMGALTHALAVEAF 133 (336)
T ss_pred HhcCCEEEec-CcccCHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCCCccccCCCCCCCHHHHHHHH
Confidence 5788888843 444432 22221 11224454433 33333222 246788998 455531 1344433
Q ss_pred HHHHHHHHHhCCCEEEeCCCC--CchHHHHHHHHHcCCceeeccCCcccccccccCccccccCHHhhcc
Q 026125 174 DTAVRILKEGGMDAIKLEGGS--PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVK 240 (243)
Q Consensus 174 ~nA~Rl~keaGAdaVKLEGg~--~~~~~~i~~L~~~GIPV~GHiGLtPQ~~~~~GGykvqGkt~~~A~~ 240 (243)
+--++.+.++|+|.+-+|=-. .+...+++++.+.++||+--+=+ + -+|.-.-|-+.+++..
T Consensus 134 ~~qi~~l~~~gvD~l~~ET~p~l~E~~a~~~~~~~~~~Pv~vSft~--~----~~g~l~~G~~~~~~~~ 196 (336)
T PRK07534 134 HEQAEGLKAGGADVLWVETISAPEEIRAAAEAAKLAGMPWCGTMSF--D----TAGRTMMGLTPADLAD 196 (336)
T ss_pred HHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHcCCeEEEEEEE--C----CCCeeCCCCcHHHHHH
Confidence 223445557899999999543 23445567777789999965543 2 2345555666555443
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=84.92 E-value=15 Score=31.93 Aligned_cols=70 Identities=17% Similarity=0.175 Sum_probs=43.4
Q ss_pred HHHHHHHHHcCCCEEEeCcc-hhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 102 YPSAVHLDSAGIDICLVGDS-AAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 102 ~~sA~iae~AGiDiILVGDS-lgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
...|+.++++|+|.+++.|- -....-|+ . +...+.+++.++.|++.+. +. .|.+++ .+.+
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g~------~----~~~~~~i~~~~~ipvia~G----Gi-~s~~di----~~~l 216 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTMKGY------D----LELIKTVSDAVSIPVIALG----GA-GSLDDL----VEVA 216 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCcCCC------C----HHHHHHHHhhCCCCEEEEC----CC-CCHHHH----HHHH
Confidence 36678999999998877651 11111222 2 3334667777777855432 33 367777 4545
Q ss_pred HHhCCCEEEe
Q 026125 181 KEGGMDAIKL 190 (243)
Q Consensus 181 keaGAdaVKL 190 (243)
++.||++|-+
T Consensus 217 ~~~gadgV~v 226 (232)
T TIGR03572 217 LEAGASAVAA 226 (232)
T ss_pred HHcCCCEEEE
Confidence 5789999976
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=84.92 E-value=12 Score=34.12 Aligned_cols=105 Identities=23% Similarity=0.190 Sum_probs=65.0
Q ss_pred HHHc-CCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCC
Q 026125 108 LDSA-GIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGM 185 (243)
Q Consensus 108 ae~A-GiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGA 185 (243)
.-++ |+|-|+++.|.|-. ..+|.+|-..-++.+++.+. +..|++...- .|.+++++.|... ++.||
T Consensus 30 l~~~~Gv~gi~~~GstGE~-------~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~----~~~~~ai~~a~~a-~~~Ga 97 (288)
T cd00954 30 LIEKQGVDGLYVNGSTGEG-------FLLSVEERKQIAEIVAEAAKGKVTLIAHVGS----LNLKESQELAKHA-EELGY 97 (288)
T ss_pred HHhcCCCCEEEECcCCcCc-------ccCCHHHHHHHHHHHHHHhCCCCeEEeccCC----CCHHHHHHHHHHH-HHcCC
Confidence 3346 99999887666442 35788887777776665544 3345665432 4778999988655 57999
Q ss_pred CEEEeCCC------CCchHHHHHHHHHc--CCcee-------eccCCccccccc
Q 026125 186 DAIKLEGG------SPSRITAARGIVEA--GIAVM-------GHVGLTPQAISV 224 (243)
Q Consensus 186 daVKLEGg------~~~~~~~i~~L~~~--GIPV~-------GHiGLtPQ~~~~ 224 (243)
|+|-+--- .+......+.+.++ ++||+ .++.|.|+....
T Consensus 98 d~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~ 151 (288)
T cd00954 98 DAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLE 151 (288)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHH
Confidence 99975221 11223334556664 68887 455566654433
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.85 E-value=10 Score=37.99 Aligned_cols=87 Identities=18% Similarity=0.171 Sum_probs=51.0
Q ss_pred EEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCC-ccC-CHHHHHHHHHHHHc-----ccCCCcEEeeCCCCCCc
Q 026125 94 ITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTT-LPI-TLEEMLVHCRAVAR-----GAKRPLLVGDLPFGTYE 166 (243)
Q Consensus 94 ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT-~~v-TldeMi~h~~aV~R-----ga~~~fvVaDmPfgsY~ 166 (243)
|..=|+.++.-|+.+-+||+|.|.||=.-|..+-=..-+ ..+ +++-+...++++++ |...| ||+|=.+ -
T Consensus 287 V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~-viadgGi-r-- 362 (502)
T PRK07107 287 VGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIP-ICSDGGI-V-- 362 (502)
T ss_pred EEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcce-EEEcCCC-C--
Confidence 333369999999999999999999875555222112111 112 33333333333322 32234 8899665 2
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 167 SSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 167 ~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
+.-+. .+.+ .+|||+|.+
T Consensus 363 -~~gdi----~KAl-a~GA~~vm~ 380 (502)
T PRK07107 363 -YDYHM----TLAL-AMGADFIML 380 (502)
T ss_pred -chhHH----HHHH-HcCCCeeee
Confidence 33444 3455 489999988
|
|
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=84.73 E-value=2.9 Score=38.06 Aligned_cols=72 Identities=14% Similarity=0.177 Sum_probs=52.7
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHh
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~kea 183 (243)
.++.+.++|+|.|.+.|++|. .+-+++-...+++++..+... .+.|-+ +.+..-|+.|+...+ ++
T Consensus 143 ~~~~~~~~g~~~i~l~DT~G~----------~~P~~v~~lv~~l~~~~~~~~---~i~~H~-Hn~~Gla~AN~laA~-~a 207 (266)
T cd07944 143 LLELVNEIKPDVFYIVDSFGS----------MYPEDIKRIISLLRSNLDKDI---KLGFHA-HNNLQLALANTLEAI-EL 207 (266)
T ss_pred HHHHHHhCCCCEEEEecCCCC----------CCHHHHHHHHHHHHHhcCCCc---eEEEEe-CCCccHHHHHHHHHH-Hc
Confidence 455677889999999999874 567778888888887665200 123433 368889999999999 58
Q ss_pred CCCEEEe
Q 026125 184 GMDAIKL 190 (243)
Q Consensus 184 GAdaVKL 190 (243)
||+.|-.
T Consensus 208 Ga~~vd~ 214 (266)
T cd07944 208 GVEIIDA 214 (266)
T ss_pred CCCEEEE
Confidence 9988754
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=84.66 E-value=29 Score=32.37 Aligned_cols=145 Identities=10% Similarity=0.088 Sum_probs=93.5
Q ss_pred CCHHH-HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC
Q 026125 79 VTLTH-LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK 152 (243)
Q Consensus 79 ~tv~~-Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~ 152 (243)
+|..+ |+..++++--+-..++|++.+++ .||+.+.++|+ +..+. ..| ..++.+...++..++.++
T Consensus 4 v~~k~il~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~----~~~-----~g~~~~~~~~~~~A~~~~ 74 (284)
T PRK09195 4 VSTKQMLNNAQRGGYAVPAFNIHNLETMQVVVETAAELHSPVIIAGTPGT----FSY-----AGTEYLLAIVSAAAKQYH 74 (284)
T ss_pred CcHHHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcChhH----Hhh-----CCHHHHHHHHHHHHHHCC
Confidence 45555 45567777889999999999986 57888999887 43322 222 335667777888888887
Q ss_pred CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCccccccc-
Q 026125 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTPQAISV- 224 (243)
Q Consensus 153 ~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLtPQ~~~~- 224 (243)
-| |+.-+..+. +.|.. .+.+ ++|.+.|.+.|+..- +..+++.--..||+|=|=||-++-.-.-
T Consensus 75 VP-V~lHLDHg~---~~e~i----~~Ai-~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~ 145 (284)
T PRK09195 75 HP-LALHLDHHE---KFDDI----AQKV-RSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDL 145 (284)
T ss_pred CC-EEEECCCCC---CHHHH----HHHH-HcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCc
Confidence 77 677777742 44443 5666 489999999888422 2344555667899997766666522111
Q ss_pred -ccCccccccCHHhhccc
Q 026125 225 -LGGFRPQGKNVTSAVKV 241 (243)
Q Consensus 225 -~GGykvqGkt~~~A~~l 241 (243)
.++....-.+.|+|+++
T Consensus 146 ~~~~~~~~~T~peea~~F 163 (284)
T PRK09195 146 QVDEADALYTDPAQAREF 163 (284)
T ss_pred ccccccccCCCHHHHHHH
Confidence 01112233567777764
|
|
| >PRK09197 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=84.52 E-value=30 Score=33.44 Aligned_cols=135 Identities=11% Similarity=0.062 Sum_probs=84.5
Q ss_pred HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEE-eCcchhhhhcc---CCCC----ccCCHHHHHHHHHHHHccc
Q 026125 84 LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICL-VGDSAAMVVHG---HDTT----LPITLEEMLVHCRAVARGA 151 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiIL-VGDSlgmv~lG---~~dT----~~vTldeMi~h~~aV~Rga 151 (243)
|++.++++--+-..++|++.+++ .||+...++|| +..+... .+| +++. .-....++...++..++.+
T Consensus 13 L~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPVIlq~s~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~ 91 (350)
T PRK09197 13 FDRAKENGFALPAVNVVGTDSINAVLEGAAEAKSPVIIQFSNGGAA-FIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHY 91 (350)
T ss_pred HHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcChhhHh-hcCCccccccchhhhhhhHHHHHHHHHHHHHHC
Confidence 45567788899999999999986 46888999887 4433322 223 2220 0111222666777788888
Q ss_pred CCCcEEeeCCCCCC--cCCHHHHHHHHHHHHHH---hCCCEEEeCCCCCch-------HHHHHHHHHcCCceeeccCCcc
Q 026125 152 KRPLLVGDLPFGTY--ESSTNQAVDTAVRILKE---GGMDAIKLEGGSPSR-------ITAARGIVEAGIAVMGHVGLTP 219 (243)
Q Consensus 152 ~~~fvVaDmPfgsY--~~s~e~Av~nA~Rl~ke---aGAdaVKLEGg~~~~-------~~~i~~L~~~GIPV~GHiGLtP 219 (243)
+-| |+.-+..+.- -....++++...+.+++ .|.+.|.+.|+..-. ..+++..-..||+|=|=||-++
T Consensus 92 ~VP-ValHLDHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpfEeNI~~TkevVe~Ah~~GvsVEaELG~Ig 170 (350)
T PRK09197 92 GVP-VILHTDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPLEENIEICSKYLERMAKAGMTLEIELGVTG 170 (350)
T ss_pred CCC-EEEECCCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccC
Confidence 777 6778878522 11344555554444432 359999998885332 2344555567999988777776
Q ss_pred c
Q 026125 220 Q 220 (243)
Q Consensus 220 Q 220 (243)
.
T Consensus 171 g 171 (350)
T PRK09197 171 G 171 (350)
T ss_pred C
Confidence 4
|
|
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.39 E-value=12 Score=36.49 Aligned_cols=97 Identities=15% Similarity=0.145 Sum_probs=63.1
Q ss_pred CCCHHHHHHhhh-CCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 78 RVTLTHLRQKHK-NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 78 ~~tv~~Lr~~kk-~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
..|..||....+ -+-|+++=++-+...|+.+.++|+|.|.|+..-|-.. |..+-|++-+....+++. +...|
T Consensus 231 ~ltW~di~~lr~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~----d~~~~t~~~L~~i~~a~~---~~~~v 303 (381)
T PRK11197 231 SISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQL----DGVLSSARALPAIADAVK---GDITI 303 (381)
T ss_pred CCCHHHHHHHHHhCCCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCC----CCcccHHHHHHHHHHHhc---CCCeE
Confidence 467777766432 3569999999999999999999999998875433322 233445544444334442 23337
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
++|=. . .+..+. .+.+ ..||++|-+
T Consensus 304 i~dGG---I-r~g~Di----~KAL-aLGA~~V~i 328 (381)
T PRK11197 304 LADSG---I-RNGLDV----VRMI-ALGADTVLL 328 (381)
T ss_pred EeeCC---c-CcHHHH----HHHH-HcCcCceeE
Confidence 88854 4 355666 3455 479999987
|
|
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=84.36 E-value=5.1 Score=37.00 Aligned_cols=73 Identities=19% Similarity=0.302 Sum_probs=46.9
Q ss_pred HHHHHHHHcCCCEEEeC-cchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVG-DSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 103 ~sA~iae~AGiDiILVG-DSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
..|..++++|+|.|.+. -.. ..||+. +.. +..++.|++..+.|+ ++. |+. .+++++ .++++
T Consensus 151 ~~a~~l~~~G~d~i~vh~r~~---~~~~~~--~~~----~~~i~~i~~~~~ipv-i~n---GgI-~~~~da----~~~l~ 212 (319)
T TIGR00737 151 EAARIAEDAGAQAVTLHGRTR---AQGYSG--EAN----WDIIARVKQAVRIPV-IGN---GDI-FSPEDA----KAMLE 212 (319)
T ss_pred HHHHHHHHhCCCEEEEEcccc---cccCCC--chh----HHHHHHHHHcCCCcE-EEe---CCC-CCHHHH----HHHHH
Confidence 45778899999999653 221 223432 222 455677888888774 443 344 467777 56776
Q ss_pred HhCCCEEEeCCC
Q 026125 182 EGGMDAIKLEGG 193 (243)
Q Consensus 182 eaGAdaVKLEGg 193 (243)
++|||+|.+--+
T Consensus 213 ~~gad~VmigR~ 224 (319)
T TIGR00737 213 TTGCDGVMIGRG 224 (319)
T ss_pred hhCCCEEEEChh
Confidence 789999999433
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=84.29 E-value=16 Score=37.35 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=69.9
Q ss_pred HHHHHHhhhCCCcEEEEec------CCH-------HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHH
Q 026125 81 LTHLRQKHKNGEPITMVTA------YDY-------PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAV 147 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTA------YD~-------~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV 147 (243)
+..|++.. .+.+|.|+.- |.- .+-..+.++|+|++-+.|++.- ++.|....+.+
T Consensus 67 lr~l~~~~-~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd------------~~~~~~ai~~a 133 (593)
T PRK14040 67 LRELKKAM-PNTPQQMLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMND------------PRNLETALKAV 133 (593)
T ss_pred HHHHHHhC-CCCeEEEEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCc------------HHHHHHHHHHH
Confidence 55566653 4577776543 221 2355677889999999997743 35566666666
Q ss_pred HcccCCCc-EE--eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc-CCceeec
Q 026125 148 ARGAKRPL-LV--GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 148 ~Rga~~~f-vV--aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~-GIPV~GH 214 (243)
++.-.... .+ .+-|. | +.+..++.+..+. +.|||.|.|-|-.. .+..++++|.++ ++|+--|
T Consensus 134 k~~G~~~~~~i~yt~~p~--~--~~~~~~~~a~~l~-~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~~pi~~H 204 (593)
T PRK14040 134 RKVGAHAQGTLSYTTSPV--H--TLQTWVDLAKQLE-DMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVDVPLHLH 204 (593)
T ss_pred HHcCCeEEEEEEEeeCCc--c--CHHHHHHHHHHHH-HcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcCCeEEEE
Confidence 64222210 12 23332 2 5666666666555 79999999998732 344566777654 5776666
|
|
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=84.04 E-value=20 Score=32.01 Aligned_cols=79 Identities=19% Similarity=0.138 Sum_probs=44.6
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG 184 (243)
+..+-+.|.|-|=+-=.++...-| .++++....++|++.+....+-+=++. +| .+.++ +..|.|+..++|
T Consensus 76 ~~~Av~~GAdEiDvv~n~g~l~~g-------~~~~v~~ei~~i~~~~~g~~lKvIlE~-~~-L~~~e-i~~a~~ia~eaG 145 (211)
T TIGR00126 76 TKEAIKYGADEVDMVINIGALKDG-------NEEVVYDDIRAVVEACAGVLLKVIIET-GL-LTDEE-IRKACEICIDAG 145 (211)
T ss_pred HHHHHHcCCCEEEeecchHhhhCC-------cHHHHHHHHHHHHHHcCCCeEEEEEec-CC-CCHHH-HHHHHHHHHHhC
Confidence 344456788866322122221111 345566666677765542222233444 44 35555 447778888999
Q ss_pred CCEEEeCCC
Q 026125 185 MDAIKLEGG 193 (243)
Q Consensus 185 AdaVKLEGg 193 (243)
||-||..-|
T Consensus 146 ADfvKTsTG 154 (211)
T TIGR00126 146 ADFVKTSTG 154 (211)
T ss_pred CCEEEeCCC
Confidence 999999855
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >TIGR00874 talAB transaldolase | Back alignment and domain information |
|---|
Probab=84.04 E-value=30 Score=32.89 Aligned_cols=112 Identities=13% Similarity=0.228 Sum_probs=74.0
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEE--EeC---cchhhhhcc---CC---CCccCCHHHHHHHHHHHHc
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC--LVG---DSAAMVVHG---HD---TTLPITLEEMLVHCRAVAR 149 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiI--LVG---DSlgmv~lG---~~---dT~~vTldeMi~h~~aV~R 149 (243)
+.-.+.+.+.|-++-+-..|+...|.+|.+||++.| .|| |+.-.. .| |+ +.+-..+.++. +..++
T Consensus 138 i~A~~~L~~~GI~vN~TliFS~~Qa~aaa~AGa~~ISPFVgRi~dw~~~~-~g~~~~~~~~d~Gv~~v~~i~---~~~k~ 213 (317)
T TIGR00874 138 IRAAEELEKEGIHCNLTLLFSFVQAIACAEAKVTLISPFVGRILDWYKAA-TGKKEYSIEEDPGVASVKKIY---NYYKK 213 (317)
T ss_pred HHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEeecchHhHhhhhc-cCccccccccCchHHHHHHHH---HHHHH
Confidence 556677888999999999999999999999999999 588 321110 12 11 22222233332 22333
Q ss_pred -ccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeecc
Q 026125 150 -GAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHV 215 (243)
Q Consensus 150 -ga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHi 215 (243)
+.+.- |++- || .|.++..+ -+|||.+-+- +.+.+.|.+.+-||.-++
T Consensus 214 ~g~~T~-Im~A----Sf-Rn~~qv~~-------laG~d~~Ti~------p~ll~~L~~~~~~~~~~l 261 (317)
T TIGR00874 214 HGYPTE-VMGA----SF-RNKEEILA-------LAGCDRLTIS------PALLDELKESTGPVERKL 261 (317)
T ss_pred cCCCcE-EEee----cc-CCHHHHHH-------HHCCCeEeCC------HHHHHHHHhCCCCcCccC
Confidence 44433 3322 67 48888853 3699999774 566789999999998776
|
This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis. |
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=83.89 E-value=11 Score=34.90 Aligned_cols=94 Identities=19% Similarity=0.163 Sum_probs=61.6
Q ss_pred HHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 026125 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (243)
Q Consensus 108 ae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAd 186 (243)
.-++|+|-|++..|.|=. ..+|.||-..-++.++..++ +..|++... ..+.+++++.|... ++.|||
T Consensus 38 li~~Gv~Gi~v~GstGE~-------~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~----~~~t~~ai~~a~~A-~~~Gad 105 (309)
T cd00952 38 LIAAGVDGILTMGTFGEC-------ATLTWEEKQAFVATVVETVAGRVPVFVGAT----TLNTRDTIARTRAL-LDLGAD 105 (309)
T ss_pred HHHcCCCEEEECcccccc-------hhCCHHHHHHHHHHHHHHhCCCCCEEEEec----cCCHHHHHHHHHHH-HHhCCC
Confidence 335799999887666542 35799998877777665444 344565542 23678999988654 479999
Q ss_pred EEEeCCC------CCchHHHHHHHHHc--CCceee
Q 026125 187 AIKLEGG------SPSRITAARGIVEA--GIAVMG 213 (243)
Q Consensus 187 aVKLEGg------~~~~~~~i~~L~~~--GIPV~G 213 (243)
+|-+--- .+......+.+.++ ++||+=
T Consensus 106 ~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~i 140 (309)
T cd00952 106 GTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAI 140 (309)
T ss_pred EEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEE
Confidence 9987633 12233445667775 488873
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >PRK13753 dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=83.84 E-value=17 Score=34.02 Aligned_cols=92 Identities=17% Similarity=0.220 Sum_probs=56.3
Q ss_pred HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC--CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 026125 107 HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK--RPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (243)
Q Consensus 107 iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~--~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG 184 (243)
..-+.|.|+|=+|.-. ..|+..+|+.+|=+..+.-|.+... ...|..| +|. ++.+ ...+ ++|
T Consensus 33 ~m~~~GAdIIDIGgeS-----TrPga~~vs~eeE~~Rv~pvI~~l~~~~~~ISID----T~~--~~va----~~al-~aG 96 (279)
T PRK13753 33 EMLRVGSDVVDVGPAA-----SHPDARPVSPADEIRRIAPLLDALSDQMHRVSID----SFQ--PETQ----RYAL-KRG 96 (279)
T ss_pred HHHHCCCcEEEECCCC-----CCCCCCcCCHHHHHHHHHHHHHHHHhCCCcEEEE----CCC--HHHH----HHHH-HcC
Confidence 3457799999888422 2456678888886653333333221 2346688 563 4444 3345 479
Q ss_pred CCEEEeCCCCCchHHHHHHHHHcCCceee-cc
Q 026125 185 MDAIKLEGGSPSRITAARGIVEAGIAVMG-HV 215 (243)
Q Consensus 185 AdaVKLEGg~~~~~~~i~~L~~~GIPV~G-Hi 215 (243)
||.|+==.|.. .+...+.+.+.|.|||= |.
T Consensus 97 adiINDVsg~~-d~~~~~vva~~~~~vVlmH~ 127 (279)
T PRK13753 97 VGYLNDIQGFP-DPALYPDIAEADCRLVVMHS 127 (279)
T ss_pred CCEEEeCCCCC-chHHHHHHHHcCCCEEEEec
Confidence 99998544433 35555667788888764 64
|
|
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=83.77 E-value=13 Score=33.19 Aligned_cols=94 Identities=19% Similarity=0.268 Sum_probs=60.7
Q ss_pred CCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEe
Q 026125 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (243)
Q Consensus 79 ~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVa 158 (243)
..+.+.++.. ..+.|.-++++|...|.-+++.|.|-|.+|-=..... .++..+..++- .+.+++..+.|++..
T Consensus 92 ~~~~~ar~~~-~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~t--K~~~~~~G~~~----l~~~~~~~~iP~vAI 164 (211)
T COG0352 92 MPLAEARELL-GPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTST--KPDAPPLGLEG----LREIRELVNIPVVAI 164 (211)
T ss_pred cchHHHHHhc-CCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCC--CCCCCccCHHH----HHHHHHhCCCCEEEE
Confidence 4466677764 6677999999999999999999999999993222211 12223444443 334666666774442
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
|+- |++++ .+++ ++||++|=.
T Consensus 165 ----GGi--~~~nv----~~v~-~~Ga~gVAv 185 (211)
T COG0352 165 ----GGI--NLENV----PEVL-EAGADGVAV 185 (211)
T ss_pred ----cCC--CHHHH----HHHH-HhCCCeEEe
Confidence 233 55555 5566 699998865
|
|
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=83.63 E-value=15 Score=35.26 Aligned_cols=94 Identities=22% Similarity=0.258 Sum_probs=61.1
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEe-CcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEe
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILV-GDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVa 158 (243)
|+..-+.+.++|=....+++-|...|+.++++|+-++.- |.-+| .-.| ++-.+.+ +.+++..+.| |++
T Consensus 186 ~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl~~pIG-sg~g------v~~p~~i---~~~~e~~~vp-Viv 254 (326)
T PRK11840 186 TLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPLGAPIG-SGLG------IQNPYTI---RLIVEGATVP-VLV 254 (326)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEeecccccc-CCCC------CCCHHHH---HHHHHcCCCc-EEE
Confidence 555556665555444477889999999999999966654 54444 2233 3323333 4454555555 778
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
|=.- .+++++ .+.| |.|||+|-+--+
T Consensus 255 dAGI----g~~sda----~~Am-elGadgVL~nSa 280 (326)
T PRK11840 255 DAGV----GTASDA----AVAM-ELGCDGVLMNTA 280 (326)
T ss_pred eCCC----CCHHHH----HHHH-HcCCCEEEEcce
Confidence 8544 367777 5567 699999988655
|
|
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=83.55 E-value=2.6 Score=40.66 Aligned_cols=96 Identities=13% Similarity=0.185 Sum_probs=59.2
Q ss_pred CCHHHHHHHHH--cCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHH
Q 026125 100 YDYPSAVHLDS--AGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAV 177 (243)
Q Consensus 100 YD~~sA~iae~--AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~ 177 (243)
-|+..+...-+ +|+|.|.+- +.+||.. -++...+.|++..|+.+||+. .- .++|.+ .
T Consensus 108 ~d~er~~~L~~~~~g~D~iviD-----~AhGhs~-------~~i~~ik~ik~~~P~~~vIaG----NV-~T~e~a----~ 166 (346)
T PRK05096 108 ADFEKTKQILALSPALNFICID-----VANGYSE-------HFVQFVAKAREAWPDKTICAG----NV-VTGEMV----E 166 (346)
T ss_pred HHHHHHHHHHhcCCCCCEEEEE-----CCCCcHH-------HHHHHHHHHHHhCCCCcEEEe----cc-cCHHHH----H
Confidence 34444444444 799999874 2355543 456667788888888888753 44 566766 4
Q ss_pred HHHHHhCCCEEEeCCCCCc-----------------hHHHHHHHHHcCCceeeccCC
Q 026125 178 RILKEGGMDAIKLEGGSPS-----------------RITAARGIVEAGIAVMGHVGL 217 (243)
Q Consensus 178 Rl~keaGAdaVKLEGg~~~-----------------~~~~i~~L~~~GIPV~GHiGL 217 (243)
.|+ ++|||+||+==|... +.+..++..+.|+||++-=|.
T Consensus 167 ~Li-~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi 222 (346)
T PRK05096 167 ELI-LSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGC 222 (346)
T ss_pred HHH-HcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCCc
Confidence 566 699999996433211 112234445668888876554
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=83.52 E-value=2.4 Score=37.68 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=34.1
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
.|+.+.++|.|.|+||.|. .+|.+.|..-++++++.++.|.++
T Consensus 16 ia~~v~~~gtDaI~VGGS~-----------gvt~~~~~~~v~~ik~~~~lPvil 58 (205)
T TIGR01769 16 IAKNAKDAGTDAIMVGGSL-----------GIVESNLDQTVKKIKKITNLPVIL 58 (205)
T ss_pred HHHHHHhcCCCEEEEcCcC-----------CCCHHHHHHHHHHHHhhcCCCEEE
Confidence 4567889999999999664 458888888889999877777543
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=83.48 E-value=34 Score=32.00 Aligned_cols=124 Identities=15% Similarity=0.170 Sum_probs=84.6
Q ss_pred CCHHH-HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEEe-CcchhhhhccCCCCccCCHHHHHHHHHHHHcccC
Q 026125 79 VTLTH-LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK 152 (243)
Q Consensus 79 ~tv~~-Lr~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiILV-GDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~ 152 (243)
+|..+ |++.++++--+-..++||+.+++ .||+.+.++||- ..+. . ....++.+...++..++.++
T Consensus 4 v~~k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~-~--------~~~~~~~~~~~~~~~a~~~~ 74 (286)
T PRK12738 4 ISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGT-F--------KHIALEEIYALCSAYSTTYN 74 (286)
T ss_pred CcHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcch-h--------hhCCHHHHHHHHHHHHHHCC
Confidence 34444 45567788899999999999986 468889999973 2211 1 12446667777788888887
Q ss_pred CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCccc
Q 026125 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTPQ 220 (243)
Q Consensus 153 ~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLtPQ 220 (243)
-| |..-|..+. +.+.+ .+.+ ++|...|.+.|+..- +..+++..-..||+|=|=||-++.
T Consensus 75 VP-ValHLDHg~---~~e~i----~~ai-~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg 140 (286)
T PRK12738 75 MP-LALHLDHHE---SLDDI----RRKV-HAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGG 140 (286)
T ss_pred CC-EEEECCCCC---CHHHH----HHHH-HcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCC
Confidence 77 677887732 44544 4556 489999999888432 234455555679999776666653
|
|
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=83.30 E-value=7 Score=35.53 Aligned_cols=69 Identities=16% Similarity=0.159 Sum_probs=51.0
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG 184 (243)
++.+.++|+|.|.+.|++|. .+-+++-...+++++..+.. .+.| -++.+.--++.|+...+ ++|
T Consensus 157 ~~~~~~~g~~~i~l~DT~G~----------~~P~~v~~lv~~l~~~~~~~----~l~~-H~Hnd~Gla~An~laA~-~aG 220 (273)
T cd07941 157 LKAAAEAGADWLVLCDTNGG----------TLPHEIAEIVKEVRERLPGV----PLGI-HAHNDSGLAVANSLAAV-EAG 220 (273)
T ss_pred HHHHHhCCCCEEEEecCCCC----------CCHHHHHHHHHHHHHhCCCC----eeEE-EecCCCCcHHHHHHHHH-HcC
Confidence 34557889999999999874 46677777778888876631 1233 23467788999999999 489
Q ss_pred CCEEE
Q 026125 185 MDAIK 189 (243)
Q Consensus 185 AdaVK 189 (243)
|+-|-
T Consensus 221 a~~id 225 (273)
T cd07941 221 ATQVQ 225 (273)
T ss_pred CCEEE
Confidence 99876
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=83.22 E-value=20 Score=32.78 Aligned_cols=115 Identities=22% Similarity=0.171 Sum_probs=68.9
Q ss_pred CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhh----hhccCCCCccCCHHHHHHHHHHHHcccC-CCc-E------Ee
Q 026125 91 GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAM----VVHGHDTTLPITLEEMLVHCRAVARGAK-RPL-L------VG 158 (243)
Q Consensus 91 g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgm----v~lG~~dT~~vTldeMi~h~~aV~Rga~-~~f-v------Va 158 (243)
+-+++.+. -..--...+-++|+|.|-+.++++- ..++ .+.++.+..+....+.++ .-+ + ..
T Consensus 66 ~~~~~~~~-~~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~------~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f 138 (274)
T cd07938 66 GVRYSALV-PNLRGAERALAAGVDEVAVFVSASETFSQKNIN------CSIAESLERFEPVAELAKAAGLRVRGYVSTAF 138 (274)
T ss_pred CCEEEEEC-CCHHHHHHHHHcCcCEEEEEEecCHHHHHHHcC------CCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEe
Confidence 45566664 3555577788899998866655542 2222 344554444333222221 111 2 25
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc--CCceeec
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA--GIAVMGH 214 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~--GIPV~GH 214 (243)
+-||.+. .+++..++.+.++. +.||+.|.|.|... ....+++.|.+. ++|+-=|
T Consensus 139 ~~~~~~~-~~~~~~~~~~~~~~-~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H 199 (274)
T cd07938 139 GCPYEGE-VPPERVAEVAERLL-DLGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALH 199 (274)
T ss_pred cCCCCCC-CCHHHHHHHHHHHH-HcCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 6677666 57888887777766 69999999998733 344566777665 3665555
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=83.12 E-value=6.8 Score=35.44 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=52.8
Q ss_pred hhhCCCcEEEE-ec-CC----HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 87 KHKNGEPITMV-TA-YD----YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 87 ~kk~g~~Itml-TA-YD----~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
.++.+.|+++= .. ++ ...|+.++++|+|.|-| | .+|+....+. +...+.|++..+..+||+.
T Consensus 130 v~~~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~V-d------~~~~g~~~a~----~~~I~~i~~~~~~ipIIgN- 197 (231)
T TIGR00736 130 MKELNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHV-D------AMYPGKPYAD----MDLLKILSEEFNDKIIIGN- 197 (231)
T ss_pred HHcCCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEE-e------eCCCCCchhh----HHHHHHHHHhcCCCcEEEE-
Confidence 33345676653 33 32 27889999999999977 3 1343322233 3445667777653346765
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
|+- .|.+++ .++++ .|||+|.+-
T Consensus 198 --GgI-~s~eda----~e~l~-~GAd~Vmvg 220 (231)
T TIGR00736 198 --NSI-DDIESA----KEMLK-AGADFVSVA 220 (231)
T ss_pred --CCc-CCHHHH----HHHHH-hCCCeEEEc
Confidence 344 477888 56774 899999884
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=83.10 E-value=19 Score=31.00 Aligned_cols=96 Identities=17% Similarity=0.162 Sum_probs=60.2
Q ss_pred cCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHH
Q 026125 99 AYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVR 178 (243)
Q Consensus 99 AYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~R 178 (243)
.-|...|..+.++|. +|+=++..++.++.....+.+++-.+.++ .+.+-+...+...++- .+
T Consensus 13 ~~~~~~~~~~~~~G~-------------ig~i~~~~~~~~~~~~~~~~i~~~~~~~~-~v~~i~~~~~~~~~~~----~~ 74 (236)
T cd04730 13 VSTPELAAAVSNAGG-------------LGFIGAGYLTPEALRAEIRKIRALTDKPF-GVNLLVPSSNPDFEAL----LE 74 (236)
T ss_pred CCCHHHHHHHHhCCC-------------ccccCCCCCCHHHHHHHHHHHHHhcCCCe-EEeEecCCCCcCHHHH----HH
Confidence 358888888888872 12224556688888888888876443342 2333222110123333 34
Q ss_pred HHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeec
Q 026125 179 ILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGH 214 (243)
Q Consensus 179 l~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GH 214 (243)
.+++.|+|+|.+-++. ...+++.+.+.++++..-
T Consensus 75 ~~~~~g~d~v~l~~~~--~~~~~~~~~~~~i~~i~~ 108 (236)
T cd04730 75 VALEEGVPVVSFSFGP--PAEVVERLKAAGIKVIPT 108 (236)
T ss_pred HHHhCCCCEEEEcCCC--CHHHHHHHHHcCCEEEEe
Confidence 4557899999997773 356678888889998653
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=83.02 E-value=30 Score=31.49 Aligned_cols=111 Identities=13% Similarity=0.165 Sum_probs=65.8
Q ss_pred HHHHHHHHHcCCCEEEeCcchhhhhccCCC---------------CccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCc
Q 026125 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDT---------------TLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYE 166 (243)
Q Consensus 102 ~~sA~iae~AGiDiILVGDSlgmv~lG~~d---------------T~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~ 166 (243)
...++.++++|+.++.+|--.----.|+|. .....+|+.+.+.+...+..+.| +++.+ + ++
T Consensus 26 ~~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~p-~i~si-~-g~- 101 (301)
T PRK07259 26 GEYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEELPWLEEFDTP-IIANV-A-GS- 101 (301)
T ss_pred HHHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHHHHHHhccCCc-EEEEe-c-cC-
Confidence 345555677888888777321112233332 11234566666555544444555 56665 1 23
Q ss_pred CCHHHHHHHHHHHHHHhC-CCEEEe-------CC-CC------CchHHHHHHHHHc-CCceeeccCCc
Q 026125 167 SSTNQAVDTAVRILKEGG-MDAIKL-------EG-GS------PSRITAARGIVEA-GIAVMGHVGLT 218 (243)
Q Consensus 167 ~s~e~Av~nA~Rl~keaG-AdaVKL-------EG-g~------~~~~~~i~~L~~~-GIPV~GHiGLt 218 (243)
++++-.+.|.++ +++| +|+|-| ++ |. +...++++++.++ .+||.-.++.+
T Consensus 102 -~~~~~~~~a~~~-~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~ 167 (301)
T PRK07259 102 -TEEEYAEVAEKL-SKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPN 167 (301)
T ss_pred -CHHHHHHHHHHH-hccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 678887777765 5688 999977 44 31 2245667777776 79999888754
|
|
| >PRK05269 transaldolase B; Provisional | Back alignment and domain information |
|---|
Probab=82.71 E-value=34 Score=32.46 Aligned_cols=116 Identities=12% Similarity=0.144 Sum_probs=73.0
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEE--EeCcchhhhh------ccCCCCccCCHHHHHHHHHHHHc-cc
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC--LVGDSAAMVV------HGHDTTLPITLEEMLVHCRAVAR-GA 151 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiI--LVGDSlgmv~------lG~~dT~~vTldeMi~h~~aV~R-ga 151 (243)
+.-.+.+.++|-++-+-.+|+...|.++.+||++.| .|| -+--.. .+++......+.-+....+..++ +.
T Consensus 140 i~A~~~L~~~GI~vn~TlvFs~~Qa~~aa~AGa~~ISPfVg-Ri~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~ 218 (318)
T PRK05269 140 IRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPFVG-RILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGY 218 (318)
T ss_pred HHHHHHHHHcCCceeEeEecCHHHHHHHHHcCCCEEEeecc-HHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCC
Confidence 556677888999999999999999999999999998 477 221110 11211111222222222222322 45
Q ss_pred CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccC
Q 026125 152 KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVG 216 (243)
Q Consensus 152 ~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiG 216 (243)
+..++.+ || .|+++..+ -+|+|.+-+- +.+.+.|.+.+-||--++.
T Consensus 219 ~t~im~A-----Sf-rn~~~v~~-------laG~d~vTi~------p~ll~~l~~~~~~~~~~l~ 264 (318)
T PRK05269 219 KTVVMGA-----SF-RNTGQILE-------LAGCDRLTIS------PALLEELAASEGELERKLS 264 (318)
T ss_pred CceEEee-----cc-CCHHHHHH-------HhCCCeEECC------HHHHHHHHhcCCCccccCC
Confidence 5553333 78 48888753 3699999664 5667889988888865553
|
|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=82.45 E-value=13 Score=33.19 Aligned_cols=101 Identities=23% Similarity=0.324 Sum_probs=54.6
Q ss_pred HHHHHHcCCCEEEeC----cchhh--hhc--c-CCCCccCCHHHHHHHHHHHHcccCCCcEE-ee-CCCCCCcCCHHHHH
Q 026125 105 AVHLDSAGIDICLVG----DSAAM--VVH--G-HDTTLPITLEEMLVHCRAVARGAKRPLLV-GD-LPFGTYESSTNQAV 173 (243)
Q Consensus 105 A~iae~AGiDiILVG----DSlgm--v~l--G-~~dT~~vTldeMi~h~~aV~Rga~~~fvV-aD-mPfgsY~~s~e~Av 173 (243)
++..+++|+|+|=+| |.++= ++. . ..=-..++++.....++.|++-.+.|+++ +- =|+-+| ..++-
T Consensus 20 ~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~--G~~~f- 96 (242)
T cd04724 20 LKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQY--GLERF- 96 (242)
T ss_pred HHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHh--CHHHH-
Confidence 556777888888776 22110 000 0 00012244567777888888766666322 11 111112 12444
Q ss_pred HHHHHHHHHhCCCEEEeCCC-CCchHHHHHHHHHcCCce
Q 026125 174 DTAVRILKEGGMDAIKLEGG-SPSRITAARGIVEAGIAV 211 (243)
Q Consensus 174 ~nA~Rl~keaGAdaVKLEGg-~~~~~~~i~~L~~~GIPV 211 (243)
.+.++++|+++|-+-|= .++...+++.+.+.|+..
T Consensus 97 ---i~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~ 132 (242)
T cd04724 97 ---LRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDL 132 (242)
T ss_pred ---HHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcE
Confidence 45566899999988442 223446677788888744
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=82.38 E-value=32 Score=30.96 Aligned_cols=90 Identities=20% Similarity=0.193 Sum_probs=53.7
Q ss_pred HHHHHHHHcCCCEEEeCc-chhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGD-SAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGD-Slgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
..+..+++.|++.+++-| +--....|+ | +...+.+++..+.|++. - |+. .|.++. .++++
T Consensus 156 e~~~~~~~~g~~~ii~~~i~~~G~~~G~-d---------~~~i~~~~~~~~ipvIa-s---GGv-~s~eD~----~~l~~ 216 (258)
T PRK01033 156 ELAKEYEALGAGEILLNSIDRDGTMKGY-D---------LELLKSFRNALKIPLIA-L---GGA-GSLDDI----VEAIL 216 (258)
T ss_pred HHHHHHHHcCCCEEEEEccCCCCCcCCC-C---------HHHHHHHHhhCCCCEEE-e---CCC-CCHHHH----HHHHH
Confidence 456778899999776543 322334553 2 33445677777778544 3 345 477777 45665
Q ss_pred HhCCCEEEeCCCCC------------chHHHHHHHHHcCCce
Q 026125 182 EGGMDAIKLEGGSP------------SRITAARGIVEAGIAV 211 (243)
Q Consensus 182 eaGAdaVKLEGg~~------------~~~~~i~~L~~~GIPV 211 (243)
+.|+++|-+--.-. ....+-..|.+.||||
T Consensus 217 ~~GvdgVivg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (258)
T PRK01033 217 NLGADAAAAGSLFVFKGVYKAVLINYPNGDEKEELLKAGIPV 258 (258)
T ss_pred HCCCCEEEEcceeeeCcccccccccccHHHHHHHHHHcCCCC
Confidence 68999886522211 1234456677788775
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=82.35 E-value=3.3 Score=39.08 Aligned_cols=72 Identities=22% Similarity=0.266 Sum_probs=54.5
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ke 182 (243)
..|+.++++|+|.|.+-||.|. .+-+++-...+++++..+.. ..+.|-+. .|.--++.|+...+ +
T Consensus 147 ~~a~~~~~~Ga~~i~i~DT~G~----------~~P~~v~~~v~~l~~~l~~~---i~ig~H~H-nnlGla~ANslaAi-~ 211 (333)
T TIGR03217 147 EQAKLMESYGADCVYIVDSAGA----------MLPDDVRDRVRALKAVLKPE---TQVGFHAH-HNLSLAVANSIAAI-E 211 (333)
T ss_pred HHHHHHHhcCCCEEEEccCCCC----------CCHHHHHHHHHHHHHhCCCC---ceEEEEeC-CCCchHHHHHHHHH-H
Confidence 3456778899999999999865 67788888888998877521 12345344 68888999999999 5
Q ss_pred hCCCEEE
Q 026125 183 GGMDAIK 189 (243)
Q Consensus 183 aGAdaVK 189 (243)
+||+-|-
T Consensus 212 aGa~~iD 218 (333)
T TIGR03217 212 AGATRID 218 (333)
T ss_pred hCCCEEE
Confidence 8999754
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=82.34 E-value=2.1 Score=37.22 Aligned_cols=71 Identities=30% Similarity=0.345 Sum_probs=47.2
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHh
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~kea 183 (243)
.++.+.++|+|.|.+-|++|. .+-+++-+..+.+++..+.. .+.|-. +.+.--|+.|+...+ ++
T Consensus 142 ~~~~~~~~g~~~i~l~Dt~G~----------~~P~~v~~lv~~~~~~~~~~----~l~~H~-Hnd~Gla~An~laA~-~a 205 (237)
T PF00682_consen 142 LAEALAEAGADIIYLADTVGI----------MTPEDVAELVRALREALPDI----PLGFHA-HNDLGLAVANALAAL-EA 205 (237)
T ss_dssp HHHHHHHHT-SEEEEEETTS-----------S-HHHHHHHHHHHHHHSTTS----EEEEEE-BBTTS-HHHHHHHHH-HT
T ss_pred HHHHHHHcCCeEEEeeCccCC----------cCHHHHHHHHHHHHHhccCC----eEEEEe-cCCccchhHHHHHHH-Hc
Confidence 466777889999999988866 45667777778888887752 223322 356667888888888 48
Q ss_pred CCCEEEe
Q 026125 184 GMDAIKL 190 (243)
Q Consensus 184 GAdaVKL 190 (243)
||+-|-.
T Consensus 206 Ga~~id~ 212 (237)
T PF00682_consen 206 GADRIDG 212 (237)
T ss_dssp T-SEEEE
T ss_pred CCCEEEc
Confidence 9998744
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >PRK07695 transcriptional regulator TenI; Provisional | Back alignment and domain information |
|---|
Probab=82.32 E-value=26 Score=29.99 Aligned_cols=95 Identities=18% Similarity=0.253 Sum_probs=56.8
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
.+.++++.. +..++.+++++...+..++++|+|.|..|--..... .+...+..++. .+.+++..+.|++..
T Consensus 85 ~~~~~r~~~--~~~~ig~s~~s~e~a~~a~~~Gadyi~~g~v~~t~~--k~~~~~~g~~~----l~~~~~~~~ipvia~- 155 (201)
T PRK07695 85 SVRSVREKF--PYLHVGYSVHSLEEAIQAEKNGADYVVYGHVFPTDC--KKGVPARGLEE----LSDIARALSIPVIAI- 155 (201)
T ss_pred CHHHHHHhC--CCCEEEEeCCCHHHHHHHHHcCCCEEEECCCCCCCC--CCCCCCCCHHH----HHHHHHhCCCCEEEE-
Confidence 455666643 345677799999999999999999997663111110 11112233332 345555566775543
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
|+- +++++ ..++ +.|+++|-+-++
T Consensus 156 ---GGI--~~~~~----~~~~-~~Ga~gvav~s~ 179 (201)
T PRK07695 156 ---GGI--TPENT----RDVL-AAGVSGIAVMSG 179 (201)
T ss_pred ---cCC--CHHHH----HHHH-HcCCCEEEEEHH
Confidence 344 55554 5566 489999976443
|
|
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=82.30 E-value=12 Score=35.79 Aligned_cols=94 Identities=21% Similarity=0.195 Sum_probs=52.7
Q ss_pred HHHHHHHHcCCCEEEe-CcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 103 ~sA~iae~AGiDiILV-GDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
..|+.++++|+|.|-| +.+.......++.. ...-......++.|++..+.|+++. |.+ .+++++ -+.++
T Consensus 256 ~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~-~~~~~~~~~~~~~ik~~~~~pvi~~----G~i-~~~~~~----~~~l~ 325 (382)
T cd02931 256 KAAKILEEAGYDALDVDAGSYDAWYWNHPPM-YQKKGMYLPYCKALKEVVDVPVIMA----GRM-EDPELA----SEAIN 325 (382)
T ss_pred HHHHHHHHhCCCEEEeCCCCCcccccccCCc-cCCcchhHHHHHHHHHHCCCCEEEe----CCC-CCHHHH----HHHHH
Confidence 3567888999999954 32221111111211 0010112456677888887775542 244 366666 66787
Q ss_pred HhCCCEEEeCCCCCchHHHHHHHHH
Q 026125 182 EGGMDAIKLEGGSPSRITAARGIVE 206 (243)
Q Consensus 182 eaGAdaVKLEGg~~~~~~~i~~L~~ 206 (243)
+++||.|-+--+.-..+++++.+.+
T Consensus 326 ~g~~D~V~~gR~~ladP~l~~k~~~ 350 (382)
T cd02931 326 EGIADMISLGRPLLADPDVVNKIRR 350 (382)
T ss_pred cCCCCeeeechHhHhCccHHHHHHc
Confidence 7889999885543333455565544
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E | Back alignment and domain information |
|---|
Probab=82.28 E-value=50 Score=32.11 Aligned_cols=136 Identities=9% Similarity=0.075 Sum_probs=83.9
Q ss_pred HHhhhCCCcEEEEecCCHHHHHH----HHHcCCCEEE-eCcchhhhhcc--CCC----C-ccCCHHHHHHHHHHHHcccC
Q 026125 85 RQKHKNGEPITMVTAYDYPSAVH----LDSAGIDICL-VGDSAAMVVHG--HDT----T-LPITLEEMLVHCRAVARGAK 152 (243)
Q Consensus 85 r~~kk~g~~ItmlTAYD~~sA~i----ae~AGiDiIL-VGDSlgmv~lG--~~d----T-~~vTldeMi~h~~aV~Rga~ 152 (243)
+..++++--+-..++|+..+++. ||+...++|| +.......+-| +++ . .-+....+...++.+++-++
T Consensus 20 ~~A~~~~yAVgAfNv~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a~ 99 (357)
T TIGR01520 20 QYAKENNFAIPAINCTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHYG 99 (357)
T ss_pred HHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHCC
Confidence 34567888899999999999874 6888999887 43322111122 333 1 12334446677777877777
Q ss_pred CCcEEeeCCCC-CCc-CCHHHHHHHHHHHHHHhC---CCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCccc
Q 026125 153 RPLLVGDLPFG-TYE-SSTNQAVDTAVRILKEGG---MDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTPQ 220 (243)
Q Consensus 153 ~~fvVaDmPfg-sY~-~s~e~Av~nA~Rl~keaG---AdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLtPQ 220 (243)
-| |+.-|..+ +|+ .-.+++++.....+.++| ...|.+.|+..- +..+++..-..||.|=|=||-++.
T Consensus 100 VP-ValHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~lpfeENI~~TrevVe~Ah~~GvsVEaELG~vgG 178 (357)
T TIGR01520 100 VP-VVLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSEEPIEENIEICVKYLKRMAKIKMWLEIEIGITGG 178 (357)
T ss_pred CC-EEEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCC
Confidence 67 77888885 331 013444444333333455 999999888432 223344455569999888887764
Q ss_pred c
Q 026125 221 A 221 (243)
Q Consensus 221 ~ 221 (243)
.
T Consensus 179 ~ 179 (357)
T TIGR01520 179 E 179 (357)
T ss_pred c
Confidence 3
|
coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree. |
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=82.16 E-value=24 Score=32.12 Aligned_cols=115 Identities=10% Similarity=0.018 Sum_probs=65.1
Q ss_pred CcEEEEecCCHHHHHHHHHcCCCEEEeCcchh----hhhccCCCCccCCHHHHHHHHHHHHccc-CC-CcEEeeCCCCCC
Q 026125 92 EPITMVTAYDYPSAVHLDSAGIDICLVGDSAA----MVVHGHDTTLPITLEEMLVHCRAVARGA-KR-PLLVGDLPFGTY 165 (243)
Q Consensus 92 ~~ItmlTAYD~~sA~iae~AGiDiILVGDSlg----mv~lG~~dT~~vTldeMi~h~~aV~Rga-~~-~fvVaDmPfgsY 165 (243)
..+......+..-...+.++|+|.|-+-.+++ -..+| -+.+|.+..++.+.+-+ .. -.+...+.- ++
T Consensus 64 ~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~------~~~~e~~~~~~~~i~~a~~~G~~v~~~~ed-a~ 136 (262)
T cd07948 64 AKILTHIRCHMDDARIAVETGVDGVDLVFGTSPFLREASHG------KSITEIIESAVEVIEFVKSKGIEVRFSSED-SF 136 (262)
T ss_pred CcEEEEecCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhC------CCHHHHHHHHHHHHHHHHHCCCeEEEEEEe-eC
Confidence 44555556677778888999999885433332 12222 45666554443322221 11 123344443 45
Q ss_pred cCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc-CCceeec
Q 026125 166 ESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 166 ~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~-GIPV~GH 214 (243)
..+++..++.+.++. +.|++.|.|-|... .+..+++.|.+. ++|+--|
T Consensus 137 r~~~~~l~~~~~~~~-~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~~~i~~H 190 (262)
T cd07948 137 RSDLVDLLRVYRAVD-KLGVNRVGIADTVGIATPRQVYELVRTLRGVVSCDIEFH 190 (262)
T ss_pred CCCHHHHHHHHHHHH-HcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 456677666655554 78999999998732 234455655553 4665544
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=82.10 E-value=37 Score=30.72 Aligned_cols=75 Identities=19% Similarity=0.292 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCC--------------CCCchHHHH
Q 026125 136 TLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG--------------GSPSRITAA 201 (243)
Q Consensus 136 TldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEG--------------g~~~~~~~i 201 (243)
.+++.+.+.+..++-.+.| +++.+ + ..++++..+.|.++ +++|+|+|-|-- ..+....++
T Consensus 73 g~~~~~~~~~~~~~~~~~p-~ivsi-~---g~~~~~~~~~a~~~-~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv 146 (296)
T cd04740 73 GVEAFLEELLPWLREFGTP-VIASI-A---GSTVEEFVEVAEKL-ADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIV 146 (296)
T ss_pred CHHHHHHHHHHHhhcCCCc-EEEEE-e---cCCHHHHHHHHHHH-HHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHH
Confidence 4577777666655544455 55555 1 13567776666555 578999997721 112244567
Q ss_pred HHHHHc-CCceeeccC
Q 026125 202 RGIVEA-GIAVMGHVG 216 (243)
Q Consensus 202 ~~L~~~-GIPV~GHiG 216 (243)
+++.++ ++||.--++
T Consensus 147 ~~vr~~~~~Pv~vKl~ 162 (296)
T cd04740 147 KAVKKATDVPVIVKLT 162 (296)
T ss_pred HHHHhccCCCEEEEeC
Confidence 888877 899986654
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK06498 isocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=82.06 E-value=2.2 Score=43.07 Aligned_cols=112 Identities=18% Similarity=0.196 Sum_probs=67.5
Q ss_pred CHHHHHHhhhC-----CCcEEEEecCCHHHHHHHHHc---CC-----CEE-EeCcchhhhh--cc-CCCC-------ccC
Q 026125 80 TLTHLRQKHKN-----GEPITMVTAYDYPSAVHLDSA---GI-----DIC-LVGDSAAMVV--HG-HDTT-------LPI 135 (243)
Q Consensus 80 tv~~Lr~~kk~-----g~~ItmlTAYD~~sA~iae~A---Gi-----DiI-LVGDSlgmv~--lG-~~dT-------~~v 135 (243)
+-..+++.... ....--++||+...|.---.+ |+ ..| |.|=-++... .| |||- .|-
T Consensus 49 ~a~~~~~~m~~yd~d~~~y~~slGa~~g~~a~Q~~~a~k~~~~~t~~~~iYlSGW~vAa~~n~~g~~PDqS~yp~~sVP~ 128 (531)
T PRK06498 49 TAKIMRADMAAYDADSSKYTQSLGCWHGFIAQQKMISIKKHFGTTKRRYLYLSGWMVAALRSEFGPLPDQSMHEKTSVPA 128 (531)
T ss_pred HHHHHHHHHHhhcccchhhhhhhcCCcHHHHHHHHHHHHhccCCCccceEEehhhHHHhhhhccCCCCCcccCccccHHH
Confidence 44446665555 456778899999999888888 88 877 5554333311 22 4543 222
Q ss_pred CHHHHHHH---HHHH-----------Hc--cc-----------C-----CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHh
Q 026125 136 TLEEMLVH---CRAV-----------AR--GA-----------K-----RPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (243)
Q Consensus 136 TldeMi~h---~~aV-----------~R--ga-----------~-----~~fvVaDmPfgsY~~s~e~Av~nA~Rl~kea 183 (243)
-.+++-.. +-+| .+ |. + ...||+|..- +| .++..+.+.+.+++ ++
T Consensus 129 lv~~i~~~l~~AD~~~~~~lf~~~~~a~~~g~~~~~~~~~~~~d~~~~~~iPIIADaDt-Gf-G~~~nv~r~vk~~i-eA 205 (531)
T PRK06498 129 LIEELYTFLRQADARELNDLFRELDAAREAGDKAKEAAIQAKIDNFETHVVPIIADIDA-GF-GNEEATYLLAKKMI-EA 205 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhhccccccccccceEEEcCC-CC-CcHHHHHHHHHHHH-Hh
Confidence 23332111 0000 11 21 1 1246777766 67 47888888887776 69
Q ss_pred CCCEEEeCCCC
Q 026125 184 GMDAIKLEGGS 194 (243)
Q Consensus 184 GAdaVKLEGg~ 194 (243)
||.+|.|||-.
T Consensus 206 GAAgIhIEDQv 216 (531)
T PRK06498 206 GACCIQIENQV 216 (531)
T ss_pred CCeEEEEecCC
Confidence 99999999963
|
|
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=82.03 E-value=18 Score=32.35 Aligned_cols=125 Identities=14% Similarity=0.164 Sum_probs=69.1
Q ss_pred HHHhhhCCCc-EEEEecCCHHH----HHHHHHcCCCEE-E-eCcchhh-hhccCCCCccCCHHHHHHHHHHHHcccCCCc
Q 026125 84 LRQKHKNGEP-ITMVTAYDYPS----AVHLDSAGIDIC-L-VGDSAAM-VVHGHDTTLPITLEEMLVHCRAVARGAKRPL 155 (243)
Q Consensus 84 Lr~~kk~g~~-ItmlTAYD~~s----A~iae~AGiDiI-L-VGDSlgm-v~lG~~dT~~vTldeMi~h~~aV~Rga~~~f 155 (243)
++.+++.+.| ++-+...|... |+.+++ ++|+| + .|=.... +-.|.-..+.-..|.+.+.+++|++ ++.|
T Consensus 65 ~~~~~~~~~p~~vqi~g~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~p- 141 (233)
T cd02911 65 IKALKDSNVLVGVNVRSSSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVP- 141 (233)
T ss_pred HHHhhccCCeEEEEecCCCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCC-
Confidence 3334333434 34445555543 344445 45877 3 4533322 2334444444456777788888887 5666
Q ss_pred EEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc---hHHHHHHHHHcCCceeeccCC
Q 026125 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS---RITAARGIVEAGIAVMGHVGL 217 (243)
Q Consensus 156 vVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~---~~~~i~~L~~~GIPV~GHiGL 217 (243)
|.+=+.- ++ + ++.++.|.+ ++++|+|++++..+... ....|+.+. .+|||+|==|+
T Consensus 142 VsvKir~-g~--~-~~~~~la~~-l~~aG~d~ihv~~~~~g~~ad~~~I~~i~-~~ipVIgnGgI 200 (233)
T cd02911 142 VSVKIRA-GV--D-VDDEELARL-IEKAGADIIHVDAMDPGNHADLKKIRDIS-TELFIIGNNSV 200 (233)
T ss_pred EEEEEcC-Cc--C-cCHHHHHHH-HHHhCCCEEEECcCCCCCCCcHHHHHHhc-CCCEEEEECCc
Confidence 4444433 23 2 455555544 55799999999876431 224455554 57999985443
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=82.02 E-value=28 Score=32.86 Aligned_cols=89 Identities=15% Similarity=0.197 Sum_probs=58.0
Q ss_pred CcEEEEecCCHHHHHHHHHcCCCEEEe-C--cchh---------------hhhccCCCCc--------cCCHHHHHHHHH
Q 026125 92 EPITMVTAYDYPSAVHLDSAGIDICLV-G--DSAA---------------MVVHGHDTTL--------PITLEEMLVHCR 145 (243)
Q Consensus 92 ~~ItmlTAYD~~sA~iae~AGiDiILV-G--DSlg---------------mv~lG~~dT~--------~vTldeMi~h~~ 145 (243)
..+.|--|-+...|..+.++|+|+|-+ + ..=. -...||.+.. ...++. .+
T Consensus 112 ~~l~MAD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~el----Lk 187 (283)
T cd04727 112 KVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYEL----VK 187 (283)
T ss_pred CCcEEccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHH----HH
Confidence 688999999999999999999999942 2 1111 0235553332 244443 34
Q ss_pred HHHcccCCCcE-EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 146 AVARGAKRPLL-VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 146 aV~Rga~~~fv-VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
.+++..+.|++ ++. |+. .+++++ .+++ +.||++|-+=.+
T Consensus 188 ~l~~~~~iPVV~iAe---GGI-~Tpena----~~v~-e~GAdgVaVGSA 227 (283)
T cd04727 188 ETAKLGRLPVVNFAA---GGV-ATPADA----ALMM-QLGADGVFVGSG 227 (283)
T ss_pred HHHHhcCCCeEEEEe---CCC-CCHHHH----HHHH-HcCCCEEEEcHH
Confidence 45555667754 354 345 378887 5666 589999988554
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=81.91 E-value=37 Score=30.25 Aligned_cols=110 Identities=19% Similarity=0.243 Sum_probs=73.9
Q ss_pred HHHHHhhhCCCcEEEEecCCHHHH----HHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 82 THLRQKHKNGEPITMVTAYDYPSA----VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 82 ~~Lr~~kk~g~~ItmlTAYD~~sA----~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
..+.++..+..-+.++...|...| +.+.+.|+++|=++-. .+ +=+...+.+++..|+..|-
T Consensus 6 ~~~~~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~-----------~~----~~~~~I~~l~~~~p~~~IG 70 (212)
T PRK05718 6 TSIEEILRAGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLR-----------TP----AALEAIRLIAKEVPEALIG 70 (212)
T ss_pred HHHHHHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecC-----------Cc----cHHHHHHHHHHHCCCCEEE
Confidence 345555567778889999887765 4556779999966611 11 2233445566666776666
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCcee-eccCCcccc
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVM-GHVGLTPQA 221 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~-GHiGLtPQ~ 221 (243)
+|+ - .+++++ .+.+ ++||+-+---+-. +++++...+.|||.+ |- +||..
T Consensus 71 AGT----V-l~~~~a----~~a~-~aGA~FivsP~~~---~~vi~~a~~~~i~~iPG~--~TptE 120 (212)
T PRK05718 71 AGT----V-LNPEQL----AQAI-EAGAQFIVSPGLT---PPLLKAAQEGPIPLIPGV--STPSE 120 (212)
T ss_pred Eee----c-cCHHHH----HHHH-HcCCCEEECCCCC---HHHHHHHHHcCCCEeCCC--CCHHH
Confidence 775 3 366665 3444 7999999877664 467899999999999 74 56643
|
|
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=81.91 E-value=6.6 Score=37.12 Aligned_cols=114 Identities=14% Similarity=0.074 Sum_probs=66.2
Q ss_pred HHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEE--EeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE-eeC
Q 026125 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC--LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-GDL 160 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiI--LVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV-aDm 160 (243)
|.+|.|+| +++-+-+...|+++|++|+|.+ ++|=..--+--| +-.-+.+ ..+.++|++.++.|.+. .=.
T Consensus 12 ~a~m~kgg---vimdv~~~~~a~iae~~g~~~v~~~~~~psd~~~~g----g~~Rm~~-p~~I~aIk~~V~iPVigk~Ri 83 (293)
T PRK04180 12 FAEMLKGG---VIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAG----GVARMAD-PKMIEEIMDAVSIPVMAKARI 83 (293)
T ss_pred HHHHhcCC---eEEEeCCHHHHHHHHHhChHHHHHccCCCchHhhcC----CeeecCC-HHHHHHHHHhCCCCeEEeehh
Confidence 67787777 6677788999999999999965 454222222223 1111111 34456888888888433 232
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc---hHHHHHHHHHc-CCceeeccCCcc
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS---RITAARGIVEA-GIAVMGHVGLTP 219 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~---~~~~i~~L~~~-GIPV~GHiGLtP 219 (243)
.| +..| +.+.+.|+|.| |..+. ..+++..+-.. ++|+|+-+.=..
T Consensus 84 gh----------~~Ea-~~L~~~GvDiI---D~Te~lrpad~~~~~~K~~f~~~fmad~~~l~ 132 (293)
T PRK04180 84 GH----------FVEA-QILEALGVDYI---DESEVLTPADEEYHIDKWDFTVPFVCGARNLG 132 (293)
T ss_pred hH----------HHHH-HHHHHcCCCEE---eccCCCCchHHHHHHHHHHcCCCEEccCCCHH
Confidence 22 2333 34557999999 33221 22334444443 899988654433
|
|
| >COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.86 E-value=18 Score=33.56 Aligned_cols=101 Identities=25% Similarity=0.266 Sum_probs=69.6
Q ss_pred HHHHhhhCCCcEEEE--ecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 83 HLRQKHKNGEPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 83 ~Lr~~kk~g~~Itml--TAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
.||+..++|++..-+ .--|..++.++..+|+|.+++-.- ..+.+.+.+++..+++.-....| |+=.
T Consensus 7 ~fK~~L~~g~~qiGlw~~l~~p~~~Ei~A~aGfDwl~iD~E----------Hapnd~~sl~~qL~a~~~~~~~p--vVR~ 74 (255)
T COG3836 7 SFKAALAAGRPQIGLWLSLPDPYMAEILATAGFDWLLIDGE----------HAPNDLQSLLHQLQAVAAYASPP--VVRP 74 (255)
T ss_pred hHHHHHhCCCceEEeeecCCcHHHHHHHHhcCCCEEEeccc----------ccCccHHHHHHHHHHhhccCCCC--eeeC
Confidence 477777888875433 446899999999999999987522 24667888889999997666666 4556
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHH
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE 206 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~ 206 (243)
|.|. +..+ .|++ ..||+.+-+-=-. ..++ .+.++.
T Consensus 75 p~g~----~~~I----kq~L-D~GAqtlliPmV~-s~eq-Ar~~V~ 109 (255)
T COG3836 75 PVGD----PVMI----KQLL-DIGAQTLLIPMVD-TAEQ-ARQAVA 109 (255)
T ss_pred CCCC----HHHH----HHHH-ccccceeeeeccC-CHHH-HHHHHH
Confidence 6633 3455 6788 6899999775332 2233 455554
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.85 E-value=36 Score=31.73 Aligned_cols=122 Identities=27% Similarity=0.322 Sum_probs=70.7
Q ss_pred HHHhhhC--CCcEEEEecCCH------HHHHHHHHcCCCEEEeCcchhhhhccCCC---------CccCCHHHHHHHHHH
Q 026125 84 LRQKHKN--GEPITMVTAYDY------PSAVHLDSAGIDICLVGDSAAMVVHGHDT---------TLPITLEEMLVHCRA 146 (243)
Q Consensus 84 Lr~~kk~--g~~ItmlTAYD~------~sA~iae~AGiDiILVGDSlgmv~lG~~d---------T~~vTldeMi~h~~a 146 (243)
|.+++.+ +-.|.-+|+=|. ..++.+.++|+|+|=.|-..+-=+.=-|. ...+|+++.++..+.
T Consensus 8 F~~l~~~~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~ 87 (265)
T COG0159 8 FAQLKAENRGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEE 87 (265)
T ss_pred HHHHHHhCCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4444433 457888888662 23445579999999655332210000000 135789999999999
Q ss_pred HHc-ccCCCcEEeeCCCCCCcCCH--HHHHHHHHHHHHHhCCCEEEeCCCCC-chHHHHHHHHHcCCce
Q 026125 147 VAR-GAKRPLLVGDLPFGTYESST--NQAVDTAVRILKEGGMDAIKLEGGSP-SRITAARGIVEAGIAV 211 (243)
Q Consensus 147 V~R-ga~~~fvVaDmPfgsY~~s~--e~Av~nA~Rl~keaGAdaVKLEGg~~-~~~~~i~~L~~~GIPV 211 (243)
++. +.+.|+++ | +| .|+ ...++.=.+..+++|+|++-+-|=.. +...+.+...+.||-.
T Consensus 88 ~r~~~~~~Pivl--m---~Y-~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~ 150 (265)
T COG0159 88 IRAKGVKVPIVL--M---TY-YNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDP 150 (265)
T ss_pred HHhcCCCCCEEE--E---Ee-ccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcE
Confidence 984 45556433 2 33 233 23344435566789999999988753 3344455555566543
|
|
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=81.83 E-value=32 Score=32.06 Aligned_cols=110 Identities=17% Similarity=0.143 Sum_probs=68.7
Q ss_pred HHhhhCCCcEE---EEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCC
Q 026125 85 RQKHKNGEPIT---MVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (243)
Q Consensus 85 r~~kk~g~~It---mlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmP 161 (243)
.++..=.-||. |-.+-|...|..+-++|.=-++ | .| ..+.|++-...+.++..++.|| -+++.
T Consensus 5 ~~~lgi~~Pii~apM~~~s~~~la~avs~aGglG~l-~-------~~-----~~~~~~l~~~i~~~~~~t~~pf-gvn~~ 70 (307)
T TIGR03151 5 CDLLGIEYPIFQGGMAWVATGSLAAAVSNAGGLGII-G-------AG-----NAPPDVVRKEIRKVKELTDKPF-GVNIM 70 (307)
T ss_pred hHHhCCCCCEEcCCCCCCCCHHHHHHHHhCCCccee-c-------cc-----cCCHHHHHHHHHHHHHhcCCCc-EEeee
Confidence 33333445666 4467788888888888832111 1 11 1356777666677776666664 45544
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccC
Q 026125 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVG 216 (243)
Q Consensus 162 fgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiG 216 (243)
+.. ...++. .+++.+.|++.|-+-+|.. ..+++.|.+.|+.|+..++
T Consensus 71 ~~~--~~~~~~----~~~~~~~~v~~v~~~~g~p--~~~i~~lk~~g~~v~~~v~ 117 (307)
T TIGR03151 71 LLS--PFVDEL----VDLVIEEKVPVVTTGAGNP--GKYIPRLKENGVKVIPVVA 117 (307)
T ss_pred cCC--CCHHHH----HHHHHhCCCCEEEEcCCCc--HHHHHHHHHcCCEEEEEcC
Confidence 421 122332 4555578999999987754 3468999999999997764
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=81.74 E-value=3.5 Score=36.90 Aligned_cols=89 Identities=12% Similarity=0.119 Sum_probs=60.4
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG 184 (243)
++.+.++|+|.|.+.|++|. .+-+++-...+.+++..+. .+.|-. +.+.--++.|+...+ ++|
T Consensus 145 ~~~~~~~G~~~i~l~DT~G~----------~~P~~v~~lv~~l~~~~~~-----~l~~H~-Hn~~Gla~An~laAi-~aG 207 (259)
T cd07939 145 AEVAQEAGADRLRFADTVGI----------LDPFTTYELIRRLRAATDL-----PLEFHA-HNDLGLATANTLAAV-RAG 207 (259)
T ss_pred HHHHHHCCCCEEEeCCCCCC----------CCHHHHHHHHHHHHHhcCC-----eEEEEe-cCCCChHHHHHHHHH-HhC
Confidence 45566889999999998874 4667777777888877652 234533 467888999999999 589
Q ss_pred CCEEEeCC----C---CCchHHHHHHHHHc-CCc
Q 026125 185 MDAIKLEG----G---SPSRITAARGIVEA-GIA 210 (243)
Q Consensus 185 AdaVKLEG----g---~~~~~~~i~~L~~~-GIP 210 (243)
|+.|---= + .--.+.++..|-+. |+.
T Consensus 208 ~~~vd~s~~G~G~~aGN~~tE~lv~~l~~~~g~~ 241 (259)
T cd07939 208 ATHVSVTVNGLGERAGNAALEEVVMALKHLYGRD 241 (259)
T ss_pred CCEEEEecccccccccCcCHHHHHHHHHHhcCCC
Confidence 99764321 0 11244556666665 664
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=81.74 E-value=16 Score=31.51 Aligned_cols=73 Identities=18% Similarity=0.143 Sum_probs=49.2
Q ss_pred EEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHH
Q 026125 94 ITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQA 172 (243)
Q Consensus 94 ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~A 172 (243)
-.+++|++...+..+.+.|+|.+-+ ||+.....++ ..+++++-.+ .|++ |-|+- +++++
T Consensus 107 ~~i~G~~t~~e~~~A~~~Gadyv~~----------Fpt~~~~G~~----~l~~~~~~~~~ipvv----aiGGI--~~~n~ 166 (187)
T PRK07455 107 PIIPGALTPTEIVTAWQAGASCVKV----------FPVQAVGGAD----YIKSLQGPLGHIPLI----PTGGV--TLENA 166 (187)
T ss_pred CEEcCcCCHHHHHHHHHCCCCEEEE----------CcCCcccCHH----HHHHHHhhCCCCcEE----EeCCC--CHHHH
Confidence 4678899999999999999999965 5543222333 3566776664 5542 33444 55444
Q ss_pred HHHHHHHHHHhCCCEEEeC
Q 026125 173 VDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 173 v~nA~Rl~keaGAdaVKLE 191 (243)
..++ ++||++|=+-
T Consensus 167 ----~~~l-~aGa~~vav~ 180 (187)
T PRK07455 167 ----QAFI-QAGAIAVGLS 180 (187)
T ss_pred ----HHHH-HCCCeEEEEe
Confidence 7777 5899998663
|
|
| >cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Probab=81.68 E-value=14 Score=32.85 Aligned_cols=91 Identities=24% Similarity=0.357 Sum_probs=58.3
Q ss_pred cCCHHHH----HHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHH
Q 026125 99 AYDYPSA----VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVD 174 (243)
Q Consensus 99 AYD~~sA----~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~ 174 (243)
.||...| +.+++.|++.|= + |+..++ +...+.+++..+.| |.+|- +. .++++.
T Consensus 139 ~~~~~~a~~~~~~l~~~~i~~iE--e-------------P~~~~d-~~~~~~l~~~~~ip-ia~dE---~~-~~~~~~-- 195 (265)
T cd03315 139 GWTPKQAIRALRALEDLGLDYVE--Q-------------PLPADD-LEGRAALARATDTP-IMADE---SA-FTPHDA-- 195 (265)
T ss_pred CcCHHHHHHHHHHHHhcCCCEEE--C-------------CCCccc-HHHHHHHHhhCCCC-EEECC---CC-CCHHHH--
Confidence 3776655 445666776662 1 222222 23345677777777 66774 34 366665
Q ss_pred HHHHHHHHhCCCEEEeC----CCCCchHHHHHHHHHcCCceeec
Q 026125 175 TAVRILKEGGMDAIKLE----GGSPSRITAARGIVEAGIAVMGH 214 (243)
Q Consensus 175 nA~Rl~keaGAdaVKLE----Gg~~~~~~~i~~L~~~GIPV~GH 214 (243)
.+++++..+|.|.+. ||-.....+++.....||+++-|
T Consensus 196 --~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~ 237 (265)
T cd03315 196 --FRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVG 237 (265)
T ss_pred --HHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEec
Confidence 567777779999886 78544556566668899999988
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. |
| >PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed | Back alignment and domain information |
|---|
Probab=81.66 E-value=4.8 Score=40.94 Aligned_cols=124 Identities=19% Similarity=0.208 Sum_probs=69.1
Q ss_pred HcCCCEEEeCcchhhhhccCCCCc-cCCHHHHHHHHHHHHccc--CCCcEEeeC-CCCCC---c-CCHHHHHH---HHHH
Q 026125 110 SAGIDICLVGDSAAMVVHGHDTTL-PITLEEMLVHCRAVARGA--KRPLLVGDL-PFGTY---E-SSTNQAVD---TAVR 178 (243)
Q Consensus 110 ~AGiDiILVGDSlgmv~lG~~dT~-~vTldeMi~h~~aV~Rga--~~~fvVaDm-PfgsY---~-~s~e~Av~---nA~R 178 (243)
+||.|+|.+- +.+.+..++...+ .-..+++...+-.++|.+ ...+|.+++ |+|.| . .+.+++.+ .-.+
T Consensus 54 ~AGAdvi~Tn-Ty~as~~~l~~~g~~~~~~~l~~~av~lAr~a~~~~~~VagsiGP~g~~~~~~~~~~~~~~~~~~~~~~ 132 (612)
T PRK08645 54 EAGADVIQTN-TFGANRIKLKRYGLEDKVKEINRAAVRLAREAAGDDVYVAGTIGPIGGRGPLGDISLEEIRREFREQID 132 (612)
T ss_pred HhCCCEEecC-cccccHHHHHhcCchHHHHHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 5788877543 3333222222211 123566655444444433 347788999 67665 1 24454433 2345
Q ss_pred HHHHhCCCEEEeCCCCC--chHHHHHHHHHcC-CceeeccCCcccccccccCccccccCHHhhcc
Q 026125 179 ILKEGGMDAIKLEGGSP--SRITAARGIVEAG-IAVMGHVGLTPQAISVLGGFRPQGKNVTSAVK 240 (243)
Q Consensus 179 l~keaGAdaVKLEGg~~--~~~~~i~~L~~~G-IPV~GHiGLtPQ~~~~~GGykvqGkt~~~A~~ 240 (243)
.+.++|+|.+-+|--.. +...+++++.+.+ +||+ +.++... +|.-.-|.+.+++..
T Consensus 133 ~l~~~gvD~l~~ET~~~~~Ea~a~~~a~~~~~~~p~~--~Sf~~~~----~g~l~~G~~~~~~~~ 191 (612)
T PRK08645 133 ALLEEGVDGLLLETFYDLEELLLALEAAREKTDLPII--AQVAFHE----DGVTQNGTSLEEALK 191 (612)
T ss_pred HHHhcCCCEEEEEccCCHHHHHHHHHHHHHhCCCcEE--EEEEECC----CCeeCCCCCHHHHHH
Confidence 55579999999996642 2334566676676 8996 5566543 344456666666544
|
|
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=81.57 E-value=14 Score=33.65 Aligned_cols=95 Identities=17% Similarity=0.132 Sum_probs=61.7
Q ss_pred HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCC
Q 026125 107 HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGM 185 (243)
Q Consensus 107 iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGA 185 (243)
...+.|+|-|++..|.|- ...+|.||-..-.+.+++.+ ++..|++... . +.+++++.+.+. ++.||
T Consensus 29 ~l~~~Gv~gi~v~GstGE-------~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~----~-~t~~~i~~a~~a-~~~Ga 95 (289)
T cd00951 29 WLLSYGAAALFAAGGTGE-------FFSLTPDEYAQVVRAAVEETAGRVPVLAGAG----Y-GTATAIAYAQAA-EKAGA 95 (289)
T ss_pred HHHHcCCCEEEECcCCcC-------cccCCHHHHHHHHHHHHHHhCCCCCEEEecC----C-CHHHHHHHHHHH-HHhCC
Confidence 345689999987766644 24678898777777666654 3344666552 2 568888887655 57999
Q ss_pred CEEEeCCCCC------chHHHHHHHHH-cCCceeec
Q 026125 186 DAIKLEGGSP------SRITAARGIVE-AGIAVMGH 214 (243)
Q Consensus 186 daVKLEGg~~------~~~~~i~~L~~-~GIPV~GH 214 (243)
|++-+--... ......+.+.+ .++||+--
T Consensus 96 d~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lY 131 (289)
T cd00951 96 DGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVY 131 (289)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 9997753321 12233455655 57998754
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >PRK07084 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=81.39 E-value=51 Score=31.49 Aligned_cols=149 Identities=13% Similarity=0.113 Sum_probs=90.8
Q ss_pred CCCHHHH-HHhhhCCCcEEEEecCCHHHHH----HHHHcCCCEEE-eCcchhhhhccCCCCccCCHHHHHHHHHHHHccc
Q 026125 78 RVTLTHL-RQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA 151 (243)
Q Consensus 78 ~~tv~~L-r~~kk~g~~ItmlTAYD~~sA~----iae~AGiDiIL-VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga 151 (243)
-+++.++ ++.++++--+-..++|+..+++ .||+.+.++|+ +..+. .-..|.+ .++.|...++..++-+
T Consensus 9 lv~~k~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~-~~~~g~~-----~~~~~~~~~~~~a~~a 82 (321)
T PRK07084 9 LVNTREMFAKAVKGGYAIPAYNFNNMEQLQAIIQACVETKSPVILQVSKGA-RKYANAT-----LLRYMAQGAVEYAKEL 82 (321)
T ss_pred ccCHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhH-HhhCCch-----HHHHHHHHHHHHHHHc
Confidence 3566664 4556777888999999999986 46888999887 44332 2112211 1444555555555433
Q ss_pred --CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCCccccc
Q 026125 152 --KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTPQAI 222 (243)
Q Consensus 152 --~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGLtPQ~~ 222 (243)
+-| |+.-+..+ .+.|.. .+.+ ++|...|.+.|+... +..+++..-..|++|=|=||-++..-
T Consensus 83 ~~~VP-V~lHLDHg---~~~e~i----~~ai-~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~e 153 (321)
T PRK07084 83 GCPIP-IVLHLDHG---DSFELC----KDCI-DSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVE 153 (321)
T ss_pred CCCCc-EEEECCCC---CCHHHH----HHHH-HcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCcc
Confidence 345 67777773 245544 5666 589999999888432 23456666788999988777776332
Q ss_pred ccccCccccccCHHhhccc
Q 026125 223 SVLGGFRPQGKNVTSAVKV 241 (243)
Q Consensus 223 ~~~GGykvqGkt~~~A~~l 241 (243)
.-..+-...=.+.++|.++
T Consensus 154 d~~~~~~~~~T~peeA~~F 172 (321)
T PRK07084 154 DEVSAEHHTYTQPEEVEDF 172 (321)
T ss_pred CCccCcccccCCHHHHHHH
Confidence 2111111222456777664
|
|
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=81.36 E-value=14 Score=34.12 Aligned_cols=107 Identities=18% Similarity=0.186 Sum_probs=67.5
Q ss_pred HHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 026125 106 VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (243)
Q Consensus 106 ~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG 184 (243)
....+.|+|-|++..|.|= ...+|.||=..-.+.+++.+ ++..|++.. + . |.+++++.+.+. ++.|
T Consensus 35 ~~l~~~Gv~Gi~~~GstGE-------~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv---~-~-~t~~~i~~~~~a-~~~G 101 (303)
T PRK03620 35 EWLAPYGAAALFAAGGTGE-------FFSLTPDEYSQVVRAAVETTAGRVPVIAGA---G-G-GTAQAIEYAQAA-ERAG 101 (303)
T ss_pred HHHHHcCCCEEEECcCCcC-------cccCCHHHHHHHHHHHHHHhCCCCcEEEec---C-C-CHHHHHHHHHHH-HHhC
Confidence 3455679999988766543 24578888777777666544 334466655 2 2 678999988665 4799
Q ss_pred CCEEEeCCCCC------chHHHHHHHHHc-CCceee----ccCCcccccccc
Q 026125 185 MDAIKLEGGSP------SRITAARGIVEA-GIAVMG----HVGLTPQAISVL 225 (243)
Q Consensus 185 AdaVKLEGg~~------~~~~~i~~L~~~-GIPV~G----HiGLtPQ~~~~~ 225 (243)
||+|-+--... ......+.+.++ ++||+- .+.|.|+....+
T Consensus 102 adav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L 153 (303)
T PRK03620 102 ADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARL 153 (303)
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHH
Confidence 99997754421 123334556664 799883 245555544433
|
|
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=81.26 E-value=28 Score=31.28 Aligned_cols=119 Identities=10% Similarity=-0.052 Sum_probs=68.3
Q ss_pred CCCcEEEEecCCHHHHHHHHHcC----CCEEEeCcchhhh----hccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCC
Q 026125 90 NGEPITMVTAYDYPSAVHLDSAG----IDICLVGDSAAMV----VHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (243)
Q Consensus 90 ~g~~ItmlTAYD~~sA~iae~AG----iDiILVGDSlgmv----~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmP 161 (243)
.+.++.+++-........+.++| +|.|-+-++++=. .+|. +..=.++++...++.+++ ... -+....|
T Consensus 60 ~~~~~~~l~r~~~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~--~~~~~~~~~~~~i~~a~~-~G~-~v~~~~~ 135 (268)
T cd07940 60 LNAEICGLARAVKKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKK--TREEVLERAVEAVEYAKS-HGL-DVEFSAE 135 (268)
T ss_pred CCCEEEEEccCCHhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCC--CHHHHHHHHHHHHHHHHH-cCC-eEEEeee
Confidence 35677777634444455566778 9998766555322 1221 111112333333333332 122 2457778
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc-C---Cceeec
Q 026125 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-G---IAVMGH 214 (243)
Q Consensus 162 fgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~-G---IPV~GH 214 (243)
+.+. .+++..++.+.++. +.|++.|.|-|... ....+++.|.+. + ||+--|
T Consensus 136 ~~~~-~~~~~~~~~~~~~~-~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H 195 (268)
T cd07940 136 DATR-TDLDFLIEVVEAAI-EAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVH 195 (268)
T ss_pred cCCC-CCHHHHHHHHHHHH-HcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEE
Confidence 8555 57888888777776 68999999998732 344556666664 2 665555
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=81.12 E-value=23 Score=33.23 Aligned_cols=95 Identities=14% Similarity=0.141 Sum_probs=51.6
Q ss_pred HHHHhhhC-CCcEEE---EecCCHHHHHHHHHcCCCEEEeCcchhhhhc-------------cCCCCccCCHHHHHHHHH
Q 026125 83 HLRQKHKN-GEPITM---VTAYDYPSAVHLDSAGIDICLVGDSAAMVVH-------------GHDTTLPITLEEMLVHCR 145 (243)
Q Consensus 83 ~Lr~~kk~-g~~Itm---lTAYD~~sA~iae~AGiDiILVGDSlgmv~l-------------G~~dT~~vTldeMi~h~~ 145 (243)
.++...+. +-|+.+ -+..+...|+.++++|+|+|-|+..-|.... .+...-.++.-+.+ .
T Consensus 170 ~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l---~ 246 (333)
T TIGR02151 170 KIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASL---L 246 (333)
T ss_pred HHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHH---H
Confidence 34444333 567765 2336788899999999999977632221100 00000011111222 2
Q ss_pred HHHc-ccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 146 AVAR-GAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 146 aV~R-ga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
.+++ ..+.| |+++= +. .+.+++ .+.+. .|||+|-+
T Consensus 247 ~~~~~~~~ip-VIasG---GI-~~~~di----~kaLa-lGAd~V~i 282 (333)
T TIGR02151 247 EVRSDAPDAP-IIASG---GL-RTGLDV----AKAIA-LGADAVGM 282 (333)
T ss_pred HHHhcCCCCe-EEEEC---CC-CCHHHH----HHHHH-hCCCeehh
Confidence 2333 33444 67774 45 367777 45663 68999988
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=81.01 E-value=27 Score=29.39 Aligned_cols=87 Identities=13% Similarity=0.067 Sum_probs=50.8
Q ss_pred HhhhCCCcEEE--EecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC
Q 026125 86 QKHKNGEPITM--VTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG 163 (243)
Q Consensus 86 ~~kk~g~~Itm--lTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg 163 (243)
..++.|-++.+ +++.+...+..+...|+|.++++=+......| .+ ......+.+++.. +.++++|-
T Consensus 98 ~~~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~~----~~----~~~~~i~~~~~~~-~~~i~~~G--- 165 (202)
T cd04726 98 AAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAAG----GW----WPEDDLKKVKKLL-GVKVAVAG--- 165 (202)
T ss_pred HHHHcCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCcccccccC----CC----CCHHHHHHHHhhc-CCCEEEEC---
Confidence 33445666553 89999999988888899998874111001111 11 2234445565443 34456663
Q ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 164 TYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 164 sY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
+ .|+++ +.+++ ++|||++-+-
T Consensus 166 G--I~~~~----i~~~~-~~Gad~vvvG 186 (202)
T cd04726 166 G--ITPDT----LPEFK-KAGADIVIVG 186 (202)
T ss_pred C--cCHHH----HHHHH-hcCCCEEEEe
Confidence 2 35554 35666 5899998774
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=80.96 E-value=15 Score=33.50 Aligned_cols=110 Identities=23% Similarity=0.225 Sum_probs=63.9
Q ss_pred HHHHHHHHcCCCEEEeCcchhh-hhccCCCCccCCHHHHHHHHHHHHcccCC-CcEEeeC--CCCCCcCCHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAM-VVHGHDTTLPITLEEMLVHCRAVARGAKR-PLLVGDL--PFGTYESSTNQAVDTAVR 178 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgm-v~lG~~dT~~vTldeMi~h~~aV~Rga~~-~fvVaDm--PfgsY~~s~e~Av~nA~R 178 (243)
.-|...+++|||.|=+|..... +.+++-+..+ ++ .++.+++..++ .+..--. .+-+|..-|.++.+.-++
T Consensus 25 ~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~--~e----~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~ 98 (275)
T cd07937 25 PIAEALDEAGFFSLEVWGGATFDVCMRFLNEDP--WE----RLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVE 98 (275)
T ss_pred HHHHHHHHcCCCEEEccCCcchhhhccccCCCH--HH----HHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHH
Confidence 3588899999999988853321 3344443322 22 22344443332 2221111 111233334556666667
Q ss_pred HHHHhCCCEEEeCCCCCc---hHHHHHHHHHcCCceeeccCCc
Q 026125 179 ILKEGGMDAIKLEGGSPS---RITAARGIVEAGIAVMGHVGLT 218 (243)
Q Consensus 179 l~keaGAdaVKLEGg~~~---~~~~i~~L~~~GIPV~GHiGLt 218 (243)
...+.|++.|.+-..... ....++...+.|.-|+.+++++
T Consensus 99 ~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~ 141 (275)
T cd07937 99 KAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYT 141 (275)
T ss_pred HHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 777899999999766432 3445677788999999888654
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Probab=80.79 E-value=10 Score=34.67 Aligned_cols=64 Identities=23% Similarity=0.289 Sum_probs=45.8
Q ss_pred HHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC----CCCCchHHHHHHHHHcCCceeec
Q 026125 142 VHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE----GGSPSRITAARGIVEAGIAVMGH 214 (243)
Q Consensus 142 ~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE----Gg~~~~~~~i~~L~~~GIPV~GH 214 (243)
...+.+++..+.| |.+|= +. .++++. .+++++.++|.|.+. ||-.....++....+.||+|+-|
T Consensus 218 ~~~~~L~~~~~ip-Ia~~E---~~-~~~~~~----~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~ 285 (316)
T cd03319 218 DGLAYLRDKSPLP-IMADE---SC-FSAADA----ARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVG 285 (316)
T ss_pred HHHHHHHhcCCCC-EEEeC---CC-CCHHHH----HHHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3345688877777 56663 33 366665 578877899999987 77655566666667889999987
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=80.68 E-value=21 Score=34.50 Aligned_cols=99 Identities=20% Similarity=0.228 Sum_probs=63.2
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCC-ccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT-~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
+..+|+.. -+..|..=++=++..|+-..+||+|++-||=.-|.++-=..-| ..+..-.-++.|..+++...-| ||+|
T Consensus 142 ik~ik~~~-P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvp-iIAD 219 (346)
T PRK05096 142 VAKAREAW-PDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQ-IVSD 219 (346)
T ss_pred HHHHHHhC-CCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCC-EEec
Confidence 44455433 2355666688999999999999999998886655544222111 1122333467777777777666 8999
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
=.. .| .-+. .+.+ .+|||+|.+
T Consensus 220 GGi-~~---sGDI----~KAl-aaGAd~VMl 241 (346)
T PRK05096 220 GGC-TV---PGDV----AKAF-GGGADFVML 241 (346)
T ss_pred CCc-cc---ccHH----HHHH-HcCCCEEEe
Confidence 655 22 2344 2445 489999988
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=80.67 E-value=8.6 Score=32.71 Aligned_cols=84 Identities=14% Similarity=0.131 Sum_probs=50.3
Q ss_pred HcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEE
Q 026125 110 SAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIK 189 (243)
Q Consensus 110 ~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVK 189 (243)
+.|+|+|=+|-++ +...=+...+.+++-.+...+++|+.+. +++.. ..+.+.++|||.|-
T Consensus 22 ~~~v~~iev~~~l-------------~~~~g~~~i~~l~~~~~~~~i~~d~k~~----d~~~~---~~~~~~~~Gad~i~ 81 (206)
T TIGR03128 22 ADYVDIIEIGTPL-------------IKNEGIEAVKEMKEAFPDRKVLADLKTM----DAGEY---EAEQAFAAGADIVT 81 (206)
T ss_pred ccCeeEEEeCCHH-------------HHHhCHHHHHHHHHHCCCCEEEEEEeec----cchHH---HHHHHHHcCCCEEE
Confidence 4577777676333 1111134556676665555678999874 23321 12334479999986
Q ss_pred eCCCC--CchHHHHHHHHHcCCceee
Q 026125 190 LEGGS--PSRITAARGIVEAGIAVMG 213 (243)
Q Consensus 190 LEGg~--~~~~~~i~~L~~~GIPV~G 213 (243)
+-.-. .....+++.+.+.|++++.
T Consensus 82 vh~~~~~~~~~~~i~~~~~~g~~~~~ 107 (206)
T TIGR03128 82 VLGVADDATIKGAVKAAKKHGKEVQV 107 (206)
T ss_pred EeccCCHHHHHHHHHHHHHcCCEEEE
Confidence 54332 2235678888999999985
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=80.61 E-value=23 Score=30.87 Aligned_cols=94 Identities=21% Similarity=0.116 Sum_probs=51.3
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHH---cccCCCcEEeeCCCCCCc----CCHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVA---RGAKRPLLVGDLPFGTYE----SSTNQAVDTAV 177 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~---Rga~~~fvVaDmPfgsY~----~s~e~Av~nA~ 177 (243)
+..+-++|+|.+.+-...+. ...++++..+++++ +....++++ |....+.+ .+. +.++.+.
T Consensus 82 v~~a~~~Ga~~v~~~~~~~~----------~~~~~~~~~i~~v~~~~~~~g~~~ii-e~~~~g~~~~~~~~~-~~i~~~~ 149 (235)
T cd00958 82 VEDAVRLGADAVGVTVYVGS----------EEEREMLEELARVAAEAHKYGLPLIA-WMYPRGPAVKNEKDP-DLIAYAA 149 (235)
T ss_pred HHHHHHCCCCEEEEEEecCC----------chHHHHHHHHHHHHHHHHHcCCCEEE-EEeccCCcccCccCH-HHHHHHH
Confidence 44466889997755433321 11345555555544 456677665 43221221 133 4455545
Q ss_pred HHHHHhCCCEEEeCCCCCchHHHHHHHHHcC-Ccee
Q 026125 178 RILKEGGMDAIKLEGGSPSRITAARGIVEAG-IAVM 212 (243)
Q Consensus 178 Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~G-IPV~ 212 (243)
|...+.|||.||+.... -.+.++.+++.. +||+
T Consensus 150 ~~a~~~GaD~Ik~~~~~--~~~~~~~i~~~~~~pvv 183 (235)
T cd00958 150 RIGAELGADIVKTKYTG--DAESFKEVVEGCPVPVV 183 (235)
T ss_pred HHHHHHCCCEEEecCCC--CHHHHHHHHhcCCCCEE
Confidence 56667999999996432 133467777544 6664
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=80.57 E-value=17 Score=33.41 Aligned_cols=91 Identities=10% Similarity=0.137 Sum_probs=59.7
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG 184 (243)
++.+.++|+|.|.+.|++|. .+-+++....+.+++..+.. .+.| -.+.+.--|+.|+...+ ++|
T Consensus 153 ~~~~~~~G~~~i~l~DT~G~----------~~P~~v~~l~~~l~~~~~~~----~i~~-H~Hnd~Gla~AN~laA~-~aG 216 (280)
T cd07945 153 VDFLSDLPIKRIMLPDTLGI----------LSPFETYTYISDMVKRYPNL----HFDF-HAHNDYDLAVANVLAAV-KAG 216 (280)
T ss_pred HHHHHHcCCCEEEecCCCCC----------CCHHHHHHHHHHHHhhCCCC----eEEE-EeCCCCCHHHHHHHHHH-HhC
Confidence 56677889999999998866 34556667777777655432 1223 23467788999999999 589
Q ss_pred CCEEEe--CCCC-----CchHHHHHHHH-HcCCce
Q 026125 185 MDAIKL--EGGS-----PSRITAARGIV-EAGIAV 211 (243)
Q Consensus 185 AdaVKL--EGg~-----~~~~~~i~~L~-~~GIPV 211 (243)
|+.|.. -|=. --.++++..|. ..|+.+
T Consensus 217 a~~vd~s~~GlGe~aGN~~~E~~v~~L~~~~g~~t 251 (280)
T cd07945 217 IKGLHTTVNGLGERAGNAPLASVIAVLKDKLKVKT 251 (280)
T ss_pred CCEEEEecccccccccCccHHHHHHHHHHhcCCCc
Confidence 998773 2211 12455566673 356653
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=80.52 E-value=4.4 Score=38.28 Aligned_cols=93 Identities=19% Similarity=0.187 Sum_probs=62.9
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ke 182 (243)
..|+.++++|+|.|.+-||.|. .+-+++....+++++..+.. ..+.|-+. .|..-++.|+...+ +
T Consensus 148 ~~a~~~~~~Ga~~i~i~DT~G~----------~~P~~v~~~v~~l~~~l~~~---i~ig~H~H-nnlGla~ANslaAi-~ 212 (337)
T PRK08195 148 EQAKLMESYGAQCVYVVDSAGA----------LLPEDVRDRVRALRAALKPD---TQVGFHGH-NNLGLGVANSLAAV-E 212 (337)
T ss_pred HHHHHHHhCCCCEEEeCCCCCC----------CCHHHHHHHHHHHHHhcCCC---CeEEEEeC-CCcchHHHHHHHHH-H
Confidence 4467788899999999999864 67788888888998876311 12345344 68889999999999 5
Q ss_pred hCCCEEEeC----CC---CCchHHHHHHHHHcCCc
Q 026125 183 GGMDAIKLE----GG---SPSRITAARGIVEAGIA 210 (243)
Q Consensus 183 aGAdaVKLE----Gg---~~~~~~~i~~L~~~GIP 210 (243)
+||+-|--- |+ .--.+.++..|.+.|+.
T Consensus 213 aGa~~iD~Sl~GlG~~aGN~~tE~lv~~L~~~g~~ 247 (337)
T PRK08195 213 AGATRIDGSLAGLGAGAGNTPLEVLVAVLDRMGWE 247 (337)
T ss_pred hCCCEEEecChhhcccccCccHHHHHHHHHhcCCC
Confidence 899965321 00 11134455556565654
|
|
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=80.50 E-value=26 Score=31.62 Aligned_cols=103 Identities=25% Similarity=0.165 Sum_probs=58.5
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHc---ccCCCcEEeeCCCCCCc---CCHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR---GAKRPLLVGDLPFGTYE---SSTNQAVDTAVR 178 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~R---ga~~~fvVaDmPfgsY~---~s~e~Av~nA~R 178 (243)
+.-+-+.|+|.+-+-.-.+. ...+++....++|++ ..+.||++-+.|.|-.- .++++ +..+.+
T Consensus 99 ve~A~~~Gad~v~~~~~~g~----------~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~-i~~a~~ 167 (267)
T PRK07226 99 VEEAIKLGADAVSVHVNVGS----------ETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEV-VAHAAR 167 (267)
T ss_pred HHHHHHcCCCEEEEEEecCC----------hhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHH-HHHHHH
Confidence 55566779887643322211 113444545555544 34678777554433210 13444 445556
Q ss_pred HHHHhCCCEEEeCCCCCchHHHHHHHHH-cCCceeeccCCccc
Q 026125 179 ILKEGGMDAIKLEGGSPSRITAARGIVE-AGIAVMGHVGLTPQ 220 (243)
Q Consensus 179 l~keaGAdaVKLEGg~~~~~~~i~~L~~-~GIPV~GHiGLtPQ 220 (243)
...|.|||-||.+-.. ....++.+++ ..|||..==|....
T Consensus 168 ~a~e~GAD~vKt~~~~--~~~~l~~~~~~~~ipV~a~GGi~~~ 208 (267)
T PRK07226 168 VAAELGADIVKTNYTG--DPESFREVVEGCPVPVVIAGGPKTD 208 (267)
T ss_pred HHHHHCCCEEeeCCCC--CHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 6668999999997432 1344677776 47998876666654
|
|
| >cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis | Back alignment and domain information |
|---|
Probab=80.49 E-value=14 Score=31.61 Aligned_cols=76 Identities=12% Similarity=0.093 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-chHHHHHHHHHcCCceee
Q 026125 135 ITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-SRITAARGIVEAGIAVMG 213 (243)
Q Consensus 135 vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-~~~~~i~~L~~~GIPV~G 213 (243)
--+.+++..++...+..+..+++.+.+. . .+++.-.+..-+++ +-++|++-+..... .....++.+.+.||||+.
T Consensus 12 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~--~-~~~~~~~~~i~~l~-~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~ 87 (275)
T cd06320 12 EFWRSLKEGYENEAKKLGVSVDIQAAPS--E-GDQQGQLSIAENMI-NKGYKGLLFSPISDVNLVPAVERAKKKGIPVVN 87 (275)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEccCC--C-CCHHHHHHHHHHHH-HhCCCEEEECCCChHHhHHHHHHHHHCCCeEEE
Confidence 3467778878887777777777766654 2 24443333333344 56899988865432 123446888999999996
Q ss_pred c
Q 026125 214 H 214 (243)
Q Consensus 214 H 214 (243)
.
T Consensus 88 ~ 88 (275)
T cd06320 88 V 88 (275)
T ss_pred E
Confidence 5
|
Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. |
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.49 E-value=18 Score=35.46 Aligned_cols=66 Identities=24% Similarity=0.424 Sum_probs=43.1
Q ss_pred HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE-eeCCCCCCcCCHHHHHHHHHHHH
Q 026125 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-GDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 102 ~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV-aDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
.-.+..+-++|+|+|.+ |+.. |+ +.++.+++ +.+++-.|+.+|+ +|. .|.+++ .+++
T Consensus 155 ~~~v~~lv~aGvDvI~i-D~a~----g~----~~~~~~~v---~~ik~~~p~~~vi~g~V------~T~e~a----~~l~ 212 (404)
T PRK06843 155 IERVEELVKAHVDILVI-DSAH----GH----STRIIELV---KKIKTKYPNLDLIAGNI------VTKEAA----LDLI 212 (404)
T ss_pred HHHHHHHHhcCCCEEEE-ECCC----CC----ChhHHHHH---HHHHhhCCCCcEEEEec------CCHHHH----HHHH
Confidence 46788888999999986 3331 33 23444544 5666666655454 564 356777 5566
Q ss_pred HHhCCCEEEe
Q 026125 181 KEGGMDAIKL 190 (243)
Q Consensus 181 keaGAdaVKL 190 (243)
++|||+|+.
T Consensus 213 -~aGaD~I~v 221 (404)
T PRK06843 213 -SVGADCLKV 221 (404)
T ss_pred -HcCCCEEEE
Confidence 589999996
|
|
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=80.38 E-value=13 Score=35.39 Aligned_cols=114 Identities=11% Similarity=0.002 Sum_probs=64.9
Q ss_pred CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhh----hccCCCCccCCHHHHHH----HHHHHHcccCCCcEEeeCCC
Q 026125 91 GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMV----VHGHDTTLPITLEEMLV----HCRAVARGAKRPLLVGDLPF 162 (243)
Q Consensus 91 g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv----~lG~~dT~~vTldeMi~----h~~aV~Rga~~~fvVaDmPf 162 (243)
..++...+-........+.++|+|.|-+-.+++-. .+| .+.+|.+. ..+..++ .... +...+..
T Consensus 63 ~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~------~~~~~~~~~~~~~i~~ak~-~G~~-v~~~~ed 134 (363)
T TIGR02090 63 NAEICSLARALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLK------KSRDEVLEKAVEAVEYAKE-HGLI-VEFSAED 134 (363)
T ss_pred CcEEEEEcccCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhC------CCHHHHHHHHHHHHHHHHH-cCCE-EEEEEee
Confidence 35666665566666777889999988654443221 222 34444443 3332221 1111 2344333
Q ss_pred CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC-----CchHHHHHHHHHc-CCceeec
Q 026125 163 GTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-----PSRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 163 gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~-----~~~~~~i~~L~~~-GIPV~GH 214 (243)
. +..+++..++.+.++. +.|++.|.|-|-. +....+++.|.++ ++|+--|
T Consensus 135 a-~r~~~~~l~~~~~~~~-~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~~~l~~H 190 (363)
T TIGR02090 135 A-TRTDIDFLIKVFKRAE-EAGADRINIADTVGVLTPQKMEELIKKLKENVKLPISVH 190 (363)
T ss_pred c-CCCCHHHHHHHHHHHH-hCCCCEEEEeCCCCccCHHHHHHHHHHHhcccCceEEEE
Confidence 2 3357788877776665 6999999998873 2344556666553 4665544
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=80.25 E-value=9.3 Score=35.95 Aligned_cols=99 Identities=17% Similarity=0.199 Sum_probs=60.6
Q ss_pred HHHhhhCC--CcEEEE--ecCCHH------HHHHHHHcCCCEEEe-CcchhhhhccCCCCccCCHHHHHHHHHHHHcccC
Q 026125 84 LRQKHKNG--EPITMV--TAYDYP------SAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK 152 (243)
Q Consensus 84 Lr~~kk~g--~~Itml--TAYD~~------sA~iae~AGiDiILV-GDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~ 152 (243)
++++++.- .|+++= .-||-. -|++++++|+|++-| |..- .++|... ..+|. .+.|++..+
T Consensus 127 v~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr---~~~y~~~--ad~~~----I~~vk~~~~ 197 (323)
T COG0042 127 VKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTR---AQGYLGP--ADWDY----IKELKEAVP 197 (323)
T ss_pred HHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccH---HhcCCCc--cCHHH----HHHHHHhCC
Confidence 33444444 466543 336444 699999999999954 4443 3344433 44444 455777777
Q ss_pred CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHH
Q 026125 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRIT 199 (243)
Q Consensus 153 ~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~ 199 (243)
.-+|+++= +- .|++++ .+.++..|+|+|.+=-|....+-
T Consensus 198 ~ipvi~NG---dI-~s~~~a----~~~l~~tg~DgVMigRga~~nP~ 236 (323)
T COG0042 198 SIPVIANG---DI-KSLEDA----KEMLEYTGADGVMIGRGALGNPW 236 (323)
T ss_pred CCeEEeCC---Cc-CCHHHH----HHHHHhhCCCEEEEcHHHccCCc
Confidence 33356542 22 367777 78888999999999666433333
|
|
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=80.15 E-value=28 Score=31.55 Aligned_cols=93 Identities=14% Similarity=0.114 Sum_probs=58.4
Q ss_pred HHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 026125 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (243)
Q Consensus 108 ae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAd 186 (243)
.-++|+|-|++..|.|= -..+|.||=..-.+.+++.+ ++..|++.... .|.+++++.|... ++.|||
T Consensus 28 l~~~Gv~Gi~~~GstGE-------~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~----~s~~~~i~~a~~a-~~~Gad 95 (285)
T TIGR00674 28 QIENGTDAIVVVGTTGE-------SPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGS----NATEEAISLTKFA-EDVGAD 95 (285)
T ss_pred HHHcCCCEEEECccCcc-------cccCCHHHHHHHHHHHHHHhCCCCeEEEeCCC----ccHHHHHHHHHHH-HHcCCC
Confidence 33589999987656543 23578888666666555533 33335655422 3778999988655 479999
Q ss_pred EEEeCCC------CCchHHHHHHHHH-cCCcee
Q 026125 187 AIKLEGG------SPSRITAARGIVE-AGIAVM 212 (243)
Q Consensus 187 aVKLEGg------~~~~~~~i~~L~~-~GIPV~ 212 (243)
+|-+--- .+......+.+.+ .++||+
T Consensus 96 ~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~ 128 (285)
T TIGR00674 96 GFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPII 128 (285)
T ss_pred EEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 9988632 2223333455665 468887
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=80.10 E-value=27 Score=33.18 Aligned_cols=95 Identities=14% Similarity=0.119 Sum_probs=54.4
Q ss_pred HHHHhhhC-CCcEEE---EecCCHHHHHHHHHcCCCEEEeCcchhhh-------------hcc-CCCCccCCHHHHHHHH
Q 026125 83 HLRQKHKN-GEPITM---VTAYDYPSAVHLDSAGIDICLVGDSAAMV-------------VHG-HDTTLPITLEEMLVHC 144 (243)
Q Consensus 83 ~Lr~~kk~-g~~Itm---lTAYD~~sA~iae~AGiDiILVGDSlgmv-------------~lG-~~dT~~vTldeMi~h~ 144 (243)
.+++..+. +-|+.+ -+..+...|+.++++|+|.|-|+..-|.. ... ..+.+.-|.+.+..
T Consensus 177 ~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~-- 254 (352)
T PRK05437 177 NIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLE-- 254 (352)
T ss_pred HHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHH--
Confidence 44444433 567775 23477899999999999999876442211 001 12222223333322
Q ss_pred HHHHcc-cCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 145 RAVARG-AKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 145 ~aV~Rg-a~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
+++. .+.| |+++= +. .|..++ .+.+ ..|||+|.+-
T Consensus 255 --i~~~~~~ip-via~G---GI-~~~~dv----~k~l-~~GAd~v~ig 290 (352)
T PRK05437 255 --ARSLLPDLP-IIASG---GI-RNGLDI----AKAL-ALGADAVGMA 290 (352)
T ss_pred --HHHhcCCCe-EEEEC---CC-CCHHHH----HHHH-HcCCCEEEEh
Confidence 3333 2344 67764 44 366777 4566 4799999884
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 243 | ||||
| 1oy0_A | 281 | The Crystal Structure Of The First Enzyme Of Pantot | 3e-37 | ||
| 3ez4_A | 269 | Crystal Structure Of 3-Methyl-2-Oxobutanoate Hydrox | 1e-28 | ||
| 3vav_A | 275 | Crystal Structure Of 3-Methyl-2-Oxobutanoate Hydrox | 1e-28 | ||
| 1m3u_A | 264 | Crystal Structure Of Ketopantoate Hydroxymethyltran | 2e-25 | ||
| 1o66_A | 275 | Crystal Structure Of 3-Methyl-2-Oxobutanoate Hydrox | 1e-22 |
| >pdb|1OY0|A Chain A, The Crystal Structure Of The First Enzyme Of Pantothenate Biosynthetic Pathway, Ketopantoate Hydroxymethyltransferase From Mycobacterium Tuberculosis Shows A Decameric Assembly And Terminal Helix-Swapping Length = 281 | Back alignment and structure |
|
| >pdb|3EZ4|A Chain A, Crystal Structure Of 3-Methyl-2-Oxobutanoate Hydroxymethyltransferase From Burkholderia Pseudomallei Length = 269 | Back alignment and structure |
|
| >pdb|3VAV|A Chain A, Crystal Structure Of 3-Methyl-2-Oxobutanoate Hydroxymethyltransferase From Burkholderia Thailandensis Length = 275 | Back alignment and structure |
|
| >pdb|1M3U|A Chain A, Crystal Structure Of Ketopantoate Hydroxymethyltransferase Complexed The Product Ketopantoate Length = 264 | Back alignment and structure |
|
| >pdb|1O66|A Chain A, Crystal Structure Of 3-Methyl-2-Oxobutanoate Hydroxymethyltransferase Length = 275 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 Length = 281 | Back alignment and structure |
|---|
Score = 277 bits (712), Expect = 1e-94
Identities = 79/176 (44%), Positives = 110/176 (62%), Gaps = 3/176 (1%)
Query: 61 IPENSVYGGPKP--QNPNQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV 118
+ E ++YG P P ++ HL++ +G M+TAYDY +A D AGI + LV
Sbjct: 1 MSEQTIYGANTPGGSGPRTKIRTHHLQRWKADGHKWAMLTAYDYSTARIFDEAGIPVLLV 60
Query: 119 GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVR 178
GDSAA VV+G+DTT+PI+++E++ R V RGA L+V DLPFG+YE+ A+ A R
Sbjct: 61 GDSAANVVYGYDTTVPISIDELIPLVRGVVRGAPHALVVADLPFGSYEAGPTAALAAATR 120
Query: 179 ILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKN 234
LK+GG A+KLEGG + AGI VM H+G TPQ+++ LGGFR QG+
Sbjct: 121 FLKDGGAHAVKLEGGER-VAEQIACLTAAGIPVMAHIGFTPQSVNTLGGFRVQGRG 175
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} PDB: 3ez4_A Length = 275 | Back alignment and structure |
|---|
Score = 245 bits (627), Expect = 8e-82
Identities = 67/170 (39%), Positives = 96/170 (56%), Gaps = 3/170 (1%)
Query: 72 PQNPNQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDT 131
++ VT+ L+ + GE I M+T YD A LD A +D+ L+GDS V+ G T
Sbjct: 9 QESSRPAVTVPKLQAMREAGEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTT 68
Query: 132 TLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191
TLP+TL+++ H VAR R L+V DLPFGTY + A +AV++++ G +K E
Sbjct: 69 TLPVTLDDIAYHTACVARAQPRALIVADLPFGTYGTP-ADAFASAVKLMR-AGAQMVKFE 126
Query: 192 GGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKV 241
GG R +VE + V HVGLTPQ++ GGF+ QGK A ++
Sbjct: 127 GGEW-LAETVRFLVERAVPVCAHVGLTPQSVHAFGGFKVQGKTEAGAAQL 175
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* Length = 275 | Back alignment and structure |
|---|
Score = 243 bits (622), Expect = 5e-81
Identities = 64/158 (40%), Positives = 91/158 (57%), Gaps = 2/158 (1%)
Query: 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPIT 136
+T+ L++ GE I M+TAY+ A +D AG+++ LVGDS M V G +TLP++
Sbjct: 2 SLITVNTLQKMKAAGEKIAMLTAYESSFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVS 61
Query: 137 LEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS 196
L +M H VARGAK ++V DLPFG Y+ S QA A ++ G +KLEGG
Sbjct: 62 LRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAAAAELMAAGA-HMVKLEGGVWM 120
Query: 197 RITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKN 234
T + GI V H+GLTPQ++ GG++ QG+
Sbjct: 121 AETTEF-LQMRGIPVCAHIGLTPQSVFAFGGYKVQGRG 157
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 Length = 264 | Back alignment and structure |
|---|
Score = 242 bits (620), Expect = 6e-81
Identities = 57/165 (34%), Positives = 97/165 (58%), Gaps = 3/165 (1%)
Query: 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPIT 136
+ T++ L++ + + +TAYDY A G+++ LVGDS M V GHD+TLP+T
Sbjct: 2 KPTTISLLQKYKQEKKRFATITAYDYSFAKLFADEGLNVMLVGDSLGMTVQGHDSTLPVT 61
Query: 137 LEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS 196
+ ++ H AV RGA LL+ DLPF Y + QA + A +++ G + +K+EGG
Sbjct: 62 VADIAYHTAAVRRGAPNCLLLADLPFMAYATP-EQAFENAATVMR-AGANMVKIEGGEW- 118
Query: 197 RITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKV 241
+ + + E + V GH+GLTPQ++++ GG++ QG+ + ++
Sbjct: 119 LVETVQMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRGDEAGDQL 163
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} Length = 298 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 3e-05
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 14/127 (11%)
Query: 68 GGPKPQNPNQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGID-ICLVGDSAAMVV 126
G P+ + + R +P+ +V A +A ++ G + L G A
Sbjct: 3 GNPQLISAGAK-----FRAAVAAEQPLQVVGAITAYAAKMAEAVGFKAVYLSGGGVAANS 57
Query: 127 HGH-DTTLPITLEEMLVHCRAVARGAKRPLLV-GDLPFGTYESSTNQAVDTAVRILKEGG 184
G D + T++++LV + PLLV D +G + N + +R + G
Sbjct: 58 LGIPDLGI-STMDDVLVDANRITNATNLPLLVDIDTGWG---GAFN--IARTIRSFIKAG 111
Query: 185 MDAIKLE 191
+ A+ LE
Sbjct: 112 VGAVHLE 118
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} Length = 255 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 3e-05
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 23/136 (16%)
Query: 82 THLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGH-DTTLPITLEEM 140
T H++G+ + + T +D SA ++ AG +G G D + +
Sbjct: 10 TKFASDHESGKLLVLPTVWDTWSAGLVEEAGFSGLTIGSHPVADATGSSDGEN-MNFADY 68
Query: 141 LVHCRAVARGAKRPLLV-GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE--GGSP-- 195
+ + + P+ V + +G + + + E G I +E S
Sbjct: 69 MAVVKKITSAVSIPVSVDVESGYG-------LSPADLIAQILEAGAVGINVEDVVHSEGK 121
Query: 196 ---------SRITAAR 202
I AAR
Sbjct: 122 RVREAQEHADYIAAAR 137
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} Length = 287 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 6e-05
Identities = 27/125 (21%), Positives = 45/125 (36%), Gaps = 14/125 (11%)
Query: 70 PKPQNPNQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGID-ICLVGDSAAMVVHG 128
R + + +D SA G + L G A++ V
Sbjct: 4 ASHHELRAM-----FRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQVLA 58
Query: 129 H-DTTLPITLEEMLVHCRAVARGAKRPLLV-GDLPFGTYESSTNQAVDTAVRILKEGGMD 186
D L ITL E + + R A+ P++ D +G ++ N V V L+ G+
Sbjct: 59 APDFAL-ITLSEFVEQATRIGRVARLPVIADADHGYG---NALN--VMRTVVELERAGIA 112
Query: 187 AIKLE 191
A+ +E
Sbjct: 113 ALTIE 117
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A Length = 295 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 8e-05
Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 8/111 (7%)
Query: 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGID-ICLVGDSAAMVVHGH-DTTLPITLEEML 141
R P+ +V + A+ AG I L G A G D + TL+++L
Sbjct: 9 FRAALTKENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGI-STLDDVL 67
Query: 142 VHCRAVARGAKRPLLV-GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191
R + PLLV D+ FG S+ V V+ + + G + +E
Sbjct: 68 TDIRRITDVCSLPLLVDADIGFG----SSAFNVARTVKSMIKAGAAGLHIE 114
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 243 | |||
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 100.0 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 100.0 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 100.0 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 100.0 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 100.0 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 100.0 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 100.0 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 100.0 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 100.0 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 100.0 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 99.97 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 99.97 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 99.96 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 99.95 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 99.93 | |
| 3eol_A | 433 | Isocitrate lyase; seattle structural center for in | 99.44 | |
| 1f8m_A | 429 | Isocitrate lyase, ICL; alpha-beta barrel, helix-sw | 99.41 | |
| 3i4e_A | 439 | Isocitrate lyase; structural genomics, seattle str | 99.4 | |
| 3lg3_A | 435 | Isocitrate lyase; conserved, CD, proteomics eviden | 99.39 | |
| 1dqu_A | 538 | Isocitrate lyase; beta barrel; 2.80A {Emericella n | 99.28 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 97.54 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 97.43 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 97.43 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 97.32 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 97.23 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 97.21 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 97.21 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 97.09 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 96.64 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 96.61 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 96.47 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 96.37 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 96.2 | |
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 96.08 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 96.07 | |
| 3i4e_A | 439 | Isocitrate lyase; structural genomics, seattle str | 95.97 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 95.97 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 95.95 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 95.92 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 95.88 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 95.79 | |
| 3lg3_A | 435 | Isocitrate lyase; conserved, CD, proteomics eviden | 95.78 | |
| 3eol_A | 433 | Isocitrate lyase; seattle structural center for in | 95.71 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 95.69 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 95.57 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 95.57 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 95.57 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 95.56 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 95.51 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 95.37 | |
| 1f8m_A | 429 | Isocitrate lyase, ICL; alpha-beta barrel, helix-sw | 95.31 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 95.1 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 95.03 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 94.96 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 94.96 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 94.96 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 94.94 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 94.92 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 94.87 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 94.87 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 94.86 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 94.85 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 94.82 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 94.8 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 94.8 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 94.8 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 94.8 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 94.75 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 94.75 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 94.74 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 94.69 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 94.65 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 94.61 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 94.59 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 94.55 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 94.54 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 94.53 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 94.51 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 94.46 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 94.44 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 94.44 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 94.39 | |
| 2hmc_A | 344 | AGR_L_411P, dihydrodipicolinate synthase; alpha-be | 94.37 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 94.36 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 94.35 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 94.32 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 94.31 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 94.27 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 94.25 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 94.23 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 94.22 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 94.19 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 94.16 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 94.08 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 94.01 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 93.89 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 93.85 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 93.8 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 93.76 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 93.76 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 93.75 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 93.7 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 93.68 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 93.51 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 93.5 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 93.49 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 93.48 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 93.47 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 93.45 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 93.4 | |
| 2nuw_A | 288 | 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a | 93.38 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 93.29 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 93.29 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 93.28 | |
| 3tn4_A | 360 | Phosphotriesterase; lactonase, hydrolase; HET: KCX | 93.27 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 93.24 | |
| 3ij6_A | 312 | Uncharacterized metal-dependent hydrolase; structu | 93.12 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 92.98 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 92.95 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 92.87 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 92.86 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 92.82 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 92.78 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 92.72 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 92.64 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 92.63 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 92.61 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 92.52 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 92.38 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 92.33 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 92.27 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 92.2 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 92.17 | |
| 4djd_D | 323 | C/Fe-SP, corrinoid/iron-sulfur protein small subun | 92.04 | |
| 3nur_A | 357 | Amidohydrolase; TIM barrel; 1.75A {Staphylococcus | 91.99 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 91.96 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 91.96 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 91.96 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 91.82 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 91.71 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 91.69 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 91.67 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 91.66 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 91.63 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 91.55 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 91.51 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 91.36 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 91.27 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 91.1 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 91.1 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 91.09 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 90.96 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 90.93 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 90.91 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 90.88 | |
| 3cjp_A | 272 | Predicted amidohydrolase, dihydroorotase family; s | 90.78 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 90.73 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 90.7 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 90.67 | |
| 4inf_A | 373 | Metal-dependent hydrolase; amidohydrolase, metal b | 90.64 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 90.48 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 90.44 | |
| 2pcq_A | 283 | Putative dihydrodipicolinate synthase; lyase, lysi | 90.42 | |
| 2gwg_A | 350 | 4-oxalomesaconate hydratase; TIM-barrel like prote | 90.4 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 90.34 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 90.31 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 90.06 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 89.9 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 89.85 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 89.82 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 89.8 | |
| 3irs_A | 291 | Uncharacterized protein BB4693; structural genomic | 89.75 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 89.67 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 89.56 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 89.5 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 89.47 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 89.4 | |
| 2wm1_A | 336 | 2-amino-3-carboxymuconate-6-semialdehyde decarboxy | 89.38 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 89.33 | |
| 2nuw_A | 288 | 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a | 89.23 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 89.21 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 89.11 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 89.01 | |
| 2dvt_A | 327 | Thermophilic reversible gamma-resorcylate decarbo; | 89.0 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 88.91 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 88.84 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 88.69 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 88.63 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 88.53 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 88.37 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 88.32 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 88.24 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 88.23 | |
| 2h9a_B | 310 | CO dehydrogenase/acetyl-COA synthase, iron- sulfur | 88.1 | |
| 1p1x_A | 260 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 88.09 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 88.08 | |
| 3bjs_A | 428 | Mandelate racemase/muconate lactonizing enzyme; en | 88.03 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 88.02 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 87.99 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 87.95 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 87.93 | |
| 2f6k_A | 307 | Metal-dependent hydrolase; metal dependent hydroly | 87.85 | |
| 3dxi_A | 320 | Putative aldolase; TIM barrel, 11107N, PSI2, NYSGX | 87.83 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 87.82 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 87.77 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 87.73 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 87.68 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 87.67 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 87.33 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 87.23 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 87.2 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 87.1 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 87.01 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 86.95 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 86.92 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 86.91 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 86.88 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 86.82 | |
| 4dpp_A | 360 | DHDPS 2, dihydrodipicolinate synthase 2, chloropla | 86.67 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 86.6 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 86.58 | |
| 2hxt_A | 441 | L-fuconate dehydratase; enolase superfamily, D-ery | 86.55 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 86.51 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 86.5 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 86.46 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 86.24 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 86.09 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 86.07 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 86.06 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 85.81 | |
| 3w01_A | 235 | Heptaprenylglyceryl phosphate synthase; biosynthes | 85.78 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 85.72 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 85.6 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 85.59 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 85.52 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 85.48 | |
| 1lt8_A | 406 | Betaine-homocysteine methyltransferase; homocystei | 85.44 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 85.38 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 85.37 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 85.31 | |
| 1v5x_A | 203 | PRA isomerase, phosphoribosylanthranilate isomeras | 85.15 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 85.06 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 84.99 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 84.8 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 84.7 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 84.61 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 84.58 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 84.43 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 84.43 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 84.31 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 84.25 | |
| 4dpp_A | 360 | DHDPS 2, dihydrodipicolinate synthase 2, chloropla | 84.18 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 84.13 | |
| 2vp8_A | 318 | Dihydropteroate synthase 2; RV1207 transferase, fo | 84.09 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 84.04 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 84.03 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 83.96 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 83.93 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 83.91 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 83.89 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 83.78 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 83.75 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 83.72 | |
| 1eye_A | 280 | DHPS 1, dihydropteroate synthase I; alpha-beta bar | 83.54 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 83.38 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 83.19 | |
| 3tr9_A | 314 | Dihydropteroate synthase; biosynthesis of cofactor | 83.1 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 83.08 | |
| 1f6y_A | 262 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 83.06 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 83.03 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 83.0 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 82.94 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 82.81 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 82.75 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 82.74 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 82.73 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 82.71 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 82.61 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 82.56 | |
| 2hbv_A | 334 | 2-amino-3-carboxymuconate 6-semialdehyde decarbox; | 82.54 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 82.53 | |
| 4hb7_A | 270 | Dihydropteroate synthase; transferase; 1.95A {Stap | 82.53 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 82.47 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 82.43 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 82.37 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 82.23 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 81.91 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 81.86 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 81.63 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 81.6 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 81.51 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 81.49 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 81.45 | |
| 1vs1_A | 276 | 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha | 81.43 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 81.3 | |
| 2y5s_A | 294 | DHPS, dihydropteroate synthase; transferase, folat | 81.21 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 80.81 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 80.8 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 80.74 | |
| 1tx2_A | 297 | DHPS, dihydropteroate synthase; folate biosynthesi | 80.73 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 80.68 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 80.66 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 80.47 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 80.41 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 80.37 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 80.27 | |
| 3h75_A | 350 | Periplasmic sugar-binding domain protein; protein | 80.08 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 80.06 |
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-60 Score=430.44 Aligned_cols=179 Identities=44% Similarity=0.735 Sum_probs=143.7
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCc
Q 026125 54 LVRCMSNIPENSVYGGPKPQNPNQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTL 133 (243)
Q Consensus 54 ~~r~~s~~~~~~~~~~~~~~~~~~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~ 133 (243)
+.|+++++|. |+. +++++|+.+|+++|++|+||+|+||||++||+++|++|||+||||||++|+++|||||+
T Consensus 4 ~~~~~~~~~~----~~~----~~~~~t~~~lr~~k~~g~~i~~~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~ 75 (281)
T 1oy0_A 4 QTIYGANTPG----GSG----PRTKIRTHHLQRWKADGHKWAMLTAYDYSTARIFDEAGIPVLLVGDSAANVVYGYDTTV 75 (281)
T ss_dssp ----------------------CCCCCHHHHHHHHHHTCCEEEEECCSHHHHHHHHTTTCCEEEECTTHHHHTTCCSSSS
T ss_pred ccccCCCCCC----CCC----CCCCcCHHHHHHHHhCCCcEEEEeCcCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCC
Confidence 4567777664 332 24679999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceee
Q 026125 134 PITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMG 213 (243)
Q Consensus 134 ~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~G 213 (243)
++|+|||++|+++|+|+++++||++|||||||+.|++++++||.|+++|+||++||||||.+.. +.|++|+++||||||
T Consensus 76 ~vTldemi~h~~aV~r~~~~~~vvaD~pfgsy~~s~~~a~~na~rl~~eaGa~aVklEdg~e~~-~~I~al~~agIpV~g 154 (281)
T 1oy0_A 76 PISIDELIPLVRGVVRGAPHALVVADLPFGSYEAGPTAALAAATRFLKDGGAHAVKLEGGERVA-EQIACLTAAGIPVMA 154 (281)
T ss_dssp SCCGGGTHHHHHHHHHHCTTSEEEEECCTTSSTTCHHHHHHHHHHHHHTTCCSEEEEEBSGGGH-HHHHHHHHHTCCEEE
T ss_pred CCCHHHHHHHHHHHHhcCCCCeEEEECCCCcccCCHHHHHHHHHHHHHHhCCeEEEECCcHHHH-HHHHHHHHCCCCEEe
Confidence 9999999999999999999999999999999988999999999999999999999999998765 558999999999999
Q ss_pred ccCCcccccccccCccccccCHHhhcccc
Q 026125 214 HVGLTPQAISVLGGFRPQGKNVTSAVKVF 242 (243)
Q Consensus 214 HiGLtPQ~~~~~GGykvqGkt~~~A~~ll 242 (243)
|||||||+++++||||+||||. +|++++
T Consensus 155 HiGLtPqsv~~~ggf~v~grt~-~a~~~i 182 (281)
T 1oy0_A 155 HIGFTPQSVNTLGGFRVQGRGD-AAEQTI 182 (281)
T ss_dssp EEECCC--------------CH-HHHHHH
T ss_pred eecCCcceecccCCeEEEeCcH-HHHHHH
Confidence 9999999999999999999998 776654
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-59 Score=419.30 Aligned_cols=163 Identities=35% Similarity=0.662 Sum_probs=155.7
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
+++|+.+|+++|++|+||+|+||||++||+++|++|||+||||||++|+++|||||+++|+|||++|+++|+|+++++||
T Consensus 2 ~~~t~~~lr~~k~~g~~i~~~tayD~~sA~l~e~aG~d~ilvGdsl~~~~lG~~dt~~vtldemi~h~~aV~r~~~~~~v 81 (264)
T 1m3u_A 2 KPTTISLLQKYKQEKKRFATITAYDYSFAKLFADEGLNVMLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLL 81 (264)
T ss_dssp -CCCHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCTTSEE
T ss_pred CCcCHHHHHHHHHCCCcEEEEeCcCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhhCCCCcE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccCCcccccccccCccccccCHH
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVT 236 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiGLtPQ~~~~~GGykvqGkt~~ 236 (243)
++|||||||+ |++++++||.|+++ +||++||||||.+.. +.|++|+++|||||||||||||++|++||||+||||.+
T Consensus 82 vaD~pfgsy~-~~~~a~~~a~rl~k-aGa~aVklEgg~e~~-~~I~al~~agipV~gHiGLtPq~v~~~ggf~v~grt~~ 158 (264)
T 1m3u_A 82 LADLPFMAYA-TPEQAFENAATVMR-AGANMVKIEGGEWLV-ETVQMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRGDE 158 (264)
T ss_dssp EEECCTTSSS-SHHHHHHHHHHHHH-TTCSEEECCCSGGGH-HHHHHHHHTTCCEEEEEESCGGGHHHHTSSCCCCCSHH
T ss_pred EEECCCCCcC-CHHHHHHHHHHHHH-cCCCEEEECCcHHHH-HHHHHHHHCCCCeEeeecCCceeecccCCeEEEeCCHH
Confidence 9999999998 99999999999997 999999999998765 55899999999999999999999999999999999998
Q ss_pred hhcccc
Q 026125 237 SAVKVF 242 (243)
Q Consensus 237 ~A~~ll 242 (243)
+|++++
T Consensus 159 ~a~~~i 164 (264)
T 1m3u_A 159 AGDQLL 164 (264)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887764
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-58 Score=417.03 Aligned_cols=163 Identities=39% Similarity=0.683 Sum_probs=144.6
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
+++|+.+|+++|++++||+|+||||++||+++|++|||+||||||++|+++|||||+++|+|||++|+++|+|+++++||
T Consensus 2 ~~~t~~~lr~~k~~g~~i~~~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~v 81 (275)
T 1o66_A 2 SLITVNTLQKMKAAGEKIAMLTAYESSFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMI 81 (275)
T ss_dssp -CCCHHHHHHHHHHTCCEEEEECCSHHHHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEE
T ss_pred CCcCHHHHHHHHhCCCcEEEEeCcCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhCCCCeE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccCCcccccccccCccccccCHH
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVT 236 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiGLtPQ~~~~~GGykvqGkt~~ 236 (243)
++|||||||+.|++++++||.|+++ +||++||||||.+.. +.|++|+++|||||||||||||+++++||||+|||| +
T Consensus 82 vaD~pfgsy~~s~~~a~~na~rl~k-aGa~aVklEdg~e~~-~~I~al~~agIpV~gHiGLtPQs~~~~ggf~v~grt-~ 158 (275)
T 1o66_A 82 VSDLPFGAYQQSKEQAFAAAAELMA-AGAHMVKLEGGVWMA-ETTEFLQMRGIPVCAHIGLTPQSVFAFGGYKVQGRG-G 158 (275)
T ss_dssp EEECCTTSSSSCHHHHHHHHHHHHH-TTCSEEEEECSGGGH-HHHHHHHHTTCCEEEEEESCGGGTTC------------
T ss_pred EEECCCCCccCCHHHHHHHHHHHHH-cCCcEEEECCcHHHH-HHHHHHHHcCCCeEeeeccCceeecccCCeEEEeCh-H
Confidence 9999999998899999999999997 999999999998765 558999999999999999999999999999999999 7
Q ss_pred hhcccc
Q 026125 237 SAVKVF 242 (243)
Q Consensus 237 ~A~~ll 242 (243)
+|++++
T Consensus 159 ~a~~~i 164 (275)
T 1o66_A 159 KAQALL 164 (275)
T ss_dssp CHHHHH
T ss_pred HHHHHH
Confidence 777654
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-57 Score=411.36 Aligned_cols=165 Identities=41% Similarity=0.694 Sum_probs=154.2
Q ss_pred CCCCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCC
Q 026125 75 PNQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRP 154 (243)
Q Consensus 75 ~~~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~ 154 (243)
++|++|+.+|+++|++|+||+|+||||++||+++|++|||+||||||++|++||||||+++|+|||++|+++|+|+++++
T Consensus 12 ~~~~~t~~~lr~~~~~g~~i~m~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vtldem~~h~~aV~r~~~~~ 91 (275)
T 3vav_A 12 SRPAVTVPKLQAMREAGEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRA 91 (275)
T ss_dssp -CCCCCHHHHHHHHHHTCCEEEEECCSHHHHHHHHHTTCSEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHTCCSS
T ss_pred ccCCcCHHHHHHHHHCCCcEEEEeCcCHHHHHHHHHcCCCEEEECcHHHHHHcCCCCCCccCHHHHHHHHHHHHhcCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccCCcccccccccCccccccC
Q 026125 155 LLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKN 234 (243)
Q Consensus 155 fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiGLtPQ~~~~~GGykvqGkt 234 (243)
||++||||||| .|++++++||.|++++ ||++||||||.+. .++|++|+++|||||||||||||+++++||||+||||
T Consensus 92 ~vvaD~pfgsY-~s~~~a~~~a~rl~ka-Ga~aVklEdg~~~-~~~i~~l~~~GIpv~gHlgltPq~~~~~gg~~vqgrt 168 (275)
T 3vav_A 92 LIVADLPFGTY-GTPADAFASAVKLMRA-GAQMVKFEGGEWL-AETVRFLVERAVPVCAHVGLTPQSVHAFGGFKVQGKT 168 (275)
T ss_dssp EEEEECCTTSC-SSHHHHHHHHHHHHHT-TCSEEEEECCGGG-HHHHHHHHHTTCCEEEEEESCGGGHHHHC---CCCCS
T ss_pred CEEEecCCCCC-CCHHHHHHHHHHHHHc-CCCEEEECCchhH-HHHHHHHHHCCCCEEEecCCCceEEeccCCeEEEcCC
Confidence 99999999999 7999999999999985 9999999999865 4558999999999999999999999999999999999
Q ss_pred HHhhcccc
Q 026125 235 VTSAVKVF 242 (243)
Q Consensus 235 ~~~A~~ll 242 (243)
.++|++++
T Consensus 169 ~~~a~~~i 176 (275)
T 3vav_A 169 EAGAAQLL 176 (275)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887764
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-36 Score=272.27 Aligned_cols=142 Identities=18% Similarity=0.220 Sum_probs=132.3
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcc-hhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDS-AAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDS-lgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
-.+|++++++++||+|+||||++||++++++|||+|++||| ++|+++|||||+++|+|||++|+++|+|+++.| |++|
T Consensus 6 ~~~lr~l~~~~~~i~~~~a~D~~sA~~~~~aG~~ai~vs~~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~P-viaD 84 (295)
T 1xg4_A 6 GKAFRAALTKENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLP-LLVD 84 (295)
T ss_dssp HHHHHHHHHHSSSEEEEECSSHHHHHHHHHTTCSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHCCSC-EEEE
T ss_pred HHHHHHHHhCCCcEEEecCcCHHHHHHHHHcCCCEEEECchHhhhhhcCCCCCCCCCHHHHHHHHHHHHhhCCCC-EEec
Confidence 46799999999999999999999999999999999999999 999999999999999999999999999999987 8999
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccC---Ccccccc-----------cc
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVG---LTPQAIS-----------VL 225 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiG---LtPQ~~~-----------~~ 225 (243)
|||| |+.+++++.+|+.+++ ++||++|||||+. ++|+|||+| |+||... ..
T Consensus 85 ~d~G-yg~~~~~~~~~v~~l~-~aGa~gv~iEd~~-------------~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~ 149 (295)
T 1xg4_A 85 ADIG-FGSSAFNVARTVKSMI-KAGAAGLHIEDQV-------------GAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTD 149 (295)
T ss_dssp CTTC-SSSSHHHHHHHHHHHH-HHTCSEEEEECBC-------------SSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSS
T ss_pred CCcc-cCCCHHHHHHHHHHHH-HcCCeEEEECCCC-------------CCcccCCCCCCccCCHHHHHHHHHHHHHhccC
Confidence 9998 9779999999999999 5999999999994 699999999 9999876 26
Q ss_pred cCccccccCHHhh
Q 026125 226 GGFRPQGKNVTSA 238 (243)
Q Consensus 226 GGykvqGkt~~~A 238 (243)
+||+++|||...+
T Consensus 150 ~~~~i~aRtda~~ 162 (295)
T 1xg4_A 150 PDFVIMARTDALA 162 (295)
T ss_dssp TTSEEEEEECCHH
T ss_pred CCcEEEEecHHhh
Confidence 8999999997544
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-36 Score=270.80 Aligned_cols=139 Identities=16% Similarity=0.081 Sum_probs=124.7
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCc-chhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGD-SAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGD-Slgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
-.+|++++++++||+|+||||++||+++|++|||+|++|| |++|+ +|||||+++|+|||++|+++|+|+++.| |++|
T Consensus 4 ~~~lr~l~~~~~~i~~~~a~D~~sA~~~~~aG~~ai~vs~~~~a~~-~G~pD~~~vt~~em~~~~~~I~~~~~~P-viaD 81 (290)
T 2hjp_A 4 NQALRAALDSGRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSAS-YAVPDANILSMSTHLEMMRAIASTVSIP-LIAD 81 (290)
T ss_dssp HHHHHHHHHHCCCEEEEECSSHHHHHHHHHHTCSEEEECHHHHHHH-TTSCTTTCSCHHHHHHHHHHHHTTCSSC-EEEE
T ss_pred HHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHh-CCCCCCCCCCHHHHHHHHHHHHhcCCCC-EEEE
Confidence 3579999999999999999999999999999999999997 79999 9999999999999999999999999999 8999
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccC-----Cccccc-----------c
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVG-----LTPQAI-----------S 223 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiG-----LtPQ~~-----------~ 223 (243)
|||| |+ +++++.+|+.++++ +||++|||||+.. +|+|||+| |+||.. .
T Consensus 82 ~d~G-yg-~~~~~~~~v~~l~~-aGa~gv~iED~~~-------------~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~ 145 (290)
T 2hjp_A 82 IDTG-FG-NAVNVHYVVPQYEA-AGASAIVMEDKTF-------------PKDTSLRTDGRQELVRIEEFQGKIAAATAAR 145 (290)
T ss_dssp CTTT-TS-SHHHHHHHHHHHHH-HTCSEEEEECBCS-------------SCCC-------CCBCCHHHHHHHHHHHHHHC
T ss_pred CCCC-CC-CHHHHHHHHHHHHH-hCCeEEEEcCCCC-------------CccccccccCCCcccCHHHHHHHHHHHHHhc
Confidence 9998 97 99999999999995 9999999999953 89999999 999972 3
Q ss_pred cccCccccccCHHh
Q 026125 224 VLGGFRPQGKNVTS 237 (243)
Q Consensus 224 ~~GGykvqGkt~~~ 237 (243)
..|||++||||...
T Consensus 146 ~~~~~~i~aRtda~ 159 (290)
T 2hjp_A 146 ADRDFVVIARVEAL 159 (290)
T ss_dssp SSTTSEEEEEECTT
T ss_pred ccCCcEEEEeehHh
Confidence 35999999999654
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=272.70 Aligned_cols=141 Identities=17% Similarity=0.140 Sum_probs=131.2
Q ss_pred HHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCc-chhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 82 THLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGD-SAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 82 ~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGD-Slgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
.+|++++++++||+|+||||+.||+++|++|||+|++|| |++|+++|||||+++|+|||++|+++|+|++++.+|++||
T Consensus 29 ~~lr~l~~~~~~i~~~~ayD~~sA~i~e~aGfdai~vs~~~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~~~PviaD~ 108 (318)
T 1zlp_A 29 TTMHRLIEEHGSVLMPGVQDALSAAVVEKTGFHAAFVSGYSVSAAMLGLPDFGLLTTTEVVEATRRITAAAPNLCVVVDG 108 (318)
T ss_dssp CHHHHHHHHSSSEEEEEECSHHHHHHHHHTTCSEEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHHHSSSSEEEEEC
T ss_pred HHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEECcHHHhhHhcCCCCCCCCCHHHHHHHHHHHHhhccCCCEEEeC
Confidence 359999999999999999999999999999999999999 6999999999999999999999999999999888899999
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccC---Cccccccc-----------cc
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVG---LTPQAISV-----------LG 226 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiG---LtPQ~~~~-----------~G 226 (243)
||| |+ +++++.+|+.++++ +||++|||||+.. +|+|||+| |+||+... .|
T Consensus 109 d~G-yg-~~~~v~~tv~~l~~-aGaagv~iED~~~-------------~k~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~ 172 (318)
T 1zlp_A 109 DTG-GG-GPLNVQRFIRELIS-AGAKGVFLEDQVW-------------PKKCGHMRGKAVVPAEEHALKIAAAREAIGDS 172 (318)
T ss_dssp TTC-SS-SHHHHHHHHHHHHH-TTCCEEEEECBCS-------------SCCCSSSSCCCBCCHHHHHHHHHHHHHHHTTS
T ss_pred CCC-CC-CHHHHHHHHHHHHH-cCCcEEEECCCCC-------------CccccCCCCCccCCHHHHHHHHHHHHHhcccC
Confidence 998 97 99999999999995 9999999999953 89999999 99998762 48
Q ss_pred CccccccCHHhh
Q 026125 227 GFRPQGKNVTSA 238 (243)
Q Consensus 227 GykvqGkt~~~A 238 (243)
||+++|||...+
T Consensus 173 ~~~I~ARtda~a 184 (318)
T 1zlp_A 173 DFFLVARTDARA 184 (318)
T ss_dssp CCEEEEEECTHH
T ss_pred CcEEEEeeHHhh
Confidence 999999997655
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=263.87 Aligned_cols=139 Identities=15% Similarity=0.048 Sum_probs=111.2
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeC-cchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVG-DSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVG-DSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
-.+|++++++++||+++||||+.||++++++|||+|++| ||+++ .+|+|||+++|+|||++|+++|+|+++.| |++|
T Consensus 8 ~~~lr~l~~~~~~i~~~~a~D~~sA~~~~~aG~~ai~vsg~~~a~-~lG~pD~~~vt~~em~~~~~~I~~~~~~P-viaD 85 (295)
T 1s2w_A 8 TTQLKQMLNSKDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSA-QLGVRDSNEASWTQVVEVLEFMSDASDVP-ILLD 85 (295)
T ss_dssp HHHHHHHHHSSSCEEEEEECSHHHHHHHHHHTCSCEEECCHHHHH-TC---------CHHHHHHHHHHHHTCSSC-EEEE
T ss_pred HHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeChHHHHH-hCCCCCCCCCCHHHHHHHHHHHHhcCCCC-EEec
Confidence 457999999999999999999999999999999999988 58998 69999999999999999999999999999 9999
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccC-----Ccccccc-----------
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVG-----LTPQAIS----------- 223 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiG-----LtPQ~~~----------- 223 (243)
+||| |+ +++++++|+.+++ ++||++|||||+.+ +|+|||+| |+||+..
T Consensus 86 ~d~G-yg-~~~~v~~~v~~l~-~aGaagv~iED~~~-------------~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~ 149 (295)
T 1s2w_A 86 ADTG-YG-NFNNARRLVRKLE-DRGVAGACLEDKLF-------------PKTNSLHDGRAQPLADIEEFALKIKACKDSQ 149 (295)
T ss_dssp CCSS-CS-SHHHHHHHHHHHH-HTTCCEEEEECBCC---------------------CTTCCBCCHHHHHHHHHHHHHHC
T ss_pred CCCC-CC-CHHHHHHHHHHHH-HcCCcEEEECCCCC-------------CccccccCCCCCcccCHHHHHHHHHHHHHhc
Confidence 9998 96 8999999999999 69999999999963 89999999 7999833
Q ss_pred cccCccccccCHHh
Q 026125 224 VLGGFRPQGKNVTS 237 (243)
Q Consensus 224 ~~GGykvqGkt~~~ 237 (243)
..|||+++|||...
T Consensus 150 ~~~~~~i~aRtda~ 163 (295)
T 1s2w_A 150 TDPDFCIVARVEAF 163 (295)
T ss_dssp SSTTCEEEEEECTT
T ss_pred ccCCcEEEEeehHH
Confidence 36899999999654
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-34 Score=254.22 Aligned_cols=130 Identities=19% Similarity=0.278 Sum_probs=119.0
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCc-chhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGD-SAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGD-Slgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
-.+|+++|++++||+|+||||++||+++|++|||+|+||| |++| ++|||||+++|+|||++|+++|+|+++. +|++|
T Consensus 9 ~~~lr~l~~~~~~i~~~~ayD~~sA~~~~~aG~dai~vg~~s~a~-~~G~pD~~~vt~~em~~~~~~I~r~~~~-pviaD 86 (255)
T 2qiw_A 9 ATKFASDHESGKLLVLPTVWDTWSAGLVEEAGFSGLTIGSHPVAD-ATGSSDGENMNFADYMAVVKKITSAVSI-PVSVD 86 (255)
T ss_dssp HHHHHHHHHTCCCEECCEESSHHHHHHHHHTTCSCEEECHHHHHH-HTTCCTTTCSCHHHHHHHHHHHHHHCSS-CEEEE
T ss_pred HHHHHHHHhCCCcEEEecCcCHHHHHHHHHcCCCEEEEChHHHHH-hCCCCCCCCcCHHHHHHHHHHHHhcCCC-CEEec
Confidence 3579999999999999999999999999999999999997 8998 7999999999999999999999999985 59999
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC----------CchHHHHHHHHHc----CCc--eeeccCC
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS----------PSRITAARGIVEA----GIA--VMGHVGL 217 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~----------~~~~~~i~~L~~~----GIP--V~GHiGL 217 (243)
|||| |+.++ ++|+.++++ +||++|||||+. ++....|++++++ ||| |+||.+.
T Consensus 87 ~~~G-yg~~~---~~~~~~l~~-aGa~gv~iEd~~~~~~k~l~~~~e~~~~I~a~~~a~~~~g~~~~v~aRtd~ 155 (255)
T 2qiw_A 87 VESG-YGLSP---ADLIAQILE-AGAVGINVEDVVHSEGKRVREAQEHADYIAAARQAADVAGVDVVINGRTDA 155 (255)
T ss_dssp CTTC-TTCCH---HHHHHHHHH-TTCCEEEECSEEGGGTTEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECH
T ss_pred cCCC-cCcHH---HHHHHHHHH-cCCcEEEECCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCeEEEEEech
Confidence 9998 98777 999999995 999999999995 1245568999999 999 9999997
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=256.62 Aligned_cols=137 Identities=20% Similarity=0.268 Sum_probs=127.2
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcc-hhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDS-AAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDS-lgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
-.+|++++++++||+|+||||++||+++|++|||+|++||| ++|+++|||||+++|+|||++|+++|+|+++.| |++|
T Consensus 10 ~~~lr~l~~~~~~i~~~~a~D~~sA~i~e~aGf~ai~vs~s~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~~P-viaD 88 (287)
T 3b8i_A 10 RAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVARLP-VIAD 88 (287)
T ss_dssp HHHHHHHHHSSCCEECEECCSHHHHHHHHHTTCSCEEECHHHHHHHHHSCCSSSCSCHHHHHHHHHHHHTTCSSC-EEEE
T ss_pred HHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCCC-EEEE
Confidence 45799999999999999999999999999999999999999 999999999999999999999999999999999 8999
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC---------------chHHHHHHHHHcCCceeeccCCccccccc
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP---------------SRITAARGIVEAGIAVMGHVGLTPQAISV 224 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~---------------~~~~~i~~L~~~GIPV~GHiGLtPQ~~~~ 224 (243)
|||| |+ +++++++|+.++++ +||++|||||+.. +....|+++++++|
T Consensus 89 ~d~G-yg-~~~~~~~~v~~l~~-aGa~gv~iED~~~pKrcgh~~gkl~~~~e~~~~I~aa~~a~~--------------- 150 (287)
T 3b8i_A 89 ADHG-YG-NALNVMRTVVELER-AGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARV--------------- 150 (287)
T ss_dssp CTTC-SS-SHHHHHHHHHHHHH-HTCSEEEEECBCCSCCTTTCTTCBCCHHHHHHHHHHHHHHCC---------------
T ss_pred CCCC-CC-CHHHHHHHHHHHHH-hCCeEEEEcCCCCccccCCCCCCccCHHHHHHHHHHHHHcCC---------------
Confidence 9998 96 99999999999995 9999999999962 24556899999999
Q ss_pred ccCccccccCHH
Q 026125 225 LGGFRPQGKNVT 236 (243)
Q Consensus 225 ~GGykvqGkt~~ 236 (243)
.+||++||||..
T Consensus 151 ~~~~~i~aRtda 162 (287)
T 3b8i_A 151 DPALTIIARTNA 162 (287)
T ss_dssp STTSEEEEEEET
T ss_pred CCCcEEEEechh
Confidence 279999999976
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-31 Score=238.29 Aligned_cols=132 Identities=20% Similarity=0.277 Sum_probs=119.6
Q ss_pred HHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeC-cchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 82 THLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVG-DSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 82 ~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVG-DSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
.+|+++|++ + |+|+||||++||++++++|||+|++| ||+++ .+|||||+++|+|||++|+++|+|+++.| |++|+
T Consensus 8 ~~lr~l~~~-~-i~~~~a~D~~sA~~~~~aG~~ai~vsg~s~a~-~~G~pD~~~vt~~em~~~~~~I~~~~~~p-viaD~ 83 (275)
T 2ze3_A 8 RSFHALHQT-G-FLLPNAWDVASARLLEAAGFTAIGTTSAGIAH-ARGRTDGQTLTRDEMGREVEAIVRAVAIP-VNADI 83 (275)
T ss_dssp HHHHHHHHH-C-EEECEESSHHHHHHHHHHTCSCEEECHHHHHH-HSCCCSSSSSCHHHHHHHHHHHHHHCSSC-EEEEC
T ss_pred HHHHHHhhC-C-eeEecccCHHHHHHHHHcCCCEEEECcHHHHH-hCCCCCCCCCCHHHHHHHHHHHHhhcCCC-EEeec
Confidence 568998875 5 99999999999999999999999998 68998 79999999999999999999999999965 99999
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC----------chHHHHHHHHHc----CCceeeccCCccccccccc
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP----------SRITAARGIVEA----GIAVMGHVGLTPQAISVLG 226 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~----------~~~~~i~~L~~~----GIPV~GHiGLtPQ~~~~~G 226 (243)
||| |+.+++++.+|+.++++ +||++|||||+.. +....|++++++ |||
T Consensus 84 d~G-yg~~~~~~~~~v~~l~~-aGaagv~iED~~~~~~k~l~~~~e~~~~I~aa~~a~~~~g~~---------------- 145 (275)
T 2ze3_A 84 EAG-YGHAPEDVRRTVEHFAA-LGVAGVNLEDATGLTPTELYDLDSQLRRIEAARAAIDASGVP---------------- 145 (275)
T ss_dssp TTC-SSSSHHHHHHHHHHHHH-TTCSEEEEECBCSSSSSCBCCHHHHHHHHHHHHHHHHHHTSC----------------
T ss_pred CCC-CCCCHHHHHHHHHHHHH-cCCcEEEECCCcCCCCCccCCHHHHHHHHHHHHHhHhhcCCC----------------
Confidence 998 98799999999999995 9999999999972 234558999999 999
Q ss_pred CccccccCHH
Q 026125 227 GFRPQGKNVT 236 (243)
Q Consensus 227 GykvqGkt~~ 236 (243)
|+++|||..
T Consensus 146 -~~i~aRtda 154 (275)
T 2ze3_A 146 -VFLNARTDT 154 (275)
T ss_dssp -CEEEEECCT
T ss_pred -eEEEEechh
Confidence 899999865
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=99.97 E-value=9.3e-31 Score=239.14 Aligned_cols=140 Identities=17% Similarity=0.244 Sum_probs=126.3
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCc-chhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGD-SAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGD-Slgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
-.+|++++++++||+++||||+.||+++|++|||+|++|| |++|+++|+|||+++|+|||++|+++|+|+++.| |++|
T Consensus 11 ~~~lr~l~~~~~~i~~~~a~D~~sA~l~e~aGf~ai~vs~~s~a~~~~G~pD~~~vt~~em~~~~~~I~r~~~~P-viaD 89 (298)
T 3eoo_A 11 GAKFRAAVAAEQPLQVVGAITAYAAKMAEAVGFKAVYLSGGGVAANSLGIPDLGISTMDDVLVDANRITNATNLP-LLVD 89 (298)
T ss_dssp HHHHHHHHHHSSSEEEEECSSHHHHHHHHHHTCSCEEECHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHCCSC-EEEE
T ss_pred HHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEECcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhcCCe-EEEE
Confidence 3579999999999999999999999999999999999999 9999999999999999999999999999999877 8999
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccC---Ccccc--cccc---------
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVG---LTPQA--ISVL--------- 225 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiG---LtPQ~--~~~~--------- 225 (243)
+||| |+ +++++.+|+.+++ ++||++|||||+.. .+.|||++ |+|+. +..+
T Consensus 90 ~d~G-yg-~~~~v~~~v~~l~-~aGaagv~iEDq~~-------------~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~ 153 (298)
T 3eoo_A 90 IDTG-WG-GAFNIARTIRSFI-KAGVGAVHLEDQVG-------------QKRCGHRPGKECVPAGEMVDRIKAAVDARTD 153 (298)
T ss_dssp CTTC-SS-SHHHHHHHHHHHH-HTTCSEEEEECBCC-------------CCCTTCCCCCCBCCHHHHHHHHHHHHHHCSS
T ss_pred CCCC-CC-CHHHHHHHHHHHH-HhCCeEEEECCCCC-------------CcccCCCCCCeecCHHHHHHHHHHHHHhccC
Confidence 9995 95 9999999998888 59999999999842 67899998 99987 4444
Q ss_pred cCccccccCHHh
Q 026125 226 GGFRPQGKNVTS 237 (243)
Q Consensus 226 GGykvqGkt~~~ 237 (243)
++|.+.+||...
T Consensus 154 ~~~~I~ARTDa~ 165 (298)
T 3eoo_A 154 ETFVIMARTDAA 165 (298)
T ss_dssp TTSEEEEEECTH
T ss_pred CCeEEEEeehhh
Confidence 679999988543
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-28 Score=225.03 Aligned_cols=141 Identities=19% Similarity=0.205 Sum_probs=117.3
Q ss_pred CHHHHHHhhhC-CCcEEEEecCCHHHHHHHHHcCCCEEEe-CcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcE
Q 026125 80 TLTHLRQKHKN-GEPITMVTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLL 156 (243)
Q Consensus 80 tv~~Lr~~kk~-g~~ItmlTAYD~~sA~iae~AGiDiILV-GDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fv 156 (243)
.-.+||+++++ +++|+|+||||+.||++++++|||+|++ |||++|+++|+||++++|++||++|+++|+|+++ +.+|
T Consensus 12 ~a~~lr~ll~~~~~~i~~~~a~D~~sA~l~e~aGf~ai~vsG~~~a~s~~G~pD~~~vt~~em~~~~~~i~r~~~~~~Pv 91 (307)
T 3lye_A 12 GAKKLRHLLENTDELIVCPGVYDGLSARTAMELGFKSLYMTGAGTTASRLGQPDLAIAQLHDMRDNADMIANLDPFGPPL 91 (307)
T ss_dssp HHHHHHHHHHHCCCCEEEEEECSHHHHHHHHHTTCSCEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHTSSTTSCCE
T ss_pred HHHHHHHHHhCCCCeEEEecCcCHHHHHHHHHcCCCEEEeccHHHHHHhcCCCCCCCCCHHHHHHHHHhhhccCCCCCcE
Confidence 35679997665 5899999999999999999999999987 8999999999999999999999999999999998 5669
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccC---Cccccc--ccc------
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVG---LTPQAI--SVL------ 225 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiG---LtPQ~~--~~~------ 225 (243)
++|+||| |+ +++++.+|+.+++ ++||++|||||... .+.|||++ |+|+.. ..+
T Consensus 92 iaD~d~G-yg-~~~~v~~~v~~l~-~aGaagv~iEDq~~-------------~k~cgh~~gk~l~~~~e~~~rI~Aa~~A 155 (307)
T 3lye_A 92 IADMDTG-YG-GPIMVARTVEHYI-RSGVAGAHLEDQIL-------------TKRCGHLSGKKVVSRDEYLVRIRAAVAT 155 (307)
T ss_dssp EEECTTC-SS-SHHHHHHHHHHHH-HTTCCEEEECCBCC-------------CC--------CBCCHHHHHHHHHHHHHH
T ss_pred EEECCCC-CC-CHHHHHHHHHHHH-HcCCeEEEEcCCCC-------------CcccCCCCCCeecCHHHHHHHHHHHHHH
Confidence 9999996 85 8999999988887 59999999999842 57899998 999865 222
Q ss_pred ----c-CccccccCHH
Q 026125 226 ----G-GFRPQGKNVT 236 (243)
Q Consensus 226 ----G-GykvqGkt~~ 236 (243)
| +|.+.+||..
T Consensus 156 ~~~~~~d~~I~ARTDa 171 (307)
T 3lye_A 156 KRRLRSDFVLIARTDA 171 (307)
T ss_dssp HHHTTCCCEEEEEECC
T ss_pred HHhcCCCeEEEEechh
Confidence 4 7888888853
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-26 Score=208.91 Aligned_cols=111 Identities=25% Similarity=0.273 Sum_probs=101.5
Q ss_pred HHHHHHhhhCCC-cEEEEecCCHHHHHHHHHcCCCEEEe-CcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEe
Q 026125 81 LTHLRQKHKNGE-PITMVTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (243)
Q Consensus 81 v~~Lr~~kk~g~-~ItmlTAYD~~sA~iae~AGiDiILV-GDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVa 158 (243)
-.+||+++++++ +|+|+||||+.||++++++|||+|++ |||++|+++|+||++++|++||++|+++|+|++++.+|++
T Consensus 6 ~~~Lr~ll~~~~~~i~~~~a~D~~sA~l~e~aGf~ai~vsG~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~~Pvia 85 (302)
T 3fa4_A 6 ATSLRRALENPDSFIVAPGVYDGLSARVALSAGFDALYMTGAGTAASVHGQADLGICTLNDMRANAEMISNISPSTPVIA 85 (302)
T ss_dssp HHHHHHHHHSTTCCEEEEEECSHHHHHHHHTTTCSCEEECHHHHHHHHHSCCSSSCCCHHHHHHHHHHHHTTSTTSCEEE
T ss_pred HHHHHHHHhCCCCeEEEecCcCHHHHHHHHHcCCCEEEeCcHHHHHHHcCCCCCCcCCHHHHHHHHHHHHhhccCCCEEE
Confidence 357999887764 79999999999999999999999987 8999999999999999999999999999999987777999
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
||||| |+ +++++.+|+.+++ ++||++|||||..
T Consensus 86 D~d~G-yg-~~~~v~~tv~~l~-~aGaagv~iEDq~ 118 (302)
T 3fa4_A 86 DADTG-YG-GPIMVARTTEQYS-RSGVAAFHIEDQV 118 (302)
T ss_dssp ECTTT-TS-SHHHHHHHHHHHH-HTTCCEEEECSBC
T ss_pred ECCCC-CC-CHHHHHHHHHHHH-HcCCcEEEECCCC
Confidence 99996 85 8999999988877 5999999999984
|
| >3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-13 Score=130.08 Aligned_cols=110 Identities=14% Similarity=0.103 Sum_probs=76.6
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEE-eCcchhhh----hccCCCCccCCHHHHHHHHHHHHccc----
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL-VGDSAAMV----VHGHDTTLPITLEEMLVHCRAVARGA---- 151 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiIL-VGDSlgmv----~lG~~dT~~vTldeMi~h~~aV~Rga---- 151 (243)
-..|+++++.++++.+++|||..+|++++++|++.|. .|-.++.. .+|+||...++++||+.+++.|.+++
T Consensus 50 a~~lr~Ll~~~~~l~~~ga~D~~sA~~~~~aGf~Aiy~SG~~vAa~~~~~~~G~PD~~~~~~~ev~~~v~rI~~a~~~~d 129 (433)
T 3eol_A 50 ANRLWKLIHEEDFVNALGALSGNQAMQMVRAGLKAIYLSGWQVAADANTASAMYPDQSLYPANAGPELAKRINRTLQRAD 129 (433)
T ss_dssp HHHHHHHHHHSSCEEEEBCSSHHHHHHHHHTTCCCEEEC-----------------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCEEeCCCCcHHHHHHHHHhCCCEEEechHHHHhccchhcCCCCCCccCCHHHHHHHHHHHHHHHHHhh
Confidence 4679999999999999999999999999999999995 66566653 68999999999999999999998875
Q ss_pred ---------------CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 152 ---------------KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 152 ---------------~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
..| |++|..- +|+ ++.++.+++.+++ ++||.+|.|||..
T Consensus 130 ~~~~~~~~~~~~~d~~lP-IiaD~Dt-GfG-~~~nv~rtVk~~~-~AGaAGi~IEDQ~ 183 (433)
T 3eol_A 130 QIETAEGKGLSVDTWFAP-IVADAEA-GFG-DPLDAFEIMKAYI-EAGAAGVHFEDQL 183 (433)
T ss_dssp HHHHHTTSCCSSSCSCCC-EEEECC----C-CHHHHHHHHHHHH-HHTCSEEEEESBC
T ss_pred hhhhhhcccccccCCCCC-eEEECCC-CCC-CcHHHHHHHHHHH-HcCCeEEEEecCC
Confidence 455 7888877 774 6778888887777 6999999999974
|
| >1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A | Back alignment and structure |
|---|
Probab=99.41 E-value=6.3e-13 Score=126.83 Aligned_cols=111 Identities=14% Similarity=0.087 Sum_probs=94.0
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEE-eCcchhh----hhccCCCCccCCHHHHHHHHHHHHccc---
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL-VGDSAAM----VVHGHDTTLPITLEEMLVHCRAVARGA--- 151 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiIL-VGDSlgm----v~lG~~dT~~vTldeMi~h~~aV~Rga--- 151 (243)
.-..|+++.+.++++.+++|||..+|++++++|++.|. .|-.++. ..+|+||...++++||+.+++.|.+++
T Consensus 53 ~a~~lr~lL~~~~~~~~~ga~d~~sA~~~~~aGf~Aiy~SG~~vAa~~~~s~~G~PD~~~~~~~ev~~~v~~I~~a~~~~ 132 (429)
T 1f8m_A 53 GAEVLWEQLHDLEWVNALGALTGNMAVQQVRAGLKAIYLSGWQVAGDANLSGHTYPDQSLYPANSVPQVVRRINNALQRA 132 (429)
T ss_dssp HHHHHHHHHHHSSCEEEEBCCSHHHHHHHHHTTCSCEEECHHHHHHHCCTTCCCCCSSSCSCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCceecCCCCCHHHHHHHHHcCCCEEEechHHHhcccccccCCCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 34568877777889999999999999999999999995 5555555 589999999999999999999999986
Q ss_pred -------------C--CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 152 -------------K--RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 152 -------------~--~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
+ .| |++|..- +|+ ++.++.+++.+++ ++||.+|+|||..
T Consensus 133 d~~~~~~~~~~~~d~~~P-IiaD~Dt-GfG-~~~nv~~tvk~~i-~AGaaGi~IEDq~ 186 (429)
T 1f8m_A 133 DQIAKIEGDTSVENWLAP-IVADGEA-GFG-GALNVYELQKALI-AAGVAGSHWEDQL 186 (429)
T ss_dssp HHHHHHHTCCSCSCSSCC-EEEECTT-TTS-SHHHHHHHHHHHH-HTTCSEEEEECBC
T ss_pred HHHHHhhccCccccCCCC-EEEECCC-CCC-CcHHHHHHHHHHH-HcCCEEEEEecCC
Confidence 3 45 7888887 785 6778888887777 6999999999974
|
| >3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.5e-13 Score=126.57 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=95.2
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEE-eCcchhh----hhccCCCCccCCHHHHHHHHHHHHccc---
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL-VGDSAAM----VVHGHDTTLPITLEEMLVHCRAVARGA--- 151 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiIL-VGDSlgm----v~lG~~dT~~vTldeMi~h~~aV~Rga--- 151 (243)
.-..||++++.++++.+++|||..+|++++++|++.|. .|-+++. ..+|+||...++++||+..++.|.++.
T Consensus 53 ~a~~Lr~ll~~~~~l~~~Ga~D~~sA~~~~~aGf~Aiy~SG~~vAa~~~~s~~G~PD~~~~~~~ev~~~v~rI~~a~~~a 132 (439)
T 3i4e_A 53 GAEKLWTLINNEPFVNALGALTGNQAMQQVKAGLKAIYLSGWQVAGDANVAGEMYPDQSLYPANSVPLVVKRINNTLTRA 132 (439)
T ss_dssp HHHHHHHHHHHSSCEEEEBCCSHHHHHHHHHHTCSCEEECHHHHHHHTCTTCCCCCSSSCSCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEeCCCCCHHHHHHHHHhCCCEEEechHHHhcccccccCCCCCcccCCHHHHHHHHHHHHHHHHHh
Confidence 35779999999999999999999999999999999995 5556665 479999999999999999999998873
Q ss_pred -----------------C--CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 152 -----------------K--RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 152 -----------------~--~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
+ .| |++|..- +|+ ++.++.+++.+++ ++||.+|.|||..
T Consensus 133 d~i~~~~~~~~~~~~~~d~~~P-viaD~dt-GfG-~~~~v~~~vk~~~-~aGaaGi~iEDq~ 190 (439)
T 3i4e_A 133 DQIQWSEGKNPGDEGYVDFFAP-IVADAEA-GFG-GVLNAFELMKAMI-EAGASGVHFEDQL 190 (439)
T ss_dssp HHHHHHTTCCTTSTTCCCCCCC-EEEECTT-TTS-SHHHHHHHHHHHH-HHTCSEEEEESBC
T ss_pred HhhhhhhccccccccccCCCCC-eEEECCC-CCC-ccHHHHHHHHHHH-HcCCEEEEEeCCC
Confidence 3 45 7888888 785 6778888887777 6999999999974
|
| >3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A | Back alignment and structure |
|---|
Probab=99.39 E-value=9e-13 Score=125.88 Aligned_cols=110 Identities=14% Similarity=0.141 Sum_probs=94.0
Q ss_pred HHHHHHhhhC---CCcEEEEecCCHHHHHHHHHcCCCEEE-eCcchhh----hhccCCCCccCCHHHHHHHHHHHHccc-
Q 026125 81 LTHLRQKHKN---GEPITMVTAYDYPSAVHLDSAGIDICL-VGDSAAM----VVHGHDTTLPITLEEMLVHCRAVARGA- 151 (243)
Q Consensus 81 v~~Lr~~kk~---g~~ItmlTAYD~~sA~iae~AGiDiIL-VGDSlgm----v~lG~~dT~~vTldeMi~h~~aV~Rga- 151 (243)
-..|++++++ ++++.+++|||..+|++++++|+++|. .|-+++. ..+|+||...++++||+.+++.|.+++
T Consensus 51 a~~Lr~ll~~~~~~~~~~~~Ga~d~~sA~~~~~aGf~Aiy~SG~~vAa~~~~s~~G~PD~gl~~~~ev~~~v~rI~~a~~ 130 (435)
T 3lg3_A 51 AKKLWELLHGGSRKGYINCLGALTGGQALQQAKAGVEAIYMSGWQVAADANTASSMYPDQSLYPVDSVPAVVKRINNSFR 130 (435)
T ss_dssp HHHHHHHHTTTSSSSSEEEEBCCSHHHHHHHHHHTCCSEEECHHHHHHHCCTTCSCCCSSSCSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCcEEeCCCCcHHHHHHHHHcCCCEEEechHHHhcccchhccCCCCcCcCcHHHHHHHHHHHHHHHH
Confidence 3678998888 899999999999999999999999885 6656766 479999999999999999999998875
Q ss_pred --C-------------------CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 152 --K-------------------RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 152 --~-------------------~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
+ .| |++|..- +|+ ++.++.+++.+++ ++||.+|.|||..
T Consensus 131 ~~d~~~~~~~~~~~~~~~~d~~lP-viaD~Dt-GyG-~~~~v~~tv~~~~-~aGaaGi~IEDq~ 190 (435)
T 3lg3_A 131 RADQIQWSNNIEPGSKGYTDYFLP-IVADAEA-GFG-GVLNAFELMKAMI-EAGAAGVHFEDQL 190 (435)
T ss_dssp HHHHHHHHTTCCTTSTTCCCCCCC-EEEECTT-CSS-SHHHHHHHHHHHH-HHTCSEEEEESBC
T ss_pred hhhhhhhhccccccccccccCCCC-eEEECCC-CCC-CcHHHHHHHHHHH-HcCCEEEEEecCC
Confidence 1 45 7888888 785 6778888887777 6999999999974
|
| >1dqu_A Isocitrate lyase; beta barrel; 2.80A {Emericella nidulans} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=99.28 E-value=9.2e-12 Score=121.58 Aligned_cols=108 Identities=13% Similarity=0.133 Sum_probs=90.3
Q ss_pred HHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEE-eCcchhhhh----ccCCCCccCCHHHHHHHHHHHHcc------
Q 026125 82 THLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL-VGDSAAMVV----HGHDTTLPITLEEMLVHCRAVARG------ 150 (243)
Q Consensus 82 ~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiIL-VGDSlgmv~----lG~~dT~~vTldeMi~h~~aV~Rg------ 150 (243)
..|+++++.++++.+++|||+.+|++++ +|++.|. .|-.++... +|+||...++++||+.+++.|.++
T Consensus 61 ~~lr~l~~~~~~l~~pga~D~~sA~~~~-~gf~Aiy~SG~~vAas~~~~~~G~PD~~~~~~~ev~~~v~~I~~a~~~~D~ 139 (538)
T 1dqu_A 61 GILERNFKNKEASFTYGCLDPTMVTQMA-KYLDTVYVSGWQSSSTASSTDEPSPDLADYPMNTVPNKVNHLWMAQLFHDR 139 (538)
T ss_dssp HHHHHHHHHTCCEEEEBCCSHHHHHHHH-HHCSCEEECHHHHHHHCCTTCCCCSSCSCSCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCcEEecCCCCHHHHHHHH-hcCCeeecccHHHHhhcccccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567777789999999999999999988 7999885 555555443 699999999999999999999988
Q ss_pred -------------------cC--CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 151 -------------------AK--RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 151 -------------------a~--~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
++ .| |++|..- +|+ ++.++.+++.+++ ++||.+|.|||..
T Consensus 140 ~q~~~r~~~~~~~~~~~~~~d~~lP-IiaD~Dt-GfG-~~~nv~~tvk~~i-eAGaAGihIEDQ~ 200 (538)
T 1dqu_A 140 KQREERMTTPKDQRHKVANVDYLRP-IIADADT-GHG-GLTAVMKLTKLFV-ERGAAGIHIEDQA 200 (538)
T ss_dssp HHHHHHHSSCHHHHTTSCCCCCCCC-EEEECTT-CSS-SHHHHHHHHHHHH-HTTCSEEEECSBC
T ss_pred HHHhhhhccchhhhccccccCcCCc-eEEecCC-cCC-chHHHHHHHHHHH-HcCCeEEEeeccC
Confidence 54 45 7888888 784 7788888887777 6999999999974
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00087 Score=61.29 Aligned_cols=104 Identities=16% Similarity=0.236 Sum_probs=74.4
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCC-CCccCCHHHHHHHHHHHHccc----CCCcEE--eeCCCCCCcCCHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHD-TTLPITLEEMLVHCRAVARGA----KRPLLV--GDLPFGTYESSTNQAVDTA 176 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~-dT~~vTldeMi~h~~aV~Rga----~~~fvV--aDmPfgsY~~s~e~Av~nA 176 (243)
+++..+++|++.|-+-|..+---.|+- ....++.+||+...++.+.+. +.-+|+ .|- |.. ...++|++-+
T Consensus 100 tv~~l~~aGaagv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa-~~~--~gldeAi~Ra 176 (302)
T 3fa4_A 100 TTEQYSRSGVAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVVIARTDS-LQT--HGYEESVARL 176 (302)
T ss_dssp HHHHHHHTTCCEEEECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECC-HHH--HCHHHHHHHH
T ss_pred HHHHHHHcCCcEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEEEEEecc-ccc--CCHHHHHHHH
Confidence 456778899999999999876555664 447899999999999998774 334444 564 222 3689999999
Q ss_pred HHHHHHhCCCEEEeCCCCCchHHHHHHHHHc--CCceee
Q 026125 177 VRILKEGGMDAIKLEGGSPSRITAARGIVEA--GIAVMG 213 (243)
Q Consensus 177 ~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~--GIPV~G 213 (243)
.... ++|||+|.+||-.. .+-+++++++ +.|++-
T Consensus 177 ~ay~-eAGAD~ifi~g~~~--~~ei~~~~~~~~~~Pl~~ 212 (302)
T 3fa4_A 177 RAAR-DAGADVGFLEGITS--REMARQVIQDLAGWPLLL 212 (302)
T ss_dssp HHHH-TTTCSEEEETTCCC--HHHHHHHHHHTTTSCEEE
T ss_pred HHHH-HcCCCEEeecCCCC--HHHHHHHHHHhcCCceeE
Confidence 7776 79999999999753 3336788876 688754
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0015 Score=59.19 Aligned_cols=108 Identities=14% Similarity=0.123 Sum_probs=72.7
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccC---CCCccCCHHHHHHHHHHHHcccCC-Cc-EEe--eCCCCCCcCCHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGH---DTTLPITLEEMLVHCRAVARGAKR-PL-LVG--DLPFGTYESSTNQAVDTA 176 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~---~dT~~vTldeMi~h~~aV~Rga~~-~f-vVa--DmPfgsY~~s~e~Av~nA 176 (243)
+++..+++|++.|-+-|...--..|| ++...++.+||+...++++++... .| |++ |--... ...+++++-|
T Consensus 99 ~v~~l~~aGaagv~iED~~~~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRtda~~a~--~g~~~ai~Ra 176 (295)
T 1s2w_A 99 LVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAG--WGLDEALKRA 176 (295)
T ss_dssp HHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTT--CCHHHHHHHH
T ss_pred HHHHHHHcCCcEEEECCCCCCccccccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHHhcc--ccHHHHHHHH
Confidence 45667789999999999875444444 345689999999999999887632 34 444 432222 3579999999
Q ss_pred HHHHHHhCCCEEEeCCCCCchHHHHHHHHHc--C-Cceeecc
Q 026125 177 VRILKEGGMDAIKLEGGSPSRITAARGIVEA--G-IAVMGHV 215 (243)
Q Consensus 177 ~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~--G-IPV~GHi 215 (243)
..+. ++|||+|.+|++..... .++.++++ + |||+.-.
T Consensus 177 ~ay~-eAGAd~i~~e~~~~~~~-~~~~i~~~~~~~~P~i~~~ 216 (295)
T 1s2w_A 177 EAYR-NAGADAILMHSKKADPS-DIEAFMKAWNNQGPVVIVP 216 (295)
T ss_dssp HHHH-HTTCSEEEECCCSSSSH-HHHHHHHHHTTCSCEEECC
T ss_pred HHHH-HcCCCEEEEcCCCCCHH-HHHHHHHHcCCCCCEEEeC
Confidence 7766 79999999998532222 25666664 3 9998653
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0011 Score=60.83 Aligned_cols=104 Identities=19% Similarity=0.195 Sum_probs=73.7
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCC-CCccCCHHHHHHHHHHHHccc---CCCc-EE--eeCCCCCCcCCHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHD-TTLPITLEEMLVHCRAVARGA---KRPL-LV--GDLPFGTYESSTNQAVDTA 176 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~-dT~~vTldeMi~h~~aV~Rga---~~~f-vV--aDmPfgsY~~s~e~Av~nA 176 (243)
+++..+++|++.|-+-|...--..||- ....++.+||+...++.+.+. +..| |+ .|- |.. ...+++++-+
T Consensus 108 ~v~~l~~aGaagv~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa-~~~--~gldeAi~Ra 184 (307)
T 3lye_A 108 TVEHYIRSGVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVLIARTDA-LQS--LGYEECIERL 184 (307)
T ss_dssp HHHHHHHTTCCEEEECCBCCCC--------CBCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECC-HHH--HCHHHHHHHH
T ss_pred HHHHHHHcCCeEEEEcCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEechh-hhc--cCHHHHHHHH
Confidence 467778999999999999875555653 346899999999999988765 3344 44 553 211 3588999999
Q ss_pred HHHHHHhCCCEEEeCCCCCchHHHHHHHHHc--CCceee
Q 026125 177 VRILKEGGMDAIKLEGGSPSRITAARGIVEA--GIAVMG 213 (243)
Q Consensus 177 ~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~--GIPV~G 213 (243)
.... ++|||+|.+||-.. .+.+++++++ ++||+-
T Consensus 185 ~ay~-eAGAD~ifi~~~~~--~~~~~~i~~~~~~~Pv~~ 220 (307)
T 3lye_A 185 RAAR-DEGADVGLLEGFRS--KEQAAAAVAALAPWPLLL 220 (307)
T ss_dssp HHHH-HTTCSEEEECCCSC--HHHHHHHHHHHTTSCBEE
T ss_pred HHHH-HCCCCEEEecCCCC--HHHHHHHHHHccCCceeE
Confidence 7776 79999999998753 3346778876 799854
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0019 Score=58.85 Aligned_cols=107 Identities=17% Similarity=0.201 Sum_probs=76.0
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCC-CCccCCHHHHHHHHHHHHcccC--CCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHD-TTLPITLEEMLVHCRAVARGAK--RPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~-dT~~vTldeMi~h~~aV~Rga~--~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
+++..+++|++.|-+-|..+--..||. ....++.+||+...++.+++.. .-+|++=..--. ....+++++-+....
T Consensus 103 ~v~~l~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~-~~gldeai~Ra~ay~ 181 (298)
T 3eoo_A 103 TIRSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAA-AEGIDAAIERAIAYV 181 (298)
T ss_dssp HHHHHHHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhh-hcCHHHHHHHHHhhH
Confidence 457778899999999998876556664 4468999999999999888763 334443332211 124788999987776
Q ss_pred HHhCCCEEEeCCCCCchHHHHHHHHHc-CCceeec
Q 026125 181 KEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 181 keaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~GH 214 (243)
++|||+|.+|+-.. ..+ +++++++ .+||+.-
T Consensus 182 -~AGAD~if~~~~~~-~ee-~~~~~~~~~~Pl~~n 213 (298)
T 3eoo_A 182 -EAGADMIFPEAMKT-LDD-YRRFKEAVKVPILAN 213 (298)
T ss_dssp -HTTCSEEEECCCCS-HHH-HHHHHHHHCSCBEEE
T ss_pred -hcCCCEEEeCCCCC-HHH-HHHHHHHcCCCeEEE
Confidence 79999999999852 233 5666654 5788553
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0035 Score=56.80 Aligned_cols=108 Identities=23% Similarity=0.277 Sum_probs=79.6
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCC-CcEE---eeCCCCCCcCCHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR-PLLV---GDLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~-~fvV---aDmPfgsY~~s~e~Av~nA~Rl 179 (243)
+++-.+++|++.|-+-|...---.|+.+...++.+||+...++++++... .|+| .|- .. ...+++++-|..+
T Consensus 102 ~v~~l~~aGa~gv~iED~~~pKrcgh~~gkl~~~~e~~~~I~aa~~a~~~~~~~i~aRtda--a~--~gl~~ai~Ra~ay 177 (287)
T 3b8i_A 102 TVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARVDPALTIIARTNA--EL--IDVDAVIQRTLAY 177 (287)
T ss_dssp HHHHHHHHTCSEEEEECBCCSCCTTTCTTCBCCHHHHHHHHHHHHHHCCSTTSEEEEEEET--TT--SCHHHHHHHHHHH
T ss_pred HHHHHHHhCCeEEEEcCCCCccccCCCCCCccCHHHHHHHHHHHHHcCCCCCcEEEEechh--hh--cCHHHHHHHHHHH
Confidence 45566789999999999876555677777799999999999999887542 3444 455 22 3689999999766
Q ss_pred HHHhCCCEEEeCCCCCchHHHHHHHHHc-CCceeecc---CCccc
Q 026125 180 LKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGHV---GLTPQ 220 (243)
Q Consensus 180 ~keaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~GHi---GLtPQ 220 (243)
. ++|||+|.+|+-. ..+.+++++++ .||++ | |-+|.
T Consensus 178 ~-eAGAd~i~~e~~~--~~~~~~~i~~~~~~P~i--i~~~g~~~~ 217 (287)
T 3b8i_A 178 Q-EAGADGICLVGVR--DFAHLEAIAEHLHIPLM--LVTYGNPQL 217 (287)
T ss_dssp H-HTTCSEEEEECCC--SHHHHHHHHTTCCSCEE--EECTTCGGG
T ss_pred H-HcCCCEEEecCCC--CHHHHHHHHHhCCCCEE--EeCCCCCCC
Confidence 6 7999999999753 23346777663 58999 5 55543
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.003 Score=55.47 Aligned_cols=122 Identities=15% Similarity=0.169 Sum_probs=74.5
Q ss_pred HHHhhhCCCc--EEEEecCCHH------HHHHHHHcCCCEEEeCcchhh-hhccCC--------CCccCCHHHHHHHHHH
Q 026125 84 LRQKHKNGEP--ITMVTAYDYP------SAVHLDSAGIDICLVGDSAAM-VVHGHD--------TTLPITLEEMLVHCRA 146 (243)
Q Consensus 84 Lr~~kk~g~~--ItmlTAYD~~------sA~iae~AGiDiILVGDSlgm-v~lG~~--------dT~~vTldeMi~h~~a 146 (243)
|.++++++++ |.++|+-|+. .|+..+++|+|+|-+|-..+- ..-|-. =...+|++.++..+++
T Consensus 8 f~~~~~~~~~~~i~~i~~g~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ 87 (262)
T 2ekc_A 8 FTELKEKREKALVSYLMVGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSET 87 (262)
T ss_dssp HHHHHHHTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5554444444 5566775544 477788999999988754421 000000 0112688999999999
Q ss_pred HHccc-CCCcEEeeCCCCCCcCCHHHH--HHHHHHHHHHhCCCEEEeCCCC-CchHHHHHHHHHcCCce
Q 026125 147 VARGA-KRPLLVGDLPFGTYESSTNQA--VDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAV 211 (243)
Q Consensus 147 V~Rga-~~~fvVaDmPfgsY~~s~e~A--v~nA~Rl~keaGAdaVKLEGg~-~~~~~~i~~L~~~GIPV 211 (243)
|++-. +.|+++ | +|- |+-.. ++.-.+...++|+|++-+-|-. +.....++.+.+.|+.+
T Consensus 88 ir~~~~~~Pi~~--m---~y~-n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~~~gl~~ 150 (262)
T 2ekc_A 88 LRKEFPDIPFLL--M---TYY-NPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMKKYVLSF 150 (262)
T ss_dssp HHHHCTTSCEEE--E---CCH-HHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHTTCEE
T ss_pred HHhhcCCCCEEE--E---ecC-cHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCcE
Confidence 99887 666544 3 442 43222 2333455668999999987663 22445677788888554
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.008 Score=54.42 Aligned_cols=124 Identities=15% Similarity=0.108 Sum_probs=79.4
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCC---CccCCHHHHHHHHHHHHcccC--CCcEEeeCCCCCCcCCHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDT---TLPITLEEMLVHCRAVARGAK--RPLLVGDLPFGTYESSTNQAVDTAVR 178 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~d---T~~vTldeMi~h~~aV~Rga~--~~fvVaDmPfgsY~~s~e~Av~nA~R 178 (243)
+++-.+++|++.|-+-|...--..||-. ...++.+||+...++++++.. .-+|++=..----....+++++-|..
T Consensus 95 ~v~~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~Ra~a 174 (290)
T 2hjp_A 95 VVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQA 174 (290)
T ss_dssp HHHHHHHHTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhccccHHHHHHHHHH
Confidence 4566778999999999987655555543 468899999999999988753 23444433221012358999999976
Q ss_pred HHHHhCCCEEEeCCCCCchHHHHHHHHHc-C--Cceeecc----CCcccccccccCcc
Q 026125 179 ILKEGGMDAIKLEGGSPSRITAARGIVEA-G--IAVMGHV----GLTPQAISVLGGFR 229 (243)
Q Consensus 179 l~keaGAdaVKLEGg~~~~~~~i~~L~~~-G--IPV~GHi----GLtPQ~~~~~GGyk 229 (243)
+. ++|||+|.+|++...... ++.++++ . ||++.-. .++++.-..+|-|+
T Consensus 175 y~-eAGAd~i~~e~~~~~~~~-~~~i~~~~~~~vP~i~n~~~~~~~~~~eL~~lG~v~ 230 (290)
T 2hjp_A 175 YE-EAGADAILIHSRQKTPDE-ILAFVKSWPGKVPLVLVPTAYPQLTEADIAALSKVG 230 (290)
T ss_dssp HH-HTTCSEEEECCCCSSSHH-HHHHHHHCCCSSCEEECGGGCTTSCHHHHHTCTTEE
T ss_pred HH-HcCCcEEEeCCCCCCHHH-HHHHHHHcCCCCCEEEeccCCCCCCHHHHHhcCCee
Confidence 66 799999999995322223 4556552 3 9998643 34554444553244
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.024 Score=50.89 Aligned_cols=101 Identities=14% Similarity=0.141 Sum_probs=71.7
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc---CCCcEE-eeCCC-C-CCc----CCHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA---KRPLLV-GDLPF-G-TYE----SSTNQA 172 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga---~~~fvV-aDmPf-g-sY~----~s~e~A 172 (243)
-+++-.+++|++.|-+-|... ++....++.+||+...++++++. ..+|+| +=..- . +.+ ...+++
T Consensus 96 ~~v~~l~~aGaagv~iED~~~-----~~~k~l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~~~~a 170 (275)
T 2ze3_A 96 RTVEHFAALGVAGVNLEDATG-----LTPTELYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATDEERLAET 170 (275)
T ss_dssp HHHHHHHHTTCSEEEEECBCS-----SSSSCBCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEECCCcC-----CCCCccCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccchhhHHHH
Confidence 356667789999999998875 36678999999999999998874 456655 43322 1 110 136899
Q ss_pred HHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHc-CCce
Q 026125 173 VDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAV 211 (243)
Q Consensus 173 v~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV 211 (243)
++-|..+. ++|||+|.+|+-.. .+.++.++++ .||+
T Consensus 171 i~Ra~ay~-eAGAd~i~~e~~~~--~~~~~~i~~~~~~P~ 207 (275)
T 2ze3_A 171 VRRGQAYA-DAGADGIFVPLALQ--SQDIRALADALRVPL 207 (275)
T ss_dssp HHHHHHHH-HTTCSEEECTTCCC--HHHHHHHHHHCSSCE
T ss_pred HHHHHHHH-HCCCCEEEECCCCC--HHHHHHHHHhcCCCE
Confidence 99987666 79999999999642 2335666653 5786
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.015 Score=52.74 Aligned_cols=108 Identities=15% Similarity=0.180 Sum_probs=75.9
Q ss_pred HHHHHHHHHcCCCEEEeCcchhhhhccCCCC-ccCCHHHHHHHHHHHHcccC-CCcEE-eeCCCCCCcCCHHHHHHHHHH
Q 026125 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGAK-RPLLV-GDLPFGTYESSTNQAVDTAVR 178 (243)
Q Consensus 102 ~~sA~iae~AGiDiILVGDSlgmv~lG~~dT-~~vTldeMi~h~~aV~Rga~-~~fvV-aDmPfgsY~~s~e~Av~nA~R 178 (243)
+-+++..+++|++.|-+-|..+--..||-.. ..++.+||+...++.+++.. ..|+| +=..-. .....+++++-|..
T Consensus 97 ~~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~-~~~gl~~ai~ra~a 175 (295)
T 1xg4_A 97 ARTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDAL-AVEGLDAAIERAQA 175 (295)
T ss_dssp HHHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCH-HHHCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHh-hhcCHHHHHHHHHH
Confidence 4466777889999999999887666666653 47899999999999888763 34544 433210 11246899999976
Q ss_pred HHHHhCCCEEEeCCCCCchHHHHHHHHH-cCCceee
Q 026125 179 ILKEGGMDAIKLEGGSPSRITAARGIVE-AGIAVMG 213 (243)
Q Consensus 179 l~keaGAdaVKLEGg~~~~~~~i~~L~~-~GIPV~G 213 (243)
+. ++|||+|.+|+-.. .+.++.+++ -.|||+.
T Consensus 176 y~-eAGAd~i~~e~~~~--~~~~~~i~~~~~iP~~~ 208 (295)
T 1xg4_A 176 YV-EAGAEMLFPEAITE--LAMYRQFADAVQVPILA 208 (295)
T ss_dssp HH-HTTCSEEEETTCCS--HHHHHHHHHHHCSCBEE
T ss_pred HH-HcCCCEEEEeCCCC--HHHHHHHHHHcCCCEEE
Confidence 66 79999999998642 233455554 2589865
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.017 Score=51.20 Aligned_cols=103 Identities=16% Similarity=0.047 Sum_probs=72.3
Q ss_pred HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc---CCCcEE---eeCCCCCC---cCCHHHH
Q 026125 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA---KRPLLV---GDLPFGTY---ESSTNQA 172 (243)
Q Consensus 102 ~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga---~~~fvV---aDmPfgsY---~~s~e~A 172 (243)
+-+++-..++|++.|-+-|.. +.+....++.+||+...++++++. ..+|+| .|.-..+. ....+++
T Consensus 96 ~~~~~~l~~aGa~gv~iEd~~-----~~~~k~l~~~~e~~~~I~a~~~a~~~~g~~~~v~aRtd~~~~g~~~~~~~~~~a 170 (255)
T 2qiw_A 96 ADLIAQILEAGAVGINVEDVV-----HSEGKRVREAQEHADYIAAARQAADVAGVDVVINGRTDAVKLGADVFEDPMVEA 170 (255)
T ss_dssp HHHHHHHHHTTCCEEEECSEE-----GGGTTEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECHHHHCTTTSSSHHHHH
T ss_pred HHHHHHHHHcCCcEEEECCCC-----CCCCCcccCHHHHHHHHHHHHHHHHhcCCCeEEEEEechhhccCCcchHHHHHH
Confidence 556777778999999998886 234557799999999999998873 345555 44310111 1237899
Q ss_pred HHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHc-CCcee
Q 026125 173 VDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVM 212 (243)
Q Consensus 173 v~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~ 212 (243)
++-|..+. ++|||+|.+|+-.. .+.++.++++ .||+.
T Consensus 171 i~ra~a~~-eAGAd~i~~e~~~~--~~~~~~i~~~~~~P~n 208 (255)
T 2qiw_A 171 IKRIKLME-QAGARSVYPVGLST--AEQVERLVDAVSVPVN 208 (255)
T ss_dssp HHHHHHHH-HHTCSEEEECCCCS--HHHHHHHHTTCSSCBE
T ss_pred HHHHHHHH-HcCCcEEEEcCCCC--HHHHHHHHHhCCCCEE
Confidence 99997666 79999999998642 3446777763 46764
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.034 Score=48.04 Aligned_cols=125 Identities=16% Similarity=0.173 Sum_probs=73.8
Q ss_pred HHHhhhCCCc--EEEEecCCH------HHHHHHHHcCCCEEEeCcchhh-hhccCCC--------CccCCHHHHHHHHHH
Q 026125 84 LRQKHKNGEP--ITMVTAYDY------PSAVHLDSAGIDICLVGDSAAM-VVHGHDT--------TLPITLEEMLVHCRA 146 (243)
Q Consensus 84 Lr~~kk~g~~--ItmlTAYD~------~sA~iae~AGiDiILVGDSlgm-v~lG~~d--------T~~vTldeMi~h~~a 146 (243)
|.++++++++ +..+++-|. ..++.++++|+|+|-+|.+..- ++-|.-- ...+++++.+..+++
T Consensus 9 ~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ 88 (262)
T 1rd5_A 9 MAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLRE 88 (262)
T ss_dssp HHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEeeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5555555554 444555454 1366778899999988865531 0111000 122588999999999
Q ss_pred HHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC-CchHHHHHHHHHcCCceeeccC
Q 026125 147 VARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVMGHVG 216 (243)
Q Consensus 147 V~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~-~~~~~~i~~L~~~GIPV~GHiG 216 (243)
|++..+.|+++-+ | .|+... ...+.+.++|||+|.+.+.. +....+++.+.+.|++++=++.
T Consensus 89 ir~~~~~Pv~~m~-----~-~~~~~~--~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~~~~g~~~i~~~a 151 (262)
T 1rd5_A 89 VTPELSCPVVLLS-----Y-YKPIMF--RSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTT 151 (262)
T ss_dssp HGGGCSSCEEEEC-----C-SHHHHS--CCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEEC
T ss_pred HHhcCCCCEEEEe-----c-CcHHHH--HHHHHHHHcCCCEEEEcCCChhhHHHHHHHHHHcCCceEEEEC
Confidence 9988777755421 3 132210 00111457999999998764 2345566777788877654443
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.052 Score=49.51 Aligned_cols=133 Identities=14% Similarity=0.155 Sum_probs=81.8
Q ss_pred hCCCc-EEEEecCCH----HHHHHHHHcCCCEE-E-eCcchhhhh-ccCCCCccCCHHHHHHHHHHHHcccCCCcEE-ee
Q 026125 89 KNGEP-ITMVTAYDY----PSAVHLDSAGIDIC-L-VGDSAAMVV-HGHDTTLPITLEEMLVHCRAVARGAKRPLLV-GD 159 (243)
Q Consensus 89 k~g~~-ItmlTAYD~----~sA~iae~AGiDiI-L-VGDSlgmv~-lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV-aD 159 (243)
..+.| ++.+...|. ..|+.++++|+|.| + .|-...++. -||-....-..+-+...+++|++.++.|+.+ .-
T Consensus 55 ~~~~p~~vQL~g~~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR 134 (350)
T 3b0p_A 55 PEEHPIALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMR 134 (350)
T ss_dssp GGGCSEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEE
T ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEe
Confidence 34444 455555553 24566778899998 3 443443332 2333344456677777888888877777544 23
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC--------------chHHHHHHHHHc--CCceeeccCC-ccccc
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP--------------SRITAARGIVEA--GIAVMGHVGL-TPQAI 222 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~--------------~~~~~i~~L~~~--GIPV~GHiGL-tPQ~~ 222 (243)
+.+..+ .+.++.++.|.++. ++|+|+|.+.|+.. ...+.++.+.+. +|||++==|+ +|+.+
T Consensus 135 ~g~~~~-~~~~~~~~~a~~l~-~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda 212 (350)
T 3b0p_A 135 LGLEGK-ETYRGLAQSVEAMA-EAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEA 212 (350)
T ss_dssp SCBTTC-CCHHHHHHHHHHHH-HTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHH
T ss_pred cCcCcc-ccHHHHHHHHHHHH-HcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHH
Confidence 444333 35567777776655 79999999998531 123456777775 7999987675 55544
Q ss_pred c
Q 026125 223 S 223 (243)
Q Consensus 223 ~ 223 (243)
.
T Consensus 213 ~ 213 (350)
T 3b0p_A 213 L 213 (350)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.025 Score=51.26 Aligned_cols=93 Identities=18% Similarity=0.327 Sum_probs=60.9
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCC--------CCCCc---C--CHHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP--------FGTYE---S--STNQ 171 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmP--------fgsY~---~--s~e~ 171 (243)
.++.+++|++.|-+-|. +||....++++++ ..| |++.+. +|+|. . ..++
T Consensus 119 ~rl~~eaGa~aVklEdg----------------~e~~~~I~al~~a-gIp-V~gHiGLtPqsv~~~ggf~v~grt~~a~~ 180 (281)
T 1oy0_A 119 TRFLKDGGAHAVKLEGG----------------ERVAEQIACLTAA-GIP-VMAHIGFTPQSVNTLGGFRVQGRGDAAEQ 180 (281)
T ss_dssp HHHHHTTCCSEEEEEBS----------------GGGHHHHHHHHHH-TCC-EEEEEECCC--------------CHHHHH
T ss_pred HHHHHHhCCeEEEECCc----------------HHHHHHHHHHHHC-CCC-EEeeecCCcceecccCCeEEEeCcHHHHH
Confidence 67888899999977665 3778888888763 345 332211 23341 1 2477
Q ss_pred HHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHc-CCceeeccCCccc
Q 026125 172 AVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGHVGLTPQ 220 (243)
Q Consensus 172 Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~GHiGLtPQ 220 (243)
+++-|..+. |+||++|.+|+-.. +++++++++ .|||+| ||=-|.
T Consensus 181 ~i~rA~a~~-eAGA~~ivlE~vp~---~~a~~it~~l~iP~ig-IGaG~~ 225 (281)
T 1oy0_A 181 TIADAIAVA-EAGAFAVVMEMVPA---ELATQITGKLTIPTVG-IGAGPN 225 (281)
T ss_dssp HHHHHHHHH-HHTCSEEEEESCCH---HHHHHHHHHCSSCEEE-ESSCSC
T ss_pred HHHHHHHHH-HcCCcEEEEecCCH---HHHHHHHHhCCCCEEE-eCCCCC
Confidence 888887655 79999999999642 346667654 699998 555443
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=96.07 E-value=0.064 Score=46.93 Aligned_cols=120 Identities=15% Similarity=0.114 Sum_probs=71.3
Q ss_pred HHHhhhCCCc--EEEEecCCH--H----HHHHHHHcCCCEEEeCcchhh-hhccCCC--------CccCCHHHHHHHHHH
Q 026125 84 LRQKHKNGEP--ITMVTAYDY--P----SAVHLDSAGIDICLVGDSAAM-VVHGHDT--------TLPITLEEMLVHCRA 146 (243)
Q Consensus 84 Lr~~kk~g~~--ItmlTAYD~--~----sA~iae~AGiDiILVGDSlgm-v~lG~~d--------T~~vTldeMi~h~~a 146 (243)
|.++++++++ +..+++=|+ . .++..+++|+|+|-+|-..+- .+-|..- ...++++.++..+++
T Consensus 8 f~~~~~~~~~~~i~~i~~gdp~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ 87 (268)
T 1qop_A 8 FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAI 87 (268)
T ss_dssp HHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5555555555 445566665 2 466778899999988753320 0000000 012578888899999
Q ss_pred HHcc-cCCCcEEeeCCC----CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC-CchHHHHHHHHHcCCce
Q 026125 147 VARG-AKRPLLVGDLPF----GTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAV 211 (243)
Q Consensus 147 V~Rg-a~~~fvVaDmPf----gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~-~~~~~~i~~L~~~GIPV 211 (243)
|++. .+.|+++ |.| -.| ..++- .+.+.++|||+|-+-+-. +....+++.+.+.|+.+
T Consensus 88 ir~~~~~~Pv~l--m~y~n~v~~~--g~~~~----~~~~~~aGadgii~~d~~~e~~~~~~~~~~~~g~~~ 150 (268)
T 1qop_A 88 IREKHPTIPIGL--LMYANLVFNN--GIDAF----YARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAP 150 (268)
T ss_dssp HHHHCSSSCEEE--EECHHHHHTT--CHHHH----HHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEE
T ss_pred HHhcCCCCCEEE--EEcccHHHHh--hHHHH----HHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHcCCcE
Confidence 9987 6777544 211 112 22333 344557999999887664 23456678888888653
|
| >3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.043 Score=52.64 Aligned_cols=112 Identities=21% Similarity=0.179 Sum_probs=77.1
Q ss_pred HHHHHHHcCCCEEEeCcchh-hhhccCC-CCccCCHHHHHHHHHHHHccc---CCCcEE---eeCC--------------
Q 026125 104 SAVHLDSAGIDICLVGDSAA-MVVHGHD-TTLPITLEEMLVHCRAVARGA---KRPLLV---GDLP-------------- 161 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlg-mv~lG~~-dT~~vTldeMi~h~~aV~Rga---~~~fvV---aDmP-------------- 161 (243)
..+.++++|+-.|-+-|.++ ---.||- ....++.+|++...++++.+. ..+|+| .|--
T Consensus 172 ~vk~~~~aGaaGi~iEDq~~~~KkCGH~~gk~lv~~~e~v~rI~Aar~A~~~~g~d~~IiARTDa~~a~l~~s~~d~~d~ 251 (439)
T 3i4e_A 172 LMKAMIEAGASGVHFEDQLASVKKCGHMGGKVLVPTREAVAKLTAARLAADVMGTPTVLVARTDAEAADLITSDIDDNDK 251 (439)
T ss_dssp HHHHHHHHTCSEEEEESBCGGGCBCSTTCBCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECTTTCCEESCCCCTTTG
T ss_pred HHHHHHHcCCEEEEEeCCCCCccccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEEcCcccccccccccccccc
Confidence 45677899999999999986 3445554 346899999999999998664 334444 5641
Q ss_pred -----------CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHc-----CCceeeccCCcc
Q 026125 162 -----------FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA-----GIAVMGHVGLTP 219 (243)
Q Consensus 162 -----------fgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~-----GIPV~GHiGLtP 219 (243)
|-.+....++|++-|..+. + |||+|.+|.+...... ++.++++ -.+++. .|.+|
T Consensus 252 ~fi~G~r~~eg~~~~~~gldeAI~Ra~AY~-~-GAD~if~E~~~~~~ee-i~~f~~~v~~~~P~~~l~-~~~sP 321 (439)
T 3i4e_A 252 PYLTGERTVEGFFRTKPGLEQAISRGLAYA-P-YADLIWCETGKPDLEY-AKKFAEAIHKQFPGKLLS-YNCSP 321 (439)
T ss_dssp GGEEEEECTTSCEEECCSHHHHHHHHHHHT-T-TCSEEEECCSSCCHHH-HHHHHHHHHHHSTTCEEE-EECCS
T ss_pred hhhcccCcccccccccCCHHHHHHHHHHHH-h-hCCEEEecCCCCCHHH-HHHHHHHhcccCCceEEe-eCCCC
Confidence 1112346899999998666 6 9999999988644444 5666653 123333 47788
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.048 Score=50.06 Aligned_cols=106 Identities=17% Similarity=0.103 Sum_probs=73.8
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCC-CccCCHHHHHHHHHHHHcccC--CCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDT-TLPITLEEMLVHCRAVARGAK--RPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~d-T~~vTldeMi~h~~aV~Rga~--~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
+++-.+++|++.|-+-|...--..||-. ...++.+||+...++++++.. .-+|++=..--. ....+++++-|..+.
T Consensus 121 tv~~l~~aGaagv~iED~~~~k~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ARtda~a-~~gl~~ai~Ra~Ay~ 199 (318)
T 1zlp_A 121 FIRELISAGAKGVFLEDQVWPKKCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLVARTDARA-PHGLEEGIRRANLYK 199 (318)
T ss_dssp HHHHHHHTTCCEEEEECBCSSCCCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEEECTHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEECCCCCCccccCCCCCccCCHHHHHHHHHHHHHhcccCCcEEEEeeHHhh-hcCHHHHHHHHHHHH
Confidence 4566778999999999988655566654 457899999999999988763 334444332201 113478999987666
Q ss_pred HHhCCCEEEeCCCCCchHHHHHHHHH-cCCceee
Q 026125 181 KEGGMDAIKLEGGSPSRITAARGIVE-AGIAVMG 213 (243)
Q Consensus 181 keaGAdaVKLEGg~~~~~~~i~~L~~-~GIPV~G 213 (243)
++|||+|.+|+-.. .+.++.+++ -.||++.
T Consensus 200 -eAGAd~i~~e~~~~--~e~~~~i~~~l~~P~la 230 (318)
T 1zlp_A 200 -EAGADATFVEAPAN--VDELKEVSAKTKGLRIA 230 (318)
T ss_dssp -HTTCSEEEECCCCS--HHHHHHHHHHSCSEEEE
T ss_pred -HcCCCEEEEcCCCC--HHHHHHHHHhcCCCEEE
Confidence 79999999998642 233566665 3589853
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.11 Score=47.34 Aligned_cols=103 Identities=18% Similarity=0.143 Sum_probs=69.0
Q ss_pred CCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcch---------hhhhccCCCCccCCHHHHHHHHHHHHc
Q 026125 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSA---------AMVVHGHDTTLPITLEEMLVHCRAVAR 149 (243)
Q Consensus 79 ~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSl---------gmv~lG~~dT~~vTldeMi~h~~aV~R 149 (243)
--+.+|+++.++|+||+-..+=.-.+|+.+|+.|+|+|++-.|- -..+|-|-|-..+.+| ..+.|.-
T Consensus 15 ~il~~l~~~i~~~~~iig~gaGtGlsAk~~e~gGaDlii~ynsGrfR~~G~~slag~lpygnaN~iv~e----~~~evlp 90 (286)
T 2p10_A 15 ELVDRFQKKIRAGEPIIGGGAGTGLSAKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLLAYGNANQIVVD----MAREVLP 90 (286)
T ss_dssp HHHHHHHHHHHTTCCEEEEEESSHHHHHHHHHTTCSEEEECHHHHHHHTTCCGGGGGBTEEEHHHHHHH----HHHHHGG
T ss_pred HHHHHHHHHHhcCCceEEEecccchhhHHHHhCCCCEEEEeccchhhhcCccchhhhccccCHHHHHHH----HHHhhhc
Confidence 34677899999999999999999999999999999999985332 1234445555555554 3334555
Q ss_pred ccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 150 GAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 150 ga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
.+++..|++-+.=.....+....+ +.+|+.|+.+| +
T Consensus 91 ~v~~iPV~Agv~~~DP~~~~g~~L----e~lk~~Gf~Gv-~ 126 (286)
T 2p10_A 91 VVRHTPVLAGVNGTDPFMVMSTFL----RELKEIGFAGV-Q 126 (286)
T ss_dssp GCSSSCEEEEECTTCTTCCHHHHH----HHHHHHTCCEE-E
T ss_pred cCCCCCEEEEECCcCCCcCHHHHH----HHHHHhCCceE-E
Confidence 554444554442222223455554 56678999999 5
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.06 Score=46.56 Aligned_cols=93 Identities=14% Similarity=0.209 Sum_probs=63.6
Q ss_pred CCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCC---CccCCHHHHHHHHHHHHcccCCCc
Q 026125 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDT---TLPITLEEMLVHCRAVARGAKRPL 155 (243)
Q Consensus 79 ~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~d---T~~vTldeMi~h~~aV~Rga~~~f 155 (243)
-++.++.+..++...+++..+.+...|+.++++|+|+|.++ ..||.+ +...+++ ..+.+++. +.|
T Consensus 116 ~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~Gad~Ig~~------~~g~t~~~~~~~~~~~----li~~l~~~-~ip- 183 (229)
T 3q58_A 116 VDIDSLLTRIRLHGLLAMADCSTVNEGISCHQKGIEFIGTT------LSGYTGPITPVEPDLA----MVTQLSHA-GCR- 183 (229)
T ss_dssp SCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCSEEECT------TTTSSSSCCCSSCCHH----HHHHHHTT-TCC-
T ss_pred HHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhCCCCEEEec------CccCCCCCcCCCCCHH----HHHHHHHc-CCC-
Confidence 46777766655556889999999999999999999999653 234432 2233443 34556665 555
Q ss_pred EEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 156 vVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
+|+.= +. .+++++ .+++ +.|||+|-+ |+
T Consensus 184 vIA~G---GI-~t~~d~----~~~~-~~GadgV~V-Gs 211 (229)
T 3q58_A 184 VIAEG---RY-NTPALA----ANAI-EHGAWAVTV-GS 211 (229)
T ss_dssp EEEES---SC-CSHHHH----HHHH-HTTCSEEEE-CH
T ss_pred EEEEC---CC-CCHHHH----HHHH-HcCCCEEEE-ch
Confidence 66663 44 367887 5566 589999998 44
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.065 Score=47.59 Aligned_cols=121 Identities=17% Similarity=0.174 Sum_probs=73.6
Q ss_pred HHHHhhhCCCc--EEEEecCCHH------HHHHHHHcCCCEEEeCcchhh-hhccCC--------CCccCCHHHHHHHHH
Q 026125 83 HLRQKHKNGEP--ITMVTAYDYP------SAVHLDSAGIDICLVGDSAAM-VVHGHD--------TTLPITLEEMLVHCR 145 (243)
Q Consensus 83 ~Lr~~kk~g~~--ItmlTAYD~~------sA~iae~AGiDiILVGDSlgm-v~lG~~--------dT~~vTldeMi~h~~ 145 (243)
.|.+++++|++ |..+|+-|.. .++..+++ +|+|-+|-..+- +..|-. =...++++.++..++
T Consensus 6 ~f~~~~~~~~~~li~~i~~GdP~~~~~~~~~~~l~~~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~ 84 (271)
T 1ujp_A 6 AFAKARSEGRAALIPYLTAGFPSREGFLQAVEEVLPY-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVR 84 (271)
T ss_dssp HHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHGGG-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCceEEEEecCCCCChHHHHHHHHHHHhc-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56666666655 5566776643 34556777 999988743320 000000 001279999999999
Q ss_pred HHHcccCCCcEEeeCCCCCCcCCHHH--HHHHHHHHHHHhCCCEEEeCCCC-CchHHHHHHHHHcCCc
Q 026125 146 AVARGAKRPLLVGDLPFGTYESSTNQ--AVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIA 210 (243)
Q Consensus 146 aV~Rga~~~fvVaDmPfgsY~~s~e~--Av~nA~Rl~keaGAdaVKLEGg~-~~~~~~i~~L~~~GIP 210 (243)
+|++..+.|+++ | +|- |+-. ....-.+...++|+|++-+-|-. +.....++.+.+.|++
T Consensus 85 ~ir~~~~~Pii~--m---~y~-n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~~~~gl~ 146 (271)
T 1ujp_A 85 EVRALTEKPLFL--M---TYL-NPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLE 146 (271)
T ss_dssp HHHHHCCSCEEE--E---CCH-HHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCE
T ss_pred HHHhcCCCCEEE--E---ecC-cHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHHcCCc
Confidence 999886677544 3 442 3221 33344555668999999887763 2345667888888854
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.15 Score=48.01 Aligned_cols=98 Identities=13% Similarity=0.153 Sum_probs=58.3
Q ss_pred HHHHHhhhC-CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCC--CccCCHHHHHHHHHHHHcccCCCcEEe
Q 026125 82 THLRQKHKN-GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDT--TLPITLEEMLVHCRAVARGAKRPLLVG 158 (243)
Q Consensus 82 ~~Lr~~kk~-g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~d--T~~vTldeMi~h~~aV~Rga~~~fvVa 158 (243)
..+++.++. +.|+.+-++-+...|+.++++|+|+|.||-.-|... +..+ ...+..-+.+..+...++..+.| ||+
T Consensus 174 e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~aGAD~I~vG~g~Gs~~-~tr~~~g~g~p~~~al~~v~~~~~~~~IP-VIA 251 (400)
T 3ffs_A 174 RTLKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSIC-TTRIVAGVGVPQITAIEKCSSVASKFGIP-IIA 251 (400)
T ss_dssp HHHHHHHTTCCCEEEEEEECSHHHHHHHHHTTCSEEEECC----------CCSCBCCCHHHHHHHHHHHHTTTTCC-EEE
T ss_pred HHHHHHHhcCCCeEEEeecCCHHHHHHHHHcCCCEEEEeCCCCcCc-ccccccccchhHHHHHHHHHHHHHhcCCC-EEe
Confidence 445555444 667766689999999999999999999864322111 1111 01123333444444444445555 778
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
|=. . .+.+++ .+.+ +.||++|.+
T Consensus 252 ~GG---I-~~~~di----~kal-alGAd~V~v 274 (400)
T 3ffs_A 252 DGG---I-RYSGDI----GKAL-AVGASSVMI 274 (400)
T ss_dssp ESC---C-CSHHHH----HHHH-TTTCSEEEE
T ss_pred cCC---C-CCHHHH----HHHH-HcCCCEEEE
Confidence 743 3 356776 4566 589999998
|
| >3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.05 Score=52.15 Aligned_cols=114 Identities=18% Similarity=0.163 Sum_probs=78.1
Q ss_pred HHHHHHHHcCCCEEEeCcchh-hhhccCC-CCccCCHHHHHHHHHHHHccc---CCCcEE---eeC--------------
Q 026125 103 PSAVHLDSAGIDICLVGDSAA-MVVHGHD-TTLPITLEEMLVHCRAVARGA---KRPLLV---GDL-------------- 160 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlg-mv~lG~~-dT~~vTldeMi~h~~aV~Rga---~~~fvV---aDm-------------- 160 (243)
-+.+.++++|+-.|.+-|.++ ---.|+. ....++.+||+...++++.+. +.+|+| .|-
T Consensus 171 ~tv~~~~~aGaaGi~IEDq~~~~KkCGh~~gk~lv~~~e~~~rI~Aa~~A~~~~~~d~~IiARTDa~aa~l~~s~~d~rD 250 (435)
T 3lg3_A 171 ELMKAMIEAGAAGVHFEDQLAAVKKCGHMGGKVLVPTQEAIQKLVAARLAADVLGVPTLLIARTDADAADLLTSDCDPYD 250 (435)
T ss_dssp HHHHHHHHHTCSEEEEESBCGGGCBCSTTCBCEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECTTTCCEESCCCCGGG
T ss_pred HHHHHHHHcCCEEEEEecCCCCccccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEEcCCcccccccccccccc
Confidence 457778899999999999985 4445655 446899999999999998664 344444 563
Q ss_pred -CCC----------CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHc-----CCceeeccCCccc
Q 026125 161 -PFG----------TYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA-----GIAVMGHVGLTPQ 220 (243)
Q Consensus 161 -Pfg----------sY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~-----GIPV~GHiGLtPQ 220 (243)
+|. .|....++|++-|..+. + |||+|.+|.+.....+ ++.++++ -.+++. .|.+|.
T Consensus 251 ~~fi~G~r~~eG~y~~~~gld~AI~Ra~AY~-~-GAD~if~E~~~~~~~e-i~~f~~~v~~~~P~~~La-~~~sPs 322 (435)
T 3lg3_A 251 REFITGDRTAEGFFRTRAGIEQAISRGLAYA-P-YADLVWCETSTPDLAL-AKRFADAVHAQFPGKLLA-YNCSPS 322 (435)
T ss_dssp GGGEEEEECTTCCEEECCSHHHHHHHHHHHG-G-GCSEEEECCSSCCHHH-HHHHHHHHHHHSTTCEEE-EECCSS
T ss_pred chhhcccccccccccccCCHHHHHHHHHHHH-c-cCCEEEecCCCCCHHH-HHHHHHHhccccCCeEEE-eCCCCC
Confidence 111 12246899999998766 6 9999999988644444 5556543 122333 477773
|
| >3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.054 Score=51.88 Aligned_cols=102 Identities=23% Similarity=0.201 Sum_probs=69.5
Q ss_pred HHHHHHHHcCCCEEEeCcchh-hhhccCC-CCccCCHHHHHHHHHHHHcccC---CCcEE---eeC--------------
Q 026125 103 PSAVHLDSAGIDICLVGDSAA-MVVHGHD-TTLPITLEEMLVHCRAVARGAK---RPLLV---GDL-------------- 160 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlg-mv~lG~~-dT~~vTldeMi~h~~aV~Rga~---~~fvV---aDm-------------- 160 (243)
-+.+..+++|+-.|-+-|.++ ---.||- ....++.+||+...++++.+.. ..|+| .|-
T Consensus 164 rtVk~~~~AGaAGi~IEDQ~~~~KkCGH~~gk~lvp~ee~v~rI~AAr~A~~~~g~d~vIiARTDA~~a~l~~s~~d~rd 243 (433)
T 3eol_A 164 EIMKAYIEAGAAGVHFEDQLASEKKCGHLGGKVLIPTAAHIRNLNAARLAADVMGTPTLIVARTDAEAAKLLTSDIDERD 243 (433)
T ss_dssp HHHHHHHHHTCSEEEEESBCC---------CCEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECTTTCCEESCCCSTTT
T ss_pred HHHHHHHHcCCeEEEEecCCCCCCcCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEEEcCCccccccccCccccc
Confidence 456778999999999999986 3444443 3468999999999999987652 34444 563
Q ss_pred -CCCC------------CcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHc
Q 026125 161 -PFGT------------YESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA 207 (243)
Q Consensus 161 -Pfgs------------Y~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~ 207 (243)
+|.. +....++|++-|.... + |||+|.+|.+.....+ ++.++++
T Consensus 244 ~~fl~g~g~r~~eG~y~~~~gld~AI~Ra~AY~-~-GAD~If~e~~~~~~ee-i~~f~~~ 300 (433)
T 3eol_A 244 QPFVDYEAGRTAEGFYQVKNGIEPCIARAIAYA-P-YCDLIWMETSKPDLAQ-ARRFAEA 300 (433)
T ss_dssp GGGBCSSSCBCTTCCEEBCCSHHHHHHHHHHHG-G-GCSEEEECCSSCCHHH-HHHHHHH
T ss_pred ccceeccCcccccccccccCCHHHHHHHHHHHH-h-cCCEEEEeCCCCCHHH-HHHHHHH
Confidence 2321 2246899999998766 6 9999999998544444 5666653
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.083 Score=47.04 Aligned_cols=122 Identities=18% Similarity=0.199 Sum_probs=74.7
Q ss_pred HHHhhhCCCc--EEEEecCCHH------HHHHHHHcCCCEEEeC----cchhh--hhccCCC---CccCCHHHHHHHHHH
Q 026125 84 LRQKHKNGEP--ITMVTAYDYP------SAVHLDSAGIDICLVG----DSAAM--VVHGHDT---TLPITLEEMLVHCRA 146 (243)
Q Consensus 84 Lr~~kk~g~~--ItmlTAYD~~------sA~iae~AGiDiILVG----DSlgm--v~lG~~d---T~~vTldeMi~h~~a 146 (243)
|.+++++|++ +..+|+-|+. .++..+++|+|+|=+| |.++= +..--.. -..+|+++++...+.
T Consensus 9 f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ 88 (267)
T 3vnd_A 9 FAALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITK 88 (267)
T ss_dssp HHHHHHHTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5555555554 5667887762 2555789999999877 22210 1110000 012789999999999
Q ss_pred HHcc-cCCCcEEeeCCCCCCcCCHHH--HHHHHHHHHHHhCCCEEEeCCCC-CchHHHHHHHHHcCCce
Q 026125 147 VARG-AKRPLLVGDLPFGTYESSTNQ--AVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAV 211 (243)
Q Consensus 147 V~Rg-a~~~fvVaDmPfgsY~~s~e~--Av~nA~Rl~keaGAdaVKLEGg~-~~~~~~i~~L~~~GIPV 211 (243)
+++. .+.|+++ | +| .|+-. .+++=.+.++++|+|++-+-|-. ++...+++.+.+.|+.+
T Consensus 89 ir~~~~~~Pivl--m---~Y-~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~~gl~~ 151 (267)
T 3vnd_A 89 VRAQHPDMPIGL--L---LY-ANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAP 151 (267)
T ss_dssp HHHHCTTCCEEE--E---EC-HHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEE
T ss_pred HHhcCCCCCEEE--E---ec-CcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHHcCCeE
Confidence 9876 6667443 2 45 24411 12333455568999999887763 34556778888999764
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.059 Score=48.71 Aligned_cols=91 Identities=16% Similarity=0.253 Sum_probs=59.1
Q ss_pred HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCC--------CCCCc-----CCHHHHH
Q 026125 107 HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP--------FGTYE-----SSTNQAV 173 (243)
Q Consensus 107 iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmP--------fgsY~-----~s~e~Av 173 (243)
-..++|++.|-+-|. +||....++++++ ..| |++.+. +|+|. ...++++
T Consensus 103 rl~kaGa~aVklEdg----------------~e~~~~I~al~~a-gIp-V~gHiGLtPQs~~~~ggf~v~grt~~a~~~i 164 (275)
T 1o66_A 103 ELMAAGAHMVKLEGG----------------VWMAETTEFLQMR-GIP-VCAHIGLTPQSVFAFGGYKVQGRGGKAQALL 164 (275)
T ss_dssp HHHHTTCSEEEEECS----------------GGGHHHHHHHHHT-TCC-EEEEEESCGGGTTC-----------CHHHHH
T ss_pred HHHHcCCcEEEECCc----------------HHHHHHHHHHHHc-CCC-eEeeeccCceeecccCCeEEEeChHHHHHHH
Confidence 455599999977665 3778888888763 345 343322 23441 1357889
Q ss_pred HHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHc-CCceeeccCCccc
Q 026125 174 DTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGHVGLTPQ 220 (243)
Q Consensus 174 ~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~GHiGLtPQ 220 (243)
+-|..+. |+||++|.+|+-.. +++++++++ .|||+| ||=-|.
T Consensus 165 ~rA~a~~-eAGA~~ivlE~vp~---~~a~~it~~l~iP~ig-IGaG~~ 207 (275)
T 1o66_A 165 NDAKAHD-DAGAAVVLMECVLA---ELAKKVTETVSCPTIG-IGAGAD 207 (275)
T ss_dssp HHHHHHH-HTTCSEEEEESCCH---HHHHHHHHHCSSCEEE-ESSCSC
T ss_pred HHHHHHH-HcCCcEEEEecCCH---HHHHHHHHhCCCCEEE-ECCCCC
Confidence 8887665 79999999999642 346667654 699998 554443
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=95.57 E-value=0.076 Score=47.43 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=74.9
Q ss_pred HHHhhhCCCc--EEEEecCCHHH------HHHHHHcCCCEEEeCcch----hh--hhcc--C-CCCccCCHHHHHHHHHH
Q 026125 84 LRQKHKNGEP--ITMVTAYDYPS------AVHLDSAGIDICLVGDSA----AM--VVHG--H-DTTLPITLEEMLVHCRA 146 (243)
Q Consensus 84 Lr~~kk~g~~--ItmlTAYD~~s------A~iae~AGiDiILVGDSl----gm--v~lG--~-~dT~~vTldeMi~h~~a 146 (243)
|.+++++|++ |..+|+-|+.. ++..+++|+|+|=+|-.. +- +.+- . .=...+++++.+...+.
T Consensus 11 f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~ 90 (271)
T 3nav_A 11 FQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQ 90 (271)
T ss_dssp HHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5566666654 56678877432 455778999999777322 10 1110 0 00012788888999999
Q ss_pred HHcc-cCCCcEEeeCCCCCCcCCHHH--HHHHHHHHHHHhCCCEEEeCCCC-CchHHHHHHHHHcCCcee
Q 026125 147 VARG-AKRPLLVGDLPFGTYESSTNQ--AVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVM 212 (243)
Q Consensus 147 V~Rg-a~~~fvVaDmPfgsY~~s~e~--Av~nA~Rl~keaGAdaVKLEGg~-~~~~~~i~~L~~~GIPV~ 212 (243)
+++. .+.|+++ | +|- |+-. .+++-.+..+++|+|++-+-|-. ++...+++.+.+.|+.++
T Consensus 91 ~r~~~~~~Pivl--m---~Y~-n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~~gl~~I 154 (271)
T 3nav_A 91 IRARNPETPIGL--L---MYA-NLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPI 154 (271)
T ss_dssp HHHHCTTSCEEE--E---ECH-HHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEE
T ss_pred HHhcCCCCCEEE--E---ecC-cHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcCCeEE
Confidence 9875 5667543 2 452 4322 22333455568999999887764 335566788888897643
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=95.57 E-value=0.1 Score=47.08 Aligned_cols=93 Identities=24% Similarity=0.170 Sum_probs=64.5
Q ss_pred CCHHHHHHhhhCCCcEEE-EecCCHHHHHHHHHcCCCEEEe-CcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 79 VTLTHLRQKHKNGEPITM-VTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 79 ~tv~~Lr~~kk~g~~Itm-lTAYD~~sA~iae~AGiDiILV-GDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
-|+...+.+++.|=+ ++ ++.-|...|+.++++|+|++.. |--.|. -.|.. ++ +++ +.|++..+.| |
T Consensus 123 ~tv~aa~~L~~~Gf~-Vlpy~~dd~~~akrl~~~G~~aVmPlg~pIGs-G~Gi~-----~~-~lI---~~I~e~~~vP-V 190 (265)
T 1wv2_A 123 ETLKAAEQLVKDGFD-VMVYTSDDPIIARQLAEIGCIAVMPLAGLIGS-GLGIC-----NP-YNL---RIILEEAKVP-V 190 (265)
T ss_dssp HHHHHHHHHHTTTCE-EEEEECSCHHHHHHHHHSCCSEEEECSSSTTC-CCCCS-----CH-HHH---HHHHHHCSSC-B
T ss_pred HHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHhCCCEEEeCCccCCC-CCCcC-----CH-HHH---HHHHhcCCCC-E
Confidence 467777778766644 55 6999999999999999999986 543333 12332 33 333 6677756666 5
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEG 192 (243)
|+| |+. .+++++ .+.| |.|||+|-+-.
T Consensus 191 I~e---GGI-~TPsDA----a~Am-eLGAdgVlVgS 217 (265)
T 1wv2_A 191 LVD---AGV-GTASDA----AIAM-ELGCEAVLMNT 217 (265)
T ss_dssp EEE---SCC-CSHHHH----HHHH-HHTCSEEEESH
T ss_pred EEe---CCC-CCHHHH----HHHH-HcCCCEEEECh
Confidence 665 456 488998 5667 68999998854
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.037 Score=50.04 Aligned_cols=92 Identities=22% Similarity=0.372 Sum_probs=58.5
Q ss_pred HHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC---C-----CCCCc---CC---HHH
Q 026125 106 VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL---P-----FGTYE---SS---TNQ 171 (243)
Q Consensus 106 ~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm---P-----fgsY~---~s---~e~ 171 (243)
.-+.++|++.|-+-|.. ++....+++++ ...| +++-+ | +|+|. .+ .++
T Consensus 113 ~rl~kaGa~aVklEdg~----------------~~~~~i~~l~~-~GIp-v~gHlgltPq~~~~~gg~~vqgrt~~~a~~ 174 (275)
T 3vav_A 113 VKLMRAGAQMVKFEGGE----------------WLAETVRFLVE-RAVP-VCAHVGLTPQSVHAFGGFKVQGKTEAGAAQ 174 (275)
T ss_dssp HHHHHTTCSEEEEECCG----------------GGHHHHHHHHH-TTCC-EEEEEESCGGGHHHHC---CCCCSHHHHHH
T ss_pred HHHHHcCCCEEEECCch----------------hHHHHHHHHHH-CCCC-EEEecCCCceEEeccCCeEEEcCCHHHHHH
Confidence 34456799999877663 34555666654 3344 34332 2 34442 23 457
Q ss_pred HHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHc-CCceeeccCCccc
Q 026125 172 AVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGHVGLTPQ 220 (243)
Q Consensus 172 Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~GHiGLtPQ 220 (243)
+++-|..+. |+||++|.+|+=.. . +++.++++ .|||+| ||-=|.
T Consensus 175 ~i~rA~a~~-eAGA~~ivlE~vp~--~-~a~~It~~l~iP~ig-IGaG~~ 219 (275)
T 3vav_A 175 LLRDARAVE-EAGAQLIVLEAVPT--L-VAAEVTRELSIPTIG-IGAGAE 219 (275)
T ss_dssp HHHHHHHHH-HHTCSEEEEESCCH--H-HHHHHHHHCSSCEEE-ESSCSC
T ss_pred HHHHHHHHH-HcCCCEEEecCCCH--H-HHHHHHHhCCCCEEE-EccCCC
Confidence 788876655 79999999999863 3 46777764 799999 776665
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.084 Score=45.66 Aligned_cols=93 Identities=18% Similarity=0.201 Sum_probs=63.1
Q ss_pred CCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCC---CccCCHHHHHHHHHHHHcccCCCc
Q 026125 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDT---TLPITLEEMLVHCRAVARGAKRPL 155 (243)
Q Consensus 79 ~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~d---T~~vTldeMi~h~~aV~Rga~~~f 155 (243)
.++.++.+..++...++++.+.+...|+.++++|+|+|.++ ..|+.+ +...+++ ..+.+++. +.|
T Consensus 116 ~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~Gad~Ig~~------~~g~t~~~~~~~~~~~----~i~~l~~~-~ip- 183 (232)
T 3igs_A 116 VAVEALLARIHHHHLLTMADCSSVDDGLACQRLGADIIGTT------MSGYTTPDTPEEPDLP----LVKALHDA-GCR- 183 (232)
T ss_dssp SCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHTTCSEEECT------TTTSSSSSCCSSCCHH----HHHHHHHT-TCC-
T ss_pred HHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhCCCCEEEEc------CccCCCCCCCCCCCHH----HHHHHHhc-CCc-
Confidence 46777766655556889999999999999999999999653 233432 1234443 33456554 555
Q ss_pred EEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 156 vVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
+|+.= +. .+++++ .+++ +.|||+|-+ |+
T Consensus 184 vIA~G---GI-~t~~d~----~~~~-~~GadgV~V-Gs 211 (232)
T 3igs_A 184 VIAEG---RY-NSPALA----AEAI-RYGAWAVTV-GS 211 (232)
T ss_dssp EEEES---CC-CSHHHH----HHHH-HTTCSEEEE-CH
T ss_pred EEEEC---CC-CCHHHH----HHHH-HcCCCEEEE-eh
Confidence 66663 44 367777 5566 589999988 44
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=95.37 E-value=0.098 Score=46.78 Aligned_cols=88 Identities=16% Similarity=0.145 Sum_probs=62.9
Q ss_pred EEEEecCCHH----HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC-CCcCC
Q 026125 94 ITMVTAYDYP----SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG-TYESS 168 (243)
Q Consensus 94 ItmlTAYD~~----sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg-sY~~s 168 (243)
|+-+++.+.. .|+.++++|+|.+++-- |.-...+-++++.|.++|+++++.|+++=|.|-- ++..+
T Consensus 77 iaGvg~~~t~~ai~la~~a~~~Gadavlv~~---------P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~ 147 (300)
T 3eb2_A 77 VAGVASTSVADAVAQAKLYEKLGADGILAIL---------EAYFPLKDAQIESYFRAIADAVEIPVVIYTNPQFQRSDLT 147 (300)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTCSEEEEEE---------CCSSCCCHHHHHHHHHHHHHHCSSCEEEEECTTTCSSCCC
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCEEEEcC---------CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECccccCCCCC
Confidence 3444555544 36788999999997642 2222358899999999999999999999999952 34456
Q ss_pred HHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 169 TNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 169 ~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
++.. .||.+--...+||-..|.
T Consensus 148 ~~~~----~~La~~pnIvgiKdssgd 169 (300)
T 3eb2_A 148 LDVI----ARLAEHPRIRYIKDASTN 169 (300)
T ss_dssp HHHH----HHHHTSTTEEEEEECSSB
T ss_pred HHHH----HHHHcCCCEEEEEcCCCC
Confidence 6554 455544568899998774
|
| >1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A | Back alignment and structure |
|---|
Probab=95.31 E-value=0.098 Score=50.01 Aligned_cols=101 Identities=21% Similarity=0.150 Sum_probs=71.0
Q ss_pred HHHHHHHHcCCCEEEeCcchh-hhhccCCCC-ccCCHHHHHHHHHHHHccc---CCCcEE---eeCCCC-----------
Q 026125 103 PSAVHLDSAGIDICLVGDSAA-MVVHGHDTT-LPITLEEMLVHCRAVARGA---KRPLLV---GDLPFG----------- 163 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlg-mv~lG~~dT-~~vTldeMi~h~~aV~Rga---~~~fvV---aDmPfg----------- 163 (243)
-..+..+++|+-.|-+-|.+. ---.||-.. ..++.+||+...++++.+. ..+|+| .|---.
T Consensus 167 ~tvk~~i~AGaaGi~IEDq~~~~KkCGH~~gk~lvp~~e~v~rI~AAr~A~~~~g~d~vIiARTDa~~a~li~s~~d~~d 246 (429)
T 1f8m_A 167 ELQKALIAAGVAGSHWEDQLASEKKCGHLGGKVLIPTQQHIRTLTSARLAADVADVPTVVIARTDAEAATLITSDVDERD 246 (429)
T ss_dssp HHHHHHHHTTCSEEEEECBCGGGCCCTTSSCCEECCHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTTCCEESCCCSTTT
T ss_pred HHHHHHHHcCCEEEEEecCCCccccccCCCCCeeeCHHHHHHHHHHHHHHHHhcCCCEEEEEEechhhhccccccccccc
Confidence 356778999999999999983 444565444 5799999999999998775 334444 554110
Q ss_pred --------------CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHH
Q 026125 164 --------------TYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE 206 (243)
Q Consensus 164 --------------sY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~ 206 (243)
.|....++|++-+.... + |||+|.+|.+...... ++.+++
T Consensus 247 ~~fl~g~~~~eg~y~~~~gld~AI~Ra~AYa-~-gAD~if~e~~~~~~ee-i~~f~~ 300 (429)
T 1f8m_A 247 QPFITGERTREGFYRTKNGIEPCIARAKAYA-P-FADLIWMETGTPDLEA-ARQFSE 300 (429)
T ss_dssp GGGEEEEECTTSCEEECCSHHHHHHHHHHHG-G-GCSEEEECCSSCCHHH-HHHHHH
T ss_pred cccccCCCCcccccccccCHHHHHHHHHHHH-h-cCCEEEeCCCCCCHHH-HHHHHH
Confidence 01246899999997665 5 8999999987544333 455554
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.2 Score=46.44 Aligned_cols=98 Identities=12% Similarity=0.048 Sum_probs=67.0
Q ss_pred CCCHHHHHHhhhC-CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 78 RVTLTHLRQKHKN-GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 78 ~~tv~~Lr~~kk~-g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
..|..+++..++. +.|+++=.+-+...|+.++++|+|.|.|...-|.. .|..+.+++-+....++|. +...|
T Consensus 203 ~~~w~~i~~lr~~~~~PvivK~v~~~e~A~~a~~~GaD~I~vsn~GG~~----~d~~~~~~~~L~~i~~av~---~~ipV 275 (352)
T 3sgz_A 203 SFCWNDLSLLQSITRLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQ----LDEVSASIDALREVVAAVK---GKIEV 275 (352)
T ss_dssp TCCHHHHHHHHHHCCSCEEEEEECSHHHHHHHHHTTCSEEEECCGGGTS----SCSSCCHHHHHHHHHHHHT---TSSEE
T ss_pred CCCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHcCCCEEEEeCCCCCc----cCCCccHHHHHHHHHHHhC---CCCeE
Confidence 4677777776543 67888888889999999999999999876544332 2445566665544444442 13347
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
++|=.. .+.+++ .+.+ ..||++|.+-
T Consensus 276 ia~GGI----~~g~Dv----~kaL-alGA~aV~iG 301 (352)
T 3sgz_A 276 YMDGGV----RTGTDV----LKAL-ALGARCIFLG 301 (352)
T ss_dssp EEESSC----CSHHHH----HHHH-HTTCSEEEES
T ss_pred EEECCC----CCHHHH----HHHH-HcCCCEEEEC
Confidence 888544 367888 4566 4899999983
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=95.03 E-value=0.12 Score=48.57 Aligned_cols=99 Identities=17% Similarity=0.242 Sum_probs=62.1
Q ss_pred HHHHHHhhhC--CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhcc--CCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 81 LTHLRQKHKN--GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHG--HDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 81 v~~Lr~~kk~--g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG--~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
+..++..++. +.|+.+-+..+...|+.++++|+|.|.||...|...-+ .++. ....-+.+..+..+++..+.| |
T Consensus 266 ~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~G~d~I~v~~~~G~~~~~~~~~~~-g~p~~~~l~~v~~~~~~~~ip-v 343 (494)
T 1vrd_A 266 IETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGV-GVPQLTAVMECSEVARKYDVP-I 343 (494)
T ss_dssp HHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHHCC-CCCHHHHHHHHHHHHHTTTCC-E
T ss_pred HHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHcCCCEEEEcCCCCccccccccCCC-CccHHHHHHHHHHHHhhcCCC-E
Confidence 3344444333 57887788999999999999999999986543310000 0111 123334455555555555556 6
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
++|= +. .+++++ .+.+ +.|||+|.+
T Consensus 344 ia~G---GI-~~~~di----~kal-a~GAd~V~i 368 (494)
T 1vrd_A 344 IADG---GI-RYSGDI----VKAL-AAGAESVMV 368 (494)
T ss_dssp EEES---CC-CSHHHH----HHHH-HTTCSEEEE
T ss_pred EEEC---Cc-CCHHHH----HHHH-HcCCCEEEE
Confidence 7773 44 477887 4666 479999997
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.2 Score=45.23 Aligned_cols=98 Identities=17% Similarity=0.189 Sum_probs=57.3
Q ss_pred CHHHHHHhhhC-CCcEEEEe-cCCHHHHHHHHHcCCCEEEeCcchhhhhc----cCCCCccCCHHHHHHHHHHHHcccCC
Q 026125 80 TLTHLRQKHKN-GEPITMVT-AYDYPSAVHLDSAGIDICLVGDSAAMVVH----GHDTTLPITLEEMLVHCRAVARGAKR 153 (243)
Q Consensus 80 tv~~Lr~~kk~-g~~ItmlT-AYD~~sA~iae~AGiDiILVGDSlgmv~l----G~~dT~~vTldeMi~h~~aV~Rga~~ 153 (243)
.+..++..++. +.++++.. .-+...|+.++++|+|.|.+|..-|.... +.......+++ ....|++..+.
T Consensus 136 ~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~aGad~Ivvs~hgG~~~~~~~~~~~g~~g~~~~----~l~~v~~~~~i 211 (336)
T 1ypf_A 136 VINMIQHIKKHLPESFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLA----ALRWCAKAASK 211 (336)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCHHHHHHSCSSTTCHHH----HHHHHHHTCSS
T ss_pred HHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEecCCCceeecccccCcCCchhHHH----HHHHHHHHcCC
Confidence 34445554433 12444444 88999999999999999998643322110 00010001233 33456666655
Q ss_pred CcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 154 PLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 154 ~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
| |++|=. . .+.+++ .+.+ +.|||+|.+=
T Consensus 212 p-VIa~GG---I-~~g~Dv----~kal-alGAdaV~iG 239 (336)
T 1ypf_A 212 P-IIADGG---I-RTNGDV----AKSI-RFGATMVMIG 239 (336)
T ss_dssp C-EEEESC---C-CSTHHH----HHHH-HTTCSEEEES
T ss_pred c-EEEeCC---C-CCHHHH----HHHH-HcCCCEEEeC
Confidence 5 778744 4 366777 4566 4799999983
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.45 Score=43.81 Aligned_cols=97 Identities=15% Similarity=0.188 Sum_probs=65.6
Q ss_pred CCCHHHHHHhhh-CCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 78 RVTLTHLRQKHK-NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 78 ~~tv~~Lr~~kk-~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
..++.+++..++ -+.|+++=.+.+...|+.++++|+|.|.|...-|- ..++.+.+++-+..-.+++.. +.| |
T Consensus 215 ~~~~~~i~~lr~~~~~PvivK~v~~~e~a~~a~~~Gad~I~vs~~ggr----~~~~g~~~~~~l~~v~~~v~~--~ip-V 287 (368)
T 2nli_A 215 KISPRDIEEIAGHSGLPVFVKGIQHPEDADMAIKRGASGIWVSNHGAR----QLYEAPGSFDTLPAIAERVNK--RVP-I 287 (368)
T ss_dssp BCCHHHHHHHHHHSSSCEEEEEECSHHHHHHHHHTTCSEEEECCGGGT----SCSSCCCHHHHHHHHHHHHTT--SSC-E
T ss_pred hhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHcCCCEEEEcCCCcC----CCCCCCChHHHHHHHHHHhCC--CCe-E
Confidence 457777776654 35788877778899999999999999988544321 235566677544443333321 234 7
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
++|= +. .+.+++ .+.+. .|||+|-+
T Consensus 288 ia~G---GI-~~g~D~----~kala-lGAd~V~i 312 (368)
T 2nli_A 288 VFDS---GV-RRGEHV----AKALA-SGADVVAL 312 (368)
T ss_dssp EECS---SC-CSHHHH----HHHHH-TTCSEEEE
T ss_pred EEEC---CC-CCHHHH----HHHHH-cCCCEEEE
Confidence 8884 44 477888 46674 89999999
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=94.96 E-value=0.31 Score=45.16 Aligned_cols=101 Identities=28% Similarity=0.423 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHH
Q 026125 100 YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 100 YD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl 179 (243)
.+...+..+-++|+|+|.+-- .+|++ ++.+...+.+++..+...+++ |+- .+++++ .++
T Consensus 108 ~~~~~~~~lieaGvd~I~idt-----a~G~~-------~~~~~~I~~ik~~~p~v~Vi~----G~v-~t~e~A----~~a 166 (366)
T 4fo4_A 108 GNEERVKALVEAGVDVLLIDS-----SHGHS-------EGVLQRIRETRAAYPHLEIIG----GNV-ATAEGA----RAL 166 (366)
T ss_dssp TCHHHHHHHHHTTCSEEEEEC-----SCTTS-------HHHHHHHHHHHHHCTTCEEEE----EEE-CSHHHH----HHH
T ss_pred hHHHHHHHHHhCCCCEEEEeC-----CCCCC-------HHHHHHHHHHHHhcCCCceEe----eee-CCHHHH----HHH
Confidence 346788889999999987621 12332 345566677777665444544 223 467777 455
Q ss_pred HHHhCCCEEEe---CCCCC----------chHHHHHHHH----HcCCceeeccCC-ccccc
Q 026125 180 LKEGGMDAIKL---EGGSP----------SRITAARGIV----EAGIAVMGHVGL-TPQAI 222 (243)
Q Consensus 180 ~keaGAdaVKL---EGg~~----------~~~~~i~~L~----~~GIPV~GHiGL-tPQ~~ 222 (243)
+ ++|||+|++ .|+.. -....+..+. ..+|||++==|+ +|..+
T Consensus 167 ~-~aGAD~I~vG~gpGs~~~tr~~~g~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di 226 (366)
T 4fo4_A 167 I-EAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDI 226 (366)
T ss_dssp H-HHTCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHH
T ss_pred H-HcCCCEEEEecCCCCCCCcccccCcccchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHH
Confidence 5 689999999 22210 0112233333 358999987676 55543
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=94.94 E-value=0.12 Score=46.42 Aligned_cols=78 Identities=15% Similarity=0.086 Sum_probs=58.0
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHH-H
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRIL-K 181 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~-k 181 (243)
.|+.++++|+|.+++--. .-...|-++++.|.++|+++++.|+++=|.|. .++..+++.. .||. +
T Consensus 99 la~~A~~~Gadavlv~~P---------~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~----~~La~~ 165 (306)
T 1o5k_A 99 LVKQAEKLGANGVLVVTP---------YYNKPTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETA----ARIAAD 165 (306)
T ss_dssp HHHHHHHHTCSEEEEECC---------CSSCCCHHHHHHHHHHHHTTCSSCEEEEECHHHHSCCCCHHHH----HHHHHH
T ss_pred HHHHHHhcCCCEEEECCC---------CCCCCCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCCHHHH----HHHHHh
Confidence 467788999999876422 22234789999999999999999999999994 2344577766 4555 4
Q ss_pred HhCCCEEEeCCCC
Q 026125 182 EGGMDAIKLEGGS 194 (243)
Q Consensus 182 eaGAdaVKLEGg~ 194 (243)
.-...+||-..|.
T Consensus 166 ~pnIvgiKdssgd 178 (306)
T 1o5k_A 166 LKNVVGIXEANPD 178 (306)
T ss_dssp CTTEEEEEECCCC
T ss_pred CCCEEEEeCCCCC
Confidence 4568899998774
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.11 Score=46.18 Aligned_cols=78 Identities=19% Similarity=0.181 Sum_probs=57.8
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC-CCcCCHHHHHHHHHHHH-H
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG-TYESSTNQAVDTAVRIL-K 181 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg-sY~~s~e~Av~nA~Rl~-k 181 (243)
.|+.++++|+|.+++-- |.-...|-++++.|.++|+++++.|+++=|.|-- ++..+++.. .||. +
T Consensus 87 la~~A~~~Gadavlv~~---------P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~----~~La~~ 153 (294)
T 2ehh_A 87 LTAHAKEVGADGALVVV---------PYYNKPTQRGLYEHFKTVAQEVDIPIIIYNIPSRTCVEISVDTM----FKLASE 153 (294)
T ss_dssp HHHHHHHTTCSEEEEEC---------CCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHH----HHHHHH
T ss_pred HHHHHHhcCCCEEEECC---------CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCcCCCHHHH----HHHHhh
Confidence 46778899999987642 2223348899999999999999999999999952 344577766 4555 4
Q ss_pred HhCCCEEEeCCCC
Q 026125 182 EGGMDAIKLEGGS 194 (243)
Q Consensus 182 eaGAdaVKLEGg~ 194 (243)
.-...+||-..|.
T Consensus 154 ~pnivgiKds~gd 166 (294)
T 2ehh_A 154 CENIVASKESTPN 166 (294)
T ss_dssp CTTEEEEEECCSC
T ss_pred CCCEEEEEeCCCC
Confidence 3568899977664
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=94.87 E-value=0.11 Score=46.68 Aligned_cols=79 Identities=15% Similarity=0.225 Sum_probs=57.9
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHH-h
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE-G 183 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ke-a 183 (243)
|+.++++|+|.+++-=.. |......+-++++.|.++|+++++.|+++=|.|..++..+++.. .||.++ -
T Consensus 96 a~~A~~~Gadavlv~~Py------y~~~~~~s~~~l~~~f~~va~a~~lPiilYn~P~tg~~l~~~~~----~~La~~~p 165 (309)
T 3fkr_A 96 SLRAQQLGAAMVMAMPPY------HGATFRVPEAQIFEFYARVSDAIAIPIMVQDAPASGTALSAPFL----ARMAREIE 165 (309)
T ss_dssp HHHHHHTTCSEEEECCSC------BTTTBCCCHHHHHHHHHHHHHHCSSCEEEEECGGGCCCCCHHHH----HHHHHHST
T ss_pred HHHHHHcCCCEEEEcCCC------CccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCHHHH----HHHHhhCC
Confidence 678889999999865221 11112458899999999999999999999999964554566544 566643 5
Q ss_pred CCCEEEeCCC
Q 026125 184 GMDAIKLEGG 193 (243)
Q Consensus 184 GAdaVKLEGg 193 (243)
...+||.|.+
T Consensus 166 nIvgiK~~~~ 175 (309)
T 3fkr_A 166 QVAYFXIETP 175 (309)
T ss_dssp TEEEEEECSS
T ss_pred CEEEEECCCc
Confidence 6889998754
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.078 Score=47.44 Aligned_cols=78 Identities=22% Similarity=0.287 Sum_probs=58.1
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~ke 182 (243)
.|+.++++|+|.+++--. .-...|-++++.|.++|+++++.|+++=|.|. .++..+++.. .||.+-
T Consensus 99 la~~A~~~Gadavlv~~P---------~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~----~~La~~ 165 (301)
T 1xky_A 99 LTKKATEVGVDAVMLVAP---------YYNKPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTV----VRLSEI 165 (301)
T ss_dssp HHHHHHHTTCSEEEEECC---------CSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHH----HHHHTS
T ss_pred HHHHHHhcCCCEEEEcCC---------CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHH----HHHHcC
Confidence 467788999999876422 22234789999999999999999999999995 2344577766 455544
Q ss_pred hCCCEEEeCCCC
Q 026125 183 GGMDAIKLEGGS 194 (243)
Q Consensus 183 aGAdaVKLEGg~ 194 (243)
-...+||-..|.
T Consensus 166 pnIvgiKdssgd 177 (301)
T 1xky_A 166 ENIVAIKDAGGD 177 (301)
T ss_dssp TTEEEEEECSSC
T ss_pred CCEEEEEcCCCC
Confidence 568899998774
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.11 Score=46.87 Aligned_cols=77 Identities=21% Similarity=0.249 Sum_probs=57.6
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHH-HHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRI-LKE 182 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl-~ke 182 (243)
|+.++++|+|.+++-- |.-...+-++++.|.++|+++++.|+++=|.|- -++..+++.. .|| .+-
T Consensus 112 a~~A~~~Gadavlv~~---------P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~----~~L~a~~ 178 (315)
T 3na8_A 112 AQFAESLGAEAVMVLP---------ISYWKLNEAEVFQHYRAVGEAIGVPVMLYNNPGTSGIDMSVELI----LRIVREV 178 (315)
T ss_dssp HHHHHHTTCSEEEECC---------CCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHH----HHHHHHS
T ss_pred HHHHHhcCCCEEEECC---------CCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCcchhCcCCCHHHH----HHHHhcC
Confidence 6778999999998752 222345789999999999999999999999994 2344566654 455 344
Q ss_pred hCCCEEEeCCCC
Q 026125 183 GGMDAIKLEGGS 194 (243)
Q Consensus 183 aGAdaVKLEGg~ 194 (243)
-...+||-..|.
T Consensus 179 pnIvgiKdssgd 190 (315)
T 3na8_A 179 DNVTMVKESTGD 190 (315)
T ss_dssp TTEEEEEECSSC
T ss_pred CCEEEEECCCCC
Confidence 568899988774
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=94.85 E-value=0.21 Score=45.97 Aligned_cols=95 Identities=13% Similarity=0.166 Sum_probs=60.2
Q ss_pred CHHHHHHhhhC--CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhh-------hhccCCCCccCCHHHHHHHHHHHHcc
Q 026125 80 TLTHLRQKHKN--GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAM-------VVHGHDTTLPITLEEMLVHCRAVARG 150 (243)
Q Consensus 80 tv~~Lr~~kk~--g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgm-------v~lG~~dT~~vTldeMi~h~~aV~Rg 150 (243)
.+..++..++. +.|+.+.++.+...|+.++++|+|.|.||-.-|. .-+|.+ ++ +.+..++.+++.
T Consensus 181 ~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~~Gad~I~vg~~~G~~~~~~~~~~~g~p-----~~-~~l~~v~~~~~~ 254 (404)
T 1eep_A 181 IIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVP-----QI-TAICDVYEACNN 254 (404)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCC-----HH-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHhcCCCEEEECCCCCcCcCccccCCCCcc-----hH-HHHHHHHHHHhh
Confidence 34444444443 6677777889999999999999999988522221 011222 12 344445555555
Q ss_pred cCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 151 AKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 151 a~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
.+.| |++|= +- .+.+++ .+++ +.|||+|.+
T Consensus 255 ~~ip-Via~G---GI-~~~~d~----~~al-a~GAd~V~i 284 (404)
T 1eep_A 255 TNIC-IIADG---GI-RFSGDV----VKAI-AAGADSVMI 284 (404)
T ss_dssp SSCE-EEEES---CC-CSHHHH----HHHH-HHTCSEEEE
T ss_pred cCce-EEEEC---CC-CCHHHH----HHHH-HcCCCHHhh
Confidence 5555 67773 44 367777 4566 479999999
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=94.82 E-value=0.33 Score=40.27 Aligned_cols=83 Identities=11% Similarity=0.085 Sum_probs=55.1
Q ss_pred CcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCC--HHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCH
Q 026125 92 EPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPIT--LEEMLVHCRAVARGAKRPLLVGDLPFGTYESST 169 (243)
Q Consensus 92 ~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vT--ldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~ 169 (243)
..++++++++...+..++++|+|+|.++- .|+.+...-. ...-+...+.+++..+.| ++++= +. .|+
T Consensus 119 ~~~v~~~~~t~~e~~~~~~~G~d~i~~~~------~g~t~~~~~~~~~~~~~~~~~~~~~~~~ip-via~G---GI-~~~ 187 (223)
T 1y0e_A 119 NVEIMADIATVEEAKNAARLGFDYIGTTL------HGYTSYTQGQLLYQNDFQFLKDVLQSVDAK-VIAEG---NV-ITP 187 (223)
T ss_dssp TSEEEEECSSHHHHHHHHHTTCSEEECTT------TTSSTTSTTCCTTHHHHHHHHHHHHHCCSE-EEEES---SC-CSH
T ss_pred CceEEecCCCHHHHHHHHHcCCCEEEeCC------CcCcCCCCCCCCCcccHHHHHHHHhhCCCC-EEEec---CC-CCH
Confidence 46678899999999999999999986542 2332221110 222355667777766555 67763 33 366
Q ss_pred HHHHHHHHHHHHHhCCCEEEe
Q 026125 170 NQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 170 e~Av~nA~Rl~keaGAdaVKL 190 (243)
+++ .+++ +.|||+|-+
T Consensus 188 ~~~----~~~~-~~Gad~v~v 203 (223)
T 1y0e_A 188 DMY----KRVM-DLGVHCSVV 203 (223)
T ss_dssp HHH----HHHH-HTTCSEEEE
T ss_pred HHH----HHHH-HcCCCEEEE
Confidence 766 5666 579999988
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.34 Score=44.67 Aligned_cols=116 Identities=22% Similarity=0.373 Sum_probs=68.0
Q ss_pred HHHhhhCCC-c-EEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCC
Q 026125 84 LRQKHKNGE-P-ITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (243)
Q Consensus 84 Lr~~kk~g~-~-ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmP 161 (243)
+++.++.+. | .+.+.+.+...+..+.++|+|.|.+.-+ +|.+ +.++...+.+++..+.++++.+
T Consensus 87 I~~vk~~~~~pvga~ig~~~~e~a~~l~eaGad~I~ld~a-----~G~~-------~~~~~~i~~i~~~~~~~Vivg~-- 152 (361)
T 3khj_A 87 VLKVKNSGGLRVGAAIGVNEIERAKLLVEAGVDVIVLDSA-----HGHS-------LNIIRTLKEIKSKMNIDVIVGN-- 152 (361)
T ss_dssp HHHHHHTTCCCCEEEECTTCHHHHHHHHHTTCSEEEECCS-----CCSB-------HHHHHHHHHHHHHCCCEEEEEE--
T ss_pred HHHHHhccCceEEEEeCCCHHHHHHHHHHcCcCeEEEeCC-----CCCc-------HHHHHHHHHHHHhcCCcEEEcc--
Confidence 344444443 3 3455556677888899999999976522 2322 3445556677776666655433
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCEEEeC--CCC-----------CchHHHHHHHH----HcCCceeeccCC-ccccc
Q 026125 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLE--GGS-----------PSRITAARGIV----EAGIAVMGHVGL-TPQAI 222 (243)
Q Consensus 162 fgsY~~s~e~Av~nA~Rl~keaGAdaVKLE--Gg~-----------~~~~~~i~~L~----~~GIPV~GHiGL-tPQ~~ 222 (243)
- .+++++ .+++ ++|||+|++- +|. .-....+..+. +.+|||++==|+ +|..+
T Consensus 153 ---v-~t~e~A----~~l~-~aGaD~I~VG~~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIA~GGI~~~~di 222 (361)
T 3khj_A 153 ---V-VTEEAT----KELI-ENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDI 222 (361)
T ss_dssp ---E-CSHHHH----HHHH-HTTCSEEEECSSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHHTCCEEEESCCCSHHHH
T ss_pred ---C-CCHHHH----HHHH-HcCcCEEEEecCCCcCCCcccccCCCCCcHHHHHHHHHHHhhcCCeEEEECCCCCHHHH
Confidence 2 466766 4555 6999999992 111 01122233332 248999987777 56554
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.14 Score=46.91 Aligned_cols=97 Identities=20% Similarity=0.243 Sum_probs=58.4
Q ss_pred CHHHHHHhhhC--CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhh-----hhccCCCCccCCHHHHHHHHHHHHcccC
Q 026125 80 TLTHLRQKHKN--GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAM-----VVHGHDTTLPITLEEMLVHCRAVARGAK 152 (243)
Q Consensus 80 tv~~Lr~~kk~--g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgm-----v~lG~~dT~~vTldeMi~h~~aV~Rga~ 152 (243)
.+..+++.++. +-|+.+-++-+...|+.+.++|+|.|.||-.-|. ...|. .++.-+.+..+..+++..+
T Consensus 148 ~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~aGaD~I~v~~g~G~~~~~r~~~g~----~~p~~~~l~~v~~~~~~~~ 223 (351)
T 2c6q_A 148 FVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVGIGPGSVCTTRKKTGV----GYPQLSAVMECADAAHGLK 223 (351)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTBCHHHHHCB----CCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCcCccccCCC----CccHHHHHHHHHHHHhhcC
Confidence 34455555444 5677777889999999999999999988632221 11111 1111222222233333344
Q ss_pred CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 153 ~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
.| |++| |+. .+..++ .+.+ ..||++|.+
T Consensus 224 ip-vIa~---GGI-~~g~di----~kAl-alGA~~V~v 251 (351)
T 2c6q_A 224 GH-IISD---GGC-SCPGDV----AKAF-GAGADFVML 251 (351)
T ss_dssp CE-EEEE---SCC-CSHHHH----HHHH-HTTCSEEEE
T ss_pred Cc-EEEe---CCC-CCHHHH----HHHH-HcCCCceec
Confidence 44 7787 455 477887 4667 589999988
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.14 Score=46.35 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=58.3
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHH-
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILK- 181 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~k- 181 (243)
.|+.++++|+|.+++-- |.-...+-++++.|.++|+++++.|+++=|.|- -++..+++.. .||.+
T Consensus 109 la~~A~~~Gadavlv~~---------P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~----~~La~~ 175 (315)
T 3si9_A 109 LAKHAEKAGADAVLVVT---------PYYNRPNQRGLYTHFSSIAKAISIPIIIYNIPSRSVIDMAVETM----RDLCRD 175 (315)
T ss_dssp HHHHHHHTTCSEEEEEC---------CCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHH----HHHHHH
T ss_pred HHHHHHhcCCCEEEECC---------CCCCCCCHHHHHHHHHHHHHcCCCCEEEEeCchhhCCCCCHHHH----HHHHhh
Confidence 36678899999987642 222334789999999999999999999999994 2344576655 56665
Q ss_pred HhCCCEEEeCCCC
Q 026125 182 EGGMDAIKLEGGS 194 (243)
Q Consensus 182 eaGAdaVKLEGg~ 194 (243)
--...+||-..|.
T Consensus 176 ~pnIvgiKdssgd 188 (315)
T 3si9_A 176 FKNIIGVKDATGK 188 (315)
T ss_dssp CTTEEEEEECSCC
T ss_pred CCCEEEEEeCCCC
Confidence 3568899988775
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.11 Score=46.31 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=58.6
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHHH-
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKE- 182 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~ke- 182 (243)
|+.++++|+|.+++-- |.-...+-++++.|.++|+++++.|+++=|.|- -++..+++.. .||.+.
T Consensus 96 a~~a~~~Gadavlv~~---------P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~----~~La~~~ 162 (301)
T 3m5v_A 96 AKFAKEHGADGILSVA---------PYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTI----IKLFRDC 162 (301)
T ss_dssp HHHHHHTTCSEEEEEC---------CCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHH----HHHHHHC
T ss_pred HHHHHHcCCCEEEEcC---------CCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCCHHHH----HHHHhcC
Confidence 6778899999997642 222234779999999999999999999999995 2344677766 456665
Q ss_pred hCCCEEEeCCCC
Q 026125 183 GGMDAIKLEGGS 194 (243)
Q Consensus 183 aGAdaVKLEGg~ 194 (243)
-...+||-..|.
T Consensus 163 pnivgiKdssgd 174 (301)
T 3m5v_A 163 ENIYGVKEASGN 174 (301)
T ss_dssp TTEEEEEECSSC
T ss_pred CCEEEEEeCCCC
Confidence 578999998774
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.13 Score=49.21 Aligned_cols=100 Identities=29% Similarity=0.421 Sum_probs=60.5
Q ss_pred CHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 101 DYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 101 D~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
+...|..+.++|+|+|.+.-+- |+ .+..+...+.+++..+...|++ |+. .+.+++ .+++
T Consensus 232 ~~~~a~~l~~aG~d~I~id~a~-----g~-------~~~~~~~i~~ir~~~p~~~Vi~----g~v-~t~e~a----~~l~ 290 (496)
T 4fxs_A 232 NEERVKALVEAGVDVLLIDSSH-----GH-------SEGVLQRIRETRAAYPHLEIIG----GNV-ATAEGA----RALI 290 (496)
T ss_dssp CHHHHHHHHHTTCSEEEEECSC-----TT-------SHHHHHHHHHHHHHCTTCCEEE----EEE-CSHHHH----HHHH
T ss_pred hHHHHHHHHhccCceEEecccc-----cc-------chHHHHHHHHHHHHCCCceEEE----ccc-CcHHHH----HHHH
Confidence 4677888889999999876332 21 1344566677877775444554 233 466665 4455
Q ss_pred HHhCCCEEEeCCCCCc-------------hHHHHHHHH----HcCCceeeccCC-ccccc
Q 026125 181 KEGGMDAIKLEGGSPS-------------RITAARGIV----EAGIAVMGHVGL-TPQAI 222 (243)
Q Consensus 181 keaGAdaVKLEGg~~~-------------~~~~i~~L~----~~GIPV~GHiGL-tPQ~~ 222 (243)
++|||+|++.+|... ....+..+. +.+|||++==|+ +|..+
T Consensus 291 -~aGaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di 349 (496)
T 4fxs_A 291 -EAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDI 349 (496)
T ss_dssp -HHTCSEEEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHH
T ss_pred -HhCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHH
Confidence 699999998522111 112223333 458999987666 35443
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.12 Score=45.97 Aligned_cols=78 Identities=21% Similarity=0.251 Sum_probs=57.9
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHH-
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILK- 181 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~k- 181 (243)
.|+.++++|+|.+++--. .-...|-++++.|.++|+++++.|+++=|.|. -++..+++.. .|+.+
T Consensus 87 la~~A~~~Gadavlv~~P---------~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~----~~La~~ 153 (292)
T 2vc6_A 87 FVRHAQNAGADGVLIVSP---------YYNKPTQEGIYQHFKAIDAASTIPIIVYNIPGRSAIEIHVETL----ARIFED 153 (292)
T ss_dssp HHHHHHHTTCSEEEEECC---------CSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHH----HHHHHH
T ss_pred HHHHHHHcCCCEEEEcCC---------CCCCCCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCCHHHH----HHHHhh
Confidence 467788999999876422 22234789999999999999999999999994 2333577766 45554
Q ss_pred HhCCCEEEeCCCC
Q 026125 182 EGGMDAIKLEGGS 194 (243)
Q Consensus 182 eaGAdaVKLEGg~ 194 (243)
--...+||-..|.
T Consensus 154 ~pnIvgiK~s~gd 166 (292)
T 2vc6_A 154 CPNVKGVXDATGN 166 (292)
T ss_dssp CTTEEEEEECSCC
T ss_pred CCCEEEEecCCCC
Confidence 3568899988775
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.4 Score=45.45 Aligned_cols=101 Identities=15% Similarity=0.157 Sum_probs=63.4
Q ss_pred HHHHHhhhC--CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCC-CccCCHHHHHHHHHHHHcccCCCcEEe
Q 026125 82 THLRQKHKN--GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDT-TLPITLEEMLVHCRAVARGAKRPLLVG 158 (243)
Q Consensus 82 ~~Lr~~kk~--g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~d-T~~vTldeMi~h~~aV~Rga~~~fvVa 158 (243)
..+++.++. +-|+..-++-+...|+.++++|+|.|.||-..|....-... ...+....-+..++.+++..+.| |++
T Consensus 285 ~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aGad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ip-Via 363 (514)
T 1jcn_A 285 AMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVP-IIA 363 (514)
T ss_dssp HHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGTCC-EEE
T ss_pred HHHHHHHHhCCCCceEecccchHHHHHHHHHcCCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhCCCC-EEE
Confidence 344444444 56766668899999999999999999885433321100000 01111333456677888877666 677
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEG 192 (243)
| |+. .+++++ .+.+ +.|||+|-+=.
T Consensus 364 ~---GGI-~~~~di----~kal-a~GAd~V~iG~ 388 (514)
T 1jcn_A 364 D---GGI-QTVGHV----VKAL-ALGASTVMMGS 388 (514)
T ss_dssp E---SCC-CSHHHH----HHHH-HTTCSEEEEST
T ss_pred E---CCC-CCHHHH----HHHH-HcCCCeeeECH
Confidence 7 445 367777 4566 47999999844
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=94.69 E-value=0.098 Score=46.45 Aligned_cols=77 Identities=23% Similarity=0.258 Sum_probs=57.7
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHHHh
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKEG 183 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~kea 183 (243)
|+.++++|+|.+++-= |.-...+-++++.|.++|+++++.|+++=|.|- .++..+++.. .||.+--
T Consensus 89 a~~a~~~Gadavlv~~---------P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~----~~La~~p 155 (291)
T 3tak_A 89 TKAAKDLGADAALLVT---------PYYNKPTQEGLYQHYKAIAEAVELPLILYNVPGRTGVDLSNDTA----VRLAEIP 155 (291)
T ss_dssp HHHHHHHTCSEEEEEC---------CCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHH----HHHTTST
T ss_pred HHHHHhcCCCEEEEcC---------CCCCCCCHHHHHHHHHHHHHhcCCCEEEEecccccCCCCCHHHH----HHHHcCC
Confidence 6778899999997642 222234789999999999999999999999985 2344677765 4555445
Q ss_pred CCCEEEeCCCC
Q 026125 184 GMDAIKLEGGS 194 (243)
Q Consensus 184 GAdaVKLEGg~ 194 (243)
...+||-..|.
T Consensus 156 nivgiK~ssgd 166 (291)
T 3tak_A 156 NIVGIKDATGD 166 (291)
T ss_dssp TEEEEEECSCC
T ss_pred CEEEEEeCCCC
Confidence 68899988774
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.4 Score=44.62 Aligned_cols=97 Identities=16% Similarity=0.172 Sum_probs=64.5
Q ss_pred CCCHHHHHHhhhC-CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 78 RVTLTHLRQKHKN-GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 78 ~~tv~~Lr~~kk~-g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
..++.+++..++. +.|+++=.+.+...|+.++++|+|.|.|+..-|- ..|..+.+++-+..-.++|. +...|
T Consensus 238 ~~~~~~i~~lr~~~~~PvivKgv~~~e~A~~a~~aGad~I~vs~~ggr----~~~~g~~~~~~l~~v~~av~---~~ipV 310 (392)
T 2nzl_A 238 SISWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGAR----QLDGVPATIDVLPEIVEAVE---GKVEV 310 (392)
T ss_dssp TCCHHHHHHHC--CCSCEEEEEECCHHHHHHHHHTTCCEEEECCGGGT----SSTTCCCHHHHHHHHHHHHT---TSSEE
T ss_pred HHHHHHHHHHHHhhCCCEEEEecCCHHHHHHHHHcCCCEEEeCCCCCC----cCCCCcChHHHHHHHHHHcC---CCCEE
Confidence 3577777776543 5687776778899999999999999988543331 23555666655444333332 13347
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
++| |+. .+.+++ .+.+ +.|||+|.+
T Consensus 311 ia~---GGI-~~g~Dv----~kal-alGAd~V~i 335 (392)
T 2nzl_A 311 FLD---GGV-RKGTDV----LKAL-ALGAKAVFV 335 (392)
T ss_dssp EEC---SSC-CSHHHH----HHHH-HTTCSEEEE
T ss_pred EEE---CCC-CCHHHH----HHHH-HhCCCeeEE
Confidence 887 455 478888 4667 489999998
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=94.61 E-value=0.22 Score=46.24 Aligned_cols=98 Identities=13% Similarity=0.134 Sum_probs=59.3
Q ss_pred HHHHhhhC--CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccC--CCCccCCHHHHHHHHHHHHcccCCCcEEe
Q 026125 83 HLRQKHKN--GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGH--DTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (243)
Q Consensus 83 ~Lr~~kk~--g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~--~dT~~vTldeMi~h~~aV~Rga~~~fvVa 158 (243)
.+++.++. +-++.+-++-+...|+.++++|+|.|.||-.-|...-+. .+. .+..-+.+..+..+++..+.| |++
T Consensus 139 ~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aGAD~I~vG~gpGs~~~tr~~~g~-g~p~~~~l~~v~~~~~~~~iP-VIA 216 (366)
T 4fo4_A 139 RIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGV-GVPQITAIADAAGVANEYGIP-VIA 216 (366)
T ss_dssp HHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCC-CCCHHHHHHHHHHHHGGGTCC-EEE
T ss_pred HHHHHHHhcCCCceEeeeeCCHHHHHHHHHcCCCEEEEecCCCCCCCcccccCc-ccchHHHHHHHHHHHhhcCCe-EEE
Confidence 34444443 456666689999999999999999999863222211000 001 122223455555555666666 677
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
|= +. .+++++ .+.+ +.|||+|.+=
T Consensus 217 ~G---GI-~~~~di----~kal-a~GAd~V~vG 240 (366)
T 4fo4_A 217 DG---GI-RFSGDI----SKAI-AAGASCVMVG 240 (366)
T ss_dssp ES---CC-CSHHHH----HHHH-HTTCSEEEES
T ss_pred eC---CC-CCHHHH----HHHH-HcCCCEEEEC
Confidence 74 44 356766 4566 4899999983
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=94.59 E-value=0.14 Score=45.92 Aligned_cols=91 Identities=24% Similarity=0.382 Sum_probs=59.0
Q ss_pred HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCC--------CCCC---cCC---HHHH
Q 026125 107 HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP--------FGTY---ESS---TNQA 172 (243)
Q Consensus 107 iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmP--------fgsY---~~s---~e~A 172 (243)
-..++|++.|-+-|. +||....++++++ ..| |++-+. +|+| ..+ .+++
T Consensus 102 rl~kaGa~aVklEgg----------------~e~~~~I~al~~a-gip-V~gHiGLtPq~v~~~ggf~v~grt~~~a~~~ 163 (264)
T 1m3u_A 102 TVMRAGANMVKIEGG----------------EWLVETVQMLTER-AVP-VCGHLGLTPQSVNIFGGYKVQGRGDEAGDQL 163 (264)
T ss_dssp HHHHTTCSEEECCCS----------------GGGHHHHHHHHHT-TCC-EEEEEESCGGGHHHHTSSCCCCCSHHHHHHH
T ss_pred HHHHcCCCEEEECCc----------------HHHHHHHHHHHHC-CCC-eEeeecCCceeecccCCeEEEeCCHHHHHHH
Confidence 345599999987765 3778888888763 355 331110 1234 123 3678
Q ss_pred HHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHc-CCceeeccCCccc
Q 026125 173 VDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGHVGLTPQ 220 (243)
Q Consensus 173 v~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~GHiGLtPQ 220 (243)
++-|..+. |+||++|.+|+-.. +.+++++++ .|||+| ||=-|.
T Consensus 164 i~rA~a~~-eAGA~~ivlE~vp~---~~a~~it~~l~iP~ig-IGag~~ 207 (264)
T 1m3u_A 164 LSDALALE-AAGAQLLVLECVPV---ELAKRITEALAIPVIG-IGAGNV 207 (264)
T ss_dssp HHHHHHHH-HHTCCEEEEESCCH---HHHHHHHHHCSSCEEE-ESSCTT
T ss_pred HHHHHHHH-HCCCcEEEEecCCH---HHHHHHHHhCCCCEEE-eCCCCC
Confidence 88886655 79999999999642 345667654 699998 554443
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.23 Score=47.39 Aligned_cols=86 Identities=17% Similarity=0.181 Sum_probs=55.2
Q ss_pred CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhh-----hccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCC
Q 026125 91 GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMV-----VHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTY 165 (243)
Q Consensus 91 g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv-----~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY 165 (243)
+.|+.+-++-+...|+.+.++|+|.|.||-.-|.. ..|. +.-++ +.+..+...++..+.| ||+|= +.
T Consensus 270 ~~~Vi~g~v~t~e~a~~l~~aGaD~I~vg~g~Gs~~~t~~~~g~---g~p~~-~~l~~v~~~~~~~~iP-VIa~G---GI 341 (490)
T 4avf_A 270 DVQVIGGNIATAEAAKALAEAGADAVKVGIGPGSICTTRIVAGV---GVPQI-SAIANVAAALEGTGVP-LIADG---GI 341 (490)
T ss_dssp TSEEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHTCB---CCCHH-HHHHHHHHHHTTTTCC-EEEES---CC
T ss_pred CceEEEeeeCcHHHHHHHHHcCCCEEEECCCCCcCCCccccCCC---CccHH-HHHHHHHHHhccCCCc-EEEeC---CC
Confidence 45777778999999999999999999986322221 1121 11123 3344444444445555 78874 34
Q ss_pred cCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 166 ESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 166 ~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
.+++++ .+.+ ++||++|.+
T Consensus 342 -~~~~di----~kal-~~GAd~V~v 360 (490)
T 4avf_A 342 -RFSGDL----AKAM-VAGAYCVMM 360 (490)
T ss_dssp -CSHHHH----HHHH-HHTCSEEEE
T ss_pred -CCHHHH----HHHH-HcCCCeeee
Confidence 367777 4566 479999998
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=94.54 E-value=0.099 Score=47.17 Aligned_cols=78 Identities=23% Similarity=0.243 Sum_probs=58.2
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~ke 182 (243)
.|+.++++|+|.+++-- |.-...+-++++.|.++|+++++.|+++=|.|- -++..+++.. .||.+-
T Consensus 110 la~~A~~~Gadavlv~~---------P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~----~~La~~ 176 (314)
T 3qze_A 110 LTEAAKSGGADACLLVT---------PYYNKPTQEGMYQHFRHIAEAVAIPQILYNVPGRTSCDMLPETV----ERLSKV 176 (314)
T ss_dssp HHHHHHHTTCSEEEEEC---------CCSSCCCHHHHHHHHHHHHHHSCSCEEEEECHHHHSCCCCHHHH----HHHHTS
T ss_pred HHHHHHHcCCCEEEEcC---------CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHH----HHHhcC
Confidence 36778899999987652 222245789999999999999999999999993 2344677776 455544
Q ss_pred hCCCEEEeCCCC
Q 026125 183 GGMDAIKLEGGS 194 (243)
Q Consensus 183 aGAdaVKLEGg~ 194 (243)
-...+||-..|.
T Consensus 177 pnIvgiKdssgd 188 (314)
T 3qze_A 177 PNIIGIKEATGD 188 (314)
T ss_dssp TTEEEEEECSCC
T ss_pred CCEEEEEcCCCC
Confidence 568899988774
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=94.53 E-value=0.063 Score=47.81 Aligned_cols=77 Identities=13% Similarity=0.148 Sum_probs=58.3
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHHHh
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKEG 183 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~kea 183 (243)
|+.++++|+|.+++-= |.-...+-++++.|.++|+++++.|+++=|.|- .++..+++.. .||.+--
T Consensus 90 a~~a~~~Gadavlv~~---------P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~----~~La~~p 156 (292)
T 3daq_A 90 SIQAKALGADAIMLIT---------PYYNKTNQRGLVKHFEAIADAVKLPVVLYNVPSRTNMTIEPETV----EILSQHP 156 (292)
T ss_dssp HHHHHHHTCSEEEEEC---------CCSSCCCHHHHHHHHHHHHHHHCSCEEEEECHHHHSCCCCHHHH----HHHHTST
T ss_pred HHHHHHcCCCEEEECC---------CCCCCCCHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCHHHH----HHHhcCC
Confidence 6678899999987642 222334789999999999999999999999993 2444677776 4555445
Q ss_pred CCCEEEeCCCC
Q 026125 184 GMDAIKLEGGS 194 (243)
Q Consensus 184 GAdaVKLEGg~ 194 (243)
...+||-..|.
T Consensus 157 nivgiK~ssgd 167 (292)
T 3daq_A 157 YIVALKDATND 167 (292)
T ss_dssp TEEEEEECCCC
T ss_pred CEEEEEeCCCC
Confidence 68899998875
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.23 Score=47.53 Aligned_cols=86 Identities=16% Similarity=0.161 Sum_probs=55.4
Q ss_pred CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhh-----hccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCC
Q 026125 91 GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMV-----VHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTY 165 (243)
Q Consensus 91 g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv-----~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY 165 (243)
+.|+.+-++-+...|+.+.++|+|.|.||-.-|.. ..|.. ...-+.+..+...++..+.| ||+|= +.
T Consensus 272 ~~~Vi~g~v~t~e~a~~l~~aGaD~I~Vg~g~Gs~~~tr~~~g~g----~p~~~~i~~v~~~~~~~~iP-VIa~G---GI 343 (496)
T 4fxs_A 272 HLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVG----VPQITAIADAAGVANEYGIP-VIADG---GI 343 (496)
T ss_dssp TCCEEEEEECSHHHHHHHHHHTCSEEEECSSCCTTBCHHHHHCCC----CCHHHHHHHHHHHHGGGTCC-EEEES---CC
T ss_pred CceEEEcccCcHHHHHHHHHhCCCEEEECCCCCcCcccccccCCC----ccHHHHHHHHHHHhccCCCe-EEEeC---CC
Confidence 56777778999999999999999999987332221 11211 12223344444444445555 78874 34
Q ss_pred cCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 166 ESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 166 ~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
.+++++ .+.+ +.|||+|.+
T Consensus 344 -~~~~di----~kal-a~GAd~V~i 362 (496)
T 4fxs_A 344 -RFSGDI----SKAI-AAGASCVMV 362 (496)
T ss_dssp -CSHHHH----HHHH-HTTCSEEEE
T ss_pred -CCHHHH----HHHH-HcCCCeEEe
Confidence 367887 4556 479999998
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.39 Score=46.26 Aligned_cols=101 Identities=10% Similarity=0.113 Sum_probs=65.1
Q ss_pred CCCHHHHHHhhh-CCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHc-c-cCCC
Q 026125 78 RVTLTHLRQKHK-NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR-G-AKRP 154 (243)
Q Consensus 78 ~~tv~~Lr~~kk-~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~R-g-a~~~ 154 (243)
..++.+++..++ -+.|+++=.+-+...|+.++++|+|.|.|+..-|... |..+-+++-+....+++.. + .+..
T Consensus 329 ~~~~~~i~~lr~~~~~PvivKgv~~~e~A~~a~~aGad~I~vs~hgG~~~----d~~~~~~~~l~~v~~~v~~~~~~~~i 404 (511)
T 1kbi_A 329 SLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQL----DFSRAPIEVLAETMPILEQRNLKDKL 404 (511)
T ss_dssp TCCHHHHHHHHHHCSSCEEEEEECSHHHHHHHHHTTCSEEEECCTTTTSS----TTCCCHHHHHHHHHHHHHTTTCBTTB
T ss_pred HhHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHcCCCEEEEcCCCCccC----CCCCchHHHHHHHHHHHHhhccCCCc
Confidence 356777766654 3678887666778899999999999998865444322 3344455544444444431 1 1234
Q ss_pred cEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 155 LLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 155 fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
.|++|= +. .+.+++ .+.+ ..|||+|.+-
T Consensus 405 pVia~G---GI-~~g~Dv----~kaL-alGAdaV~iG 432 (511)
T 1kbi_A 405 EVFVDG---GV-RRGTDV----LKAL-CLGAKGVGLG 432 (511)
T ss_dssp EEEEES---SC-CSHHHH----HHHH-HHTCSEEEEC
T ss_pred EEEEEC---CC-CCHHHH----HHHH-HcCCCEEEEC
Confidence 478884 44 477888 4566 3799999983
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.33 Score=42.63 Aligned_cols=93 Identities=14% Similarity=0.075 Sum_probs=56.0
Q ss_pred EEEEecCCH----HHHHHHHHcCCC-EEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCC
Q 026125 94 ITMVTAYDY----PSAVHLDSAGID-ICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESS 168 (243)
Q Consensus 94 ItmlTAYD~----~sA~iae~AGiD-iILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s 168 (243)
++-+...+. ..|+.++++|+| +|-+.-|-.+. -|. +...-+.|.+...+++|++.++.|+++ =+.- .+ +
T Consensus 97 ~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~-~g~-~~~g~~~e~~~~iv~~vr~~~~~Pv~v-Ki~~-~~--~ 170 (311)
T 1jub_A 97 FFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNV-PGE-PQLAYDFEATEKLLKEVFTFFTKPLGV-KLPP-YF--D 170 (311)
T ss_dssp EEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCS-SSC-CCGGGCHHHHHHHHHHHTTTCCSCEEE-EECC-CC--S
T ss_pred EEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCCC-CCc-ccccCCHHHHHHHHHHHHHhcCCCEEE-EECC-CC--C
Confidence 444555552 346677889999 88654332222 221 222336777778889999888777554 3322 12 5
Q ss_pred HHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 169 TNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 169 ~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
.++..+.|.++ +++|+|+|.+-+.
T Consensus 171 ~~~~~~~a~~~-~~~G~d~i~v~~~ 194 (311)
T 1jub_A 171 LVHFDIMAEIL-NQFPLTYVNSVNS 194 (311)
T ss_dssp HHHHHHHHHHH-TTSCCCEEEECCC
T ss_pred HHHHHHHHHHH-HHcCCcEEEecCC
Confidence 66665555544 4799999987653
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.21 Score=46.17 Aligned_cols=95 Identities=14% Similarity=0.132 Sum_probs=62.3
Q ss_pred CCHHHHHHhhh-CCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 79 VTLTHLRQKHK-NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 79 ~tv~~Lr~~kk-~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
.++..+++.++ -+.|+.+-.+.+...|+.+.++|+|.|.|+..-+... |..+.+++-+ +.|++..+.| |+
T Consensus 212 ~~~~~i~~i~~~~~~Pv~vkgv~t~e~a~~a~~aGad~I~vs~~gg~~~----d~~~~~~~~l----~~v~~~~~~p-Vi 282 (380)
T 1p4c_A 212 FNWEALRWLRDLWPHKLLVKGLLSAEDADRCIAEGADGVILSNHGGRQL----DCAISPMEVL----AQSVAKTGKP-VL 282 (380)
T ss_dssp CCHHHHHHHHHHCCSEEEEEEECCHHHHHHHHHTTCSEEEECCGGGTSC----TTCCCGGGTH----HHHHHHHCSC-EE
T ss_pred ccHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHcCCCEEEEcCCCCCcC----CCCcCHHHHH----HHHHHHcCCe-EE
Confidence 45666665433 3578887778899999999999999998865433321 2333344332 3444445555 67
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
+|= +. .+.+++ .+++. .||++|-+-
T Consensus 283 a~G---GI-~~~~dv----~kal~-~GAdaV~iG 307 (380)
T 1p4c_A 283 IDS---GF-RRGSDI----VKALA-LGAEAVLLG 307 (380)
T ss_dssp ECS---SC-CSHHHH----HHHHH-TTCSCEEES
T ss_pred EEC---CC-CCHHHH----HHHHH-hCCcHhheh
Confidence 774 44 367777 46674 899999883
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.1 Score=46.60 Aligned_cols=78 Identities=18% Similarity=0.176 Sum_probs=58.0
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC-CCcCCHHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG-TYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg-sY~~s~e~Av~nA~Rl~ke 182 (243)
.|+.++++|+|.+++--. .-...|-++++.|.++|+++++.|+++=|.|-- ++..+++.. .||.+-
T Consensus 87 la~~A~~~Gadavlv~~P---------~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~----~~La~~ 153 (297)
T 2rfg_A 87 YAQHAQQAGADAVLCVAG---------YYNRPSQEGLYQHFKMVHDAIDIPIIVYNIPPRAVVDIKPETM----ARLAAL 153 (297)
T ss_dssp HHHHHHHHTCSEEEECCC---------TTTCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHH----HHHHTS
T ss_pred HHHHHHhcCCCEEEEcCC---------CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHH----HHHHcC
Confidence 467788999999986522 222347899999999999999999999999952 344577766 455544
Q ss_pred hCCCEEEeCCCC
Q 026125 183 GGMDAIKLEGGS 194 (243)
Q Consensus 183 aGAdaVKLEGg~ 194 (243)
-...+||-..|.
T Consensus 154 pnIvgiKds~gd 165 (297)
T 2rfg_A 154 PRIVGVKDATTD 165 (297)
T ss_dssp TTEEEEEECSCC
T ss_pred CCEEEEEeCCCC
Confidence 568899987664
|
| >2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.15 Score=46.73 Aligned_cols=78 Identities=15% Similarity=0.222 Sum_probs=57.8
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCCCcc-CCHHHHHHHHHHHHc-ccCCCcEEeeCCCCCCcCCHHHHHHHHHHH-
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLP-ITLEEMLVHCRAVAR-GAKRPLLVGDLPFGTYESSTNQAVDTAVRI- 179 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~-vTldeMi~h~~aV~R-ga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl- 179 (243)
..|+.++++|+|.+++--. .-.. .+-++++.|.++|++ +++.|+++=|.|..++..+++.. .||
T Consensus 109 ~la~~A~~~Gadavlv~~P---------~y~~~~s~~~l~~~f~~IA~aa~~lPiilYn~P~tg~~l~~e~~----~~L~ 175 (344)
T 2hmc_A 109 AHAVHAQKVGAKGLMVIPR---------VLSRGSVIAAQKAHFKAILSAAPEIPAVIYNSPYYGFATRADLF----FALR 175 (344)
T ss_dssp HHHHHHHHHTCSEEEECCC---------CSSSTTCHHHHHHHHHHHHHHSTTSCEEEEEBGGGTBCCCHHHH----HHHH
T ss_pred HHHHHHHhcCCCEEEECCC---------ccCCCCCHHHHHHHHHHHHhhCCCCcEEEEecCccCCCcCHHHH----HHHH
Confidence 3577788999999987522 2223 578999999999999 89999999999933444577766 345
Q ss_pred HHHhCCCEEEeCCC
Q 026125 180 LKEGGMDAIKLEGG 193 (243)
Q Consensus 180 ~keaGAdaVKLEGg 193 (243)
.+--...+||-..|
T Consensus 176 a~~pnIvGiKdssg 189 (344)
T 2hmc_A 176 AEHKNLVGFKEFGG 189 (344)
T ss_dssp HHCTTEEEEEECSC
T ss_pred hcCCCEEEEEcCCC
Confidence 44456889998877
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.16 Score=45.14 Aligned_cols=78 Identities=13% Similarity=0.107 Sum_probs=58.1
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC-CCcCCHHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG-TYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg-sY~~s~e~Av~nA~Rl~ke 182 (243)
.|+.++++|+|.+++-- |.-...+-++++.|.++|+++++.|+++=|.|-- ++..+++.. .||.+.
T Consensus 91 la~~a~~~Gadavlv~~---------P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~----~~La~~ 157 (293)
T 1f6k_A 91 LGKYATELGYDCLSAVT---------PFYYKFSFPEIKHYYDTIIAETGSNMIVYSIPFLTGVNMGIEQF----GELYKN 157 (293)
T ss_dssp HHHHHHHHTCSEEEEEC---------CCSSCCCHHHHHHHHHHHHHHHCCCEEEEECHHHHCCCCCHHHH----HHHHTS
T ss_pred HHHHHHhcCCCEEEECC---------CCCCCCCHHHHHHHHHHHHHhCCCCEEEEECccccCcCCCHHHH----HHHhcC
Confidence 46778899999987642 2223346899999999999999999999999842 344577766 455544
Q ss_pred hCCCEEEeCCCC
Q 026125 183 GGMDAIKLEGGS 194 (243)
Q Consensus 183 aGAdaVKLEGg~ 194 (243)
-...+||-..|.
T Consensus 158 pnIvgiK~s~gd 169 (293)
T 1f6k_A 158 PKVLGVKFTAGD 169 (293)
T ss_dssp TTEEEEEECSCC
T ss_pred CCEEEEEECCCC
Confidence 568899998875
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.18 Score=44.66 Aligned_cols=93 Identities=16% Similarity=0.168 Sum_probs=63.7
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC-CCcCCHHHHHHHHHHHH-H
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG-TYESSTNQAVDTAVRIL-K 181 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg-sY~~s~e~Av~nA~Rl~-k 181 (243)
.|+.++++|+|.+++-- |.-...|-++++.|.++|+++++.|+++=|.|-- ++..+++.. .||. +
T Consensus 87 la~~a~~~Gadavlv~~---------P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~----~~La~~ 153 (289)
T 2yxg_A 87 LSVFAEDVGADAVLSIT---------PYYNKPTQEGLRKHFGKVAESINLPIVLYNVPSRTAVNLEPKTV----KLLAEE 153 (289)
T ss_dssp HHHHHHHHTCSEEEEEC---------CCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHH----HHHHHH
T ss_pred HHHHHHhcCCCEEEECC---------CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHH----HHHHHh
Confidence 46778899999987642 2222347899999999999999999999999952 344577766 4555 4
Q ss_pred HhCCCEEEeCCCCCchHHHHHHHHHc-CCcee
Q 026125 182 EGGMDAIKLEGGSPSRITAARGIVEA-GIAVM 212 (243)
Q Consensus 182 eaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~ 212 (243)
.-...+||-..|.. .. +..+.+. ++.|.
T Consensus 154 ~pnivgiK~s~gd~--~~-~~~~~~~~~f~v~ 182 (289)
T 2yxg_A 154 YSNISAVKEANPNL--SQ-VSELIHDAKITVL 182 (289)
T ss_dssp CTTEEEEEECCSCT--HH-HHHHHHHTCSEEE
T ss_pred CCCEEEEEeCCCCH--HH-HHHHHHhCCeEEE
Confidence 35688999876642 22 2334433 56554
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.2 Score=44.59 Aligned_cols=78 Identities=18% Similarity=0.203 Sum_probs=57.0
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCcc-CCHHHHHHHHHHHHccc---CCCcEEeeCCC-CCCcCCHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLP-ITLEEMLVHCRAVARGA---KRPLLVGDLPF-GTYESSTNQAVDTAVR 178 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~-vTldeMi~h~~aV~Rga---~~~fvVaDmPf-gsY~~s~e~Av~nA~R 178 (243)
.|+.++++|+|.+++--. .-.. .+-++++.|.++|++++ +.|+++=|.|- .++..+++.. .|
T Consensus 90 la~~A~~~Gadavlv~~P---------~y~~~~s~~~l~~~f~~va~a~p~~~lPiilYn~P~~tg~~l~~~~~----~~ 156 (294)
T 3b4u_A 90 QSAEALNAGARNILLAPP---------SYFKNVSDDGLFAWFSAVFSKIGKDARDILVYNIPSVTMVTLSVELV----GR 156 (294)
T ss_dssp HHHHHHHTTCSEEEECCC---------CSSCSCCHHHHHHHHHHHHHHHCTTCCCEEEEECHHHHSCCCCHHHH----HH
T ss_pred HHHHHHhcCCCEEEEcCC---------cCCCCCCHHHHHHHHHHHHHhcCCCCCcEEEEECcchhCcCCCHHHH----HH
Confidence 467788999999986522 1222 47899999999999999 89999999994 2344577766 45
Q ss_pred HH-HHhC-CCEEEeCCCC
Q 026125 179 IL-KEGG-MDAIKLEGGS 194 (243)
Q Consensus 179 l~-keaG-AdaVKLEGg~ 194 (243)
|. +--. ..+||-..|.
T Consensus 157 La~~~pn~ivgiKds~gd 174 (294)
T 3b4u_A 157 LKAAFPGIVTGVKDSSGN 174 (294)
T ss_dssp HHHHCTTTEEEEEECCCC
T ss_pred HHHhCCCcEEEEEECCCC
Confidence 55 3345 7799977764
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.2 Score=45.80 Aligned_cols=78 Identities=15% Similarity=0.126 Sum_probs=57.3
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC-CCcCCHHHHHHHHHHHH-H
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG-TYESSTNQAVDTAVRIL-K 181 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg-sY~~s~e~Av~nA~Rl~-k 181 (243)
.|+.++++|+|.+++-= |.-...|-++++.|.++|+++++.|+++=|.|-- ++..+++.. .||. +
T Consensus 118 la~~A~~~Gadavlv~~---------P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~----~~La~~ 184 (343)
T 2v9d_A 118 LSQHAQQAGADGIVVIN---------PYYWKVSEANLIRYFEQVADSVTLPVMLYNFPALTGQDLTPALV----KTLADS 184 (343)
T ss_dssp HHHHHHHHTCSEEEEEC---------CSSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHH----HHHHHH
T ss_pred HHHHHHhcCCCEEEECC---------CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCchhcCcCCCHHHH----HHHHHh
Confidence 46778899999987642 1222347899999999999999999999999952 344577766 4555 4
Q ss_pred HhCCCEEEeCCCC
Q 026125 182 EGGMDAIKLEGGS 194 (243)
Q Consensus 182 eaGAdaVKLEGg~ 194 (243)
--...+||-..|.
T Consensus 185 ~pnIvgiKdssgd 197 (343)
T 2v9d_A 185 RSNIIGIKDTIDS 197 (343)
T ss_dssp CTTEEEEEECCSC
T ss_pred CCCEEEEEeCCCC
Confidence 4568899977664
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=94.27 E-value=0.11 Score=46.44 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=58.0
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~ke 182 (243)
.|+.++++|+|.+++-- |.-...+-++++.|.++|+++++.|+++=|.|- -++..+++.. .||.+-
T Consensus 94 la~~a~~~Gadavlv~~---------P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~----~~La~~ 160 (297)
T 3flu_A 94 LSQAAEKAGADYTLSVV---------PYYNKPSQEGIYQHFKTIAEATSIPMIIYNVPGRTVVSMTNDTI----LRLAEI 160 (297)
T ss_dssp HHHHHHHTTCSEEEEEC---------CCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSSCCCHHHH----HHHTTS
T ss_pred HHHHHHHcCCCEEEECC---------CCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCchhccCCCHHHH----HHHHcC
Confidence 36788899999987642 222344789999999999999999999999995 2344577765 455544
Q ss_pred hCCCEEEeCCCC
Q 026125 183 GGMDAIKLEGGS 194 (243)
Q Consensus 183 aGAdaVKLEGg~ 194 (243)
-...+||-..|.
T Consensus 161 pnivgiKdssgd 172 (297)
T 3flu_A 161 PNIVGVKEASGN 172 (297)
T ss_dssp TTEEEEEECSCC
T ss_pred CCEEEEEeCCCC
Confidence 568899988774
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=94.25 E-value=0.35 Score=39.69 Aligned_cols=112 Identities=13% Similarity=0.157 Sum_probs=69.6
Q ss_pred HHHHHHhhhCCCcEEEE-ecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 81 LTHLRQKHKNGEPITMV-TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 81 v~~Lr~~kk~g~~Itml-TAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
+..+|+.... ..+..+ ++.|...+..+.++|+|.| ++... + .+++..++. ...++ +.+
T Consensus 52 i~~ir~~~~~-~~~ig~~~v~~~~~~~~a~~~Gad~i-v~~~~-------~-------~~~~~~~~~----~g~~v-i~g 110 (205)
T 1wa3_A 52 IKELSFLKEK-GAIIGAGTVTSVEQCRKAVESGAEFI-VSPHL-------D-------EEISQFCKE----KGVFY-MPG 110 (205)
T ss_dssp HHHTHHHHHT-TCEEEEESCCSHHHHHHHHHHTCSEE-ECSSC-------C-------HHHHHHHHH----HTCEE-ECE
T ss_pred HHHHHHHCCC-CcEEEecccCCHHHHHHHHHcCCCEE-EcCCC-------C-------HHHHHHHHH----cCCcE-ECC
Confidence 5555554322 344444 7789999999999999999 66432 1 455654443 34443 332
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHc--CCceeeccCCccccccc
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA--GIAVMGHVGLTPQAISV 224 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~--GIPV~GHiGLtPQ~~~~ 224 (243)
. .+++++ .+.+ +.|+|.||+......-...++.+.+. .+||++==|.+|+.+..
T Consensus 111 -----~-~t~~e~----~~a~-~~Gad~vk~~~~~~~g~~~~~~l~~~~~~~pvia~GGI~~~~~~~ 166 (205)
T 1wa3_A 111 -----V-MTPTEL----VKAM-KLGHTILKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVNLDNVCE 166 (205)
T ss_dssp -----E-CSHHHH----HHHH-HTTCCEEEETTHHHHHHHHHHHHHTTCTTCEEEEBSSCCTTTHHH
T ss_pred -----c-CCHHHH----HHHH-HcCCCEEEEcCccccCHHHHHHHHHhCCCCcEEEcCCCCHHHHHH
Confidence 2 256665 3445 68999999875321123446667664 79998877788876543
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.49 Score=42.65 Aligned_cols=129 Identities=16% Similarity=0.163 Sum_probs=75.4
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCH-HHHHHHHHcCCCEEEeCcchhhhhccC-------CCCc------cCCH----H
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDY-PSAVHLDSAGIDICLVGDSAAMVVHGH-------DTTL------PITL----E 138 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~-~sA~iae~AGiDiILVGDSlgmv~lG~-------~dT~------~vTl----d 138 (243)
+.+|..++.+..+ || ..|+.+.++|+|.|=+=- .+|| |.+. .-++ .
T Consensus 132 ~~mt~~eI~~~i~-----------~~~~aA~~a~~aGfDgVeih~-----~~gyLl~qFlsp~~n~R~d~yGGslenr~r 195 (338)
T 1z41_A 132 VEMSAEKVKETVQ-----------EFKQAAARAKEAGFDVIEIHA-----AHGYLIHEFLSPLSNHRTDEYGGSPENRYR 195 (338)
T ss_dssp EECCHHHHHHHHH-----------HHHHHHHHHHHTTCSEEEEEE-----CTTSHHHHHHCTTTCCCCSTTSSSHHHHHH
T ss_pred ccCCHHHHHHHHH-----------HHHHHHHHHHHcCCCEEEecc-----ccchHHHHccCCCcCCcCcccCcchhhhHH
Confidence 4467777776542 23 457788899999994211 1222 2221 1123 3
Q ss_pred HHHHHHHHHHcccCCCcEEeeCCCCCC---cCCHHHHHHHHHHHHHHhCCCEEEeCCCC----------CchHHHHHHHH
Q 026125 139 EMLVHCRAVARGAKRPLLVGDLPFGTY---ESSTNQAVDTAVRILKEGGMDAIKLEGGS----------PSRITAARGIV 205 (243)
Q Consensus 139 eMi~h~~aV~Rga~~~fvVaDmPfgsY---~~s~e~Av~nA~Rl~keaGAdaVKLEGg~----------~~~~~~i~~L~ 205 (243)
-+++.+++|++..+.+ |.+.+.-..| +.+.+++++.|.++. +.|+|.|.+-++. ......++.+.
T Consensus 196 ~~~eiv~avr~~v~~p-v~vris~~~~~~~g~~~~~~~~~a~~l~-~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir 273 (338)
T 1z41_A 196 FLREIIDEVKQVWDGP-LFVRVSASDYTDKGLDIADHIGFAKWMK-EQGVDLIDCSSGALVHADINVFPGYQVSFAEKIR 273 (338)
T ss_dssp HHHHHHHHHHHHCCSC-EEEEEECCCCSTTSCCHHHHHHHHHHHH-HTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCc-EEEEecCcccCCCCCCHHHHHHHHHHHH-HcCCCEEEEecCccccCCCCCCccchHHHHHHHH
Confidence 3577788888888666 4444322111 236788888876665 6899999986542 11123445554
Q ss_pred Hc-CCceeeccCC-cccccc
Q 026125 206 EA-GIAVMGHVGL-TPQAIS 223 (243)
Q Consensus 206 ~~-GIPV~GHiGL-tPQ~~~ 223 (243)
+. +|||++==|+ +|+.+.
T Consensus 274 ~~~~iPVi~~Ggi~s~~~a~ 293 (338)
T 1z41_A 274 EQADMATGAVGMITDGSMAE 293 (338)
T ss_dssp HHHCCEEEECSSCCSHHHHH
T ss_pred HHCCCCEEEECCCCCHHHHH
Confidence 43 8999986566 455443
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.24 Score=47.52 Aligned_cols=89 Identities=18% Similarity=0.188 Sum_probs=56.5
Q ss_pred CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccC--CCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCC
Q 026125 91 GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGH--DTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESS 168 (243)
Q Consensus 91 g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~--~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s 168 (243)
+.++.+-++.+...|+.+.++|+|.|.||-.-|....+. .....-++ +.+..+..+++..+.| ||+|=. . .+
T Consensus 297 ~~~vi~g~v~t~e~a~~~~~aGad~i~vg~g~gsi~~~~~~~g~g~p~~-~~l~~v~~~~~~~~iP-VIa~GG---I-~~ 370 (511)
T 3usb_A 297 SLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQL-TAVYDCATEARKHGIP-VIADGG---I-KY 370 (511)
T ss_dssp TSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCCHHHHHCCCCCHH-HHHHHHHHHHHTTTCC-EEEESC---C-CS
T ss_pred CceEEeeeeccHHHHHHHHHhCCCEEEECCCCccccccccccCCCCCcH-HHHHHHHHHHHhCCCc-EEEeCC---C-CC
Confidence 457888899999999999999999999864333321110 01111123 3344444455555555 788844 4 36
Q ss_pred HHHHHHHHHHHHHHhCCCEEEe
Q 026125 169 TNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 169 ~e~Av~nA~Rl~keaGAdaVKL 190 (243)
++++ .+.+ +.||++|.+
T Consensus 371 ~~di----~kal-a~GA~~V~v 387 (511)
T 3usb_A 371 SGDM----VKAL-AAGAHVVML 387 (511)
T ss_dssp HHHH----HHHH-HTTCSEEEE
T ss_pred HHHH----HHHH-HhCchhhee
Confidence 7777 4556 489999988
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=94.19 E-value=0.22 Score=44.57 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=58.2
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHHHh
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKEG 183 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~kea 183 (243)
|+.++++|+|.+++-- |.-...+-++++.|.++|+++++.|+++=|.|- -++..+++.. .||.+--
T Consensus 103 a~~a~~~Gadavlv~~---------P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~----~~La~~p 169 (304)
T 3l21_A 103 AKACAAEGAHGLLVVT---------PYYSKPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTI----RALASHP 169 (304)
T ss_dssp HHHHHHHTCSEEEEEC---------CCSSCCCHHHHHHHHHHHHTSCSSCEEEEECHHHHSSCCCHHHH----HHHHTST
T ss_pred HHHHHHcCCCEEEECC---------CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHH----HHHhcCC
Confidence 6788899999997652 222334789999999999999999999999984 2344677766 4555545
Q ss_pred CCCEEEeCCCC
Q 026125 184 GMDAIKLEGGS 194 (243)
Q Consensus 184 GAdaVKLEGg~ 194 (243)
...+||-..|.
T Consensus 170 nIvgiKdssgd 180 (304)
T 3l21_A 170 NIVGVXDAKAD 180 (304)
T ss_dssp TEEEEEECSCC
T ss_pred CEEEEECCCCC
Confidence 68899998774
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=94.16 E-value=0.57 Score=40.01 Aligned_cols=99 Identities=17% Similarity=0.167 Sum_probs=58.0
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE-e--eCCCCCCcCCHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-G--DLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV-a--DmPfgsY~~s~e~Av~nA~Rl 179 (243)
..++.+.++|+|.|=+==.++...-| ..+++....++|++.++ |+++ . ..|+ + +.++..+. .+.
T Consensus 74 ~~~~~A~~~Gad~Id~viN~g~~~~~-------~~~~~~~~i~~v~~a~~-pv~vKvi~e~~~--l--~~~~~~~~-a~~ 140 (225)
T 1mzh_A 74 KEAVEAVRDGAQELDIVWNLSAFKSE-------KYDFVVEELKEIFRETP-SAVHKVIVETPY--L--NEEEIKKA-VEI 140 (225)
T ss_dssp HHHHHHHHTTCSEEEEECCHHHHHTT-------CHHHHHHHHHHHHHTCT-TSEEEEECCGGG--C--CHHHHHHH-HHH
T ss_pred HHHHHHHHcCCCEEEEEecHHHHhcC-------ChHHHHHHHHHHHHHhc-CceEEEEEeCCC--C--CHHHHHHH-HHH
Confidence 34567778999988421122222222 23667777889998887 6544 2 2333 2 56665554 455
Q ss_pred HHHhCCCEEEeCCCCC---chHHHHHHHHHc---CCceeec
Q 026125 180 LKEGGMDAIKLEGGSP---SRITAARGIVEA---GIAVMGH 214 (243)
Q Consensus 180 ~keaGAdaVKLEGg~~---~~~~~i~~L~~~---GIPV~GH 214 (243)
..++|||+||.--|.. .....++.+.+. .|||.+=
T Consensus 141 a~eaGad~I~tstg~~~gga~~~~i~~v~~~v~~~ipVia~ 181 (225)
T 1mzh_A 141 CIEAGADFIKTSTGFAPRGTTLEEVRLIKSSAKGRIKVKAS 181 (225)
T ss_dssp HHHHTCSEEECCCSCSSSCCCHHHHHHHHHHHTTSSEEEEE
T ss_pred HHHhCCCEEEECCCCCCCCCCHHHHHHHHHHhCCCCcEEEE
Confidence 6689999999874321 122334555543 6888874
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.2 Score=45.12 Aligned_cols=75 Identities=12% Similarity=0.025 Sum_probs=55.9
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHh
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~kea 183 (243)
.|+.++++|+|.+++--. .-...+-++++.|.++|+++++.|+++=| ..++ .+++.. .||.+--
T Consensus 98 la~~A~~~Gadavlv~~P---------~y~~~s~~~l~~~f~~va~a~~lPiilYn--~tg~-l~~~~~----~~La~~p 161 (314)
T 3d0c_A 98 LGKSAIDSGADCVMIHQP---------VHPYITDAGAVEYYRNIIEALDAPSIIYF--KDAH-LSDDVI----KELAPLD 161 (314)
T ss_dssp HHHHHHHTTCSEEEECCC---------CCSCCCHHHHHHHHHHHHHHSSSCEEEEE--CCTT-SCTHHH----HHHTTCT
T ss_pred HHHHHHHcCCCEEEECCC---------CCCCCCHHHHHHHHHHHHHhCCCCEEEEe--CCCC-cCHHHH----HHHHcCC
Confidence 466788999999986522 22334789999999999999999998888 4455 677766 3454435
Q ss_pred CCCEEEeCCCC
Q 026125 184 GMDAIKLEGGS 194 (243)
Q Consensus 184 GAdaVKLEGg~ 194 (243)
...+||-..|.
T Consensus 162 nIvgiKdssgd 172 (314)
T 3d0c_A 162 KLVGIKYAIND 172 (314)
T ss_dssp TEEEEEECCCC
T ss_pred CEEEEEeCCCC
Confidence 68899988874
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.41 Score=45.01 Aligned_cols=104 Identities=22% Similarity=0.393 Sum_probs=61.4
Q ss_pred EEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHH
Q 026125 95 TMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVD 174 (243)
Q Consensus 95 tmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~ 174 (243)
.++...|...+..+-++|+|+|.+.-+ +|++ +.++...+.+++..+.++++.+ . .+.++|
T Consensus 139 ~~v~~~~~e~~~~lveaGvdvIvldta-----~G~~-------~~~~e~I~~ik~~~~i~Vi~g~-----V-~t~e~A-- 198 (400)
T 3ffs_A 139 AAIGVNEIERAKLLVEAGVDVIVLDSA-----HGHS-------LNIIRTLKEIKSKMNIDVIVGN-----V-VTEEAT-- 198 (400)
T ss_dssp EEECCC-CHHHHHHHHHTCSEEEECCS-----CCSB-------HHHHHHHHHHHTTCCCEEEEEE-----E-CSHHHH--
T ss_pred eecCCCHHHHHHHHHHcCCCEEEEeCC-----CCCc-------ccHHHHHHHHHhcCCCeEEEee-----c-CCHHHH--
Confidence 455667777889999999999977522 2332 2334455677776655544433 3 466766
Q ss_pred HHHHHHHHhCCCEEEe--CCCC-----------CchHHHHHHHHH----cCCceeeccCC-cccc
Q 026125 175 TAVRILKEGGMDAIKL--EGGS-----------PSRITAARGIVE----AGIAVMGHVGL-TPQA 221 (243)
Q Consensus 175 nA~Rl~keaGAdaVKL--EGg~-----------~~~~~~i~~L~~----~GIPV~GHiGL-tPQ~ 221 (243)
.+++ ++|||+|++ ++|. .-....+..+.+ .+|||++==|+ +|..
T Consensus 199 --~~a~-~aGAD~I~vG~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~d 260 (400)
T 3ffs_A 199 --KELI-ENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGD 260 (400)
T ss_dssp --HHHH-HTTCSEEEECC---------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHH
T ss_pred --HHHH-HcCCCEEEEeCCCCcCcccccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHH
Confidence 4555 699999999 1111 001222344443 48999987666 3544
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=93.89 E-value=0.24 Score=43.76 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=56.5
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCcc-CCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLP-ITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~-vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~k 181 (243)
.|+.++++|+|.+++--. .-.. .+-++++.|.++|+++++.|+++=|.|. -++..+++...+ .
T Consensus 82 la~~A~~~Gadavlv~~P---------~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~-----~- 146 (286)
T 2r91_A 82 LAKYAESRGAEAVASLPP---------YYFPRLSERQIAKYFRDLCSAVSIPVFLYNYPAAVGRDVDARAAKE-----L- 146 (286)
T ss_dssp HHHHHHHTTCSEEEECCS---------CSSTTCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSSCCCHHHHHH-----H-
T ss_pred HHHHHHhcCCCEEEEcCC---------cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeChhhcCCCCCHHHHHh-----c-
Confidence 467788999999986522 1223 4789999999999999999999999994 244457776644 3
Q ss_pred HhCCCEEEeCCCC
Q 026125 182 EGGMDAIKLEGGS 194 (243)
Q Consensus 182 eaGAdaVKLEGg~ 194 (243)
-...+||-..|.
T Consensus 147 -pnivgiKds~gd 158 (286)
T 2r91_A 147 -GCIRGVKDTNES 158 (286)
T ss_dssp -SCEEEEEECCSC
T ss_pred -CCEEEEEeCCCC
Confidence 468899988774
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=93.85 E-value=0.38 Score=44.36 Aligned_cols=97 Identities=13% Similarity=0.137 Sum_probs=57.3
Q ss_pred HHHHhhhC-CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhcc--CCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 83 HLRQKHKN-GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHG--HDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 83 ~Lr~~kk~-g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG--~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
.+++.++. +.|+.+-++-+...|+.++++|+|.|.||-.-|...-. ..... ...-+.+..+..+++..+.| |++|
T Consensus 136 ~i~~i~~~~~~~Vivg~v~t~e~A~~l~~aGaD~I~VG~~~Gs~~~tr~~~g~g-~p~~~~i~~v~~~~~~~~iP-VIA~ 213 (361)
T 3khj_A 136 TLKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVG-VPQITAIEKCSSVASKFGIP-IIAD 213 (361)
T ss_dssp HHHHHHHHCCCEEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTCCHHHHTCBC-CCHHHHHHHHHHHHHHHTCC-EEEE
T ss_pred HHHHHHHhcCCcEEEccCCCHHHHHHHHHcCcCEEEEecCCCcCCCcccccCCC-CCcHHHHHHHHHHHhhcCCe-EEEE
Confidence 34443333 56666668899999999999999999986322211000 00111 12223344455555555556 7787
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
= +- .+++++ .+.+ +.|||+|.+
T Consensus 214 G---GI-~~~~di----~kal-a~GAd~V~v 235 (361)
T 3khj_A 214 G---GI-RYSGDI----GKAL-AVGASSVMI 235 (361)
T ss_dssp S---CC-CSHHHH----HHHH-HHTCSEEEE
T ss_pred C---CC-CCHHHH----HHHH-HcCCCEEEE
Confidence 4 44 366776 4566 479999987
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.1 Score=47.53 Aligned_cols=78 Identities=28% Similarity=0.290 Sum_probs=58.5
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC-CCcCCHHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG-TYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg-sY~~s~e~Av~nA~Rl~ke 182 (243)
.|+.++++|+|.+++-= |.-...+-++++.|.++|+++++.|+++=|.|.- ++..+++.. .||.+.
T Consensus 121 la~~A~~~Gadavlv~~---------P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~----~~La~~ 187 (332)
T 2r8w_A 121 LAKDAEAAGADALLLAP---------VSYTPLTQEEAYHHFAAVAGATALPLAIYNNPTTTRFTFSDELL----VRLAYI 187 (332)
T ss_dssp HHHHHHHHTCSEEEECC---------CCSSCCCHHHHHHHHHHHHHHCSSCEEEECCHHHHCCCCCHHHH----HHHHTS
T ss_pred HHHHHHhcCCCEEEECC---------CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHH----HHHHcC
Confidence 46778899999998652 2223457899999999999999999999999942 344577766 455544
Q ss_pred hCCCEEEeCCCC
Q 026125 183 GGMDAIKLEGGS 194 (243)
Q Consensus 183 aGAdaVKLEGg~ 194 (243)
-...+||-..|.
T Consensus 188 pnIvgiKdssgd 199 (332)
T 2r8w_A 188 PNIRAIKMPLPA 199 (332)
T ss_dssp TTEEEEEECCCT
T ss_pred CCEEEEEeCCCC
Confidence 568899988774
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.29 Score=43.52 Aligned_cols=117 Identities=12% Similarity=0.085 Sum_probs=76.7
Q ss_pred CCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhh----hhccCCCCccCCHHHHHHHHHHHHcccCC-Cc-EE------
Q 026125 90 NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAM----VVHGHDTTLPITLEEMLVHCRAVARGAKR-PL-LV------ 157 (243)
Q Consensus 90 ~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgm----v~lG~~dT~~vTldeMi~h~~aV~Rga~~-~f-vV------ 157 (243)
.+-++.++. .+......+-++|+|.|-+-|+..- ..++ .|.+|.+..++.+.+-+.. -. +-
T Consensus 75 ~~~~~~~l~-~~~~~i~~a~~aG~~~v~i~~~~s~~~~~~~~~------~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~ 147 (302)
T 2ftp_A 75 PGVTYAALA-PNLKGFEAALESGVKEVAVFAAASEAFSQRNIN------CSIKDSLERFVPVLEAARQHQVRVRGYISCV 147 (302)
T ss_dssp TTSEEEEEC-CSHHHHHHHHHTTCCEEEEEEESCHHHHHHHHS------SCHHHHHHHHHHHHHHHHHTTCEEEEEEECT
T ss_pred CCCEEEEEe-CCHHHHHHHHhCCcCEEEEEEecCHHHHHHHhC------CCHHHHHHHHHHHHHHHHHCCCeEEEEEEEE
Confidence 345777776 5888888888999999876655532 1122 4788888777766654322 11 21
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC-----CchHHHHHHHHHc--CCceeecc
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-----PSRITAARGIVEA--GIAVMGHV 215 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~-----~~~~~~i~~L~~~--GIPV~GHi 215 (243)
.+-||.++ .+++++++.+.++. +.|||.|.|-|-. +...++++.|.+. ++|+.-|.
T Consensus 148 ~~~e~~~~-~~~~~~~~~~~~~~-~~G~d~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~l~~H~ 210 (302)
T 2ftp_A 148 LGCPYDGD-VDPRQVAWVARELQ-QMGCYEVSLGDTIGVGTAGATRRLIEAVASEVPRERLAGHF 210 (302)
T ss_dssp TCBTTTBC-CCHHHHHHHHHHHH-HTTCSEEEEEESSSCCCHHHHHHHHHHHTTTSCGGGEEEEE
T ss_pred eeCCcCCC-CCHHHHHHHHHHHH-HcCCCEEEEeCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 35577666 68999988887766 6999999998542 2234555666554 46776663
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=93.76 E-value=0.19 Score=44.89 Aligned_cols=78 Identities=22% Similarity=0.291 Sum_probs=58.4
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCC-CCCcCCHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPF-GTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~k 181 (243)
.|+.++++|+|.+++-- |.-...|-++++.|.++|+++++ .|+++=|.|- .++..+++.. .||.+
T Consensus 98 la~~A~~~Gadavlv~~---------P~y~~~s~~~l~~~f~~va~a~~~lPiilYn~P~~tg~~l~~~~~----~~La~ 164 (303)
T 2wkj_A 98 LAASAKRYGFDAVSAVT---------PFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQI----NTLVT 164 (303)
T ss_dssp HHHHHHHHTCSEEEEEC---------CCSSCCCHHHHHHHHHHHHHHHTTCCEEEEECHHHHCCCCCHHHH----HHHHT
T ss_pred HHHHHHhCCCCEEEecC---------CCCCCCCHHHHHHHHHHHHHhCCCCCEEEEeCccccCCCCCHHHH----HHHhc
Confidence 46778899999987642 22233478999999999999999 9999999995 2344577766 45554
Q ss_pred HhCCCEEEeCCCC
Q 026125 182 EGGMDAIKLEGGS 194 (243)
Q Consensus 182 eaGAdaVKLEGg~ 194 (243)
.-...+||-..|.
T Consensus 165 ~pnIvgiK~s~gd 177 (303)
T 2wkj_A 165 LPGVGALXQTSGD 177 (303)
T ss_dssp STTEEEEEECCCC
T ss_pred CCCEEEEeCCCCC
Confidence 4568899999885
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=93.75 E-value=0.21 Score=44.73 Aligned_cols=98 Identities=23% Similarity=0.237 Sum_probs=65.8
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~ke 182 (243)
.|+.++++|+|.+++-=. .-...+-++++.|.++|+++++.|+++=|.|- -++..+++.. .||.+.
T Consensus 103 la~~A~~~Gadavlv~~P---------~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~----~~La~~ 169 (304)
T 3cpr_A 103 LAEAAASAGADGLLVVTP---------YYSKPSQEGLLAHFGAIAAATEVPICLYDIPGRSGIPIESDTM----RRLSEL 169 (304)
T ss_dssp HHHHHHHTTCSEEEEECC---------CSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSSCCCHHHH----HHHTTS
T ss_pred HHHHHHhcCCCEEEECCC---------CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHH----HHHHcC
Confidence 467788999999876422 22334789999999999999999999999995 2344577766 455544
Q ss_pred hCCCEEEeCCCCCchHHHHHHHHHc-CCcee-eccCC
Q 026125 183 GGMDAIKLEGGSPSRITAARGIVEA-GIAVM-GHVGL 217 (243)
Q Consensus 183 aGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~-GHiGL 217 (243)
-...+||-..|.. .. +..+.+. ++.|. |+=++
T Consensus 170 pnIvgiKdssgd~--~~-~~~~~~~~~f~v~~G~d~~ 203 (304)
T 3cpr_A 170 PTILAVXDAKGDL--VA-ATSLIKETGLAWYSGDDPL 203 (304)
T ss_dssp TTEEEEEECSCCH--HH-HHHHHHHHCCEEEECSGGG
T ss_pred CCEEEEecCCCCH--HH-HHHHHHhcCEEEEECcHHH
Confidence 5688999987742 22 2333332 66654 44333
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=93.70 E-value=0.14 Score=45.00 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=45.9
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG 184 (243)
.+.+.++|.|+|.+|-| ..+|++.++..+++|++ .+.|++. ||| | .|+- ++|
T Consensus 26 ~~~l~~~GaD~IelG~S-----------~g~t~~~~~~~v~~ir~-~~~Pivl--~~y--~-~n~i-----------~~g 77 (234)
T 2f6u_A 26 IKAVADSGTDAVMISGT-----------QNVTYEKARTLIEKVSQ-YGLPIVV--EPS--D-PSNV-----------VYD 77 (234)
T ss_dssp HHHHHTTTCSEEEECCC-----------TTCCHHHHHHHHHHHTT-SCCCEEE--CCS--S-CCCC-----------CCC
T ss_pred HHHHHHcCCCEEEECCC-----------CCCCHHHHHHHHHHhcC-CCCCEEE--ecC--C-cchh-----------hcC
Confidence 45678899999999964 56899999999999998 7788655 666 3 1111 689
Q ss_pred CCEEEeCC
Q 026125 185 MDAIKLEG 192 (243)
Q Consensus 185 AdaVKLEG 192 (243)
+|++-+-+
T Consensus 78 vDg~iipd 85 (234)
T 2f6u_A 78 VDYLFVPT 85 (234)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEcc
Confidence 99998744
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.78 Score=39.51 Aligned_cols=108 Identities=18% Similarity=0.112 Sum_probs=66.4
Q ss_pred HHHHHHhh-hCCCcEEEEecCC----------HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHc
Q 026125 81 LTHLRQKH-KNGEPITMVTAYD----------YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR 149 (243)
Q Consensus 81 v~~Lr~~k-k~g~~ItmlTAYD----------~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~R 149 (243)
+..+.+.. .+|.-|+-+-+++ ...|+.++++|...|.+| ++ .+.++|++
T Consensus 7 ~~~~~~~~~~~~~livscq~~~~~pl~~~~~~~~~A~a~~~~Ga~~i~~~----------------~~----~~i~~ir~ 66 (229)
T 3q58_A 7 LARLEQSVHENGGLIVSCQPVPGSPMDKPEIVAAMAQAAASAGAVAVRIE----------------GI----ENLRTVRP 66 (229)
T ss_dssp HHHHHHHHHHHCCEEEECCCCTTSTTCSHHHHHHHHHHHHHTTCSEEEEE----------------SH----HHHHHHGG
T ss_pred HHHHHHHhhhcCCEEEEEeCCCCCCCCCcchHHHHHHHHHHCCCcEEEEC----------------CH----HHHHHHHH
Confidence 34444443 2345666667777 678999999999999885 12 34578999
Q ss_pred ccCCCcEEee-CCCCC---Cc-CCHHHHHHHHHHHHHHhCCCEEEeCCCC----CchHHHHHHHHHcCCceee
Q 026125 150 GAKRPLLVGD-LPFGT---YE-SSTNQAVDTAVRILKEGGMDAIKLEGGS----PSRITAARGIVEAGIAVMG 213 (243)
Q Consensus 150 ga~~~fvVaD-mPfgs---Y~-~s~e~Av~nA~Rl~keaGAdaVKLEGg~----~~~~~~i~~L~~~GIPV~G 213 (243)
.++.|++-.. -.|++ |- .+.+++ ..+. ++|||.|-+-... +...++++.+-+.|++|+.
T Consensus 67 ~v~~Pvig~~k~~~~~~~~~I~~~~~~i----~~~~-~aGad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~ 134 (229)
T 3q58_A 67 HLSVPIIGIIKRDLTGSPVRITPYLQDV----DALA-QAGADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMA 134 (229)
T ss_dssp GCCSCEEEECBCCCSSCCCCBSCSHHHH----HHHH-HHTCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEE
T ss_pred hcCCCEEEEEeecCCCCceEeCccHHHH----HHHH-HcCCCEEEECccccCChHHHHHHHHHHHHCCCEEEE
Confidence 8888854111 12222 21 123343 3344 6899999774431 2345667777777777775
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.59 Score=42.13 Aligned_cols=80 Identities=18% Similarity=0.162 Sum_probs=57.8
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC--CCcCCHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG--TYESSTNQAVDTAVRILK 181 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg--sY~~s~e~Av~nA~Rl~k 181 (243)
.|+.++++|+|.+++--.. .+. .+.+-++++.|.++|+++++.|+++=|.|-- ++..+++.. .||.+
T Consensus 98 la~~a~~~Gadavlv~~P~---y~~----kp~~~~~l~~~f~~ia~a~~lPiilYn~P~~t~g~~l~~~~~----~~La~ 166 (318)
T 3qfe_A 98 HINDASVAGANYVLVLPPA---YFG----KATTPPVIKSFFDDVSCQSPLPVVIYNFPGVCNGIDLDSDMI----TTIAR 166 (318)
T ss_dssp HHHHHHHHTCSEEEECCCC---C-------CCCHHHHHHHHHHHHHHCSSCEEEEECCC----CCCCHHHH----HHHHH
T ss_pred HHHHHHHcCCCEEEEeCCc---ccC----CCCCHHHHHHHHHHHHhhCCCCEEEEeCCcccCCCCCCHHHH----HHHHh
Confidence 3678889999999864211 010 2357899999999999999999999999963 455677655 56665
Q ss_pred -HhCCCEEEeCCCC
Q 026125 182 -EGGMDAIKLEGGS 194 (243)
Q Consensus 182 -eaGAdaVKLEGg~ 194 (243)
--...+||-..|.
T Consensus 167 ~~pnIvgiKdssgd 180 (318)
T 3qfe_A 167 KNPNVVGVKLTCAS 180 (318)
T ss_dssp HCTTEEEEEESSCC
T ss_pred hCCCEEEEEeCCCC
Confidence 2568899998774
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=93.50 E-value=0.66 Score=39.97 Aligned_cols=107 Identities=14% Similarity=0.152 Sum_probs=66.4
Q ss_pred HHHHHHhh-hCCCcEEEEecCC----------HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHc
Q 026125 81 LTHLRQKH-KNGEPITMVTAYD----------YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR 149 (243)
Q Consensus 81 v~~Lr~~k-k~g~~ItmlTAYD----------~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~R 149 (243)
+..+.+.. .+|.-|+-+-+++ ...|+.++++|...|.+| ++ ...+.|++
T Consensus 7 ~~~~~~~~~~~~~livscq~~~~~pl~~~~~~~~~A~a~~~~Ga~~i~~~----------------~~----~~i~~ir~ 66 (232)
T 3igs_A 7 LEQLDKNIAASGGLIVSCQPVPGSPLDKPEIVAAMALAAEQAGAVAVRIE----------------GI----DNLRMTRS 66 (232)
T ss_dssp HHHHHHHHHHHCCEEEECCCCTTCTTCSHHHHHHHHHHHHHTTCSEEEEE----------------SH----HHHHHHHT
T ss_pred HHHHHHHhhhcCCEEEEEeCCCCCCCCCcchHHHHHHHHHHCCCeEEEEC----------------CH----HHHHHHHH
Confidence 44444443 2345667777787 778999999999999885 12 34578888
Q ss_pred ccCCCcEEeeC--CCCC---Cc-CCHHHHHHHHHHHHHHhCCCEEEeCCC----CCchHHHHHHHHHcCCceee
Q 026125 150 GAKRPLLVGDL--PFGT---YE-SSTNQAVDTAVRILKEGGMDAIKLEGG----SPSRITAARGIVEAGIAVMG 213 (243)
Q Consensus 150 ga~~~fvVaDm--Pfgs---Y~-~s~e~Av~nA~Rl~keaGAdaVKLEGg----~~~~~~~i~~L~~~GIPV~G 213 (243)
.++.|+ ++.. .|++ |- .+.+++ ..++ +.|||.|-+-.. .+...++++.+-+.|++|+.
T Consensus 67 ~v~~Pv-ig~~k~d~~~~~~~I~~~~~~i----~~~~-~~Gad~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~ 134 (232)
T 3igs_A 67 LVSVPI-IGIIKRDLDESPVRITPFLDDV----DALA-QAGAAIIAVDGTARQRPVAVEALLARIHHHHLLTMA 134 (232)
T ss_dssp TCCSCE-EEECBCCCSSCCCCBSCSHHHH----HHHH-HHTCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEE
T ss_pred hcCCCE-EEEEeecCCCcceEeCccHHHH----HHHH-HcCCCEEEECccccCCHHHHHHHHHHHHHCCCEEEE
Confidence 888885 4322 2333 21 123444 3344 689999987543 12345566766677777765
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.61 Score=42.30 Aligned_cols=88 Identities=13% Similarity=0.065 Sum_probs=61.3
Q ss_pred HHHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 104 sA~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
.|+-+.++|+|.+= +|+ ++++.+..+++|+++.+ ...|..|.. ++| +.+++++.+.+ +
T Consensus 152 ~a~~~~~~Gf~~iKik~g~---------------~~~~~~e~v~avr~a~g~d~~l~vDan-~~~--~~~~a~~~~~~-l 212 (379)
T 2rdx_A 152 ELARHRAAGYRQFQIKVGA---------------DWQSDIDRIRACLPLLEPGEKAMADAN-QGW--RVDNAIRLARA-T 212 (379)
T ss_dssp HHHHHHHTTCCEEEEECCS---------------CHHHHHHHHHHHGGGSCTTCEEEEECT-TCS--CHHHHHHHHHH-T
T ss_pred HHHHHHHcCCCEEEEeccC---------------CHHHHHHHHHHHHHhcCCCCEEEEECC-CCC--CHHHHHHHHHH-H
Confidence 34555678999984 453 46778899999999885 455678975 577 78999887755 5
Q ss_pred HHhCCCEEEeCCCCCchHHHHHHHHHc-CCceeec
Q 026125 181 KEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 181 keaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~GH 214 (243)
++.|. .+|.... .....+.|.+. +|||++=
T Consensus 213 ~~~~i---~iE~P~~-~~~~~~~l~~~~~iPI~~d 243 (379)
T 2rdx_A 213 RDLDY---ILEQPCR-SYEECQQVRRVADQPMKLD 243 (379)
T ss_dssp TTSCC---EEECCSS-SHHHHHHHHTTCCSCEEEC
T ss_pred HhCCe---EEeCCcC-CHHHHHHHHhhCCCCEEEe
Confidence 45664 6787654 23335666653 8999874
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=93.48 E-value=0.25 Score=43.88 Aligned_cols=86 Identities=12% Similarity=0.072 Sum_probs=60.8
Q ss_pred cEEEEecCCH----HHHHHHHHcCCCEEEeCcchhhhhccCCCCcc-CCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCc
Q 026125 93 PITMVTAYDY----PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLP-ITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYE 166 (243)
Q Consensus 93 ~ItmlTAYD~----~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~-vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~ 166 (243)
-|+-+++.+. -.|+.++++|+|.+++--. .-.. .|-++++.|.++|+++++.|+++=|.|- -++.
T Consensus 68 viaGvg~~~t~~ai~la~~A~~~Gadavlv~~P---------~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~ 138 (293)
T 1w3i_A 68 IIFQVGGLNLDDAIRLAKLSKDFDIVGIASYAP---------YYYPRMSEKHLVKYFKTLCEVSPHPVYLYNYPTATGKD 138 (293)
T ss_dssp EEEECCCSCHHHHHHHHHHGGGSCCSEEEEECC---------CSCSSCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCC
T ss_pred EEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCC---------CCCCCCCHHHHHHHHHHHHhhCCCCEEEEECchhhCcC
Confidence 3344444443 3467788899999876422 2223 4789999999999999999999999993 2444
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 167 SSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 167 ~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
.+++...+ . -...+||-..|.
T Consensus 139 l~~~~~~~-----~--pnIvgiKds~gd 159 (293)
T 1w3i_A 139 IDAKVAKE-----I--GCFTGVKDTIEN 159 (293)
T ss_dssp CCHHHHHH-----H--CCEEEEEECCSC
T ss_pred CCHHHHHh-----c--CCEEEEEeCCCC
Confidence 57776644 3 468899988774
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=93.47 E-value=0.83 Score=41.82 Aligned_cols=96 Identities=16% Similarity=0.116 Sum_probs=61.1
Q ss_pred CCHHHHHHhhh-CCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcE
Q 026125 79 VTLTHLRQKHK-NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLL 156 (243)
Q Consensus 79 ~tv~~Lr~~kk-~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fv 156 (243)
.++.++++.++ -+.|+.+=.+.+...|+.+.++|+|.|.|+...+-. .|+.+.+++- + +.|++..+ ...|
T Consensus 212 ~~~~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~~Gad~I~vs~~ggr~----~~~~~~~~~~-l---~~v~~~~~~~ipv 283 (370)
T 1gox_A 212 LSWKDVAWLQTITSLPILVKGVITAEDARLAVQHGAAGIIVSNHGARQ----LDYVPATIMA-L---EEVVKAAQGRIPV 283 (370)
T ss_dssp CCHHHHHHHHHHCCSCEEEECCCSHHHHHHHHHTTCSEEEECCGGGTS----STTCCCHHHH-H---HHHHHHTTTSSCE
T ss_pred chHHHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEECCCCCcc----CCCcccHHHH-H---HHHHHHhCCCCEE
Confidence 45666666543 367877657788999999999999999886433321 2334444443 3 23333332 3347
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
++|= +. .+.+++ .+++. .|||+|.+-
T Consensus 284 ia~G---GI-~~~~D~----~k~l~-~GAdaV~iG 309 (370)
T 1gox_A 284 FLDG---GV-RRGTDV----FKALA-LGAAGVFIG 309 (370)
T ss_dssp EEES---SC-CSHHHH----HHHHH-HTCSEEEEC
T ss_pred EEEC---CC-CCHHHH----HHHHH-cCCCEEeec
Confidence 7774 44 377787 56774 899999983
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=93.45 E-value=0.12 Score=45.79 Aligned_cols=78 Identities=17% Similarity=0.220 Sum_probs=56.7
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC-CCcCCHHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG-TYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg-sY~~s~e~Av~nA~Rl~ke 182 (243)
.|+.++++|+|.+++-- |.-...|-++++.|.++|+++++.|+++=|.|.- ++..+++.. .||.+.
T Consensus 88 la~~a~~~Gadavlv~~---------P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~----~~La~~ 154 (291)
T 3a5f_A 88 MSKWAESIGVDGLLVIT---------PYYNKTTQKGLVKHFKAVSDAVSTPIIIYNVPGRTGLNITPGTL----KELCED 154 (291)
T ss_dssp HHHHHHHTTCSEEEEEC---------CCSSCCCHHHHHHHC-CTGGGCCSCEEEEECHHHHSCCCCHHHH----HHHTTS
T ss_pred HHHHHHhcCCCEEEEcC---------CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHH----HHHHcC
Confidence 46778899999987642 2223347899999999999999999999999952 344576666 455544
Q ss_pred hCCCEEEeCCCC
Q 026125 183 GGMDAIKLEGGS 194 (243)
Q Consensus 183 aGAdaVKLEGg~ 194 (243)
-...+||-..|.
T Consensus 155 pnivgiK~s~gd 166 (291)
T 3a5f_A 155 KNIVAVXEASGN 166 (291)
T ss_dssp TTEEEEEECSCC
T ss_pred CCEEEEeCCCCC
Confidence 568899987764
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=93.40 E-value=0.39 Score=43.12 Aligned_cols=73 Identities=16% Similarity=0.140 Sum_probs=54.8
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC--CCcEEeeCCC-CCCcCCHHHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK--RPLLVGDLPF-GTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~--~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~k 181 (243)
|+.++++|+|.+++-=.. | ..|-++++.|.++|+++++ .|+++=|.|- .++..+++.. .||.+
T Consensus 95 a~~A~~~Gadavlv~~P~------~----~~s~~~l~~~f~~va~a~~~~lPiilYn~P~~tg~~l~~~~~----~~La~ 160 (313)
T 3dz1_A 95 ARLSMDAGAAGVMIAPPP------S----LRTDEQITTYFRQATEAIGDDVPWVLQDYPLTLSVVMTPKVI----RQIVM 160 (313)
T ss_dssp HHHHHHHTCSEEEECCCT------T----CCSHHHHHHHHHHHHHHHCTTSCEEEEECHHHHCCCCCHHHH----HHHHH
T ss_pred HHHHHHcCCCEEEECCCC------C----CCCHHHHHHHHHHHHHhCCCCCcEEEEeCccccCcCCCHHHH----HHHHH
Confidence 678889999999874111 1 1378999999999999998 9999999995 2444576644 56664
Q ss_pred H-hCCCEEEeC
Q 026125 182 E-GGMDAIKLE 191 (243)
Q Consensus 182 e-aGAdaVKLE 191 (243)
+ -...+||-+
T Consensus 161 ~~pnIvgiKd~ 171 (313)
T 3dz1_A 161 DSASCVMLKHE 171 (313)
T ss_dssp HCSSEEEEEEC
T ss_pred hCCCEEEEEcC
Confidence 3 568899986
|
| >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A | Back alignment and structure |
|---|
Probab=93.38 E-value=0.18 Score=44.71 Aligned_cols=74 Identities=12% Similarity=0.078 Sum_probs=55.0
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCcc-CCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLP-ITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~-vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~k 181 (243)
.|+.++++|+|.+++--. .-.. .|-++++.|.++|+++++.|+++=|.|- -++..+++.. .||
T Consensus 83 la~~A~~~Gadavlv~~P---------~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~----~~L-- 147 (288)
T 2nuw_A 83 LVKFSNEMDILGVSSHSP---------YYFPRLPEKFLAKYYEEIARISSHSLYIYNYPAATGYDIPPSIL----KSL-- 147 (288)
T ss_dssp HHHHHHTSCCSEEEECCC---------CSSCSCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHH----TTT--
T ss_pred HHHHHHhcCCCEEEEcCC---------cCCCCCCHHHHHHHHHHHHHhcCCCEEEEECchHhCcCCCHHHH----hcc--
Confidence 467788999999986522 2223 4789999999999999999999999994 2344566655 344
Q ss_pred HhCCCEEEeCCCC
Q 026125 182 EGGMDAIKLEGGS 194 (243)
Q Consensus 182 eaGAdaVKLEGg~ 194 (243)
...+||-..|.
T Consensus 148 --nIvgiKdssgd 158 (288)
T 2nuw_A 148 --PVKGIKDTNQD 158 (288)
T ss_dssp --TEEEEEECCSC
T ss_pred --EEEEEEeCCCC
Confidence 57889987774
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.29 E-value=0.37 Score=43.47 Aligned_cols=92 Identities=21% Similarity=0.219 Sum_probs=61.9
Q ss_pred CHHHHHHhhhCCCcEEE-EecCCHHHHHHHHHcCCCEEEe-CcchhhhhccCCCCccCCHHHHHHHHHHHHc-ccC-CCc
Q 026125 80 TLTHLRQKHKNGEPITM-VTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVAR-GAK-RPL 155 (243)
Q Consensus 80 tv~~Lr~~kk~g~~Itm-lTAYD~~sA~iae~AGiDiILV-GDSlgmv~lG~~dT~~vTldeMi~h~~aV~R-ga~-~~f 155 (243)
|+..-+.++++|=. ++ .+..|...|+.++++|+|+|+- |.-+|. -.|..+ .++ .+.|++ ..+ .|
T Consensus 113 tv~aa~~L~k~Gf~-Vlpy~~~D~~~ak~l~~~G~~aVmPlg~pIGs-G~Gi~~------~~~---L~~i~~~~~~~vP- 180 (268)
T 2htm_A 113 TLKAAERLIEEDFL-VLPYMGPDLVLAKRLAALGTATVMPLAAPIGS-GWGVRT------RAL---LELFAREKASLPP- 180 (268)
T ss_dssp HHHHHHHHHHTTCE-ECCEECSCHHHHHHHHHHTCSCBEEBSSSTTT-CCCSTT------HHH---HHHHHHTTTTSSC-
T ss_pred HHHHHHHHHHCCCE-EeeccCCCHHHHHHHHhcCCCEEEecCccCcC-CcccCC------HHH---HHHHHHhcCCCCe-
Confidence 66777777777643 44 4679999999999999999976 433444 223332 233 455555 444 56
Q ss_pred EEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 026125 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (243)
Q Consensus 156 vVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEG 192 (243)
||+| |+. .+++++ .+.| |.|||+|-+-.
T Consensus 181 VI~~---GGI-~tpsDA----a~Am-eLGAdgVlVgS 208 (268)
T 2htm_A 181 VVVD---AGL-GLPSHA----AEVM-ELGLDAVLVNT 208 (268)
T ss_dssp BEEE---SCC-CSHHHH----HHHH-HTTCCEEEESH
T ss_pred EEEe---CCC-CCHHHH----HHHH-HcCCCEEEECh
Confidence 5666 566 588998 5667 69999998843
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=93.29 E-value=0.11 Score=46.24 Aligned_cols=78 Identities=18% Similarity=0.205 Sum_probs=56.0
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~ke 182 (243)
.|+.++++|+|.+++-= |.-...+-++++.|.++|+++++.|+++=|.|- .++..+++.. .||.+-
T Consensus 88 la~~a~~~Gadavlv~~---------P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~----~~La~~ 154 (292)
T 2ojp_A 88 LTQRFNDSGIVGCLTVT---------PYYNRPSQEGLYQHFKAIAEHTDLPQILYNVPSRTGCDLLPETV----GRLAKV 154 (292)
T ss_dssp HHHHTTTSSCSEEEEEC---------CCSSCCCHHHHHHHHHHHHTTCSSCEEEECCHHHHSCCCCHHHH----HHHHTS
T ss_pred HHHHHHhcCCCEEEECC---------CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcchhccCCCHHHH----HHHHcC
Confidence 46678889999887641 222234789999999999999999999999995 2344577766 455544
Q ss_pred hCCCEEEeCCCC
Q 026125 183 GGMDAIKLEGGS 194 (243)
Q Consensus 183 aGAdaVKLEGg~ 194 (243)
-...+||-..|.
T Consensus 155 pnivgiK~s~gd 166 (292)
T 2ojp_A 155 KNIIGIXEATGN 166 (292)
T ss_dssp TTEEEC-CCSCC
T ss_pred CCEEEEeCCCCC
Confidence 567888987764
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=93.28 E-value=0.57 Score=43.53 Aligned_cols=80 Identities=25% Similarity=0.335 Sum_probs=49.8
Q ss_pred cEEEE-ecCCHHHHHHHHHcCCCEEEeCcchhhhh-----ccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCc
Q 026125 93 PITMV-TAYDYPSAVHLDSAGIDICLVGDSAAMVV-----HGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYE 166 (243)
Q Consensus 93 ~Itml-TAYD~~sA~iae~AGiDiILVGDSlgmv~-----lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~ 166 (243)
..++. ++-+...|+.+.++|+|+|.||-.-|... .|.. ++ .+...+.+++... .|++|=..
T Consensus 142 ~~Vi~G~V~T~e~A~~a~~aGaD~I~Vg~g~G~~~~tr~~~g~g----~p---~l~aI~~~~~~~~--PVIAdGGI---- 208 (361)
T 3r2g_A 142 RCIMAGNVATYAGADYLASCGADIIKAGIGGGSVCSTRIKTGFG----VP---MLTCIQDCSRADR--SIVADGGI---- 208 (361)
T ss_dssp CEEEEEEECSHHHHHHHHHTTCSEEEECCSSSSCHHHHHHHCCC----CC---HHHHHHHHTTSSS--EEEEESCC----
T ss_pred CeEEEcCcCCHHHHHHHHHcCCCEEEEcCCCCcCccccccCCcc----HH---HHHHHHHHHHhCC--CEEEECCC----
Confidence 34455 78999999999999999999863222111 1111 12 1222334444443 47888444
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 167 SSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 167 ~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
.+.+++ .+.+ +.|||+|.+
T Consensus 209 ~~~~di----~kAL-a~GAd~V~i 227 (361)
T 3r2g_A 209 KTSGDI----VKAL-AFGADFVMI 227 (361)
T ss_dssp CSHHHH----HHHH-HTTCSEEEE
T ss_pred CCHHHH----HHHH-HcCCCEEEE
Confidence 366777 4567 489999998
|
| >3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A* | Back alignment and structure |
|---|
Probab=93.27 E-value=0.76 Score=42.38 Aligned_cols=140 Identities=15% Similarity=0.125 Sum_probs=87.3
Q ss_pred CHHHHHHhhh-CCCcEEEEecCCH-----HHHHHHHHcCCCEEE-eCcchhhhhc----cCCCCccCCHHHHH-HHHHHH
Q 026125 80 TLTHLRQKHK-NGEPITMVTAYDY-----PSAVHLDSAGIDICL-VGDSAAMVVH----GHDTTLPITLEEML-VHCRAV 147 (243)
Q Consensus 80 tv~~Lr~~kk-~g~~ItmlTAYD~-----~sA~iae~AGiDiIL-VGDSlgmv~l----G~~dT~~vTldeMi-~h~~aV 147 (243)
.+..+++.++ +++-|+=+|+++. .-.+++++.|+.+|. +|.=...... =.......+.|+|. ...+.|
T Consensus 85 ~~~~l~~~k~~Gg~tIVd~T~~g~GRd~~~l~~is~~tGv~IV~~TG~y~~~~~~p~~~~~~~~~~~~~e~l~~~~i~Ei 164 (360)
T 3tn4_A 85 AVEAAEKMKRHGIQTVVDPTPNDCGRNPAFLRRVAEETGLNIICATGYYYEGEGAPPYFQFRRLLGTAEDDIYDMFMAEL 164 (360)
T ss_dssp HHHHHHHHHHTTCCEEEECCCTTTTCCHHHHHHHHHHHCCEEEEEECCCCGGGSCTHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEECCCCCcCcCHHHHHHHHHHcCCCEEEeCccccCcccCCcccchhhhcccCHHHHHHHHHHHH
Confidence 3455665555 4578888899886 678899999999985 7743211000 00011223456654 334667
Q ss_pred HcccCCC----cEE-eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEE-EeCCCCCchHHHHHHHHHcCCc----eeeccCC
Q 026125 148 ARGAKRP----LLV-GDLPFGTYESSTNQAVDTAVRILKEGGMDAI-KLEGGSPSRITAARGIVEAGIA----VMGHVGL 217 (243)
Q Consensus 148 ~Rga~~~----fvV-aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaV-KLEGg~~~~~~~i~~L~~~GIP----V~GHiGL 217 (243)
..|...+ =+| .-..++......+.+++.+.++-+|.|+-.+ +...+. ...+.++.|.+.|+| |++|..+
T Consensus 165 ~~Gi~~tgikaG~I~~~~~~~~~t~~E~k~frA~a~aa~etG~Pv~iHt~~~~-~~~e~l~iL~eeG~~~~~vvi~H~~~ 243 (360)
T 3tn4_A 165 TEGIADTGIKAGVIKLASSKGRITEYEKMFFRAAARAQKETGAVIITHTQEGT-MGPEQAAYLLEHGADPKKIVIGHMCD 243 (360)
T ss_dssp HTCSTTSCCCCSEEEEECBTTBCCHHHHHHHHHHHHHHHHHCCEEEEECSTTC-CHHHHHHHHHHTTCCGGGEEECCGGG
T ss_pred HhccccCCCcceEEEEEccCCCCCHHHHHHHHHHHHHHHHhCCcEEEEcCccc-CCHHHHHHHHHcCCCCCceEEEcCCC
Confidence 7766432 222 2222333433455699999999999997654 555554 344567889999997 9999987
Q ss_pred ccc
Q 026125 218 TPQ 220 (243)
Q Consensus 218 tPQ 220 (243)
++.
T Consensus 244 ~~d 246 (360)
T 3tn4_A 244 NTD 246 (360)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=93.24 E-value=0.57 Score=45.33 Aligned_cols=90 Identities=14% Similarity=0.082 Sum_probs=61.5
Q ss_pred HHHHHHHHcCCCEEEeCc-chhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGD-SAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGD-Slgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
..|+.++++|+|.|++-| +-....-|+ | +...+.|++.++.| ||+. |+. .|++++ .++++
T Consensus 456 e~a~~~~~~Ga~~il~t~~~~dG~~~G~-d---------~~li~~l~~~~~iP-VIas---GGi-~s~~d~----~~~~~ 516 (555)
T 1jvn_A 456 ELTRACEALGAGEILLNCIDKDGSNSGY-D---------LELIEHVKDAVKIP-VIAS---SGA-GVPEHF----EEAFL 516 (555)
T ss_dssp HHHHHHHHTTCCEEEECCGGGTTTCSCC-C---------HHHHHHHHHHCSSC-EEEC---SCC-CSHHHH----HHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCCC-C---------HHHHHHHHHhCCcc-EEEE---CCC-CCHHHH----HHHHH
Confidence 578999999999998754 222222343 2 34456777778778 5554 455 477887 55665
Q ss_pred HhCCCEEEeC----CCCCchHHHHHHHHHcCCce
Q 026125 182 EGGMDAIKLE----GGSPSRITAARGIVEAGIAV 211 (243)
Q Consensus 182 eaGAdaVKLE----Gg~~~~~~~i~~L~~~GIPV 211 (243)
+.||++|-+- ++.....++.+.|.++||||
T Consensus 517 ~~G~~gvivg~a~~~~~~~~~e~~~~l~~~gi~~ 550 (555)
T 1jvn_A 517 KTRADACLGAGMFHRGEFTVNDVKEYLLEHGLKV 550 (555)
T ss_dssp HSCCSEEEESHHHHTTSCCHHHHHHHHHHTTCCC
T ss_pred hcCChHHHHHHHHHcCCCCHHHHHHHHHHCCCcc
Confidence 5899999763 23445667778899999997
|
| >3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; 2.00A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
Probab=93.12 E-value=0.19 Score=44.62 Aligned_cols=70 Identities=9% Similarity=0.063 Sum_probs=52.1
Q ss_pred HHcccCCCcE--EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC-------CCchHHHHHHHHHcCCceeeccCC
Q 026125 147 VARGAKRPLL--VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG-------SPSRITAARGIVEAGIAVMGHVGL 217 (243)
Q Consensus 147 V~Rga~~~fv--VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg-------~~~~~~~i~~L~~~GIPV~GHiGL 217 (243)
.++..|.-|+ ++=+|. .+++.+++-..|.+++.|+.+||+... .+....+.+++.+.|+||+=|.|.
T Consensus 89 ~~~~~p~rf~g~~a~vp~----~~~~~a~~el~r~~~~~G~~Gv~l~~~~~~~~l~d~~~~p~~~~~~e~g~pv~iH~g~ 164 (312)
T 3ij6_A 89 LVDQHPGKFAGAVAILPM----NNIESACKVISSIKDDENLVGAQIFTRHLGKSIADKEFRPVLAQAAKLHVPLWMHPVF 164 (312)
T ss_dssp HHHHCTTTEEEEEEECCT----TCHHHHHHHHHHHHHCTTEEEEEEESEETTEETTSTTTHHHHHHHHHTTCCEEEECCC
T ss_pred HHHhCCCceeeeEEecCc----cCHHHHHHHHHHHHHhCCCceEeccCCCCCCCCCCccHHHHHHHHHHcCCeEEEcCCC
Confidence 4445666665 566665 257888888888887789999998731 234567789999999999999997
Q ss_pred ccc
Q 026125 218 TPQ 220 (243)
Q Consensus 218 tPQ 220 (243)
.++
T Consensus 165 ~~~ 167 (312)
T 3ij6_A 165 DAR 167 (312)
T ss_dssp CTT
T ss_pred CCC
Confidence 554
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=92.98 E-value=0.68 Score=42.14 Aligned_cols=105 Identities=13% Similarity=0.148 Sum_probs=68.5
Q ss_pred CCCCHHHHHHh---hhCCCcEEEEecCCHHHHHHHHHcCCCEEEe--C----cchhhhhccCCCCccCCHHHHH----HH
Q 026125 77 QRVTLTHLRQK---HKNGEPITMVTAYDYPSAVHLDSAGIDICLV--G----DSAAMVVHGHDTTLPITLEEML----VH 143 (243)
Q Consensus 77 ~~~tv~~Lr~~---kk~g~~ItmlTAYD~~sA~iae~AGiDiILV--G----DSlgmv~lG~~dT~~vTldeMi----~h 143 (243)
+.+++.+.-++ -++..-++++.++|...|+.+.++|.|+|++ | ..+|. ...+++++-. ..
T Consensus 145 ~gm~~~~eve~I~~A~~~gL~Ti~~v~~~eeA~amA~agpDiI~~h~glT~gglIG~-------~~avs~~~~~e~i~~i 217 (286)
T 2p10_A 145 TGMSYAQEVEMIAEAHKLDLLTTPYVFSPEDAVAMAKAGADILVCHMGLTTGGAIGA-------RSGKSMDDCVSLINEC 217 (286)
T ss_dssp TTCCHHHHHHHHHHHHHTTCEECCEECSHHHHHHHHHHTCSEEEEECSCC----------------CCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHcCCCEEEECCCCCCCCcccC-------CCcccHHHhHHHHHHH
Confidence 34566554332 2355689999999999999999999999973 4 33332 3457888833 44
Q ss_pred HHHHHcccCCCcEEeeC-CCCCCcCCHHHHHHHHHHHHHHh--CCCEEEeCCCCCch
Q 026125 144 CRAVARGAKRPLLVGDL-PFGTYESSTNQAVDTAVRILKEG--GMDAIKLEGGSPSR 197 (243)
Q Consensus 144 ~~aV~Rga~~~fvVaDm-PfgsY~~s~e~Av~nA~Rl~kea--GAdaVKLEGg~~~~ 197 (243)
.+++++-.|+.++++.= |. .+++++ ...++ . |++++..--+-+..
T Consensus 218 ~~a~~~vnpdvivLc~gGpI----stpeDv----~~~l~-~t~G~~G~~gASsier~ 265 (286)
T 2p10_A 218 IEAARTIRDDIIILSHGGPI----ANPEDA----RFILD-SCQGCHGFYGASSMERL 265 (286)
T ss_dssp HHHHHHHCSCCEEEEESTTC----CSHHHH----HHHHH-HCTTCCEEEESHHHHHH
T ss_pred HHHHHHhCCCcEEEecCCCC----CCHHHH----HHHHh-cCCCccEEEeehhhhcC
Confidence 55566666788777765 55 467887 34553 4 79999886664443
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=92.95 E-value=0.3 Score=46.55 Aligned_cols=99 Identities=24% Similarity=0.420 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 102 ~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
...|..+.++|+|+|.++-+ +|+ .+..+...+.+++..+...+++ |+. .+.+++ .++.
T Consensus 231 ~~~a~~l~~aG~d~I~id~a-----~g~-------~~~~~~~v~~i~~~~p~~~Vi~----g~v-~t~e~a----~~l~- 288 (490)
T 4avf_A 231 GERVAALVAAGVDVVVVDTA-----HGH-------SKGVIERVRWVKQTFPDVQVIG----GNI-ATAEAA----KALA- 288 (490)
T ss_dssp HHHHHHHHHTTCSEEEEECS-----CCS-------BHHHHHHHHHHHHHCTTSEEEE----EEE-CSHHHH----HHHH-
T ss_pred HHHHHHHhhcccceEEeccc-----CCc-------chhHHHHHHHHHHHCCCceEEE----eee-CcHHHH----HHHH-
Confidence 56778888999999987633 232 1234455567777765534444 223 467766 4555
Q ss_pred HhCCCEEEeCCC--CC-----------chHHHHHHHHH----cCCceeeccCC-ccccc
Q 026125 182 EGGMDAIKLEGG--SP-----------SRITAARGIVE----AGIAVMGHVGL-TPQAI 222 (243)
Q Consensus 182 eaGAdaVKLEGg--~~-----------~~~~~i~~L~~----~GIPV~GHiGL-tPQ~~ 222 (243)
++|||+|++-.| .. -....+..+.+ .+|||++==|+ +|..+
T Consensus 289 ~aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di 347 (490)
T 4avf_A 289 EAGADAVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDL 347 (490)
T ss_dssp HTTCSEEEECSSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHH
T ss_pred HcCCCEEEECCCCCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHH
Confidence 699999998211 10 01222333443 48999997777 56554
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=92.87 E-value=0.92 Score=41.14 Aligned_cols=133 Identities=18% Similarity=0.196 Sum_probs=76.0
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEE-E-eC--cchhhhhcc----CCCCccCCHHH----HHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC-L-VG--DSAAMVVHG----HDTTLPITLEE----MLVHC 144 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiI-L-VG--DSlgmv~lG----~~dT~~vTlde----Mi~h~ 144 (243)
+.+|..++++..+. | ...|+.+.+||||.| + .+ .=+...+-= ..|.-.-+++. .++-+
T Consensus 140 ~~mt~~eI~~ii~~---------f-~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv 209 (349)
T 3hgj_A 140 EPLDEAGMERILQA---------F-VEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVA 209 (349)
T ss_dssp EECCHHHHHHHHHH---------H-HHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHH---------H-HHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHH
Confidence 56899999887542 1 245677889999999 3 22 111110000 01221224543 46777
Q ss_pred HHHHcccCCCc-EEeeCCC-----CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC-C----------CchHHHHHHHHHc
Q 026125 145 RAVARGAKRPL-LVGDLPF-----GTYESSTNQAVDTAVRILKEGGMDAIKLEGG-S----------PSRITAARGIVEA 207 (243)
Q Consensus 145 ~aV~Rga~~~f-vVaDmPf-----gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg-~----------~~~~~~i~~L~~~ 207 (243)
++|++..+.-+ |...+.- +++ +.+++++.|.++- +.|+|.|.+-.| . ......++.+.++
T Consensus 210 ~aVR~avG~d~pV~vRls~~~~~~~g~--~~~~~~~la~~L~-~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~ 286 (349)
T 3hgj_A 210 QAVREVVPRELPLFVRVSATDWGEGGW--SLEDTLAFARRLK-ELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKR 286 (349)
T ss_dssp HHHHHHSCTTSCEEEEEESCCCSTTSC--CHHHHHHHHHHHH-HTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEEeccccccCCCC--CHHHHHHHHHHHH-HcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHH
Confidence 88888875433 3343321 233 6788888776665 689999998742 1 1122344555543
Q ss_pred -CCceeeccCC-ccccc
Q 026125 208 -GIAVMGHVGL-TPQAI 222 (243)
Q Consensus 208 -GIPV~GHiGL-tPQ~~ 222 (243)
+|||++==|+ +|+.+
T Consensus 287 ~~iPVi~~Ggi~t~e~a 303 (349)
T 3hgj_A 287 VGLRTGAVGLITTPEQA 303 (349)
T ss_dssp HCCEEEECSSCCCHHHH
T ss_pred cCceEEEECCCCCHHHH
Confidence 8999986444 35443
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=92.86 E-value=0.81 Score=41.08 Aligned_cols=97 Identities=11% Similarity=0.068 Sum_probs=55.7
Q ss_pred HHHHHhhh-CCCcEEEEec---CCHHHHHHHHHcCCCEEEeCcchhhh--------hcc----CCCCccCCHHHHHHHHH
Q 026125 82 THLRQKHK-NGEPITMVTA---YDYPSAVHLDSAGIDICLVGDSAAMV--------VHG----HDTTLPITLEEMLVHCR 145 (243)
Q Consensus 82 ~~Lr~~kk-~g~~ItmlTA---YD~~sA~iae~AGiDiILVGDSlgmv--------~lG----~~dT~~vTldeMi~h~~ 145 (243)
..+++.++ -+.|+.+-.+ +|...|+.+.++|+|.|.+...-+.. -++ ..+..+-+.+ .+ +
T Consensus 168 ~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~-~l---~ 243 (349)
T 1p0k_A 168 KRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAA-SL---A 243 (349)
T ss_dssp HHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHH-HH---H
T ss_pred HHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHH-HH---H
Confidence 33444332 3678877554 78999999999999999764332210 000 0122233333 33 3
Q ss_pred HHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 146 AVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 146 aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
.|++..+...|+++= +. .+.+++ .+.+. .|||+|.+-
T Consensus 244 ~v~~~~~~ipvia~G---GI-~~~~d~----~k~l~-~GAd~V~iG 280 (349)
T 1p0k_A 244 EIRSEFPASTMIASG---GL-QDALDV----AKAIA-LGASCTGMA 280 (349)
T ss_dssp HHHHHCTTSEEEEES---SC-CSHHHH----HHHHH-TTCSEEEEC
T ss_pred HHHHhcCCCeEEEEC---CC-CCHHHH----HHHHH-cCCCEEEEc
Confidence 444444344578874 44 378888 46664 799999983
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.82 E-value=0.31 Score=45.82 Aligned_cols=81 Identities=21% Similarity=0.299 Sum_probs=57.6
Q ss_pred HHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCC
Q 026125 106 VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGM 185 (243)
Q Consensus 106 ~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGA 185 (243)
...++||+|++=++ .| -+|-..-.+.|++..+.| |++|.=| . +..|++ .+ ++|+
T Consensus 53 ~~l~~aG~diVRva---------vp------~~~~a~al~~I~~~~~vP-lvaDiHf-~----~~lal~----a~-e~G~ 106 (366)
T 3noy_A 53 KRLYEAGCEIVRVA---------VP------HKEDVEALEEIVKKSPMP-VIADIHF-A----PSYAFL----SM-EKGV 106 (366)
T ss_dssp HHHHHTTCCEEEEE---------CC------SHHHHHHHHHHHHHCSSC-EEEECCS-C----HHHHHH----HH-HTTC
T ss_pred HHHHHcCCCEEEeC---------CC------ChHHHHHHHHHHhcCCCC-EEEeCCC-C----HHHHHH----HH-HhCC
Confidence 44678999999764 11 123356677788888878 7999877 4 455543 45 5899
Q ss_pred CEEEeCCCC----CchHHHHHHHHHcCCcee
Q 026125 186 DAIKLEGGS----PSRITAARGIVEAGIAVM 212 (243)
Q Consensus 186 daVKLEGg~----~~~~~~i~~L~~~GIPV~ 212 (243)
|.+.|--|. +....+++...+.|||+-
T Consensus 107 dklRINPGNig~~~~~~~vv~~ak~~~~piR 137 (366)
T 3noy_A 107 HGIRINPGNIGKEEIVREIVEEAKRRGVAVR 137 (366)
T ss_dssp SEEEECHHHHSCHHHHHHHHHHHHHHTCEEE
T ss_pred CeEEECCcccCchhHHHHHHHHHHHcCCCEE
Confidence 999998763 233567899999999983
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.6 Score=44.80 Aligned_cols=66 Identities=15% Similarity=0.325 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCC-CcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR-PLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 102 ~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~-~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
...+..+-++|+|+|.+..+- |+ .+.++...+.+++..+. ++++.+ . .+.++| .+++
T Consensus 258 ~era~aLveaGvd~I~Id~a~-----g~-------~~~v~~~i~~i~~~~~~~~vi~g~-----v-~t~e~a----~~~~ 315 (511)
T 3usb_A 258 MTRIDALVKASVDAIVLDTAH-----GH-------SQGVIDKVKEVRAKYPSLNIIAGN-----V-ATAEAT----KALI 315 (511)
T ss_dssp HHHHHHHHHTTCSEEEEECSC-----TT-------SHHHHHHHHHHHHHCTTSEEEEEE-----E-CSHHHH----HHHH
T ss_pred HHHHHHHHhhccceEEecccc-----cc-------hhhhhhHHHHHHHhCCCceEEeee-----e-ccHHHH----HHHH
Confidence 455666788999999887442 21 23345566777776664 444344 3 366665 4555
Q ss_pred HHhCCCEEEe
Q 026125 181 KEGGMDAIKL 190 (243)
Q Consensus 181 keaGAdaVKL 190 (243)
++|||+|++
T Consensus 316 -~aGad~i~v 324 (511)
T 3usb_A 316 -EAGANVVKV 324 (511)
T ss_dssp -HHTCSEEEE
T ss_pred -HhCCCEEEE
Confidence 689999997
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=92.72 E-value=1.1 Score=40.69 Aligned_cols=108 Identities=10% Similarity=0.007 Sum_probs=67.3
Q ss_pred CCcEEEEecC---CHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHc-ccCCCcEEeeCCCCCCc
Q 026125 91 GEPITMVTAY---DYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR-GAKRPLLVGDLPFGTYE 166 (243)
Q Consensus 91 g~~ItmlTAY---D~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~R-ga~~~fvVaDmPfgsY~ 166 (243)
+-+|++++.. ..-....+.++|+|.+.+-+++.- .+++..+++..++ |...-+.+.| ++.
T Consensus 82 ~~~i~~l~~p~~~~~~~i~~a~~aGvd~v~I~~~~s~------------~~~~~~~i~~ak~~G~~v~~~~~~----a~~ 145 (345)
T 1nvm_A 82 HAQIATLLLPGIGSVHDLKNAYQAGARVVRVATHCTE------------ADVSKQHIEYARNLGMDTVGFLMM----SHM 145 (345)
T ss_dssp SSEEEEEECBTTBCHHHHHHHHHHTCCEEEEEEETTC------------GGGGHHHHHHHHHHTCEEEEEEES----TTS
T ss_pred CCEEEEEecCCcccHHHHHHHHhCCcCEEEEEEeccH------------HHHHHHHHHHHHHCCCEEEEEEEe----CCC
Confidence 5688888432 455667777899999987665532 1344444444443 3332222233 234
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc---CCceeecc
Q 026125 167 SSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA---GIAVMGHV 215 (243)
Q Consensus 167 ~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~---GIPV~GHi 215 (243)
.+++..++-+.++. +.||+.|.|-|-.. ....++++|.+. ++|+.-|.
T Consensus 146 ~~~e~~~~ia~~~~-~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~pi~~H~ 201 (345)
T 1nvm_A 146 IPAEKLAEQGKLME-SYGATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHA 201 (345)
T ss_dssp SCHHHHHHHHHHHH-HHTCSEEEEECTTCCCCHHHHHHHHHHHHHHSCTTSEEEEEC
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCccCHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 57888888776665 68999999987632 234556666654 58888773
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=92.64 E-value=0.59 Score=44.29 Aligned_cols=93 Identities=16% Similarity=0.323 Sum_probs=55.2
Q ss_pred HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 102 ~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
...|..+.++|+|+|.+.-+ +|++ +..+...+++++.. +.|+++.+. .+.++| .++.
T Consensus 257 ~~~a~~~~~aG~d~v~i~~~-----~G~~-------~~~~~~i~~i~~~~~~~pvi~~~v------~t~~~a----~~l~ 314 (514)
T 1jcn_A 257 KYRLDLLTQAGVDVIVLDSS-----QGNS-------VYQIAMVHYIKQKYPHLQVIGGNV------VTAAQA----KNLI 314 (514)
T ss_dssp HHHHHHHHHTTCSEEEECCS-----CCCS-------HHHHHHHHHHHHHCTTCEEEEEEE------CSHHHH----HHHH
T ss_pred HHHHHHHHHcCCCEEEeecc-----CCcc-------hhHHHHHHHHHHhCCCCceEeccc------chHHHH----HHHH
Confidence 45667788899999987432 3444 23345566777776 345433343 356665 5555
Q ss_pred HHhCCCEEEeCC--CCC------------c--hHHHHHHHHHc-CCceeeccCC
Q 026125 181 KEGGMDAIKLEG--GSP------------S--RITAARGIVEA-GIAVMGHVGL 217 (243)
Q Consensus 181 keaGAdaVKLEG--g~~------------~--~~~~i~~L~~~-GIPV~GHiGL 217 (243)
++|||+|++-. |.. . ....++.+.+. +|||++==|+
T Consensus 315 -~aGad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ipVia~GGI 367 (514)
T 1jcn_A 315 -DAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGI 367 (514)
T ss_dssp -HHTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGTCCEEEESCC
T ss_pred -HcCCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhCCCCEEEECCC
Confidence 68999999921 210 0 11223444443 8999986566
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=92.63 E-value=0.97 Score=41.96 Aligned_cols=91 Identities=18% Similarity=0.153 Sum_probs=55.9
Q ss_pred CCCCHHHHHHhhhCCCcEEEEec----CCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTA----YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK 152 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTA----YD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~ 152 (243)
+..++.++.+..++-+.++.... .+...+..+.++|+|+|.+--+. |++ +.++...+.+++..+
T Consensus 73 ~~~s~ee~~~~i~~~~~~~~~~~g~~~~~~e~~~~a~~aGvdvI~id~a~-----G~~-------~~~~e~I~~ir~~~~ 140 (361)
T 3r2g_A 73 RFMTIEENIQEFKKCKGPVFVSVGCTENELQRAEALRDAGADFFCVDVAH-----AHA-------KYVGKTLKSLRQLLG 140 (361)
T ss_dssp SCSCHHHHHHHHHTCCSCCBEEECSSHHHHHHHHHHHHTTCCEEEEECSC-----CSS-------HHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhhcceEEEEEcCCCHHHHHHHHHHHHcCCCEEEEeCCC-----CCc-------HhHHHHHHHHHHhcC
Confidence 34788888876655443333332 23456788889999988663222 332 233445566776655
Q ss_pred CCcEEe-eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 153 RPLLVG-DLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 153 ~~fvVa-DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
...|++ + - .++++| .+++ ++|||+|++
T Consensus 141 ~~~Vi~G~-----V-~T~e~A----~~a~-~aGaD~I~V 168 (361)
T 3r2g_A 141 SRCIMAGN-----V-ATYAGA----DYLA-SCGADIIKA 168 (361)
T ss_dssp TCEEEEEE-----E-CSHHHH----HHHH-HTTCSEEEE
T ss_pred CCeEEEcC-----c-CCHHHH----HHHH-HcCCCEEEE
Confidence 545565 3 2 467776 4555 699999998
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=92.61 E-value=0.81 Score=39.69 Aligned_cols=98 Identities=15% Similarity=0.203 Sum_probs=55.5
Q ss_pred HHHhhhC-CCcEEEE---ecCCHHH-HHHHHHcCCCEEEeCcch-hhhhccCCC-----------CccCCHHHHHHHHHH
Q 026125 84 LRQKHKN-GEPITMV---TAYDYPS-AVHLDSAGIDICLVGDSA-AMVVHGHDT-----------TLPITLEEMLVHCRA 146 (243)
Q Consensus 84 Lr~~kk~-g~~Itml---TAYD~~s-A~iae~AGiDiILVGDSl-gmv~lG~~d-----------T~~vTldeMi~h~~a 146 (243)
+++.++. +.|+.+- +..|... |+.++++|+|.|.+.+.. ++...+... +++......+...+.
T Consensus 156 i~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~ 235 (311)
T 1ep3_A 156 VKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQ 235 (311)
T ss_dssp HHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCChHHHHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHH
Confidence 3343333 5676653 3445444 899999999999764422 111111000 011112223456677
Q ss_pred HHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 147 VARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 147 V~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
+++..+.| |+++ |+. .|++++ .++++ .|||+|.+-
T Consensus 236 i~~~~~ip-via~---GGI-~~~~d~----~~~l~-~GAd~V~vg 270 (311)
T 1ep3_A 236 VAQDVDIP-IIGM---GGV-ANAQDV----LEMYM-AGASAVAVG 270 (311)
T ss_dssp HHTTCSSC-EEEC---SSC-CSHHHH----HHHHH-HTCSEEEEC
T ss_pred HHHhcCCC-EEEE---CCc-CCHHHH----HHHHH-cCCCEEEEC
Confidence 88777666 5554 345 377877 56674 789999884
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=92.52 E-value=1.4 Score=39.76 Aligned_cols=114 Identities=14% Similarity=0.263 Sum_probs=66.1
Q ss_pred HHHHHhhhCCCcEEEEecC---CHHHHHHHHHcC--CCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 82 THLRQKHKNGEPITMVTAY---DYPSAVHLDSAG--IDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 82 ~~Lr~~kk~g~~ItmlTAY---D~~sA~iae~AG--iDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
..+++.++.+-++..--.+ +...|+.+.++| +|+|.+.-+ .|+ .+......+.|++..+.+++
T Consensus 85 ~~i~~~~~~g~~v~v~~g~~~~~~~~a~~~~~~g~~~~~i~i~~~-----~G~-------~~~~~~~i~~lr~~~~~~~v 152 (336)
T 1ypf_A 85 SFIRDMQSRGLIASISVGVKEDEYEFVQQLAAEHLTPEYITIDIA-----HGH-------SNAVINMIQHIKKHLPESFV 152 (336)
T ss_dssp HHHHHHHHTTCCCEEEECCSHHHHHHHHHHHHTTCCCSEEEEECS-----SCC-------SHHHHHHHHHHHHHCTTSEE
T ss_pred HHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhcCCCCCEEEEECC-----CCC-------cHHHHHHHHHHHHhCCCCEE
Confidence 3355555556565542223 345577788889 998855211 232 12345556788888877767
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc---------------hHHHHHHHHHc-CCceeeccCC
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS---------------RITAARGIVEA-GIAVMGHVGL 217 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~---------------~~~~i~~L~~~-GIPV~GHiGL 217 (243)
+.. +. .++++| .+++ ++|||+|.+.+.... ....+..+.++ +|||++==|+
T Consensus 153 i~G----~v-~s~e~A----~~a~-~aGad~Ivvs~hgG~~~~~~~~~~~g~~g~~~~~l~~v~~~~~ipVIa~GGI 219 (336)
T 1ypf_A 153 IAG----NV-GTPEAV----RELE-NAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAASKPIIADGGI 219 (336)
T ss_dssp EEE----EE-CSHHHH----HHHH-HHTCSEEEECSSCSTTCHHHHHHSCSSTTCHHHHHHHHHHTCSSCEEEESCC
T ss_pred EEC----Cc-CCHHHH----HHHH-HcCCCEEEEecCCCceeecccccCcCCchhHHHHHHHHHHHcCCcEEEeCCC
Confidence 743 23 466766 5555 699999999432110 23334445554 7898874443
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.38 E-value=1.7 Score=39.39 Aligned_cols=91 Identities=20% Similarity=0.157 Sum_probs=61.1
Q ss_pred HHHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 104 sA~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
.|+-+.++|+|.+= +|+ .+++.+..+++|+++.+...+..|.. ++| +.+++++.+. .++
T Consensus 154 ~a~~~~~~Gf~~iKik~g~---------------~~~~~~e~v~avr~a~gd~~l~vD~n-~~~--~~~~a~~~~~-~l~ 214 (384)
T 2pgw_A 154 DAAVGHAQGERVFYLKVGR---------------GEKLDLEITAAVRGEIGDARLRLDAN-EGW--SVHDAINMCR-KLE 214 (384)
T ss_dssp HHHHHHHTTCCEEEEECCS---------------CHHHHHHHHHHHHTTSTTCEEEEECT-TCC--CHHHHHHHHH-HHG
T ss_pred HHHHHHHcCCCEEEECcCC---------------CHHHHHHHHHHHHHHcCCcEEEEecC-CCC--CHHHHHHHHH-HHH
Confidence 45556678999984 442 57777899999999886334568874 677 6899998875 455
Q ss_pred HhCCCEEEeCCCCC-chHHHHHHHHH-cCCceeecc
Q 026125 182 EGGMDAIKLEGGSP-SRITAARGIVE-AGIAVMGHV 215 (243)
Q Consensus 182 eaGAdaVKLEGg~~-~~~~~i~~L~~-~GIPV~GHi 215 (243)
+.|.+. +|.... ......+.|.+ .+|||++==
T Consensus 215 ~~~i~~--iEqP~~~~~~~~~~~l~~~~~iPI~~de 248 (384)
T 2pgw_A 215 KYDIEF--IEQPTVSWSIPAMAHVREKVGIPIVADQ 248 (384)
T ss_dssp GGCCSE--EECCSCTTCHHHHHHHHHHCSSCEEEST
T ss_pred hcCCCE--EeCCCChhhHHHHHHHHhhCCCCEEEeC
Confidence 678775 565422 11223455554 489999753
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.33 E-value=2.5 Score=38.37 Aligned_cols=110 Identities=18% Similarity=0.225 Sum_probs=67.2
Q ss_pred CcEEEEecCCHHHHHHHHHcCCCEE-EeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE-e---eCCCCCCc
Q 026125 92 EPITMVTAYDYPSAVHLDSAGIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-G---DLPFGTYE 166 (243)
Q Consensus 92 ~~ItmlTAYD~~sA~iae~AGiDiI-LVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV-a---DmPfgsY~ 166 (243)
+.+.-++++++.+|..|+++|.|-| |+ |.+. ...+ .-+... .+.+++..+.|+.+ . +=+| -|.
T Consensus 39 ~~~lEvc~~s~~~a~~A~~gGAdRIELc-~~l~-----~GGl-TPS~g~----i~~a~~~~~ipV~vMIRPRgGdF-~Ys 106 (287)
T 3iwp_A 39 GFLMEVCVDSVESAVNAERGGADRIELC-SGLS-----EGGT-TPSMGV----LQVVKQSVQIPVFVMIRPRGGDF-LYS 106 (287)
T ss_dssp CSEEEEEESSHHHHHHHHHHTCSEEEEC-BCGG-----GTCB-CCCHHH----HHHHHTTCCSCEEEECCSSSSCS-CCC
T ss_pred CceEEEEeCCHHHHHHHHHhCCCEEEEC-CCCC-----CCCC-CCCHHH----HHHHHHhcCCCeEEEEecCCCCc-ccC
Confidence 4678899999999999999999999 77 4431 1111 123332 24455666666444 2 2234 453
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeC----CCCCchHHHHHHHHHc--CCceeec
Q 026125 167 SSTNQAVDTAVRILKEGGMDAIKLE----GGSPSRITAARGIVEA--GIAVMGH 214 (243)
Q Consensus 167 ~s~e~Av~nA~Rl~keaGAdaVKLE----Gg~~~~~~~i~~L~~~--GIPV~GH 214 (243)
...-+.+..-++.+++.|||+|-+= +|.-... ..+.|.+. +++|.=|
T Consensus 107 ~~E~~~M~~dI~~~~~~GAdGvVfG~L~~dg~iD~~-~~~~Li~~a~~l~vTFH 159 (287)
T 3iwp_A 107 DREIEVMKADIRLAKLYGADGLVFGALTEDGHIDKE-LCMSLMAICRPLPVTFH 159 (287)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEECCBCTTSCBCHH-HHHHHHHHHTTSCEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeeeCCCCCcCHH-HHHHHHHHcCCCcEEEE
Confidence 2233577777888899999999983 4432223 34555543 3444433
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=92.27 E-value=2.2 Score=35.78 Aligned_cols=90 Identities=14% Similarity=0.112 Sum_probs=55.3
Q ss_pred HHHHHHHHcCCCEEEeCcc-hhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDS-AAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDS-lgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
..++.++++|+|.|++-+. -.....| ..+ ...+.+++..+.| ++++ |+- .+++++ .+++
T Consensus 155 e~~~~~~~~G~~~i~~~~~~~~g~~~g------~~~----~~~~~l~~~~~ip-via~---GGI-~~~~d~----~~~~- 214 (253)
T 1thf_D 155 DWVVEVEKRGAGEILLTSIDRDGTKSG------YDT----EMIRFVRPLTTLP-IIAS---GGA-GKMEHF----LEAF- 214 (253)
T ss_dssp HHHHHHHHTTCSEEEEEETTTTTSCSC------CCH----HHHHHHGGGCCSC-EEEE---SCC-CSHHHH----HHHH-
T ss_pred HHHHHHHHCCCCEEEEEeccCCCCCCC------CCH----HHHHHHHHhcCCC-EEEE---CCC-CCHHHH----HHHH-
Confidence 3478889999998876321 1111112 223 3445677766666 6776 344 356776 5566
Q ss_pred HhCCCEEEeCC----CCCchHHHHHHHHHcCCcee
Q 026125 182 EGGMDAIKLEG----GSPSRITAARGIVEAGIAVM 212 (243)
Q Consensus 182 eaGAdaVKLEG----g~~~~~~~i~~L~~~GIPV~ 212 (243)
++|||+|-+=. +.......++.|.++||||=
T Consensus 215 ~~Gadgv~vGsal~~~~~~~~~~~~~l~~~g~~~~ 249 (253)
T 1thf_D 215 LAGADAALAASVFHFREIDVRELKEYLKKHGVNVR 249 (253)
T ss_dssp HTTCSEEEESHHHHTTCSCHHHHHHHHHHTTCCCC
T ss_pred HcCChHHHHHHHHHcCCCCHHHHHHHHHHcCCccc
Confidence 58999997732 12134566788999999984
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=92.20 E-value=0.44 Score=42.65 Aligned_cols=92 Identities=13% Similarity=0.203 Sum_probs=63.8
Q ss_pred CCCcEEEEec--CCH----HHHHHHHHcCCCEEEeCcchhhhhccCCCCc--cCCHHHHHHHHHHHHcccCCCcEEeeCC
Q 026125 90 NGEPITMVTA--YDY----PSAVHLDSAGIDICLVGDSAAMVVHGHDTTL--PITLEEMLVHCRAVARGAKRPLLVGDLP 161 (243)
Q Consensus 90 ~g~~ItmlTA--YD~----~sA~iae~AGiDiILVGDSlgmv~lG~~dT~--~vTldeMi~h~~aV~Rga~~~fvVaDmP 161 (243)
+++.-++.++ .+. ..|+.++++|+|.+++-- |.-. ..|-++++.|.++|+++++.|+++=|.|
T Consensus 81 ~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~---------P~y~~~~~s~~~l~~~f~~ia~a~~lPiilYn~P 151 (307)
T 3s5o_A 81 PKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVT---------PCYYRGRMSSAALIHHYTKVADLSPIPVVLYSVP 151 (307)
T ss_dssp CTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEEC---------CCTTGGGCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred CCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcC---------CCcCCCCCCHHHHHHHHHHHHhhcCCCEEEEeCC
Confidence 3444445544 333 335688899999987631 1111 2578999999999999999999999998
Q ss_pred C-CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 162 F-GTYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 162 f-gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
- -++..+++.. .||.+--...+||-..|.
T Consensus 152 ~~tg~~l~~~~~----~~La~~pnIvgiKdssgd 181 (307)
T 3s5o_A 152 ANTGLDLPVDAV----VTLSQHPNIVGMXDSGGD 181 (307)
T ss_dssp HHHSCCCCHHHH----HHHHTSTTEEEEEECSCC
T ss_pred cccCCCCCHHHH----HHHhcCCCEEEEEcCCCC
Confidence 4 2344577766 455544568899988774
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=92.17 E-value=0.91 Score=41.20 Aligned_cols=129 Identities=17% Similarity=0.182 Sum_probs=72.9
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEE-E-eCc--chhhhhc----cCCCCccCCHHH----HHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC-L-VGD--SAAMVVH----GHDTTLPITLEE----MLVHC 144 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiI-L-VGD--Slgmv~l----G~~dT~~vTlde----Mi~h~ 144 (243)
+.+|..++++..+. | ...|+.+.+||+|.| + .+- =+...+- -..|.-.-+++. .++-+
T Consensus 132 ~~mt~~eI~~ii~~---------f-~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv 201 (340)
T 3gr7_A 132 KEMTKADIEETVQA---------F-QNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVI 201 (340)
T ss_dssp EECCHHHHHHHHHH---------H-HHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHH---------H-HHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHH
Confidence 56899999887541 1 235678889999999 4 221 0100000 001211224543 46778
Q ss_pred HHHHcccCCCcEEeeCC---CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC----------CchHHHHHHHHH-cCCc
Q 026125 145 RAVARGAKRPLLVGDLP---FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS----------PSRITAARGIVE-AGIA 210 (243)
Q Consensus 145 ~aV~Rga~~~fvVaDmP---fgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~----------~~~~~~i~~L~~-~GIP 210 (243)
++|++.++.|+.+ -+. |..-+.+.++.++.|.++. +.|+|.|.+-.|. ....+.++.+.+ -+||
T Consensus 202 ~avr~~v~~pv~v-Rls~~~~~~~g~~~~~~~~la~~L~-~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~iP 279 (340)
T 3gr7_A 202 DAVREVWDGPLFV-RISASDYHPDGLTAKDYVPYAKRMK-EQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIP 279 (340)
T ss_dssp HHHHHHCCSCEEE-EEESCCCSTTSCCGGGHHHHHHHHH-HTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCceEE-EeccccccCCCCCHHHHHHHHHHHH-HcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHcCCc
Confidence 8888888666444 221 2111235678888776665 6899999996431 112234455544 3799
Q ss_pred eeeccCC
Q 026125 211 VMGHVGL 217 (243)
Q Consensus 211 V~GHiGL 217 (243)
|++==|+
T Consensus 280 Vi~~GgI 286 (340)
T 3gr7_A 280 TGAVGLI 286 (340)
T ss_dssp EEEESSC
T ss_pred EEeeCCC
Confidence 9875444
|
| >4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D* | Back alignment and structure |
|---|
Probab=92.04 E-value=2 Score=39.45 Aligned_cols=90 Identities=10% Similarity=0.106 Sum_probs=57.0
Q ss_pred HHcCCCEEEeC-cchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee-CCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 026125 109 DSAGIDICLVG-DSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD-LPFGTYESSTNQAVDTAVRILKEGGMD 186 (243)
Q Consensus 109 e~AGiDiILVG-DSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD-mPfgsY~~s~e~Av~nA~Rl~keaGAd 186 (243)
++.|.|+|=+| .|- .|+..+++.+||...+++|++..+.| |+.| -.--+| ..++++.| ++ +|++
T Consensus 91 ~~~GAdiIDIg~eSt------rP~~~~vs~ee~~~~V~~v~~~~~vP-lsIDg~~~~T~---~~eV~eaA---le-agag 156 (323)
T 4djd_D 91 AEYGADLIYLKLDGA------DPEGANHSVDQCVATVKEVLQAVGVP-LVVVGCGDVEK---DHEVLEAV---AE-AAAG 156 (323)
T ss_dssp HTTCCSEEEEECGGG------CTTTTCCCHHHHHHHHHHHHHHCCSC-EEEECCSCHHH---HHHHHHHH---HH-HTTT
T ss_pred HHcCCCEEEEcCccC------CCCCCCCCHHHHHHHHHHHHhhCCce-EEEECCCCCCC---CHHHHHHH---HH-hcCC
Confidence 47799999776 443 56777899999999999999887766 5666 111112 23444444 43 4544
Q ss_pred ---EEE-eCCCCCchHHHHHHHHHcCCceee-c
Q 026125 187 ---AIK-LEGGSPSRITAARGIVEAGIAVMG-H 214 (243)
Q Consensus 187 ---aVK-LEGg~~~~~~~i~~L~~~GIPV~G-H 214 (243)
.|. +.+.. .+.+.....+.|.||+. |
T Consensus 157 ~~~lINsv~~~~--~~~m~~laa~~g~~vVlmh 187 (323)
T 4djd_D 157 ENLLLGNAEQEN--YKSLTAACMVHKHNIIARS 187 (323)
T ss_dssp SCCEEEEEBTTB--CHHHHHHHHHHTCEEEEEC
T ss_pred CCCeEEECCccc--HHHHHHHHHHhCCeEEEEc
Confidence 232 22221 24556667788999998 6
|
| >3nur_A Amidohydrolase; TIM barrel; 1.75A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=91.99 E-value=0.44 Score=43.36 Aligned_cols=69 Identities=10% Similarity=0.091 Sum_probs=49.9
Q ss_pred HcccCCCcEE-eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC-------CCchHHHHHHHHHcCCceeeccCCcc
Q 026125 148 ARGAKRPLLV-GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG-------SPSRITAARGIVEAGIAVMGHVGLTP 219 (243)
Q Consensus 148 ~Rga~~~fvV-aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg-------~~~~~~~i~~L~~~GIPV~GHiGLtP 219 (243)
++..|.-|+- +-+|. ..++.+++-..|.+++.|+.+||+.+. .+....+.+++.+.|+||+=|.|-.|
T Consensus 122 ~~~~P~Rf~g~a~v~~----~~~~~a~~El~r~~~~~G~~Gv~l~~~~~~~~~~d~~~~p~~~~~~e~g~pV~iH~g~~~ 197 (357)
T 3nur_A 122 IAQYPNRFVGFATLPI----NEPEAAAREFERCINDLGFKGALIMGRAQDGFLDQDKYDIIFKTAENLDVPIYLHPAPVN 197 (357)
T ss_dssp HHHSTTTEEECBCCCT----TSHHHHHHHHHHHHHTTCCCCEEEESCBTTBCTTSGGGHHHHHHHHHHTCCEEEECCCCC
T ss_pred HHhCCCEEEEEEeCCC----CCHHHHHHHHHHHHhhcCceEEEeCCCCCCCCCCCccHHHHHHHHHhcCCeEEEecCCCC
Confidence 3445555543 44443 146788888888888899999999731 23456778999999999999999866
Q ss_pred c
Q 026125 220 Q 220 (243)
Q Consensus 220 Q 220 (243)
.
T Consensus 198 ~ 198 (357)
T 3nur_A 198 S 198 (357)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* | Back alignment and structure |
|---|
Probab=91.96 E-value=1.8 Score=42.31 Aligned_cols=119 Identities=18% Similarity=0.153 Sum_probs=74.6
Q ss_pred HHHHHHhhhCCCcEEEEe------cC-------CHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHH
Q 026125 81 LTHLRQKHKNGEPITMVT------AY-------DYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAV 147 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlT------AY-------D~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV 147 (243)
+..|++.. .+-+|+|++ -| .-.+-..+.++|+|++-+-|++.-. +.|...++.+
T Consensus 87 lr~l~~~~-~~~~l~~L~R~~N~~G~~~ypddv~~~~ve~a~~aGvd~vrIf~s~sd~------------~ni~~~i~~a 153 (539)
T 1rqb_A 87 LRTFRKLM-PNSRLQMLLRGQNLLGYRHYNDEVVDRFVDKSAENGMDVFRVFDAMNDP------------RNMAHAMAAV 153 (539)
T ss_dssp HHHHHHHC-TTSCEEEEECGGGTTSSSCCCHHHHHHHHHHHHHTTCCEEEECCTTCCT------------HHHHHHHHHH
T ss_pred HHHHHHhC-CCCEEEEEeccccccCcccCcccccHHHHHHHHhCCCCEEEEEEehhHH------------HHHHHHHHHH
Confidence 34444432 467888887 23 1234566778999999887776322 5556666666
Q ss_pred HcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc---CCceeec
Q 026125 148 ARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA---GIAVMGH 214 (243)
Q Consensus 148 ~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~---GIPV~GH 214 (243)
++.-...-...++.+++ ..+++.+++.+.++. +.||+.|.|-|-.. ....+|++|.++ ++|+--|
T Consensus 154 k~~G~~v~~~i~~~~~~-~~~~e~~~~~a~~l~-~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~i~I~~H 226 (539)
T 1rqb_A 154 KKAGKHAQGTICYTISP-VHTVEGYVKLAGQLL-DMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLH 226 (539)
T ss_dssp HHTTCEEEEEEECCCST-TCCHHHHHHHHHHHH-HTTCSEEEEEETTCCCCHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred HHCCCeEEEEEEeeeCC-CCCHHHHHHHHHHHH-HcCCCEEEeCCCCCCcCHHHHHHHHHHHHHhcCCCceEEEE
Confidence 54332221235556644 358999999888777 68999999976522 244556666553 5676666
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=91.96 E-value=0.66 Score=41.66 Aligned_cols=74 Identities=16% Similarity=0.072 Sum_probs=55.0
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG 184 (243)
|+.++++|+|.+++-=. --...|-++++.|.++|+++++.|+++=|. + ...+++.. .||.+--.
T Consensus 99 a~~A~~~Gadavlv~~P---------~y~~~s~~~l~~~f~~va~a~~lPiilYn~--g-~~l~~~~~----~~La~~pn 162 (316)
T 3e96_A 99 GNAAKAAGADAVMIHMP---------IHPYVTAGGVYAYFRDIIEALDFPSLVYFK--D-PEISDRVL----VDLAPLQN 162 (316)
T ss_dssp HHHHHHHTCSEEEECCC---------CCSCCCHHHHHHHHHHHHHHHTSCEEEEEC--C-TTSCTHHH----HHHTTCTT
T ss_pred HHHHHhcCCCEEEEcCC---------CCCCCCHHHHHHHHHHHHHhCCCCEEEEeC--C-CCCCHHHH----HHHHcCCC
Confidence 56788999999986422 123458899999999999999999988875 2 23466655 45555456
Q ss_pred CCEEEeCCCC
Q 026125 185 MDAIKLEGGS 194 (243)
Q Consensus 185 AdaVKLEGg~ 194 (243)
..+||-..|.
T Consensus 163 IvgiKdssgd 172 (316)
T 3e96_A 163 LVGVKYAIND 172 (316)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEeCCCC
Confidence 8899998774
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=91.96 E-value=2.1 Score=35.93 Aligned_cols=91 Identities=20% Similarity=0.207 Sum_probs=55.6
Q ss_pred HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 102 ~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
...++.++++|++.+++-+ .. .-|... ... +...+.+++..+.| +++. |+- .+++++ .+++
T Consensus 155 ~e~~~~~~~~G~~~i~~~~-~~--~~g~~~--g~~----~~~i~~l~~~~~ip-via~---GGI-~~~~d~----~~~~- 215 (252)
T 1ka9_F 155 VEWAVKGVELGAGEILLTS-MD--RDGTKE--GYD----LRLTRMVAEAVGVP-VIAS---GGA-GRMEHF----LEAF- 215 (252)
T ss_dssp HHHHHHHHHHTCCEEEEEE-TT--TTTTCS--CCC----HHHHHHHHHHCSSC-EEEE---SCC-CSHHHH----HHHH-
T ss_pred HHHHHHHHHcCCCEEEEec-cc--CCCCcC--CCC----HHHHHHHHHHcCCC-EEEe---CCC-CCHHHH----HHHH-
Confidence 3557889999999876542 11 112111 122 34445677767777 5555 244 356776 5566
Q ss_pred HhCCCEEEeCC----CCCchHHHHHHHHHcCCce
Q 026125 182 EGGMDAIKLEG----GSPSRITAARGIVEAGIAV 211 (243)
Q Consensus 182 eaGAdaVKLEG----g~~~~~~~i~~L~~~GIPV 211 (243)
+.|||+|-+=. +........+.|.++||||
T Consensus 216 ~~Gadgv~vgsal~~~~~~~~~~~~~l~~~~~~~ 249 (252)
T 1ka9_F 216 QAGAEAALAASVFHFGEIPIPKLKRYLAEKGVHV 249 (252)
T ss_dssp HTTCSEEEESHHHHTTSSCHHHHHHHHHHTTCCB
T ss_pred HCCCHHHHHHHHHHcCCCCHHHHHHHHHHCCCCc
Confidence 58999998732 2223455678899999998
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=91.82 E-value=1.6 Score=39.83 Aligned_cols=99 Identities=17% Similarity=0.147 Sum_probs=65.6
Q ss_pred HHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 105 A~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
|+-+.++|++.+= +|+ -++++-+..+++|+++. +..-|..|.- ++| +.+++++.+.+ ++
T Consensus 153 a~~~~~~Gf~~vKik~g~--------------~~~~~~~e~v~avR~a~G~~~~l~vDan-~~~--~~~~a~~~~~~-l~ 214 (389)
T 2oz8_A 153 FSHAASIGYSAFKIKVGH--------------RDFDRDLRRLELLKTCVPAGSKVMIDPN-EAW--TSKEALTKLVA-IR 214 (389)
T ss_dssp HHHHHHTTCCEEEEECCC--------------SSHHHHHHHHHHHHTTSCTTCEEEEECT-TCB--CHHHHHHHHHH-HH
T ss_pred HHHHHHhCCCEEEEccCC--------------CCHHHHHHHHHHHHHhhCCCCeEEEECC-CCC--CHHHHHHHHHH-HH
Confidence 3444578999984 553 14567788999999987 4555678974 578 68999998866 55
Q ss_pred HhCCCEEEeCCCCCc-hHHHHHHHHHc--CCceeeccCCcccc
Q 026125 182 EGGMDAIKLEGGSPS-RITAARGIVEA--GIAVMGHVGLTPQA 221 (243)
Q Consensus 182 eaGAdaVKLEGg~~~-~~~~i~~L~~~--GIPV~GHiGLtPQ~ 221 (243)
+.|.+...+|..... ...-.+.|.+. +|||++-=.++|+.
T Consensus 215 ~~g~~i~~iEqP~~~~~~~~~~~l~~~~~~iPIa~dE~~~~~~ 257 (389)
T 2oz8_A 215 EAGHDLLWVEDPILRHDHDGLRTLRHAVTWTQINSGEYLDLQG 257 (389)
T ss_dssp HTTCCCSEEESCBCTTCHHHHHHHHHHCCSSEEEECTTCCHHH
T ss_pred hcCCCceEEeCCCCCcCHHHHHHHHhhCCCCCEEeCCCCCHHH
Confidence 655556678876421 12334667764 79999753335544
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=91.71 E-value=0.97 Score=37.82 Aligned_cols=109 Identities=16% Similarity=0.085 Sum_probs=62.3
Q ss_pred CHHHHHHhhhCCCcEEEEecCC------------HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHH
Q 026125 80 TLTHLRQKHKNGEPITMVTAYD------------YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAV 147 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD------------~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV 147 (243)
+-.++.+.. +++.++.+-+.+ ...|..++++|++.+.+. +. ...+.|
T Consensus 6 ~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~~~G~~~i~~~----------------~~----~~i~~i 64 (234)
T 1yxy_A 6 TKEKLMEQL-KGGIIVSCQALPGEPLYSETGGIMPLMAKAAQEAGAVGIRAN----------------SV----RDIKEI 64 (234)
T ss_dssp CHHHHHHHH-TTSCEEECCCCTTSTTCCTTCCSHHHHHHHHHHHTCSEEEEE----------------SH----HHHHHH
T ss_pred hHHHHHHHH-hCCEEEEeeCCCCCCCcCCccchHHHHHHHHHHCCCcEeecC----------------CH----HHHHHH
Confidence 334455555 455555555544 236778889999998764 11 336778
Q ss_pred HcccCCCcEE---eeCCCCCCcC-CHHHHHHHHHHHHHHhCCCEEEeCCCC------CchHHHHHHHHHc--CCceee
Q 026125 148 ARGAKRPLLV---GDLPFGTYES-STNQAVDTAVRILKEGGMDAIKLEGGS------PSRITAARGIVEA--GIAVMG 213 (243)
Q Consensus 148 ~Rga~~~fvV---aDmPfgsY~~-s~e~Av~nA~Rl~keaGAdaVKLEGg~------~~~~~~i~~L~~~--GIPV~G 213 (243)
++.++.||+. .|.|.+..-. .+.+.+ .++ .++|||.|.+.... .....+++.+.+. |++|..
T Consensus 65 ~~~~~~p~i~~~~~~~~~~~~~i~~~~~~i---~~~-~~~Gad~V~l~~~~~~~~~~~~~~~~i~~i~~~~~~~~v~~ 138 (234)
T 1yxy_A 65 QAITDLPIIGIIKKDYPPQEPFITATMTEV---DQL-AALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMA 138 (234)
T ss_dssp HTTCCSCEEEECBCCCTTSCCCBSCSHHHH---HHH-HTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEEE
T ss_pred HHhCCCCEEeeEcCCCCccccccCChHHHH---HHH-HHcCCCEEEEcccccCCCCCccHHHHHHHHHHhCCCCeEEE
Confidence 8888888642 3655433211 222322 333 47899999884431 1224456666666 666654
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=91.69 E-value=1.5 Score=39.80 Aligned_cols=92 Identities=29% Similarity=0.389 Sum_probs=56.9
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEe-CcchhhhhccCCCCc-----c----CCHHHHHHHHHHHHcc
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTL-----P----ITLEEMLVHCRAVARG 150 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILV-GDSlgmv~lG~~dT~-----~----vTldeMi~h~~aV~Rg 150 (243)
...+++.++.+. .++.++.+...|+.++++|+|.|++ |-..| |+..+. + ... +...+.|++.
T Consensus 135 ~~~i~~~~~~g~-~v~~~v~t~~~a~~a~~~GaD~i~v~g~~~G----Gh~g~~~~~~~~~~~~~~~---~~~l~~i~~~ 206 (369)
T 3bw2_A 135 REVIARLRRAGT-LTLVTATTPEEARAVEAAGADAVIAQGVEAG----GHQGTHRDSSEDDGAGIGL---LSLLAQVREA 206 (369)
T ss_dssp HHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEEECTTCS----EECCCSSCCGGGTTCCCCH---HHHHHHHHHH
T ss_pred HHHHHHHHHCCC-eEEEECCCHHHHHHHHHcCCCEEEEeCCCcC----CcCCCcccccccccccccH---HHHHHHHHHh
Confidence 345556555554 5677899999999999999999987 53221 222111 1 332 2334566666
Q ss_pred cCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 151 AKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 151 a~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
.+.| |+++ |+. .+++++ .+++ +.|||+|-+
T Consensus 207 ~~iP-Viaa---GGI-~~~~~~----~~~l-~~GAd~V~v 236 (369)
T 3bw2_A 207 VDIP-VVAA---GGI-MRGGQI----AAVL-AAGADAAQL 236 (369)
T ss_dssp CSSC-EEEE---SSC-CSHHHH----HHHH-HTTCSEEEE
T ss_pred cCce-EEEE---CCC-CCHHHH----HHHH-HcCCCEEEE
Confidence 6666 4555 344 366665 4566 479999987
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=91.67 E-value=1.6 Score=40.41 Aligned_cols=88 Identities=10% Similarity=0.060 Sum_probs=54.4
Q ss_pred CCcEEEEec---CCHHHHHHHHHcCCCEEEeCcchhhhh-----------ccCCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 91 GEPITMVTA---YDYPSAVHLDSAGIDICLVGDSAAMVV-----------HGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 91 g~~ItmlTA---YD~~sA~iae~AGiDiILVGDSlgmv~-----------lG~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
+.|+.+=.+ .+...|+.+.++|+|.|.|+..-|... .++.|.+.-|. +.+.. |+...+...|
T Consensus 206 ~~PVivK~vg~g~s~e~A~~l~~aGad~I~V~g~GGt~~a~ie~~r~~~~~~~~~~g~pt~-~~L~~---v~~~~~~ipv 281 (365)
T 3sr7_A 206 QLPFILKEVGFGMDVKTIQTAIDLGVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTA-QVLLN---AQPLMDKVEI 281 (365)
T ss_dssp CSCEEEEECSSCCCHHHHHHHHHHTCCEEECCCBC--------------CGGGTTCSCBHH-HHHHH---HGGGTTTSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCcccchhhccccccccccccccccHH-HHHHH---HHHhcCCCeE
Confidence 678777766 789999999999999998865544332 12223332233 33432 3222234447
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
++|= +. .+..++ .+.+ ..|||+|.+-
T Consensus 282 ia~G---GI-~~g~Dv----~KaL-alGAdaV~ig 307 (365)
T 3sr7_A 282 LASG---GI-RHPLDI----IKAL-VLGAKAVGLS 307 (365)
T ss_dssp EECS---SC-CSHHHH----HHHH-HHTCSEEEES
T ss_pred EEeC---CC-CCHHHH----HHHH-HcCCCEEEEC
Confidence 8874 44 377888 4566 4899999983
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=91.66 E-value=1 Score=39.59 Aligned_cols=128 Identities=12% Similarity=0.096 Sum_probs=77.1
Q ss_pred HHHHHhhhC-CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC---CCcEE
Q 026125 82 THLRQKHKN-GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK---RPLLV 157 (243)
Q Consensus 82 ~~Lr~~kk~-g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~---~~fvV 157 (243)
..++...+. +-+++++. .+......+-++|+|.|-+-++.+-...=+ -...+.+|.+..++.+.+.+. .. +.
T Consensus 62 e~~~~i~~~~~~~v~~l~-~n~~~i~~a~~~G~~~V~i~~~~S~~h~~~--~~~~~~~e~~~~~~~~v~~a~~~G~~-V~ 137 (295)
T 1ydn_A 62 EVMAGIRRADGVRYSVLV-PNMKGYEAAAAAHADEIAVFISASEGFSKA--NINCTIAESIERLSPVIGAAINDGLA-IR 137 (295)
T ss_dssp HHHHHSCCCSSSEEEEEC-SSHHHHHHHHHTTCSEEEEEEESCHHHHHH--HTSSCHHHHHHHHHHHHHHHHHTTCE-EE
T ss_pred HHHHHHHhCCCCEEEEEe-CCHHHHHHHHHCCCCEEEEEEecCHHHHHH--HcCCCHHHHHHHHHHHHHHHHHcCCe-EE
Confidence 334544333 56787776 677788888899999887654443110000 013477877776655544322 22 22
Q ss_pred ------eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC-----CchHHHHHHHHHc--CCceeecc
Q 026125 158 ------GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-----PSRITAARGIVEA--GIAVMGHV 215 (243)
Q Consensus 158 ------aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~-----~~~~~~i~~L~~~--GIPV~GHi 215 (243)
.+-|+.++ .+++++++-+.++. +.|||.|.|-|-. +...+++++|.+. ++|+.-|.
T Consensus 138 ~~l~~~~~~e~~~~-~~~~~~~~~~~~~~-~~G~d~i~l~Dt~G~~~P~~~~~lv~~l~~~~~~~~l~~H~ 206 (295)
T 1ydn_A 138 GYVSCVVECPYDGP-VTPQAVASVTEQLF-SLGCHEVSLGDTIGRGTPDTVAAMLDAVLAIAPAHSLAGHY 206 (295)
T ss_dssp EEEECSSEETTTEE-CCHHHHHHHHHHHH-HHTCSEEEEEETTSCCCHHHHHHHHHHHHTTSCGGGEEEEE
T ss_pred EEEEEEecCCcCCC-CCHHHHHHHHHHHH-hcCCCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 34566555 69999988876666 6999999998542 2234556666553 26666664
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=91.63 E-value=3.3 Score=39.53 Aligned_cols=117 Identities=21% Similarity=0.212 Sum_probs=71.6
Q ss_pred HHHHHHhhhCCCcEEEEe------cCC-------HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHH
Q 026125 81 LTHLRQKHKNGEPITMVT------AYD-------YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAV 147 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlT------AYD-------~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV 147 (243)
+..+++.. .+.+++|++ -|. -.+-..+.++|+|++-+-|++.-. +.|...++.+
T Consensus 70 l~~i~~~~-~~~~l~~l~R~~N~~G~~~~~ddv~~~~v~~a~~~Gvd~i~if~~~sd~------------~ni~~~i~~a 136 (464)
T 2nx9_A 70 LRLLKQAM-PNTPLQMLLRGQNLLGYRHYADDVVDTFVERAVKNGMDVFRVFDAMNDV------------RNMQQALQAV 136 (464)
T ss_dssp HHHHHHHC-SSSCEEEEECGGGTTSSSCCCHHHHHHHHHHHHHTTCCEEEECCTTCCT------------HHHHHHHHHH
T ss_pred HHHHHHhC-CCCeEEEEeccccccCcccccchhhHHHHHHHHhCCcCEEEEEEecCHH------------HHHHHHHHHH
Confidence 44444432 467888886 121 234466778999999887776322 4455555555
Q ss_pred HcccCCCcEEeeC--CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC-----CchHHHHHHHHHc-CCceeec
Q 026125 148 ARGAKRPLLVGDL--PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-----PSRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 148 ~Rga~~~fvVaDm--PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~-----~~~~~~i~~L~~~-GIPV~GH 214 (243)
++.- .. +.+++ -+ ++..+++..++.+.++. ++||+.|.|-|-. ..+..+|++|.++ ++|+--|
T Consensus 137 k~~G-~~-v~~~i~~~~-~~~~~~e~~~~~a~~l~-~~Gad~I~l~DT~G~~~P~~v~~lv~~l~~~~~~~i~~H 207 (464)
T 2nx9_A 137 KKMG-AH-AQGTLCYTT-SPVHNLQTWVDVAQQLA-ELGVDSIALKDMAGILTPYAAEELVSTLKKQVDVELHLH 207 (464)
T ss_dssp HHTT-CE-EEEEEECCC-CTTCCHHHHHHHHHHHH-HTTCSEEEEEETTSCCCHHHHHHHHHHHHHHCCSCEEEE
T ss_pred HHCC-CE-EEEEEEeee-CCCCCHHHHHHHHHHHH-HCCCCEEEEcCCCCCcCHHHHHHHHHHHHHhcCCeEEEE
Confidence 4422 22 33343 44 44458999999888777 6999999997642 2244556666553 6777666
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=91.55 E-value=1.8 Score=41.96 Aligned_cols=127 Identities=18% Similarity=0.098 Sum_probs=73.0
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCH-HHHHHHHHcCCCEEEeCcchhhhhccC-------CCCc------cCCH----H
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDY-PSAVHLDSAGIDICLVGDSAAMVVHGH-------DTTL------PITL----E 138 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~-~sA~iae~AGiDiILVGDSlgmv~lG~-------~dT~------~vTl----d 138 (243)
+.+|..++.+..+ || ..|+.+.++|||.|=+=-+ +|| |.+. .-++ .
T Consensus 129 ~~~t~~ei~~~i~-----------~~~~aA~~a~~aGfd~veih~~-----~gyl~~qFlsp~~n~r~d~yGgs~~~r~r 192 (671)
T 1ps9_A 129 HELSHEEILQLID-----------NFARCAQLAREAGYDGVEVMGS-----EGYLINEFLTLRTNQRSDQWGGDYRNRMR 192 (671)
T ss_dssp EECCHHHHHHHHH-----------HHHHHHHHHHHTTCSEEEEEEC-----BTSHHHHHHCTTTCCCCSTTSSSHHHHHH
T ss_pred ccCCHHHHHHHHH-----------HHHHHHHHHHHcCCCEEEEccc-----cchHHHHhCCCccCCCcCcCCCcHHHHHH
Confidence 3466666666543 22 4577889999999942111 233 2221 1123 3
Q ss_pred HHHHHHHHHHcccCCCcEE-e-----eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC--------------CchH
Q 026125 139 EMLVHCRAVARGAKRPLLV-G-----DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS--------------PSRI 198 (243)
Q Consensus 139 eMi~h~~aV~Rga~~~fvV-a-----DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~--------------~~~~ 198 (243)
-+++.+++|++..+..+.+ . |+-.+++ +.+++++.|.++- +.|+|.+.+-+|. ....
T Consensus 193 ~~~eiv~avr~~vG~~~~v~vrls~~~~~~~g~--~~~~~~~~a~~l~-~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~ 269 (671)
T 1ps9_A 193 FAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGG--TFAETVELAQAIE-AAGATIINTGIGWHEARIPTIATPVPRGAFS 269 (671)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCC--CHHHHHHHHHHHH-HHTCSEEEEEECBTTCSSCSSSTTSCTTTTH
T ss_pred HHHHHHHHHHHHcCCCceEEEEECccccCCCCC--CHHHHHHHHHHHH-hcCCCEEEcCCCccccccccccccCCcchHH
Confidence 3577888898887544333 2 4422344 6888888876655 6899999873221 0112
Q ss_pred HHHHHHHHc-CCceeeccCC-ccccc
Q 026125 199 TAARGIVEA-GIAVMGHVGL-TPQAI 222 (243)
Q Consensus 199 ~~i~~L~~~-GIPV~GHiGL-tPQ~~ 222 (243)
..++.+.+. +|||++==|+ +|+.+
T Consensus 270 ~~~~~i~~~~~iPvi~~Ggi~~~~~a 295 (671)
T 1ps9_A 270 WVTRKLKGHVSLPLVTTNRINDPQVA 295 (671)
T ss_dssp HHHHHHTTSCSSCEEECSSCCSHHHH
T ss_pred HHHHHHHHhcCceEEEeCCCCCHHHH
Confidence 345555543 7999885444 45443
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=91.51 E-value=0.54 Score=42.28 Aligned_cols=76 Identities=16% Similarity=0.118 Sum_probs=56.0
Q ss_pred HHHHHHHcCC-CEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGI-DICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 104 sA~iae~AGi-DiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~k 181 (243)
.|+.++++|. |.+++-- |.-...+-++++.|.++|+++++.|+++=|.|- -++..+++.. .||.+
T Consensus 94 la~~A~~~Ga~davlv~~---------P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~----~~La~ 160 (311)
T 3h5d_A 94 FVKEVAEFGGFAAGLAIV---------PYYNKPSQEGMYQHFKAIADASDLPIIIYNIPGRVVVELTPETM----LRLAD 160 (311)
T ss_dssp HHHHHHHSCCCSEEEEEC---------CCSSCCCHHHHHHHHHHHHHSCSSCEEEEECHHHHSSCCCHHHH----HHHHT
T ss_pred HHHHHHhcCCCcEEEEcC---------CCCCCCCHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCHHHH----HHHhc
Confidence 3567888886 9887642 222334789999999999999999999999993 2444677766 45555
Q ss_pred HhCCCEEEeCC
Q 026125 182 EGGMDAIKLEG 192 (243)
Q Consensus 182 eaGAdaVKLEG 192 (243)
.-...+||-..
T Consensus 161 ~pnIvgiKdss 171 (311)
T 3h5d_A 161 HPNIIGVKECT 171 (311)
T ss_dssp STTEEEEEECS
T ss_pred CCCEEEEEeCC
Confidence 45688999876
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=91.36 E-value=1.3 Score=41.65 Aligned_cols=66 Identities=20% Similarity=0.445 Sum_probs=44.2
Q ss_pred HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 102 ~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
...+..+.++|+|.+.+.-. .|++ ...+...+.+++..+ .|+++. +. .+.+++ .++.
T Consensus 239 ~~~a~~l~~aGvd~v~i~~~-----~G~~-------~~~~e~i~~i~~~~p~~pvi~g-----~~-~t~e~a----~~l~ 296 (494)
T 1vrd_A 239 MERVEKLVKAGVDVIVIDTA-----HGHS-------RRVIETLEMIKADYPDLPVVAG-----NV-ATPEGT----EALI 296 (494)
T ss_dssp HHHHHHHHHTTCSEEEECCS-----CCSS-------HHHHHHHHHHHHHCTTSCEEEE-----EE-CSHHHH----HHHH
T ss_pred HHHHHHHHHhCCCEEEEEec-----CCch-------HHHHHHHHHHHHHCCCceEEeC-----Cc-CCHHHH----HHHH
Confidence 35677788999999987533 3432 455667778888774 454442 22 467777 4445
Q ss_pred HHhCCCEEEe
Q 026125 181 KEGGMDAIKL 190 (243)
Q Consensus 181 keaGAdaVKL 190 (243)
++|||+|++
T Consensus 297 -~~G~d~I~v 305 (494)
T 1vrd_A 297 -KAGADAVKV 305 (494)
T ss_dssp -HTTCSEEEE
T ss_pred -HcCCCEEEE
Confidence 699999999
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=91.27 E-value=1.7 Score=39.76 Aligned_cols=90 Identities=17% Similarity=0.227 Sum_probs=48.6
Q ss_pred HHHHHhhhCCCcEEE-EecCC-HHHHHHHHHcCCCEEEeC-cchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEe
Q 026125 82 THLRQKHKNGEPITM-VTAYD-YPSAVHLDSAGIDICLVG-DSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (243)
Q Consensus 82 ~~Lr~~kk~g~~Itm-lTAYD-~~sA~iae~AGiDiILVG-DSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVa 158 (243)
..+++.++.+-++.. ++..+ ...+..++++|+|++.+- ... ..++-+. ..+++++ +.+++..+.|+++.
T Consensus 146 ~~i~~~~~~g~~v~~~v~~~~~~e~a~~~~~agad~i~i~~~~~---~~~~~~~-~~~~~~i----~~l~~~~~~pvi~g 217 (393)
T 2qr6_A 146 ERIAQVRDSGEIVAVRVSPQNVREIAPIVIKAGADLLVIQGTLI---SAEHVNT-GGEALNL----KEFIGSLDVPVIAG 217 (393)
T ss_dssp HHHHHHHHTTSCCEEEECTTTHHHHHHHHHHTTCSEEEEECSSC---CSSCCCC------CH----HHHHHHCSSCEEEE
T ss_pred HHHHHHhhcCCeEEEEeCCccHHHHHHHHHHCCCCEEEEeCCcc---ccccCCC-cccHHHH----HHHHHhcCCCEEEC
Confidence 334555555655444 33333 234677778999988652 221 1112111 1245543 35666677786653
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
+- .+++++ .+++ ++|||+|.+
T Consensus 218 -----gi-~t~e~a----~~~~-~~Gad~i~v 238 (393)
T 2qr6_A 218 -----GV-NDYTTA----LHMM-RTGAVGIIV 238 (393)
T ss_dssp -----CC-CSHHHH----HHHH-TTTCSEEEE
T ss_pred -----Cc-CCHHHH----HHHH-HcCCCEEEE
Confidence 33 477776 4555 699999999
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=91.10 E-value=2.9 Score=35.65 Aligned_cols=104 Identities=21% Similarity=0.131 Sum_probs=63.1
Q ss_pred HHHHHHHHHcCCCEE--EeCcchhhhhccCCCCccCCHHHHHHHHHHHHcc---cCCCcEE-eeCCCCCC---cCCHHHH
Q 026125 102 YPSAVHLDSAGIDIC--LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARG---AKRPLLV-GDLPFGTY---ESSTNQA 172 (243)
Q Consensus 102 ~~sA~iae~AGiDiI--LVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rg---a~~~fvV-aDmPfgsY---~~s~e~A 172 (243)
...+..+-++|+|.| .+-+. ..+.++++..++.|.+. .+.++++ .+ +.|.. ..+++ .
T Consensus 102 ~~~v~~a~~~Ga~~v~~~l~~~------------~~~~~~~~~~~~~v~~~~~~~g~~viv~~~-~~G~~l~~~~~~~-~ 167 (273)
T 2qjg_A 102 VTTVEEAIRMGADAVSIHVNVG------------SDEDWEAYRDLGMIAETCEYWGMPLIAMMY-PRGKHIQNERDPE-L 167 (273)
T ss_dssp CSCHHHHHHTTCSEEEEEEEET------------STTHHHHHHHHHHHHHHHHHHTCCEEEEEE-ECSTTCSCTTCHH-H
T ss_pred HHHHHHHHHcCCCEEEEEEecC------------CCCHHHHHHHHHHHHHHHHHcCCCEEEEeC-CCCcccCCCCCHh-H
Confidence 456777788999988 43221 11556666666666554 3566665 32 33220 02444 3
Q ss_pred HHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHH-HcCCceeeccCCcccc
Q 026125 173 VDTAVRILKEGGMDAIKLEGGSPSRITAARGIV-EAGIAVMGHVGLTPQA 221 (243)
Q Consensus 173 v~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~-~~GIPV~GHiGLtPQ~ 221 (243)
+..+.+...+.|||.|++.-+. -...++.+. ..+|||+++=|..+.+
T Consensus 168 ~~~~a~~a~~~Gad~i~~~~~~--~~~~l~~i~~~~~ipvva~GGi~~~~ 215 (273)
T 2qjg_A 168 VAHAARLGAELGADIVKTSYTG--DIDSFRDVVKGCPAPVVVAGGPKTNT 215 (273)
T ss_dssp HHHHHHHHHHTTCSEEEECCCS--SHHHHHHHHHHCSSCEEEECCSCCSS
T ss_pred HHHHHHHHHHcCCCEEEECCCC--CHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence 3444455567999999997432 134456666 4589999999998754
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=91.10 E-value=1 Score=40.61 Aligned_cols=89 Identities=10% Similarity=0.057 Sum_probs=61.1
Q ss_pred HHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 105 A~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
|+-+.++|+|.+= +|+ ++++-+..+++|+++.+ ..-+..|.- ++| +.+++++.+.++.+
T Consensus 154 a~~~~~~Gf~~iKik~g~---------------~~~~~~e~v~avr~a~g~~~~l~vDan-~~~--~~~~a~~~~~~l~~ 215 (371)
T 2ps2_A 154 VAKYRAKGYKGQSVKISG---------------EPVTDAKRITAALANQQPDEFFIVDAN-GKL--SVETALRLLRLLPH 215 (371)
T ss_dssp HHHHHTTTCCEEEEECCS---------------CHHHHHHHHHHHTTTCCTTCEEEEECT-TBC--CHHHHHHHHHHSCT
T ss_pred HHHHHHhChheEEeecCC---------------CHHHHHHHHHHHHHhcCCCCEEEEECC-CCc--CHHHHHHHHHHHHh
Confidence 4445578999984 553 36777899999999874 445678874 577 68999888766634
Q ss_pred HhCCCEEEeCCCCCchHHHHHHHHH-cCCceeecc
Q 026125 182 EGGMDAIKLEGGSPSRITAARGIVE-AGIAVMGHV 215 (243)
Q Consensus 182 eaGAdaVKLEGg~~~~~~~i~~L~~-~GIPV~GHi 215 (243)
+.|. .+|..... ..-.+.|.+ .+|||++-=
T Consensus 216 ~~~i---~iE~P~~~-~~~~~~l~~~~~iPI~~dE 246 (371)
T 2ps2_A 216 GLDF---ALEAPCAT-WRECISLRRKTDIPIIYDE 246 (371)
T ss_dssp TCCC---EEECCBSS-HHHHHHHHTTCCSCEEEST
T ss_pred hcCC---cCcCCcCC-HHHHHHHHhhCCCCEEeCC
Confidence 5554 68876542 333566665 389999853
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=91.09 E-value=2.1 Score=37.26 Aligned_cols=90 Identities=21% Similarity=0.179 Sum_probs=54.3
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEe-CcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILV-GDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
+...++..+.|-.+..+++.|...++.++++|.|.|.. |.-. |-. +...+. +. .+.|++..+.| ++++
T Consensus 116 ~~~a~~~~~~g~~vi~~~~~~~~~a~~~~~~gad~v~~~~~~~-----Gt~-~~~~~~-~~---l~~i~~~~~iP-viv~ 184 (264)
T 1xm3_A 116 LKASEQLLEEGFIVLPYTSDDVVLARKLEELGVHAIMPGASPI-----GSG-QGILNP-LN---LSFIIEQAKVP-VIVD 184 (264)
T ss_dssp HHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTCSCBEECSSST-----TCC-CCCSCH-HH---HHHHHHHCSSC-BEEE
T ss_pred HHHHHHHHCCCeEEEEEcCCCHHHHHHHHHhCCCEEEECCccc-----CCC-CCCCCH-HH---HHHHHhcCCCC-EEEE
Confidence 33444444446666557888888999999999998843 2111 211 112232 33 34555556666 5555
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
- +- .+++++ .+++ +.|||+|-+
T Consensus 185 g---GI-~t~eda----~~~~-~~GAdgViV 206 (264)
T 1xm3_A 185 A---GI-GSPKDA----AYAM-ELGADGVLL 206 (264)
T ss_dssp S---CC-CSHHHH----HHHH-HTTCSEEEE
T ss_pred e---CC-CCHHHH----HHHH-HcCCCEEEE
Confidence 3 33 367887 5566 589999987
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=90.96 E-value=5.7 Score=35.28 Aligned_cols=132 Identities=16% Similarity=0.204 Sum_probs=78.9
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHH-------HHHHH---HHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYP-------SAVHL---DSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRA 146 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~-------sA~ia---e~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~a 146 (243)
++.+...| +|--..++|.||.- ..+++ -++|+|-|++..|-|= ...+|.||-..-.+.
T Consensus 10 ~~~~~~~~-----~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE-------~~~Ls~~Er~~v~~~ 77 (304)
T 3cpr_A 10 AKTGVEHF-----GTVGVAMVTPFTESGDIDIAAGREVAAYLVDKGLDSLVLAGTTGE-------SPTTTAAEKLELLKA 77 (304)
T ss_dssp CCTTHHHH-----CSEEEECCCCBCTTSCBCHHHHHHHHHHHHHTTCCEEEESSTTTT-------TTTSCHHHHHHHHHH
T ss_pred hhccCCCC-----CceEEeeeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccC-------hhhCCHHHHHHHHHH
Confidence 45555543 34445666777531 23333 3679999876655432 124788887777777
Q ss_pred HHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC------CchHHHHHHHHH-cCCceee-----
Q 026125 147 VARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS------PSRITAARGIVE-AGIAVMG----- 213 (243)
Q Consensus 147 V~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~------~~~~~~i~~L~~-~GIPV~G----- 213 (243)
+++.+. +..|++... + .|.+++++.+...- +.|||++-+---. +....-.+++.+ .++||+=
T Consensus 78 ~~~~~~grvpviaGvg--~--~st~~ai~la~~A~-~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~ 152 (304)
T 3cpr_A 78 VREEVGDRAKLIAGVG--T--NNTRTSVELAEAAA-SAGADGLLVVTPYYSKPSQEGLLAHFGAIAAATEVPICLYDIPG 152 (304)
T ss_dssp HHHHHTTTSEEEEECC--C--SCHHHHHHHHHHHH-HTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHH
T ss_pred HHHHhCCCCcEEecCC--C--CCHHHHHHHHHHHH-hcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 766543 444676653 3 47899999886654 7999999764321 112223455665 4788763
Q ss_pred --ccCCcccccccc
Q 026125 214 --HVGLTPQAISVL 225 (243)
Q Consensus 214 --HiGLtPQ~~~~~ 225 (243)
++.|.|.....+
T Consensus 153 ~tg~~l~~~~~~~L 166 (304)
T 3cpr_A 153 RSGIPIESDTMRRL 166 (304)
T ss_dssp HHSSCCCHHHHHHH
T ss_pred ccCcCCCHHHHHHH
Confidence 445666655444
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=90.93 E-value=1.3 Score=40.83 Aligned_cols=115 Identities=12% Similarity=-0.045 Sum_probs=64.0
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccC-------CCCcc------CCH----HHHHHHHHHHHcccCCCcEEeeCCCCC-
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGH-------DTTLP------ITL----EEMLVHCRAVARGAKRPLLVGDLPFGT- 164 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~-------~dT~~------vTl----deMi~h~~aV~Rga~~~fvVaDmPfgs- 164 (243)
..|+.+.++|+|.|=+--+ +|| |.+.. =++ .-.++.+++|+++.+.-.|...+--..
T Consensus 171 ~AA~~a~~aGfDgVEih~a-----~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~V~vrls~~~~ 245 (376)
T 1icp_A 171 VAARNAIEAGFDGVEIHGA-----HGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAH 245 (376)
T ss_dssp HHHHHHHHTTCSEEEEEEC-----TTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCC
T ss_pred HHHHHHHHcCCCEEEEcCc-----cchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCCceEEEeccccc
Confidence 3577888999999932111 233 22211 123 335677788888776314666663211
Q ss_pred ---C--cCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHH-HcCCceeeccCCcccccc
Q 026125 165 ---Y--ESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIV-EAGIAVMGHVGLTPQAIS 223 (243)
Q Consensus 165 ---Y--~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~-~~GIPV~GHiGLtPQ~~~ 223 (243)
+ +.+.+++++.|.++ ++.|+|.|.+-++... ....++.+. .-.|||++==|++|+.+.
T Consensus 246 ~~g~~~~~~~~~~~~la~~l-e~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~vr~~~~iPvi~~G~i~~~~a~ 316 (376)
T 1icp_A 246 YNEAGDTNPTALGLYMVESL-NKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAYKGTFIVAGGYDREDGN 316 (376)
T ss_dssp TTTCCCSCHHHHHHHHHHHH-GGGCCSEEEEECCSCCC------CCCCSHHHHHHCCSCEEEESSCCHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHH-HHcCCCEEEEcCCcccCCCCccccHHHHHHHHHHcCCCEEEeCCCCHHHHH
Confidence 1 22456677776554 4799999999765210 001122222 236899876666665443
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=90.91 E-value=2.6 Score=37.65 Aligned_cols=91 Identities=15% Similarity=0.171 Sum_probs=61.3
Q ss_pred HHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 105 A~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
|+-+.++|+|.+= +|+ + ++++.+..+++|+++.+ ..-+..|.. ++| +.+++++.+.+ ++
T Consensus 152 a~~~~~~Gf~~iKik~g~---------~-----~~~~~~e~v~avr~a~g~~~~l~vDan-~~~--~~~~a~~~~~~-l~ 213 (359)
T 1mdl_A 152 AVTAAELGFRAVKTRIGY---------P-----ALDQDLAVVRSIRQAVGDDFGIMVDYN-QSL--DVPAAIKRSQA-LQ 213 (359)
T ss_dssp HHHHHHTTCSEEEEECCC---------S-----SHHHHHHHHHHHHHHHCSSSEEEEECT-TCS--CHHHHHHHHHH-HH
T ss_pred HHHHHHcCCCEEEEecCC---------C-----CHHHHHHHHHHHHHHhCCCCEEEEECC-CCC--CHHHHHHHHHH-HH
Confidence 4445578999984 443 1 35777889999999873 455678985 577 68999998766 45
Q ss_pred HhCCCEEEeCCCCC-chHHHHHHHHH-cCCceeecc
Q 026125 182 EGGMDAIKLEGGSP-SRITAARGIVE-AGIAVMGHV 215 (243)
Q Consensus 182 eaGAdaVKLEGg~~-~~~~~i~~L~~-~GIPV~GHi 215 (243)
+.|.+. +|.... ....-.+.|.+ .+|||++-=
T Consensus 214 ~~~i~~--iE~P~~~~~~~~~~~l~~~~~iPI~~de 247 (359)
T 1mdl_A 214 QEGVTW--IEEPTLQHDYEGHQRIQSKLNVPVQMGE 247 (359)
T ss_dssp HHTCSC--EECCSCTTCHHHHHHHHHTCSSCEEECT
T ss_pred HhCCCe--EECCCChhhHHHHHHHHHhCCCCEEeCC
Confidence 688875 476532 11223455665 379999753
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=90.88 E-value=0.89 Score=39.92 Aligned_cols=125 Identities=13% Similarity=0.102 Sum_probs=72.3
Q ss_pred Cc-EEEEecCCH----HHHHHHHHcCCC---EEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC
Q 026125 92 EP-ITMVTAYDY----PSAVHLDSAGID---ICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG 163 (243)
Q Consensus 92 ~~-ItmlTAYD~----~sA~iae~AGiD---iILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg 163 (243)
.| ++-+..++. ..|+.++++|+| +|-+.-+--.. -|- +...-+.|......++|++.++.|+++ -+..
T Consensus 94 ~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~-~g~-~~~g~~~~~~~~ii~~vr~~~~~Pv~v-K~~~- 169 (314)
T 2e6f_A 94 KPLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNV-PGK-PQVAYDFEAMRTYLQQVSLAYGLPFGV-KMPP- 169 (314)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCS-TTC-CCGGGSHHHHHHHHHHHHHHHCSCEEE-EECC-
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCC-CCc-hhhcCCHHHHHHHHHHHHHhcCCCEEE-EECC-
Confidence 44 334555553 346667788999 77554322122 221 222336677777788888887777544 3322
Q ss_pred CCcCCHHHHHHHHHHHHHHhC-CCEEEeCCCC---------------------------C---chHHHHHHHHHc--CCc
Q 026125 164 TYESSTNQAVDTAVRILKEGG-MDAIKLEGGS---------------------------P---SRITAARGIVEA--GIA 210 (243)
Q Consensus 164 sY~~s~e~Av~nA~Rl~keaG-AdaVKLEGg~---------------------------~---~~~~~i~~L~~~--GIP 210 (243)
. .+.++..+.|.++. ++| +|+|.+.+.. . .....++.+.+. .||
T Consensus 170 ~--~~~~~~~~~a~~~~-~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~~~ip 246 (314)
T 2e6f_A 170 Y--FDIAHFDTAAAVLN-EFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDKL 246 (314)
T ss_dssp C--CCHHHHHHHHHHHH-TCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHCTTSE
T ss_pred C--CCHHHHHHHHHHHH-hcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhcCCCC
Confidence 1 25677666565554 799 9999765532 0 012445666554 799
Q ss_pred eeeccCCc-ccccc
Q 026125 211 VMGHVGLT-PQAIS 223 (243)
Q Consensus 211 V~GHiGLt-PQ~~~ 223 (243)
|+|==|+. |+.+.
T Consensus 247 vi~~GGI~~~~da~ 260 (314)
T 2e6f_A 247 VFGCGGVYSGEDAF 260 (314)
T ss_dssp EEEESSCCSHHHHH
T ss_pred EEEECCCCCHHHHH
Confidence 98876663 55443
|
| >3cjp_A Predicted amidohydrolase, dihydroorotase family; structural genomics, protein structure initiative; 1.85A {Clostridium acetobutylicum atcc 824} | Back alignment and structure |
|---|
Probab=90.78 E-value=2.7 Score=35.33 Aligned_cols=68 Identities=12% Similarity=0.019 Sum_probs=43.6
Q ss_pred HHcccCCCcEE-eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC----CCchHHHHHHHHHc-CCceeeccCC
Q 026125 147 VARGAKRPLLV-GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG----SPSRITAARGIVEA-GIAVMGHVGL 217 (243)
Q Consensus 147 V~Rga~~~fvV-aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg----~~~~~~~i~~L~~~-GIPV~GHiGL 217 (243)
.++..|.-|+. +=.|. ....+++++...+++++.|+.+|+.-|- .+....+++.+.+. |+||+=|.|-
T Consensus 80 ~~~~~p~~~~~~g~~p~---~~~~~~~~~el~~~~~~~g~~gi~~~g~~~~~~~~~~~~~~~a~~~~~lpv~iH~~~ 153 (272)
T 3cjp_A 80 VIQAYPSRYVGFGNVPV---GLSENDTNSYIEENIVNNKLVGIGELTPASGQIKSLKPIFKYSMDSGSLPIWIHAFN 153 (272)
T ss_dssp HHHHSTTTEEEEECCCT---TCCHHHHHHHHHHHTTTTTCSEEEEECCCTTCGGGGHHHHHHHHHTTCCCEEECCST
T ss_pred HHHhCCCeEEEEEEeCC---CCCcHHHHHHHHHHHHhcCceEEEecCCCCCccHHHHHHHHHHHhccCCcEEEeCCC
Confidence 33445554443 44454 1233566666666666679999986332 23456678888898 9999999984
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=90.73 E-value=2.3 Score=40.38 Aligned_cols=89 Identities=16% Similarity=0.078 Sum_probs=54.9
Q ss_pred CcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCC-ccCCHHHHHHHHHHHHccc------CCCcEEeeCCCCC
Q 026125 92 EPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGA------KRPLLVGDLPFGT 164 (243)
Q Consensus 92 ~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT-~~vTldeMi~h~~aV~Rga------~~~fvVaDmPfgs 164 (243)
-++.+=+..++..|+.+.++|+|++.||-.-|....+..-+ ..++--+.+..+...++.. +.| |++|= +
T Consensus 285 ~~Vi~G~V~t~~~a~~l~~aGad~I~Vg~~~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ip-via~G---G 360 (503)
T 1me8_A 285 VKVGAGNIVDGEGFRYLADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIP-VCSDG---G 360 (503)
T ss_dssp SCEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECC-EEEES---C
T ss_pred ceEeeccccCHHHHHHHHHhCCCeEEecccCCcCcccccccCCCCchHHHHHHHHHHHHHHhhhcCCCce-EEEeC---C
Confidence 57777789999999999999999998875554422111100 1122223333333333322 344 78885 4
Q ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 165 YESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 165 Y~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
. .++.++ .+.+ +.||++|.+
T Consensus 361 i-~~~~di----~kAl-alGA~~V~i 380 (503)
T 1me8_A 361 I-VYDYHM----TLAL-AMGADFIML 380 (503)
T ss_dssp C-CSHHHH----HHHH-HTTCSEEEE
T ss_pred C-CCHHHH----HHHH-HcCCCEEEE
Confidence 4 367777 4566 589999998
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=90.70 E-value=1.1 Score=37.16 Aligned_cols=95 Identities=12% Similarity=0.127 Sum_probs=57.1
Q ss_pred CCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEe
Q 026125 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (243)
Q Consensus 79 ~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVa 158 (243)
.++..+++.+. ..++.+++.+...+..+.++|+|.|++|-..+.. ..+...+.++ ...+.+++..+.| +++
T Consensus 99 ~~~~~~~~~~~--~~~ig~sv~t~~~~~~a~~~gaD~i~~~~~f~~~--~~~g~~~~~~----~~l~~~~~~~~~p-via 169 (221)
T 1yad_A 99 FSPKQIRARFP--HLHIGRSVHSLEEAVQAEKEDADYVLFGHVFETD--CKKGLEGRGV----SLLSDIKQRISIP-VIA 169 (221)
T ss_dssp CCHHHHHHHCT--TCEEEEEECSHHHHHHHHHTTCSEEEEECCC------------CHH----HHHHHHHHHCCSC-EEE
T ss_pred cCHHHHHHHCC--CCEEEEEcCCHHHHHHHHhCCCCEEEECCccccC--CCCCCCCCCH----HHHHHHHHhCCCC-EEE
Confidence 35677777653 4667789999999999999999999987421110 0111112333 3345565555556 455
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEG 192 (243)
+ |+- |++++ .+++ ++||++|-+-.
T Consensus 170 ~---GGI--~~~nv----~~~~-~~Ga~gv~vgs 193 (221)
T 1yad_A 170 I---GGM--TPDRL----RDVK-QAGADGIAVMS 193 (221)
T ss_dssp E---SSC--CGGGH----HHHH-HTTCSEEEESH
T ss_pred E---CCC--CHHHH----HHHH-HcCCCEEEEhH
Confidence 5 233 44443 5566 48999998743
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=90.67 E-value=2.3 Score=34.98 Aligned_cols=89 Identities=20% Similarity=0.210 Sum_probs=53.1
Q ss_pred HHHHHHHHcCCCEEEeCcch-hhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSA-AMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSl-gmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
..++.++++|+|.|++.+-- .....| ..++ ..+.+++..+.| ++++ |+- .+.+++ .+++
T Consensus 158 e~~~~~~~~G~d~i~~~~~~~~g~~~~------~~~~----~i~~l~~~~~~p-via~---GGi-~~~~~~----~~~~- 217 (253)
T 1h5y_A 158 KWAKEVEELGAGEILLTSIDRDGTGLG------YDVE----LIRRVADSVRIP-VIAS---GGA-GRVEHF----YEAA- 217 (253)
T ss_dssp HHHHHHHHHTCSEEEEEETTTTTTCSC------CCHH----HHHHHHHHCSSC-EEEE---SCC-CSHHHH----HHHH-
T ss_pred HHHHHHHhCCCCEEEEecccCCCCcCc------CCHH----HHHHHHHhcCCC-EEEe---CCC-CCHHHH----HHHH-
Confidence 34778889999999875311 111112 2333 234555555566 5666 344 245665 5566
Q ss_pred HhCCCEEEeCC----CCCchHHHHHHHHHcCCce
Q 026125 182 EGGMDAIKLEG----GSPSRITAARGIVEAGIAV 211 (243)
Q Consensus 182 eaGAdaVKLEG----g~~~~~~~i~~L~~~GIPV 211 (243)
++||++|-+=. +......+++.|.+.|++|
T Consensus 218 ~~Ga~~v~vgsal~~~~~~~~~~~~~l~~~g~~~ 251 (253)
T 1h5y_A 218 AAGADAVLAASLFHFRVLSIAQVKRYLKERGVEV 251 (253)
T ss_dssp HTTCSEEEESHHHHTTSSCHHHHHHHHHHTTCBC
T ss_pred HcCCcHHHHHHHHHcCCCCHHHHHHHHHHcCCCC
Confidence 58999997632 1222456678899999987
|
| >4inf_A Metal-dependent hydrolase; amidohydrolase, metal binding site, enzyme functi initiative, EFI; 1.48A {Novosphingobium aromaticivorans} PDB: 4ing_A* | Back alignment and structure |
|---|
Probab=90.64 E-value=1 Score=41.23 Aligned_cols=115 Identities=16% Similarity=0.179 Sum_probs=68.3
Q ss_pred EecCCHHH--HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHH-------HHHHHcccCCCcEE-eeCCCCCCc
Q 026125 97 VTAYDYPS--AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVH-------CRAVARGAKRPLLV-GDLPFGTYE 166 (243)
Q Consensus 97 lTAYD~~s--A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h-------~~aV~Rga~~~fvV-aDmPfgsY~ 166 (243)
..+||... -...|++|||.-++--+. .|.... ...+.-... ....++..|.-|+- +-+|.
T Consensus 86 ~~~~D~~~~rl~~MD~~GId~~Vl~~~~----pg~~~~--~d~~~a~~~~r~~Nd~l~~~~~~~P~Rf~g~a~v~~---- 155 (373)
T 4inf_A 86 ERLLDLGERRIADMDATGIDKAILALTS----PGVQPL--HDLDEARTLATRANDTLADACQKYPDRFIGMGTVAP---- 155 (373)
T ss_dssp HHHHCCSHHHHHHHHHTTCCEEEEEECT----TTTTTC--SCHHHHHHHHHHHHHHHHHHHHHSTTTEEECBCCCT----
T ss_pred ccccCchHHHHHHHHHCCCcEEEEccCC----cccccc--CCHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEecCC----
Confidence 45778643 445789999955432111 122110 111211111 12233445555543 33333
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCC-------CCchHHHHHHHHHcCCceeeccCCcccc
Q 026125 167 SSTNQAVDTAVRILKEGGMDAIKLEGG-------SPSRITAARGIVEAGIAVMGHVGLTPQA 221 (243)
Q Consensus 167 ~s~e~Av~nA~Rl~keaGAdaVKLEGg-------~~~~~~~i~~L~~~GIPV~GHiGLtPQ~ 221 (243)
.+++.+++-..|.+++.|+.+||+... .+....+.+++.+.|+||+=|.|-.|..
T Consensus 156 ~~~~~a~~EL~r~~~~~G~~Gv~l~~~~~g~~l~d~~~~pi~~~~~e~g~pV~iH~g~~~~~ 217 (373)
T 4inf_A 156 QDPEWSAREIHRGARELGFKGIQINSHTQGRYLDEEFFDPIFRALVEVDQPLYIHPATSPDS 217 (373)
T ss_dssp TSHHHHHHHHHHHHHTSCCCCEEECSCBTTBCTTSGGGHHHHHHHHHHTCCEEECCCCCCTT
T ss_pred CCHHHHHHHHHHHHhhcCceEEEECCCCCCCCCCCcchHHHHHHHHHcCCeEEECCCCCCcc
Confidence 146778888888887669999999742 2345677899999999999999987654
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=90.48 E-value=1.8 Score=38.60 Aligned_cols=98 Identities=13% Similarity=0.045 Sum_probs=58.0
Q ss_pred HHHHHHhhhCCCcEEEEec---CCHHHHHHHHHcCCCEEEeCcchhhh-------hc------cC-CCCccCCHHHHHHH
Q 026125 81 LTHLRQKHKNGEPITMVTA---YDYPSAVHLDSAGIDICLVGDSAAMV-------VH------GH-DTTLPITLEEMLVH 143 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTA---YD~~sA~iae~AGiDiILVGDSlgmv-------~l------G~-~dT~~vTldeMi~h 143 (243)
+..+++.++-+.|+.+=.. ++...|+.++++|+|.|.|...-+.. .. +| .+..+-++ +++
T Consensus 171 ~~~i~~vr~~~~Pv~vK~v~~g~~~e~a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~-~~l-- 247 (332)
T 1vcf_A 171 VERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTA-RAI-- 247 (332)
T ss_dssp HHHHHHHCSCSSCEEEECSSSCCCHHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHH-HHH--
T ss_pred HHHHHHHHcCCCCEEEEecCCCCCHHHHHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHH-HHH--
Confidence 4556555443567665435 78889999999999999774332210 00 01 22233333 334
Q ss_pred HHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 144 CRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 144 ~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
..|++..+...|++|= +. .+.+++ .+.+. .|||+|.+-
T Consensus 248 -~~v~~~~~~ipvia~G---GI-~~~~d~----~kal~-~GAd~V~ig 285 (332)
T 1vcf_A 248 -LEVREVLPHLPLVASG---GV-YTGTDG----AKALA-LGADLLAVA 285 (332)
T ss_dssp -HHHHHHCSSSCEEEES---SC-CSHHHH----HHHHH-HTCSEEEEC
T ss_pred -HHHHHhcCCCeEEEEC---CC-CCHHHH----HHHHH-hCCChHhhh
Confidence 3444555334477774 44 477888 45664 699999983
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=90.44 E-value=6.7 Score=33.71 Aligned_cols=79 Identities=20% Similarity=0.154 Sum_probs=50.6
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ke 182 (243)
.+++.|-+.|.|-|-+-=.+|...-| ..++++...++|++.++...+=+=++. +| .++++ +..|.|+..|
T Consensus 75 ~e~~~Ai~~GAdevd~vinig~~~~g-------~~~~v~~ei~~v~~a~~~~~lkvIlet-~~-l~~e~-i~~a~~ia~e 144 (220)
T 1ub3_A 75 LEAALACARGADEVDMVLHLGRAKAG-------DLDYLEAEVRAVREAVPQAVLKVILET-GY-FSPEE-IARLAEAAIR 144 (220)
T ss_dssp HHHHHHHHTTCSEEEEECCHHHHHTT-------CHHHHHHHHHHHHHHSTTSEEEEECCG-GG-SCHHH-HHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEecccchhhhCC-------CHHHHHHHHHHHHHHHcCCCceEEEec-CC-CCHHH-HHHHHHHHHH
Confidence 44566667899877322122222112 457788888889888865432223333 44 36555 6777888889
Q ss_pred hCCCEEEeC
Q 026125 183 GGMDAIKLE 191 (243)
Q Consensus 183 aGAdaVKLE 191 (243)
+|||-||..
T Consensus 145 aGADfVKTs 153 (220)
T 1ub3_A 145 GGADFLKTS 153 (220)
T ss_dssp HTCSEEECC
T ss_pred hCCCEEEeC
Confidence 999999998
|
| >2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.42 E-value=0.45 Score=42.04 Aligned_cols=76 Identities=17% Similarity=0.128 Sum_probs=54.7
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccC-CHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPI-TLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~v-TldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~k 181 (243)
.|+.++++|+|.+++-=. .-... |-++++.|.++|++ +.|+++=|.|- -++..+++.. .|+.+
T Consensus 80 la~~A~~~Gadavlv~~P---------~y~~~~~~~~l~~~f~~va~--~lPiilYn~P~~tg~~l~~~~~----~~La~ 144 (283)
T 2pcq_A 80 ALLEAKAAGAMALLATPP---------RYYHGSLGAGLLRYYEALAE--KMPLFLYHVPQNTKVDLPLEAV----EALAP 144 (283)
T ss_dssp HHHHHHHHTCSEEEECCC---------CTTGGGTTTHHHHHHHHHHH--HSCEEEEECHHHHCCCCCHHHH----HHHTT
T ss_pred HHHHHHhcCCCEEEecCC---------cCCCCCCHHHHHHHHHHHhc--CCCEEEEeCccccCcCCCHHHH----HHHhc
Confidence 467789999999986522 11223 56899999999999 89988899985 2344566665 45554
Q ss_pred HhCCCEEEeCCCC
Q 026125 182 EGGMDAIKLEGGS 194 (243)
Q Consensus 182 eaGAdaVKLEGg~ 194 (243)
.-...+||-..|.
T Consensus 145 ~pnivgiKdssgd 157 (283)
T 2pcq_A 145 HPNVLGIKDSSGD 157 (283)
T ss_dssp STTEEEEEECSCC
T ss_pred CCCEEEEEECCCC
Confidence 4568899998875
|
| >2gwg_A 4-oxalomesaconate hydratase; TIM-barrel like protein, structural genomics, PSI, protein S initiative; 1.80A {Rhodopseudomonas palustris} SCOP: c.1.9.15 | Back alignment and structure |
|---|
Probab=90.40 E-value=1.3 Score=39.13 Aligned_cols=111 Identities=19% Similarity=0.147 Sum_probs=60.9
Q ss_pred HHHHHcCCCEE-EeCcchhhhhccCCCCcc-CCH-HHHHHHHHHHHcccCCCcEE-eeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 106 VHLDSAGIDIC-LVGDSAAMVVHGHDTTLP-ITL-EEMLVHCRAVARGAKRPLLV-GDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 106 ~iae~AGiDiI-LVGDSlgmv~lG~~dT~~-vTl-deMi~h~~aV~Rga~~~fvV-aDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
..++++|||.. +++-..+. .+++.|... ..+ ...-..+..+++.-|.-|+. +-+|.... .+++++++...|+++
T Consensus 56 ~~md~~GV~~~vl~~~~~~~-~~~~~~~~~~~~~~~~~N~~~~~~~~~~p~rf~~~~~~p~~~~-~~~~~a~~eL~r~~~ 133 (350)
T 2gwg_A 56 KKMQERGSDLTVFSPRASFM-AHHIGDFNVSSTWAAICNELCYRVSQLFPDNFIGAAMLPQSPG-VDPKTCIPELEKCVK 133 (350)
T ss_dssp HHHHHHTCCEEEEECCC--------CCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECCCCTT-SCGGGGHHHHHHHHH
T ss_pred HHHHHcCCeEEEEcCCchhh-ccccCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCC-CCHHHHHHHHHHHHh
Confidence 44778999965 55533211 112212100 000 01112233444455555543 66665221 245667777778887
Q ss_pred HhCCCEEEeCC------------CCCchHHHHHHHHHcCCceeeccCCc
Q 026125 182 EGGMDAIKLEG------------GSPSRITAARGIVEAGIAVMGHVGLT 218 (243)
Q Consensus 182 eaGAdaVKLEG------------g~~~~~~~i~~L~~~GIPV~GHiGLt 218 (243)
+.|+.+|+|-- +.+....+.+.+.+.|+||+=|.|-.
T Consensus 134 ~~g~~Gv~l~~~~~~~~~~~~~l~d~~~~p~~~~a~e~~lpv~iH~~~~ 182 (350)
T 2gwg_A 134 EYGFVAINLNPDPSGGHWTSPPLTDRIWYPIYEKMVELEIPAMIHVSTS 182 (350)
T ss_dssp TSCCCEEEECSCTTSSCCCSCCTTSGGGHHHHHHHHHHTCCEEECCCC-
T ss_pred ccCCeEEEECCCCCCccCCCCCCCCHHHHHHHHHHHHcCCeEEECCCCC
Confidence 78999999931 12234567899999999999999854
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=90.34 E-value=1.8 Score=40.01 Aligned_cols=94 Identities=10% Similarity=0.008 Sum_probs=59.3
Q ss_pred CCCcEEEEecCCHH--HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcC
Q 026125 90 NGEPITMVTAYDYP--SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYES 167 (243)
Q Consensus 90 ~g~~ItmlTAYD~~--sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~ 167 (243)
++-.+.-++++... .++++|++|.|.+-+-=.... -+..| .+..+++..+...+.|++..+.|+++-..+|+ .
T Consensus 144 ~~~~ianig~~~~~e~~~~~ve~~~adal~ihln~~q-e~~~p-~Gd~~~~~~~~~I~~l~~~~~~PVivK~vg~g---~ 218 (365)
T 3sr7_A 144 HLLLATNIGLDKPYQAGLQAVRDLQPLFLQVHINLMQ-ELLMP-EGEREFRSWKKHLSDYAKKLQLPFILKEVGFG---M 218 (365)
T ss_dssp -CCEEEEEETTSCHHHHHHHHHHHCCSCEEEEECHHH-HHTSS-SSCCCCHHHHHHHHHHHHHCCSCEEEEECSSC---C
T ss_pred CCcEEEEeCCCCCHHHHHHHHHhcCCCEEEEeccccc-cccCC-CCCCcHHHHHHHHHHHHHhhCCCEEEEECCCC---C
Confidence 44455667776544 378889999998854322211 11122 12334555566777888888899777666663 4
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 168 STNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 168 s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
++++| .++. ++|||+|.+.|.
T Consensus 219 s~e~A----~~l~-~aGad~I~V~g~ 239 (365)
T 3sr7_A 219 DVKTI----QTAI-DLGVKTVDISGR 239 (365)
T ss_dssp CHHHH----HHHH-HHTCCEEECCCB
T ss_pred CHHHH----HHHH-HcCCCEEEEeCC
Confidence 67766 4555 699999999654
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=90.31 E-value=5.1 Score=35.46 Aligned_cols=90 Identities=21% Similarity=0.291 Sum_probs=55.7
Q ss_pred HHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEe-CcchhhhhccCCCCc-cCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 82 THLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTL-PITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 82 ~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILV-GDSlgmv~lG~~dT~-~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
..++..++.+.++ ++.+.+...|+.++++|+|.|++ |-.. -|+..+. ..++ ...+.|++..+.| |+++
T Consensus 109 ~~~~~l~~~gi~v-i~~v~t~~~a~~~~~~GaD~i~v~g~~~----GG~~G~~~~~~~----~~l~~v~~~~~iP-viaa 178 (328)
T 2gjl_A 109 EHIAEFRRHGVKV-IHKCTAVRHALKAERLGVDAVSIDGFEC----AGHPGEDDIPGL----VLLPAAANRLRVP-IIAS 178 (328)
T ss_dssp HHHHHHHHTTCEE-EEEESSHHHHHHHHHTTCSEEEEECTTC----SBCCCSSCCCHH----HHHHHHHTTCCSC-EEEE
T ss_pred HHHHHHHHcCCCE-EeeCCCHHHHHHHHHcCCCEEEEECCCC----CcCCCCccccHH----HHHHHHHHhcCCC-EEEE
Confidence 3345555555554 47788899999999999999977 4222 1332221 2222 3446677777666 5666
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
= +. .+++++ .+++. .|||+|-+
T Consensus 179 G---GI-~~~~~v----~~al~-~GAdgV~v 200 (328)
T 2gjl_A 179 G---GF-ADGRGL----VAALA-LGADAINM 200 (328)
T ss_dssp S---SC-CSHHHH----HHHHH-HTCSEEEE
T ss_pred C---CC-CCHHHH----HHHHH-cCCCEEEE
Confidence 3 33 256665 45553 69999987
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=90.06 E-value=1.8 Score=37.72 Aligned_cols=96 Identities=14% Similarity=0.082 Sum_probs=59.0
Q ss_pred CCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcc--cCCCcE
Q 026125 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARG--AKRPLL 156 (243)
Q Consensus 79 ~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rg--a~~~fv 156 (243)
..+.++|+.. +...+..++|++...+..+++.|+|.|.+|--... -..++..+++++.+ +.+++. .+.| +
T Consensus 123 l~~~~~r~~~-~~~~~iG~S~ht~~Ea~~A~~~GaDyI~vgpvf~T--~tK~~~~~~gl~~l----~~~~~~~~~~iP-v 194 (243)
T 3o63_A 123 LPVNVARQIL-APDTLIGRSTHDPDQVAAAAAGDADYFCVGPCWPT--PTKPGRAAPGLGLV----RVAAELGGDDKP-W 194 (243)
T ss_dssp SCHHHHHHHS-CTTCEEEEEECSHHHHHHHHHSSCSEEEECCSSCC--CC-----CCCHHHH----HHHHTC---CCC-E
T ss_pred CCHHHHHHhh-CCCCEEEEeCCCHHHHHHHhhCCCCEEEEcCccCC--CCCCCcchhhHHHH----HHHHHhccCCCC-E
Confidence 4567777764 55688999999999999999999999999832111 12223335666543 445544 3555 5
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEG 192 (243)
++.= +- +++++ .+++ ++||++|-+-+
T Consensus 195 vAiG---GI--~~~ni----~~~~-~aGa~gvav~s 220 (243)
T 3o63_A 195 FAIG---GI--NAQRL----PAVL-DAGARRIVVVR 220 (243)
T ss_dssp EEES---SC--CTTTH----HHHH-HTTCCCEEESH
T ss_pred EEec---CC--CHHHH----HHHH-HcCCCEEEEeH
Confidence 5542 22 33333 4455 68999998743
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=89.90 E-value=3.1 Score=37.20 Aligned_cols=90 Identities=14% Similarity=0.204 Sum_probs=47.4
Q ss_pred CCcEE-EEe-cCCHH-HHHHHHHcCCCEE-EeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCc
Q 026125 91 GEPIT-MVT-AYDYP-SAVHLDSAGIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYE 166 (243)
Q Consensus 91 g~~It-mlT-AYD~~-sA~iae~AGiDiI-LVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~ 166 (243)
+.|+. -+. -||.. .+++++++|+|+| +-.+...-.....-+ -.++..+...++|++..+.|+++-..+|+
T Consensus 116 ~~pv~~~i~~~~~~~~~~~~~~~~gad~i~i~~~~~~~~~~~~~~---~~~~~~~~~i~~vr~~~~~Pv~vK~~~~~--- 189 (349)
T 1p0k_A 116 NGLIFANLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGD---RSFSGALKRIEQICSRVSVPVIVKEVGFG--- 189 (349)
T ss_dssp SSCEEEEEETTCCHHHHHHHHHHTTCSEEEEEECTTTTC-----------CTTHHHHHHHHHHHCSSCEEEEEESSC---
T ss_pred CceeEEeecCCCCHHHHHHHHHhcCCCeEEecccchhhhcCCCCC---cchHHHHHHHHHHHHHcCCCEEEEecCCC---
Confidence 34433 334 36653 4567889999988 322222111110001 11112345556777777888666433552
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 167 SSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 167 ~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
.+++++ .++. ++|||+|-+-
T Consensus 190 ~~~~~a----~~a~-~~Gad~I~v~ 209 (349)
T 1p0k_A 190 MSKASA----GKLY-EAGAAAVDIG 209 (349)
T ss_dssp CCHHHH----HHHH-HHTCSEEEEE
T ss_pred CCHHHH----HHHH-HcCCCEEEEc
Confidence 356665 4444 6899999983
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=89.85 E-value=1.6 Score=38.77 Aligned_cols=117 Identities=13% Similarity=0.059 Sum_probs=73.1
Q ss_pred CCCHHHHHHhhhCCCcEEEEecCCHHH--HHHHHHcCCCEEEeC-cchhhhhccCCCCccCCHHHHHHHHHHHHcccCCC
Q 026125 78 RVTLTHLRQKHKNGEPITMVTAYDYPS--AVHLDSAGIDICLVG-DSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRP 154 (243)
Q Consensus 78 ~~tv~~Lr~~kk~g~~ItmlTAYD~~s--A~iae~AGiDiILVG-DSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~ 154 (243)
++|...|.+--+.+ -+|..- |+-..+.|.|+|=|| .| +..-.++.|..-.++|++..+.|
T Consensus 18 N~Tpdsf~dg~~~~-------~~~~a~~~a~~~v~~GAdiIDIg~~s----------~~~eE~~rv~~vi~~l~~~~~~p 80 (271)
T 2yci_X 18 NGMFKDIREAILNK-------DPRPIQEWARRQAEKGAHYLDVNTGP----------TADDPVRVMEWLVKTIQEVVDLP 80 (271)
T ss_dssp ETTSHHHHHHHHTT-------CCHHHHHHHHHHHHTTCSEEEEECCS----------CSSCHHHHHHHHHHHHHHHCCCC
T ss_pred CCChhhHHHhhhhC-------CHHHHHHHHHHHHHCCCCEEEEcCCc----------CchhHHHHHHHHHHHHHHhCCCe
Confidence 46666777655442 234433 344557899999665 24 33346888888889998776655
Q ss_pred cEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEE-eCCCCCchHHHHHHHHHcCCceee-cc--CCcccc
Q 026125 155 LLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIK-LEGGSPSRITAARGIVEAGIAVMG-HV--GLTPQA 221 (243)
Q Consensus 155 fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVK-LEGg~~~~~~~i~~L~~~GIPV~G-Hi--GLtPQ~ 221 (243)
|..| || + .++++.|.+.+ .|++.|+ +.++.+..+.+.+...+.|.||+. |. .=+|++
T Consensus 81 -isID----T~--~-~~v~~aal~a~--~Ga~iINdvs~~~d~~~~~~~~~a~~~~~vv~m~~d~~G~p~t 141 (271)
T 2yci_X 81 -CCLD----ST--N-PDAIEAGLKVH--RGHAMINSTSADQWKMDIFFPMAKKYEAAIIGLTMNEKGVPKD 141 (271)
T ss_dssp -EEEE----CS--C-HHHHHHHHHHC--CSCCEEEEECSCHHHHHHHHHHHHHHTCEEEEESCBTTBCCCS
T ss_pred -EEEe----CC--C-HHHHHHHHHhC--CCCCEEEECCCCccccHHHHHHHHHcCCCEEEEecCCCCCCCC
Confidence 6778 45 2 34444444433 1999999 777642224556667788999886 65 225554
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=89.82 E-value=2 Score=39.31 Aligned_cols=128 Identities=14% Similarity=0.160 Sum_probs=71.1
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCH-HHHHHHHHcCCCEEEeCcchhhhhccC-------CCCc------cCCHH----
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDY-PSAVHLDSAGIDICLVGDSAAMVVHGH-------DTTL------PITLE---- 138 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~-~sA~iae~AGiDiILVGDSlgmv~lG~-------~dT~------~vTld---- 138 (243)
+.+|..++....+ |+ ..|+.+.++|+|.|=+--+ +|| |.+. .-+++
T Consensus 149 ~~mt~~eI~~~i~-----------~f~~aA~~a~~aGfDgVeih~a-----~GyLl~qFlsp~~N~R~D~yGGslenr~r 212 (364)
T 1vyr_A 149 RALELDEIPGIVN-----------DFRQAVANAREAGFDLVELHSA-----HGYLLHQFLSPSSNQRTDQYGGSVENRAR 212 (364)
T ss_dssp EECCGGGHHHHHH-----------HHHHHHHHHHHTTCSEEEEEEC-----TTSHHHHHHCTTTCCCCSTTSSSHHHHTH
T ss_pred CcCCHHHHHHHHH-----------HHHHHHHHHHHcCCCEEEEcCc-----cchHHHhccCCcccccCCcCCcchhcChh
Confidence 3456666665432 22 3567788999999943111 222 2211 11232
Q ss_pred HHHHHHHHHHcccC-CCcEEe-----eCCCCC---CcCCHHHHHHHHHHHHHHhCCCEEEeCCCC-----CchHHHHHHH
Q 026125 139 EMLVHCRAVARGAK-RPLLVG-----DLPFGT---YESSTNQAVDTAVRILKEGGMDAIKLEGGS-----PSRITAARGI 204 (243)
Q Consensus 139 eMi~h~~aV~Rga~-~~fvVa-----DmPfgs---Y~~s~e~Av~nA~Rl~keaGAdaVKLEGg~-----~~~~~~i~~L 204 (243)
-.++.+++|++..+ .+ |.. |. |.+ -..+.+++++.|.++- +.|+|.|.+-++. ......++.+
T Consensus 213 ~~~eiv~avr~~vg~~~-v~vrls~~~~-~~~~~~~~~~~~~~~~~a~~l~-~~G~d~i~v~~~~~~~~~~~~~~~~~~v 289 (364)
T 1vyr_A 213 LVLEVVDAVCNEWSADR-IGIRVSPIGT-FQNVDNGPNEEADALYLIEELA-KRGIAYLHMSETDLAGGKPYSEAFRQKV 289 (364)
T ss_dssp HHHHHHHHHHHHSCGGG-EEEEECCSSC-BTTBCCCTTHHHHHHHHHHHHH-HTTCSEEEEECCBTTBCCCCCHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCc-EEEEEccccc-cccccCCCCCHHHHHHHHHHHH-HhCCCEEEEecCcccCCCcccHHHHHHH
Confidence 24566788888775 34 444 21 211 1225677877776655 6899999997752 1112334444
Q ss_pred HH-cCCceeeccCCcccccc
Q 026125 205 VE-AGIAVMGHVGLTPQAIS 223 (243)
Q Consensus 205 ~~-~GIPV~GHiGLtPQ~~~ 223 (243)
.+ -.|||++==|++|+.+.
T Consensus 290 ~~~~~iPvi~~Ggit~~~a~ 309 (364)
T 1vyr_A 290 RERFHGVIIGAGAYTAEKAE 309 (364)
T ss_dssp HHHCCSEEEEESSCCHHHHH
T ss_pred HHHCCCCEEEECCcCHHHHH
Confidence 43 37899887666665443
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=89.80 E-value=1.4 Score=40.50 Aligned_cols=66 Identities=20% Similarity=0.391 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 102 ~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
...+..+.++|+|+|.+.-+ +|++ +..+...+.+++.. +.|+++.+ - .+++++ .++.
T Consensus 155 ~~~a~~~~~~G~d~i~i~~~-----~g~~-------~~~~e~i~~ir~~~~~~pviv~~-----v-~~~~~a----~~a~ 212 (404)
T 1eep_A 155 IERVEELVKAHVDILVIDSA-----HGHS-------TRIIELIKKIKTKYPNLDLIAGN-----I-VTKEAA----LDLI 212 (404)
T ss_dssp HHHHHHHHHTTCSEEEECCS-----CCSS-------HHHHHHHHHHHHHCTTCEEEEEE-----E-CSHHHH----HHHH
T ss_pred HHHHHHHHHCCCCEEEEeCC-----CCCh-------HHHHHHHHHHHHHCCCCeEEEcC-----C-CcHHHH----HHHH
Confidence 44566677899999976211 2432 44555667777776 45644422 2 356665 4444
Q ss_pred HHhCCCEEEe
Q 026125 181 KEGGMDAIKL 190 (243)
Q Consensus 181 keaGAdaVKL 190 (243)
++|||+|.+
T Consensus 213 -~~Gad~I~v 221 (404)
T 1eep_A 213 -SVGADCLKV 221 (404)
T ss_dssp -TTTCSEEEE
T ss_pred -hcCCCEEEE
Confidence 699999999
|
| >3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TI protein; HET: GOL; 1.76A {Bordetella bronchiseptica} PDB: 3k4w_A | Back alignment and structure |
|---|
Probab=89.75 E-value=4.5 Score=34.97 Aligned_cols=96 Identities=18% Similarity=0.239 Sum_probs=60.4
Q ss_pred HHHHcCCCEE-EeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE-EeeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 026125 107 HLDSAGIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL-VGDLPFGTYESSTNQAVDTAVRILKEGG 184 (243)
Q Consensus 107 iae~AGiDiI-LVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv-VaDmPfgsY~~s~e~Av~nA~Rl~keaG 184 (243)
.++++|||.. ++|-+. ++......+.++.. ++.-|.-|+ ++-++- .+++++++-..+ +++.|
T Consensus 55 ~md~~GV~~~V~~~~~~-------~~~~~~~N~~~~~~----~~~~p~r~~~~~~v~p----~~~~~a~~eL~~-~~~~g 118 (291)
T 3irs_A 55 EMAAAGIEQGVCVGRNS-------SVLGSVSNADVAAV----AKAYPDKFHPVGSIEA----ATRKEAMAQMQE-ILDLG 118 (291)
T ss_dssp HHHHTTCCEEEEECCEE-------TTTEECCHHHHHHH----HHHSTTTEEEEEECCC----SSHHHHHHHHHH-HHHTT
T ss_pred HHHHCCCCEEEEcCCCc-------cccccccHHHHHHH----HHHCCCcEEEEEecCc----cCHHHHHHHHHH-HHhCC
Confidence 4678999944 566432 11223456665543 333443332 244443 134667777677 77889
Q ss_pred CCEEEeC-C----C----CCchHHHHHHHHHcCCceeeccCCc
Q 026125 185 MDAIKLE-G----G----SPSRITAARGIVEAGIAVMGHVGLT 218 (243)
Q Consensus 185 AdaVKLE-G----g----~~~~~~~i~~L~~~GIPV~GHiGLt 218 (243)
+.+|++- + + .+....+.+.+.+.|+||+=|.|-.
T Consensus 119 ~~Gi~~~~~~~~~~~~~~d~~~~~~~~~a~e~glpv~iH~~~~ 161 (291)
T 3irs_A 119 IRIVNLEPGVWATPMHVDDRRLYPLYAFCEDNGIPVIMMTGGN 161 (291)
T ss_dssp CCCEEECGGGSSSCCCTTCGGGHHHHHHHHHTTCCEEEECSSS
T ss_pred CeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEeCCCC
Confidence 9999987 1 1 2334567899999999999999864
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=89.67 E-value=3.1 Score=37.49 Aligned_cols=93 Identities=18% Similarity=0.177 Sum_probs=61.3
Q ss_pred HHHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 104 sA~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
.|+-+.++|+|.+= +|+ + ++++.+..+++|+++. +..-|..|.- ++| +.+++++.+.+ +
T Consensus 153 ~a~~~~~~Gf~~iKik~g~---------~-----~~~~~~e~v~avr~a~G~d~~l~vDan-~~~--~~~~a~~~~~~-l 214 (371)
T 2ovl_A 153 QADRFLAGGFRAIKMKVGR---------P-----DLKEDVDRVSALREHLGDSFPLMVDAN-MKW--TVDGAIRAARA-L 214 (371)
T ss_dssp HHHHHHHTTCSCEEEECCC---------S-----SHHHHHHHHHHHHHHHCTTSCEEEECT-TCS--CHHHHHHHHHH-H
T ss_pred HHHHHHHcCCCEEEECCCC---------C-----CHHHHHHHHHHHHHHhCCCCeEEEECC-CCC--CHHHHHHHHHH-H
Confidence 34455578999883 553 1 4677789999999987 3455678875 577 68999988766 5
Q ss_pred HHhCCCEEEeCCCCCc-hHHHHHHHHH-cCCceeeccC
Q 026125 181 KEGGMDAIKLEGGSPS-RITAARGIVE-AGIAVMGHVG 216 (243)
Q Consensus 181 keaGAdaVKLEGg~~~-~~~~i~~L~~-~GIPV~GHiG 216 (243)
++.|.+. +|..... ...-.+.|.+ .+|||++-=.
T Consensus 215 ~~~~i~~--iEqP~~~~d~~~~~~l~~~~~iPI~~dE~ 250 (371)
T 2ovl_A 215 APFDLHW--IEEPTIPDDLVGNARIVRESGHTIAGGEN 250 (371)
T ss_dssp GGGCCSE--EECCSCTTCHHHHHHHHHHHCSCEEECTT
T ss_pred HhcCCCE--EECCCCcccHHHHHHHHhhCCCCEEeCCC
Confidence 5677775 5765321 1222445554 3899998533
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=89.56 E-value=2.4 Score=34.58 Aligned_cols=102 Identities=14% Similarity=0.179 Sum_probs=62.2
Q ss_pred CCCcEEEEecCCHH----HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCC
Q 026125 90 NGEPITMVTAYDYP----SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGT 164 (243)
Q Consensus 90 ~g~~ItmlTAYD~~----sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgs 164 (243)
+..-|..+...|.. .+..+.++|+|+|-+.-. .+ ...+.+ +.+++..+ ..++-+++
T Consensus 9 ~~~~i~~~~~~~~~~~~~~~~~~~~~G~~~iev~~~-------~~-----~~~~~i---~~ir~~~~~~~~ig~~~---- 69 (205)
T 1wa3_A 9 KHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFT-------VP-----DADTVI---KELSFLKEKGAIIGAGT---- 69 (205)
T ss_dssp HHCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETT-------ST-----THHHHH---HHTHHHHHTTCEEEEES----
T ss_pred hCCEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCC-------Ch-----hHHHHH---HHHHHHCCCCcEEEecc----
Confidence 33467777777765 467778899999954311 11 123334 44544443 33333442
Q ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccCCccc
Q 026125 165 YESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQ 220 (243)
Q Consensus 165 Y~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiGLtPQ 220 (243)
. .+++++ .... +.|||.| +..+.. ..+++...+.|+||+.-+ .||+
T Consensus 70 v-~~~~~~----~~a~-~~Gad~i-v~~~~~--~~~~~~~~~~g~~vi~g~-~t~~ 115 (205)
T 1wa3_A 70 V-TSVEQC----RKAV-ESGAEFI-VSPHLD--EEISQFCKEKGVFYMPGV-MTPT 115 (205)
T ss_dssp C-CSHHHH----HHHH-HHTCSEE-ECSSCC--HHHHHHHHHHTCEEECEE-CSHH
T ss_pred c-CCHHHH----HHHH-HcCCCEE-EcCCCC--HHHHHHHHHcCCcEECCc-CCHH
Confidence 3 367765 3344 5899999 776653 566888889999999732 3555
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=89.50 E-value=1.4 Score=40.69 Aligned_cols=135 Identities=13% Similarity=0.035 Sum_probs=71.7
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCH-HHHHHHHHcCCCEEEe--Cc--chhhhhcc----CCCCccCCH----HHHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDY-PSAVHLDSAGIDICLV--GD--SAAMVVHG----HDTTLPITL----EEMLVH 143 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~-~sA~iae~AGiDiILV--GD--Slgmv~lG----~~dT~~vTl----deMi~h 143 (243)
+.+|..++.+..+ |+ ..|+.+.++|+|.|=+ |. =+...+-= ..|.-.-++ .-.++.
T Consensus 154 ~~mt~~eI~~~i~-----------~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~ei 222 (377)
T 2r14_A 154 RALETDEIPGIVE-----------DYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEV 222 (377)
T ss_dssp EECCGGGHHHHHH-----------HHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHH-----------HHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHH
Confidence 3466666666432 23 4567888999999943 21 01000000 011111122 235667
Q ss_pred HHHHHcccCCCcEEeeC-CCCCC-----cCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc------hHHHHHHHHH-cCCc
Q 026125 144 CRAVARGAKRPLLVGDL-PFGTY-----ESSTNQAVDTAVRILKEGGMDAIKLEGGSPS------RITAARGIVE-AGIA 210 (243)
Q Consensus 144 ~~aV~Rga~~~fvVaDm-PfgsY-----~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~------~~~~i~~L~~-~GIP 210 (243)
+++|++..+.-.|.+.+ |+..+ +.+.+++++.|.++- +.|+|.|.+-++... ....++.+.+ -+||
T Consensus 223 v~aVr~avg~~~v~vrls~~~~~~~~~~~~~~~~~~~la~~le-~~Gvd~i~v~~~~~~~~~~~~~~~~~~~ik~~~~iP 301 (377)
T 2r14_A 223 VDAVAEVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLAGELD-RRGLAYLHFNEPDWIGGDITYPEGFREQMRQRFKGG 301 (377)
T ss_dssp HHHHHHHHCGGGEEEEECTTCCCTTCCCSCHHHHHHHHHHHHH-HTTCSEEEEECCC------CCCTTHHHHHHHHCCSE
T ss_pred HHHHHHHcCCCcEEEEeccccccCCCCCCCCHHHHHHHHHHHH-HcCCCEEEEeCCcccCCCCcchHHHHHHHHHHCCCC
Confidence 78888877531356665 22111 124677777776555 689999999775210 0122333433 3789
Q ss_pred eeeccCCcccccc
Q 026125 211 VMGHVGLTPQAIS 223 (243)
Q Consensus 211 V~GHiGLtPQ~~~ 223 (243)
|++==|++|+.+.
T Consensus 302 vi~~Ggi~~~~a~ 314 (377)
T 2r14_A 302 LIYCGNYDAGRAQ 314 (377)
T ss_dssp EEEESSCCHHHHH
T ss_pred EEEECCCCHHHHH
Confidence 9986566655443
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=89.47 E-value=2.3 Score=37.74 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHccc---------CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 137 LEEMLVHCRAVARGA---------KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 137 ldeMi~h~~aV~Rga---------~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
.+......++|++.. +.|+ ++-+.- . .+.++..+.|.++. ++|+|+|.+.++
T Consensus 187 ~~~~~~il~~vr~~~~~~~~~~g~~~Pv-~vKi~~-~--~~~~~~~~~a~~l~-~~Gvd~i~vsn~ 247 (336)
T 1f76_A 187 GEALDDLLTAIKNKQNDLQAMHHKYVPI-AVKIAP-D--LSEEELIQVADSLV-RHNIDGVIATNT 247 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCE-EEECCS-C--CCHHHHHHHHHHHH-HTTCSEEEECCC
T ss_pred HHHHHHHHHHHHHHHHhhhhcccccCce-EEEecC-C--CCHHHHHHHHHHHH-HcCCcEEEEeCC
Confidence 444455666676655 5674 445542 2 36677777776655 799999998754
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=89.40 E-value=3.3 Score=38.23 Aligned_cols=98 Identities=20% Similarity=0.146 Sum_probs=58.4
Q ss_pred HHHHHHhhhC-CCcEEEEec---CCHHHHHHHHHcCCCEEEeCcchhh---------h----------hccCCCCccCCH
Q 026125 81 LTHLRQKHKN-GEPITMVTA---YDYPSAVHLDSAGIDICLVGDSAAM---------V----------VHGHDTTLPITL 137 (243)
Q Consensus 81 v~~Lr~~kk~-g~~ItmlTA---YD~~sA~iae~AGiDiILVGDSlgm---------v----------~lG~~dT~~vTl 137 (243)
+..++..++. +.|+.+=.+ .+...|+.++++|+|.|.|+..-|. . ..++.+-+.-|.
T Consensus 176 ~~~i~~i~~~~~vPVivK~vG~g~s~~~A~~l~~aGad~I~V~g~GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~g~pt~ 255 (368)
T 3vkj_A 176 LEKLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESAKNFLDWGVPTA 255 (368)
T ss_dssp HHHHHHHHTTCSSCEEEECSSSCCCHHHHHHHHHTTCCEEECCCBTSBCHHHHHHHHHHHTTCTHHHHHHHTTTCSCBHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHhCCCCEEEEeCCCCCcccchhhhhcccccccchhhccccccccccHH
Confidence 4455554433 567766434 6889999999999999988654432 0 111222222233
Q ss_pred HHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 138 EEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 138 deMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
+- +. .|++..+...|++|=. . .+.+++ .+.+ ..|||+|.+-
T Consensus 256 ~~-l~---~v~~~~~~ipvia~GG---I-~~~~d~----~kal-~lGA~~v~ig 296 (368)
T 3vkj_A 256 AS-IM---EVRYSVPDSFLVGSGG---I-RSGLDA----AKAI-ALGADIAGMA 296 (368)
T ss_dssp HH-HH---HHHHHSTTCEEEEESS---C-CSHHHH----HHHH-HHTCSEEEEC
T ss_pred HH-HH---HHHHHcCCCcEEEECC---C-CCHHHH----HHHH-HcCCCEEEEc
Confidence 22 32 3444554445788854 4 377888 4556 3799999983
|
| >2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; neurological disorders, metal-dependent amidohydrolase, kynurenine pathway; HET: 13P; 2.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.38 E-value=1.8 Score=37.58 Aligned_cols=115 Identities=15% Similarity=0.134 Sum_probs=66.2
Q ss_pred ecCCHHH-HHHHHHcCCCEE-EeCcchhhhhccCCCCccCCH---HHHHHHHHHHHcccCCCcEE-eeCCCCCCcCCHHH
Q 026125 98 TAYDYPS-AVHLDSAGIDIC-LVGDSAAMVVHGHDTTLPITL---EEMLVHCRAVARGAKRPLLV-GDLPFGTYESSTNQ 171 (243)
Q Consensus 98 TAYD~~s-A~iae~AGiDiI-LVGDSlgmv~lG~~dT~~vTl---deMi~h~~aV~Rga~~~fvV-aDmPfgsY~~s~e~ 171 (243)
..||... -..++++|||.. +++.. + .++|......+. ...-..+..+++..|.-|+- +-+|. .++++
T Consensus 52 ~~~~~~~~l~~m~~~GV~~~v~~~~~-~--~~~~~~~~~~~~~~~~~~N~~~~~~~~~~p~r~~~~~~l~~----~~~~~ 124 (336)
T 2wm1_A 52 NCWDPEVRIREMDQKGVTVQALSTVP-V--MFSYWAKPEDTLNLCQLLNNDLASTVVSYPRRFVGLGTLPM----QAPEL 124 (336)
T ss_dssp GGTCHHHHHHHHHHHTCCEEEEECCG-G--GGCTTSCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEECCCT----TSHHH
T ss_pred ccCCHHHHHHHHHHCCCCEEEECCCc-h--hhcccCCHHHHHHHHHHHHHHHHHHHHhccCceeEEEeCCC----cCHHH
Confidence 4455432 234678999965 45422 1 222221100000 01122233455555655543 45554 14677
Q ss_pred HHHHHHHHHHHhCCCEEEeCC-------CCCchHHHHHHHHHcCCceeeccCCcc
Q 026125 172 AVDTAVRILKEGGMDAIKLEG-------GSPSRITAARGIVEAGIAVMGHVGLTP 219 (243)
Q Consensus 172 Av~nA~Rl~keaGAdaVKLEG-------g~~~~~~~i~~L~~~GIPV~GHiGLtP 219 (243)
+++...|++++.|+.+|++-. +.+....+.+.+.+.|+||+=|.+-.+
T Consensus 125 a~~el~~~~~~~g~~Gv~l~~~~~~~~l~d~~~~~~~~~~~e~~lpv~iH~~~~~ 179 (336)
T 2wm1_A 125 AVKEMERCVKELGFPGVQIGTHVNEWDLNAQELFPVYAAAERLKCSLFVHPWDMQ 179 (336)
T ss_dssp HHHHHHHHHHTSCCSEEEEESEETTEETTCGGGHHHHHHHHHHTCEEEEECCSCC
T ss_pred HHHHHHHHHHccCCeEEEECCcCCCCCCCCccHHHHHHHHHHcCCEEEECCCCCC
Confidence 777778888778999998732 123356778999999999999998654
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=89.33 E-value=4.6 Score=35.49 Aligned_cols=91 Identities=19% Similarity=0.250 Sum_probs=60.2
Q ss_pred HHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEE
Q 026125 109 DSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAI 188 (243)
Q Consensus 109 e~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaV 188 (243)
-+.|+|-|++..|-|=. -.+|.||-..-.+.+++.+.. |++... + .|.+++++.+...- +.|||++
T Consensus 29 i~~Gv~gl~v~GttGE~-------~~Ls~~Er~~v~~~~~~~~~g--vi~Gvg--~--~~t~~ai~la~~A~-~~Gadav 94 (286)
T 2r91_A 29 TSKGVDVVFVAGTTGLG-------PALSLQEKMELTDAATSAARR--VIVQVA--S--LNADEAIALAKYAE-SRGAEAV 94 (286)
T ss_dssp HHTTCCEEEETSTTTTG-------GGSCHHHHHHHHHHHHHHCSS--EEEECC--C--SSHHHHHHHHHHHH-HTTCSEE
T ss_pred HHCCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCC--EEEeeC--C--CCHHHHHHHHHHHH-hcCCCEE
Confidence 36899998776554331 247899988888888877765 676652 3 37899999886654 6999999
Q ss_pred EeCCCC-------CchHHHHHHHHHc-CCceee
Q 026125 189 KLEGGS-------PSRITAARGIVEA-GIAVMG 213 (243)
Q Consensus 189 KLEGg~-------~~~~~~i~~L~~~-GIPV~G 213 (243)
-+---. +....-.+++.++ ++||+=
T Consensus 95 lv~~P~y~~~~s~~~l~~~f~~va~a~~lPiil 127 (286)
T 2r91_A 95 ASLPPYYFPRLSERQIAKYFRDLCSAVSIPVFL 127 (286)
T ss_dssp EECCSCSSTTCCHHHHHHHHHHHHHHCSSCEEE
T ss_pred EEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 764321 1122223455554 788863
|
| >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A | Back alignment and structure |
|---|
Probab=89.23 E-value=4.7 Score=35.51 Aligned_cols=108 Identities=14% Similarity=0.127 Sum_probs=71.0
Q ss_pred HHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCE
Q 026125 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDA 187 (243)
Q Consensus 108 ae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAda 187 (243)
.-+.|+|-|++..|-|=. ..+|.||-..-.+.+++.+.. |++.. |+ .|.+++++.+...- +.|||+
T Consensus 29 li~~Gv~gl~v~GtTGE~-------~~Ls~eEr~~v~~~~~~~~~g--ViaGv--g~--~~t~~ai~la~~A~-~~Gada 94 (288)
T 2nuw_A 29 LLEKGIDAIFVNGTTGLG-------PALSKDEKRQNLNALYDVTHK--LIFQV--GS--LNLNDVMELVKFSN-EMDILG 94 (288)
T ss_dssp HHHTTCCEEEETSTTTTG-------GGSCHHHHHHHHHHHTTTCSC--EEEEC--CC--SCHHHHHHHHHHHH-TSCCSE
T ss_pred HHHcCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCC--eEEee--CC--CCHHHHHHHHHHHH-hcCCCE
Confidence 346799998776554331 247899988888888887766 66664 33 37899999886654 799999
Q ss_pred EEeCCCC-------CchHHHHHHHHH-cCCceee-------ccCCcccccccccCccccc
Q 026125 188 IKLEGGS-------PSRITAARGIVE-AGIAVMG-------HVGLTPQAISVLGGFRPQG 232 (243)
Q Consensus 188 VKLEGg~-------~~~~~~i~~L~~-~GIPV~G-------HiGLtPQ~~~~~GGykvqG 232 (243)
+-+---. +....-.+++.+ .++||+= ++-|.|.....+ .+.|
T Consensus 95 vlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L---nIvg 151 (288)
T 2nuw_A 95 VSSHSPYYFPRLPEKFLAKYYEEIARISSHSLYIYNYPAATGYDIPPSILKSL---PVKG 151 (288)
T ss_dssp EEECCCCSSCSCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHTTT---TEEE
T ss_pred EEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEECchHhCcCCCHHHHhcc---EEEE
Confidence 9764321 112223455665 4788763 455777776665 4555
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=89.21 E-value=2.1 Score=39.94 Aligned_cols=67 Identities=24% Similarity=0.439 Sum_probs=43.5
Q ss_pred HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 102 ~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
...|.++.++|+|.|.++-+ .|+. +..+...+.+++.. +.|++.+ .. .+.+.+ .+++
T Consensus 235 ~~~a~~l~~~G~d~ivi~~a-----~g~~-------~~~~~~i~~l~~~~p~~pvi~G-----~v-~t~~~a----~~~~ 292 (491)
T 1zfj_A 235 FERAEALFEAGADAIVIDTA-----HGHS-------AGVLRKIAEIRAHFPNRTLIAG-----NI-ATAEGA----RALY 292 (491)
T ss_dssp HHHHHHHHHHTCSEEEECCS-----CTTC-------HHHHHHHHHHHHHCSSSCEEEE-----EE-CSHHHH----HHHH
T ss_pred HHHHHHHHHcCCCeEEEeee-----cCcc-------hhHHHHHHHHHHHCCCCcEeCC-----Cc-cCHHHH----HHHH
Confidence 56788899999999988842 2432 23455566777766 4554422 22 355555 4566
Q ss_pred HHhCCCEEEeC
Q 026125 181 KEGGMDAIKLE 191 (243)
Q Consensus 181 keaGAdaVKLE 191 (243)
+.|||+|.+-
T Consensus 293 -~~Gad~I~vg 302 (491)
T 1zfj_A 293 -DAGVDVVKVG 302 (491)
T ss_dssp -HTTCSEEEEC
T ss_pred -HcCCCEEEEC
Confidence 6999999983
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=89.11 E-value=2.2 Score=38.08 Aligned_cols=94 Identities=20% Similarity=0.194 Sum_probs=61.8
Q ss_pred cCCHHHHHHHHHcCC-CEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHH
Q 026125 99 AYDYPSAVHLDSAGI-DICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAV 177 (243)
Q Consensus 99 AYD~~sA~iae~AGi-DiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~ 177 (243)
.-|...|..+.++|. ++|..+ .++.+++....+.+++-++.|| .+++-... .+.++. .
T Consensus 23 ~s~~~la~av~~aG~lG~i~~~--------------~~~~~~~~~~i~~i~~~~~~p~-gvnl~~~~--~~~~~~----~ 81 (332)
T 2z6i_A 23 VADGDLAGAVSKAGGLGIIGGG--------------NAPKEVVKANIDKIKSLTDKPF-GVNIMLLS--PFVEDI----V 81 (332)
T ss_dssp TCCHHHHHHHHHHTSBEEEECT--------------TCCHHHHHHHHHHHHHHCCSCE-EEEECTTS--TTHHHH----H
T ss_pred CCcHHHHHHHHhCCCcEEeCCC--------------CCCHHHHHHHHHHHHHhcCCCE-EEEecCCC--CCHHHH----H
Confidence 346778888889886 455443 1467777777777877666665 34432211 133444 3
Q ss_pred HHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeecc
Q 026125 178 RILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHV 215 (243)
Q Consensus 178 Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHi 215 (243)
+.+.+.|+|+|.+-+|.. ..+++++.+.|+||+.-+
T Consensus 82 ~~a~~~g~d~V~~~~g~p--~~~i~~l~~~g~~v~~~v 117 (332)
T 2z6i_A 82 DLVIEEGVKVVTTGAGNP--SKYMERFHEAGIIVIPVV 117 (332)
T ss_dssp HHHHHTTCSEEEECSSCG--GGTHHHHHHTTCEEEEEE
T ss_pred HHHHHCCCCEEEECCCCh--HHHHHHHHHcCCeEEEEe
Confidence 455578999999988753 345788888999998654
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=89.01 E-value=2.5 Score=34.75 Aligned_cols=82 Identities=17% Similarity=0.094 Sum_probs=51.2
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHh
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~kea 183 (243)
.++.+.++|+|+|-+.+.-. + .+...+.+++..+.+|++++.. . .++++. +...+.
T Consensus 24 ~~~~~~~~G~~~i~l~~~~~-------~--------~~~~i~~i~~~~~~~l~vg~g~---~-~~~~~i-----~~a~~~ 79 (212)
T 2v82_A 24 HVGAVIDAGFDAVEIPLNSP-------Q--------WEQSIPAIVDAYGDKALIGAGT---V-LKPEQV-----DALARM 79 (212)
T ss_dssp HHHHHHHHTCCEEEEETTST-------T--------HHHHHHHHHHHHTTTSEEEEEC---C-CSHHHH-----HHHHHT
T ss_pred HHHHHHHCCCCEEEEeCCCh-------h--------HHHHHHHHHHhCCCCeEEEecc---c-cCHHHH-----HHHHHc
Confidence 46667788999997765421 1 1233455666566778886532 2 245543 344478
Q ss_pred CCCEEEeCCCCCchHHHHHHHHHcCCcee
Q 026125 184 GMDAIKLEGGSPSRITAARGIVEAGIAVM 212 (243)
Q Consensus 184 GAdaVKLEGg~~~~~~~i~~L~~~GIPV~ 212 (243)
|||+|.+..- ...+++...+.|++++
T Consensus 80 Gad~V~~~~~---~~~~~~~~~~~g~~~~ 105 (212)
T 2v82_A 80 GCQLIVTPNI---HSEVIRRAVGYGMTVC 105 (212)
T ss_dssp TCCEEECSSC---CHHHHHHHHHTTCEEE
T ss_pred CCCEEEeCCC---CHHHHHHHHHcCCCEE
Confidence 9999986543 2455677778888864
|
| >2dvt_A Thermophilic reversible gamma-resorcylate decarbo; TIM barrel, lyase; 1.70A {Rhizobium SP} SCOP: c.1.9.15 PDB: 2dvu_A* 2dvx_A* 3s4t_A* | Back alignment and structure |
|---|
Probab=89.00 E-value=1.8 Score=37.00 Aligned_cols=107 Identities=14% Similarity=0.117 Sum_probs=61.2
Q ss_pred HHHHHHcCCCEE-EeCcchhhhhccCCCCccCCHH---HHHHHHHHHHcccCCCcEE-eeCCCCCCcCCHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDIC-LVGDSAAMVVHGHDTTLPITLE---EMLVHCRAVARGAKRPLLV-GDLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 105 A~iae~AGiDiI-LVGDSlgmv~lG~~dT~~vTld---eMi~h~~aV~Rga~~~fvV-aDmPfgsY~~s~e~Av~nA~Rl 179 (243)
-..++++|||.. +++.+. ...|+.|.. ...+ +.-..+..+++.-|.-|+- +-+|. .+++++++-..|+
T Consensus 44 l~~m~~~GV~~~v~~~~~p--~~~~~~d~~-~~~~~~~~~n~~~~~~~~~~p~r~~~~~~v~p----~~~~~~~~el~~~ 116 (327)
T 2dvt_A 44 LKLMDAHGIETMILSLNAP--AVQAIPDRR-KAIEIARRANDVLAEECAKRPDRFLAFAALPL----QDPDAATEELQRC 116 (327)
T ss_dssp HHHHHHTTEEEEEEEECSS--GGGGCCCHH-HHHHHHHHHHHHHHHHHHHCTTTEEEEECCCT----TSHHHHHHHHHHH
T ss_pred HHHhhhcCCcEEEEeCCCC--cccccCChH-HHHHHHHHHHHHHHHHHhhCCCceEEEeecCc----CCHHHHHHHHHHH
Confidence 344778999965 454322 223333210 0000 1111222234445554432 44443 2466777777888
Q ss_pred HHHhCCCEEEeCCC-------------CCchHHHHHHHHHcCCceeeccCCc
Q 026125 180 LKEGGMDAIKLEGG-------------SPSRITAARGIVEAGIAVMGHVGLT 218 (243)
Q Consensus 180 ~keaGAdaVKLEGg-------------~~~~~~~i~~L~~~GIPV~GHiGLt 218 (243)
+++.|+.+|++-.. .+....+.+.+.+.|+||+=|.|-.
T Consensus 117 ~~~~g~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~lpv~iH~~~~ 168 (327)
T 2dvt_A 117 VNDLGFVGALVNGFSQEGDGQTPLYYDLPQYRPFWGEVEKLDVPFYLHPRNP 168 (327)
T ss_dssp HHTTCCCEEEEESSBCCTTCCSCBCTTSGGGHHHHHHHHHHTCCEEEECCCC
T ss_pred HhcCCceEEEECCCCCCCcccCCCCCCCcchHHHHHHHHHcCCeEEECCCCC
Confidence 87779999998322 1234567888999999999999843
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=88.91 E-value=3.6 Score=38.57 Aligned_cols=106 Identities=9% Similarity=0.038 Sum_probs=59.1
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEE-EeCc----------chhhhh-ccCCCCc-cCCHHHHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC-LVGD----------SAAMVV-HGHDTTL-PITLEEMLVH 143 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiI-LVGD----------Slgmv~-lG~~dT~-~vTldeMi~h 143 (243)
+.+|..++.+..+. | ...|+.|.+||||.| +=|. ...+.- -.|-... .--+.-.++-
T Consensus 158 r~mt~~eI~~ii~~---------F-~~AA~rA~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~yGGs~lenR~Rf~~ev 227 (419)
T 3l5a_A 158 IAMSHEKINSIIQQ---------Y-RDATLRAIKAGFDGVEISIAQRLLIQTFFSTFSNRRTDHYGADSLKNRARLCLEV 227 (419)
T ss_dssp EECCHHHHHHHHHH---------H-HHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSTTCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHH---------H-HHHHHHHHHcCCCEEEECCccchHHHHccCCcccccccCCCCchhhhhhHHHHHH
Confidence 45788887776531 1 235678899999999 4331 111110 0011111 1122335667
Q ss_pred HHHHHccc----CCCcEE-eeC-CC----C--CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 144 CRAVARGA----KRPLLV-GDL-PF----G--TYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 144 ~~aV~Rga----~~~fvV-aDm-Pf----g--sY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
+++|++.. +..|.| .=+ |+ + ++ +.+++++.|.++.+++|+|.|.+-++.
T Consensus 228 v~aVr~~v~~~~~~~f~v~vRis~~~~~~~~~G~--~~ed~~~la~~L~~~~Gvd~I~vs~g~ 288 (419)
T 3l5a_A 228 MRAVQEVIDKEAPDNFILGFRATPEETRGSDLGY--TIDEFNQLIDWVMDVSNIQYLAIASWG 288 (419)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEECSCEEETTEEEE--CHHHHHHHHHHHHHHSCCCCEEECCTT
T ss_pred HHHHHHHHhhhcCCCeeEEEecccccccCCCCCC--CHHHHHHHHHHHHhhcCCcEEEEeeCC
Confidence 77887765 444433 222 11 1 33 578888888766632899999998763
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=88.84 E-value=5.7 Score=35.25 Aligned_cols=106 Identities=22% Similarity=0.259 Sum_probs=66.0
Q ss_pred HHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 026125 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (243)
Q Consensus 108 ae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAd 186 (243)
.-++|+|-|++..|-|=. ..+|.||-..-.+.+++.+. +..|++... + .|.+++++.+...- +.|||
T Consensus 42 li~~Gv~gl~v~GtTGE~-------~~Ls~eEr~~v~~~~~~~~~grvpViaGvg--~--~~t~~ai~la~~A~-~~Gad 109 (301)
T 1xky_A 42 LIDNGTTAIVVGGTTGES-------PTLTSEEKVALYRHVVSVVDKRVPVIAGTG--S--NNTHASIDLTKKAT-EVGVD 109 (301)
T ss_dssp HHHTTCCEEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHTTSSCEEEECC--C--SCHHHHHHHHHHHH-HTTCS
T ss_pred HHHcCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCCCceEEeCCC--C--CCHHHHHHHHHHHH-hcCCC
Confidence 446799998876555331 24788887777777766543 444666652 3 37899999886654 79999
Q ss_pred EEEeCCC------CCchHHHHHHHHHc-CCceee-------ccCCcccccccc
Q 026125 187 AIKLEGG------SPSRITAARGIVEA-GIAVMG-------HVGLTPQAISVL 225 (243)
Q Consensus 187 aVKLEGg------~~~~~~~i~~L~~~-GIPV~G-------HiGLtPQ~~~~~ 225 (243)
++-+--- .+....-.+++.++ ++||+= ++-|.|.....+
T Consensus 110 avlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L 162 (301)
T 1xky_A 110 AVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRL 162 (301)
T ss_dssp EEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHH
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHH
Confidence 9976432 11122334566664 788763 344566554443
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=88.69 E-value=1.7 Score=40.01 Aligned_cols=132 Identities=11% Similarity=0.037 Sum_probs=74.7
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCH-HHHHHHHHcCCCEE-EeCc---chhhhhc----cCCCCccCCHH----HHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDY-PSAVHLDSAGIDIC-LVGD---SAAMVVH----GHDTTLPITLE----EMLVH 143 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~-~sA~iae~AGiDiI-LVGD---Slgmv~l----G~~dT~~vTld----eMi~h 143 (243)
+.+|..++.+..+ || ..|+.|.+||||.| +=+. =+.-.+- -..|.-.=+++ -.++-
T Consensus 141 r~mt~~eI~~ii~-----------~f~~AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~ei 209 (362)
T 4ab4_A 141 RALETEEINDIVE-----------AYRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEV 209 (362)
T ss_dssp EECCHHHHHHHHH-----------HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHH-----------HHHHHHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHH
Confidence 5689999988754 23 45778899999999 4231 1100000 01111112343 34677
Q ss_pred HHHHHcccCCCcEEeeCC----CCCC--cCCHHHHHHHHHHHHHHhCCCEEEeCCCC---CchHHHHHHHHHcCCceeec
Q 026125 144 CRAVARGAKRPLLVGDLP----FGTY--ESSTNQAVDTAVRILKEGGMDAIKLEGGS---PSRITAARGIVEAGIAVMGH 214 (243)
Q Consensus 144 ~~aV~Rga~~~fvVaDmP----fgsY--~~s~e~Av~nA~Rl~keaGAdaVKLEGg~---~~~~~~i~~L~~~GIPV~GH 214 (243)
+++|++..+.-.|.+-+- |.+. ..+.+++++.|.++- +.|+|.|.+-++. +.... |+..+ .|||++=
T Consensus 210 v~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~-~~Gvd~i~v~~~~~~~~~~~~-ik~~~--~iPvi~~ 285 (362)
T 4ab4_A 210 TDAAIEVWGAQRVGVHLAPRADAHDMGDADRAETFTYVARELG-KRGIAFICSREREADDSIGPL-IKEAF--GGPYIVN 285 (362)
T ss_dssp HHHHHHHHCGGGEEEEECTTCCSSSCCCTTHHHHHHHHHHHHH-HTTCSEEEEECCCCTTCCHHH-HHHHH--CSCEEEE
T ss_pred HHHHHHhcCCCceEEEeeccccccccCCCCcHHHHHHHHHHHH-HhCCCEEEECCCCCCHHHHHH-HHHHC--CCCEEEe
Confidence 788888775313444432 1111 112456777766554 6899999997763 22223 44444 6899987
Q ss_pred cCCcccccc
Q 026125 215 VGLTPQAIS 223 (243)
Q Consensus 215 iGLtPQ~~~ 223 (243)
=|++|+.+.
T Consensus 286 Ggit~e~a~ 294 (362)
T 4ab4_A 286 ERFDKASAN 294 (362)
T ss_dssp SSCCHHHHH
T ss_pred CCCCHHHHH
Confidence 777776544
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=88.63 E-value=7 Score=38.51 Aligned_cols=99 Identities=13% Similarity=0.112 Sum_probs=66.4
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCC-ccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT-~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
+..+++.+ ..-+|..=++-++..|+...++|+|.+.||=.-|..+-=..-+ ..+..---++.|..+++....| ||+|
T Consensus 313 i~~ik~~~-p~~~viaGNVaT~e~a~~Li~aGAD~vkVGiGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~~~vp-vIAD 390 (556)
T 4af0_A 313 IKWIKQTY-PKIDVIAGNVVTREQAAQLIAAGADGLRIGMGSGSICITQEVMAVGRPQGTAVYAVAEFASRFGIP-CIAD 390 (556)
T ss_dssp HHHHHHHC-TTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCCTTTCCSCCCHHHHHHHHHHHHGGGTCC-EEEE
T ss_pred HHHHHhhC-CcceEEeccccCHHHHHHHHHcCCCEEeecCCCCcccccccccCCCCcHHHHHHHHHHHHHHcCCC-EEec
Confidence 33444433 2467777799999999999999999999986655543211111 1233344567777788887766 8999
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
=.. . ++-+. .+.+ .+|||+|.+
T Consensus 391 GGI-~---~sGDi----~KAl-aaGAd~VMl 412 (556)
T 4af0_A 391 GGI-G---NIGHI----AKAL-ALGASAVMM 412 (556)
T ss_dssp SCC-C---SHHHH----HHHH-HTTCSEEEE
T ss_pred CCc-C---cchHH----HHHh-hcCCCEEEE
Confidence 655 2 45555 3556 589999998
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=88.53 E-value=2 Score=38.86 Aligned_cols=87 Identities=10% Similarity=0.145 Sum_probs=58.7
Q ss_pred HHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 105 A~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
|+-+.++|++.+= +|+ + ++++.+..+++|+++.+ ..-+..|.- ++| +.+++++.+.++ +
T Consensus 153 a~~~~~~Gf~~iKik~g~---------~-----~~~~~~e~v~avr~a~g~~~~l~vDan-~~~--~~~~a~~~~~~l-~ 214 (378)
T 2qdd_A 153 IAEAAAQGYRTHSAKIGG---------S-----DPAQDIARIEAISAGLPDGHRVTFDVN-RAW--TPAIAVEVLNSV-R 214 (378)
T ss_dssp HHHHHHHTCCEEEEECCS---------S-----CHHHHHHHHHHHHHSCCTTCEEEEECT-TCC--CHHHHHHHHTSC-C
T ss_pred HHHHHHHhhhheeecCCC---------C-----ChHHHHHHHHHHHHHhCCCCEEEEeCC-CCC--CHHHHHHHHHHh-C
Confidence 4445577999984 443 2 46777899999999874 445678964 577 688987776554 3
Q ss_pred HhCCCEEEeCCCCCchHHHHHHHHHc-CCceeec
Q 026125 182 EGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 182 eaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~GH 214 (243)
.| . .+|.... ...-.+.|.+. +|||++=
T Consensus 215 -~~--i-~iEqP~~-d~~~~~~l~~~~~iPI~~d 243 (378)
T 2qdd_A 215 -AR--D-WIEQPCQ-TLDQCAHVARRVANPIMLD 243 (378)
T ss_dssp -CC--C-EEECCSS-SHHHHHHHHTTCCSCEEEC
T ss_pred -CC--c-EEEcCCC-CHHHHHHHHHhCCCCEEEC
Confidence 44 4 7887654 23335666653 8999874
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=88.37 E-value=6.2 Score=35.11 Aligned_cols=106 Identities=11% Similarity=0.100 Sum_probs=65.7
Q ss_pred HHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 026125 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (243)
Q Consensus 108 ae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAd 186 (243)
.-++|+|-|++..|-|=. -.+|.||-..-.+.+++.+. +..|++.. |+ .|.+++++.+...- +.|||
T Consensus 42 li~~Gv~gl~v~GtTGE~-------~~Ls~eEr~~vi~~~~~~~~grvpViaGv--g~--~st~~ai~la~~A~-~~Gad 109 (306)
T 1o5k_A 42 QLENGVNALIVLGTTGES-------PTVNEDEREKLVSRTLEIVDGKIPVIVGA--GT--NSTEKTLKLVKQAE-KLGAN 109 (306)
T ss_dssp HHHTTCCEEEESSGGGTG-------GGCCHHHHHHHHHHHHHHHTTSSCEEEEC--CC--SCHHHHHHHHHHHH-HHTCS
T ss_pred HHHcCCCEEEeCccccch-------hhCCHHHHHHHHHHHHHHhCCCCeEEEcC--CC--ccHHHHHHHHHHHH-hcCCC
Confidence 346799999876565432 24788887777777666443 44466665 33 37899999886654 79999
Q ss_pred EEEeCCC------CCchHHHHHHHHHc-CCceee-------ccCCcccccccc
Q 026125 187 AIKLEGG------SPSRITAARGIVEA-GIAVMG-------HVGLTPQAISVL 225 (243)
Q Consensus 187 aVKLEGg------~~~~~~~i~~L~~~-GIPV~G-------HiGLtPQ~~~~~ 225 (243)
++-+--- .+....-.+++.++ ++||+= ++-|.|.....+
T Consensus 110 avlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L 162 (306)
T 1o5k_A 110 GVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARI 162 (306)
T ss_dssp EEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEECHHHHSCCCCHHHHHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCCHHHHHHH
Confidence 9976432 11122334566664 688763 344556554433
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=88.32 E-value=1.8 Score=39.69 Aligned_cols=134 Identities=11% Similarity=0.041 Sum_probs=72.1
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCH-HHHHHHHHcCCCEEEeCcchh----hhh----ccCCCCccCCHH----HHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDY-PSAVHLDSAGIDICLVGDSAA----MVV----HGHDTTLPITLE----EMLVH 143 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~-~sA~iae~AGiDiILVGDSlg----mv~----lG~~dT~~vTld----eMi~h 143 (243)
+.+|..++....+ |+ ..|+.+.++|+|.|=+--.-| ... --..|.-.-+++ -.++-
T Consensus 149 ~~mt~~eI~~~i~-----------~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~ei 217 (365)
T 2gou_A 149 RAMTKADIAQVIA-----------DYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEV 217 (365)
T ss_dssp EECCHHHHHHHHH-----------HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHH
T ss_pred CcCCHHHHHHHHH-----------HHHHHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHH
Confidence 4578888877543 33 456778899999994311111 000 001111112333 34566
Q ss_pred HHHHHcccC-CCcEEeeCC----CCC--CcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHH-cCCc
Q 026125 144 CRAVARGAK-RPLLVGDLP----FGT--YESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVE-AGIA 210 (243)
Q Consensus 144 ~~aV~Rga~-~~fvVaDmP----fgs--Y~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~-~GIP 210 (243)
+++|++..+ .++ ..-+- |.+ -..+.+++++.|.++. +.|+|.|.+-++.. .-...++.+.+ -+||
T Consensus 218 v~avr~~vg~~pv-~vris~~~~~~~~~~~~~~~~~~~~a~~l~-~~G~d~i~v~~~~~~~~~~~~~~~~~~i~~~~~iP 295 (365)
T 2gou_A 218 VAALVDAIGAERV-GVRLAPLTTLNGTVDADPILTYTAAAALLN-KHRIVYLHIAEVDWDDAPDTPVSFKRALREAYQGV 295 (365)
T ss_dssp HHHHHHHHCGGGE-EEEECSSCCTTSCCCSSHHHHHHHHHHHHH-HTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSE
T ss_pred HHHHHHHcCCCcE-EEEEccccccCCCCCCCCHHHHHHHHHHHH-HcCCCEEEEeCCCcCCCCCccHHHHHHHHHHCCCc
Confidence 677877764 353 33211 110 1125677777776555 68999999987521 01133444443 2789
Q ss_pred eeeccCCcccccc
Q 026125 211 VMGHVGLTPQAIS 223 (243)
Q Consensus 211 V~GHiGLtPQ~~~ 223 (243)
|++==|++|+.+.
T Consensus 296 vi~~Ggi~~~~a~ 308 (365)
T 2gou_A 296 LIYAGRYNAEKAE 308 (365)
T ss_dssp EEEESSCCHHHHH
T ss_pred EEEeCCCCHHHHH
Confidence 9886666665443
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=88.24 E-value=5.1 Score=35.38 Aligned_cols=92 Identities=18% Similarity=0.146 Sum_probs=60.8
Q ss_pred HHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCE
Q 026125 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDA 187 (243)
Q Consensus 108 ae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAda 187 (243)
.-+.|+|-|++..|-|=. ..+|.||-..-.+.+++.+.. |++.. |+ .|.+++++.+... ++.|||+
T Consensus 29 li~~Gv~gl~~~GttGE~-------~~Ls~eEr~~v~~~~~~~~~g--viaGv--g~--~~t~~ai~la~~A-~~~Gada 94 (293)
T 1w3i_A 29 LIRKGIDKLFVNGTTGLG-------PSLSPEEKLENLKAVYDVTNK--IIFQV--GG--LNLDDAIRLAKLS-KDFDIVG 94 (293)
T ss_dssp HHHTTCCEEEESSTTTTG-------GGSCHHHHHHHHHHHHTTCSC--EEEEC--CC--SCHHHHHHHHHHG-GGSCCSE
T ss_pred HHHcCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHcCC--EEEec--CC--CCHHHHHHHHHHH-HhcCCCE
Confidence 346899988766554331 247899988888888887766 67665 23 3789999888655 4799999
Q ss_pred EEeCCCC-------CchHHHHHHHHHc-CCceee
Q 026125 188 IKLEGGS-------PSRITAARGIVEA-GIAVMG 213 (243)
Q Consensus 188 VKLEGg~-------~~~~~~i~~L~~~-GIPV~G 213 (243)
+-+---. +....-.+++.++ ++||+=
T Consensus 95 vlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiil 128 (293)
T 1w3i_A 95 IASYAPYYYPRMSEKHLVKYFKTLCEVSPHPVYL 128 (293)
T ss_dssp EEEECCCSCSSCCHHHHHHHHHHHHHHCSSCEEE
T ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEE
Confidence 9763221 1122233455654 788863
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=88.23 E-value=2.4 Score=35.58 Aligned_cols=71 Identities=27% Similarity=0.252 Sum_probs=45.7
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ke 182 (243)
..|+.++++|+|.|.+-|--+. .......+...+.|++..+.|+++.+ .+ .+++++ .+++ +
T Consensus 35 ~~a~~~~~~Gad~i~v~d~~~~---------~~~~~~~~~~i~~i~~~~~iPvi~~G----gi-~~~~~~----~~~~-~ 95 (252)
T 1ka9_F 35 EAARAYDEAGADELVFLDISAT---------HEERAILLDVVARVAERVFIPLTVGG----GV-RSLEDA----RKLL-L 95 (252)
T ss_dssp HHHHHHHHHTCSCEEEEECCSS---------TTCHHHHHHHHHHHHTTCCSCEEEES----SC-CSHHHH----HHHH-H
T ss_pred HHHHHHHHcCCCEEEEEcCCcc---------ccCccccHHHHHHHHHhCCCCEEEEC----Cc-CCHHHH----HHHH-H
Confidence 3577889999998865453211 11233446667889988888865532 34 466665 4455 5
Q ss_pred hCCCEEEeCC
Q 026125 183 GGMDAIKLEG 192 (243)
Q Consensus 183 aGAdaVKLEG 192 (243)
.|||+|.+-.
T Consensus 96 ~Gad~V~lg~ 105 (252)
T 1ka9_F 96 SGADKVSVNS 105 (252)
T ss_dssp HTCSEEEECH
T ss_pred cCCCEEEECh
Confidence 7899999843
|
| >2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B* | Back alignment and structure |
|---|
Probab=88.10 E-value=7 Score=35.41 Aligned_cols=94 Identities=16% Similarity=0.090 Sum_probs=60.6
Q ss_pred HHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCC
Q 026125 106 VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGM 185 (243)
Q Consensus 106 ~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGA 185 (243)
+-..+.|.|+|=+|-. -+.|+..+++.||++..++.|++..+.|+.|.|..-..| ..+++ ...+ ++|+
T Consensus 81 ~~~v~~GAdiIDIg~~-----StrP~~~~vs~eee~~vV~~v~~~~~vplsI~DT~~~~~---~~~V~---eaal-~aga 148 (310)
T 2h9a_B 81 KKCVEYGADIVALRLV-----SAHPDGQNRSGAELAEVCKAVADAIDVPLMIIGCGVEEK---DAEIF---PVIG-EALS 148 (310)
T ss_dssp HHHHHTTCSEEEEECG-----GGCTTTTCCCHHHHHHHHHHHHHHCSSCEEEECCSCHHH---HHHHH---HHHH-HHTT
T ss_pred HHHHHcCCcEEEEeCc-----cCCCCCCCCCHHHHHHHHHHHHHhCCceEEEECCCCCCC---CHHHH---HHHH-HhCC
Confidence 3344789999977742 135677789999999999999988777755558421113 22333 3344 3677
Q ss_pred C---EEE-eCCCCCchHHHHHHHHHcCCceee
Q 026125 186 D---AIK-LEGGSPSRITAARGIVEAGIAVMG 213 (243)
Q Consensus 186 d---aVK-LEGg~~~~~~~i~~L~~~GIPV~G 213 (243)
+ .|+ +.++ ..+.+.+...+.|.||+.
T Consensus 149 ~~k~iINdvs~~--~~~~~~~~aa~~g~~vv~ 178 (310)
T 2h9a_B 149 GRNCLLSSATKD--NYKPIVATCMVHGHSVVA 178 (310)
T ss_dssp TSCCEEEEECTT--THHHHHHHHHHHTCEEEE
T ss_pred CCCCEEEECCCC--ccHHHHHHHHHhCCCEEE
Confidence 6 554 3443 235556667788888875
|
| >1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A | Back alignment and structure |
|---|
Probab=88.09 E-value=2.3 Score=37.82 Aligned_cols=77 Identities=16% Similarity=0.103 Sum_probs=47.0
Q ss_pred HHHHHHHHcCCCEE-EeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC---CCc-EEeeCCCCCCcCCHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK---RPL-LVGDLPFGTYESSTNQAVDTAV 177 (243)
Q Consensus 103 ~sA~iae~AGiDiI-LVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~---~~f-vVaDmPfgsY~~s~e~Av~nA~ 177 (243)
.+++.|-+.|.|-| +|= .+|...-|.. +++....++|+++++ .++ +|..+.+ .+.++.++.|.
T Consensus 89 ~E~~~Av~~GAdEIDmVi-nig~l~~g~~-------~~v~~ei~~v~~a~~~~g~~lKvIlEt~~----L~d~e~i~~a~ 156 (260)
T 1p1x_A 89 AETRAAIAYGADEVDVVF-PYRALMAGNE-------QVGFDLVKACKEACAAANVLLKVIIETGE----LKDEALIRKAS 156 (260)
T ss_dssp HHHHHHHHHTCSEEEEEC-CHHHHHTTCC-------HHHHHHHHHHHHHHHHTTCEEEEECCHHH----HCSHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEec-cHHhhhCCCH-------HHHHHHHHHHHHHhcccCCeEEEEEeccc----CCcHHHHHHHH
Confidence 45666678899877 333 3333333333 455556666666553 221 2444433 24466677778
Q ss_pred HHHHHhCCCEEEeC
Q 026125 178 RILKEGGMDAIKLE 191 (243)
Q Consensus 178 Rl~keaGAdaVKLE 191 (243)
|+..++|||-||..
T Consensus 157 ~ia~eaGADfVKTS 170 (260)
T 1p1x_A 157 EISIKAGADFIKTS 170 (260)
T ss_dssp HHHHHTTCSEEECC
T ss_pred HHHHHhCCCEEEeC
Confidence 88889999999998
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=88.08 E-value=3.1 Score=37.25 Aligned_cols=120 Identities=15% Similarity=0.115 Sum_probs=72.0
Q ss_pred CCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CC-cEE------eeCC
Q 026125 90 NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RP-LLV------GDLP 161 (243)
Q Consensus 90 ~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~-fvV------aDmP 161 (243)
.+.++.++. .+..-...+-++|+|.|-+-++..-. +-.. -...|.+|.+..++.+.+.+. .- .+. .+-|
T Consensus 73 ~~~~~~~l~-~~~~~i~~a~~~g~~~v~i~~~~sd~-~~~~-~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~ 149 (307)
T 1ydo_A 73 KGVTYAALV-PNQRGLENALEGGINEACVFMSASET-HNRK-NINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCP 149 (307)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHTCSEEEEEEESSHH-HHHT-TTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBT
T ss_pred CCCeEEEEe-CCHHhHHHHHhCCcCEEEEEeecCHH-HHHH-HhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCC
Confidence 355777776 46667777888999998766555321 0001 123466666555444433221 11 121 3446
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc--CCceeec
Q 026125 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA--GIAVMGH 214 (243)
Q Consensus 162 fgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~--GIPV~GH 214 (243)
|.+- .+++..++.+.++. +.||+.|.|-|-.. ....++++|.+. ++|+--|
T Consensus 150 ~~~~-~~~~~~~~~~~~~~-~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H 207 (307)
T 1ydo_A 150 YEKD-VPIEQVIRLSEALF-EFGISELSLGDTIGAANPAQVETVLEALLARFPANQIALH 207 (307)
T ss_dssp TTBC-CCHHHHHHHHHHHH-HHTCSCEEEECSSCCCCHHHHHHHHHHHHTTSCGGGEEEE
T ss_pred cCCC-CCHHHHHHHHHHHH-hcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 6554 68899988887776 68999999987632 244556666654 4666666
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=88.03 E-value=4.3 Score=37.67 Aligned_cols=90 Identities=16% Similarity=0.125 Sum_probs=60.4
Q ss_pred HHHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 104 sA~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
.|+-+.++|++.+= +|+ ++++-+..+++|+++. +..-|..|.- ++| +.+++++.+.+ +
T Consensus 192 ~a~~~~~~Gf~~vKik~g~---------------~~~~d~e~v~avR~avG~d~~l~vDan-~~~--~~~eai~~~~~-L 252 (428)
T 3bjs_A 192 EAQEYIARGYKALKLRIGD---------------AARVDIERVRHVRKVLGDEVDILTDAN-TAY--TMADARRVLPV-L 252 (428)
T ss_dssp HHHHHHHHTCSEEEEECCS---------------CHHHHHHHHHHHHHHHCTTSEEEEECT-TCC--CHHHHHHHHHH-H
T ss_pred HHHHHHHCCCCEEEECCCC---------------CHHHHHHHHHHHHHhcCCCCEEEEECC-CCC--CHHHHHHHHHH-H
Confidence 34445577999984 453 4677788999999976 3455678874 577 78999998765 5
Q ss_pred HHhCCCEEEeCCCCC-chHHHHHHHHHc-C-Cceeec
Q 026125 181 KEGGMDAIKLEGGSP-SRITAARGIVEA-G-IAVMGH 214 (243)
Q Consensus 181 keaGAdaVKLEGg~~-~~~~~i~~L~~~-G-IPV~GH 214 (243)
++.|.+- +|.... ....-.+.|.+. + |||++-
T Consensus 253 ~~~~i~~--iEqP~~~~d~~~~~~l~~~~~~iPIa~d 287 (428)
T 3bjs_A 253 AEIQAGW--LEEPFACNDFASYREVAKITPLVPIAAG 287 (428)
T ss_dssp HHTTCSC--EECCSCTTCHHHHHHHTTTCSSSCEEEC
T ss_pred HhcCCCE--EECCCCccCHHHHHHHHHhCCCCcEEcC
Confidence 5677764 676532 112234556653 6 999875
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=88.02 E-value=2.8 Score=37.43 Aligned_cols=82 Identities=20% Similarity=0.215 Sum_probs=50.7
Q ss_pred hCCCcEEEEecCCHHHHHHHHHcCCCEEEe-CcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcC
Q 026125 89 KNGEPITMVTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYES 167 (243)
Q Consensus 89 k~g~~ItmlTAYD~~sA~iae~AGiDiILV-GDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~ 167 (243)
+.+-| +++.+.+...|+.++++|+|.|.+ |-.. -|+.. ...++ ...+.|++..+.| |+++= +. .
T Consensus 108 ~~g~~-v~~~v~~~~~a~~~~~~GaD~i~v~g~~~----GG~~g-~~~~~----~ll~~i~~~~~iP-ViaaG---GI-~ 172 (332)
T 2z6i_A 108 EAGII-VIPVVPSVALAKRMEKIGADAVIAEGMEA----GGHIG-KLTTM----TLVRQVATAISIP-VIAAG---GI-A 172 (332)
T ss_dssp HTTCE-EEEEESSHHHHHHHHHTTCSCEEEECTTS----SEECC-SSCHH----HHHHHHHHHCSSC-EEEES---SC-C
T ss_pred HcCCe-EEEEeCCHHHHHHHHHcCCCEEEEECCCC----CCCCC-CccHH----HHHHHHHHhcCCC-EEEEC---CC-C
Confidence 34544 446778888999999999999877 4211 23322 12223 3445666666677 45553 44 3
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEe
Q 026125 168 STNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 168 s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
+++++ .+.+. .|||+|-+
T Consensus 173 ~~~~~----~~al~-~GAdgV~v 190 (332)
T 2z6i_A 173 DGEGA----AAGFM-LGAEAVQV 190 (332)
T ss_dssp SHHHH----HHHHH-TTCSEEEE
T ss_pred CHHHH----HHHHH-cCCCEEEe
Confidence 56665 45563 79999987
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=87.99 E-value=5.9 Score=35.18 Aligned_cols=105 Identities=24% Similarity=0.219 Sum_probs=65.7
Q ss_pred HHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 026125 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (243)
Q Consensus 108 ae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAd 186 (243)
.-+.|+|-|++..|-|=. -.+|.||-..-.+.+++.+ ++..|++.. |+ .|.+++++.+...- +.|||
T Consensus 41 li~~Gv~Gl~v~GtTGE~-------~~Ls~eEr~~v~~~~~~~~~grvpViaGv--g~--~~t~~ai~la~~A~-~~Gad 108 (303)
T 2wkj_A 41 NIQQGIDGLYVGGSTGEA-------FVQSLSEREQVLEIVAEEAKGKIKLIAHV--GC--VSTAESQQLAASAK-RYGFD 108 (303)
T ss_dssp HHHTTCSEEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHTTTSEEEEEC--CC--SSHHHHHHHHHHHH-HHTCS
T ss_pred HHHcCCCEEEECeeccCh-------hhCCHHHHHHHHHHHHHHhCCCCcEEEec--CC--CCHHHHHHHHHHHH-hCCCC
Confidence 346799999876555432 2578888777777776654 344577764 23 37899999886654 69999
Q ss_pred EEEeCCC------CCchHHHHHHHHHc-C-Cceee-------ccCCccccccc
Q 026125 187 AIKLEGG------SPSRITAARGIVEA-G-IAVMG-------HVGLTPQAISV 224 (243)
Q Consensus 187 aVKLEGg------~~~~~~~i~~L~~~-G-IPV~G-------HiGLtPQ~~~~ 224 (243)
++-+--- .+....-.+++.++ + +||+= .+-|.|.....
T Consensus 109 avlv~~P~y~~~s~~~l~~~f~~va~a~~~lPiilYn~P~~tg~~l~~~~~~~ 161 (303)
T 2wkj_A 109 AVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINT 161 (303)
T ss_dssp EEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCEEEEECHHHHCCCCCHHHHHH
T ss_pred EEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCEEEEeCccccCCCCCHHHHHH
Confidence 9976332 11222334556664 4 88874 33456655443
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=87.95 E-value=6.1 Score=34.73 Aligned_cols=106 Identities=16% Similarity=0.156 Sum_probs=65.7
Q ss_pred HHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 026125 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (243)
Q Consensus 108 ae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAd 186 (243)
.-++|+|-|++..|-|=. -.+|.||-..-.+.+++.++ +..|++... + .|.+++++.+...- +.|||
T Consensus 30 li~~Gv~gl~~~GttGE~-------~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg--~--~~t~~ai~la~~a~-~~Gad 97 (289)
T 2yxg_A 30 LIENGVSGIVAVGTTGES-------PTLSHEEHKKVIEKVVDVVNGRVQVIAGAG--S--NCTEEAIELSVFAE-DVGAD 97 (289)
T ss_dssp HHHTTCSEEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHTTSSEEEEECC--C--SSHHHHHHHHHHHH-HHTCS
T ss_pred HHHCCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCCCCcEEEeCC--C--CCHHHHHHHHHHHH-hcCCC
Confidence 346799998776555432 24788887777777666443 445676653 3 37899999886654 69999
Q ss_pred EEEeCCCC------CchHHHHHHHHH-cCCceee-------ccCCcccccccc
Q 026125 187 AIKLEGGS------PSRITAARGIVE-AGIAVMG-------HVGLTPQAISVL 225 (243)
Q Consensus 187 aVKLEGg~------~~~~~~i~~L~~-~GIPV~G-------HiGLtPQ~~~~~ 225 (243)
++-+---. +....-.+++.+ .++||+= ++-|.|.....+
T Consensus 98 avlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~L 150 (289)
T 2yxg_A 98 AVLSITPYYNKPTQEGLRKHFGKVAESINLPIVLYNVPSRTAVNLEPKTVKLL 150 (289)
T ss_dssp EEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHH
Confidence 99764321 112223455665 4788874 344566554433
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=87.93 E-value=2.4 Score=41.82 Aligned_cols=97 Identities=18% Similarity=0.254 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHH
Q 026125 100 YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 100 YD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl 179 (243)
.|...|...-+||+|+|.+-- .+|+. +-++...+.|+.--|...||+. .- .+.|.+ ..|
T Consensus 281 d~~eR~~aLv~AGvD~iviD~-----ahGhs-------~~v~~~i~~ik~~~p~~~viaG----NV-aT~e~a----~~L 339 (556)
T 4af0_A 281 GDKDRLKLLAEAGLDVVVLDS-----SQGNS-------VYQIEFIKWIKQTYPKIDVIAG----NV-VTREQA----AQL 339 (556)
T ss_dssp HHHHHHHHHHHTTCCEEEECC-----SCCCS-------HHHHHHHHHHHHHCTTSEEEEE----EE-CSHHHH----HHH
T ss_pred cHHHHHHHHHhcCCcEEEEec-----ccccc-------HHHHHHHHHHHhhCCcceEEec----cc-cCHHHH----HHH
Confidence 566778888899999998741 23432 3456777788877777666653 23 466666 456
Q ss_pred HHHhCCCEEEeCCCCCc-----------------hHHHHHHHHHcCCceeeccCCc
Q 026125 180 LKEGGMDAIKLEGGSPS-----------------RITAARGIVEAGIAVMGHVGLT 218 (243)
Q Consensus 180 ~keaGAdaVKLEGg~~~-----------------~~~~i~~L~~~GIPV~GHiGLt 218 (243)
+ ++|||+||+==|... +.++.++..+.||||++-=|+.
T Consensus 340 i-~aGAD~vkVGiGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~~~vpvIADGGI~ 394 (556)
T 4af0_A 340 I-AAGADGLRIGMGSGSICITQEVMAVGRPQGTAVYAVAEFASRFGIPCIADGGIG 394 (556)
T ss_dssp H-HHTCSEEEECSSCSTTBCCTTTCCSCCCHHHHHHHHHHHHGGGTCCEEEESCCC
T ss_pred H-HcCCCEEeecCCCCcccccccccCCCCcHHHHHHHHHHHHHHcCCCEEecCCcC
Confidence 6 699999997433211 1233455567799999865554
|
| >2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2, ACMDS, ACMS, trypto metabolism, quinolinic acid, QUIN; 2.50A {Lactobacillus plantarum} SCOP: c.1.9.15 | Back alignment and structure |
|---|
Probab=87.85 E-value=1.8 Score=36.75 Aligned_cols=69 Identities=19% Similarity=0.147 Sum_probs=47.2
Q ss_pred HHcccCCCcEE-eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC-------CCchHHHHHHHHHcCCceeeccCCc
Q 026125 147 VARGAKRPLLV-GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG-------SPSRITAARGIVEAGIAVMGHVGLT 218 (243)
Q Consensus 147 V~Rga~~~fvV-aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg-------~~~~~~~i~~L~~~GIPV~GHiGLt 218 (243)
+++.-+.-|.. +-.|. .+++++++...|++++.|+.+|++--. .+....+.+.+.+.|+||+=|.|-.
T Consensus 83 ~~~~~p~r~~~~~~~p~----~~~~~~~~el~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~a~~~~lpv~iH~~~~ 158 (307)
T 2f6k_A 83 LAQQYPDQLGYLASLPI----PYELDAVKTVQQALDQDGALGVTVPTNSRGLYFGSPVLERVYQELDARQAIVALHPNEP 158 (307)
T ss_dssp HHHHCTTTEEEEECCCT----TCHHHHHHHHHHHHHTSCCSEEEEESEETTEETTCGGGHHHHHHHHTTTCEEEEECCCC
T ss_pred HHHhCccceeEEEeCCC----CCHHHHHHHHHHHHhccCCcEEEEeccCCCCCCCcHhHHHHHHHHHHcCCeEEECCCCC
Confidence 44445554433 55553 145778877788887789999988432 2334567888999999999999864
Q ss_pred c
Q 026125 219 P 219 (243)
Q Consensus 219 P 219 (243)
+
T Consensus 159 ~ 159 (307)
T 2f6k_A 159 A 159 (307)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=87.83 E-value=1 Score=40.96 Aligned_cols=108 Identities=8% Similarity=0.047 Sum_probs=66.2
Q ss_pred CCCcEEEEecC------CHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC-
Q 026125 90 NGEPITMVTAY------DYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF- 162 (243)
Q Consensus 90 ~g~~ItmlTAY------D~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf- 162 (243)
.+.+++++.-. |.-.+..+.++|+|.+.+-|++- -++++...++.+++.- .. +.+.+-+
T Consensus 72 ~~~~~~~L~r~~~~~~~dv~~~~~a~~~Gvd~~ri~~~~~------------nle~~~~~v~~ak~~G-~~-v~~~~~~~ 137 (320)
T 3dxi_A 72 STKKIAIMLNEKNTTPEDLNHLLLPIIGLVDMIRIAIDPQ------------NIDRAIVLAKAIKTMG-FE-VGFNVMYM 137 (320)
T ss_dssp CCSEEEEEEEGGGCCGGGHHHHHGGGTTTCSEEEEEECGG------------GHHHHHHHHHHHHTTT-CE-EEEEECCT
T ss_pred cCCeEEEEecCCCCChhhHHHHHHhhhcCCCEEEEEecHH------------HHHHHHHHHHHHHHCC-CE-EEEEEEeC
Confidence 66789998643 45555555669999998887653 2788888777766532 22 3344332
Q ss_pred CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc-CCceeec
Q 026125 163 GTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 163 gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~-GIPV~GH 214 (243)
..|. +++..++.+.+ + +.||+.|.|-|-.. ....++++|.+. ++|+--|
T Consensus 138 ~~~~-~~~~~l~~~~~-~-~~G~~~i~l~Dt~G~~~P~~~~~lv~~l~~~~~~~i~~H 192 (320)
T 3dxi_A 138 SKWA-EMNGFLSKLKA-I-DKIADLFCMVDSFGGITPKEVKNLLKEVRKYTHVPVGFH 192 (320)
T ss_dssp TTGG-GSTTSGGGGGG-G-TTTCSEEEEECTTSCCCHHHHHHHHHHHHHHCCSCEEEE
T ss_pred CCCC-CHHHHHHHHHH-h-hCCCCEEEECcccCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 2332 33344444444 4 57999999988632 234455666553 6788777
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=87.82 E-value=14 Score=32.83 Aligned_cols=112 Identities=21% Similarity=0.255 Sum_probs=70.8
Q ss_pred EEEEecCCHHHHHHHHHcCCCEE-EeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCC-CCCCcCC--H
Q 026125 94 ITMVTAYDYPSAVHLDSAGIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP-FGTYESS--T 169 (243)
Q Consensus 94 ItmlTAYD~~sA~iae~AGiDiI-LVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmP-fgsY~~s--~ 169 (243)
+.-++++++.+|..|+++|.|=| |+.+ ++ .| .+--++..| +.+++..+.|+.+-==| .|+|--| .
T Consensus 3 ~lEvc~~s~~~a~~A~~~GAdRIELc~~-L~---~G---GlTPS~g~i----~~~~~~~~ipv~vMIRPR~GdF~Ys~~E 71 (256)
T 1twd_A 3 LLEICCYSMECALTAQQNGADRVELCAA-PK---EG---GLTPSLGVL----KSVRQRVTIPVHPIIRPRGGDFCYSDGE 71 (256)
T ss_dssp EEEEEESSHHHHHHHHHTTCSEEEECBC-GG---GT---CBCCCHHHH----HHHHHHCCSCEEEBCCSSSSCSCCCHHH
T ss_pred eEEEEeCCHHHHHHHHHcCCCEEEEcCC-cc---cC---CCCCCHHHH----HHHHHHcCCceEEEECCCCCCCcCCHHH
Confidence 35689999999999999999987 8863 21 11 222344443 33455666775442224 3333334 3
Q ss_pred HHHHHHHHHHHHHhCCCEEEe----CCCCCchHHHHHHHHH--cCCceeeccCC
Q 026125 170 NQAVDTAVRILKEGGMDAIKL----EGGSPSRITAARGIVE--AGIAVMGHVGL 217 (243)
Q Consensus 170 e~Av~nA~Rl~keaGAdaVKL----EGg~~~~~~~i~~L~~--~GIPV~GHiGL 217 (243)
-+++..-++.+++.|||+|-+ ++|.- -.+..+.|++ .|.||.=|=-+
T Consensus 72 ~~~M~~Di~~~~~~GadGvV~G~Lt~dg~i-D~~~~~~Li~~a~~~~vTFHRAf 124 (256)
T 1twd_A 72 FAAILEDVRTVRELGFPGLVTGVLDVDGNV-DMPRMEKIMAAAGPLAVTFHRAF 124 (256)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCBCTTSSB-CHHHHHHHHHHHTTSEEEECGGG
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeECCCCCc-CHHHHHHHHHHhCCCcEEEECch
Confidence 467888889999999999986 55542 2333566654 37777766443
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=87.77 E-value=6.7 Score=33.58 Aligned_cols=103 Identities=11% Similarity=0.128 Sum_probs=63.1
Q ss_pred HHHHHhhhCCCcEEEEecCCHH----HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 82 THLRQKHKNGEPITMVTAYDYP----SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 82 ~~Lr~~kk~g~~ItmlTAYD~~----sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
.++.+..++...+.++...|.. .+..+-++|++++-+...- + ...| ..+.+++..+..++-
T Consensus 8 ~~~~~~l~~~~ii~vir~~~~~~~~~~~~al~~gGv~~iel~~k~-----------~-~~~~---~i~~l~~~~~~l~vg 72 (224)
T 1vhc_A 8 QQIIEKLRELKIVPVIALDNADDILPLADTLAKNGLSVAEITFRS-----------E-AAAD---AIRLLRANRPDFLIA 72 (224)
T ss_dssp HHHHHHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTS-----------T-THHH---HHHHHHHHCTTCEEE
T ss_pred HHHHHHHHHCCeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEeccC-----------c-hHHH---HHHHHHHhCcCcEEe
Confidence 3343433444567777777776 4566667899999776321 1 1223 335566666666566
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCcee
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVM 212 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~ 212 (243)
++..+ +.+++ ++..++|||.|..-+. ...+++...+.|+|++
T Consensus 73 aGtvl-----~~d~~-----~~A~~aGAd~v~~p~~---d~~v~~~ar~~g~~~i 114 (224)
T 1vhc_A 73 AGTVL-----TAEQV-----VLAKSSGADFVVTPGL---NPKIVKLCQDLNFPIT 114 (224)
T ss_dssp EESCC-----SHHHH-----HHHHHHTCSEEECSSC---CHHHHHHHHHTTCCEE
T ss_pred eCcEe-----eHHHH-----HHHHHCCCCEEEECCC---CHHHHHHHHHhCCCEE
Confidence 88755 33554 3334689999977533 2455677778898864
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=87.73 E-value=5.9 Score=34.90 Aligned_cols=105 Identities=17% Similarity=0.139 Sum_probs=65.5
Q ss_pred HHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCE
Q 026125 109 DSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDA 187 (243)
Q Consensus 109 e~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAda 187 (243)
-+.|+|-|++..|-|=. ..+|.||-..-.+.+++.+. +..|++... + .|.+++++.+.... +.|||+
T Consensus 31 i~~Gv~gl~~~GttGE~-------~~Ls~~Er~~v~~~~~~~~~grvpviaGvg--~--~~t~~ai~la~~A~-~~Gada 98 (294)
T 2ehh_A 31 VDNGTDAILVCGTTGES-------PTLTFEEHEKVIEFAVKRAAGRIKVIAGTG--G--NATHEAVHLTAHAK-EVGADG 98 (294)
T ss_dssp HTTTCCEEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHTTSSEEEEECC--C--SCHHHHHHHHHHHH-HTTCSE
T ss_pred HHCCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCCCCcEEEecC--C--CCHHHHHHHHHHHH-hcCCCE
Confidence 36799998776555332 24788887777777766443 444676653 3 47899999887655 699999
Q ss_pred EEeCCCC------CchHHHHHHHHH-cCCceee-------ccCCcccccccc
Q 026125 188 IKLEGGS------PSRITAARGIVE-AGIAVMG-------HVGLTPQAISVL 225 (243)
Q Consensus 188 VKLEGg~------~~~~~~i~~L~~-~GIPV~G-------HiGLtPQ~~~~~ 225 (243)
+-+---. +....-.+++.+ .++||+= ++-|.|.....+
T Consensus 99 vlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L 150 (294)
T 2ehh_A 99 ALVVVPYYNKPTQRGLYEHFKTVAQEVDIPIIIYNIPSRTCVEISVDTMFKL 150 (294)
T ss_dssp EEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHHH
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCcCCCHHHHHHH
Confidence 9764321 112223345665 4788874 345666655443
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=87.68 E-value=7.1 Score=34.38 Aligned_cols=105 Identities=20% Similarity=0.179 Sum_probs=65.2
Q ss_pred HH-cCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 026125 109 DS-AGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (243)
Q Consensus 109 e~-AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAd 186 (243)
-+ .|+|-|++..|-|=. -.+|.||-..-.+.+++.++ +..|++.. |+ .|.+++++.+...- +.|||
T Consensus 34 i~~~Gv~gl~~~GttGE~-------~~Ls~~Er~~v~~~~~~~~~grvpviaGv--g~--~~t~~ai~la~~a~-~~Gad 101 (293)
T 1f6k_A 34 IDKMKVDGLYVGGSTGEN-------FMLSTEEKKEIFRIAKDEAKDQIALIAQV--GS--VNLKEAVELGKYAT-ELGYD 101 (293)
T ss_dssp HHTSCCSEEEESSGGGTG-------GGSCHHHHHHHHHHHHHHHTTSSEEEEEC--CC--SCHHHHHHHHHHHH-HHTCS
T ss_pred HhhCCCcEEEeCccccch-------hhCCHHHHHHHHHHHHHHhCCCCeEEEec--CC--CCHHHHHHHHHHHH-hcCCC
Confidence 35 899999876565432 24788887777777766443 44467665 23 37899999886654 79999
Q ss_pred EEEeCCC------CCchHHHHHHHHHc-CCceee-------ccCCcccccccc
Q 026125 187 AIKLEGG------SPSRITAARGIVEA-GIAVMG-------HVGLTPQAISVL 225 (243)
Q Consensus 187 aVKLEGg------~~~~~~~i~~L~~~-GIPV~G-------HiGLtPQ~~~~~ 225 (243)
++-+--- .+....-.+.+.++ ++||+= ++-|.|.....+
T Consensus 102 avlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L 154 (293)
T 1f6k_A 102 CLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMIVYSIPFLTGVNMGIEQFGEL 154 (293)
T ss_dssp EEEEECCCSSCCCHHHHHHHHHHHHHHHCCCEEEEECHHHHCCCCCHHHHHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEECccccCcCCCHHHHHHH
Confidence 9976322 11122234556654 678763 345666655443
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=87.67 E-value=2 Score=35.84 Aligned_cols=80 Identities=14% Similarity=0.184 Sum_probs=51.1
Q ss_pred CcEEEEecCCHHHHHHHHHcCCCEE--EeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCH
Q 026125 92 EPITMVTAYDYPSAVHLDSAGIDIC--LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESST 169 (243)
Q Consensus 92 ~~ItmlTAYD~~sA~iae~AGiDiI--LVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~ 169 (243)
...+++.+.+...|..+.++|+|+| .+..... |...+.+..++ ..+.+++. +.| ++++= +- .|+
T Consensus 133 ~~~v~~~~~t~~ea~~a~~~Gad~i~~~v~g~~~----~~~~~~~~~~~----~i~~~~~~-~ip-via~G---GI-~s~ 198 (234)
T 1yxy_A 133 NQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTP----YSRQEAGPDVA----LIEALCKA-GIA-VIAEG---KI-HSP 198 (234)
T ss_dssp TCEEEEECSSHHHHHHHHHTTCSEEECTTTTSST----TSCCSSSCCHH----HHHHHHHT-TCC-EEEES---CC-CSH
T ss_pred CCeEEEeCCCHHHHHHHHHcCCCEEeeeccccCC----CCcCCCCCCHH----HHHHHHhC-CCC-EEEEC---CC-CCH
Confidence 5668889999999999999999999 4332111 11112334443 34556655 455 66663 44 357
Q ss_pred HHHHHHHHHHHHHhCCCEEEe
Q 026125 170 NQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 170 e~Av~nA~Rl~keaGAdaVKL 190 (243)
+++ .+++ ++|||+|-+
T Consensus 199 ~~~----~~~~-~~Gad~v~v 214 (234)
T 1yxy_A 199 EEA----KKIN-DLGVAGIVV 214 (234)
T ss_dssp HHH----HHHH-TTCCSEEEE
T ss_pred HHH----HHHH-HCCCCEEEE
Confidence 776 5566 589999987
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=87.33 E-value=6.6 Score=34.67 Aligned_cols=94 Identities=13% Similarity=0.061 Sum_probs=61.8
Q ss_pred HHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 026125 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (243)
Q Consensus 108 ae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAd 186 (243)
.-+.|+|-|++..|-|=. -.+|.||-..-.+.+++.+. +..|++... + .|.+++++.+...- +.|||
T Consensus 33 li~~Gv~gl~~~GttGE~-------~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg--~--~~t~~ai~la~~A~-~~Gad 100 (294)
T 3b4u_A 33 CLSNGCDSVTLFGTTGEG-------CSVGSRERQAILSSFIAAGIAPSRIVTGVL--V--DSIEDAADQSAEAL-NAGAR 100 (294)
T ss_dssp HHHTTCSEEEESSTTTTG-------GGSCHHHHHHHHHHHHHTTCCGGGEEEEEC--C--SSHHHHHHHHHHHH-HTTCS
T ss_pred HHHcCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCCCCcEEEeCC--C--ccHHHHHHHHHHHH-hcCCC
Confidence 446799998776554331 24789998888888776654 444666643 2 37899999886654 69999
Q ss_pred EEEeCCC-------CCchHHHHHHHHHc----CCceee
Q 026125 187 AIKLEGG-------SPSRITAARGIVEA----GIAVMG 213 (243)
Q Consensus 187 aVKLEGg-------~~~~~~~i~~L~~~----GIPV~G 213 (243)
++-+--- .+....-.+++.++ ++||+=
T Consensus 101 avlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPiil 138 (294)
T 3b4u_A 101 NILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILV 138 (294)
T ss_dssp EEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEE
T ss_pred EEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 9976422 11223334566776 799874
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=87.23 E-value=2.8 Score=35.10 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=44.0
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHh
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~kea 183 (243)
.|+.++++|+|.|-+-|--+. .......+...+.+++..+.|+++.+ .. .+++++ .+++ +.
T Consensus 35 ~a~~~~~~Gad~i~v~d~~~~---------~~~~~~~~~~i~~i~~~~~ipvi~~g----gI-~~~~~~----~~~~-~~ 95 (253)
T 1thf_D 35 LGKFYSEIGIDELVFLDITAS---------VEKRKTMLELVEKVAEQIDIPFTVGG----GI-HDFETA----SELI-LR 95 (253)
T ss_dssp HHHHHHHTTCCEEEEEESSCS---------SSHHHHHHHHHHHHHTTCCSCEEEES----SC-CSHHHH----HHHH-HT
T ss_pred HHHHHHHcCCCEEEEECCchh---------hcCCcccHHHHHHHHHhCCCCEEEeC----CC-CCHHHH----HHHH-Hc
Confidence 478889999999854442211 01223446667888888888865533 34 467775 4455 57
Q ss_pred CCCEEEeC
Q 026125 184 GMDAIKLE 191 (243)
Q Consensus 184 GAdaVKLE 191 (243)
|||+|.+-
T Consensus 96 Gad~V~lg 103 (253)
T 1thf_D 96 GADKVSIN 103 (253)
T ss_dssp TCSEEEES
T ss_pred CCCEEEEC
Confidence 99999883
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=87.20 E-value=5.1 Score=34.97 Aligned_cols=89 Identities=15% Similarity=0.138 Sum_probs=52.2
Q ss_pred CCcEEEEecC--CHH----HHHHHHHcCCCEEEeCcch--hhhh---------------ccCCCCccCCHHHHHHHHHHH
Q 026125 91 GEPITMVTAY--DYP----SAVHLDSAGIDICLVGDSA--AMVV---------------HGHDTTLPITLEEMLVHCRAV 147 (243)
Q Consensus 91 g~~ItmlTAY--D~~----sA~iae~AGiDiILVGDSl--gmv~---------------lG~~dT~~vTldeMi~h~~aV 147 (243)
+.|+.+=... |.. .|+.++++|+|.|.+-+.. ++.. -|+.. +-....-+..++.|
T Consensus 158 ~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg--~~~~~~~~~~i~~v 235 (311)
T 1jub_A 158 TKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGG--AYIKPTALANVRAF 235 (311)
T ss_dssp CSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEES--GGGHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCcccc--ccccHHHHHHHHHH
Confidence 4576653333 322 2889999999999766543 1111 12211 11112235567788
Q ss_pred Hccc--CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 148 ARGA--KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 148 ~Rga--~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
++.. +.| |++.= +. .|.+++ .+++ ++|||+|.+=
T Consensus 236 ~~~~~~~ip-vi~~G---GI-~~~~da----~~~l-~~GAd~V~vg 271 (311)
T 1jub_A 236 YTRLKPEIQ-IIGTG---GI-ETGQDA----FEHL-LCGATMLQIG 271 (311)
T ss_dssp HTTSCTTSE-EEEES---SC-CSHHHH----HHHH-HHTCSEEEEC
T ss_pred HHhcCCCCC-EEEEC---CC-CCHHHH----HHHH-HcCCCEEEEc
Confidence 8887 455 66663 44 378888 5666 4799999884
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=87.10 E-value=4.4 Score=35.32 Aligned_cols=65 Identities=15% Similarity=0.137 Sum_probs=44.8
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCC-CcEEeeCCCCCCc-CCHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR-PLLVGDLPFGTYE-SSTNQAVDTAVRILK 181 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~-~fvVaDmPfgsY~-~s~e~Av~nA~Rl~k 181 (243)
.++++.++|.|.|-+|.. .++|.|- .+++.++. |.+... +-. .+.+++++++...+
T Consensus 164 a~~~a~~~GAD~vkt~~~-------------~~~e~~~----~~~~~~~~~pV~asG----Gi~~~~~~~~l~~i~~~~- 221 (263)
T 1w8s_A 164 AARIALELGADAMKIKYT-------------GDPKTFS----WAVKVAGKVPVLMSG----GPKTKTEEDFLKQVEGVL- 221 (263)
T ss_dssp HHHHHHHHTCSEEEEECC-------------SSHHHHH----HHHHHTTTSCEEEEC----CSCCSSHHHHHHHHHHHH-
T ss_pred HHHHHHHcCCCEEEEcCC-------------CCHHHHH----HHHHhCCCCeEEEEe----CCCCCCHHHHHHHHHHHH-
Confidence 468899999999988832 2555543 45555566 744432 222 27899999998888
Q ss_pred HhCCCEEEe
Q 026125 182 EGGMDAIKL 190 (243)
Q Consensus 182 eaGAdaVKL 190 (243)
++||+++-.
T Consensus 222 ~aGA~Gvsv 230 (263)
T 1w8s_A 222 EAGALGIAV 230 (263)
T ss_dssp HTTCCEEEE
T ss_pred HcCCeEEEE
Confidence 599998754
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=87.01 E-value=4.3 Score=36.96 Aligned_cols=129 Identities=17% Similarity=0.220 Sum_probs=72.2
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCH-HHHHHHHHcCCCEE-EeC---cchhhhhc----cCCCCccCCHHH----HHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDY-PSAVHLDSAGIDIC-LVG---DSAAMVVH----GHDTTLPITLEE----MLVH 143 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~-~sA~iae~AGiDiI-LVG---DSlgmv~l----G~~dT~~vTlde----Mi~h 143 (243)
+.+|..++.+..+ || ..|+.|.+||||.| +=+ .-+....- -..|.-.-+++. .++-
T Consensus 146 ~~mt~~eI~~ii~-----------~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~ei 214 (363)
T 3l5l_A 146 REMTLDDIARVKQ-----------DFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLET 214 (363)
T ss_dssp EECCHHHHHHHHH-----------HHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHH-----------HHHHHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHH
Confidence 5689999988754 23 35778889999999 422 11110000 011222234553 4677
Q ss_pred HHHHHcccCCCc-EEeeCC---CCCCc-CCHHHHHHHHHHHHHHhCCCEEEeCCCC-----------CchHHHHHHHHH-
Q 026125 144 CRAVARGAKRPL-LVGDLP---FGTYE-SSTNQAVDTAVRILKEGGMDAIKLEGGS-----------PSRITAARGIVE- 206 (243)
Q Consensus 144 ~~aV~Rga~~~f-vVaDmP---fgsY~-~s~e~Av~nA~Rl~keaGAdaVKLEGg~-----------~~~~~~i~~L~~- 206 (243)
+++|++..+.-| |..-+. |..-+ .+.+++++.|.++. +.|+|.|.+-+|. ......++.+.+
T Consensus 215 v~aVr~avg~d~pV~vRis~~~~~~~G~~~~~~~~~la~~L~-~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~ 293 (363)
T 3l5l_A 215 LAAVREVWPENLPLTARFGVLEYDGRDEQTLEESIELARRFK-AGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRRE 293 (363)
T ss_dssp HHHHHTTSCTTSCEEEEEEEECSSSCHHHHHHHHHHHHHHHH-HTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHH
T ss_pred HHHHHHHcCCCceEEEEecchhcCCCCCCCHHHHHHHHHHHH-HcCCCEEEEecCccccccccCCCcchhHHHHHHHHHH
Confidence 889998886433 333321 21101 25678887776655 6899999987541 111233344433
Q ss_pred cCCceeeccCC
Q 026125 207 AGIAVMGHVGL 217 (243)
Q Consensus 207 ~GIPV~GHiGL 217 (243)
-+|||++==|+
T Consensus 294 ~~iPVi~~GgI 304 (363)
T 3l5l_A 294 AKLPVTSAWGF 304 (363)
T ss_dssp HTCCEEECSST
T ss_pred cCCcEEEeCCC
Confidence 27999975444
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=86.95 E-value=3.6 Score=37.40 Aligned_cols=91 Identities=7% Similarity=-0.031 Sum_probs=59.5
Q ss_pred HHHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 104 sA~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
.|+-+.++|+|.+= +|+ + .+++ +..+++|+++.+ ...|..|.. ++| +.+++++.+.+ +
T Consensus 171 ~a~~~~~~Gf~~vKik~g~---------~-----~~~~-~e~v~avr~a~g~d~~l~vDan-~~~--~~~~a~~~~~~-l 231 (388)
T 2nql_A 171 LAKYWQDRGFNAFKFATPV---------A-----DDGP-AAEIANLRQVLGPQAKIAADMH-WNQ--TPERALELIAE-M 231 (388)
T ss_dssp HHHHHHHTTCCEEEEEGGG---------C-----TTCH-HHHHHHHHHHHCTTSEEEEECC-SCS--CHHHHHHHHHH-H
T ss_pred HHHHHHHhCCCEEEEeCCC---------C-----ChHH-HHHHHHHHHHhCCCCEEEEECC-CCC--CHHHHHHHHHH-H
Confidence 34555578999984 442 2 2456 788889988763 455678974 577 68999998766 5
Q ss_pred HHhCCCEEEeCCCCC-chHHHHHHHHH-cCCceeecc
Q 026125 181 KEGGMDAIKLEGGSP-SRITAARGIVE-AGIAVMGHV 215 (243)
Q Consensus 181 keaGAdaVKLEGg~~-~~~~~i~~L~~-~GIPV~GHi 215 (243)
++.|.+. +|.... ......+.|.+ .+|||++-=
T Consensus 232 ~~~~i~~--iEqP~~~~d~~~~~~l~~~~~iPI~~dE 266 (388)
T 2nql_A 232 QPFDPWF--AEAPVWTEDIAGLEKVSKNTDVPIAVGE 266 (388)
T ss_dssp GGGCCSC--EECCSCTTCHHHHHHHHTSCCSCEEECT
T ss_pred hhcCCCE--EECCCChhhHHHHHHHHhhCCCCEEEeC
Confidence 5678775 576532 11233456665 389999753
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=86.92 E-value=6.5 Score=34.79 Aligned_cols=105 Identities=18% Similarity=0.150 Sum_probs=65.0
Q ss_pred HHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 026125 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (243)
Q Consensus 108 ae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAd 186 (243)
.-+.|+|-|++..|-|=. -.+|.||-..-.+.+++.++ +..|++... + .|.+++++.+...- +.|||
T Consensus 30 li~~Gv~gi~v~GttGE~-------~~Ls~~Er~~v~~~~~~~~~grvpviaGvg--~--~~t~~ai~la~~A~-~~Gad 97 (297)
T 2rfg_A 30 QIKHGAHGLVPVGTTGES-------PTLTEEEHKRVVALVAEQAQGRVPVIAGAG--S--NNPVEAVRYAQHAQ-QAGAD 97 (297)
T ss_dssp HHHTTCSEEECSSGGGTG-------GGSCHHHHHHHHHHHHHHHTTSSCBEEECC--C--SSHHHHHHHHHHHH-HHTCS
T ss_pred HHHcCCCEEEECccccch-------hhCCHHHHHHHHHHHHHHhCCCCeEEEccC--C--CCHHHHHHHHHHHH-hcCCC
Confidence 346799999876565432 24688887777777666443 344666642 3 37899999886654 69999
Q ss_pred EEEeCCCC------CchHHHHHHHHHc-CCceee-------ccCCccccccc
Q 026125 187 AIKLEGGS------PSRITAARGIVEA-GIAVMG-------HVGLTPQAISV 224 (243)
Q Consensus 187 aVKLEGg~------~~~~~~i~~L~~~-GIPV~G-------HiGLtPQ~~~~ 224 (243)
++-+---. +....-.+++.++ ++||+= ++-|.|.....
T Consensus 98 avlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~ 149 (297)
T 2rfg_A 98 AVLCVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYNIPPRAVVDIKPETMAR 149 (297)
T ss_dssp EEEECCCTTTCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHH
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHH
Confidence 99774331 1122234556654 788873 34455554433
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=86.91 E-value=4.2 Score=35.91 Aligned_cols=91 Identities=19% Similarity=0.157 Sum_probs=51.9
Q ss_pred CCHH-HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHH
Q 026125 100 YDYP-SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVR 178 (243)
Q Consensus 100 YD~~-sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~R 178 (243)
+|+. .|+..+++|+++|-|-+- +--+.--..+.+.|++.++.|++.-| | -.++.+. .
T Consensus 72 ~~p~~~A~~y~~~GA~~isvltd------------~~~f~Gs~~~l~~ir~~v~lPvl~kd--f---iid~~qv-----~ 129 (272)
T 3qja_A 72 ADPAKLAQAYQDGGARIVSVVTE------------QRRFQGSLDDLDAVRASVSIPVLRKD--F---VVQPYQI-----H 129 (272)
T ss_dssp -CHHHHHHHHHHTTCSEEEEECC------------GGGHHHHHHHHHHHHHHCSSCEEEES--C---CCSHHHH-----H
T ss_pred CCHHHHHHHHHHcCCCEEEEecC------------hhhcCCCHHHHHHHHHhCCCCEEECc--c---ccCHHHH-----H
Confidence 4543 788889999999965311 11111123456778888888987776 3 2455554 2
Q ss_pred HHHHhCCCEEEeC--CCC-CchHHHHHHHHHcCCcee
Q 026125 179 ILKEGGMDAIKLE--GGS-PSRITAARGIVEAGIAVM 212 (243)
Q Consensus 179 l~keaGAdaVKLE--Gg~-~~~~~~i~~L~~~GIPV~ 212 (243)
..++.|||+|.|= .-. +....+++...+.|+.++
T Consensus 130 ~A~~~GAD~VlLi~a~l~~~~l~~l~~~a~~lGl~~l 166 (272)
T 3qja_A 130 EARAHGADMLLLIVAALEQSVLVSMLDRTESLGMTAL 166 (272)
T ss_dssp HHHHTTCSEEEEEGGGSCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHcCCCEEEEecccCCHHHHHHHHHHHHHCCCcEE
Confidence 2236899999982 111 122333444445566653
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=86.88 E-value=6.5 Score=35.72 Aligned_cols=105 Identities=17% Similarity=0.158 Sum_probs=65.0
Q ss_pred HHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 026125 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (243)
Q Consensus 108 ae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAd 186 (243)
.-++|+|-|++..|-|=. ..+|.||-..-.+.+++.+. +..|++... + .|.+++++.+.... +.|||
T Consensus 61 li~~Gv~Gl~v~GtTGE~-------~~Ls~eEr~~vi~~~ve~~~grvpViaGvg--~--~st~eai~la~~A~-~~Gad 128 (343)
T 2v9d_A 61 LIKAGVDGLFFLGSGGEF-------SQLGAEERKAIARFAIDHVDRRVPVLIGTG--G--TNARETIELSQHAQ-QAGAD 128 (343)
T ss_dssp HHHTTCSCEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHTTSSCEEEECC--S--SCHHHHHHHHHHHH-HHTCS
T ss_pred HHHcCCCEEEeCccccCh-------hhCCHHHHHHHHHHHHHHhCCCCcEEEecC--C--CCHHHHHHHHHHHH-hcCCC
Confidence 346899988766554331 24788887777777776543 444666643 3 37899999886655 69999
Q ss_pred EEEeCCCC------CchHHHHHHHHHc-CCceee-------ccCCccccccc
Q 026125 187 AIKLEGGS------PSRITAARGIVEA-GIAVMG-------HVGLTPQAISV 224 (243)
Q Consensus 187 aVKLEGg~------~~~~~~i~~L~~~-GIPV~G-------HiGLtPQ~~~~ 224 (243)
+|-+---. +....-.+++.++ ++||+= .+-|.|.....
T Consensus 129 avlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~ 180 (343)
T 2v9d_A 129 GIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKT 180 (343)
T ss_dssp EEEEECCSSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCchhcCcCCCHHHHHH
Confidence 99764321 1122334566664 788874 33455554433
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
Probab=86.82 E-value=6.1 Score=35.10 Aligned_cols=91 Identities=19% Similarity=0.219 Sum_probs=59.4
Q ss_pred HHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 105 A~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ke 182 (243)
|+-+-++|++.+= +|+ ..++-+..+++|+++-+..-+..|.- ++| +.+++++.+.+ +++
T Consensus 147 a~~~~~~Gf~~iKik~g~---------------~~~~d~~~v~avr~~g~~~~l~vDan-~~~--~~~~a~~~~~~-l~~ 207 (345)
T 2zad_A 147 AKKIFEEGFRVIKIKVGE---------------NLKEDIEAVEEIAKVTRGAKYIVDAN-MGY--TQKEAVEFARA-VYQ 207 (345)
T ss_dssp HHHHHHTTCSEEEEECCS---------------CHHHHHHHHHHHHHHSTTCEEEEECT-TCS--CHHHHHHHHHH-HHH
T ss_pred HHHHHHcCcCEEEEeecC---------------CHHHHHHHHHHHHhhCCCCeEEEECC-CCC--CHHHHHHHHHH-HHh
Confidence 3444567999984 453 36666888899988744455668874 577 68999998765 556
Q ss_pred hCCCEEEeCCCCCc-hHHHHHHHHH-cCCceeec
Q 026125 183 GGMDAIKLEGGSPS-RITAARGIVE-AGIAVMGH 214 (243)
Q Consensus 183 aGAdaVKLEGg~~~-~~~~i~~L~~-~GIPV~GH 214 (243)
.|.+...+|..-.. ...-.+.|.+ .+|||++-
T Consensus 208 ~~i~~~~iE~P~~~~~~~~~~~l~~~~~ipia~d 241 (345)
T 2zad_A 208 KGIDIAVYEQPVRREDIEGLKFVRFHSPFPVAAD 241 (345)
T ss_dssp TTCCCSEEECCSCTTCHHHHHHHHHHSSSCEEES
T ss_pred cCCCeeeeeCCCCcccHHHHHHHHHhCCCCEEEe
Confidence 77662257766321 1222455554 48999985
|
| >4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* | Back alignment and structure |
|---|
Probab=86.67 E-value=5.9 Score=36.69 Aligned_cols=133 Identities=15% Similarity=0.123 Sum_probs=78.9
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHH-------HH---HHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYP-------SA---VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRA 146 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~-------sA---~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~a 146 (243)
.+.|..+++ ..|--..++|.||.- .. ...-++|+|-|++..|-|=. ..+|.||-..-.+.
T Consensus 51 ~~~~~~~~~---~~Gi~~alvTPF~~dg~ID~~al~~lv~~li~~Gv~Gl~v~GTTGE~-------~~Ls~eEr~~vi~~ 120 (360)
T 4dpp_A 51 NRTNTDDIK---ALRVITAIKTPYLPDGRFDLEAYDDLVNIQIQNGAEGVIVGGTTGEG-------QLMSWDEHIMLIGH 120 (360)
T ss_dssp ---CHHHHH---TCCEEEECCCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTG-------GGSCHHHHHHHHHH
T ss_pred hccChhhcc---cCCeEEEEeCcCCCCCCcCHHHHHHHHHHHHHcCCCEEEecccccCh-------hhCCHHHHHHHHHH
Confidence 356766664 345555678998642 22 23346899988876555431 25688887766666
Q ss_pred HHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC------CCchHHHHHHHHHcCCceee------
Q 026125 147 VARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG------SPSRITAARGIVEAGIAVMG------ 213 (243)
Q Consensus 147 V~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg------~~~~~~~i~~L~~~GIPV~G------ 213 (243)
+++.+ .+..|++.. |+ .|.+++++.+.... +.|||++-+--- .+....-.+++.++ +||+=
T Consensus 121 ~ve~~~grvpViaGv--g~--~st~eai~la~~A~-~~Gadavlvv~PyY~k~sq~gl~~hf~~IA~a-~PiilYNiP~r 194 (360)
T 4dpp_A 121 TVNCFGGSIKVIGNT--GS--NSTREAIHATEQGF-AVGMHAALHINPYYGKTSIEGLIAHFQSVLHM-GPTIIYNVPGR 194 (360)
T ss_dssp HHHHHTTTSEEEEEC--CC--SSHHHHHHHHHHHH-HTTCSEEEEECCCSSCCCHHHHHHHHHTTGGG-SCEEEEECHHH
T ss_pred HHHHhCCCCeEEEec--CC--CCHHHHHHHHHHHH-HcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh-CCEEEEeCCcc
Confidence 66544 344567654 33 37899999886655 699999987532 11122334566676 68763
Q ss_pred -ccCCcccccccc
Q 026125 214 -HVGLTPQAISVL 225 (243)
Q Consensus 214 -HiGLtPQ~~~~~ 225 (243)
++.|.|.....+
T Consensus 195 Tg~~ls~e~l~~L 207 (360)
T 4dpp_A 195 TGQDIPPRAIFKL 207 (360)
T ss_dssp HSCCCCHHHHHHH
T ss_pred cCCCCCHHHHHHH
Confidence 455555544433
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=86.60 E-value=6.5 Score=34.59 Aligned_cols=106 Identities=10% Similarity=0.074 Sum_probs=66.3
Q ss_pred HHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 026125 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (243)
Q Consensus 108 ae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAd 186 (243)
.-+.|+|-|++..|-|=. ..+|.||-..-.+.+++.+. +..|++... + .|.+++++.+...- +.|||
T Consensus 30 li~~Gv~gl~~~GttGE~-------~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg--~--~~t~~ai~la~~A~-~~Gad 97 (292)
T 2vc6_A 30 QIEEGSFGLVPCGTTGES-------PTLSKSEHEQVVEITIKTANGRVPVIAGAG--S--NSTAEAIAFVRHAQ-NAGAD 97 (292)
T ss_dssp HHHTTCSEEETTSGGGTG-------GGSCHHHHHHHHHHHHHHHTTSSCBEEECC--C--SSHHHHHHHHHHHH-HTTCS
T ss_pred HHHcCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCCCCcEEEecC--C--ccHHHHHHHHHHHH-HcCCC
Confidence 346799999876565432 25788887777777766543 344666542 3 37799999886655 69999
Q ss_pred EEEeCCCC------CchHHHHHHHHH-cCCceee-------ccCCcccccccc
Q 026125 187 AIKLEGGS------PSRITAARGIVE-AGIAVMG-------HVGLTPQAISVL 225 (243)
Q Consensus 187 aVKLEGg~------~~~~~~i~~L~~-~GIPV~G-------HiGLtPQ~~~~~ 225 (243)
+|-+---. +....-.+++.+ .++||+= ++-|.|.....+
T Consensus 98 avlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~L 150 (292)
T 2vc6_A 98 GVLIVSPYYNKPTQEGIYQHFKAIDAASTIPIIVYNIPGRSAIEIHVETLARI 150 (292)
T ss_dssp EEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHH
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCCHHHHHHH
Confidence 99774331 112222345665 4799874 345666655443
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=86.58 E-value=7.7 Score=36.01 Aligned_cols=134 Identities=11% Similarity=0.029 Sum_probs=71.4
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCH-HHHHHHHHcCCCEEEeCcchh----hhhcc----CCCCccCCH----HHHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDY-PSAVHLDSAGIDICLVGDSAA----MVVHG----HDTTLPITL----EEMLVH 143 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~-~sA~iae~AGiDiILVGDSlg----mv~lG----~~dT~~vTl----deMi~h 143 (243)
+.+|..++++..+ || ..|+.+.+||+|.|=+=-+-| ..+-= -.|--.=++ .-+++-
T Consensus 159 ~~mt~~eI~~ii~-----------~f~~AA~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Ei 227 (402)
T 2hsa_B 159 RAIGTYEISQVVE-----------DYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQV 227 (402)
T ss_dssp EECCGGGHHHHHH-----------HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHH-----------HHHHHHHHHHHcCCCEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHH
Confidence 3466666666532 22 457788899999993211100 00000 011111123 335777
Q ss_pred HHHHHcccCCCcEEeeCCCCC------CcCCHHHHHHHHHHHHHHhC------CCEEEeCCCCCc---------------
Q 026125 144 CRAVARGAKRPLLVGDLPFGT------YESSTNQAVDTAVRILKEGG------MDAIKLEGGSPS--------------- 196 (243)
Q Consensus 144 ~~aV~Rga~~~fvVaDmPfgs------Y~~s~e~Av~nA~Rl~keaG------AdaVKLEGg~~~--------------- 196 (243)
+++|++.++.-.|.+.+--.. -+.+.+++++.|.++- +.| +|.|.+-++...
T Consensus 228 v~aVr~avg~~~V~vRls~~~~~~g~~~~~~~~~~~~la~~le-~~G~~gg~~vd~i~v~~~~~~~~~~~~~~~~~~~~~ 306 (402)
T 2hsa_B 228 VQAVVSAIGADRVGVRVSPAIDHLDAMDSNPLSLGLAVVERLN-KIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEE 306 (402)
T ss_dssp HHHHHHHHCGGGEEEEECSSCCSTTCCCSCHHHHHHHHHHHHH-HHHHHHTSCCSEEEEECCCCCTTTTSSSTTTTHHHH
T ss_pred HHHHHHHhCCCcEEEEeccccccCCCCCCCCHHHHHHHHHHHH-hcCCccCCceEEEEEecCccccccCCccccccCCcc
Confidence 888888875323565653211 1124567777776554 689 999999665210
Q ss_pred hHHHHHHHHH-cCCceeeccCCccccc
Q 026125 197 RITAARGIVE-AGIAVMGHVGLTPQAI 222 (243)
Q Consensus 197 ~~~~i~~L~~-~GIPV~GHiGLtPQ~~ 222 (243)
....++.+.+ -+|||++==|++|+.+
T Consensus 307 ~~~~~~~vk~~~~iPvi~~G~i~~~~a 333 (402)
T 2hsa_B 307 EARLMRTLRNAYQGTFICSGGYTRELG 333 (402)
T ss_dssp HHHHHHHHHHHCSSCEEEESSCCHHHH
T ss_pred hHHHHHHHHHHCCCCEEEeCCCCHHHH
Confidence 1122333433 3789987655555443
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A | Back alignment and structure |
|---|
Probab=86.55 E-value=4 Score=37.85 Aligned_cols=89 Identities=16% Similarity=0.189 Sum_probs=59.9
Q ss_pred HHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 105 A~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
|+-+.++|++.+= +|+ ++++-+..+++|+++. +..-|..|.- ++| +.+++++.+.+ ++
T Consensus 206 a~~~~~~Gf~~vKik~g~---------------~~~~d~e~v~avR~a~G~d~~l~vDan-~~~--~~~~a~~~~~~-l~ 266 (441)
T 2hxt_A 206 AKEAVADGFRTIKLKVGA---------------NVQDDIRRCRLARAAIGPDIAMAVDAN-QRW--DVGPAIDWMRQ-LA 266 (441)
T ss_dssp HHHHHHTTCSEEEEECCS---------------CHHHHHHHHHHHHHHHCSSSEEEEECT-TCC--CHHHHHHHHHT-TG
T ss_pred HHHHHHcCCCEEEEccCC---------------CHHHHHHHHHHHHHhcCCCCeEEEECC-CCC--CHHHHHHHHHH-HH
Confidence 4445578999984 452 3677788899999876 4555678874 577 68999888766 44
Q ss_pred HhCCCEEEeCCCCC-chHHHHHHHHHc--CCceeec
Q 026125 182 EGGMDAIKLEGGSP-SRITAARGIVEA--GIAVMGH 214 (243)
Q Consensus 182 eaGAdaVKLEGg~~-~~~~~i~~L~~~--GIPV~GH 214 (243)
+.|.+- +|.... ....-.+.|.+. +|||++-
T Consensus 267 ~~~i~~--iEqP~~~~d~~~~~~l~~~~~~iPIa~d 300 (441)
T 2hxt_A 267 EFDIAW--IEEPTSPDDVLGHAAIRQGITPVPVSTG 300 (441)
T ss_dssp GGCCSC--EECCSCTTCHHHHHHHHHHHTTSCEEEC
T ss_pred hcCCCe--eeCCCCHHHHHHHHHHHhhCCCCCEEEe
Confidence 677664 676532 112234667765 6999974
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=86.51 E-value=3.1 Score=37.30 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=47.3
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE-EeeCCCCCCcCCHHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL-VGDLPFGTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv-VaDmPfgsY~~s~e~Av~nA~Rl~ke 182 (243)
.|+.+.+.|+|++-++-..- | |. +.+++...+++....++.||| ++.-+ ++++.++++...+ +
T Consensus 182 aa~~a~~lGaD~iKv~~~~~----~---~g--~~~~~~~vv~~~~~~~~~P~Vv~aGG~------~~~~~~~~~~~a~-~ 245 (304)
T 1to3_A 182 AAKELGDSGADLYKVEMPLY----G---KG--ARSDLLTASQRLNGHINMPWVILSSGV------DEKLFPRAVRVAM-E 245 (304)
T ss_dssp HHHHHTTSSCSEEEECCGGG----G---CS--CHHHHHHHHHHHHHTCCSCEEECCTTS------CTTTHHHHHHHHH-H
T ss_pred HHHHHHHcCCCEEEeCCCcC----C---CC--CHHHHHHHHHhccccCCCCeEEEecCC------CHHHHHHHHHHHH-H
Confidence 58888899999998874331 2 11 778877766665554778844 44322 4566666666666 5
Q ss_pred hCCCEEEe
Q 026125 183 GGMDAIKL 190 (243)
Q Consensus 183 aGAdaVKL 190 (243)
+||++|-+
T Consensus 246 aGa~Gv~v 253 (304)
T 1to3_A 246 AGASGFLA 253 (304)
T ss_dssp TTCCEEEE
T ss_pred cCCeEEEE
Confidence 89999876
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=86.50 E-value=10 Score=33.66 Aligned_cols=105 Identities=19% Similarity=0.215 Sum_probs=67.4
Q ss_pred HHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 026125 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (243)
Q Consensus 108 ae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAd 186 (243)
.-+.|+|-|++..|-|=. -.+|.||-..-.+.+++.+ ++..|++.. |+. |.+++++.+...- +.|||
T Consensus 45 li~~Gv~gi~v~GttGE~-------~~Lt~~Er~~v~~~~~~~~~grvpviaGv--g~~--~t~~ai~la~~a~-~~Gad 112 (304)
T 3l21_A 45 LVDQGCDGLVVSGTTGES-------PTTTDGEKIELLRAVLEAVGDRARVIAGA--GTY--DTAHSIRLAKACA-AEGAH 112 (304)
T ss_dssp HHHTTCSEEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHTTTSEEEEEC--CCS--CHHHHHHHHHHHH-HHTCS
T ss_pred HHHcCCCEEEeCccccch-------hhCCHHHHHHHHHHHHHHhCCCCeEEEeC--CCC--CHHHHHHHHHHHH-HcCCC
Confidence 446799988876555432 3568999877777777654 344567664 333 7899999986655 69999
Q ss_pred EEEeCCCC------CchHHHHHHHHHc-CCceee-------ccCCccccccc
Q 026125 187 AIKLEGGS------PSRITAARGIVEA-GIAVMG-------HVGLTPQAISV 224 (243)
Q Consensus 187 aVKLEGg~------~~~~~~i~~L~~~-GIPV~G-------HiGLtPQ~~~~ 224 (243)
+|-+---. +....-.+.+.++ ++||+= ++.|.|.....
T Consensus 113 avlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~ 164 (304)
T 3l21_A 113 GLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRA 164 (304)
T ss_dssp EEEEECCCSSCCCHHHHHHHHHHHHTSCSSCEEEEECHHHHSSCCCHHHHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHH
Confidence 99875432 1122334666664 899873 35555554443
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=86.46 E-value=3.9 Score=36.48 Aligned_cols=76 Identities=13% Similarity=0.176 Sum_probs=44.4
Q ss_pred HHHHHHHcCCCEEEeCcchhh-hhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAM-VVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgm-v~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ke 182 (243)
..++++.+|+|.+.+--..+. .+. .++ ..++.++...++|++ ++.|+++=...+| .+++++ .+ +.+
T Consensus 137 ~~~a~~~~~~~a~~i~~n~~~~~~~-~~~---~~~~~~~~~i~~vr~-~~~Pv~vK~v~~g---~~~e~a----~~-~~~ 203 (332)
T 1vcf_A 137 LLRLVEMLEADALAFHVNPLQEAVQ-RGD---TDFRGLVERLAELLP-LPFPVMVKEVGHG---LSREAA----LA-LRD 203 (332)
T ss_dssp HHHHHHHHTCSEEEEECCHHHHHHT-TSC---CCCTTHHHHHHHHCS-CSSCEEEECSSSC---CCHHHH----HH-HTT
T ss_pred HHHHHhhcCCCceeeccchHHHHhc-CCC---ccHHHHHHHHHHHHc-CCCCEEEEecCCC---CCHHHH----HH-HHH
Confidence 345567778887632211111 122 112 223335666788988 8888666446653 467776 34 447
Q ss_pred hCCCEEEeCC
Q 026125 183 GGMDAIKLEG 192 (243)
Q Consensus 183 aGAdaVKLEG 192 (243)
+|||+|.+.|
T Consensus 204 ~G~d~I~vs~ 213 (332)
T 1vcf_A 204 LPLAAVDVAG 213 (332)
T ss_dssp SCCSEEECCC
T ss_pred cCCCEEEeCC
Confidence 9999999965
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=86.24 E-value=1.4 Score=39.22 Aligned_cols=126 Identities=17% Similarity=0.165 Sum_probs=72.6
Q ss_pred CCCc-EEEEecCCHH----HHHHHHHcCCCEE-E-eCcchhhhh-ccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCC
Q 026125 90 NGEP-ITMVTAYDYP----SAVHLDSAGIDIC-L-VGDSAAMVV-HGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (243)
Q Consensus 90 ~g~~-ItmlTAYD~~----sA~iae~AGiDiI-L-VGDSlgmv~-lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmP 161 (243)
.+.| ++.+...|.. .|+.++++ +|.| + .|-...++. -||-+...-..+.+...+++|++..+.| |.+.+-
T Consensus 57 ~~~~~~~QL~g~~~~~~~~aa~~a~~~-~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~p-v~vKir 134 (318)
T 1vhn_A 57 HERNVAVQIFGSEPNELSEAARILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGK-FSVKTR 134 (318)
T ss_dssp TCTTEEEEEECSCHHHHHHHHHHHTTT-CSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSE-EEEEEE
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHHHh-CCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhCCC-EEEEec
Confidence 3444 4556555543 56777788 9988 4 554443322 2333333445667778888998888766 455554
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------hHHHHHHHHHcCCceeeccCC-ccccc
Q 026125 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGL-TPQAI 222 (243)
Q Consensus 162 fgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------~~~~i~~L~~~GIPV~GHiGL-tPQ~~ 222 (243)
- ++. .++.++.|. .+++.|+|+|.+.|+... ..+.++.+.+ +|||++==|+ +|+.+
T Consensus 135 ~-G~~--~~~~~~~a~-~l~~~G~d~i~v~g~~~~~~~~~~~~~~~i~~i~~-~ipVi~~GgI~s~~da 198 (318)
T 1vhn_A 135 L-GWE--KNEVEEIYR-ILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEK-RIPTFVSGDIFTPEDA 198 (318)
T ss_dssp S-CSS--SCCHHHHHH-HHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSCC-SSCEEEESSCCSHHHH
T ss_pred C-CCC--hHHHHHHHH-HHHHhCCCEEEEcCCCccccCCCCcCHHHHHHHHc-CCeEEEECCcCCHHHH
Confidence 3 231 122334444 445799999999765311 1133555666 8888876554 44443
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=86.09 E-value=6.9 Score=35.34 Aligned_cols=104 Identities=20% Similarity=0.164 Sum_probs=65.2
Q ss_pred HHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCE
Q 026125 109 DSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDA 187 (243)
Q Consensus 109 e~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAda 187 (243)
-+.|+|-|++..|-|=. ..+|.||-..-.+.+++.++ +..|++... + .|.+++++.+.... +.|||+
T Consensus 65 i~~Gv~Gl~v~GtTGE~-------~~Ls~eEr~~vi~~~ve~~~grvpViaGvg--~--~st~eai~la~~A~-~~Gada 132 (332)
T 2r8w_A 65 DAAEVDSVGILGSTGIY-------MYLTREERRRAIEAAATILRGRRTLMAGIG--A--LRTDEAVALAKDAE-AAGADA 132 (332)
T ss_dssp HHHTCSEEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHTTSSEEEEEEC--C--SSHHHHHHHHHHHH-HHTCSE
T ss_pred HHcCCCEEEECccccCh-------hhCCHHHHHHHHHHHHHHhCCCCcEEEecC--C--CCHHHHHHHHHHHH-hcCCCE
Confidence 36799999876555432 24788887777777776543 444666542 3 37899999886655 699999
Q ss_pred EEeCCCC------CchHHHHHHHHHc-CCceee-------ccCCccccccc
Q 026125 188 IKLEGGS------PSRITAARGIVEA-GIAVMG-------HVGLTPQAISV 224 (243)
Q Consensus 188 VKLEGg~------~~~~~~i~~L~~~-GIPV~G-------HiGLtPQ~~~~ 224 (243)
|-+---. +....-.+++.++ ++||+= .+-|.|.....
T Consensus 133 vlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~ 183 (332)
T 2r8w_A 133 LLLAPVSYTPLTQEEAYHHFAAVAGATALPLAIYNNPTTTRFTFSDELLVR 183 (332)
T ss_dssp EEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEECCHHHHCCCCCHHHHHH
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHH
Confidence 9774331 1122234556654 788864 34456655443
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=86.07 E-value=1.6 Score=38.56 Aligned_cols=118 Identities=14% Similarity=0.120 Sum_probs=69.3
Q ss_pred CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc---CCCcEE------eeCC
Q 026125 91 GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA---KRPLLV------GDLP 161 (243)
Q Consensus 91 g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga---~~~fvV------aDmP 161 (243)
+.++.++. .+......+-++|+|.+-+-++..-.. - ..-...|.+|.+..++.+.+.+ ... +. .+-|
T Consensus 73 ~~~~~~l~-~~~~~i~~a~~ag~~~v~i~~~~sd~~-~-~~~~~~~~~e~l~~~~~~i~~a~~~G~~-v~~~l~~~~~~~ 148 (298)
T 2cw6_A 73 GINYPVLT-PNLKGFEAAVAAGAKEVVIFGAASELF-T-KKNINCSIEESFQRFDAILKAAQSANIS-VRGYVSCALGCP 148 (298)
T ss_dssp TCBCCEEC-CSHHHHHHHHHTTCSEEEEEEESCHHH-H-HHHHSCCHHHHHHHHHHHHHHHHHTTCE-EEEEEETTTCBT
T ss_pred CCEEEEEc-CCHHhHHHHHHCCCCEEEEEecCCHHH-H-HHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEEEEEEeeCC
Confidence 45666665 567777888899999987655553210 0 0001235566555444433322 222 22 3446
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc--CCceeec
Q 026125 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA--GIAVMGH 214 (243)
Q Consensus 162 fgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~--GIPV~GH 214 (243)
|.+. .+++..++-+.++. +.||+.|.|-|-.. ....++++|.+. ++|+--|
T Consensus 149 ~~~~-~~~~~~~~~~~~~~-~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~i~~H 206 (298)
T 2cw6_A 149 YEGK-ISPAKVAEVTKKFY-SMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVH 206 (298)
T ss_dssp TTBS-CCHHHHHHHHHHHH-HTTCSEEEEEETTSCCCHHHHHHHHHHHHHHSCGGGEEEE
T ss_pred cCCC-CCHHHHHHHHHHHH-HcCCCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 6566 58898888876666 69999999986522 234556666554 4566555
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=86.06 E-value=6.6 Score=35.72 Aligned_cols=90 Identities=12% Similarity=-0.051 Sum_probs=59.5
Q ss_pred HHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 105 A~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
|+-+.++|+|.+= +| ++ ++++.+..+++|+++. +...|..|.. ++| +.+++++.+.+ ++
T Consensus 157 a~~~~~~Gf~~vKik~g---------~~-----~~~~~~e~v~avR~a~G~d~~l~vDan-~~~--~~~~a~~~~~~-l~ 218 (391)
T 2qgy_A 157 IEKFYGKKYGGIKIYPM---------LD-----SLSISIQFVEKVREIVGDELPLMLDLA-VPE--DLDQTKSFLKE-VS 218 (391)
T ss_dssp HHHHHHTTCSCEEECCC---------CS-----SHHHHHHHHHHHHHHHCSSSCEEEECC-CCS--CHHHHHHHHHH-HG
T ss_pred HHHHHHcCCCEEEEccC---------CC-----hHHHHHHHHHHHHHHhCCCCEEEEEcC-CCC--CHHHHHHHHHH-HH
Confidence 4455578999884 33 11 1577789999999976 3455678985 577 68999998766 45
Q ss_pred HhCCCEEEeCCCCC-chHHHHHHHHH-cCCceeec
Q 026125 182 EGGMDAIKLEGGSP-SRITAARGIVE-AGIAVMGH 214 (243)
Q Consensus 182 eaGAdaVKLEGg~~-~~~~~i~~L~~-~GIPV~GH 214 (243)
+.|.+. +|.... ....-.+.|.+ .+|||++=
T Consensus 219 ~~~i~~--iEqP~~~~d~~~~~~l~~~~~iPIa~d 251 (391)
T 2qgy_A 219 SFNPYW--IEEPVDGENISLLTEIKNTFNMKVVTG 251 (391)
T ss_dssp GGCCSE--EECSSCTTCHHHHHHHHHHCSSCEEEC
T ss_pred hcCCCe--EeCCCChhhHHHHHHHHhhCCCCEEEc
Confidence 677775 575532 11222455554 48999975
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=85.81 E-value=6.1 Score=34.76 Aligned_cols=106 Identities=13% Similarity=0.122 Sum_probs=65.6
Q ss_pred HHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 026125 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (243)
Q Consensus 108 ae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAd 186 (243)
.-++|+|-|++..|-|=. ..+|.||-..-.+.+++.++ +..|++.. |+ .|.+++++.+.... +.|||
T Consensus 31 li~~Gv~gl~~~GttGE~-------~~Ls~~Er~~v~~~~~~~~~gr~pviaGv--g~--~~t~~ai~la~~a~-~~Gad 98 (292)
T 2ojp_A 31 HVASGTSAIVSVGTTGES-------ATLNHDEHADVVMMTLDLADGRIPVIAGT--GA--NATAEAISLTQRFN-DSGIV 98 (292)
T ss_dssp HHHHTCCEEEESSTTTTG-------GGSCHHHHHHHHHHHHHHHTTSSCEEEEC--CC--SSHHHHHHHHHHTT-TSSCS
T ss_pred HHHcCCCEEEECccccch-------hhCCHHHHHHHHHHHHHHhCCCCcEEEec--CC--ccHHHHHHHHHHHH-hcCCC
Confidence 345799999876555432 25788887777777666443 34466665 33 37899998886654 79999
Q ss_pred EEEeCCC------CCchHHHHHHHHHc-CCceee-------ccCCcccccccc
Q 026125 187 AIKLEGG------SPSRITAARGIVEA-GIAVMG-------HVGLTPQAISVL 225 (243)
Q Consensus 187 aVKLEGg------~~~~~~~i~~L~~~-GIPV~G-------HiGLtPQ~~~~~ 225 (243)
++-+--- .+....-.+++.++ ++||+= ++-|.|.....+
T Consensus 99 avlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~L 151 (292)
T 2ojp_A 99 GCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNVPSRTGCDLLPETVGRL 151 (292)
T ss_dssp EEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEECCHHHHSCCCCHHHHHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcchhccCCCHHHHHHH
Confidence 9976432 11122334566664 677763 445666655443
|
| >3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A | Back alignment and structure |
|---|
Probab=85.78 E-value=2.5 Score=37.12 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=50.0
Q ss_pred HHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCE
Q 026125 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDA 187 (243)
Q Consensus 108 ae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAda 187 (243)
+.++|.|+|++|- +..+|.+++..-+++|++ .+.|++. +|+. - ++ + ..|||+
T Consensus 32 ~~~~GtDaI~vGg-----------s~gvt~~~~~~~v~~ik~-~~~Piil--~p~~-~----~~-------~--~~gaD~ 83 (235)
T 3w01_A 32 ICMSQTDAIMIGG-----------TDDVTEDNVIHLMSKIRR-YPLPLVL--EISN-I----ES-------V--MPGFDF 83 (235)
T ss_dssp HHTSSCSEEEECC-----------SSCCCHHHHHHHHHHHTT-SCSCEEE--ECCC-S----TT-------C--CTTCSE
T ss_pred HHHcCCCEEEECC-----------cCCcCHHHHHHHHHHhcC-cCCCEEE--ecCC-H----HH-------h--hcCCCE
Confidence 4589999999996 446799999999999999 8888655 6662 2 11 1 248999
Q ss_pred EEeCC------CCCchHHHHHHHHHcCC
Q 026125 188 IKLEG------GSPSRITAARGIVEAGI 209 (243)
Q Consensus 188 VKLEG------g~~~~~~~i~~L~~~GI 209 (243)
+-+-+ ..+..-.-.+++.+.|+
T Consensus 84 il~pslln~~~~~~i~g~~~~a~~~~gl 111 (235)
T 3w01_A 84 YFVPTVLNSTDVAFHNGTLLEALKTYGH 111 (235)
T ss_dssp EEEEEETTBSSGGGTTHHHHHHHHHHGG
T ss_pred EEEccccCCCCcchhhhHHHHHHHHcCC
Confidence 98742 22222122355667665
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} | Back alignment and structure |
|---|
Probab=85.72 E-value=6.2 Score=35.89 Aligned_cols=91 Identities=16% Similarity=0.222 Sum_probs=59.9
Q ss_pred HHHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 104 sA~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
.|+-+.++|+|.+= +|+ ++++-+..+++|+++. +...|..|.- ++| +.+++++.+.+ +
T Consensus 152 ~a~~~~~~Gf~~vKik~g~---------------~~~~~~e~v~avR~a~g~d~~l~vDan-~~~--~~~~a~~~~~~-l 212 (397)
T 2qde_A 152 EALAVLREGFHFVKLKAGG---------------PLKADIAMVAEVRRAVGDDVDLFIDIN-GAW--TYDQALTTIRA-L 212 (397)
T ss_dssp HHHHHHHHTCSCEEEECCS---------------CHHHHHHHHHHHHHHHCTTSCEEEECT-TCC--CHHHHHHHHHH-H
T ss_pred HHHHHHHhhhhheeecccC---------------CHHHHHHHHHHHHHhhCCCCEEEEECC-CCC--CHHHHHHHHHH-H
Confidence 34445577999884 553 4567788899999876 4455678864 577 78999988764 5
Q ss_pred HHhCCCEEEeCCCCC-chHHHHHHHHHc-CCceeecc
Q 026125 181 KEGGMDAIKLEGGSP-SRITAARGIVEA-GIAVMGHV 215 (243)
Q Consensus 181 keaGAdaVKLEGg~~-~~~~~i~~L~~~-GIPV~GHi 215 (243)
++.|.+. +|.... ....-.+.|.+. +|||++-=
T Consensus 213 ~~~~i~~--iEqP~~~~~~~~~~~l~~~~~iPIa~dE 247 (397)
T 2qde_A 213 EKYNLSK--IEQPLPAWDLDGMARLRGKVATPIYADE 247 (397)
T ss_dssp GGGCCSC--EECCSCTTCHHHHHHHHTTCSSCEEEST
T ss_pred HhCCCCE--EECCCChhhHHHHHHHHhhCCCCEEEeC
Confidence 5677764 576532 112224556643 89999753
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=85.60 E-value=0.97 Score=39.65 Aligned_cols=41 Identities=24% Similarity=0.277 Sum_probs=30.8
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
.+.++++|.|+|.+|-| ..+|++.++..+++|++ .+.|++.
T Consensus 26 ~~~l~~~GaD~ielG~S-----------~Gvt~~~~~~~v~~ir~-~~~Pivl 66 (240)
T 1viz_A 26 LEILCESGTDAVIIGGS-----------DGVTEDNVLRMMSKVRR-FLVPCVL 66 (240)
T ss_dssp HHHHHTSCCSEEEECC---------------CHHHHHHHHHHHTT-SSSCEEE
T ss_pred HHHHHHcCCCEEEECCC-----------CCCCHHHHHHHHHHhhC-cCCCEEE
Confidence 45678899999999964 56789999999999988 7777543
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=85.59 E-value=12 Score=33.60 Aligned_cols=99 Identities=20% Similarity=0.136 Sum_probs=63.4
Q ss_pred HHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 105 A~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
|+-+.++|+|.+= +|..- +| ..+ .+++.+..+++|+++. +..-|..|.- ++| +.+++++.+. .++
T Consensus 157 a~~~~~~Gf~~iKik~g~~~----~~---~~~-~~~~~~e~v~avr~a~g~d~~l~vDan-~~~--~~~~a~~~~~-~l~ 224 (382)
T 1rvk_A 157 AETLVKRGYKGIKLHTWMPP----VS---WAP-DVKMDLKACAAVREAVGPDIRLMIDAF-HWY--SRTDALALGR-GLE 224 (382)
T ss_dssp HHHHHHHTCSEEEEECCCTT----ST---TCC-CHHHHHHHHHHHHHHHCTTSEEEEECC-TTC--CHHHHHHHHH-HHH
T ss_pred HHHHHHCCCCEEEEcCCcCc----cc---ccc-chHHHHHHHHHHHHHhCCCCeEEEECC-CCC--CHHHHHHHHH-HHH
Confidence 4445577999983 55421 12 222 6788889999999977 3455678874 577 6899998875 455
Q ss_pred HhCCCEEEeCCCCCc-hHHHHHHHHH-cCCceeeccCC
Q 026125 182 EGGMDAIKLEGGSPS-RITAARGIVE-AGIAVMGHVGL 217 (243)
Q Consensus 182 eaGAdaVKLEGg~~~-~~~~i~~L~~-~GIPV~GHiGL 217 (243)
+.|.+. +|..... ...-.+.|.+ .+|||++-=.+
T Consensus 225 ~~~i~~--iE~P~~~~~~~~~~~l~~~~~iPIa~dE~~ 260 (382)
T 1rvk_A 225 KLGFDW--IEEPMDEQSLSSYKWLSDNLDIPVVGPESA 260 (382)
T ss_dssp TTTCSE--EECCSCTTCHHHHHHHHHHCSSCEEECSSC
T ss_pred hcCCCE--EeCCCChhhHHHHHHHHhhCCCCEEEeCCc
Confidence 677764 6765321 1222455554 48999985333
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=85.52 E-value=4.3 Score=34.28 Aligned_cols=90 Identities=14% Similarity=0.122 Sum_probs=44.0
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ke 182 (243)
..|+.++++|++.|++-+.- .-|... .+. +...+.+++..+.| +++. |+- .+++++ .+++ +
T Consensus 160 e~~~~~~~~G~~~i~~t~~~---~~g~~~--g~~----~~~i~~l~~~~~ip-via~---GGI-~~~ed~----~~~~-~ 220 (266)
T 2w6r_A 160 DWVVEVEKRGAGEILLTSID---RDGTKS--GYD----TEMIRFVRPLTTLP-IIAS---GGA-GKMEHF----LEAF-L 220 (266)
T ss_dssp HHHHHHHHTTCSEEEEEETT---TTTTCS--CCC----HHHHHHHGGGCCSC-EEEE---SCC-CSHHHH----HHHH-H
T ss_pred HHHHHHHHcCCCEEEEEeec---CCCCcC--CCC----HHHHHHHHHHcCCC-EEEe---CCC-CCHHHH----HHHH-H
Confidence 34688999999998763211 011111 122 34556788877777 5555 244 367777 4556 5
Q ss_pred hCCCEEEeCCCCC----chHHHHHHHHHcCCce
Q 026125 183 GGMDAIKLEGGSP----SRITAARGIVEAGIAV 211 (243)
Q Consensus 183 aGAdaVKLEGg~~----~~~~~i~~L~~~GIPV 211 (243)
+|||+|-+=-+-. ....+.+.|.+.||+|
T Consensus 221 ~Gadgv~vgsal~~~~~~~~~~~~~l~~~g~~~ 253 (266)
T 2w6r_A 221 AGADAALAASVFHFREIDMRELKEYLKKHGVNV 253 (266)
T ss_dssp HTCSEEEESTTTC--------------------
T ss_pred cCCHHHHccHHHHcCCCCHHHHHHHHHHCCCcc
Confidence 8999998743311 2334456677888876
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=85.48 E-value=2.9 Score=36.27 Aligned_cols=31 Identities=26% Similarity=0.261 Sum_probs=24.8
Q ss_pred CCcEEEEecCCH-------HHHHHHHHcCCCEEEeCcc
Q 026125 91 GEPITMVTAYDY-------PSAVHLDSAGIDICLVGDS 121 (243)
Q Consensus 91 g~~ItmlTAYD~-------~sA~iae~AGiDiILVGDS 121 (243)
+.|+.+++.|+. .+++.+.++|+|.+++.|-
T Consensus 94 ~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl 131 (262)
T 2ekc_A 94 DIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDL 131 (262)
T ss_dssp TSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTC
T ss_pred CCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCC
Confidence 679999988873 4567788999998888874
|
| >1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A | Back alignment and structure |
|---|
Probab=85.44 E-value=2.9 Score=39.34 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=68.5
Q ss_pred HcCCCEEEeCcchhhhhccCCCCc-----cCCHHHHHHHHHHHHccc---CCCcEEeeCC-CCCCc--CCHHHHHH---H
Q 026125 110 SAGIDICLVGDSAAMVVHGHDTTL-----PITLEEMLVHCRAVARGA---KRPLLVGDLP-FGTYE--SSTNQAVD---T 175 (243)
Q Consensus 110 ~AGiDiILVGDSlgmv~lG~~dT~-----~vTldeMi~h~~aV~Rga---~~~fvVaDmP-fgsY~--~s~e~Av~---n 175 (243)
+||.|+|.+- +.+....++.+.+ .-..+|+...+-.++|-+ ...||.++++ +|.|. .+.+++.+ -
T Consensus 65 ~AGAdII~TN-Tf~A~~~~l~~~G~~~~~~~~~~eln~~Av~LAreAa~~~~~~VAGsIGP~g~~l~~~s~eel~~~~~e 143 (406)
T 1lt8_A 65 RAGSNVMQTF-TFYASEDKLENRGNYVLEKISGQEVNEAAADIARQVADEGDALVAGGVSQTPSYLSAKSETEVKKVFLQ 143 (406)
T ss_dssp HTTCSEEECS-CTTCSSCC-------------CHHHHHHHHHHHHHHHTTTTCEEEEEECCCHHHHTTCHHHHHHHHHHH
T ss_pred HhCccceecc-ccccCHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccCCCCHHHHHHHHHH
Confidence 6899987765 6666666666554 234466665444444422 1367778873 44331 23444333 3
Q ss_pred HHHHHHHhCCCEEEeCCCCCc--hHHHHHHHHHcCCceeeccCCcccccccccCccccccCHHhhc
Q 026125 176 AVRILKEGGMDAIKLEGGSPS--RITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAV 239 (243)
Q Consensus 176 A~Rl~keaGAdaVKLEGg~~~--~~~~i~~L~~~GIPV~GHiGLtPQ~~~~~GGykvqGkt~~~A~ 239 (243)
-++.+.++|||.+-+|=-... +.-+++++.+.|+||+--+-+.+. |. .-|-+.+++.
T Consensus 144 qi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~lPv~iS~T~~~~------G~-l~G~~~~~~~ 202 (406)
T 1lt8_A 144 QLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASGKPVAATMAIGPE------GD-LHGVPPGEAA 202 (406)
T ss_dssp HHHHHHHHTCSEEEECCCSCHHHHHHHHHHHGGGTSCEEEEECCBTT------BC-TTCCCHHHHH
T ss_pred HHHHHhhCCCCEEEEcccCCHHHHHHHHHHHHHhCCcEEEEEEECCC------CC-cCCCcHHHHH
Confidence 344445799999999966432 222345556679999988777532 33 5677776654
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=85.38 E-value=4.6 Score=36.06 Aligned_cols=87 Identities=20% Similarity=0.279 Sum_probs=53.0
Q ss_pred HHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEe-CcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC
Q 026125 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF 162 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILV-GDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf 162 (243)
++..++.+. .+++.+.+...|+.++++|+|.|++ |-..| |+.. ...++ ...+.+++..+.| |+++=
T Consensus 117 ~~~l~~~g~-~v~~~v~s~~~a~~a~~~GaD~i~v~g~~~G----G~~G-~~~~~----~ll~~i~~~~~iP-viaaG-- 183 (326)
T 3bo9_A 117 IRELKENGT-KVIPVVASDSLARMVERAGADAVIAEGMESG----GHIG-EVTTF----VLVNKVSRSVNIP-VIAAG-- 183 (326)
T ss_dssp HHHHHHTTC-EEEEEESSHHHHHHHHHTTCSCEEEECTTSS----EECC-SSCHH----HHHHHHHHHCSSC-EEEES--
T ss_pred HHHHHHcCC-cEEEEcCCHHHHHHHHHcCCCEEEEECCCCC----ccCC-CccHH----HHHHHHHHHcCCC-EEEEC--
Confidence 444444444 4567888999999999999998876 53222 2211 11233 3334566666666 55553
Q ss_pred CCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 163 GTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 163 gsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
+. .+.+++ .+++ +.||++|.+
T Consensus 184 -GI-~~~~dv----~~al-~~GA~gV~v 204 (326)
T 3bo9_A 184 -GI-ADGRGM----AAAF-ALGAEAVQM 204 (326)
T ss_dssp -SC-CSHHHH----HHHH-HHTCSEEEE
T ss_pred -CC-CCHHHH----HHHH-HhCCCEEEe
Confidence 44 356666 4555 379999986
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=85.37 E-value=7.3 Score=32.33 Aligned_cols=99 Identities=16% Similarity=0.138 Sum_probs=56.2
Q ss_pred EecCCHH----HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHH
Q 026125 97 VTAYDYP----SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQA 172 (243)
Q Consensus 97 lTAYD~~----sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~A 172 (243)
+.+-|+. .+..+.++|+|++-++..-|..+ ++. ...+ ..++.+++.++.+ +.+++ | + .++++.
T Consensus 17 i~a~d~~~~~~~i~~~~~~G~d~i~l~~~dg~f~---~~~-~~~~----~~i~~l~~~~~~~-~~v~l-~--v-nd~~~~ 83 (230)
T 1rpx_A 17 ILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFV---PNI-TIGP----LVVDSLRPITDLP-LDVHL-M--I-VEPDQR 83 (230)
T ss_dssp GGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSS---SCB-CCCH----HHHHHHGGGCCSC-EEEEE-E--S-SSHHHH
T ss_pred eecCCHHHHHHHHHHHHHCCCCEEEEeeccCCcc---ccc-ccCH----HHHHHHHhccCCc-EEEEE-E--e-cCHHHH
Confidence 4555543 35677889999997763111111 222 2233 4456677666445 45665 2 3 355555
Q ss_pred HHHHHHHHHHhCCCEEEeCCC--C-CchHHHHHHHHHcCCcee
Q 026125 173 VDTAVRILKEGGMDAIKLEGG--S-PSRITAARGIVEAGIAVM 212 (243)
Q Consensus 173 v~nA~Rl~keaGAdaVKLEGg--~-~~~~~~i~~L~~~GIPV~ 212 (243)
++ .+.++|||+|.+-+. . +.....++.+.+.|+.+.
T Consensus 84 v~----~~~~~Gad~v~vh~~~~~~~~~~~~~~~~~~~g~~ig 122 (230)
T 1rpx_A 84 VP----DFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAG 122 (230)
T ss_dssp HH----HHHHTTCSEEEEECSTTTCSCHHHHHHHHHHTTSEEE
T ss_pred HH----HHHHcCCCEEEEEecCccchhHHHHHHHHHHcCCcEE
Confidence 33 334689999966554 2 334556788888876543
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=85.31 E-value=11 Score=34.50 Aligned_cols=68 Identities=16% Similarity=0.294 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCC--CC-----CchHHHHHHHHHc
Q 026125 135 ITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG--GS-----PSRITAARGIVEA 207 (243)
Q Consensus 135 vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEG--g~-----~~~~~~i~~L~~~ 207 (243)
.++++ .+.|++.++.|+++-.. .+++++ .++. ++|||+|.+.+ |. .-....+..+.++
T Consensus 216 ~~~~~----i~~lr~~~~~PvivK~v------~~~e~a----~~a~-~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~ 280 (368)
T 2nli_A 216 ISPRD----IEEIAGHSGLPVFVKGI------QHPEDA----DMAI-KRGASGIWVSNHGARQLYEAPGSFDTLPAIAER 280 (368)
T ss_dssp CCHHH----HHHHHHHSSSCEEEEEE------CSHHHH----HHHH-HTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHH
T ss_pred hhHHH----HHHHHHHcCCCEEEEcC------CCHHHH----HHHH-HcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHH
Confidence 45554 46777778889877642 366776 4455 79999999954 21 1122334444432
Q ss_pred ---CCceeeccCC
Q 026125 208 ---GIAVMGHVGL 217 (243)
Q Consensus 208 ---GIPV~GHiGL 217 (243)
.|||++==|+
T Consensus 281 v~~~ipVia~GGI 293 (368)
T 2nli_A 281 VNKRVPIVFDSGV 293 (368)
T ss_dssp HTTSSCEEECSSC
T ss_pred hCCCCeEEEECCC
Confidence 6898875443
|
| >1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=85.15 E-value=8 Score=32.74 Aligned_cols=100 Identities=13% Similarity=0.137 Sum_probs=62.9
Q ss_pred EEecCCHHHHHHHHHcCCCEE-EeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHH
Q 026125 96 MVTAYDYPSAVHLDSAGIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVD 174 (243)
Q Consensus 96 mlTAYD~~sA~iae~AGiDiI-LVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~ 174 (243)
+.+--+..-|..+.++|+|+| +|= . -+|.-.|+.++... +.+..+.....+-. | ...++++.
T Consensus 5 ICGit~~eda~~a~~~GaD~iGfif-------~-~~SpR~V~~~~a~~----i~~~~~~~~~~VgV-f--vn~~~~~i-- 67 (203)
T 1v5x_A 5 ICGITRLEDALLAEALGAFALGFVL-------A-PGSRRRIAPEAARA----IGEALGPFVVRVGV-F--RDQPPEEV-- 67 (203)
T ss_dssp ECCCCCHHHHHHHHHHTCSEEEEEC-------C-TTCTTBCCHHHHHH----HHHHSCSSSEEEEE-E--SSCCHHHH--
T ss_pred EcCCCcHHHHHHHHHcCCCEEEEEe-------c-CCCCCcCCHHHHHH----HHHhCCCCCCEEEE-E--eCCCHHHH--
Confidence 445567778999999999988 441 1 25667888876544 44444322222333 4 22356666
Q ss_pred HHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccCC
Q 026125 175 TAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGL 217 (243)
Q Consensus 175 nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiGL 217 (243)
.+++++.+.|.|+|-|.. .+..++.| +.|+||+==+..
T Consensus 68 --~~~~~~~~ld~vQLHG~e--~~~~~~~l-~~~~~vika~~v 105 (203)
T 1v5x_A 68 --LRLMEEARLQVAQLHGEE--PPEWAEAV-GRFYPVIKAFPL 105 (203)
T ss_dssp --HHHHHHTTCSEEEECSCC--CHHHHHHH-TTTSCEEEEEEC
T ss_pred --HHHHHhhCCCEEEECCCC--CHHHHHHh-ccCCCEEEEEEc
Confidence 456677899999997664 34557777 447888754443
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=85.06 E-value=5.2 Score=32.80 Aligned_cols=91 Identities=18% Similarity=0.223 Sum_probs=54.3
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeC---cchhhhhccCCC-CccCCHHHHHHHHHHHHcccC-CC
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVG---DSAAMVVHGHDT-TLPITLEEMLVHCRAVARGAK-RP 154 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVG---DSlgmv~lG~~d-T~~vTldeMi~h~~aV~Rga~-~~ 154 (243)
.+..+++.. +. .+..+++.+...+..+.+.|+|.+++| ++-. .++ ..+..++ ..+.+++..+ .|
T Consensus 106 ~~~~~~~~~-g~-~~~~~s~~t~~e~~~a~~~g~d~v~~~~v~~t~~-----~~~~~~~~~~~----~l~~~~~~~~~~p 174 (227)
T 2tps_A 106 NAKEVRAAI-GD-MILGVSAHTMSEVKQAEEDGADYVGLGPIYPTET-----KKDTRAVQGVS----LIEAVRRQGISIP 174 (227)
T ss_dssp CHHHHHHHH-TT-SEEEEEECSHHHHHHHHHHTCSEEEECCSSCCCS-----SSSCCCCCTTH----HHHHHHHTTCCCC
T ss_pred CHHHHHHhc-CC-cEEEEecCCHHHHHHHHhCCCCEEEECCCcCCCC-----CCCCCCccCHH----HHHHHHHhCCCCC
Confidence 366666643 23 677788899989999999999999974 2211 111 1233443 3345665555 66
Q ss_pred cEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 026125 155 LLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (243)
Q Consensus 155 fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEG 192 (243)
++++= +- +++++ .+++ +.||++|-+-.
T Consensus 175 -via~G---GI--~~~nv----~~~~-~~Ga~gv~vgs 201 (227)
T 2tps_A 175 -IVGIG---GI--TIDNA----APVI-QAGADGVSMIS 201 (227)
T ss_dssp -EEEES---SC--CTTTS----HHHH-HTTCSEEEESH
T ss_pred -EEEEc---CC--CHHHH----HHHH-HcCCCEEEEhH
Confidence 44442 22 33433 3444 48999998743
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=84.99 E-value=11 Score=32.80 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=67.8
Q ss_pred HHHhhhCCCcEEEEecCCHHHH----HHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 84 LRQKHKNGEPITMVTAYDYPSA----VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA----~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
+.+..++..-|.++...|...| +.+-+.|+++|=+-..- +- - +...+++++..+..++-++
T Consensus 27 ~~~~l~~~~vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t-----------~~-a---~e~I~~l~~~~~~~~iGaG 91 (232)
T 4e38_A 27 INNQLKALKVIPVIAIDNAEDIIPLGKVLAENGLPAAEITFRS-----------DA-A---VEAIRLLRQAQPEMLIGAG 91 (232)
T ss_dssp HHHHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTS-----------TT-H---HHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCC-----------CC-H---HHHHHHHHHhCCCCEEeEC
Confidence 4444455568888898887654 45556699999653110 11 1 2333556666666544454
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccCCcccc
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQA 221 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiGLtPQ~ 221 (243)
+. .+.+++ ...+ ++||+.|..-+- .++++++..+.|+|++-=+ .||..
T Consensus 92 ----TV-lt~~~a----~~Ai-~AGA~fIvsP~~---~~~vi~~~~~~gi~~ipGv-~TptE 139 (232)
T 4e38_A 92 ----TI-LNGEQA----LAAK-EAGATFVVSPGF---NPNTVRACQEIGIDIVPGV-NNPST 139 (232)
T ss_dssp ----CC-CSHHHH----HHHH-HHTCSEEECSSC---CHHHHHHHHHHTCEEECEE-CSHHH
T ss_pred ----Cc-CCHHHH----HHHH-HcCCCEEEeCCC---CHHHHHHHHHcCCCEEcCC-CCHHH
Confidence 45 466776 3444 699999977543 3667889999999997532 25543
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=84.80 E-value=13 Score=34.03 Aligned_cols=131 Identities=11% Similarity=0.025 Sum_probs=73.3
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCH-HHHHHHHHcCCCEE-EeCc---chhhhhc----cCCCCccCCHH----HHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDY-PSAVHLDSAGIDIC-LVGD---SAAMVVH----GHDTTLPITLE----EMLVH 143 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~-~sA~iae~AGiDiI-LVGD---Slgmv~l----G~~dT~~vTld----eMi~h 143 (243)
+.+|..++++..+ || ..|+.|.+||||.| +=+. =+...+- -..|.-.=+++ -+++-
T Consensus 149 r~mt~~eI~~ii~-----------~f~~AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~ev 217 (361)
T 3gka_A 149 RALELDEIPGVVA-----------AFRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEV 217 (361)
T ss_dssp EECCGGGHHHHHH-----------HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHH
T ss_pred ccCCHHHHHHHHH-----------HHHHHHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHH
Confidence 4578888877653 23 45778899999999 4231 1110000 01111111344 34667
Q ss_pred HHHHHcccCC-CcEEeeCC----CCCC--cCCHHHHHHHHHHHHHHhCCCEEEeCCCC---CchHHHHHHHHHcCCceee
Q 026125 144 CRAVARGAKR-PLLVGDLP----FGTY--ESSTNQAVDTAVRILKEGGMDAIKLEGGS---PSRITAARGIVEAGIAVMG 213 (243)
Q Consensus 144 ~~aV~Rga~~-~fvVaDmP----fgsY--~~s~e~Av~nA~Rl~keaGAdaVKLEGg~---~~~~~~i~~L~~~GIPV~G 213 (243)
+++|++.++. + |.+-+- +.++ ..+.+++++.|.++- +.|+|.|.+-++. +.... |+..+ .|||++
T Consensus 218 v~aVr~~vg~~~-v~vRls~~~~~~g~~~~~~~~~~~~la~~l~-~~Gvd~i~v~~~~~~~~~~~~-ik~~~--~iPvi~ 292 (361)
T 3gka_A 218 VDAAIDVWSAAR-VGVHLAPRGDAHTMGDSDPAATFGHVARELG-RRRIAFLFARESFGGDAIGQQ-LKAAF--GGPFIV 292 (361)
T ss_dssp HHHHHHHHCGGG-EEEEECTTCCSSSCCCSCHHHHHHHHHHHHH-HTTCSEEEEECCCSTTCCHHH-HHHHH--CSCEEE
T ss_pred HHHHHHHcCCCe-EEEecccccccCCCCCCCcHHHHHHHHHHHH-HcCCCEEEECCCCCCHHHHHH-HHHHc--CCCEEE
Confidence 7788887753 4 443332 1111 112456777766554 6899999997764 22223 44444 689998
Q ss_pred ccCCcccccc
Q 026125 214 HVGLTPQAIS 223 (243)
Q Consensus 214 HiGLtPQ~~~ 223 (243)
==|++|+.+.
T Consensus 293 ~Ggit~e~a~ 302 (361)
T 3gka_A 293 NENFTLDSAQ 302 (361)
T ss_dssp ESSCCHHHHH
T ss_pred eCCCCHHHHH
Confidence 7677776543
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=84.70 E-value=7.3 Score=35.43 Aligned_cols=98 Identities=17% Similarity=0.199 Sum_probs=57.8
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcch--hhhhccCCCCccCCHHHHHHHHHHHH---cccC--
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSA--AMVVHGHDTTLPITLEEMLVHCRAVA---RGAK-- 152 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSl--gmv~lG~~dT~~vTldeMi~h~~aV~---Rga~-- 152 (243)
.+..+++. -+.|+.+=+..+...|+.+.++|+|.|.||... +....| .+.-+++.+..-.++.+ ...+
T Consensus 202 ~i~~l~~~--~~~pvi~ggi~t~e~a~~~~~~Gad~i~vg~Gg~~~~~~~~---~g~~~~~~l~~v~~~~~~~~~~~~~~ 276 (393)
T 2qr6_A 202 NLKEFIGS--LDVPVIAGGVNDYTTALHMMRTGAVGIIVGGGENTNSLALG---MEVSMATAIADVAAARRDYLDETGGR 276 (393)
T ss_dssp CHHHHHHH--CSSCEEEECCCSHHHHHHHHTTTCSEEEESCCSCCHHHHTS---CCCCHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHh--cCCCEEECCcCCHHHHHHHHHcCCCEEEECCCcccccccCC---CCCChHHHHHHHHHHHHHhHhhcCCc
Confidence 35555553 367887778899999999999999999887411 111111 12223333322222210 0022
Q ss_pred CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 153 ~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
...|++|= +. .+.+++ .+.+ ..||++|.+-
T Consensus 277 ~ipvia~G---GI-~~~~dv----~kal-alGA~~V~iG 306 (393)
T 2qr6_A 277 YVHIIADG---SI-ENSGDV----VKAI-ACGADAVVLG 306 (393)
T ss_dssp CCEEEECS---SC-CSHHHH----HHHH-HHTCSEEEEC
T ss_pred ceEEEEEC---CC-CCHHHH----HHHH-HcCCCEEEEC
Confidence 13478874 44 367777 4566 4799999984
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=84.61 E-value=2.7 Score=37.92 Aligned_cols=91 Identities=12% Similarity=0.160 Sum_probs=57.4
Q ss_pred cCCHHHH----HHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHH
Q 026125 99 AYDYPSA----VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVD 174 (243)
Q Consensus 99 AYD~~sA----~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~ 174 (243)
.||...| +.+++.|++.| -+.+ .+-.++ ..+.+++.++.| |++|=- . .+++++
T Consensus 201 ~~~~~~a~~~~~~l~~~~i~~i--EqP~----------~~~d~~----~~~~l~~~~~iP-I~~dE~---~-~~~~~~-- 257 (371)
T 2ovl_A 201 KWTVDGAIRAARALAPFDLHWI--EEPT----------IPDDLV----GNARIVRESGHT-IAGGEN---L-HTLYDF-- 257 (371)
T ss_dssp CSCHHHHHHHHHHHGGGCCSEE--ECCS----------CTTCHH----HHHHHHHHHCSC-EEECTT---C-CSHHHH--
T ss_pred CCCHHHHHHHHHHHHhcCCCEE--ECCC----------CcccHH----HHHHHHhhCCCC-EEeCCC---C-CCHHHH--
Confidence 4776544 44566787765 2221 011233 335566666666 677743 3 366666
Q ss_pred HHHHHHHHhCCCEEEeC----CCCCchHHHHHHHHHcCCceeec
Q 026125 175 TAVRILKEGGMDAIKLE----GGSPSRITAARGIVEAGIAVMGH 214 (243)
Q Consensus 175 nA~Rl~keaGAdaVKLE----Gg~~~~~~~i~~L~~~GIPV~GH 214 (243)
.+++++..+|.|.+- ||-.....+++.....||+||-|
T Consensus 258 --~~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~A~~~gi~~~~h 299 (371)
T 2ovl_A 258 --HNAVRAGSLTLPEPDVSNIGGYTTFRKVAALAEANNMLLTSH 299 (371)
T ss_dssp --HHHHHHTCCSEECCCTTTTTSHHHHHHHHHHHHHTTCCEEEC
T ss_pred --HHHHHcCCCCEEeeCccccCCHHHHHHHHHHHHHcCCeEccc
Confidence 677877889999886 56544556566667899999999
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=84.58 E-value=5.5 Score=35.68 Aligned_cols=107 Identities=16% Similarity=0.122 Sum_probs=57.5
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHc---ccCCCcEEeeC-CCCCC---cCCHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR---GAKRPLLVGDL-PFGTY---ESSTNQAVDT 175 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~R---ga~~~fvVaDm-PfgsY---~~s~e~Av~n 175 (243)
.++..+-++|+|++-+= +.+|-++.. .+|+..++.+.+ ....|| +.++ |.|.- +.++.+.+..
T Consensus 112 ~~ve~a~~~GAdaV~vl-----v~~~~d~~~----~~~~~~i~~v~~~~~~~G~p~-lv~~~~~g~~v~~~~~~~~~v~~ 181 (304)
T 1to3_A 112 INAQAVKRDGAKALKLL-----VLWRSDEDA----QQRLNMVKEFNELCHSNGLLS-IIEPVVRPPRCGDKFDREQAIID 181 (304)
T ss_dssp CCHHHHHHTTCCEEEEE-----EEECTTSCH----HHHHHHHHHHHHHHHTTTCEE-EEEEEECCCSSCSCCCHHHHHHH
T ss_pred hhHHHHHHcCCCEEEEE-----EEcCCCccH----HHHHHHHHHHHHHHHHcCCcE-EEEEECCCCccccCCChhHHHHH
Confidence 45555668899988531 223322211 556655555544 445565 4444 33321 1233255666
Q ss_pred HHHHHHHhCCCEEEeCCC-----C-CchHHHHHHHHH-cCCc-eeeccCCcc
Q 026125 176 AVRILKEGGMDAIKLEGG-----S-PSRITAARGIVE-AGIA-VMGHVGLTP 219 (243)
Q Consensus 176 A~Rl~keaGAdaVKLEGg-----~-~~~~~~i~~L~~-~GIP-V~GHiGLtP 219 (243)
+.+...+.|||-+|++-. . +....+++.+.+ .++| |+.==|..+
T Consensus 182 aa~~a~~lGaD~iKv~~~~~~~g~~~~~~~vv~~~~~~~~~P~Vv~aGG~~~ 233 (304)
T 1to3_A 182 AAKELGDSGADLYKVEMPLYGKGARSDLLTASQRLNGHINMPWVILSSGVDE 233 (304)
T ss_dssp HHHHHTTSSCSEEEECCGGGGCSCHHHHHHHHHHHHHTCCSCEEECCTTSCT
T ss_pred HHHHHHHcCCCEEEeCCCcCCCCCHHHHHHHHHhccccCCCCeEEEecCCCH
Confidence 566666899999999873 1 122233444444 4899 755434444
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.43 E-value=0.93 Score=40.22 Aligned_cols=89 Identities=19% Similarity=0.108 Sum_probs=53.9
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHh
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~kea 183 (243)
++.+.++|+|.|.+.|+.|. .+-+++....+.+++..| .++.+ - . +.+.--++.|+...+ ++
T Consensus 165 ~~~~~~~G~d~i~l~DT~G~----------~~P~~~~~lv~~l~~~~~~~~l~~-H----~-Hn~~Gla~An~laAv-~a 227 (302)
T 2ftp_A 165 ARELQQMGCYEVSLGDTIGV----------GTAGATRRLIEAVASEVPRERLAG-H----F-HDTYGQALANIYASL-LE 227 (302)
T ss_dssp HHHHHHTTCSEEEEEESSSC----------CCHHHHHHHHHHHTTTSCGGGEEE-E----E-BCTTSCHHHHHHHHH-HT
T ss_pred HHHHHHcCCCEEEEeCCCCC----------cCHHHHHHHHHHHHHhCCCCeEEE-E----e-CCCccHHHHHHHHHH-Hh
Confidence 34444889998888888865 245566666778877764 23222 1 1 124445677777778 48
Q ss_pred CCCEEEeC----C---------CCCchHHHHHHHHHcCCc
Q 026125 184 GMDAIKLE----G---------GSPSRITAARGIVEAGIA 210 (243)
Q Consensus 184 GAdaVKLE----G---------g~~~~~~~i~~L~~~GIP 210 (243)
||+-|..- | |.--.++++-.|...|+.
T Consensus 228 Ga~~vd~tv~GlG~cp~a~gr~GN~~~E~lv~~l~~~g~~ 267 (302)
T 2ftp_A 228 GIAVFDSSVAGLGGCPYAKGATGNVASEDVLYLLNGLEIH 267 (302)
T ss_dssp TCCEEEEBGGGCCBCGGGTTCBCBCBHHHHHHHHHHTTCB
T ss_pred CCCEEEecccccCCCCCCCCCCCChhHHHHHHHHHhcCCC
Confidence 89887752 1 222245666677766654
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=84.43 E-value=6.4 Score=35.15 Aligned_cols=105 Identities=20% Similarity=0.270 Sum_probs=67.7
Q ss_pred HHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 026125 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (243)
Q Consensus 108 ae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAd 186 (243)
.-++|+|-|++..|-|=. ..+|.||-..-.+.+++.+. +..|++.. | . |.+++++.+...- +.|||
T Consensus 42 li~~Gv~Gl~v~GtTGE~-------~~Ls~eEr~~v~~~~v~~~~grvpViaGv--g--~-~t~~ai~la~~A~-~~Gad 108 (316)
T 3e96_A 42 IVDNGIDVIVPCGNTSEF-------YALSLEEAKEEVRRTVEYVHGRALVVAGI--G--Y-ATSTAIELGNAAK-AAGAD 108 (316)
T ss_dssp HHTTTCCEECTTSGGGTG-------GGSCHHHHHHHHHHHHHHHTTSSEEEEEE--C--S-SHHHHHHHHHHHH-HHTCS
T ss_pred HHHcCCCEEEeCccccCc-------ccCCHHHHHHHHHHHHHHhCCCCcEEEEe--C--c-CHHHHHHHHHHHH-hcCCC
Confidence 446899999876565432 25789997777777766543 44567665 2 2 6899999886655 69999
Q ss_pred EEEeCCC------CCchHHHHHHHHHc-CCceeec---cCCcccccccc
Q 026125 187 AIKLEGG------SPSRITAARGIVEA-GIAVMGH---VGLTPQAISVL 225 (243)
Q Consensus 187 aVKLEGg------~~~~~~~i~~L~~~-GIPV~GH---iGLtPQ~~~~~ 225 (243)
+|-+=-- .+....-.+++.++ ++||+-. ..|+|.....+
T Consensus 109 avlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~g~~l~~~~~~~L 157 (316)
T 3e96_A 109 AVMIHMPIHPYVTAGGVYAYFRDIIEALDFPSLVYFKDPEISDRVLVDL 157 (316)
T ss_dssp EEEECCCCCSCCCHHHHHHHHHHHHHHHTSCEEEEECCTTSCTHHHHHH
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHH
Confidence 9987422 11122334556554 8999864 35666655444
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A | Back alignment and structure |
|---|
Probab=84.31 E-value=13 Score=33.19 Aligned_cols=92 Identities=13% Similarity=0.218 Sum_probs=60.7
Q ss_pred HHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 105 A~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
|+-+.++|++.+= +|+ + ++++-+..+++|+++. +..-+..|. .++| +.+++++.+.+ ++
T Consensus 148 a~~~~~~Gf~~iKik~g~---------~-----~~~~d~~~v~avr~a~g~~~~l~vDa-n~~~--~~~~a~~~~~~-l~ 209 (366)
T 1tkk_A 148 AENYLKQGFQTLKIKVGK---------D-----DIATDIARIQEIRKRVGSAVKLRLDA-NQGW--RPKEAVTAIRK-ME 209 (366)
T ss_dssp HHHHHHHTCCEEEEECCS---------S-----CHHHHHHHHHHHHHHHCSSSEEEEEC-TTCS--CHHHHHHHHHH-HH
T ss_pred HHHHHHcCCCeEEEEeCC---------C-----CHHHHHHHHHHHHHHhCCCCeEEEEC-CCCC--CHHHHHHHHHH-Hh
Confidence 3444467999984 443 1 3677789999999987 455577996 4678 78999988766 44
Q ss_pred HhCCCEEEeCCCCCc-hHHHHHHHHH-cCCceeec
Q 026125 182 EGGMDAIKLEGGSPS-RITAARGIVE-AGIAVMGH 214 (243)
Q Consensus 182 eaGAdaVKLEGg~~~-~~~~i~~L~~-~GIPV~GH 214 (243)
+.+.+...+|..... ...-.+.|.+ .+|||++-
T Consensus 210 ~~~~~i~~iEqP~~~~d~~~~~~l~~~~~ipIa~d 244 (366)
T 1tkk_A 210 DAGLGIELVEQPVHKDDLAGLKKVTDATDTPIMAD 244 (366)
T ss_dssp HTTCCEEEEECCSCTTCHHHHHHHHHHCSSCEEEC
T ss_pred hcCCCceEEECCCCcccHHHHHHHHhhCCCCEEEc
Confidence 533456678876321 1222455554 48999986
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=84.25 E-value=8.1 Score=35.07 Aligned_cols=89 Identities=16% Similarity=0.109 Sum_probs=58.7
Q ss_pred HHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHH
Q 026125 106 VHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 106 ~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ke 182 (243)
+-+.++|++.+= +|+ -++++-+..+++|+++. +...|..|.- ++| +.+++++.+.+ +++
T Consensus 174 ~~~~~~Gf~~iKik~g~--------------~~~~~~~e~v~avr~a~g~~~~l~vDan-~~~--~~~~a~~~~~~-l~~ 235 (392)
T 1tzz_A 174 RGYLDRGYNVVKMKIGG--------------APIEEDRMRIEAVLEEIGKDAQLAVDAN-GRF--NLETGIAYAKM-LRD 235 (392)
T ss_dssp HHHHTTTCSEEEEECSS--------------SCHHHHHHHHHHHHHHHTTTCEEEEECT-TCC--CHHHHHHHHHH-HTT
T ss_pred HHHHHcCCCEEEEcCCC--------------CCHHHHHHHHHHHHHhcCCCCeEEEECC-CCC--CHHHHHHHHHH-HHH
Confidence 334467999983 553 13577788999999876 3455678884 577 68999988766 545
Q ss_pred hCCCEEEeCCCCC-chHHHHHHHHH-cCCceeec
Q 026125 183 GGMDAIKLEGGSP-SRITAARGIVE-AGIAVMGH 214 (243)
Q Consensus 183 aGAdaVKLEGg~~-~~~~~i~~L~~-~GIPV~GH 214 (243)
.|.+ .+|.... ....-.+.|.+ .+|||++-
T Consensus 236 ~~i~--~iEqP~~~~d~~~~~~l~~~~~iPIa~d 267 (392)
T 1tzz_A 236 YPLF--WYEEVGDPLDYALQAALAEFYPGPMATG 267 (392)
T ss_dssp SCCS--EEECCSCTTCHHHHHHHTTTCCSCEEEC
T ss_pred cCCC--eecCCCChhhHHHHHHHHhhCCCCEEEC
Confidence 6665 5677632 11222455654 37999975
|
| >4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* | Back alignment and structure |
|---|
Probab=84.18 E-value=3 Score=38.71 Aligned_cols=89 Identities=13% Similarity=0.174 Sum_probs=62.4
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHHHh
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKEG 183 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~kea 183 (243)
|+.++++|+|.+++-- |.-...|-++++.|.++|+++ .|+++=|.|- -++..+++.. .||.+--
T Consensus 147 a~~A~~~Gadavlvv~---------PyY~k~sq~gl~~hf~~IA~a--~PiilYNiP~rTg~~ls~e~l----~~La~~p 211 (360)
T 4dpp_A 147 TEQGFAVGMHAALHIN---------PYYGKTSIEGLIAHFQSVLHM--GPTIIYNVPGRTGQDIPPRAI----FKLSQNP 211 (360)
T ss_dssp HHHHHHTTCSEEEEEC---------CCSSCCCHHHHHHHHHTTGGG--SCEEEEECHHHHSCCCCHHHH----HHHTTST
T ss_pred HHHHHHcCCCEEEEcC---------CCCCCCCHHHHHHHHHHHHHh--CCEEEEeCCcccCCCCCHHHH----HHHhcCC
Confidence 5678889999987641 222345889999999999986 4888899985 2444576655 4555545
Q ss_pred CCCEEEeCCCCCchHHHHHHHHHcCCcee
Q 026125 184 GMDAIKLEGGSPSRITAARGIVEAGIAVM 212 (243)
Q Consensus 184 GAdaVKLEGg~~~~~~~i~~L~~~GIPV~ 212 (243)
...+||-..|. .. +..+...++.|.
T Consensus 212 nIvGIKdssgd---~~-i~~~~~~~f~v~ 236 (360)
T 4dpp_A 212 NLAGVKECVGN---KR-VEEYTENGVVVW 236 (360)
T ss_dssp TEEEEEECSCH---HH-HHHHHHTTCCEE
T ss_pred CEEEEEeCCCc---HH-HHHhhCCCEEEE
Confidence 68899998885 23 345666677764
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=84.13 E-value=8.9 Score=33.65 Aligned_cols=111 Identities=16% Similarity=0.205 Sum_probs=65.3
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
+..|++..++-...++.+.+|..++..+++. +|++-+|... ++- ....+++.+ ++.|.++ --
T Consensus 76 l~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~-vd~~kIga~~------------~~n---~~ll~~~a~-~~kPV~l-k~ 137 (262)
T 1zco_A 76 LRWMREAADEYGLVTVTEVMDTRHVELVAKY-SDILQIGARN------------SQN---FELLKEVGK-VENPVLL-KR 137 (262)
T ss_dssp HHHHHHHHHHHTCEEEEECCCGGGHHHHHHH-CSEEEECGGG------------TTC---HHHHHHHTT-SSSCEEE-EC
T ss_pred HHHHHHHHHHcCCcEEEeeCCHHhHHHHHhh-CCEEEECccc------------ccC---HHHHHHHHh-cCCcEEE-ec
Confidence 4445555544456677899999999999999 9999999432 111 122345555 5666444 32
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCC-CEEEeCCC--C------Cc-hHHHHHHHHHc-CCceee
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGM-DAIKLEGG--S------PS-RITAARGIVEA-GIAVMG 213 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGA-daVKLEGg--~------~~-~~~~i~~L~~~-GIPV~G 213 (243)
+. . .++++.+..+ ..+...|. +.+-||-| . +. ....+..|.+. |.||+|
T Consensus 138 G~--~-~t~~e~~~Av-~~i~~~Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~lk~~~~~pVi~ 197 (262)
T 1zco_A 138 GM--G-NTIQELLYSA-EYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKELSHLPIIV 197 (262)
T ss_dssp CT--T-CCHHHHHHHH-HHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEE
T ss_pred CC--C-CCHHHHHHHH-HHHHHCCCCeEEEEECCCCCCCCcChhhcCHHHHHHHHhhhCCCEEE
Confidence 22 2 2566664444 45555665 67777733 1 00 11235667666 888855
|
| >2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=84.09 E-value=7 Score=35.68 Aligned_cols=98 Identities=18% Similarity=0.204 Sum_probs=52.4
Q ss_pred HHHHHHcCCCEEEeCc-chhhhhccCCCCccCCHHHHHHHH----HHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGD-SAAMVVHGHDTTLPITLEEMLVHC----RAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 105 A~iae~AGiDiILVGD-Slgmv~lG~~dT~~vTldeMi~h~----~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl 179 (243)
|+-.-+.|.|+|=||- |- .|. .+++.+|-+... +++++..+...|..| ||. ++.+ + +.
T Consensus 71 A~~~v~~GAdIIDIGgeST------rPG-~~v~~~eEl~Rv~pvI~~l~~~~~~vpISID----T~~--~~Va-e---aA 133 (318)
T 2vp8_A 71 VHRAVADGADVIDVGGVKA------GPG-ERVDVDTEITRLVPFIEWLRGAYPDQLISVD----TWR--AQVA-K---AA 133 (318)
T ss_dssp HHHHHHTTCSEEEEC-----------------CHHHHHHHHHHHHHHHHHHSTTCEEEEE----CSC--HHHH-H---HH
T ss_pred HHHHHHCCCCEEEECCCcC------CCC-CCCCHHHHHHHHHHHHHHHHhhCCCCeEEEe----CCC--HHHH-H---HH
Confidence 3445578999997772 21 233 568877766654 666654434557789 563 3333 3 34
Q ss_pred HHHhCCCEEEeCCCCCchHHHHHHHHHcCCceee-cc-CCcccc
Q 026125 180 LKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMG-HV-GLTPQA 221 (243)
Q Consensus 180 ~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~G-Hi-GLtPQ~ 221 (243)
+ ++||+.|+==.|.. .+...+...+.|.|||. |. |..|++
T Consensus 134 l-~aGa~iINDVsg~~-d~~m~~vaa~~g~~vVlmh~~G~~p~t 175 (318)
T 2vp8_A 134 C-AAGADLINDTWGGV-DPAMPEVAAEFGAGLVCAHTGGALPRT 175 (318)
T ss_dssp H-HHTCCEEEETTSSS-STTHHHHHHHHTCEEEEECC-------
T ss_pred H-HhCCCEEEECCCCC-chHHHHHHHHhCCCEEEECCCCCCccc
Confidence 4 35999997333322 23445666788999875 76 332665
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=84.04 E-value=10 Score=32.99 Aligned_cols=98 Identities=24% Similarity=0.157 Sum_probs=54.6
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc---CCCcEEeeCCCCCCc---CCHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA---KRPLLVGDLPFGTYE---SSTNQAVDTA 176 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga---~~~fvVaDmPfgsY~---~s~e~Av~nA 176 (243)
.++..+-+.|+|.|-+-.- +| .-..++++..+++|++.+ ..+|++-+.+-|.-- .+++ .+..+
T Consensus 96 ~~ve~Ai~~Ga~~v~~~~n-----ig-----~~~~~~~~~~~~~v~~~~~~~~~~vIi~~~~~G~~~~~~~s~~-~i~~a 164 (263)
T 1w8s_A 96 CSVEEAVSLGASAVGYTIY-----PG-----SGFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPE-IVAYA 164 (263)
T ss_dssp SCHHHHHHTTCSEEEEEEC-----TT-----STTHHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHH-HHHHH
T ss_pred HHHHHHHHCCCCEEEEEEe-----cC-----CcCHHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCccccCCCHH-HHHHH
Confidence 3455566789998833111 12 124467777777766543 567766544432210 1555 44455
Q ss_pred HHHHHHhCCCEEEeCCCCCchHHHHHHHHHc-CC-ceee
Q 026125 177 VRILKEGGMDAIKLEGGSPSRITAARGIVEA-GI-AVMG 213 (243)
Q Consensus 177 ~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~-GI-PV~G 213 (243)
.++..+.|||-||..=. . ..+.++.+++. ++ ||..
T Consensus 165 ~~~a~~~GAD~vkt~~~-~-~~e~~~~~~~~~~~~pV~a 201 (263)
T 1w8s_A 165 ARIALELGADAMKIKYT-G-DPKTFSWAVKVAGKVPVLM 201 (263)
T ss_dssp HHHHHHHTCSEEEEECC-S-SHHHHHHHHHHTTTSCEEE
T ss_pred HHHHHHcCCCEEEEcCC-C-CHHHHHHHHHhCCCCeEEE
Confidence 56667899999999832 1 23335666642 44 5544
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=84.03 E-value=4.3 Score=41.68 Aligned_cols=80 Identities=21% Similarity=0.212 Sum_probs=44.7
Q ss_pred HHHHHHHcCCCEEEeCcchhhh--hccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMV--VHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv--~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
.|+.++++|+|+|-+.-+.... .-|+-....-..+.+...+++|++.++.|+++==.|. . .+ ..+.|.++ +
T Consensus 653 ~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~~~~Pv~vK~~~~--~-~~---~~~~a~~~-~ 725 (1025)
T 1gte_A 653 LSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPN--V-TD---IVSIARAA-K 725 (1025)
T ss_dssp HHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCSSCEEEEECSC--S-SC---HHHHHHHH-H
T ss_pred HHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHhhCCceEEEeCCC--h-HH---HHHHHHHH-H
Confidence 4566778899999654322221 1111112223456667778888888888865522232 2 12 33334444 4
Q ss_pred HhCCCEEEe
Q 026125 182 EGGMDAIKL 190 (243)
Q Consensus 182 eaGAdaVKL 190 (243)
++|+|+|.+
T Consensus 726 ~~G~d~i~v 734 (1025)
T 1gte_A 726 EGGADGVTA 734 (1025)
T ss_dssp HHTCSEEEE
T ss_pred HcCCCEEEE
Confidence 799999999
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=83.96 E-value=4 Score=35.50 Aligned_cols=84 Identities=18% Similarity=0.063 Sum_probs=41.7
Q ss_pred CcEEEEecCCH---HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCC
Q 026125 92 EPITMVTAYDY---PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESS 168 (243)
Q Consensus 92 ~~ItmlTAYD~---~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s 168 (243)
.|+.+=|+=|. .+....+++|.|+|-+|=. +.+....++++++.+++.+ +.+ ++.+.++ | .+
T Consensus 13 ~~~~~~t~g~p~~~~~~~~l~~~Gad~ielg~p-------r~~~~g~~~~~~~~~l~~~----~~~-~~pn~~~--~-~~ 77 (264)
T 1xm3_A 13 SRLLLGTGKYPSFDIQKEAVAVSESDILTFAVR-------RMNIFEASQPNFLEQLDLS----KYT-LLPNTAG--A-ST 77 (264)
T ss_dssp CCEEEECSCSSCHHHHHHHHHHHTCSEEEEETT-------SSTTC-------CTTCCGG----GSE-EEEECTT--C-SS
T ss_pred CCCEEEecCCCCHHHHHHHHHHcCCeEEEEccc-------ccccCCCCHHHHHHHHHhc----CCe-EcCCccc--c-CC
Confidence 35555555332 3356778889999988843 1111135566666554422 222 3455553 3 36
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEeC
Q 026125 169 TNQAVDTAVRILKEG-GMDAIKLE 191 (243)
Q Consensus 169 ~e~Av~nA~Rl~kea-GAdaVKLE 191 (243)
++++++.+... +++ |++.|++|
T Consensus 78 ~~~~~~f~~~a-~~agg~~~i~l~ 100 (264)
T 1xm3_A 78 AEEAVRIARLA-KASGLCDMIKVE 100 (264)
T ss_dssp HHHHHHHHHHH-HHTTCCSSEEEC
T ss_pred HHHHHHHHHHH-HHcCCCCeEEEe
Confidence 77777555433 343 56676665
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* | Back alignment and structure |
|---|
Probab=83.93 E-value=8.5 Score=35.12 Aligned_cols=91 Identities=14% Similarity=0.096 Sum_probs=60.0
Q ss_pred HHHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 104 sA~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
.|+-+.++|++.+= +|+ + .+++-+..+++|+++. +...|..|.- ++| +.+++++.+.+ +
T Consensus 182 ~a~~~~~~Gf~~vKik~g~---------~-----~~~~d~e~v~avR~avG~d~~l~vDan-~~~--~~~~ai~~~~~-l 243 (398)
T 2pp0_A 182 NVVISRENGIGGIKLKVGQ---------P-----NCAEDIRRLTAVREALGDEFPLMVDAN-QQW--DRETAIRMGRK-M 243 (398)
T ss_dssp HHHHHHHTTCSCEEEECCC---------S-----CHHHHHHHHHHHHHHHCSSSCEEEECT-TCS--CHHHHHHHHHH-H
T ss_pred HHHHHHHhCCCeEEEecCC---------C-----CHHHHHHHHHHHHHHcCCCCeEEEECC-CCC--CHHHHHHHHHH-H
Confidence 34445578999884 442 1 3677788899999876 4455678874 577 68999988766 5
Q ss_pred HHhCCCEEEeCCCCC-chHHHHHHHHH-cCCceeec
Q 026125 181 KEGGMDAIKLEGGSP-SRITAARGIVE-AGIAVMGH 214 (243)
Q Consensus 181 keaGAdaVKLEGg~~-~~~~~i~~L~~-~GIPV~GH 214 (243)
++.|.+. +|.... ....-.+.|.+ .+|||++-
T Consensus 244 ~~~~i~~--iEqP~~~~d~~~~~~l~~~~~iPIa~d 277 (398)
T 2pp0_A 244 EQFNLIW--IEEPLDAYDIEGHAQLAAALDTPIATG 277 (398)
T ss_dssp GGGTCSC--EECCSCTTCHHHHHHHHHHCSSCEEEC
T ss_pred HHcCCce--eeCCCChhhHHHHHHHHhhCCCCEEec
Confidence 5677764 676532 11222455554 48999975
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=83.91 E-value=2.6 Score=38.19 Aligned_cols=118 Identities=13% Similarity=0.052 Sum_probs=67.8
Q ss_pred CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc---CCCcEEeeCCC---CC
Q 026125 91 GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA---KRPLLVGDLPF---GT 164 (243)
Q Consensus 91 g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga---~~~fvVaDmPf---gs 164 (243)
+.++++++..-- ....+-++|+|.+-+-++++-. +... ....|.+|.+...+.+.+.+ ... +..++++ .+
T Consensus 89 ~~~i~~l~~~~~-~i~~a~~~g~~~v~i~~~~s~~-~~~~-~~~~s~~e~l~~~~~~v~~ak~~G~~-v~~~~~~~~~~~ 164 (337)
T 3ble_A 89 RIEILGFVDGNK-TVDWIKDSGAKVLNLLTKGSLH-HLEK-QLGKTPKEFFTDVSFVIEYAIKSGLK-INVYLEDWSNGF 164 (337)
T ss_dssp GEEEEEESSTTH-HHHHHHHHTCCEEEEEEECSHH-HHHH-HTCCCHHHHHHHHHHHHHHHHHTTCE-EEEEEETHHHHH
T ss_pred CCeEEEEccchh-hHHHHHHCCCCEEEEEEecCHH-HHHH-HhCCCHHHHHHHHHHHHHHHHHCCCE-EEEEEEECCCCC
Confidence 346666655433 6667778999998665554321 1000 01235555554444433221 122 3344443 44
Q ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEeCCCC-----CchHHHHHHHHHc--CCceeec
Q 026125 165 YESSTNQAVDTAVRILKEGGMDAIKLEGGS-----PSRITAARGIVEA--GIAVMGH 214 (243)
Q Consensus 165 Y~~s~e~Av~nA~Rl~keaGAdaVKLEGg~-----~~~~~~i~~L~~~--GIPV~GH 214 (243)
. .+++..++.+.++. +.||+.|.|-|-. +....++++|.++ ++|+--|
T Consensus 165 ~-~~~~~~~~~~~~~~-~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~p~~~i~~H 219 (337)
T 3ble_A 165 R-NSPDYVKSLVEHLS-KEHIERIFLPDTLGVLSPEETFQGVDSLIQKYPDIHFEFH 219 (337)
T ss_dssp H-HCHHHHHHHHHHHH-TSCCSEEEEECTTCCCCHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred c-CCHHHHHHHHHHHH-HcCCCEEEEecCCCCcCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 4 57888888887666 7999999998752 2234556666654 5777767
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=83.89 E-value=2.9 Score=36.61 Aligned_cols=89 Identities=20% Similarity=0.185 Sum_probs=56.9
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHh
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~kea 183 (243)
++.+.++|+|.|.+.|+.|. .+-+++....+.+++..+ .++.+ -. +.+.--++.|+...+ ++
T Consensus 161 ~~~~~~~G~d~i~l~Dt~G~----------~~P~~~~~lv~~l~~~~~~~~l~~-H~-----Hn~~Gla~an~l~Ai-~a 223 (295)
T 1ydn_A 161 TEQLFSLGCHEVSLGDTIGR----------GTPDTVAAMLDAVLAIAPAHSLAG-HY-----HDTGGRALDNIRVSL-EK 223 (295)
T ss_dssp HHHHHHHTCSEEEEEETTSC----------CCHHHHHHHHHHHHTTSCGGGEEE-EE-----BCTTSCHHHHHHHHH-HH
T ss_pred HHHHHhcCCCEEEecCCCCC----------cCHHHHHHHHHHHHHhCCCCeEEE-EE-----CCCcchHHHHHHHHH-Hh
Confidence 44455899999999998765 356667777788888776 34433 11 112234566777778 58
Q ss_pred CCCEEEeCC-------------CCCchHHHHHHHHHcCCc
Q 026125 184 GMDAIKLEG-------------GSPSRITAARGIVEAGIA 210 (243)
Q Consensus 184 GAdaVKLEG-------------g~~~~~~~i~~L~~~GIP 210 (243)
||+-|..-= |.-..++++..|...|+.
T Consensus 224 G~~~vd~sv~GlG~cp~a~g~~GN~~~e~lv~~l~~~g~~ 263 (295)
T 1ydn_A 224 GLRVFDASVGGLGGCPFAPGAKGNVDTVAVVEMLHEMGFE 263 (295)
T ss_dssp TCCEEEEBTTCCSCBTTBTTSCCBCBHHHHHHHHHHTTCB
T ss_pred CCCEEEeccccCCCCCCCCCCcCChhHHHHHHHHHhcCCC
Confidence 999888631 222355667777766654
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=83.78 E-value=4.3 Score=33.31 Aligned_cols=71 Identities=23% Similarity=0.285 Sum_probs=44.8
Q ss_pred HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 102 ~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
...|+.++++|+|.|.+-|..+. + ..........+.+++..+.|+++.++ . .+++++ .+++
T Consensus 36 ~~~a~~~~~~G~d~i~v~~~~~~---~------~~~~~~~~~i~~i~~~~~ipvi~~g~----i-~~~~~~----~~~~- 96 (253)
T 1h5y_A 36 VEMAVRYEEEGADEIAILDITAA---P------EGRATFIDSVKRVAEAVSIPVLVGGG----V-RSLEDA----TTLF- 96 (253)
T ss_dssp HHHHHHHHHTTCSCEEEEECCCC---T------TTHHHHHHHHHHHHHHCSSCEEEESS----C-CSHHHH----HHHH-
T ss_pred HHHHHHHHHcCCCEEEEEeCCcc---c------cCCcccHHHHHHHHHhcCCCEEEECC----C-CCHHHH----HHHH-
Confidence 34688899999998765442211 1 12233456677888877778665442 3 366665 3444
Q ss_pred HhCCCEEEeC
Q 026125 182 EGGMDAIKLE 191 (243)
Q Consensus 182 eaGAdaVKLE 191 (243)
++|||+|.+-
T Consensus 97 ~~Gad~V~i~ 106 (253)
T 1h5y_A 97 RAGADKVSVN 106 (253)
T ss_dssp HHTCSEEEES
T ss_pred HcCCCEEEEC
Confidence 5799999974
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=83.75 E-value=16 Score=32.21 Aligned_cols=90 Identities=17% Similarity=0.179 Sum_probs=50.5
Q ss_pred CCcEEEE-ec-CC----HHHHHHHHHcCCCEEEeCcc-hhhh----------hccCCCCccCCHHHHHHHHHHHHccc--
Q 026125 91 GEPITMV-TA-YD----YPSAVHLDSAGIDICLVGDS-AAMV----------VHGHDTTLPITLEEMLVHCRAVARGA-- 151 (243)
Q Consensus 91 g~~Itml-TA-YD----~~sA~iae~AGiDiILVGDS-lgmv----------~lG~~dT~~vTldeMi~h~~aV~Rga-- 151 (243)
+.|+.+= +. +| ...|+.++++|+|.|.|... .+.. .-|+.. .++ ...-+..++.|++..
T Consensus 211 ~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g-~~~-~~~~~~~i~~i~~~~~~ 288 (336)
T 1f76_A 211 YVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSG-RPL-QLKSTEIIRRLSLELNG 288 (336)
T ss_dssp CCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEE-GGG-HHHHHHHHHHHHHHHTT
T ss_pred cCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCC-chh-HHHHHHHHHHHHHHhCC
Confidence 4566553 33 22 33489999999998865432 2221 001110 000 122245556676666
Q ss_pred CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 026125 152 KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (243)
Q Consensus 152 ~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEG 192 (243)
+.| |+++ |+. .|.+++ .+.+. .|||+|.+--
T Consensus 289 ~ip-Vi~~---GGI-~~~~da----~~~l~-~GAd~V~igr 319 (336)
T 1f76_A 289 RLP-IIGV---GGI-DSVIAA----REKIA-AGASLVQIYS 319 (336)
T ss_dssp SSC-EEEE---SSC-CSHHHH----HHHHH-HTCSEEEESH
T ss_pred CCC-EEEE---CCC-CCHHHH----HHHHH-CCCCEEEeeH
Confidence 445 6666 345 478888 56774 7899999843
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=83.72 E-value=9.4 Score=34.70 Aligned_cols=91 Identities=12% Similarity=-0.019 Sum_probs=59.9
Q ss_pred HHHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 104 sA~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
.|+-+.++|+|.+= +|+ + .+++-+..+++|+++. +..-|..|.. ++| +.+++++.+.+ +
T Consensus 169 ~a~~~~~~Gf~~vKik~g~---------~-----~~~~~~e~v~avR~avg~d~~l~vDan-~~~--~~~~a~~~~~~-l 230 (393)
T 2og9_A 169 NASASIERGIGGIKLKVGQ---------P-----DGALDIARVTAVRKHLGDAVPLMVDAN-QQW--DRPTAQRMCRI-F 230 (393)
T ss_dssp HHHHHHHTTCCCEEEECCC---------S-----CHHHHHHHHHHHHHHHCTTSCEEEECT-TCC--CHHHHHHHHHH-H
T ss_pred HHHHHHHcCCCEEEEecCC---------C-----CHHHHHHHHHHHHHHcCCCCEEEEECC-CCC--CHHHHHHHHHH-H
Confidence 34555578999984 342 1 3677788899999976 4445678975 577 78999998866 5
Q ss_pred HHhCCCEEEeCCCCC-chHHHHHHHHH-cCCceeec
Q 026125 181 KEGGMDAIKLEGGSP-SRITAARGIVE-AGIAVMGH 214 (243)
Q Consensus 181 keaGAdaVKLEGg~~-~~~~~i~~L~~-~GIPV~GH 214 (243)
++.|.+. +|.... ....-.+.|.+ .+|||++=
T Consensus 231 ~~~~i~~--iE~P~~~~~~~~~~~l~~~~~iPIa~d 264 (393)
T 2og9_A 231 EPFNLVW--IEEPLDAYDHEGHAALALQFDTPIATG 264 (393)
T ss_dssp GGGCCSC--EECCSCTTCHHHHHHHHHHCSSCEEEC
T ss_pred HhhCCCE--EECCCCcccHHHHHHHHHhCCCCEEeC
Confidence 5677775 565422 11222455554 48999975
|
| >1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 | Back alignment and structure |
|---|
Probab=83.54 E-value=6.6 Score=35.02 Aligned_cols=101 Identities=17% Similarity=0.156 Sum_probs=50.0
Q ss_pred HHHHHHcCCCEEEeCc-chhhhhccCCCCccCCHHHHHHHHHHHHcccC--CCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGD-SAAMVVHGHDTTLPITLEEMLVHCRAVARGAK--RPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 105 A~iae~AGiDiILVGD-Slgmv~lG~~dT~~vTldeMi~h~~aV~Rga~--~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
|+-.-+.|.|+|=||- | ..|...+++-+|-+.+..-+.+... ...|..| ||. ++-+ + +.+
T Consensus 35 a~~~v~~GAdiIDIGges------trpga~~v~~~eE~~Rv~pvi~~l~~~~~piSID----T~~--~~va-~---aAl- 97 (280)
T 1eye_A 35 GLAMAAAGAGIVDVGGES------SRPGATRVDPAVETSRVIPVVKELAAQGITVSID----TMR--ADVA-R---AAL- 97 (280)
T ss_dssp HHHHHHTTCSEEEEECC--------------------HHHHHHHHHHHHHTTCCEEEE----CSC--HHHH-H---HHH-
T ss_pred HHHHHHCCCCEEEECCcc------CCCCCCCCCHHHHHHHHHHHHHHhhcCCCEEEEe----CCC--HHHH-H---HHH-
Confidence 3445678999997762 3 1233345666664444333333221 3346788 563 3333 3 344
Q ss_pred HhCCCEEEe-CCCCCchHHHHHHHHHcCCceee-ccCCcccccc
Q 026125 182 EGGMDAIKL-EGGSPSRITAARGIVEAGIAVMG-HVGLTPQAIS 223 (243)
Q Consensus 182 eaGAdaVKL-EGg~~~~~~~i~~L~~~GIPV~G-HiGLtPQ~~~ 223 (243)
++||+.|+= .|+.. .+...+...+.|.|||. |..=+|++..
T Consensus 98 ~aGa~iINdvsg~~~-d~~m~~~~a~~~~~vVlmh~~G~p~tm~ 140 (280)
T 1eye_A 98 QNGAQMVNDVSGGRA-DPAMGPLLAEADVPWVLMHWRAVSADTP 140 (280)
T ss_dssp HTTCCEEEETTTTSS-CTTHHHHHHHHTCCEEEECCCCSCTTCT
T ss_pred HcCCCEEEECCCCCC-CHHHHHHHHHhCCeEEEEcCCCCCcchh
Confidence 369999973 34321 23345556788998875 7755677643
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=83.38 E-value=4.9 Score=36.00 Aligned_cols=90 Identities=17% Similarity=0.138 Sum_probs=59.3
Q ss_pred HHHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHH-HHHHHH
Q 026125 104 SAVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAV-DTAVRI 179 (243)
Q Consensus 104 sA~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av-~nA~Rl 179 (243)
.|+-+.++|++.+= +|+ ++++.+..+++|+++. +..-+..|.- ++| +.++++ +.+.+
T Consensus 148 ~a~~~~~~Gf~~iKik~g~---------------~~~~~~e~v~avr~a~g~~~~l~vDan-~~~--~~~~a~~~~~~~- 208 (369)
T 2p8b_A 148 EAASMIQKGYQSFKMKVGT---------------NVKEDVKRIEAVRERVGNDIAIRVDVN-QGW--KNSANTLTALRS- 208 (369)
T ss_dssp HHHHHHHTTCCEEEEECCS---------------CHHHHHHHHHHHHHHHCTTSEEEEECT-TTT--BSHHHHHHHHHT-
T ss_pred HHHHHHHcCcCEEEEEeCC---------------CHHHHHHHHHHHHHHhCCCCeEEEECC-CCC--CHHHHHHHHHHH-
Confidence 34555678999984 452 3677789999999987 4455678864 677 578888 77655
Q ss_pred HHHhCCCEEEeCCCCCc-hHHHHHHHHHc-CCceeec
Q 026125 180 LKEGGMDAIKLEGGSPS-RITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 180 ~keaGAdaVKLEGg~~~-~~~~i~~L~~~-GIPV~GH 214 (243)
+++.|.+. +|..... ...-.+.|.++ +|||++-
T Consensus 209 l~~~~i~~--iEqP~~~~d~~~~~~l~~~~~iPI~~d 243 (369)
T 2p8b_A 209 LGHLNIDW--IEQPVIADDIDAMAHIRSKTDLPLMID 243 (369)
T ss_dssp STTSCCSC--EECCBCTTCHHHHHHHHHTCCSCEEES
T ss_pred HHhCCCcE--EECCCCcccHHHHHHHHHhCCCCEEeC
Confidence 44667664 5655321 12224556653 8999986
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=83.19 E-value=8.6 Score=34.57 Aligned_cols=79 Identities=15% Similarity=0.231 Sum_probs=53.7
Q ss_pred hhCCCcEEEEecC------CHH----HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 88 HKNGEPITMVTAY------DYP----SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 88 kk~g~~ItmlTAY------D~~----sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
++.|-|+.+.++. |.. .|+++.++|.|+|-++.+ + -+| +.|+++++.|+++
T Consensus 168 ~~~GlpvIie~~~G~~~~~d~e~i~~aariA~elGAD~VKt~~t------~------e~~-------~~vv~~~~vPVv~ 228 (295)
T 3glc_A 168 MKVGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTYYV------E------KGF-------ERIVAGCPVPIVI 228 (295)
T ss_dssp HTTTCCEEEEECC----CCSHHHHHHHHHHHHHTTCSEEEEECC------T------TTH-------HHHHHTCSSCEEE
T ss_pred HHcCCEEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEEEeCCC------H------HHH-------HHHHHhCCCcEEE
Confidence 3446676655554 532 678999999999987722 0 123 4566677888665
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
.. +-..+.+++++++...+ ++||+++-+
T Consensus 229 ~G----G~~~~~~~~l~~v~~ai-~aGA~Gv~v 256 (295)
T 3glc_A 229 AG----GKKLPEREALEMCWQAI-DQGASGVDM 256 (295)
T ss_dssp EC----CSCCCHHHHHHHHHHHH-HTTCSEEEE
T ss_pred EE----CCCCCHHHHHHHHHHHH-HhCCeEEEe
Confidence 43 33236789999999999 589999866
|
| >3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=83.10 E-value=7.4 Score=35.56 Aligned_cols=106 Identities=17% Similarity=0.079 Sum_probs=60.3
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCc----cCCHHHH----HHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTL----PITLEEM----LVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTA 176 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~----~vTldeM----i~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA 176 (243)
|+-..++|.|+|=||--- +.|... +|+.+|- +-..+++++..+ ..|..| || +++.+ +.
T Consensus 55 A~~~v~~GAdIIDIGgeS-----TrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~~-vpISID----T~--~~~Va-~a- 120 (314)
T 3tr9_A 55 AEKMVDEGADILDIGGEA-----TNPFVDIKTDSPSTQIELDRLLPVIDAIKKRFP-QLISVD----TS--RPRVM-RE- 120 (314)
T ss_dssp HHHHHHTTCSEEEEECCC-----SCTTC-----CHHHHHHHHHHHHHHHHHHHHCC-SEEEEE----CS--CHHHH-HH-
T ss_pred HHHHHHCCCCEEEECCCC-----CCCCcccccCCCCHHHHHHHHHHHHHHHHhhCC-CeEEEe----CC--CHHHH-HH-
Confidence 444568899999777211 122222 5666654 344455554443 447788 56 23333 33
Q ss_pred HHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceee-ccCCcccccccccCc
Q 026125 177 VRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMG-HVGLTPQAISVLGGF 228 (243)
Q Consensus 177 ~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~G-HiGLtPQ~~~~~GGy 228 (243)
.++ +||+.|+==.|.. .+...+.+.+.|.|||- |..=+|++......|
T Consensus 121 --Al~-aGa~iINDVsg~~-~~~m~~v~a~~g~~vVlMh~~G~P~tmq~~~~y 169 (314)
T 3tr9_A 121 --AVN-TGADMINDQRALQ-LDDALTTVSALKTPVCLMHFPSETRKPGSTTHF 169 (314)
T ss_dssp --HHH-HTCCEEEETTTTC-STTHHHHHHHHTCCEEEECCCCTTCCTTSSCHH
T ss_pred --HHH-cCCCEEEECCCCC-chHHHHHHHHhCCeEEEECCCCCCccccccccc
Confidence 343 5999998433322 23445667788999886 766667765544333
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=83.08 E-value=4.9 Score=34.26 Aligned_cols=63 Identities=17% Similarity=0.300 Sum_probs=43.6
Q ss_pred HHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcC-CHHHHHHHHHHHHHHhC
Q 026125 106 VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYES-STNQAVDTAVRILKEGG 184 (243)
Q Consensus 106 ~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~-s~e~Av~nA~Rl~keaG 184 (243)
+.++++|+|+|.++.+ ..++ ..+.+++..+.|++.. |+-.. +.+++++...+++ ++|
T Consensus 173 ~~a~~~Gad~i~~~~~-------------~~~~----~l~~i~~~~~ipvva~----GGi~~~~~~~~~~~~~~~~-~~G 230 (273)
T 2qjg_A 173 RLGAELGADIVKTSYT-------------GDID----SFRDVVKGCPAPVVVA----GGPKTNTDEEFLQMIKDAM-EAG 230 (273)
T ss_dssp HHHHHTTCSEEEECCC-------------SSHH----HHHHHHHHCSSCEEEE----CCSCCSSHHHHHHHHHHHH-HHT
T ss_pred HHHHHcCCCEEEECCC-------------CCHH----HHHHHHHhCCCCEEEE----eCCCCCCHHHHHHHHHHHH-HcC
Confidence 8899999999988831 2343 3455666667775542 33322 5888888777777 589
Q ss_pred CCEEEe
Q 026125 185 MDAIKL 190 (243)
Q Consensus 185 AdaVKL 190 (243)
|++|-+
T Consensus 231 a~gv~v 236 (273)
T 2qjg_A 231 AAGVAV 236 (273)
T ss_dssp CSEEEC
T ss_pred CcEEEe
Confidence 999987
|
| >1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A* | Back alignment and structure |
|---|
Probab=83.06 E-value=8.8 Score=33.63 Aligned_cols=97 Identities=14% Similarity=0.075 Sum_probs=56.2
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHH-HHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHh
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEE-MLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTlde-Mi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~kea 183 (243)
|+-..+.|.|+|=||- |. .+++-+| |-.-.+.|....+ ..|..| || + .++++.|.+.+ .
T Consensus 31 a~~~v~~GAdiIDIg~-------g~---~~v~~~ee~~rvv~~i~~~~~-~pisID----T~--~-~~v~~aAl~a~--~ 90 (262)
T 1f6y_A 31 ARRQEEGGARALDLNV-------GP---AVQDKVSAMEWLVEVTQEVSN-LTLCLD----ST--N-IKAIEAGLKKC--K 90 (262)
T ss_dssp HHHHHHHTCSEEEEBC-------C-------CHHHHHHHHHHHHHTTCC-SEEEEE----CS--C-HHHHHHHHHHC--S
T ss_pred HHHHHHCCCcEEEECC-------CC---CCCChHHHHHHHHHHHHHhCC-CeEEEe----CC--C-HHHHHHHHhhC--C
Confidence 3445578999998874 21 2344444 5555666655333 346778 45 2 34444444433 2
Q ss_pred CCCEEE-eCCCCCchHHHHHHHHHcCCceee-ccC--Ccccc
Q 026125 184 GMDAIK-LEGGSPSRITAARGIVEAGIAVMG-HVG--LTPQA 221 (243)
Q Consensus 184 GAdaVK-LEGg~~~~~~~i~~L~~~GIPV~G-HiG--LtPQ~ 221 (243)
|++.|+ +.|+.+....+.+...+.|.||+. |.. =+|++
T Consensus 91 Ga~iINdvs~~~d~~~~~~~~~a~~~~~vvlmh~~~~G~p~t 132 (262)
T 1f6y_A 91 NRAMINSTNAEREKVEKLFPLAVEHGAALIGLTMNKTGIPKD 132 (262)
T ss_dssp SCEEEEEECSCHHHHHHHHHHHHHTTCEEEEESCCSSCSCSS
T ss_pred CCCEEEECCCCcccHHHHHHHHHHhCCcEEEEcCCCCCCCCC
Confidence 999998 777643222556777899999876 762 24654
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=83.03 E-value=3 Score=37.68 Aligned_cols=89 Identities=12% Similarity=0.210 Sum_probs=60.3
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC-CCcCCHHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG-TYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg-sY~~s~e~Av~nA~Rl~ke 182 (243)
.++.+.++|+|.|.+.|++|. .+-+++-...+++++..|. .|++ -.+.+.-.|+.|+...+ +
T Consensus 174 ~~~~~~~~Ga~~i~l~DT~G~----------~~P~~v~~lv~~l~~~~p~------~~i~~H~Hnd~GlA~AN~laAv-~ 236 (337)
T 3ble_A 174 LVEHLSKEHIERIFLPDTLGV----------LSPEETFQGVDSLIQKYPD------IHFEFHGHNDYDLSVANSLQAI-R 236 (337)
T ss_dssp HHHHHHTSCCSEEEEECTTCC----------CCHHHHHHHHHHHHHHCTT------SCEEEECBCTTSCHHHHHHHHH-H
T ss_pred HHHHHHHcCCCEEEEecCCCC----------cCHHHHHHHHHHHHHhcCC------CeEEEEecCCcchHHHHHHHHH-H
Confidence 467778899999999999876 3556666667778777642 2221 12356677999999999 5
Q ss_pred hCCCEEEeC----CC---CCchHHHHHHHHHc-CC
Q 026125 183 GGMDAIKLE----GG---SPSRITAARGIVEA-GI 209 (243)
Q Consensus 183 aGAdaVKLE----Gg---~~~~~~~i~~L~~~-GI 209 (243)
+||+.|-.- |+ ..-.++++-.|... |+
T Consensus 237 aGa~~vd~tv~GlG~~aGN~~~E~lv~~L~~~~g~ 271 (337)
T 3ble_A 237 AGVKGLHASINGLGERAGNTPLEALVTTIHDKSNS 271 (337)
T ss_dssp TTCSEEEEBGGGCSSTTCBCBHHHHHHHHHHHSSC
T ss_pred hCCCEEEEecccccccccchhHHHHHHHHHHhcCC
Confidence 899998743 21 12245666667665 54
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=83.00 E-value=10 Score=33.82 Aligned_cols=106 Identities=15% Similarity=0.104 Sum_probs=68.6
Q ss_pred HHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCE
Q 026125 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDA 187 (243)
Q Consensus 108 ae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAda 187 (243)
.-++|+|-|++..|-|=. ..+|.||-..-.+.+++.+++..|++.. |+ .|.+++++.+.... +.|||+
T Consensus 38 li~~Gv~Gl~v~GtTGE~-------~~Lt~~Er~~v~~~~v~~~grvpViaGv--g~--~~t~~ai~la~~A~-~~Gada 105 (313)
T 3dz1_A 38 YAEVGCEGVTVLGILGEA-------PKLDAAEAEAVATRFIKRAKSMQVIVGV--SA--PGFAAMRRLARLSM-DAGAAG 105 (313)
T ss_dssp HHHTTCSEEEESTGGGTG-------GGSCHHHHHHHHHHHHHHCTTSEEEEEC--CC--SSHHHHHHHHHHHH-HHTCSE
T ss_pred HHHCCCCEEEeCccCcCh-------hhCCHHHHHHHHHHHHHHcCCCcEEEec--CC--CCHHHHHHHHHHHH-HcCCCE
Confidence 446899988876555432 2478999877777777766666677764 23 47899999886655 699999
Q ss_pred EEeCCC-----CCchHHHHHHHHHc-C--Cceee-------ccCCcccccccc
Q 026125 188 IKLEGG-----SPSRITAARGIVEA-G--IAVMG-------HVGLTPQAISVL 225 (243)
Q Consensus 188 VKLEGg-----~~~~~~~i~~L~~~-G--IPV~G-------HiGLtPQ~~~~~ 225 (243)
+-+=-- .+....-.+++.++ + +||+= .+-|.|.....+
T Consensus 106 vlv~~P~~~~s~~~l~~~f~~va~a~~~~lPiilYn~P~~tg~~l~~~~~~~L 158 (313)
T 3dz1_A 106 VMIAPPPSLRTDEQITTYFRQATEAIGDDVPWVLQDYPLTLSVVMTPKVIRQI 158 (313)
T ss_dssp EEECCCTTCCSHHHHHHHHHHHHHHHCTTSCEEEEECHHHHCCCCCHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHhCCCCCcEEEEeCccccCcCCCHHHHHHH
Confidence 988422 11122334566654 5 88873 445666554443
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=82.94 E-value=6.6 Score=33.85 Aligned_cols=125 Identities=18% Similarity=0.248 Sum_probs=65.9
Q ss_pred CCcE-EEEecCCHH----HHHHHHH-cCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCC
Q 026125 91 GEPI-TMVTAYDYP----SAVHLDS-AGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGT 164 (243)
Q Consensus 91 g~~I-tmlTAYD~~----sA~iae~-AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgs 164 (243)
+.|+ +-+.+.|.. .|+.+++ +|+|.|-+.-+...+-.| .+......+.+...+++|++..+.|+++ =+.. +
T Consensus 98 ~~p~~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g-~~~~g~~~~~~~eii~~v~~~~~~pv~v-k~~~-~ 174 (311)
T 1ep3_A 98 ELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHG-GQAFGTDPEVAAALVKACKAVSKVPLYV-KLSP-N 174 (311)
T ss_dssp TSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGT-TEEGGGCHHHHHHHHHHHHHHCSSCEEE-EECS-C
T ss_pred CCcEEEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCc-hhhhcCCHHHHHHHHHHHHHhcCCCEEE-EECC-C
Confidence 4454 346666532 3445566 899988553221111111 1111124555667777887776667544 2221 1
Q ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEeCCC---------CC-------------c-----hHHHHHHHHHc-CCceeeccC
Q 026125 165 YESSTNQAVDTAVRILKEGGMDAIKLEGG---------SP-------------S-----RITAARGIVEA-GIAVMGHVG 216 (243)
Q Consensus 165 Y~~s~e~Av~nA~Rl~keaGAdaVKLEGg---------~~-------------~-----~~~~i~~L~~~-GIPV~GHiG 216 (243)
. .+.++. | +.+++.|+|+|.+.+. .. . ....++.+.+. .|||++==|
T Consensus 175 ~-~~~~~~---a-~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~~ipvia~GG 249 (311)
T 1ep3_A 175 V-TDIVPI---A-KAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGG 249 (311)
T ss_dssp S-SCSHHH---H-HHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEECSS
T ss_pred h-HHHHHH---H-HHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhcCCCEEEECC
Confidence 2 133443 2 3445799999999541 00 0 12445666554 799998777
Q ss_pred C-cccccc
Q 026125 217 L-TPQAIS 223 (243)
Q Consensus 217 L-tPQ~~~ 223 (243)
+ +|+.+.
T Consensus 250 I~~~~d~~ 257 (311)
T 1ep3_A 250 VANAQDVL 257 (311)
T ss_dssp CCSHHHHH
T ss_pred cCCHHHHH
Confidence 7 465544
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=82.81 E-value=13 Score=34.37 Aligned_cols=63 Identities=19% Similarity=0.280 Sum_probs=37.2
Q ss_pred HHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-------chHHHHHHHHHc---CCceee
Q 026125 144 CRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-------SRITAARGIVEA---GIAVMG 213 (243)
Q Consensus 144 ~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-------~~~~~i~~L~~~---GIPV~G 213 (243)
.+.|++.++.|+++-.. .++|+| .++. ++|||+|.+.+... -....+..+.++ .|||++
T Consensus 244 i~~lr~~~~~PvivKgv------~~~e~A----~~a~-~aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~~~ipVia 312 (392)
T 2nzl_A 244 IKWLRRLTSLPIVAKGI------LRGDDA----REAV-KHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFL 312 (392)
T ss_dssp HHHHC--CCSCEEEEEE------CCHHHH----HHHH-HTTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHhhCCCEEEEec------CCHHHH----HHHH-HcCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHcCCCCEEEE
Confidence 57788888889877532 356765 4555 79999999954211 122333444433 588887
Q ss_pred ccCC
Q 026125 214 HVGL 217 (243)
Q Consensus 214 HiGL 217 (243)
==|+
T Consensus 313 ~GGI 316 (392)
T 2nzl_A 313 DGGV 316 (392)
T ss_dssp CSSC
T ss_pred ECCC
Confidence 5443
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=82.75 E-value=14 Score=32.33 Aligned_cols=115 Identities=15% Similarity=0.113 Sum_probs=70.9
Q ss_pred EEEEecCCHHHHHHHHHcCCCEE-EeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCC-CCCCcCC--H
Q 026125 94 ITMVTAYDYPSAVHLDSAGIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP-FGTYESS--T 169 (243)
Q Consensus 94 ItmlTAYD~~sA~iae~AGiDiI-LVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmP-fgsY~~s--~ 169 (243)
+.-++++++.+|..|+++|.|=| |+.+ + ..| .+--++..|-.-... ++..+.|+.+-==| .|+|--| .
T Consensus 3 llEvc~~s~~~a~~A~~~GAdRIELc~~-L---~~G---GlTPS~g~i~~~~~~-~~~~~ipV~vMIRPR~GdF~Ys~~E 74 (224)
T 2bdq_A 3 LREFCAENLTDLTRLDKAIISRVELCDN-L---AVG---GTTPSYGVIKEANQY-LHEKGISVAVMIRPRGGNFVYNDLE 74 (224)
T ss_dssp EEEEEEETTTTGGGCCTTTCCEEEEEBC-G---GGT---CBCCCHHHHHHHHHH-HHHTTCEEEEECCSSSSCSCCCHHH
T ss_pred eEEEEECCHHHHHHHHHcCCCEEEEcCC-c---ccC---CcCCCHHHHHHHHHh-hhhcCCceEEEECCCCCCCcCCHHH
Confidence 34578999999999999999977 8863 2 112 222344444221101 25556665442224 3333334 3
Q ss_pred HHHHHHHHHHHHHhCCCEEEe----CCCCCchHHHHHHHHH--cCCceeeccCC
Q 026125 170 NQAVDTAVRILKEGGMDAIKL----EGGSPSRITAARGIVE--AGIAVMGHVGL 217 (243)
Q Consensus 170 e~Av~nA~Rl~keaGAdaVKL----EGg~~~~~~~i~~L~~--~GIPV~GHiGL 217 (243)
-+.+..-++.+++.|||+|-+ ++|.-. .+..+.|++ .|.||.=|=-+
T Consensus 75 ~~~M~~Di~~~~~~GadGvV~G~Lt~dg~iD-~~~~~~Li~~a~~~~vTFHRAF 127 (224)
T 2bdq_A 75 LRIMEEDILRAVELESDALVLGILTSNNHID-TEAIEQLLPATQGLPLVFHMAF 127 (224)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCBCTTSSBC-HHHHHHHHHHHTTCCEEECGGG
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeECCCCCcC-HHHHHHHHHHhCCCeEEEECch
Confidence 468888889999999999988 666432 333566653 37888777555
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=82.74 E-value=4 Score=37.12 Aligned_cols=61 Identities=11% Similarity=0.098 Sum_probs=42.6
Q ss_pred HHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeec
Q 026125 144 CRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGH 214 (243)
Q Consensus 144 ~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GH 214 (243)
.+.+++.+ +.| |++|--+ +++++ .+++++..+|+|.+-||-.....+++.....||+||-|
T Consensus 235 ~~~l~~~~~~iP-Ia~dE~~-----~~~~~----~~~i~~~~~d~v~ikGGit~a~~i~~~A~~~gi~~~~~ 296 (389)
T 2oz8_A 235 LRTLRHAVTWTQ-INSGEYL-----DLQGK----RLLLEAHAADILNVHGQVTDVMRIGWLAAELGIPISIG 296 (389)
T ss_dssp HHHHHHHCCSSE-EEECTTC-----CHHHH----HHHHHTTCCSEEEECSCHHHHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHhhCCCCC-EEeCCCC-----CHHHH----HHHHHcCCCCEEEECcCHHHHHHHHHHHHHcCCeEeec
Confidence 35566666 555 6777433 45555 67777777999999977555556666666789999999
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=82.73 E-value=13 Score=32.70 Aligned_cols=107 Identities=18% Similarity=0.170 Sum_probs=65.2
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEee
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGD 159 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaD 159 (243)
+.+|.+..+.-...+++.+.|...+..+.++|+|+|.|+.. ..++..+.++. ++.+++..+ ...+|+-
T Consensus 151 l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~Gad~IGv~~r-------~l~~~~~dl~~----~~~l~~~v~~~~pvVae 219 (272)
T 3qja_A 151 LVSMLDRTESLGMTALVEVHTEQEADRALKAGAKVIGVNAR-------DLMTLDVDRDC----FARIAPGLPSSVIRIAE 219 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEEESB-------CTTTCCBCTTH----HHHHGGGSCTTSEEEEE
T ss_pred HHHHHHHHHHCCCcEEEEcCCHHHHHHHHHCCCCEEEECCC-------cccccccCHHH----HHHHHHhCcccCEEEEE
Confidence 33444433333455788999999999999999999988721 11334455543 345666554 3345664
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC----CchHHHHHHHHHcC
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS----PSRITAARGIVEAG 208 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~----~~~~~~i~~L~~~G 208 (243)
+ +. .+++++ .++. +.||++|-+ |.. ......++.|.+++
T Consensus 220 --g-GI-~t~edv----~~l~-~~GadgvlV-Gsal~~a~dp~~~~~~l~~~~ 262 (272)
T 3qja_A 220 --S-GV-RGTADL----LAYA-GAGADAVLV-GEGLVTSGDPRAAVADLVTAG 262 (272)
T ss_dssp --S-CC-CSHHHH----HHHH-HTTCSEEEE-CHHHHTCSCHHHHHHHHHTTT
T ss_pred --C-CC-CCHHHH----HHHH-HcCCCEEEE-cHHHhCCCCHHHHHHHHHhhh
Confidence 2 34 367776 4555 689999987 331 12334567788765
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=82.71 E-value=9.2 Score=34.37 Aligned_cols=95 Identities=15% Similarity=0.020 Sum_probs=54.7
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc---CCCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA---KRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga---~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
++.-+-+.|+|.|.+- ..+| +-..++++..+++|++.+ ..++++- .+.|.--...++.+..+.|+.
T Consensus 130 ~ve~Av~~GAdaV~~~-----i~~G-----s~~~~~~l~~i~~v~~~a~~~GlpvIie-~~~G~~~~~d~e~i~~aariA 198 (295)
T 3glc_A 130 SMDDAVRLNSCAVAAQ-----VYIG-----SEYEHQSIKNIIQLVDAGMKVGMPTMAV-TGVGKDMVRDQRYFSLATRIA 198 (295)
T ss_dssp CHHHHHHTTCSEEEEE-----ECTT-----STTHHHHHHHHHHHHHHHHTTTCCEEEE-ECC----CCSHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEE-----EECC-----CCcHHHHHHHHHHHHHHHHHcCCEEEEE-CCCCCccCCCHHHHHHHHHHH
Confidence 6777779999988542 1223 223455655555554433 4565543 344322123356667677888
Q ss_pred HHhCCCEEEeCCCCCchHHHHHHHHH-cCCceee
Q 026125 181 KEGGMDAIKLEGGSPSRITAARGIVE-AGIAVMG 213 (243)
Q Consensus 181 keaGAdaVKLEGg~~~~~~~i~~L~~-~GIPV~G 213 (243)
.|.|||.||..-..+ . .+.+++ ..+||+.
T Consensus 199 ~elGAD~VKt~~t~e---~-~~~vv~~~~vPVv~ 228 (295)
T 3glc_A 199 AEMGAQIIKTYYVEK---G-FERIVAGCPVPIVI 228 (295)
T ss_dssp HHTTCSEEEEECCTT---T-HHHHHHTCSSCEEE
T ss_pred HHhCCCEEEeCCCHH---H-HHHHHHhCCCcEEE
Confidence 899999999974322 2 455664 4588874
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=82.61 E-value=5.5 Score=33.34 Aligned_cols=111 Identities=20% Similarity=0.172 Sum_probs=64.7
Q ss_pred EEEEecCCHH------HHHHHHHcCCCEEEeC----cch--hhhhc-----cCCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 94 ITMVTAYDYP------SAVHLDSAGIDICLVG----DSA--AMVVH-----GHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 94 ItmlTAYD~~------sA~iae~AGiDiILVG----DSl--gmv~l-----G~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
+.-+++-|.. .|+.++++ +|.|-++ |.. |.... ... ..++++......++|++.++.|+.
T Consensus 8 ~~~i~~~~~~~~~~~~~a~~~~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~--~g~~~~~~~~~i~~i~~~~~~pv~ 84 (248)
T 1geq_A 8 IPYLTAGDPDKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALK--NGFKLREAFWIVKEFRRHSSTPIV 84 (248)
T ss_dssp EEEEETTSSCHHHHHHHHHHHGGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHH--TTCCHHHHHHHHHHHHTTCCCCEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCCCEE
Confidence 4456676763 56777788 9999766 111 11000 000 124677788888999988776644
Q ss_pred EeeCCCCCCcCCH------HHHHHHHHHHHHHhCCCEEEeCCCC-CchHHHHHHHHHcCCceeeccCCcc
Q 026125 157 VGDLPFGTYESST------NQAVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVMGHVGLTP 219 (243)
Q Consensus 157 VaDmPfgsY~~s~------e~Av~nA~Rl~keaGAdaVKLEGg~-~~~~~~i~~L~~~GIPV~GHiGLtP 219 (243)
+ +.| .++ ++. .+.+.++|||+|.+-+-. +....+++.+.+.|+.+.= ++.|
T Consensus 85 ~-----~~~-~~~~~~~~~~~~----~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~g~~~~~--~i~~ 142 (248)
T 1geq_A 85 L-----MTY-YNPIYRAGVRNF----LAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVF--LAAP 142 (248)
T ss_dssp E-----EEC-HHHHHHHCHHHH----HHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEE--EECT
T ss_pred E-----Eec-cchhhhcCHHHH----HHHHHHCCCCEEEECCCChhhHHHHHHHHHHhCCCeEE--EECC
Confidence 3 233 133 444 344457999999995432 1233556667778887653 4444
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=82.56 E-value=10 Score=33.60 Aligned_cols=129 Identities=12% Similarity=0.052 Sum_probs=73.6
Q ss_pred HHHHHHhhhCCCcEEEEecC---CHHHHH-HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCC--C
Q 026125 81 LTHLRQKHKNGEPITMVTAY---DYPSAV-HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR--P 154 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAY---D~~sA~-iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~--~ 154 (243)
+..+.+. ..+-++++++-. |.-.|. ....+|+|.|-+-+|.+-...=+ -...|.+|.+...+.+.+.+.. .
T Consensus 59 v~~i~~~-~~~~~i~~l~~~~~~di~~a~~~~~~ag~~~v~i~~~~Sd~~~~~--nl~~s~~e~l~~~~~~v~~a~~~g~ 135 (293)
T 3ewb_X 59 VKAIAKA-IKHCSVTGLARCVEGDIDRAEEALKDAVSPQIHIFLATSDVHMEY--KLKMSRAEVLASIKHHISYARQKFD 135 (293)
T ss_dssp HHHHHHH-CCSSEEEEEEESSHHHHHHHHHHHTTCSSEEEEEEEECSHHHHHH--TTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHh-cCCCEEEEEecCCHHHHHHHHHHHhhcCCCEEEEEecCcHHHHHH--HhCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3444443 255677777643 221111 12347999886544443221100 1245778877666655443221 2
Q ss_pred cEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc-----CCceeec
Q 026125 155 LLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-----GIAVMGH 214 (243)
Q Consensus 155 fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~-----GIPV~GH 214 (243)
.+..++++.+ ..+++..++.+.++. +.||+.|.|-|-.. ....++++|.+. ++|+--|
T Consensus 136 ~v~~~~~d~~-~~~~~~~~~~~~~~~-~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~~~l~~H 203 (293)
T 3ewb_X 136 VVQFSPEDAT-RSDRAFLIEAVQTAI-DAGATVINIPDTVGYTNPTEFGQLFQDLRREIKQFDDIIFASH 203 (293)
T ss_dssp CEEEEEETGG-GSCHHHHHHHHHHHH-HTTCCEEEEECSSSCCCHHHHHHHHHHHHHHCTTGGGSEEEEE
T ss_pred EEEEEeccCC-CCCHHHHHHHHHHHH-HcCCCEEEecCCCCCCCHHHHHHHHHHHHHhcCCccCceEEEE
Confidence 3557778744 478888888887776 69999999998632 234556666553 2556555
|
| >2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD, TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A {Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A | Back alignment and structure |
|---|
Probab=82.54 E-value=6.4 Score=34.24 Aligned_cols=114 Identities=14% Similarity=0.148 Sum_probs=65.5
Q ss_pred ecCCHHH-HHHHHHcCCCEE-EeCcchhhhhccCCCCccCCHH---HHHHHHHHHHcccCCCcEE-eeCCCCCCcCCHHH
Q 026125 98 TAYDYPS-AVHLDSAGIDIC-LVGDSAAMVVHGHDTTLPITLE---EMLVHCRAVARGAKRPLLV-GDLPFGTYESSTNQ 171 (243)
Q Consensus 98 TAYD~~s-A~iae~AGiDiI-LVGDSlgmv~lG~~dT~~vTld---eMi~h~~aV~Rga~~~fvV-aDmPfgsY~~s~e~ 171 (243)
..||... -..++++|||.. +++ +.+ .++|......+.+ ..-..+..+++..|.-|+- +-+|. .+++.
T Consensus 56 ~~~~~~~~l~~m~~~GV~~~V~~~-~~~--~~~~~~~~~~~~~~~~~~N~~~~~~~~~~p~r~~~~~~l~~----~~~~~ 128 (334)
T 2hbv_A 56 ALWDPAFRIEEMDAQGVDVQVTCA-TPV--MFGYTWEANKAAQWAERMNDFALEFAAHNPQRIKVLAQVPL----QDLDL 128 (334)
T ss_dssp GGTCHHHHHHHHHHHTCSEEEEEE-CGG--GCCTTSCHHHHHHHHHHHHHHHHHHHTTCTTTEEECBCCCT----TSHHH
T ss_pred ccCCHHHHHHHHHHCCCCEEEECC-Cch--hccCCCCHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEecCc----cCHHH
Confidence 3566532 234678999965 453 222 1222211000000 1112334455666666654 44544 14567
Q ss_pred HHHHHHHHHHHhCCCEEEeCCC-------CCchHHHHHHHHHcCCceeeccCCcc
Q 026125 172 AVDTAVRILKEGGMDAIKLEGG-------SPSRITAARGIVEAGIAVMGHVGLTP 219 (243)
Q Consensus 172 Av~nA~Rl~keaGAdaVKLEGg-------~~~~~~~i~~L~~~GIPV~GHiGLtP 219 (243)
+++...|++ +.|+.+|++-.. .+....+.+.+.+.|+||+=|.+-.+
T Consensus 129 a~~el~~~~-~~g~~Gv~l~~~~~~~~l~d~~~~p~~~~~~e~~lpv~iH~~~~~ 182 (334)
T 2hbv_A 129 ACKEASRAV-AAGHLGIQIGNHLGDKDLDDATLEAFLTHCANEDIPILVHPWDMM 182 (334)
T ss_dssp HHHHHHHHH-HHTCCCEEEESCBTTBCTTSHHHHHHHHHHHHTTCCEEEECCSCS
T ss_pred HHHHHHHHH-HcCCeEEEECCCCCCCCCCcHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 777777888 689999988421 12345678999999999999998654
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=82.53 E-value=17 Score=33.12 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=59.4
Q ss_pred HHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHh
Q 026125 107 HLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (243)
Q Consensus 107 iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~kea 183 (243)
.+.+.|++.+= +|. .+++-+..+++||++. +..-|.+|.. ++| +.++|++.+.++ ++.
T Consensus 161 ~~~~~G~~~iKiKvG~---------------~~~~d~~~v~avR~a~g~d~~l~vDan-~~~--~~~~A~~~~~~l-~~~ 221 (389)
T 3ozy_A 161 GWVEQGFTAAKLKVGR---------------APRKDAANLRAMRQRVGADVEILVDAN-QSL--GRHDALAMLRIL-DEA 221 (389)
T ss_dssp HHHHTTCSEEEEECCS---------------CHHHHHHHHHHHHHHHCTTSEEEEECT-TCC--CHHHHHHHHHHH-HHT
T ss_pred HHHHCCCCEEeeccCC---------------CHHHHHHHHHHHHHHcCCCceEEEECC-CCc--CHHHHHHHHHHH-Hhc
Confidence 34457999983 552 5788899999999987 4555779975 577 689999887665 467
Q ss_pred CCCEEEeCCCCC-chHHHHHHHH-H-cCCceeec
Q 026125 184 GMDAIKLEGGSP-SRITAARGIV-E-AGIAVMGH 214 (243)
Q Consensus 184 GAdaVKLEGg~~-~~~~~i~~L~-~-~GIPV~GH 214 (243)
|.+. +|.... ....-.+.|. + .+|||++=
T Consensus 222 ~i~~--iEqP~~~~d~~~~~~l~~~~~~iPIa~d 253 (389)
T 3ozy_A 222 GCYW--FEEPLSIDDIEGHRILRAQGTPVRIATG 253 (389)
T ss_dssp TCSE--EESCSCTTCHHHHHHHHTTCCSSEEEEC
T ss_pred CCCE--EECCCCcccHHHHHHHHhcCCCCCEEeC
Confidence 7665 465532 1122356676 4 58999974
|
| >4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A* | Back alignment and structure |
|---|
Probab=82.53 E-value=15 Score=32.82 Aligned_cols=98 Identities=22% Similarity=0.172 Sum_probs=62.2
Q ss_pred HHHHHcCCCEEEeCc-chhhhhccCCCCccCCHHHHHHHHHHHHccc--CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHH
Q 026125 106 VHLDSAGIDICLVGD-SAAMVVHGHDTTLPITLEEMLVHCRAVARGA--KRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 106 ~iae~AGiDiILVGD-Slgmv~lG~~dT~~vTldeMi~h~~aV~Rga--~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ke 182 (243)
.-.-+.|.|+|=||. |- .|...+|+.+|=+..+.-|.+.. ....|..| +|. ++-+ .+.+ +
T Consensus 37 ~~m~~~GAdiIDIGgeST------RPga~~vs~eeE~~Rv~pvi~~l~~~~v~iSID----T~~--~~Va----~~al-~ 99 (270)
T 4hb7_A 37 KAMIDEGADIIDVGGVST------RPGHEMVTLEEELNRVLPVVEAIVGFDVKISVD----TFR--SEVA----EACL-K 99 (270)
T ss_dssp HHHHHTTCSEEEEESCCC------STTCCCCCHHHHHHHHHHHHHHHTTSSSEEEEE----CSC--HHHH----HHHH-H
T ss_pred HHHHHCCCCEEEECCccC------CCCCCCCchHHHHHHHHHHHHHhhcCCCeEEEE----CCC--HHHH----HHHH-H
Confidence 334567999997772 21 35557899888665554444332 34456688 573 4433 3345 5
Q ss_pred hCCCEEE-eCCCCCchHHHHHHHHHcCCceee-ccCCcccc
Q 026125 183 GGMDAIK-LEGGSPSRITAARGIVEAGIAVMG-HVGLTPQA 221 (243)
Q Consensus 183 aGAdaVK-LEGg~~~~~~~i~~L~~~GIPV~G-HiGLtPQ~ 221 (243)
+||+.|+ +.||... +...+.+.+.|.|||= |-.=+||.
T Consensus 100 aGa~iINDVs~g~~d-~~m~~~va~~~~~~vlMH~~~~p~~ 139 (270)
T 4hb7_A 100 LGVDMINDQWAGLYD-HRMFQIVAKYDAEIILMHNGNGNRD 139 (270)
T ss_dssp HTCCEEEETTTTSSC-THHHHHHHHTTCEEEEECCCSSCCS
T ss_pred hccceeccccccccc-hhHHHHHHHcCCCeEEeccccCCcc
Confidence 8999999 5676532 4556778899999874 66556764
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=82.47 E-value=8.8 Score=34.92 Aligned_cols=96 Identities=17% Similarity=0.119 Sum_probs=60.8
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCH-HHHHHHHHHHHccc-CCCcEEeeCCCCCCcC-CHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITL-EEMLVHCRAVARGA-KRPLLVGDLPFGTYES-STNQAVDTAVRIL 180 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTl-deMi~h~~aV~Rga-~~~fvVaDmPfgsY~~-s~e~Av~nA~Rl~ 180 (243)
.|+-+.++|+|.+=+=-| -.|- ++ ++.+..+++|+++. +..-|..|.- ++| . +.+++++.+.+ +
T Consensus 152 ~a~~~~~~Gf~~iKik~s----pvG~------~~~~~~~e~v~avr~a~G~d~~l~vDan-~~~-~~~~~~a~~~~~~-l 218 (401)
T 2hzg_A 152 RARAARRDGFAAVKFGWG----PIGR------GTVAADADQIMAAREGLGPDGDLMVDVG-QIF-GEDVEAAAARLPT-L 218 (401)
T ss_dssp HHHHHHHTTCSEEEEEST----TTTS------SCHHHHHHHHHHHHHHHCSSSEEEEECT-TTT-TTCHHHHHTTHHH-H
T ss_pred HHHHHHHhCCCeEEEcCC----CCCC------CHHHHHHHHHHHHHHHhCCCCeEEEECC-CCC-CCCHHHHHHHHHH-H
Confidence 345556789999843100 0121 34 66688899999977 3455678874 466 2 68999998766 4
Q ss_pred HHhCCCEEEeCCCCC-chHHHHHHHHH--cCCceeec
Q 026125 181 KEGGMDAIKLEGGSP-SRITAARGIVE--AGIAVMGH 214 (243)
Q Consensus 181 keaGAdaVKLEGg~~-~~~~~i~~L~~--~GIPV~GH 214 (243)
++.|.+. +|.... ....-.+.|.+ .+|||++=
T Consensus 219 ~~~~i~~--iEqP~~~~d~~~~~~l~~~~~~iPI~~d 253 (401)
T 2hzg_A 219 DAAGVLW--LEEPFDAGALAAHAALAGRGARVRIAGG 253 (401)
T ss_dssp HHTTCSE--EECCSCTTCHHHHHHHHTTCCSSEEEEC
T ss_pred HhcCCCE--EECCCCccCHHHHHHHHhhCCCCCEEec
Confidence 5677775 576532 11233566776 48999975
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=82.43 E-value=8.4 Score=35.47 Aligned_cols=133 Identities=8% Similarity=-0.026 Sum_probs=73.0
Q ss_pred CCCCHHHHH-HhhhCCCcEEEEecCCH-HHHHHHH-HcCCCEEEeCcchh----hhhc---cC--CCC-ccCCHH----H
Q 026125 77 QRVTLTHLR-QKHKNGEPITMVTAYDY-PSAVHLD-SAGIDICLVGDSAA----MVVH---GH--DTT-LPITLE----E 139 (243)
Q Consensus 77 ~~~tv~~Lr-~~kk~g~~ItmlTAYD~-~sA~iae-~AGiDiILVGDSlg----mv~l---G~--~dT-~~vTld----e 139 (243)
+.+|..++. +..+ || ..|+.+. ++|||.|=+--+-| ..+- .. .|. +..+++ -
T Consensus 161 r~lt~~eI~~~~i~-----------~f~~AA~~a~~~aGfDgVEih~a~GYLl~QFlsp~~N~R~~D~yGG~slenR~r~ 229 (379)
T 3aty_A 161 EELTDDEVRDGIIP-----------LFVEGAKNAIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQL 229 (379)
T ss_dssp EECCHHHHHHTHHH-----------HHHHHHHHHHHTSCCSEEEEEECTTSHHHHHHSTTTCCCCSSTTCTTSHHHHHHH
T ss_pred ccCCHHHHhHHHHH-----------HHHHHHHHHHHhcCCCEEEEcCcCchHHhhccCCCCCccccCCCCccChhhhHHH
Confidence 568888888 6643 33 3567778 99999994311110 0000 00 111 111443 3
Q ss_pred HHHHHHHHHcccCCCcEEeeCCC------CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC----chHHHHHHHHHc-C
Q 026125 140 MLVHCRAVARGAKRPLLVGDLPF------GTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP----SRITAARGIVEA-G 208 (243)
Q Consensus 140 Mi~h~~aV~Rga~~~fvVaDmPf------gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~----~~~~~i~~L~~~-G 208 (243)
+++.+++|++..+.-.|..-+.- ..-+.+.+++++.+.++. +.|+|.|.+-++.. .... ++.+.+. +
T Consensus 230 ~~eiv~aVr~avg~~~v~vRis~~~~~~~~~~~~~~~~~~~la~~l~-~~Gvd~i~v~~~~~~~~~~~~~-~~~ir~~~~ 307 (379)
T 3aty_A 230 IYDVTKSVCDAVGSDRVGLRISPLNGVHGMIDSNPEALTKHLCKKIE-PLSLAYLHYLRGDMVNQQIGDV-VAWVRGSYS 307 (379)
T ss_dssp HHHHHHHHHHHHCGGGEEEEECTTCCGGGCCCSCHHHHHHHHHHHHG-GGCCSEEEEECSCTTSCCCCCH-HHHHHTTCC
T ss_pred HHHHHHHHHHhcCCCeEEEEECcccccccCCCCCCHHHHHHHHHHHH-HhCCCEEEEcCCCcCCCCccHH-HHHHHHHCC
Confidence 56777888887763234542111 001125677877776554 78999999987531 0113 3444433 6
Q ss_pred CceeeccCCccccc
Q 026125 209 IAVMGHVGLTPQAI 222 (243)
Q Consensus 209 IPV~GHiGLtPQ~~ 222 (243)
|||++==|++|+.+
T Consensus 308 iPvi~~G~it~~~a 321 (379)
T 3aty_A 308 GVKISNLRYDFEEA 321 (379)
T ss_dssp SCEEEESSCCHHHH
T ss_pred CcEEEECCCCHHHH
Confidence 89987656665544
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=82.37 E-value=12 Score=33.37 Aligned_cols=89 Identities=21% Similarity=0.314 Sum_probs=58.1
Q ss_pred HHHHH-cCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 106 VHLDS-AGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 106 ~iae~-AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
+-+.+ +|++.+= +|+ + ++++-+..+++|+++.+ ..-+..|.- ++| +.+++++.+.+ ++
T Consensus 151 ~~~~~~~Gf~~iKik~g~---------~-----~~~~~~e~v~avr~a~g~~~~l~vDan-~~~--~~~~a~~~~~~-l~ 212 (370)
T 1nu5_A 151 LEMIETRRHNRFKVKLGA---------R-----TPAQDLEHIRSIVKAVGDRASVRVDVN-QGW--DEQTASIWIPR-LE 212 (370)
T ss_dssp HHHHHTTSCSEEEEECSS---------S-----CHHHHHHHHHHHHHHHGGGCEEEEECT-TCC--CHHHHHHHHHH-HH
T ss_pred HHHHHhCCccEEEEecCC---------C-----ChHHHHHHHHHHHHhcCCCCEEEEECC-CCC--CHHHHHHHHHH-HH
Confidence 33445 8999984 443 1 35677888999998764 444678864 577 78999998765 55
Q ss_pred HhCCCEEEeCCCCC-chHHHHHHHHH-cCCceeec
Q 026125 182 EGGMDAIKLEGGSP-SRITAARGIVE-AGIAVMGH 214 (243)
Q Consensus 182 eaGAdaVKLEGg~~-~~~~~i~~L~~-~GIPV~GH 214 (243)
+.|.+. +|.... ....-.+.|.+ .+|||++-
T Consensus 213 ~~~i~~--iEqP~~~~~~~~~~~l~~~~~ipIa~d 245 (370)
T 1nu5_A 213 EAGVEL--VEQPVPRANFGALRRLTEQNGVAILAD 245 (370)
T ss_dssp HHTCCE--EECCSCTTCHHHHHHHHHHCSSEEEES
T ss_pred hcCcce--EeCCCCcccHHHHHHHHHhCCCCEEeC
Confidence 677764 676531 11222455554 48999975
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=82.23 E-value=15 Score=32.65 Aligned_cols=110 Identities=15% Similarity=0.163 Sum_probs=71.3
Q ss_pred HHHhhhCCCcEEE---EecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 84 LRQKHKNGEPITM---VTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 84 Lr~~kk~g~~Itm---lTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
|.+.+.-.-||.. -+.-|...|..+.++|.--++.. ..++.+++....+.+++.++.||- +++
T Consensus 19 ~~~~l~~~~Pii~apM~gvs~~~la~av~~aGglG~i~~-------------~~~~~~~l~~~i~~i~~~~~~p~g-Vnl 84 (326)
T 3bo9_A 19 VTDLLEIEHPILMGGMAWAGTPTLAAAVSEAGGLGIIGS-------------GAMKPDDLRKAISELRQKTDKPFG-VNI 84 (326)
T ss_dssp HHHHHTCSSSEEECCCTTTSCHHHHHHHHHTTSBEEEEC-------------TTCCHHHHHHHHHHHHTTCSSCEE-EEE
T ss_pred hHHhcCCCCCEEECCCCCCCCHHHHHHHHhCCCcEEeCC-------------CCCCHHHHHHHHHHHHHhcCCCEE-EEE
Confidence 3344444567653 35568888999999985433321 125788888888888887766653 333
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeecc
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHV 215 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHi 215 (243)
-. ...+.++. .+.+.+.|++.|.+-++.. ..+++.+.+.|+||+.-+
T Consensus 85 ~~--~~~~~~~~----~~~~~~~g~d~V~l~~g~p--~~~~~~l~~~g~~v~~~v 131 (326)
T 3bo9_A 85 IL--VSPWADDL----VKVCIEEKVPVVTFGAGNP--TKYIRELKENGTKVIPVV 131 (326)
T ss_dssp ET--TSTTHHHH----HHHHHHTTCSEEEEESSCC--HHHHHHHHHTTCEEEEEE
T ss_pred ec--cCCCHHHH----HHHHHHCCCCEEEECCCCc--HHHHHHHHHcCCcEEEEc
Confidence 21 11233444 3445578999999977754 566889999999998643
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=81.91 E-value=10 Score=34.51 Aligned_cols=43 Identities=14% Similarity=0.285 Sum_probs=27.9
Q ss_pred HHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 026125 139 EMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (243)
Q Consensus 139 eMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEG 192 (243)
+.+...+.+++.. +.++++.+ - .++++| .+++ ++|||+|.+..
T Consensus 147 ~~~~~i~~lr~~~~~~~vi~g~-----v-~t~e~A----~~a~-~aGaD~I~v~~ 190 (351)
T 2c6q_A 147 HFVEFVKDVRKRFPQHTIMAGN-----V-VTGEMV----EELI-LSGADIIKVGI 190 (351)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEE-----E-CSHHHH----HHHH-HTTCSEEEECS
T ss_pred HHHHHHHHHHHhcCCCeEEEEe-----C-CCHHHH----HHHH-HhCCCEEEECC
Confidence 3456667787776 44544443 2 467777 4555 69999998853
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=81.86 E-value=6.1 Score=35.70 Aligned_cols=92 Identities=18% Similarity=0.229 Sum_probs=59.6
Q ss_pred cCCHHHH----HHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHH
Q 026125 99 AYDYPSA----VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVD 174 (243)
Q Consensus 99 AYD~~sA----~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~ 174 (243)
.||...| +.+++.|+|.|= +.+ .+-. +...+.+++.++.| |++|=-+ .+++++
T Consensus 200 ~~~~~~a~~~~~~l~~~~i~~iE--qP~----------~~~~----~~~~~~l~~~~~iP-I~~de~i----~~~~~~-- 256 (384)
T 2pgw_A 200 GWSVHDAINMCRKLEKYDIEFIE--QPT----------VSWS----IPAMAHVREKVGIP-IVADQAA----FTLYDV-- 256 (384)
T ss_dssp CCCHHHHHHHHHHHGGGCCSEEE--CCS----------CTTC----HHHHHHHHHHCSSC-EEESTTC----CSHHHH--
T ss_pred CCCHHHHHHHHHHHHhcCCCEEe--CCC----------Chhh----HHHHHHHHhhCCCC-EEEeCCc----CCHHHH--
Confidence 4665544 556777887652 221 0112 34445677777666 6677433 366766
Q ss_pred HHHHHHHHhCCCEEEeC----CCCCchHHHHHHHHHcCCceeecc
Q 026125 175 TAVRILKEGGMDAIKLE----GGSPSRITAARGIVEAGIAVMGHV 215 (243)
Q Consensus 175 nA~Rl~keaGAdaVKLE----Gg~~~~~~~i~~L~~~GIPV~GHi 215 (243)
.+++++..+|.|.+- ||-.....+++.....||+||-|-
T Consensus 257 --~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~ 299 (384)
T 2pgw_A 257 --YEICRQRAADMICIGPREIGGIQPMMKAAAVAEAAGLKICIHS 299 (384)
T ss_dssp --HHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCCEEECC
T ss_pred --HHHHHcCCCCEEEEcchhhCCHHHHHHHHHHHHHCCCeEeecc
Confidence 678877789999985 675555566676778999999994
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=81.63 E-value=2.6 Score=37.69 Aligned_cols=91 Identities=18% Similarity=0.238 Sum_probs=57.8
Q ss_pred cCCHHHH----HHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHH
Q 026125 99 AYDYPSA----VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVD 174 (243)
Q Consensus 99 AYD~~sA----~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~ 174 (243)
.||...| +.+++.|+|.| -+.+ .+-. +...+.+++.++.| |++|=-+ .+++++
T Consensus 199 ~~~~~~a~~~~~~l~~~~i~~i--E~P~----------~~~~----~~~~~~l~~~~~iP-I~~de~~----~~~~~~-- 255 (359)
T 1mdl_A 199 SLDVPAAIKRSQALQQEGVTWI--EEPT----------LQHD----YEGHQRIQSKLNVP-VQMGENW----LGPEEM-- 255 (359)
T ss_dssp CSCHHHHHHHHHHHHHHTCSCE--ECCS----------CTTC----HHHHHHHHHTCSSC-EEECTTC----CSHHHH--
T ss_pred CCCHHHHHHHHHHHHHhCCCeE--ECCC----------Chhh----HHHHHHHHHhCCCC-EEeCCCC----CCHHHH--
Confidence 4776544 45667788765 2221 0112 33445677777766 6777433 356666
Q ss_pred HHHHHHHHhCCCEEEeC----CCCCchHHHHHHHHHcCCceeec
Q 026125 175 TAVRILKEGGMDAIKLE----GGSPSRITAARGIVEAGIAVMGH 214 (243)
Q Consensus 175 nA~Rl~keaGAdaVKLE----Gg~~~~~~~i~~L~~~GIPV~GH 214 (243)
.+++++.++|+|.+- ||-.....+++.....||+||-|
T Consensus 256 --~~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~A~~~g~~~~~~ 297 (359)
T 1mdl_A 256 --FKALSIGACRLAMPDAMKIGGVTGWIRASALAQQFGIPMSSH 297 (359)
T ss_dssp --HHHHHTTCCSEECCBTTTTTHHHHHHHHHHHHHHTTCCBCCB
T ss_pred --HHHHHcCCCCEEeecchhhCCHHHHHHHHHHHHHcCCeEeec
Confidence 677877789999886 55444456566667899999999
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=81.60 E-value=3 Score=37.57 Aligned_cols=109 Identities=12% Similarity=0.058 Sum_probs=58.6
Q ss_pred HHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeC-----cchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 83 HLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVG-----DSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 83 ~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVG-----DSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
-|.+|.|+| +.+..-+...|+..+++|.|.|.+= |--. ..|.. -..+ ....++|++.+..|++.
T Consensus 15 ~~~~~~kgg---v~~d~~~~e~A~~ye~~GA~~lsvLe~~~~Di~~--~~g~~--R~~~----~~~i~~i~~~v~iPvl~ 83 (297)
T 4adt_A 15 GWCEMLKGG---VIMDVKNVEQAKIAEKAGAIGVMILENIPSELRN--TDGVA--RSVD----PLKIEEIRKCISINVLA 83 (297)
T ss_dssp HHHHTTTTC---EEEEESSHHHHHHHHHHTCSEEEECCCCC-------CCCCC--CCCC----HHHHHHHHTTCCSEEEE
T ss_pred hHHHHhcCC---cccCCCcHHHHHHHHHcCCCEEEEecCCCCcchh--cCCcc--cCCC----HHHHHHHHHhcCCCEEE
Confidence 366676554 4567778899999999999988542 2110 01100 0012 34556788888888654
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHH--cCCceee
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE--AGIAVMG 213 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~--~GIPV~G 213 (243)
- .-. .| .+++ +.+.++|||+|-...+.. ..++++++.+ .|++|+.
T Consensus 84 k-~~i-~~---ide~-----qil~aaGAD~Id~s~~~~-~~~li~~i~~~~~g~~vvv 130 (297)
T 4adt_A 84 K-VRI-GH---FVEA-----QILEELKVDMLDESEVLT-MADEYNHINKHKFKTPFVC 130 (297)
T ss_dssp E-EET-TC---HHHH-----HHHHHTTCSEEEEETTSC-CSCSSCCCCGGGCSSCEEE
T ss_pred e-ccC-Cc---HHHH-----HHHHHcCCCEEEcCCCCC-HHHHHHHHHhcCCCCeEEE
Confidence 3 211 11 3333 344479999994332211 1223444444 3566654
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=81.51 E-value=6.7 Score=35.80 Aligned_cols=85 Identities=13% Similarity=0.193 Sum_probs=50.6
Q ss_pred HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 026125 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (243)
Q Consensus 105 A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaG 184 (243)
|+.++++|+|.|-+.... ..+.+. ..+ ..++.|++..+.|++. . |++ +++++ .+++++++
T Consensus 257 a~~l~~~G~d~i~v~~~~---~~~~~~---~~~----~~~~~v~~~~~iPvi~-~---Ggi--t~~~a----~~~l~~g~ 316 (364)
T 1vyr_A 257 IEELAKRGIAYLHMSETD---LAGGKP---YSE----AFRQKVRERFHGVIIG-A---GAY--TAEKA----EDLIGKGL 316 (364)
T ss_dssp HHHHHHTTCSEEEEECCB---TTBCCC---CCH----HHHHHHHHHCCSEEEE-E---SSC--CHHHH----HHHHHTTS
T ss_pred HHHHHHhCCCEEEEecCc---ccCCCc---ccH----HHHHHHHHHCCCCEEE-E---CCc--CHHHH----HHHHHCCC
Confidence 889999999999554211 111111 222 3456788888877544 3 345 56766 67887666
Q ss_pred CCEEEeCCCCCchHHHHHHHHHcCCc
Q 026125 185 MDAIKLEGGSPSRITAARGIVEAGIA 210 (243)
Q Consensus 185 AdaVKLEGg~~~~~~~i~~L~~~GIP 210 (243)
||+|-+--+.-..+++++++.+ |.|
T Consensus 317 aD~V~~gR~~l~~P~~~~~~~~-g~~ 341 (364)
T 1vyr_A 317 IDAVAFGRDYIANPDLVARLQK-KAE 341 (364)
T ss_dssp CSEEEESHHHHHCTTHHHHHHH-TCC
T ss_pred ccEEEECHHHHhChhHHHHHHc-CCC
Confidence 9999985432112344555553 555
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A | Back alignment and structure |
|---|
Probab=81.49 E-value=8.3 Score=34.94 Aligned_cols=91 Identities=16% Similarity=0.136 Sum_probs=59.5
Q ss_pred HHHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 104 sA~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
.|+-+.++|++.+= +|+ -++++-+..+++|+++. +...+..|.- ++| +.+++++.+.+ +
T Consensus 146 ~a~~~~~~Gf~~vKik~g~--------------~~~~~d~e~v~avR~a~G~d~~l~vDan-~~~--~~~~a~~~~~~-l 207 (382)
T 2gdq_A 146 NVEAQLKKGFEQIKVKIGG--------------TSFKEDVRHINALQHTAGSSITMILDAN-QSY--DAAAAFKWERY-F 207 (382)
T ss_dssp HHHHHHTTTCCEEEEECSS--------------SCHHHHHHHHHHHHHHHCTTSEEEEECT-TCC--CHHHHHTTHHH-H
T ss_pred HHHHHHHcCCCEEEEcCCC--------------CCHHHHHHHHHHHHHhhCCCCEEEEECC-CCC--CHHHHHHHHHH-H
Confidence 34445577999984 553 13577789999999887 4555678875 577 68999888765 4
Q ss_pred HHh-CCCEEEeCCCCC-chHHHHHHHHHc-CCceeec
Q 026125 181 KEG-GMDAIKLEGGSP-SRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 181 kea-GAdaVKLEGg~~-~~~~~i~~L~~~-GIPV~GH 214 (243)
++. | ...+|.... ....-.+.|.+. +|||++=
T Consensus 208 ~~~~~--i~~iEqP~~~~d~~~~~~l~~~~~iPIa~d 242 (382)
T 2gdq_A 208 SEWTN--IGWLEEPLPFDQPQDYAMLRSRLSVPVAGG 242 (382)
T ss_dssp TTCSC--EEEEECCSCSSCHHHHHHHHTTCSSCEEEC
T ss_pred hhccC--CeEEECCCCcccHHHHHHHHhhCCCCEEec
Confidence 444 4 456786532 112224556543 8999874
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=81.45 E-value=26 Score=30.40 Aligned_cols=97 Identities=20% Similarity=0.251 Sum_probs=67.3
Q ss_pred EEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHH
Q 026125 96 MVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDT 175 (243)
Q Consensus 96 mlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~n 175 (243)
.=|+.|...++.+-++|.|.|..+. .-.|++..|+. ...+ ++.| . .|++|+.
T Consensus 90 aGTVlt~~~a~~Ai~AGA~fIvsP~---------------~~~~vi~~~~~----~gi~-~ipG-----v-~TptEi~-- 141 (232)
T 4e38_A 90 AGTILNGEQALAAKEAGATFVVSPG---------------FNPNTVRACQE----IGID-IVPG-----V-NNPSTVE-- 141 (232)
T ss_dssp EECCCSHHHHHHHHHHTCSEEECSS---------------CCHHHHHHHHH----HTCE-EECE-----E-CSHHHHH--
T ss_pred ECCcCCHHHHHHHHHcCCCEEEeCC---------------CCHHHHHHHHH----cCCC-EEcC-----C-CCHHHHH--
Confidence 3478999999999999999998653 12455654443 2333 3443 2 3788884
Q ss_pred HHHHHHHhCCCEEEeCCCCCc-hHHHHHHHHHc--CCceeeccCCcccccc
Q 026125 176 AVRILKEGGMDAIKLEGGSPS-RITAARGIVEA--GIAVMGHVGLTPQAIS 223 (243)
Q Consensus 176 A~Rl~keaGAdaVKLEGg~~~-~~~~i~~L~~~--GIPV~GHiGLtPQ~~~ 223 (243)
+.+ +.|+|.||+=-.... -...+|+|..- ++|+|.==|++|+...
T Consensus 142 --~A~-~~Gad~vK~FPa~~~gG~~~lkal~~p~p~ip~~ptGGI~~~n~~ 189 (232)
T 4e38_A 142 --AAL-EMGLTTLKFFPAEASGGISMVKSLVGPYGDIRLMPTGGITPSNID 189 (232)
T ss_dssp --HHH-HTTCCEEEECSTTTTTHHHHHHHHHTTCTTCEEEEBSSCCTTTHH
T ss_pred --HHH-HcCCCEEEECcCccccCHHHHHHHHHHhcCCCeeeEcCCCHHHHH
Confidence 455 589999999554322 24668888874 7999987788887654
|
| >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=81.43 E-value=19 Score=31.91 Aligned_cols=111 Identities=16% Similarity=0.162 Sum_probs=66.1
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
+..|++..++-...++.+.+|..++..+++. +|++-+|... ++-- .+.+++. +++.|. +.--
T Consensus 91 l~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~-vd~~kIgs~~------------~~n~---~ll~~~a-~~~kPV-~lk~ 152 (276)
T 1vs1_A 91 LKLLRRAGDEAGLPVVTEVLDPRHVETVSRY-ADMLQIGARN------------MQNF---PLLREVG-RSGKPV-LLKR 152 (276)
T ss_dssp HHHHHHHHHHHTCCEEEECCCGGGHHHHHHH-CSEEEECGGG------------TTCH---HHHHHHH-HHTCCE-EEEC
T ss_pred HHHHHHHHHHcCCcEEEecCCHHHHHHHHHh-CCeEEECccc------------ccCH---HHHHHHH-ccCCeE-EEcC
Confidence 4555565555556688899999999999999 9999999433 1111 2234444 356674 4333
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCC-CEEEeC-CCCC--c------hHHHHHHHHHc-CCceee
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGM-DAIKLE-GGSP--S------RITAARGIVEA-GIAVMG 213 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGA-daVKLE-Gg~~--~------~~~~i~~L~~~-GIPV~G 213 (243)
+. . .++++. .+|+..++..|. +.+-|| |... . ....+..|.+. |.||+|
T Consensus 153 G~--~-~t~~ei-~~Ave~i~~~Gn~~i~L~~Rg~~~yp~y~~~~vdl~~i~~lk~~~~lpVi~ 212 (276)
T 1vs1_A 153 GF--G-NTVEEL-LAAAEYILLEGNWQVVLVERGIRTFEPSTRFTLDVAAVAVLKEATHLPVIV 212 (276)
T ss_dssp CT--T-CCHHHH-HHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCBHHHHHHHHHHBSSCEEE
T ss_pred CC--C-CCHHHH-HHHHHHHHHcCCCeEEEEeCCcCCCCCcCcchhCHHHHHHHHHHhCCCEEE
Confidence 33 2 244444 444555556675 777788 5421 1 12225566665 888854
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=81.30 E-value=17 Score=32.85 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 136 TLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 136 TldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
..+++..-.++|++.++.+.+=+=++- +| .+.++.. .|.++..++|||-||..=|
T Consensus 156 ~~~~v~~eI~~V~~a~~~~~lKVIlEt-~~-Lt~eei~-~A~~ia~eaGADfVKTSTG 210 (288)
T 3oa3_A 156 RYTDVFQDIRAVRLAAKDAILKVILET-SQ-LTADEII-AGCVLSSLAGADYVKTSTG 210 (288)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCG-GG-CCHHHHH-HHHHHHHHTTCSEEECCCS
T ss_pred cHHHHHHHHHHHHHHhcCCCceEEEEC-CC-CCHHHHH-HHHHHHHHcCCCEEEcCCC
Confidence 347788888889888877644344454 35 4667754 5778888999999999844
|
| >2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A* | Back alignment and structure |
|---|
Probab=81.21 E-value=9.6 Score=34.28 Aligned_cols=99 Identities=22% Similarity=0.272 Sum_probs=58.7
Q ss_pred HHHHHHcCCCEEEeCc-chhhhhccCCCCccCCHHHHHHHHHHHHcccC--CCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGD-SAAMVVHGHDTTLPITLEEMLVHCRAVARGAK--RPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 105 A~iae~AGiDiILVGD-Slgmv~lG~~dT~~vTldeMi~h~~aV~Rga~--~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
|+-.-++|.|+|=||- |- .|...+|+.+|-+....-|.+... ...|..| ||. ++.+ +. .++
T Consensus 52 a~~~v~~GAdiIDIGgeST------rPga~~v~~~eE~~Rv~pvi~~l~~~~vpiSID----T~~--~~Va-~a---Al~ 115 (294)
T 2y5s_A 52 AERMIAEGADLLDIGGEST------RPGAPPVPLDEELARVIPLVEALRPLNVPLSID----TYK--PAVM-RA---ALA 115 (294)
T ss_dssp HHHHHHTTCSEEEEESSCC------STTCCCCCHHHHHHHHHHHHHHHGGGCSCEEEE----CCC--HHHH-HH---HHH
T ss_pred HHHHHHCCCCEEEECCCcC------CCCCCCCCHHHHHHHHHHHHHHHhhCCCeEEEE----CCC--HHHH-HH---HHH
Confidence 3445578999997762 32 234456888876655444443332 3446788 562 3333 33 343
Q ss_pred HhCCCEEEe-CCCCCchHHHHHHHHHcCCceee-ccCCccccc
Q 026125 182 EGGMDAIKL-EGGSPSRITAARGIVEAGIAVMG-HVGLTPQAI 222 (243)
Q Consensus 182 eaGAdaVKL-EGg~~~~~~~i~~L~~~GIPV~G-HiGLtPQ~~ 222 (243)
+||+.|+= .|+. .+...+...+.|.|||. |..=+|++.
T Consensus 116 -aGa~iINdVsg~~--d~~m~~~~a~~~~~vVlmh~~G~p~tm 155 (294)
T 2y5s_A 116 -AGADLINDIWGFR--QPGAIDAVRDGNSGLCAMHMLGEPQTM 155 (294)
T ss_dssp -HTCSEEEETTTTC--STTHHHHHSSSSCEEEEECCCEETTTT
T ss_pred -cCCCEEEECCCCC--chHHHHHHHHhCCCEEEECCCCCCccc
Confidence 59999973 4432 23445666789999875 765467764
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=80.81 E-value=12 Score=33.12 Aligned_cols=105 Identities=22% Similarity=0.197 Sum_probs=67.1
Q ss_pred HHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 026125 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (243)
Q Consensus 108 ae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga-~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAd 186 (243)
.-++|+|-|++..|-|=. -.+|.||-..-.+.+++.+ ++..|++.. |+ .|.+++++.+...- +.|||
T Consensus 44 li~~Gv~Gl~v~GtTGE~-------~~Ls~~Er~~v~~~~~~~~~gr~pviaGv--g~--~~t~~ai~la~~A~-~~Gad 111 (307)
T 3s5o_A 44 LGTFPFRGFVVQGSNGEF-------PFLTSSERLEVVSRVRQAMPKNRLLLAGS--GC--ESTQATVEMTVSMA-QVGAD 111 (307)
T ss_dssp HTTSCCSEEEESSGGGTG-------GGSCHHHHHHHHHHHHHTSCTTSEEEEEC--CC--SSHHHHHHHHHHHH-HTTCS
T ss_pred HHHcCCCEEEECccccch-------hhCCHHHHHHHHHHHHHHcCCCCcEEEec--CC--CCHHHHHHHHHHHH-HcCCC
Confidence 447899998876565432 2478999888888888765 455567764 23 37899999886655 69999
Q ss_pred EEEeCCCCC--------chHHHHHHHHH-cCCcee-------eccCCccccccc
Q 026125 187 AIKLEGGSP--------SRITAARGIVE-AGIAVM-------GHVGLTPQAISV 224 (243)
Q Consensus 187 aVKLEGg~~--------~~~~~i~~L~~-~GIPV~-------GHiGLtPQ~~~~ 224 (243)
++-+---.. ....-.+++.+ .++||+ .++-|.|.....
T Consensus 112 avlv~~P~y~~~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~ 165 (307)
T 3s5o_A 112 AAMVVTPCYYRGRMSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPVDAVVT 165 (307)
T ss_dssp EEEEECCCTTGGGCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHH
T ss_pred EEEEcCCCcCCCCCCHHHHHHHHHHHHhhcCCCEEEEeCCcccCCCCCHHHHHH
Confidence 998843211 12223455555 478886 234455554433
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=80.80 E-value=1.2 Score=39.91 Aligned_cols=91 Identities=14% Similarity=0.134 Sum_probs=60.2
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHh
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~kea 183 (243)
.++.+.++|+|.|.+.|++|. .+-+++-...+++++..|.. .+.|-. +.+.--|+.|+...+ ++
T Consensus 162 ~~~~~~~~Ga~~i~l~DT~G~----------~~P~~v~~lv~~l~~~~~~~----~l~~H~-Hnd~Gla~AN~laAv-~a 225 (307)
T 1ydo_A 162 LSEALFEFGISELSLGDTIGA----------ANPAQVETVLEALLARFPAN----QIALHF-HDTRGTALANMVTAL-QM 225 (307)
T ss_dssp HHHHHHHHTCSCEEEECSSCC----------CCHHHHHHHHHHHHTTSCGG----GEEEEC-BGGGSCHHHHHHHHH-HH
T ss_pred HHHHHHhcCCCEEEEcCCCCC----------cCHHHHHHHHHHHHHhCCCC----eEEEEE-CCCCchHHHHHHHHH-Hh
Confidence 366678899999999999875 35566666677888776421 112212 246667889999999 58
Q ss_pred CCCEEEeC----C---------CCCchHHHHHHHHHcCCc
Q 026125 184 GMDAIKLE----G---------GSPSRITAARGIVEAGIA 210 (243)
Q Consensus 184 GAdaVKLE----G---------g~~~~~~~i~~L~~~GIP 210 (243)
||+.|-.- | |.--.++++..|-..|+.
T Consensus 226 Ga~~vd~tv~GlGecp~a~graGN~~~E~lv~~L~~~g~~ 265 (307)
T 1ydo_A 226 GITVFDGSAGGLGGCPYAPGSSGNAATEDIVYMLEQMDIK 265 (307)
T ss_dssp TCCEEEEBGGGCCEETTEEEEECBCBHHHHHHHHHHTTCB
T ss_pred CCCEEEEcccccCCCCCCCCCCCChhHHHHHHHHHhcCCC
Confidence 99988753 1 222345667777776664
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=80.74 E-value=2 Score=38.08 Aligned_cols=116 Identities=14% Similarity=0.103 Sum_probs=70.6
Q ss_pred CCCcEEEEecCCHHH------HHHHHHcCCCEEEeCcchhhhhccCCC---------CccCCHHHHHHHHHHHHcccCCC
Q 026125 90 NGEPITMVTAYDYPS------AVHLDSAGIDICLVGDSAAMVVHGHDT---------TLPITLEEMLVHCRAVARGAKRP 154 (243)
Q Consensus 90 ~g~~ItmlTAYD~~s------A~iae~AGiDiILVGDSlgmv~lG~~d---------T~~vTldeMi~h~~aV~Rga~~~ 154 (243)
++--|.-+|+-|... .+..+++|+|+|=+|-..+-=+.=-|. ...+|+++.+..++.++.- .|
T Consensus 13 ~~ali~yitaG~P~~~~t~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~--~P 90 (252)
T 3tha_A 13 ENANVAYTVLGYPNLQTSEAFLQRLDQSPIDILELGVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKTK--KA 90 (252)
T ss_dssp SSEEEEEEETTSSCHHHHHHHHHTGGGSSCSEEEEECCCSCCCSCCCHHHHHHHHHHHTTCCHHHHHHHHHHCCCS--SE
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCcHHHHHHHHHHHHCCCCHHHHHHHHHHHhcC--CC
Confidence 444567778877633 344678999999655222110000000 1246788888888888754 34
Q ss_pred cEEeeCCCCCCcCCHHH--HHHHHHHHHHHhCCCEEEeCCCC-CchHHHHHHHHHcCCceee
Q 026125 155 LLVGDLPFGTYESSTNQ--AVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVMG 213 (243)
Q Consensus 155 fvVaDmPfgsY~~s~e~--Av~nA~Rl~keaGAdaVKLEGg~-~~~~~~i~~L~~~GIPV~G 213 (243)
++ +++| .|+-. .+++=.+..+++|+|++-+-|=. ++.....+.+.+.||..+-
T Consensus 91 iv-----lm~Y-~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~~~~~~~~~~Gl~~I~ 146 (252)
T 3tha_A 91 LV-----FMVY-YNLIFSYGLEKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALIT 146 (252)
T ss_dssp EE-----EECC-HHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCHHHHHHHHHTTCEECE
T ss_pred EE-----EEec-cCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 32 3466 35432 35655667779999999998874 3355667778888987643
|
| >1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... | Back alignment and structure |
|---|
Probab=80.73 E-value=13 Score=33.42 Aligned_cols=97 Identities=20% Similarity=0.259 Sum_probs=55.1
Q ss_pred HHHHHHcCCCEEEeC-cchhhhhccCCCCccCCHHHHHHHH----HHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVG-DSAAMVVHGHDTTLPITLEEMLVHC----RAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 105 A~iae~AGiDiILVG-DSlgmv~lG~~dT~~vTldeMi~h~----~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl 179 (243)
|+-..+.|.|+|=|| .| ..|...+++.+|-+... +++++..+.| |..| || +++ +++. .
T Consensus 69 a~~~v~~GAdiIDIGgeS------trPga~~v~~~eE~~RvvpvI~~l~~~~~vp-iSID----T~--~~~-V~~a---A 131 (297)
T 1tx2_A 69 AKEMRDEGAHIIDIGGES------TRPGFAKVSVEEEIKRVVPMIQAVSKEVKLP-ISID----TY--KAE-VAKQ---A 131 (297)
T ss_dssp HHHHHHTTCSEEEEESCC----------CCCCCHHHHHHHHHHHHHHHHHHSCSC-EEEE----CS--CHH-HHHH---H
T ss_pred HHHHHHcCCCEEEECCCc------CCCCCCCCCHHHHHHHHHHHHHHHHhcCCce-EEEe----CC--CHH-HHHH---H
Confidence 344557899999665 34 23455677877755433 4555444444 6788 45 233 3333 3
Q ss_pred HHHhCCCEEEe-CCCCCchHHHHHHHHHcCCceee-ccCCccc
Q 026125 180 LKEGGMDAIKL-EGGSPSRITAARGIVEAGIAVMG-HVGLTPQ 220 (243)
Q Consensus 180 ~keaGAdaVKL-EGg~~~~~~~i~~L~~~GIPV~G-HiGLtPQ 220 (243)
++ +|++.|+= .|+. ..+.+.+.+.+.|.||+. |..=+|+
T Consensus 132 l~-aGa~iINdvsg~~-~d~~m~~~aa~~g~~vVlmh~~G~p~ 172 (297)
T 1tx2_A 132 IE-AGAHIINDIWGAK-AEPKIAEVAAHYDVPIILMHNRDNMN 172 (297)
T ss_dssp HH-HTCCEEEETTTTS-SCTHHHHHHHHHTCCEEEECCCSCCC
T ss_pred HH-cCCCEEEECCCCC-CCHHHHHHHHHhCCcEEEEeCCCCCC
Confidence 43 59999973 3332 124445667788988875 6544555
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=80.68 E-value=11 Score=38.06 Aligned_cols=118 Identities=16% Similarity=0.233 Sum_probs=72.6
Q ss_pred HHHHHHhhhCCCcEEEEe-c-----CC-------HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHH
Q 026125 81 LTHLRQKHKNGEPITMVT-A-----YD-------YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAV 147 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlT-A-----YD-------~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV 147 (243)
+..|++.. .+.++.|+. + |. -.....+-++|+|++-+-|++. .++.|..+.+.+
T Consensus 167 l~~l~~~~-~~~~l~~l~R~~n~vgy~~~p~~~~~~~i~~a~~~Gvd~irIf~s~n------------~l~~l~~~i~~a 233 (718)
T 3bg3_A 167 LQELRELI-PNIPFQMLLRGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLN------------YLPNMLLGMEAA 233 (718)
T ss_dssp HHHHHHHC-SSSCEEEEECGGGTTSSSCCCHHHHHHHHHHHHHHTCCEEEEECSSC------------CHHHHHHHHHHH
T ss_pred HHHHHHHc-ccchHHHHhcccccccccccCCcchHHHHHHHHhcCcCEEEEEecHH------------HHHHHHHHHHHH
Confidence 45565554 335677664 1 11 1344567788999998777662 367777777777
Q ss_pred HcccCCCcEEeeCCCC-----CCcC--CHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc--CCceee
Q 026125 148 ARGAKRPLLVGDLPFG-----TYES--STNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA--GIAVMG 213 (243)
Q Consensus 148 ~Rga~~~fvVaDmPfg-----sY~~--s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~--GIPV~G 213 (243)
++.-. .+.+++-|. .|+. +++..++.+.++. ++||+.|.|-|-.. ....+|++|.++ ++|+--
T Consensus 234 k~~G~--~v~~~i~~~~d~~dp~r~~~~~e~~~~~a~~l~-~~Ga~~I~l~DT~G~~~P~~v~~lV~~lk~~~p~~~I~~ 310 (718)
T 3bg3_A 234 GSAGG--VVEAAISYTGDVADPSRTKYSLQYYMGLAEELV-RAGTHILCIKDMAGLLKPTACTMLVSSLRDRFPDLPLHI 310 (718)
T ss_dssp HTTTS--EEEEEEECCSCTTCTTCCTTCHHHHHHHHHHHH-HHTCSEEEEECTTSCCCHHHHHHHHHHHHHHSTTCCEEE
T ss_pred HHcCC--eEEEEEEeeccccCCCCCCCCHHHHHHHHHHHH-HcCCCEEEEcCcCCCcCHHHHHHHHHHHHHhCCCCeEEE
Confidence 65332 223333222 2333 7888888887777 68999999988632 344556777654 466655
Q ss_pred c
Q 026125 214 H 214 (243)
Q Consensus 214 H 214 (243)
|
T Consensus 311 H 311 (718)
T 3bg3_A 311 H 311 (718)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=80.66 E-value=4.8 Score=36.70 Aligned_cols=67 Identities=22% Similarity=0.304 Sum_probs=46.4
Q ss_pred HHHHHHHHc-ccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC----CCCCchHHHHHHHHHcCCceeecc
Q 026125 141 LVHCRAVAR-GAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE----GGSPSRITAARGIVEAGIAVMGHV 215 (243)
Q Consensus 141 i~h~~aV~R-ga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE----Gg~~~~~~~i~~L~~~GIPV~GHi 215 (243)
+.-.+.+++ .++.| |++|=-+ .+++++ .+++++..+|+|.+- ||-.....+++...+.||+||.|-
T Consensus 235 ~~~~~~l~~~~~~iP-I~~dE~~----~~~~~~----~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~h~ 305 (401)
T 2hzg_A 235 LAAHAALAGRGARVR-IAGGEAA----HNFHMA----QHLMDYGRIGFIQIDCGRIGGLGPAKRVADAAQARGITYVNHT 305 (401)
T ss_dssp HHHHHHHHTTCCSSE-EEECTTC----SSHHHH----HHHHHHSCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEECC
T ss_pred HHHHHHHHhhCCCCC-EEecCCc----CCHHHH----HHHHHCCCCCEEEeCcchhCCHHHHHHHHHHHHHcCCEEecCC
Confidence 334456877 77666 6777433 356665 677877789999883 775545566666678899999993
Q ss_pred C
Q 026125 216 G 216 (243)
Q Consensus 216 G 216 (243)
+
T Consensus 306 ~ 306 (401)
T 2hzg_A 306 F 306 (401)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=80.47 E-value=6.5 Score=33.08 Aligned_cols=70 Identities=13% Similarity=0.134 Sum_probs=44.1
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ke 182 (243)
..|+.++++|+|.|.+-|--+. |.. .... +...+.|++..+.|+++.. +. .+++++ .+++ +
T Consensus 39 ~~a~~~~~~G~~~i~v~d~~~~---~~~--~~~~----~~~i~~i~~~~~ipvi~~G----gi-~~~~~~----~~~l-~ 99 (247)
T 3tdn_A 39 DWVVEVEKRGAGEILLTSIDRD---GTK--SGYD----TEMIRFVRPLTTLPIIASG----GA-GKMEHF----LEAF-L 99 (247)
T ss_dssp HHHHHHHHTTCSEEEEEETTTT---TCS--SCCC----HHHHHHHGGGCCSCEEEES----CC-CSHHHH----HHHH-H
T ss_pred HHHHHHHHcCCCEEEEEecCcc---cCC--Cccc----HHHHHHHHHhCCCCEEEeC----CC-CCHHHH----HHHH-H
Confidence 4688899999999976552111 110 1122 3445778888877855532 44 477776 4555 5
Q ss_pred hCCCEEEeC
Q 026125 183 GGMDAIKLE 191 (243)
Q Consensus 183 aGAdaVKLE 191 (243)
.|||+|.+-
T Consensus 100 ~Gad~V~ig 108 (247)
T 3tdn_A 100 RGADKVSIN 108 (247)
T ss_dssp TTCSEECCS
T ss_pred cCCCeeehh
Confidence 799999873
|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
Probab=80.41 E-value=18 Score=32.20 Aligned_cols=99 Identities=23% Similarity=0.188 Sum_probs=57.8
Q ss_pred HHHHHHcCCCEEEeCc-chhhhhccCCCCccCCHHHHH----HHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGD-SAAMVVHGHDTTLPITLEEML----VHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 105 A~iae~AGiDiILVGD-Slgmv~lG~~dT~~vTldeMi----~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl 179 (243)
|+-.-++|.|+|=||- |. .|...+|+.+|=+ .-.+++++..+.| |..| ||. ++-+ + +.
T Consensus 44 a~~~v~~GAdiIDIGgest------rPga~~v~~~eE~~rv~pvi~~l~~~~~~p-iSID----T~~--~~va-~---aA 106 (282)
T 1aj0_A 44 ANLMINAGATIIDVGGEST------RPGAAEVSVEEELQRVIPVVEAIAQRFEVW-ISVD----TSK--PEVI-R---ES 106 (282)
T ss_dssp HHHHHHHTCSEEEEESSCC------STTCCCCCHHHHHHHHHHHHHHHHHHCCCE-EEEE----CCC--HHHH-H---HH
T ss_pred HHHHHHCCCCEEEECCCcC------CCCCCcCCHHHHHHHHHHHHHHHHhhcCCe-EEEe----CCC--HHHH-H---HH
Confidence 3445578999997663 42 4555677766633 4444454433333 6788 462 3333 3 34
Q ss_pred HHHhCCCEEEeCCCCCchHHHHHHHHHcCCceee-ccCCccccc
Q 026125 180 LKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMG-HVGLTPQAI 222 (243)
Q Consensus 180 ~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~G-HiGLtPQ~~ 222 (243)
+ ++||+.|+==.|. ..+..++...+.|.||+. |..=+|++.
T Consensus 107 l-~aGa~iINdvsg~-~d~~~~~~~a~~~~~vVlmh~~G~p~tm 148 (282)
T 1aj0_A 107 A-KVGAHIINDIRSL-SEPGALEAAAETGLPVCLMHMQGNPKTM 148 (282)
T ss_dssp H-HTTCCEEEETTTT-CSTTHHHHHHHHTCCEEEECCSSCTTCC
T ss_pred H-HcCCCEEEECCCC-CCHHHHHHHHHhCCeEEEEccCCCCccc
Confidence 4 3699999743321 223445666788998875 765467654
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=80.37 E-value=25 Score=29.60 Aligned_cols=97 Identities=14% Similarity=0.149 Sum_probs=63.1
Q ss_pred hhCCCcEEEEecCCHH----HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC
Q 026125 88 HKNGEPITMVTAYDYP----SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG 163 (243)
Q Consensus 88 kk~g~~ItmlTAYD~~----sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg 163 (243)
.++..-|.++...|.. .+..+-++|++++-+++.- + .-.| ..+.+++..+..++.++. +
T Consensus 13 l~~~~~i~v~r~~~~~~~~~~~~al~~gGv~~iel~~k~-----------~-~~~~---~i~~l~~~~~~~~vgagt-v- 75 (214)
T 1wbh_A 13 LTTGPVVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRT-----------E-CAVD---AIRAIAKEVPEAIVGAGT-V- 75 (214)
T ss_dssp HHSCSEEEEECCSSGGGHHHHHHHHHHTTCCEEEEESCS-----------T-THHH---HHHHHHHHCTTSEEEEES-C-
T ss_pred HHHCCEEEEEECCCHHHHHHHHHHHHHcCCCEEEEeCCC-----------h-hHHH---HHHHHHHHCcCCEEeeCE-E-
Confidence 3556677888888876 4566667899999777421 1 1223 334566666666666775 4
Q ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCcee
Q 026125 164 TYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVM 212 (243)
Q Consensus 164 sY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~ 212 (243)
.+.+++ ++..++|||.|..-+. ..+++++..+.|+|++
T Consensus 76 ---i~~d~~-----~~A~~aGAd~v~~p~~---d~~v~~~~~~~g~~~i 113 (214)
T 1wbh_A 76 ---LNPQQL-----AEVTEAGAQFAISPGL---TEPLLKAATEGTIPLI 113 (214)
T ss_dssp ---CSHHHH-----HHHHHHTCSCEEESSC---CHHHHHHHHHSSSCEE
T ss_pred ---EEHHHH-----HHHHHcCCCEEEcCCC---CHHHHHHHHHhCCCEE
Confidence 345555 3344689999987533 3556788888999987
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=80.27 E-value=10 Score=34.23 Aligned_cols=121 Identities=9% Similarity=0.003 Sum_probs=66.8
Q ss_pred CCCcEEEEecCCHHHHHHHHHc----CCCEEEeCcchhhhhc--cCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC
Q 026125 90 NGEPITMVTAYDYPSAVHLDSA----GIDICLVGDSAAMVVH--GHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG 163 (243)
Q Consensus 90 ~g~~ItmlTAYD~~sA~iae~A----GiDiILVGDSlgmv~l--G~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg 163 (243)
.+-++++++--.-.....+-++ |+|.|-+-+|.+=... -+.-+..-.++.+...++..++ .... +..+.|+.
T Consensus 68 ~~~~i~~l~r~~~~~i~~a~~al~~ag~~~v~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~-~g~~-v~f~~~d~ 145 (325)
T 3eeg_A 68 TRPTICALTRAKEADINIAGEALRFAKRSRIHTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKK-VVHE-VEFFCEDA 145 (325)
T ss_dssp CSSEEEEECCSCHHHHHHHHHHHTTCSSEEEEEEEECSHHHHC----CCCTTGGGTTHHHHHHHHT-TSSE-EEEEEETG
T ss_pred CCCEEEEeecCCHHHHHHHHHhhcccCCCEEEEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHH-CCCE-EEEEcccc
Confidence 4567777764333333334444 9998865555433211 1111222223333333332222 2222 56788885
Q ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----chHHHHHHHHHc--C---Cceeec
Q 026125 164 TYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA--G---IAVMGH 214 (243)
Q Consensus 164 sY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~-----~~~~~i~~L~~~--G---IPV~GH 214 (243)
+- .+++..++.+.++. +.||+.|.|-|-.. ....++++|.+. + +|+--|
T Consensus 146 ~~-~~~~~~~~~~~~~~-~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~~~i~~H 204 (325)
T 3eeg_A 146 GR-ADQAFLARMVEAVI-EAGADVVNIPDTTGYMLPWQYGERIKYLMDNVSNIDKAILSAH 204 (325)
T ss_dssp GG-SCHHHHHHHHHHHH-HHTCSEEECCBSSSCCCHHHHHHHHHHHHHHCSCGGGSEEEEC
T ss_pred cc-chHHHHHHHHHHHH-hcCCCEEEecCccCCcCHHHHHHHHHHHHHhCCCCCceEEEEE
Confidence 54 79999988887776 68999999988632 244556666553 2 566555
|
| >3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5} | Back alignment and structure |
|---|
Probab=80.08 E-value=6.1 Score=33.92 Aligned_cols=74 Identities=14% Similarity=0.009 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHH-hCCCEEEeCCCCCchHHHHHHHHHcCCceeecc
Q 026125 137 LEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE-GGMDAIKLEGGSPSRITAARGIVEAGIAVMGHV 215 (243)
Q Consensus 137 ldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~ke-aGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHi 215 (243)
+.+++.-.+..++-....+++.+.. .+.+.-.+..-+++.+ .++|+|-+-+........++.+.++||||+---
T Consensus 19 ~~~~~~g~~~~a~~~g~~~~~~~~~-----~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~~~~~giPvV~~~ 93 (350)
T 3h75_A 19 WVSYSQFMQAAARDLGLDLRILYAE-----RDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILRLSQGSGIKLFIVN 93 (350)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECT-----TCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHHHTTSCCEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCeEEEEECC-----CCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHHHHHhCCCcEEEEc
Confidence 4566666666666566666666532 2555555555666643 489999997643345566888999999998743
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=80.06 E-value=4 Score=33.15 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=48.4
Q ss_pred CCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCC-HHHHHHHHHHHHHHhCCCEE--
Q 026125 112 GIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESS-TNQAVDTAVRILKEGGMDAI-- 188 (243)
Q Consensus 112 GiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s-~e~Av~nA~Rl~keaGAdaV-- 188 (243)
|+|++=+|+.+- ...|. ...+.+++..+...+++|+-+ | + ++.-+ +...++|||+|
T Consensus 25 ~v~~iev~~~~~-~~~g~------------~~i~~l~~~~~~~~i~~~l~~--~--di~~~~~----~~a~~~Gad~v~v 83 (207)
T 3ajx_A 25 YVDIIELGTPLI-KAEGL------------SVITAVKKAHPDKIVFADMKT--M--DAGELEA----DIAFKAGADLVTV 83 (207)
T ss_dssp GCSEEEECHHHH-HHHCT------------HHHHHHHHHSTTSEEEEEEEE--C--SCHHHHH----HHHHHTTCSEEEE
T ss_pred cCCEEEECcHHH-HhhCH------------HHHHHHHHhCCCCeEEEEEEe--c--CccHHHH----HHHHhCCCCEEEE
Confidence 779988898762 22332 234556655544457788765 4 3 55533 34447999999
Q ss_pred EeCCCCCchHHHHHHHHHcCCce
Q 026125 189 KLEGGSPSRITAARGIVEAGIAV 211 (243)
Q Consensus 189 KLEGg~~~~~~~i~~L~~~GIPV 211 (243)
..+.+.+....+++.+-+.|+++
T Consensus 84 h~~~~~~~~~~~~~~~~~~g~~~ 106 (207)
T 3ajx_A 84 LGSADDSTIAGAVKAAQAHNKGV 106 (207)
T ss_dssp ETTSCHHHHHHHHHHHHHHTCEE
T ss_pred eccCChHHHHHHHHHHHHcCCce
Confidence 56666344445566666778886
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 243 | ||||
| d1oy0a_ | 262 | c.1.12.8 (A:) Ketopantoate hydroxymethyltransferas | 9e-40 | |
| d1m3ua_ | 262 | c.1.12.8 (A:) Ketopantoate hydroxymethyltransferas | 8e-39 | |
| d1o66a_ | 260 | c.1.12.8 (A:) Ketopantoate hydroxymethyltransferas | 1e-36 | |
| d2p10a1 | 197 | c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 | 5e-08 | |
| d1muma_ | 289 | c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichi | 2e-06 | |
| d1s2wa_ | 275 | c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mus | 4e-05 |
| >d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 262 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 136 bits (342), Expect = 9e-40
Identities = 71/157 (45%), Positives = 99/157 (63%), Gaps = 1/157 (0%)
Query: 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITL 137
++ HL++ +G M+TAYDY +A D AGI + LVGDSAA VV+G+DTT+PI++
Sbjct: 3 KIRTHHLQRWKADGHKWAMLTAYDYSTARIFDEAGIPVLLVGDSAANVVYGYDTTVPISI 62
Query: 138 EEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSR 197
+E++ R V RGA L+V DLPFG+YE+ A+ A R LK+GG A+K G
Sbjct: 63 DELIPLVRGVVRGAPHALVVADLPFGSYEAGPTAALAAATRFLKDGGAHAVK-LEGGERV 121
Query: 198 ITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKN 234
+ AGI VM H+G TPQ+++ LGGFR QG+
Sbjct: 122 AEQIACLTAAGIPVMAHIGFTPQSVNTLGGFRVQGRG 158
|
| >d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} Length = 262 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Escherichia coli [TaxId: 562]
Score = 133 bits (335), Expect = 8e-39
Identities = 54/165 (32%), Positives = 90/165 (54%), Gaps = 3/165 (1%)
Query: 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLE 138
T++ L++ + + +TAYDY A G+++ LVGDS M V GHD+TLP+T+
Sbjct: 2 TTISLLQKYKQEKKRFATITAYDYSFAKLFADEGLNVMLVGDSLGMTVQGHDSTLPVTVA 61
Query: 139 EMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRI 198
++ H AV RGA LL+ DLPF Y T + + G + +K+E G +
Sbjct: 62 DIAYHTAAVRRGAPNCLLLADLPFMAYA--TPEQAFENAATVMRAGANMVKIE-GGEWLV 118
Query: 199 TAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVFI 243
+ + E + V GH+GLTPQ++++ GG++ QG+ + ++
Sbjct: 119 ETVQMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRGDEAGDQLLS 163
|
| >d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Neisseria meningitidis [TaxId: 487]
Score = 127 bits (321), Expect = 1e-36
Identities = 60/156 (38%), Positives = 87/156 (55%), Gaps = 2/156 (1%)
Query: 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLE 138
+T+ L++ GE I M+TAY+ A +D AG+++ LVGDS M V G +TLP++L
Sbjct: 2 ITVNTLQKMKAAGEKIAMLTAYESSFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLR 61
Query: 139 EMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRI 198
+M H VARGAK ++V DLPFG Y+ S QA A ++ G G +
Sbjct: 62 DMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAAAAELMAAGAHMVKLEGGVWMAET 121
Query: 199 TAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKN 234
T + GI V H+GLTPQ++ GG++ QG+
Sbjct: 122 TEF--LQMRGIPVCAHIGLTPQSVFAFGGYKVQGRG 155
|
| >d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 {Mesorhizobium loti [TaxId: 381]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Mll9387-like domain: Uncharacterized protein Mll9387 species: Mesorhizobium loti [TaxId: 381]
Score = 49.5 bits (118), Expect = 5e-08
Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 9/119 (7%)
Query: 75 PNQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDT--- 131
P + + ++K + GEPI A SA ++ ID+ ++ +S + G +
Sbjct: 3 PTRSELVDRFQKKIRAGEPIIGGGAGTGLSAKSEEAGDIDLIVIYNSGRYRMAGRGSLAG 62
Query: 132 --TLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAI 188
+ ++ R V + ++ + + + T +R LKE G +
Sbjct: 63 LLAYGNANQIVVDMAREVLPVVRHTPVLAGV--NGTDPFMV--MSTFLRELKEIGFAGV 117
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} Length = 289 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Score = 45.5 bits (107), Expect = 2e-06
Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 4/110 (3%)
Query: 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGID-ICLVGDSAAMVVHGHDTTLPITLEEMLV 142
R P+ +V + A+ AG I L G A G TL+++L
Sbjct: 8 FRAALTKENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLT 67
Query: 143 HCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192
R + PLLV S+ V V+ + + G + +E
Sbjct: 68 DIRRITDVCSLPLLV---DADIGFGSSAFNVARTVKSMIKAGAAGLHIED 114
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} Length = 275 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Score = 41.7 bits (97), Expect = 4e-05
Identities = 13/86 (15%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Query: 82 THLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEML 141
T L+Q + + ++ A++ SA + AG + G + + +++
Sbjct: 6 TQLKQMLNSKDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVV 65
Query: 142 VHCRAVARGAKRPL-LVGDLPFGTYE 166
++ + P+ L D +G +
Sbjct: 66 EVLEFMSDASDVPILLDADTGYGNFN 91
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 243 | |||
| d1oy0a_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Mycoba | 100.0 | |
| d1m3ua_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Escher | 100.0 | |
| d1o66a_ | 260 | Ketopantoate hydroxymethyltransferase PanB {Neisse | 100.0 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 99.74 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 99.74 | |
| d2p10a1 | 197 | Uncharacterized protein Mll9387 {Mesorhizobium lot | 99.3 | |
| d1f61a_ | 418 | Isocitrate lyase {Mycobacterium tuberculosis [TaxI | 99.27 | |
| d1igwa_ | 416 | Isocitrate lyase {Escherichia coli [TaxId: 562]} | 99.12 | |
| d1dqua_ | 519 | Isocitrate lyase {Aspergillus nidulans [TaxId: 162 | 98.68 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 96.75 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 96.35 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 96.19 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 95.81 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 95.61 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 95.52 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 95.48 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 95.42 | |
| d2dvta1 | 325 | Thermophilic reversible gamma-resorcylate decarbox | 95.38 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 95.32 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 94.37 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 94.22 | |
| d2f6ka1 | 306 | Putative amidohydrolase LP2961 {Lactobacillus plan | 94.07 | |
| d2gwga1 | 342 | 4-oxalomesaconate hydratase LigJ {Rhodopseudomonas | 94.06 | |
| d1izca_ | 299 | Macrophomate synthase {Macrophoma commelinae [TaxI | 93.87 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 93.81 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 93.55 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 93.01 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 92.33 | |
| d1dxea_ | 253 | 2-dehydro-3-deoxy-galactarate aldolase {Escherichi | 92.12 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 91.77 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 91.75 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 90.46 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 90.44 | |
| d2hbva1 | 331 | 2-amino-3-carboxymuconate 6-semialdehyde decarboxy | 90.41 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 90.4 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 90.01 | |
| d1igwa_ | 416 | Isocitrate lyase {Escherichia coli [TaxId: 562]} | 89.9 | |
| d1wx0a1 | 211 | Decameric fructose-6-phosphate aldolase/transaldol | 89.32 | |
| d1vpxa_ | 218 | Decameric fructose-6-phosphate aldolase/transaldol | 89.02 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 88.99 | |
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 88.87 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 88.61 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 88.27 | |
| d1p4ca_ | 353 | Membrane-associated (S)-mandelate dehydrogenase {P | 88.1 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 87.83 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 86.21 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 86.06 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 85.41 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 84.97 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 84.72 | |
| d1l6wa_ | 220 | Decameric fructose-6-phosphate aldolase/transaldol | 84.18 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 83.6 | |
| d1to3a_ | 291 | Putative aldolase YihT {Salmonella typhimurium [Ta | 83.02 | |
| d1ad1a_ | 264 | Dihydropteroate synthetase {Staphylococcus aureus | 82.02 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 81.53 | |
| d1jyea_ | 271 | Lac-repressor (lacR) core (C-terminal domain) {Esc | 81.08 | |
| d1rqba2 | 303 | Transcarboxylase 5S subunit, N-terminal domain {Pr | 80.02 |
| >d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=9.8e-63 Score=441.68 Aligned_cols=164 Identities=45% Similarity=0.763 Sum_probs=143.2
Q ss_pred CCCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCc
Q 026125 76 NQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPL 155 (243)
Q Consensus 76 ~~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~f 155 (243)
++|+|+.+|+++|++|+||+|+||||+++|+++|++|||+||||||+||+++||++|.+||+|||++|+++|+||++++|
T Consensus 1 r~k~ti~~l~~~K~~g~ki~~lTaYD~~~A~~~~~agiDiiLVGDSlgmv~~G~~~T~~Vt~d~m~~H~~aV~rga~~~~ 80 (262)
T d1oy0a_ 1 RTKIRTHHLQRWKADGHKWAMLTAYDYSTARIFDEAGIPVLLVGDSAANVVYGYDTTVPISIDELIPLVRGVVRGAPHAL 80 (262)
T ss_dssp CCCCCHHHHHHHHHHTCCEEEEECCSHHHHHHHHTTTCCEEEECTTHHHHTTCCSSSSSCCGGGTHHHHHHHHHHCTTSE
T ss_pred CCcccHHHHHHHHhCCCcEEEEeCCCHHHHHHHHHcCCCEEEEcCchhhhhcCCCCcceeeHHHHHHHHHHHHhccccce
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccCCcccccccccCccccccCH
Q 026125 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNV 235 (243)
Q Consensus 156 vVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiGLtPQ~~~~~GGykvqGkt~ 235 (243)
+++||||++|+.|++++++||.|+++++|||+||||||.+. .++|++|+++|||||||||||||+++|+||||+|||+.
T Consensus 81 iv~DmPf~s~~~s~~~a~~nA~r~~~~~ga~avkleg~~~~-~~~I~~L~~~gIPV~gHiGLtPQ~~~~~Gg~r~~Gk~~ 159 (262)
T d1oy0a_ 81 VVADLPFGSYEAGPTAALAAATRFLKDGGAHAVKLEGGERV-AEQIACLTAAGIPVMAHIGFTPQSVNTLGGFRVQGRGD 159 (262)
T ss_dssp EEEECCTTSSTTCHHHHHHHHHHHHHTTCCSEEEEEBSGGG-HHHHHHHHHHTCCEEEEEECCC--------------CH
T ss_pred eEecchhhhcccchHHHHHHHHHHHhccccceeeechhhhh-HHHHHHHHhcCCceEEeeeecceeeeecCccceeccch
Confidence 99999999999999999999999999999999999999865 56699999999999999999999999999999999997
Q ss_pred Hhhccc
Q 026125 236 TSAVKV 241 (243)
Q Consensus 236 ~~A~~l 241 (243)
++ .+|
T Consensus 160 ~~-~~l 164 (262)
T d1oy0a_ 160 AA-EQT 164 (262)
T ss_dssp HH-HHH
T ss_pred hh-hHh
Confidence 65 444
|
| >d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.6e-62 Score=436.34 Aligned_cols=162 Identities=35% Similarity=0.673 Sum_probs=155.9
Q ss_pred CCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEE
Q 026125 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (243)
Q Consensus 78 ~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvV 157 (243)
++|+.+|+++|++|+||+|+||||+++|+++|++|||+||||||+||+++||+||.+||||+|++|+++|+||++++|++
T Consensus 1 piTi~~L~~~K~~g~ki~~lTayD~~~A~~~~~agvDiiLVGDSlgmv~~G~~~T~~vt~d~mi~H~~aV~rga~~~~vv 80 (262)
T d1m3ua_ 1 PTTISLLQKYKQEKKRFATITAYDYSFAKLFADEGLNVMLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLL 80 (262)
T ss_dssp CCCHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEE
T ss_pred CccHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHCCCCEEEEcCcHHhcccCCCCcceechHhHHHHHHHHHhccccceeE
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccCCcccccccccCccccccCHHh
Q 026125 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTS 237 (243)
Q Consensus 158 aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiGLtPQ~~~~~GGykvqGkt~~~ 237 (243)
+||||++|+ +.+++++||.++++ +|||+||||||.+. .++|++|+++|||||||||||||+++++||||+||||++|
T Consensus 81 ~DmPf~sy~-~~~~a~~~a~~l~~-~GAdaVKlEgg~~~-~~~I~~L~~~gIPV~gHiGL~PQ~~~~~GG~r~qGkt~~e 157 (262)
T d1m3ua_ 81 ADLPFMAYA-TPEQAFENAATVMR-AGANMVKIEGGEWL-VETVQMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRGDEA 157 (262)
T ss_dssp EECCTTSSS-SHHHHHHHHHHHHH-TTCSEEECCCSGGG-HHHHHHHHHTTCCEEEEEESCGGGHHHHTSSCCCCCSHHH
T ss_pred eccccccch-hhHHHHHHHHHHHh-cCCcEEEeccchhH-HHHHHHHHHcCCeEEeehhhchhhhhhcCCccccCccHHH
Confidence 999999995 89999999999995 99999999999865 5669999999999999999999999999999999999999
Q ss_pred hcccc
Q 026125 238 AVKVF 242 (243)
Q Consensus 238 A~~ll 242 (243)
|++|+
T Consensus 158 a~~l~ 162 (262)
T d1m3ua_ 158 GDQLL 162 (262)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99876
|
| >d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Neisseria meningitidis [TaxId: 487]
Probab=100.00 E-value=1.4e-58 Score=414.14 Aligned_cols=161 Identities=39% Similarity=0.689 Sum_probs=142.2
Q ss_pred CCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEe
Q 026125 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (243)
Q Consensus 79 ~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVa 158 (243)
+|+.+|+++|++|+||+|+||||+++|+++|++|||+||||||+||+++||++|.+||+|||++|+++|+||++++|+++
T Consensus 2 ~Ti~~L~~~K~~g~ki~~lTayd~~~A~~ae~agiDiilVGDSlgm~~~G~~~T~~vt~d~mi~h~~aV~rga~~~~~i~ 81 (260)
T d1o66a_ 2 ITVNTLQKMKAAGEKIAMLTAYESSFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVS 81 (260)
T ss_dssp CCHHHHHHHHHHTCCEEEEECCSHHHHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred CCHHHHHHHHhCCCcEEEEeCCCHHHHHHHHHcCCCEEEEcCCchheecCCCCccccchhhhhhhhHHHHccCcceeeec
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccCCcccccccccCccccccCHHhh
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSA 238 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiGLtPQ~~~~~GGykvqGkt~~~A 238 (243)
||||++|+.+.+++++|+.+++ ++|||+||||||.+. .++|++|+++|||||||||||||+++|+||||+||||.++
T Consensus 82 dmPf~sy~~~~~~~~~a~~~~~-~~gadavk~eg~~~~-~~~i~~l~~~gIPV~gHiGl~Pq~~~~~gG~r~~Gk~~e~- 158 (260)
T d1o66a_ 82 DLPFGAYQQSKEQAFAAAAELM-AAGAHMVKLEGGVWM-AETTEFLQMRGIPVCAHIGLTPQSVFAFGGYKVQGRGGKA- 158 (260)
T ss_dssp ECCTTSSSSCHHHHHHHHHHHH-HTTCSEEEEECSGGG-HHHHHHHHHTTCCEEEEEESCGGGTTC-----------CH-
T ss_pred chhhhhhcchhHHHHHHHHHHH-Hhhhhhccccchhhh-hHHHHHHHHcCCeeEeecccccchheecCcceeccccchh-
Confidence 9999999999999999988888 589999999999875 5569999999999999999999999999999999999754
Q ss_pred cccc
Q 026125 239 VKVF 242 (243)
Q Consensus 239 ~~ll 242 (243)
.+|+
T Consensus 159 ~~l~ 162 (260)
T d1o66a_ 159 QALL 162 (260)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5654
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=3.6e-18 Score=152.69 Aligned_cols=110 Identities=19% Similarity=0.264 Sum_probs=98.9
Q ss_pred HHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEe-CcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 82 THLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 82 ~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILV-GDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
.+||++++.+++++++++||+.||++++++|++++.+ |.++++..+|+||.+.+|++||+.+++.|+++++.| |++|.
T Consensus 6 ~~lr~ll~~~~~~~~~~~~D~~sA~~~e~~Gf~a~~~sg~~~sa~~~G~pD~~~~~~~e~~~~~~~i~~a~~~P-vi~D~ 84 (289)
T d1muma_ 6 KAFRAALTKENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLP-LLVDA 84 (289)
T ss_dssp HHHHHHHHHCSSEEEEECSSHHHHHHHHHTTCSCEEECHHHHHHTTSCCCSSSCCCHHHHHHHHHHHHHHCCSC-EEEEC
T ss_pred HHHHHHHhCCCCEEeecCCCHHHHHHHHHcCCCEEEhhHHHHHHHccCCCCCCCCChHHHHHHHHHHhcccCCC-eeecc
Confidence 4599999999999999999999999999999999975 566777889999999999999999999999999988 68888
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
.- +|+.+++++.+++.++. ++||.+|.|||..
T Consensus 85 d~-GyG~~~~~v~~~v~~~~-~aGvagi~iEDq~ 116 (289)
T d1muma_ 85 DI-GFGSSAFNVARTVKSMI-KAGAAGLHIEDQV 116 (289)
T ss_dssp TT-CSSSSHHHHHHHHHHHH-HHTCSEEEEECBC
T ss_pred cc-cccccchHHHHHHHHHH-HCCCCEEEecCcc
Confidence 77 67656889989988888 5999999999973
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=99.74 E-value=3.9e-18 Score=151.27 Aligned_cols=109 Identities=16% Similarity=0.115 Sum_probs=88.5
Q ss_pred HHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCC
Q 026125 82 THLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (243)
Q Consensus 82 ~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmP 161 (243)
..||+++++++++.++++||+.||++++++||++|.++...-...+|+||.+.+|++||+.+++.|+++++.| |++|+.
T Consensus 6 ~~lr~l~~~~~~~~~p~~~Da~SAr~~e~aGf~a~~~ss~~~aas~G~pD~~~lt~~e~~~~~~~I~~~~~lP-v~~D~d 84 (275)
T d1s2wa_ 6 TQLKQMLNSKDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDASDVP-ILLDAD 84 (275)
T ss_dssp HHHHHHHHSSSCEEEEEECSHHHHHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTCSSC-EEEECC
T ss_pred HHHHHHHhCCCCEEeecCcCHHHHHHHHHcCCCEEEhhHHHHHHHcCCCCCCccchhhHHHHHHhhhcccCCc-eeEecc
Confidence 6799999999999999999999999999999999976643323569999999999999999999999999888 789998
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 162 fgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
- +| .++.++.+++.++. ++||.+|+|||..
T Consensus 85 ~-Gy-G~~~~v~~tv~~~~-~aGaagi~iEDq~ 114 (275)
T d1s2wa_ 85 T-GY-GNFNNARRLVRKLE-DRGVAGACLEDKL 114 (275)
T ss_dssp S-SC-SSHHHHHHHHHHHH-HTTCCEEEEECBC
T ss_pred c-cc-ccchHHHHHHHHHH-HhccceeEeeccc
Confidence 8 68 48999999998888 5999999999963
|
| >d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Mll9387-like domain: Uncharacterized protein Mll9387 species: Mesorhizobium loti [TaxId: 381]
Probab=99.30 E-value=5.5e-12 Score=106.98 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=78.9
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCc-cC----CHHHHHHHHHHHHcccC-C
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTL-PI----TLEEMLVHCRAVARGAK-R 153 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~-~v----TldeMi~h~~aV~Rga~-~ 153 (243)
....||++++++++|.++++||..||+++|++|||+|.+..+--..+.|++|.. .. +.++++..++.|...+. .
T Consensus 8 ~~~~lr~~l~~~~~l~~~g~~d~lsAklae~aGfdai~~~~~g~~~s~g~~~~~g~l~~~d~~~~~~~~a~~i~~~v~~i 87 (197)
T d2p10a1 8 LVDRFQKKIRAGEPIIGGGAGTGLSAKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLLAYGNANQIVVDMAREVLPVVRHT 87 (197)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSHHHHHHHHHTTCSEEEECHHHHHHHTTCCGGGGGBTEEEHHHHHHHHHHHHGGGCSSS
T ss_pred HHHHHHHHHhCCCCEEEcccccHHHHHHHHHcCCCEEEEecHHHHHHcCCcccccccChhHHHHHHHHHHHHHHHhcccC
Confidence 456799999999999999999999999999999999988755545677777742 22 23556777888876654 5
Q ss_pred CcEEeeC-CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 154 PLLVGDL-PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 154 ~fvVaDm-PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
| |++|. .||.+ .|..+. . +.++++|+.+|.++..
T Consensus 88 P-viaD~dG~g~~-~nv~rt---v-~~~~~aG~agI~~~pk 122 (197)
T d2p10a1 88 P-VLAGVNGTDPF-MVMSTF---L-RELKEIGFAGVQNFPT 122 (197)
T ss_dssp C-EEEEECTTCTT-CCHHHH---H-HHHHHHTCCEEEECSC
T ss_pred c-eEEecCCCCcc-hhHHHH---H-HHHHHcCCeEEecccc
Confidence 6 55455 45554 354444 3 4445799999988765
|
| >d1f61a_ c.1.12.7 (A:) Isocitrate lyase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Isocitrate lyase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.27 E-value=8.4e-12 Score=116.51 Aligned_cols=112 Identities=14% Similarity=0.065 Sum_probs=93.3
Q ss_pred CCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEE-eCcchhh----hhccCCCCccCCHHHHHHHHHHHHcc---
Q 026125 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL-VGDSAAM----VVHGHDTTLPITLEEMLVHCRAVARG--- 150 (243)
Q Consensus 79 ~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiIL-VGDSlgm----v~lG~~dT~~vTldeMi~h~~aV~Rg--- 150 (243)
..-..|+++.+++.++..++|||..+|++++++|+|.|. .|-.+++ ..+|+||.+.++++||...++.|.+.
T Consensus 51 ~~a~~Lr~lL~~~~~v~~~Ga~d~~~A~~~~kaGf~aiY~SG~~vaa~~s~s~~g~PD~gl~~~~ev~~~v~~I~~~~~~ 130 (418)
T d1f61a_ 51 RGAEVLWEQLHDLEWVNALGALTGNMAVQQVRAGLKAIYLSGWQVAGDANLSGHTYPDQSLYPANSVPQVVRRINNALQR 130 (418)
T ss_dssp HHHHHHHHHHHHSSCEEEEBCCSHHHHHHHHHTTCSCEEECHHHHHHHCCTTCCCCCSSSCSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEecccCCHHHHHHHHHhCCCEEEechHhhhcccccccCCccchhhhhhHHHHHHHHHHHHHHHH
Confidence 446679999999999999999999999999999999995 5544444 55999999999999999999999754
Q ss_pred ---------------cCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 151 ---------------AKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 151 ---------------a~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
...| ||+|..- +|+ ++.++.+++..++ ++||.+|+|||-.
T Consensus 131 ~d~~~~~~~~~~~~~~~~P-IIaDaDt-GfG-~~~nv~rtvk~~i-~AGaAgihiEDQ~ 185 (418)
T d1f61a_ 131 ADQIAKIEGDTSVENWLAP-IVADGEA-GFG-GALNVYELQKALI-AAGVAGSHWEDQL 185 (418)
T ss_dssp HHHHHHHHTCCSCSCSSCC-EEEECTT-CSS-SHHHHHHHHHHHH-HHTCSEEEEESBC
T ss_pred HHHHHHHhcccccccccCC-eEEeccc-ccc-cHHHHHHHHHHHH-HhCCcEEEEeccC
Confidence 3345 7877777 674 7888888887766 6999999999973
|
| >d1igwa_ c.1.12.7 (A:) Isocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Isocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=8.8e-11 Score=109.45 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=89.0
Q ss_pred HHHHHHhhhCC---CcEEEEecCCHHHHHHHHHcCCCEEE-eCcchhh----hhccCCCCccCCHHHHHHHHHHHHcccC
Q 026125 81 LTHLRQKHKNG---EPITMVTAYDYPSAVHLDSAGIDICL-VGDSAAM----VVHGHDTTLPITLEEMLVHCRAVARGAK 152 (243)
Q Consensus 81 v~~Lr~~kk~g---~~ItmlTAYD~~sA~iae~AGiDiIL-VGDSlgm----v~lG~~dT~~vTldeMi~h~~aV~Rga~ 152 (243)
-..|+++.++. .-+..++|||..+|++++++|+|.|. .|-.+++ ..+|+||.+..+++||...++.|.++..
T Consensus 49 A~kL~~lL~~~~~~~~v~~lGa~d~~~A~~~~kaGf~aiYvSG~~~sA~~~~~~~~~PD~gl~~~~~v~~~~~~I~~a~~ 128 (416)
T d1igwa_ 49 AAKMWRLLHGESKKGYINSLGALTGGQALQQAKAGIEAVYLSGWQVAADANLAASMYPDQSLYPANSVPAVVERINNTFR 128 (416)
T ss_dssp HHHHHHHHTTTSSSSSEEEEBCCSHHHHHHHHHHTCCCEEECHHHHHHHSCTTCCCCCSSSCSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccCeeeeCCcCCHHHHHHHHHcCCCEEEeccccccccccccCCCCCCcccccHHHHHHHHHHHHHHHH
Confidence 34466666433 35889999999999999999999995 5554444 3478999999999999999999988773
Q ss_pred ---------------------CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 153 ---------------------RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 153 ---------------------~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
...||+|..- +| .++..+.+.+..++ ++||.+|+|||-.
T Consensus 129 ~~d~~~~~~~~~~~~~~~~d~~lPIIADaDt-Gf-G~~~nv~r~vk~~i-~AGaagihiEDQ~ 188 (416)
T d1igwa_ 129 RADQIQWSAGIEPGDPRYVDYFLPIVADAEA-GF-GGVLNAFELMKAMI-EAGAAAVHFEDQL 188 (416)
T ss_dssp HHHHHHHHTTCCTTCTTCCCCCCCEEEECTT-CS-SSHHHHHHHHHHHH-HTTCSEEEEESBC
T ss_pred HHHHHHHhhhccccccccccccceeEEeccc-cc-CchHHHHHHHHHHH-hCCCeEEEeccCc
Confidence 1347888877 77 48899999887777 6999999999973
|
| >d1dqua_ c.1.12.7 (A:) Isocitrate lyase {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Isocitrate lyase species: Aspergillus nidulans [TaxId: 162425]
Probab=98.68 E-value=2.8e-08 Score=94.43 Aligned_cols=107 Identities=11% Similarity=0.075 Sum_probs=83.5
Q ss_pred HHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEE-eCcchhh----hhccCCCCccCCHHHHHHHHHHHHccc-------
Q 026125 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL-VGDSAAM----VVHGHDTTLPITLEEMLVHCRAVARGA------- 151 (243)
Q Consensus 84 Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiIL-VGDSlgm----v~lG~~dT~~vTldeMi~h~~aV~Rga------- 151 (243)
|++..++++.+..++|||...|... .+|+|+|. .|-.+++ ...|+||....++++|...++.|.++.
T Consensus 62 L~~~~~~~~~~~t~Ga~d~~qA~q~-~~gf~aiYlSGw~vAA~~~~~~~~~PD~~ly~~~svp~~v~~I~~a~~~~d~~q 140 (519)
T d1dqua_ 62 LERNFKNKEASFTYGCLDPTMVTQM-AKYLDTVYVSGWQSSSTASSTDEPSPDLADYPMNTVPNKVNHLWMAQLFHDRKQ 140 (519)
T ss_dssp HHHHHHHTCCEEEEBCCSHHHHHHH-HHHCSCEEECHHHHHHHCCTTCCCCSSCSCSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCceeecCcCCHHHHHHH-HhhCCEEEechHHHHhhhhcCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHH
Confidence 3344457899999999999999876 55899995 5544443 246899999999999999999997651
Q ss_pred -------------------CCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 152 -------------------KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 152 -------------------~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
-...||+|..- +|+ ++..+.+.+..++ ++||.+|+|||-.
T Consensus 141 ~~~~~~~~~~~~~~~~~~d~~~PIIADaDt-GfG-g~~nv~~lvk~~i-eAGaAgiHiEDQ~ 199 (519)
T d1dqua_ 141 REERMTTPKDQRHKVANVDYLRPIIADADT-GHG-GLTAVMKLTKLFV-ERGAAGIHIEDQA 199 (519)
T ss_dssp HHHHHSSCHHHHTTSCCCCCCCCEEEECTT-CSS-SHHHHHHHHHHHH-HTTCSEEEECSBC
T ss_pred HHhccccchhhhhcccccccccceEeeccc-ccc-chHHHHHHHHHHH-HcCCceEeehhcc
Confidence 11347888877 774 8889988887777 6999999999874
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=96.75 E-value=0.0043 Score=53.77 Aligned_cols=107 Identities=17% Similarity=0.236 Sum_probs=78.4
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCC-ccCCHHHHHHHHHHHHcccCCC-c-EEeeCCCCCCcCCHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGAKRP-L-LVGDLPFGTYESSTNQAVDTAVRIL 180 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT-~~vTldeMi~h~~aV~Rga~~~-f-vVaDmPfgsY~~s~e~Av~nA~Rl~ 180 (243)
+.+-.+++|+-.|.+-|..+---.|+.+. ..++.+|++...++.+.+...+ | |++-..--.- ...++|++-+....
T Consensus 98 ~v~~~~~aGvagi~iEDq~~pk~~g~~~~~~~~~~~e~~~ki~aa~~a~~~~d~~IiARTDa~~~-~g~~eAi~R~~aY~ 176 (289)
T d1muma_ 98 TVKSMIKAGAAGLHIEDQVGAKRCGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAV-EGLDAAIERAQAYV 176 (289)
T ss_dssp HHHHHHHHTCSEEEEECBCCCSSTTCCSCCCBCCHHHHHHHHHHHHHTCSSTTSEEEEEECCHHH-HCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEecCcccccccccccccceecHHHHHHHHHHHHHhcCCcchhheeccccccc-cCHHHHHHHHHHhh
Confidence 34567799999999999987766676555 5679999999999987776555 4 5544333222 36899999987776
Q ss_pred HHhCCCEEEeCCCCCchHHHHHHHHHc-CCceeec
Q 026125 181 KEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGH 214 (243)
Q Consensus 181 keaGAdaVKLEGg~~~~~~~i~~L~~~-GIPV~GH 214 (243)
++|||+|.+|+-.. .+.++.++++ ++|++..
T Consensus 177 -eAGAD~vf~~~~~~--~~~~~~~~~~~~~Pl~~~ 208 (289)
T d1muma_ 177 -EAGAEMLFPEAITE--LAMYRQFADAVQVPILAN 208 (289)
T ss_dssp -HTTCSEEEETTCCC--HHHHHHHHHHHCSCBEEE
T ss_pred -hcCCcEEEecCCCC--HHHHHHHHHhcCCCEEEe
Confidence 79999999998753 3336777765 6787643
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=96.35 E-value=0.031 Score=47.71 Aligned_cols=115 Identities=14% Similarity=0.062 Sum_probs=73.6
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccC---CCCccCCHHHHHHHHHHHHccc--CCCcEEeeCCCCCCcCCHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGH---DTTLPITLEEMLVHCRAVARGA--KRPLLVGDLPFGTYESSTNQAVDTAVR 178 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~---~dT~~vTldeMi~h~~aV~Rga--~~~fvVaDmPfgsY~~s~e~Av~nA~R 178 (243)
+.+-.+++|+..|.+-|...----|+ .....++.+||....++.++.. ++-+|++-.+--......+++++-+.+
T Consensus 96 tv~~~~~aGaagi~iEDq~~pk~~~~~~~~~~~~~~~~~~~~ki~aa~~~~~~~~~~i~ARtDa~~~~~gl~eai~R~~a 175 (275)
T d1s2wa_ 96 LVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLDEALKRAEA 175 (275)
T ss_dssp HHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHhccceeEeeccccccccccccccccccccHHHHHHHHHhhhhhccCcceeEEecchhhhhcCCHHHHHHHHHH
Confidence 56778899999999999875433333 2234788999998888887643 344566555431112368999999987
Q ss_pred HHHHhCCCEEEeCCCCCchHHHHHHH---HHcCCceeecc---CCccc
Q 026125 179 ILKEGGMDAIKLEGGSPSRITAARGI---VEAGIAVMGHV---GLTPQ 220 (243)
Q Consensus 179 l~keaGAdaVKLEGg~~~~~~~i~~L---~~~GIPV~GHi---GLtPQ 220 (243)
.. ++|||+|.+||.... ++.++.+ ...-+|++-.. |.+|.
T Consensus 176 Y~-eAGAD~vf~~~~~~~-~~~~~~~~~~~~~~~pl~~~~~~~~~~~~ 221 (275)
T d1s2wa_ 176 YR-NAGADAILMHSKKAD-PSDIEAFMKAWNNQGPVVIVPTKYYKTPT 221 (275)
T ss_dssp HH-HTTCSEEEECCCSSS-SHHHHHHHHHHTTCSCEEECCSTTTTSCH
T ss_pred HH-hcCCCeeeeccccCc-HHHHHHHHHhhcCCCCEEEecccccccHH
Confidence 77 799999999998532 2223323 33445665544 45553
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=96.19 E-value=0.034 Score=43.64 Aligned_cols=90 Identities=11% Similarity=0.079 Sum_probs=62.5
Q ss_pred hCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCC
Q 026125 89 KNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESS 168 (243)
Q Consensus 89 k~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s 168 (243)
....++++.++.+...+..+++.|+|+|.++..-+ +-.+.........+...+.+++..+.| |+++-. - .+
T Consensus 116 ~~~~~~v~~~~~t~~~a~~~~~~g~d~i~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~iP-Via~GG---I-~t 186 (222)
T d1y0ea_ 116 HAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGY----TSYTQGQLLYQNDFQFLKDVLQSVDAK-VIAEGN---V-IT 186 (222)
T ss_dssp HCTTSEEEEECSSHHHHHHHHHTTCSEEECTTTTS----STTSTTCCTTHHHHHHHHHHHHHCCSE-EEEESS---C-CS
T ss_pred hCCceEEeecCCCHHHHHHHHHcCCCeEEEeccCC----cccccCccchhhHHHHHHHHHhcCCCc-EEEeCC---C-CC
Confidence 45678899999999999999999999997653221 122222333333455567777888777 677743 3 36
Q ss_pred HHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 169 TNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 169 ~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
++++ .+++ +.|||+|.+ |.
T Consensus 187 ~~d~----~~~~-~~GAdgV~i-Gs 205 (222)
T d1y0ea_ 187 PDMY----KRVM-DLGVHCSVV-GG 205 (222)
T ss_dssp HHHH----HHHH-HTTCSEEEE-CH
T ss_pred HHHH----HHHH-HcCCCEEEE-ch
Confidence 7887 5677 599999998 44
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.81 E-value=0.028 Score=50.21 Aligned_cols=101 Identities=15% Similarity=0.171 Sum_probs=66.9
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCc-cCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTL-PITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~-~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
+..++++ ....+|..-++-++..|+.+.++|+|+|.||-+-|..+-...-|+ .+..-.-+..|..++++...| ||+|
T Consensus 151 i~~ik~~-~~~~~iIaGnVaT~e~a~~L~~aGAD~VkVGiG~Gs~ctTr~~tGvG~pq~sai~~~~~~a~~~~vp-IIAD 228 (378)
T d1jr1a1 151 IKYMKEK-YPNLQVIGGNVVTAAQAKNLIDAGVDALRVGMGCGSICITQEVLACGRPQATAVYKVSEYARRFGVP-VIAD 228 (378)
T ss_dssp HHHHHHH-STTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCC-EEEE
T ss_pred HHHHHHH-CCCCceeecccccHHHHHHHHHhCCCEEeeccccccccccccccccCcccchhhhHHHHhhcccCCc-eecc
Confidence 4445554 245788888999999999999999999999977666544111110 112222344566677777666 8999
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
=.+ .+.-+. .+.+ .+|||+|.+ |+
T Consensus 229 GGi----~~~gdi----akAl-a~GAd~VMm-Gs 252 (378)
T d1jr1a1 229 GGI----QNVGHI----AKAL-ALGASTVMM-GS 252 (378)
T ss_dssp SCC----CSHHHH----HHHH-HTTCSEEEE-ST
T ss_pred ccc----ccCCce----eeEE-Eeecceeee-cc
Confidence 544 355555 3455 589999998 44
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=95.61 E-value=0.036 Score=48.54 Aligned_cols=101 Identities=18% Similarity=0.273 Sum_probs=65.3
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCC-ccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT-~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
+..+++.+ .+.++..-++-++-.|..+.++|+|+|.||=.-|.++-....| ..+..---+.-|..++++.+.| ||+|
T Consensus 130 ik~ik~~~-~~~~viaGnV~t~~~a~~l~~~GaD~v~VGig~Gs~ctt~~~~G~g~p~~sai~~~~~~~~~~~vp-vIAd 207 (330)
T d1vrda1 130 LEMIKADY-PDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVP-IIAD 207 (330)
T ss_dssp HHHHHHHC-TTSCEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCC-EEEE
T ss_pred HHHHHHhC-CCCCEEeechhHHHHHHHHHHcCCCEEeeccccCccccccceeccccccchhHHHHHHHHHhcCce-EEec
Confidence 44455432 3567888899999999999999999999986655433222221 1111112234466677777766 8999
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
=.+ .+.-+. .+.+ .+|||+|.+ |+
T Consensus 208 GGi----~~~gdi----akAl-a~GAd~Vm~-Gs 231 (330)
T d1vrda1 208 GGI----RYSGDI----VKAL-AAGAESVMV-GS 231 (330)
T ss_dssp SCC----CSHHHH----HHHH-HTTCSEEEE-SH
T ss_pred CCc----ccCCch----heee-eccCceeee-cc
Confidence 544 345555 3455 489999998 44
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.52 E-value=0.06 Score=42.61 Aligned_cols=85 Identities=16% Similarity=0.115 Sum_probs=55.7
Q ss_pred CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHH
Q 026125 91 GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTN 170 (243)
Q Consensus 91 g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e 170 (243)
...+++.++.+...|+.+.++|+|+|.++-.- . -|+.........+ ...+++..+.| ++++= +. .|++
T Consensus 129 ~~~~v~~~v~t~~~a~~a~~~Gad~i~~~~~~-~--~~~~~~~~~~~~~----~~~~~~~~~ip-via~G---GI-~t~~ 196 (230)
T d1yxya1 129 PNQLLMADISTFDEGLVAHQAGIDFVGTTLSG-Y--TPYSRQEAGPDVA----LIEALCKAGIA-VIAEG---KI-HSPE 196 (230)
T ss_dssp TTCEEEEECSSHHHHHHHHHTTCSEEECTTTT-S--STTSCCSSSCCHH----HHHHHHHTTCC-EEEES---CC-CSHH
T ss_pred CCceEecCCCCHHHHHHHHhcCCCEEEeeccc-c--cccccccchHHHH----HHHHHhcCCCe-EEEeC---CC-CCHH
Confidence 46889999999999999999999999765221 1 1111111122222 23345556677 66763 44 4788
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCC
Q 026125 171 QAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 171 ~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
++ .+++ +.|||+|.+ |+
T Consensus 197 d~----~~al-~~GAd~V~v-Gs 213 (230)
T d1yxya1 197 EA----KKIN-DLGVAGIVV-GG 213 (230)
T ss_dssp HH----HHHH-TTCCSEEEE-CH
T ss_pred HH----HHHH-HcCCCEEEE-Ch
Confidence 88 5677 589999988 44
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=95.48 E-value=0.02 Score=47.79 Aligned_cols=79 Identities=22% Similarity=0.273 Sum_probs=60.0
Q ss_pred HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHH
Q 026125 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~k 181 (243)
..|+.++++|+|.+++. .|--...+-++++.|.++|+.+++.|+++-|.|. .++..+++.. .++.+
T Consensus 89 ~~a~~a~~~Gad~ilv~---------pP~~~~~s~~~i~~~~~~v~~~~~~pi~iYn~P~~~~~~~~~~~~----~~l~~ 155 (292)
T d1xkya1 89 DLTKKATEVGVDAVMLV---------APYYNKPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTV----VRLSE 155 (292)
T ss_dssp HHHHHHHHTTCSEEEEE---------CCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHH----HHHHT
T ss_pred HHHHHHHHcCCCEEEEC---------CCCCCCCCHHHHHHHHHHHhccCCCcEEEEeCCcccCCccCHHHH----hhhcc
Confidence 45677899999999875 2333446789999999999999999999999995 3454566654 34555
Q ss_pred HhCCCEEEeCCCC
Q 026125 182 EGGMDAIKLEGGS 194 (243)
Q Consensus 182 eaGAdaVKLEGg~ 194 (243)
.-+..++|-+.+.
T Consensus 156 ~p~v~giK~~~~~ 168 (292)
T d1xkya1 156 IENIVAIKDAGGD 168 (292)
T ss_dssp STTEEEEEECSSC
T ss_pred CCCEEEEeccccc
Confidence 5678899988775
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.42 E-value=0.034 Score=46.66 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=74.5
Q ss_pred hCCCcEEEEecCCH------HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC
Q 026125 89 KNGEPITMVTAYDY------PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF 162 (243)
Q Consensus 89 k~g~~ItmlTAYD~------~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf 162 (243)
.+++.-++.++.+. ..|+.++++|+|.+++. .|.-...|-++++.|.+.|...++.|+++-|.|.
T Consensus 73 ~~~~~~vi~g~~~~s~~~~i~~a~~a~~~Gad~v~i~---------~P~~~~~~~~~l~~~~~~v~~~~~~pi~lYn~p~ 143 (296)
T d1xxxa1 73 VGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVV---------TPYYSKPPQRGLQAHFTAVADATELPMLLYDIPG 143 (296)
T ss_dssp HTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEE---------CCCSSCCCHHHHHHHHHHHHTTCSSCEEEEECHH
T ss_pred hccccceEeccccchhHHHHHHHHHHHHhcCCeEEEE---------eccCCCCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 34554456666543 35788899999988765 2333346789999999999999999999999994
Q ss_pred -CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCcee
Q 026125 163 -GTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVM 212 (243)
Q Consensus 163 -gsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~ 212 (243)
.++..+++.. .++.+.-...++|-..+. ...+.+.+....+-+.
T Consensus 144 ~~g~~~~~~~~----~~L~~~p~i~giK~~s~d--~~~~~~~~~~~~~~~~ 188 (296)
T d1xxxa1 144 RSAVPIEPDTI----RALASHPNIVGVKDAKAD--LHSGAQIMADTGLAYY 188 (296)
T ss_dssp HHSSCCCHHHH----HHHHTSTTEEEEEECSCC--HHHHHHHHHHHCCEEE
T ss_pred ccCCCCCHHHH----HHhcCCCCeeeecccccc--HHHHHhhhcccccccc
Confidence 3443465544 455555678889977664 3444566666555443
|
| >d2dvta1 c.1.9.15 (A:1-325) Thermophilic reversible gamma-resorcylate decarboxylase {Rhizobium sp. MTP-10005 [TaxId: 267998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: Thermophilic reversible gamma-resorcylate decarboxylase species: Rhizobium sp. MTP-10005 [TaxId: 267998]
Probab=95.38 E-value=0.026 Score=47.37 Aligned_cols=69 Identities=13% Similarity=0.114 Sum_probs=52.1
Q ss_pred HHcccCCCcEE-eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC-------------CCchHHHHHHHHHcCCcee
Q 026125 147 VARGAKRPLLV-GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG-------------SPSRITAARGIVEAGIAVM 212 (243)
Q Consensus 147 V~Rga~~~fvV-aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg-------------~~~~~~~i~~L~~~GIPV~ 212 (243)
+++..|.-|+. +.+|. .+++++++-..|.+++.|..+|++.+- .+....+-+++.+.|+||+
T Consensus 87 ~~~~~P~Rf~~~~~v~~----~~~~~a~~el~r~~~~~g~~Gv~l~~~~~~~~~~~~~~~~d~~~~pi~~~~~e~~lpv~ 162 (325)
T d2dvta1 87 ECAKRPDRFLAFAALPL----QDPDAATEELQRCVNDLGFVGALVNGFSQEGDGQTPLYYDLPQYRPFWGEVEKLDVPFY 162 (325)
T ss_dssp HHHHCTTTEEEEECCCT----TSHHHHHHHHHHHHHTTCCCEEEEESSBCCTTCCSCBCTTSGGGHHHHHHHHHHTCCEE
T ss_pred HhccCCCeEEEEEEccc----cccchhhhhhhhhhhcccceEEEEeCCCcCCCCCCcccccCcccchHHHHHhhCCceEE
Confidence 44566776654 66666 267899999999999999999998642 1234567889999999999
Q ss_pred eccCCcc
Q 026125 213 GHVGLTP 219 (243)
Q Consensus 213 GHiGLtP 219 (243)
=|.|-.+
T Consensus 163 iH~~~~~ 169 (325)
T d2dvta1 163 LHPRNPL 169 (325)
T ss_dssp EECCCCC
T ss_pred EecCCCC
Confidence 9988543
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.32 E-value=0.053 Score=48.21 Aligned_cols=102 Identities=19% Similarity=0.261 Sum_probs=72.2
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCC-ccCCHHHHHHHHHHHHcccCCCcEEe
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGAKRPLLVG 158 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT-~~vTldeMi~h~~aV~Rga~~~fvVa 158 (243)
.+.+||+.+ ...+|..=++-++..|.-+.++|+|.|.||=.-|.++-....| ..+..-.-+..|...++....| ||+
T Consensus 138 ~i~~ik~~~-~~~~iIaGNV~T~e~a~~L~~aGaD~VkVGiG~Gs~CTTr~~tGvGvPq~sai~~~~~~~~~~~~~-iIA 215 (365)
T d1zfja1 138 KIAEIRAHF-PNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKT-IIA 215 (365)
T ss_dssp HHHHHHHHC-SSSCEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCE-EEE
T ss_pred HHHHHHhhC-CCcceeecccccHHHHHHHHhcCCceEEeeecccccccCcceeeeeccchhHHHHHHHHHHhCCce-EEe
Confidence 455666543 3567888899999999999999999999997666655444333 2344444566777777877665 899
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg 193 (243)
|=.+ .+.-+. .+.+ .+|||+|.+ |+
T Consensus 216 DGGi----~~~GDi----~KAl-a~GAd~VMl-G~ 240 (365)
T d1zfja1 216 DGGI----KYSGDI----VKAL-AAGGNAVML-GS 240 (365)
T ss_dssp ESCC----CSHHHH----HHHH-HTTCSEEEE-ST
T ss_pred cCCc----Ccchhh----hhhh-hccCCEEEe-cc
Confidence 9666 245565 3455 589999999 44
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=94.37 E-value=0.17 Score=42.01 Aligned_cols=93 Identities=12% Similarity=0.113 Sum_probs=66.0
Q ss_pred CCCcEEEEecCCHH------HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC
Q 026125 90 NGEPITMVTAYDYP------SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG 163 (243)
Q Consensus 90 ~g~~ItmlTAYD~~------sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg 163 (243)
+++.-++.++-+.. -|+.++++|+|.+++-- |.....|-+|++.|-+.|+..++.|+++=|.|+.
T Consensus 71 ~~~~~vi~gv~~~s~~~~iela~~a~~~Gad~i~~~p---------P~~~~~s~~~~~~~~~~v~~~~~~pi~iYn~P~~ 141 (293)
T d1f74a_ 71 KDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVT---------PFYYKFSFPEIKHYYDTIIAETGSNMIVYSIPFL 141 (293)
T ss_dssp TTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEECCC---------CCSSCCCHHHHHHHHHHHHHHHCCCEEEECCSSC
T ss_pred cCccccccccccccHHHHHHHHHHHHHcCCCEeeccC---------ccccccchHHHHHHHhcccccCCceEEEEeeccc
Confidence 44444555553332 47888999999998753 2234568899999999999999999999999974
Q ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 026125 164 TYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (243)
Q Consensus 164 sY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~ 194 (243)
+ ...-..+...++.+.-...+||.+.+.
T Consensus 142 t---g~~l~~~~l~~L~~~~~v~giK~~~~~ 169 (293)
T d1f74a_ 142 T---GVNMGIEQFGELYKNPKVLGVKFTAGD 169 (293)
T ss_dssp S---CHHHHHHHHHHHHTSTTEEEEEECCSC
T ss_pred e---eccccchhhhhhhhcccccccccCCCC
Confidence 3 122233344677776778899988775
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=94.22 E-value=0.1 Score=43.48 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=59.6
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC-CCCcCCHHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf-gsY~~s~e~Av~nA~Rl~ke 182 (243)
.|+.|+++|+|.+++.=. --...|-++++.|.+.|..+++.|+++-|.|. .++..+++.. .++.+-
T Consensus 88 ~~~~a~~~Gad~~~~~pP---------~~~~~~~~~i~~~f~~v~~~~~~pi~iYn~P~~~g~~~~~e~~----~~L~~~ 154 (292)
T d2a6na1 88 LTQRFNDSGIVGCLTVTP---------YYNRPSQEGLYQHFKAIAEHTDLPQILYNVPSATGCDLLPETV----GRLAKV 154 (292)
T ss_dssp HHHTTTTSSCCEEEEECC---------CSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSCCCCHHHH----HHHHTS
T ss_pred HhccHHhcCCcceeccCC---------CCCCCCHHHHHHHHHHHhhccCCcEEEEEeccccCCccCHHHH----HHHhcC
Confidence 466778899998876522 22346889999999999999999999999995 4565687765 455544
Q ss_pred hCCCEEEeCCCCC
Q 026125 183 GGMDAIKLEGGSP 195 (243)
Q Consensus 183 aGAdaVKLEGg~~ 195 (243)
-.+.++|-+.+..
T Consensus 155 pnv~giK~~~~~~ 167 (292)
T d2a6na1 155 KNIIGIKEATGNL 167 (292)
T ss_dssp TTEEEEEECSCCT
T ss_pred CCEEEEEeccCcc
Confidence 5789999886653
|
| >d2f6ka1 c.1.9.15 (A:2-307) Putative amidohydrolase LP2961 {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: Putative amidohydrolase LP2961 species: Lactobacillus plantarum [TaxId: 1590]
Probab=94.07 E-value=0.083 Score=43.96 Aligned_cols=72 Identities=18% Similarity=0.149 Sum_probs=52.6
Q ss_pred HHHHcccCCCcEE-eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC-------CCchHHHHHHHHHcCCceeeccC
Q 026125 145 RAVARGAKRPLLV-GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG-------SPSRITAARGIVEAGIAVMGHVG 216 (243)
Q Consensus 145 ~aV~Rga~~~fvV-aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg-------~~~~~~~i~~L~~~GIPV~GHiG 216 (243)
..+++.-|.-|+. +-+|+ .+++++++...|.+++.|+.+|++-.. .+....+-+.+.+.|+||+=|.|
T Consensus 80 ~~~~~~~P~Rf~~~a~vp~----~~~~~a~~el~r~~~~~G~~Gi~~~~~~~~~~~~dp~~~pi~~~~~e~~lpv~~H~~ 155 (306)
T d2f6ka1 80 KSLAQQYPDQLGYLASLPI----PYELDAVKTVQQALDQDGALGVTVPTNSRGLYFGSPVLERVYQELDARQAIVALHPN 155 (306)
T ss_dssp HHHHHHCTTTEEEEECCCT----TCHHHHHHHHHHHHHTSCCSEEEEESEETTEETTCGGGHHHHHHHHTTTCEEEEECC
T ss_pred HHHHHHCCCeEEEEeeccc----chhhHHHHHHHHHHhcccceEEEecCccccccCCCccchHHHHHHHHcCCceEeccC
Confidence 3455666666655 66665 257889888888888889999998652 12245678999999999999976
Q ss_pred Cccc
Q 026125 217 LTPQ 220 (243)
Q Consensus 217 LtPQ 220 (243)
-..+
T Consensus 156 ~~~~ 159 (306)
T d2f6ka1 156 EPAI 159 (306)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 5443
|
| >d2gwga1 c.1.9.15 (A:1-342) 4-oxalomesaconate hydratase LigJ {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: 4-oxalomesaconate hydratase LigJ species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=94.06 E-value=0.15 Score=41.63 Aligned_cols=78 Identities=21% Similarity=0.187 Sum_probs=54.4
Q ss_pred HHHHHHcccCCCcEE-eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC------------CCchHHHHHHHHHcCC
Q 026125 143 HCRAVARGAKRPLLV-GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG------------SPSRITAARGIVEAGI 209 (243)
Q Consensus 143 h~~aV~Rga~~~fvV-aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg------------~~~~~~~i~~L~~~GI 209 (243)
.+..+++.-|.-|+- +.+|.... .+++++++-..|.+++.|..+|++... .+....+.+.+.+.|+
T Consensus 95 ~~~~~~~~~p~r~~~~~~v~~~~~-~~~~~a~~e~~~~~~~~~~~gi~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~gl 173 (342)
T d2gwga1 95 LCYRVSQLFPDNFIGAAMLPQSPG-VDPKTCIPELEKCVKEYGFVAINLNPDPSGGHWTSPPLTDRIWYPIYEKMVELEI 173 (342)
T ss_dssp HHHHHHHHSTTTEEEEEECCCCTT-SCGGGGHHHHHHHHHTSCCCEEEECSCTTSSCCCSCCTTSGGGHHHHHHHHHHTC
T ss_pred HHHHHHhhCCCeeeeEeecccCcc-ccHHHHHHHHhhhHhhccceEEEEeccccccccCCCCCCCHHHHHHHHHhhcCCC
Confidence 334455666776654 66665333 477888888888888999999999631 1233457899999999
Q ss_pred ceeeccCCcccc
Q 026125 210 AVMGHVGLTPQA 221 (243)
Q Consensus 210 PV~GHiGLtPQ~ 221 (243)
||+=|.|.....
T Consensus 174 pv~~H~~~~~~~ 185 (342)
T d2gwga1 174 PAMIHVSTSCNT 185 (342)
T ss_dssp CEEECCCC----
T ss_pred eEEEccCCCcCc
Confidence 999999987654
|
| >d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: Macrophomate synthase species: Macrophoma commelinae [TaxId: 108330]
Probab=93.87 E-value=1.4 Score=37.54 Aligned_cols=119 Identities=12% Similarity=0.072 Sum_probs=74.4
Q ss_pred HHHHhhhCCCc-E--EEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHc-ccCCCcEEe
Q 026125 83 HLRQKHKNGEP-I--TMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR-GAKRPLLVG 158 (243)
Q Consensus 83 ~Lr~~kk~g~~-I--tmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~R-ga~~~fvVa 158 (243)
.||+..+++.+ + +.++--+...|.++..+|+|.|++= .+ .++.+++++...++++.. +......++
T Consensus 30 ~l~~~~~~~~~~~~G~~~~~~s~~~~e~~a~~g~D~v~iD---------~E-Hg~~~~~~~~~~i~a~~~~~~~~~~~iV 99 (299)
T d1izca_ 30 ALKDAMADPSKTLMGVAHGIPSTFVTKVLAATKPDFVWID---------VE-HGMFNRLELHDAIHAAQHHSEGRSLVIV 99 (299)
T ss_dssp HHHHHHHCGGGCEEEEEECSCCHHHHHHHHHTCCSEEEEE---------TT-TSCCCHHHHHHHHHHHHHHTTTCSEEEE
T ss_pred HHHHHhhccCCceeeeeccCCCHHHHHHHHcCCCCEEEEc---------CC-CCCCCHHHHHHHHHHHHHhCCCCCCeEE
Confidence 45655444333 2 2334568999999999999999874 11 236777777777676653 223333456
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCCceeeccCCcccc
Q 026125 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQA 221 (243)
Q Consensus 159 DmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GIPV~GHiGLtPQ~ 221 (243)
=.|. .++... .|++ +.||++|-+---. ...+.-+.+...-.|-.|.=|+-|..
T Consensus 100 Rvp~----~~~~~I----~~~L-D~Ga~GIivP~V~-s~eea~~~v~~~rypP~G~Rg~~~~~ 152 (299)
T d1izca_ 100 RVPK----HDEVSL----STAL-DAGAAGIVIPHVE-TVEEVREFVKEMYYGPIGRRSFSPWT 152 (299)
T ss_dssp ECCT----TCHHHH----HHHH-HHTCSEEEETTCC-CHHHHHHHHHHHSCTTTCCCCCCSTT
T ss_pred eCCC----CChHHH----HHHH-HhCcCeeeccccc-cHHHHHHHHHhhhhccCCCccccccc
Confidence 6665 244444 6778 6899999986543 34443233334456777888887765
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=93.81 E-value=0.14 Score=42.32 Aligned_cols=93 Identities=17% Similarity=0.128 Sum_probs=64.8
Q ss_pred hCCCcEEEEec--CCH----HHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCC
Q 026125 89 KNGEPITMVTA--YDY----PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF 162 (243)
Q Consensus 89 k~g~~ItmlTA--YD~----~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPf 162 (243)
.+++..++.++ .+. ..|+.|+++|+|.+++.=. --...|-++++.|.++|+++++.|+++=+.|.
T Consensus 67 ~~~~~~vi~gv~~~st~~ai~~a~~A~~~Gad~v~v~pP---------~y~~~s~~~i~~~~~~ia~a~~~pi~iYn~P~ 137 (295)
T d1o5ka_ 67 VDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTP---------YYNKPTQEGLYQHYKYISERTDLGIVVYNVPG 137 (295)
T ss_dssp HTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECC---------CSSCCCHHHHHHHHHHHHTTCSSCEEEEECHH
T ss_pred cccCCceEeecccccHHHHHHHHHHHHHcCCCEEEEeCC---------CCCCCCHHHHHHHHHHHHhccCCCeeEEeccc
Confidence 45544455555 333 3478889999999887522 12345789999999999999999999999994
Q ss_pred C-CCcCCHHHHHHHHHHHHHH-hCCCEEEeCCCC
Q 026125 163 G-TYESSTNQAVDTAVRILKE-GGMDAIKLEGGS 194 (243)
Q Consensus 163 g-sY~~s~e~Av~nA~Rl~ke-aGAdaVKLEGg~ 194 (243)
. ++..+++.. .++.++ ....++|-+.+.
T Consensus 138 ~~g~~~~~~~~----~~l~~~~~ni~~iK~~~~~ 167 (295)
T d1o5ka_ 138 RTGVNVLPETA----ARIAADLKNVVGIKEANPD 167 (295)
T ss_dssp HHSCCCCHHHH----HHHHHHCTTEEEEEECCCC
T ss_pred hhcccchhHHH----HHHHhhcccccceecCCcc
Confidence 3 455677776 455543 346788877764
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=93.55 E-value=0.25 Score=42.09 Aligned_cols=93 Identities=25% Similarity=0.237 Sum_probs=66.9
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
|+.--+.+.++|=.+.-.+--|...|+-.+++||.++.--.|--.+-+|..+ .+..+.|+.-.+.| ||+|
T Consensus 114 tl~Aae~Lv~eGF~VlpY~~~D~v~ak~Le~~Gc~avMPlgsPIGSg~Gl~n---------~~~l~~i~~~~~vP-vIvD 183 (251)
T d1xm3a_ 114 TLKASEQLLEEGFIVLPYTSDDVVLARKLEELGVHAIMPGASPIGSGQGILN---------PLNLSFIIEQAKVP-VIVD 183 (251)
T ss_dssp HHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTCSCBEECSSSTTCCCCCSC---------HHHHHHHHHHCSSC-BEEE
T ss_pred HHHHHHHHHhCCcEEEEecCCCHHHHHHHHHcCChhHHHhhhhhhcCCCcCC---------hHHHHHHHhcCCcc-EEEe
Confidence 5666667777876655557789999999999999999744444445567666 34446666666666 7888
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
=.-| ++.+| ...| |-|||+|-+-
T Consensus 184 AGIG----~pSdA----a~AM-ElG~daVLvN 206 (251)
T d1xm3a_ 184 AGIG----SPKDA----AYAM-ELGADGVLLN 206 (251)
T ss_dssp SCCC----SHHHH----HHHH-HTTCSEEEES
T ss_pred cCCC----CHHHH----HHHH-HccCCEEEec
Confidence 7663 56777 4567 6999999885
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=93.01 E-value=0.24 Score=43.94 Aligned_cols=90 Identities=12% Similarity=0.142 Sum_probs=61.7
Q ss_pred CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCC-ccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCH
Q 026125 91 GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESST 169 (243)
Q Consensus 91 g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT-~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~ 169 (243)
.-+|..=++-++..|....++|+|.|.||=.-|..+-...-| ..+..-.-+..|..++++...| ||+|=.+ .+.
T Consensus 192 ~v~vIaGNV~T~e~a~~L~~~GaD~VkVGiGpGs~CtTr~~~GvG~pq~sai~~~~~~~~~~~vp-iIADGGi----~~~ 266 (388)
T d1eepa_ 192 NLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNIC-IIADGGI----RFS 266 (388)
T ss_dssp TCEEEEEEECSHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCE-EEEESCC----CSH
T ss_pred CCceeeccccCHHHHHHHHhcCCCeeeeccccccccccccccccCcchHHHHHHHHHHhccCCce-EEecccc----CcC
Confidence 567888899999999999999999999987665543222211 1223333345555666776655 8999655 345
Q ss_pred HHHHHHHHHHHHHhCCCEEEe
Q 026125 170 NQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 170 e~Av~nA~Rl~keaGAdaVKL 190 (243)
-+. .+.+ .+|||+|.+
T Consensus 267 Gdi----~KAl-a~GAd~VMl 282 (388)
T d1eepa_ 267 GDV----VKAI-AAGADSVMI 282 (388)
T ss_dssp HHH----HHHH-HHTCSEEEE
T ss_pred Cce----eeeE-Eeccceeec
Confidence 565 3455 589999998
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=92.33 E-value=0.42 Score=41.90 Aligned_cols=101 Identities=17% Similarity=0.115 Sum_probs=66.4
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCC-ccCCHHHHHHHHHHHHc------ccC
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVAR------GAK 152 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT-~~vTldeMi~h~~aV~R------ga~ 152 (243)
++..++++.....+|..=++-++..++...++|+|+|.||=+-|..+--..-| ..+..-..+..|...++ +.
T Consensus 141 ~i~~ir~~~~~~~~IiAGNVaT~e~~~~L~~aGaD~vkVGIG~Gs~CTTr~~tGvG~Pq~sAv~e~a~~~~~~~~~~~~- 219 (362)
T d1pvna1 141 TIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGI- 219 (362)
T ss_dssp HHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHTCBCCCHHHHHHHHHHHHHHHHHHHSE-
T ss_pred HHHHHHHhhccceeeecccccCHHHHHHHHHhCCcEEEecccccccccchhhhccCCchHHHHHHHHHHHHHhhhhccc-
Confidence 45666665545567877899999999999999999999996655543222222 22334444555555544 22
Q ss_pred CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 153 ~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
...||+|=.. .++-+. .+.+ .+|||+|.+
T Consensus 220 ~v~iiaDGGi----~~~gdi----~KAl-a~GAd~VM~ 248 (362)
T d1pvna1 220 YIPVCSDGGI----VYDYHM----TLAL-AMGADFIML 248 (362)
T ss_dssp ECCEEEESCC----CSHHHH----HHHH-HTTCSEEEE
T ss_pred CCceeecccc----Ccccce----eEEE-EEeccceee
Confidence 2348999655 356666 3556 589999998
|
| >d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: 2-dehydro-3-deoxy-galactarate aldolase species: Escherichia coli [TaxId: 562]
Probab=92.12 E-value=1.6 Score=36.13 Aligned_cols=116 Identities=15% Similarity=0.103 Sum_probs=80.6
Q ss_pred HHHHhhhCCCcEEE--EecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeC
Q 026125 83 HLRQKHKNGEPITM--VTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (243)
Q Consensus 83 ~Lr~~kk~g~~Itm--lTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDm 160 (243)
.||++.++|++..- ++-.+...+.++..+|+|.+++- . -.++.+++++...++++. ..+.+ .++=.
T Consensus 6 ~lk~~l~~g~~~~G~~~~~~~p~~~ei~a~~G~Dfv~iD---------~-EHg~~~~~~~~~~i~a~~-~~g~~-~~VRv 73 (253)
T d1dxea_ 6 KFKAALAAKQVQIGCWSALSNPISTEVLGLAGFDWLVLD---------G-EHAPNDISTFIPQLMALK-GSASA-PVVRV 73 (253)
T ss_dssp HHHHHHHTTCCEEEEEECSCSHHHHHHHTTSCCSEEEEE---------S-SSSSCCHHHHHHHHHHTT-TCSSE-EEEEC
T ss_pred HHHHHHHCCCCEEEEEecCCCHHHHHHHHcCCCCEEEEe---------c-ccCCCChhHHHHHHHHHh-ccCCC-ceecC
Confidence 48888899998753 46689999999999999999875 1 135678888888887764 44444 35666
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHH-cCCceeeccCCcccc
Q 026125 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE-AGIAVMGHVGLTPQA 221 (243)
Q Consensus 161 PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~-~GIPV~GHiGLtPQ~ 221 (243)
|- .++..+ .|++ +.||++|-+---. ..++ ++.+++ .--|=-|.=|+-|..
T Consensus 74 p~----~~~~~i----~~~L-D~Ga~GIivP~v~-s~ee-a~~~v~~~~ypP~G~Rg~~~~~ 124 (253)
T d1dxea_ 74 PT----NEPVII----KRLL-DIGFYNFLIPFVE-TKEE-AELAVASTRYPPEGIRGVSVSH 124 (253)
T ss_dssp SS----SCHHHH----HHHH-HTTCCEEEESCCC-SHHH-HHHHHHTTSCTTTCCCCCCSSS
T ss_pred CC----CCHHHH----HHHH-hcCccEEEecccC-CHHH-HHHHHHhheeCCCCCcCcCcce
Confidence 65 244555 6788 6999999887664 3445 455555 345655666666654
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=91.77 E-value=0.28 Score=43.43 Aligned_cols=76 Identities=20% Similarity=0.282 Sum_probs=51.3
Q ss_pred cCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHH
Q 026125 99 AYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVR 178 (243)
Q Consensus 99 AYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~R 178 (243)
..+...|..+-++|+|+|++= +.+||.. .++..++.++..-++-.||+. +- .+.+.+ ..
T Consensus 150 ~~~~~ra~~L~~aG~D~ivID-----~AhG~s~-------~~~~~i~~ik~~~~~v~vIaG----NV-~T~e~a----~~ 208 (388)
T d1eepa_ 150 IDTIERVEELVKAHVDILVID-----SAHGHST-------RIIELIKKIKTKYPNLDLIAG----NI-VTKEAA----LD 208 (388)
T ss_dssp TTHHHHHHHHHHTTCSEEEEC-----CSCCSSH-------HHHHHHHHHHHHCTTCEEEEE----EE-CSHHHH----HH
T ss_pred HHHHHHHHHHHhhccceeeee-----ccccchH-------HHHHHHHHHHHHCCCCceeec----cc-cCHHHH----HH
Confidence 356788888889999999874 2344443 345555667666666656643 33 466776 56
Q ss_pred HHHHhCCCEEEeCCCCCc
Q 026125 179 ILKEGGMDAIKLEGGSPS 196 (243)
Q Consensus 179 l~keaGAdaVKLEGg~~~ 196 (243)
|+ ++|||+||+=-|...
T Consensus 209 L~-~~GaD~VkVGiGpGs 225 (388)
T d1eepa_ 209 LI-SVGADCLKVGIGPGS 225 (388)
T ss_dssp HH-TTTCSEEEECSSCST
T ss_pred HH-hcCCCeeeecccccc
Confidence 77 689999999777543
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=91.75 E-value=1.1 Score=36.75 Aligned_cols=94 Identities=22% Similarity=0.263 Sum_probs=63.0
Q ss_pred HHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 026125 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (243)
Q Consensus 108 ae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAd 186 (243)
.-+.|+|.++++.+.|= ...+|.+|-..-++.+++.++ +..+++.... .|.+++++.|.+.. +.|||
T Consensus 33 l~~~Gv~gl~~~G~tGE-------~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~----~s~~~~i~~a~~a~-~~Gad 100 (292)
T d1xkya1 33 LIDNGTTAIVVGGTTGE-------SPTLTSEEKVALYRHVVSVVDKRVPVIAGTGS----NNTHASIDLTKKAT-EVGVD 100 (292)
T ss_dssp HHHTTCCEEEESSTTTT-------GGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC----SCHHHHHHHHHHHH-HTTCS
T ss_pred HHHCCCCEEEECeEccc-------hhhCCHHHHHHHHHHHHHHhCCCceEEEecCc----ccHHHHHHHHHHHH-HcCCC
Confidence 44689999998766643 246899998888888877553 4446666533 47899999987655 79999
Q ss_pred EEEeCC------CCCchHHHHHHHHHc-CCceee
Q 026125 187 AIKLEG------GSPSRITAARGIVEA-GIAVMG 213 (243)
Q Consensus 187 aVKLEG------g~~~~~~~i~~L~~~-GIPV~G 213 (243)
++-+-- +.+......+.+.++ ++|++=
T Consensus 101 ~ilv~pP~~~~~s~~~i~~~~~~v~~~~~~pi~i 134 (292)
T d1xkya1 101 AVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVML 134 (292)
T ss_dssp EEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEE
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHhccCCCcEEE
Confidence 999842 222233334555544 677763
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=90.46 E-value=1.1 Score=38.27 Aligned_cols=131 Identities=15% Similarity=0.115 Sum_probs=80.3
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEe--C--cchhhhhcc----CCCCccCCHHH----HHHHH
Q 026125 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV--G--DSAAMVVHG----HDTTLPITLEE----MLVHC 144 (243)
Q Consensus 77 ~~~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILV--G--DSlgmv~lG----~~dT~~vTlde----Mi~h~ 144 (243)
+.+|..++++..++ | ...|+.|.+||+|.|=+ + .=+....-- -.|--.=++|. .++..
T Consensus 131 ~~lt~~eI~~ii~~---------f-~~AA~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv 200 (337)
T d1z41a1 131 VEMSAEKVKETVQE---------F-KQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREII 200 (337)
T ss_dssp EECCHHHHHHHHHH---------H-HHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHH---------H-HHHHHHHHHcCCCeEEeeccCcceeeeecCCccccccccccchhhhhhhHHHHHH
Confidence 46899998887542 1 46788899999999943 2 111111111 12222334443 45667
Q ss_pred HHHHcccCCCcEE----eeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCc-------------hHHHHHHHHHc
Q 026125 145 RAVARGAKRPLLV----GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------------RITAARGIVEA 207 (243)
Q Consensus 145 ~aV~Rga~~~fvV----aDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~-------------~~~~i~~L~~~ 207 (243)
++|++..+.++.+ .|.-.+++ +.++.+..+..+. +.|+|.+.+..|... ....||..+
T Consensus 201 ~air~~~~~~~~vr~~~~~~~~~g~--~~~~~~~~~~~l~-~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~-- 275 (337)
T d1z41a1 201 DEVKQVWDGPLFVRVSASDYTDKGL--DIADHIGFAKWMK-EQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQA-- 275 (337)
T ss_dssp HHHHHHCCSCEEEEEECCCCSTTSC--CHHHHHHHHHHHH-HTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH--
T ss_pred HHHhhhhcccceEEecccccccCcc--chhhhHHHHHHHH-HcCCcccccccccccccccccCCcccHHHHHHHHHhc--
Confidence 8888888888776 23333333 7899998887665 699999999877421 112345554
Q ss_pred CCceeeccCCc-cccc
Q 026125 208 GIAVMGHVGLT-PQAI 222 (243)
Q Consensus 208 GIPV~GHiGLt-PQ~~ 222 (243)
+|||++-=|++ |+.+
T Consensus 276 ~~pvi~~G~i~~~~~a 291 (337)
T d1z41a1 276 DMATGAVGMITDGSMA 291 (337)
T ss_dssp CCEEEECSSCCSHHHH
T ss_pred CceEEEeCCcCCHHHH
Confidence 59999764552 5443
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=90.44 E-value=1.2 Score=37.10 Aligned_cols=87 Identities=11% Similarity=0.098 Sum_probs=51.0
Q ss_pred CCcEEEE---ecCCHHHHHHHHHcCCCEEEeCcchhhhh-----------ccCCCCccC-CHHHHHHHHHHHHcccCCCc
Q 026125 91 GEPITMV---TAYDYPSAVHLDSAGIDICLVGDSAAMVV-----------HGHDTTLPI-TLEEMLVHCRAVARGAKRPL 155 (243)
Q Consensus 91 g~~Itml---TAYD~~sA~iae~AGiDiILVGDSlgmv~-----------lG~~dT~~v-TldeMi~h~~aV~Rga~~~f 155 (243)
+.|+..- +..|+..|+.+.++|+|.|.|+..-|... .|.+....+ +.+.+ ..+....+.-.
T Consensus 158 ~~~vivk~v~~~~~~~~a~~~~~~GaD~i~v~~~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~l----~~~~~~~~~v~ 233 (329)
T d1p0ka_ 158 SVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASL----AEIRSEFPAST 233 (329)
T ss_dssp SSCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHH----HHHHHHCTTSE
T ss_pred CCCcEEEecCCcchHHHHHHHHhcCCCEEEEcCCCCCCccccchhhcccCccchhHhHHHHHHHH----HHHHhhcCCce
Confidence 3455543 44899999999999999998764433211 223322222 23332 23333444455
Q ss_pred EEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 156 vVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
|++|= +. .+..++ .+.+ ..|||+|.+
T Consensus 234 viadG---GI-r~g~Dv----~KAl-alGAdaV~i 259 (329)
T d1p0ka_ 234 MIASG---GL-QDALDV----AKAI-ALGASCTGM 259 (329)
T ss_dssp EEEES---SC-CSHHHH----HHHH-HTTCSEEEE
T ss_pred EEEcC---Cc-ccHHHH----HHHH-HcCCCchhc
Confidence 88985 44 367777 4566 589999999
|
| >d2hbva1 c.1.9.15 (A:3-333) 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD species: Pseudomonas fluorescens [TaxId: 294]
Probab=90.41 E-value=0.72 Score=37.67 Aligned_cols=116 Identities=14% Similarity=0.115 Sum_probs=68.0
Q ss_pred ecCCHHH-HHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHH---HHHHHHHHcccCCCcEE-eeCCCCCCcCCHHHH
Q 026125 98 TAYDYPS-AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEM---LVHCRAVARGAKRPLLV-GDLPFGTYESSTNQA 172 (243)
Q Consensus 98 TAYD~~s-A~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeM---i~h~~aV~Rga~~~fvV-aDmPfgsY~~s~e~A 172 (243)
..||... -...|++|||.-++.-+... .++......+.+.. =..+..+++..|..|+. +.+|. .+++++
T Consensus 54 ~~~~~~~~l~~Md~~gid~av~~~~~~~--~~~~~~~~~~~~~~~~~Nd~~~~~~~~~p~R~~~~~~v~~----~~~~~a 127 (331)
T d2hbva1 54 ALWDPAFRIEEMDAQGVDVQVTCATPVM--FGYTWEANKAAQWAERMNDFALEFAAHNPQRIKVLAQVPL----QDLDLA 127 (331)
T ss_dssp GGTCHHHHHHHHHHHTCSEEEEEECGGG--CCTTSCHHHHHHHHHHHHHHHHHHHTTCTTTEEECBCCCT----TSHHHH
T ss_pred ccCCHHHHHHHHHHcCCCEEEEeccccc--cccccchhhhhhHHHHhhHHHHHHHhhccCcceeeeEeec----ccchhh
Confidence 3466432 23358999997554212211 22222111111110 12233455666776665 55554 267888
Q ss_pred HHHHHHHHHHhCCCEEEeCCCC-------CchHHHHHHHHHcCCceeeccCCccc
Q 026125 173 VDTAVRILKEGGMDAIKLEGGS-------PSRITAARGIVEAGIAVMGHVGLTPQ 220 (243)
Q Consensus 173 v~nA~Rl~keaGAdaVKLEGg~-------~~~~~~i~~L~~~GIPV~GHiGLtPQ 220 (243)
++-..|..+ .|+.++|+-... +....+-+++.+.|+||+=|.|-.+.
T Consensus 128 ~~el~r~~~-~g~~g~~l~~~~~~~~~~d~~~~p~~~~~~e~~~pv~iH~~~~~~ 181 (331)
T d2hbva1 128 CKEASRAVA-AGHLGIQIGNHLGDKDLDDATLEAFLTHCANEDIPILVHPWDMMG 181 (331)
T ss_dssp HHHHHHHHH-HTCCCEEEESCBTTBCTTSHHHHHHHHHHHHTTCCEEEECCSCSC
T ss_pred hhHHHHhhh-hcceeeeecccccCcccccchhhHHHHHHhccCCceEEecCCCCC
Confidence 888888874 789999985431 23446678899999999999886554
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=90.40 E-value=1.8 Score=37.21 Aligned_cols=72 Identities=18% Similarity=0.332 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHH
Q 026125 100 YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 100 YD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl 179 (243)
-|...+..+-++|+|++++- +.+|++. .++..++.++..-++.++|+. .- .+.+.+ ..|
T Consensus 98 ~~~e~~~~li~agvd~ivId-----~A~G~~~-------~~~~~ik~ik~~~~~~~viaG----nV-~t~~~a----~~l 156 (330)
T d1vrda1 98 ETMERVEKLVKAGVDVIVID-----TAHGHSR-------RVIETLEMIKADYPDLPVVAG----NV-ATPEGT----EAL 156 (330)
T ss_dssp THHHHHHHHHHTTCSEEEEC-----CSCCSSH-------HHHHHHHHHHHHCTTSCEEEE----EE-CSHHHH----HHH
T ss_pred HHHHHHHHHHHCCCCEEEEe-----cCCCCch-------hHHHHHHHHHHhCCCCCEEee----ch-hHHHHH----HHH
Confidence 45566667778899998874 3344443 334445556555555556643 22 355555 556
Q ss_pred HHHhCCCEEEeCCC
Q 026125 180 LKEGGMDAIKLEGG 193 (243)
Q Consensus 180 ~keaGAdaVKLEGg 193 (243)
+ ++|||+||+--|
T Consensus 157 ~-~~GaD~v~VGig 169 (330)
T d1vrda1 157 I-KAGADAVKVGVG 169 (330)
T ss_dssp H-HTTCSEEEECSS
T ss_pred H-HcCCCEEeeccc
Confidence 7 599999999433
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.01 E-value=1.5 Score=36.80 Aligned_cols=93 Identities=23% Similarity=0.178 Sum_probs=62.1
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEee
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaD 159 (243)
|+.--+.+.++|=...-.+--|...|+-.|++|+.++.--.|-..+-.|..+. +..+.++.-.+-| +++|
T Consensus 116 tl~Aa~~Lv~egF~Vlpy~~~D~v~ak~le~~Gc~~vMplgsPIGsg~Gi~n~---------~~l~~i~~~~~vp-vivd 185 (243)
T d1wv2a_ 116 TLKAAEQLVKDGFDVMVYTSDDPIIARQLAEIGCIAVMPLAGLIGSGLGICNP---------YNLRIILEEAKVP-VLVD 185 (243)
T ss_dssp HHHHHHHHHTTTCEEEEEECSCHHHHHHHHHSCCSEEEECSSSTTCCCCCSCH---------HHHHHHHHHCSSC-BEEE
T ss_pred HHHHHHHhhcCceEEEeccCCCHHHHhHHHHcCceeeeecccccccccccccH---------HHHHhccccCCcc-eEee
Confidence 55555566666544444455677888999999999998555555555666553 2334455545555 7888
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 160 mPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
=.-| ++.+| ...| |.|+|+|-+-
T Consensus 186 AGIg----~psda----a~AM-ElG~dgVLvn 208 (243)
T d1wv2a_ 186 AGVG----TASDA----AIAM-ELGCEAVLMN 208 (243)
T ss_dssp SCCC----SHHHH----HHHH-HHTCSEEEES
T ss_pred cccC----CHHHH----HHHH-HccCCEEEec
Confidence 7663 56777 4567 6999999885
|
| >d1igwa_ c.1.12.7 (A:) Isocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Isocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=89.90 E-value=0.82 Score=41.30 Aligned_cols=116 Identities=19% Similarity=0.133 Sum_probs=73.9
Q ss_pred HHHHHHHHcCCCEEEeCcchh-hhhccCCCC-ccCCHHHHHHHHHHHHccc---C-CCcEE--eeC--------------
Q 026125 103 PSAVHLDSAGIDICLVGDSAA-MVVHGHDTT-LPITLEEMLVHCRAVARGA---K-RPLLV--GDL-------------- 160 (243)
Q Consensus 103 ~sA~iae~AGiDiILVGDSlg-mv~lG~~dT-~~vTldeMi~h~~aV~Rga---~-~~fvV--aDm-------------- 160 (243)
-+.+..++||+-.|-+-|-+. ---.||-+. ..|+.+||+...++.+.+. . ..+|| .|-
T Consensus 169 r~vk~~i~AGaagihiEDQ~~~~KkCGHl~gK~lv~~~e~~~ki~AA~~a~d~~~~~~~IiARTDA~~a~li~sd~d~~D 248 (416)
T d1igwa_ 169 ELMKAMIEAGAAAVHFEDQLASVKKCGHMGGKVLVPTQEAIQKLVAARLCADVTGVPTLLVARTDADAADLITSDCDPYD 248 (416)
T ss_dssp HHHHHHHHTTCSEEEEESBCGGGCCCC----CEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECTTTCCEESCCCCGGG
T ss_pred HHHHHHHhCCCeEEEeccCccccchhcccCCCccCCHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhhhccchhcc
Confidence 457889999999999999874 566776554 7899999999999887553 2 23455 443
Q ss_pred ---------CCC--CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHH-cCCce---eeccCCcccc
Q 026125 161 ---------PFG--TYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE-AGIAV---MGHVGLTPQA 221 (243)
Q Consensus 161 ---------Pfg--sY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~-~GIPV---~GHiGLtPQ~ 221 (243)
|-| -+....++|++-+.... + |||.|-+|........ ++.+++ -..|+ |=-.|.+|..
T Consensus 249 ~~fi~g~Rt~eG~yr~~~G~d~aI~R~~aya-~-gADli~~Et~~~~~e~-a~~fa~~v~~~~p~~~l~yn~SPsf 321 (416)
T d1igwa_ 249 SEFITGERTSEGFFRTHAGIEQAISRGLAYA-P-YADLVWCETSTPDLEL-ARRFAQAIHAKYPGKLLAYNCSPSF 321 (416)
T ss_dssp GGGEEEEECTTSCEEECCSHHHHHHHHHHHG-G-GCSEEEECCSSCCHHH-HHHHHHHHHHHSTTCEEEEECC---
T ss_pred cCcccCccCccccccccCChHHHHHHHHHhh-c-cccEEeeecCCCCHHH-HHHHHHhcCCCchhHhhccCCCCCc
Confidence 111 12246899999987655 5 8999999998654333 333333 12232 3345777753
|
| >d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate aldolase/transaldolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Thermus thermophilus [TaxId: 274]
Probab=89.32 E-value=1.3 Score=35.73 Aligned_cols=92 Identities=13% Similarity=0.124 Sum_probs=60.4
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHc--ccCCCc
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR--GAKRPL 155 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~R--ga~~~f 155 (243)
-+.-++++.+.|-++.+-.+|+...|.+|.++|+|.|. +| -+ --.|++. + +.+.....+.+ +.+ +-
T Consensus 99 G~~a~~~L~~~Gi~vn~T~vfs~~Qa~~Aa~aga~yispyvg-R~--~d~g~d~-----~-~~~~~~~~~~~~~~~~-tk 168 (211)
T d1wx0a1 99 GLKACKRLSAEGIKVNMTLIFSANQALLAARAGASYVSPFLG-RV--DDISWDG-----G-ELLREIVEMIQVQDLP-VK 168 (211)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSHHHHHHHHHTTCSEEEEBHH-HH--HHTTSCH-----H-HHHHHHHHHHHHTTCS-CE
T ss_pred hhHHHHHHhhcCCceeEEEecCHHHHHHHHHcCCCEEEEeee-cc--hhccccc-----h-hHHHHHHHHHHhcccc-ce
Confidence 35557778889999999999999999999999999884 55 11 1223222 2 22322333332 333 33
Q ss_pred EEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 156 vVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
|++ .|+ .++++. .++. +.|||.|-+-
T Consensus 169 il~----AS~-R~~~~~----~~~~-~~G~d~vTi~ 194 (211)
T d1wx0a1 169 VIA----ASI-RHPRHV----TEAA-LLGADIATMP 194 (211)
T ss_dssp EEE----BCC-CSHHHH----HHHH-HTTCSEEEEC
T ss_pred eEe----eec-CCHHHH----HHHH-HcCCCEEEeC
Confidence 444 377 588888 4455 4899999774
|
| >d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Thermotoga maritima [TaxId: 2336]
Probab=89.02 E-value=1.5 Score=35.76 Aligned_cols=101 Identities=14% Similarity=0.211 Sum_probs=66.2
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHHc--ccCCCc
Q 026125 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR--GAKRPL 155 (243)
Q Consensus 80 tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~R--ga~~~f 155 (243)
.+.-++++.+.|-++.+-.+|+...|.+|.++|++.|. +| -+.-.|.+ .+ +++..++.+.+ +.+...
T Consensus 92 G~~ai~~L~~~Gi~~n~Tavfs~~Qa~~Aa~aga~yispy~g---R~~d~g~d-----~~-~~i~~~~~~~~~~~~~tki 162 (218)
T d1vpxa_ 92 GIKAVKTLSAEGIKTNVTLVFSPAQAILAAKAGATYVSPFVG---RMDDLSND-----GM-RMLGEIVEIYNNYGFETEI 162 (218)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSHHHHHHHHHHTCSEEEEBHH---HHHHTTSC-----HH-HHHHHHHHHHHHHTCSCEE
T ss_pred chHHHHHHHHcCCceeeEEecCHHHHHHHHhcCCCEEEeeec---chhhhccc-----ch-hhHHHHHHHHhhhccccee
Confidence 45667788899999999999999999999999999884 44 12223332 22 33433344433 444443
Q ss_pred EEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHH
Q 026125 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE 206 (243)
Q Consensus 156 vVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~ 206 (243)
+.+ |+ .++++.. +++ +.|||.+-+- +.+++.|.+
T Consensus 163 l~A-----S~-r~~~~v~----~a~-~~G~d~iTip------~~v~~~l~~ 196 (218)
T d1vpxa_ 163 IAA-----SI-RHPMHVV----EAA-LMGVDIVTMP------FAVLEKLFK 196 (218)
T ss_dssp EEB-----SC-CSHHHHH----HHH-HHTCSEEEEC------HHHHHHHTC
T ss_pred eee-----cc-CCHHHHH----HHH-HcCCCEEEcC------HHHHHHHHC
Confidence 333 67 4888884 445 4899999875 455666643
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=88.99 E-value=0.53 Score=38.80 Aligned_cols=78 Identities=23% Similarity=0.313 Sum_probs=56.7
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCC-CcEEeeCCC-CCCcCCHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR-PLLVGDLPF-GTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~-~fvVaDmPf-gsY~~s~e~Av~nA~Rl~k 181 (243)
.|+.++++|+|.+++-- |--...+-++++.|.+.|...++. |+++-+.|. .++..+++.. .++.+
T Consensus 89 ~a~~a~~~Gad~~~v~~---------p~~~~~~~~~~~~~~~~~~~~~~~~~ii~y~~P~~~g~~l~~~~l----~~L~~ 155 (295)
T d1hl2a_ 89 LAASAKRYGFDAVSAVT---------PFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPARSGVKLTLDQI----NTLVT 155 (295)
T ss_dssp HHHHHHHHTCSEEEEEC---------CCSSCCCHHHHHHHHHHHHHHHTTSCEEEEECHHHHCCCCCHHHH----HHHHT
T ss_pred HHHHHHhcCCceeeeee---------ccccCCChHHHHHHHHHHhcccCcCcccccccccccccccccccc----ccccc
Confidence 47889999999987642 222346789999998888886654 777788874 4555677665 45655
Q ss_pred HhCCCEEEeCCCC
Q 026125 182 EGGMDAIKLEGGS 194 (243)
Q Consensus 182 eaGAdaVKLEGg~ 194 (243)
.-...++|.+.+.
T Consensus 156 ~pnvvgiK~~~~~ 168 (295)
T d1hl2a_ 156 LPGVGALKQTSGD 168 (295)
T ss_dssp STTEEEEEECCCC
T ss_pred Ccchhhhcccccc
Confidence 5578999999885
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.87 E-value=2.2 Score=36.28 Aligned_cols=97 Identities=12% Similarity=0.069 Sum_probs=67.4
Q ss_pred CCCHHHHHHhhhC-CCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 78 RVTLTHLRQKHKN-GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 78 ~~tv~~Lr~~kk~-g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
..+..++..+++. +.|+..-+.-....|..+.++|+|.|.|...-|-.. |+.+-+.+....-.+++. ++..|
T Consensus 203 ~~~~~~i~~l~~~~~~pii~Kgi~~~~da~~a~~~G~d~i~vsnhggr~~----d~~~~~~~~l~~i~~~~~---~~~~i 275 (349)
T d1tb3a1 203 SFCWNDLSLLQSITRLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQL----DEVSASIDALREVVAAVK---GKIEV 275 (349)
T ss_dssp CCCHHHHHHHHTTCCSCEEEEEECSHHHHHHHHHTTCSEEEECCGGGTSS----CSBCCHHHHHHHHHHHHT---TSSEE
T ss_pred CCCHHHHHHHHHhcCCCcccchhhhhHHHHHHHHhhccceeeeccccccc----cccccchhhcceeeeccC---CCeeE
Confidence 4567777765443 689999999999999999999999999886655544 344445555444333332 22338
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
++|=. .. +-.++ .+.+ ..||++|-+
T Consensus 276 iadGG---IR-~G~Dv----~KAL-ALGA~~V~i 300 (349)
T d1tb3a1 276 YMDGG---VR-TGTDV----LKAL-ALGARCIFL 300 (349)
T ss_dssp EEESS---CC-SHHHH----HHHH-HTTCSCEEE
T ss_pred EeccC---cC-cHHHH----HHHH-HcCCCEEEE
Confidence 89954 43 66777 3556 489999988
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=88.61 E-value=0.69 Score=39.02 Aligned_cols=124 Identities=15% Similarity=0.047 Sum_probs=73.9
Q ss_pred HHHHhhhCCCc--EEEEecCCHH------HHHHHHHcCCCEEEeC----cchhh-----hhccCCCCccCCHHHHHHHHH
Q 026125 83 HLRQKHKNGEP--ITMVTAYDYP------SAVHLDSAGIDICLVG----DSAAM-----VVHGHDTTLPITLEEMLVHCR 145 (243)
Q Consensus 83 ~Lr~~kk~g~~--ItmlTAYD~~------sA~iae~AGiDiILVG----DSlgm-----v~lG~~dT~~vTldeMi~h~~ 145 (243)
.|+++++++++ |.-+|+=|+. .+..++++|+|+|=+| |.++= -..=..--..+++++.+..++
T Consensus 7 ~f~~lk~~~~~ali~y~t~G~P~~~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~~~~~ 86 (267)
T d1qopa_ 7 LFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLA 86 (267)
T ss_dssp HHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCceEEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCcccccchHHHhhhhhcccccchhhhhhhhhh
Confidence 36666666666 4566775543 2445678999999888 44421 000001113468888888888
Q ss_pred HHHccc-CCCcEE-eeC-CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC-CchHHHHHHHHHcCCcee
Q 026125 146 AVARGA-KRPLLV-GDL-PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVM 212 (243)
Q Consensus 146 aV~Rga-~~~fvV-aDm-PfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~-~~~~~~i~~L~~~GIPV~ 212 (243)
.+++-. ..|+++ ... |+..|+ .++- .+..+++|+|++-+-|=. ++.....+.+.+.|+..+
T Consensus 87 ~~r~~~~~~pivlm~Y~N~i~~~G--~~~f----~~~~~~~Gv~GliipDlP~ee~~~~~~~~~~~~l~~I 151 (267)
T d1qopa_ 87 IIREKHPTIPIGLLMYANLVFNNG--IDAF----YARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPI 151 (267)
T ss_dssp HHHHHCSSSCEEEEECHHHHHTTC--HHHH----HHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEE
T ss_pred hhcccccccceEEEeeccchhhcC--chHH----HHHHHhcCCCceeccchhhhhhHHHHHhhhccCceEE
Confidence 888764 456544 211 222342 3333 344568999999998863 344556677788887654
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=88.27 E-value=3.9 Score=33.15 Aligned_cols=136 Identities=20% Similarity=0.300 Sum_probs=77.6
Q ss_pred HHHHHHhhhCCCcEEEEecCCHH-----------HHHHHHHcCCCEE-EeCcchhhhhccCCCCccCCHHHHHHHHHHHH
Q 026125 81 LTHLRQKHKNGEPITMVTAYDYP-----------SAVHLDSAGIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVA 148 (243)
Q Consensus 81 v~~Lr~~kk~g~~ItmlTAYD~~-----------sA~iae~AGiDiI-LVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~ 148 (243)
+...+++.+ +.++-..++-||| .++.+-+.|.|-| +|=+ .+...-| .++......++|+
T Consensus 42 v~~a~~~l~-~s~v~v~~VigFP~G~~~~~~k~~e~~~ai~~GA~EiD~V~n-~~~~~~g-------~~~~v~~ei~~v~ 112 (211)
T d1ub3a_ 42 VAWVRARYP-HAPFRLVTVVGFPLGYQEKEVKALEAALACARGADEVDMVLH-LGRAKAG-------DLDYLEAEVRAVR 112 (211)
T ss_dssp HHHHHHHCT-TCSSEEEEEESTTTCCSCHHHHHHHHHHHHHTTCSEEEEECC-HHHHHTT-------CHHHHHHHHHHHH
T ss_pred HHHHHHHcc-CCCCceEEEEecccccCcHHHHHHHHHHHHHcCCCeEEEeec-cchhhcC-------CHHHHHHHHHHHH
Confidence 333445443 3445555555665 3556667899877 5543 2333223 3455555667777
Q ss_pred cccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCC---chHHHHHHHHHcCCceeeccCCcccccccc
Q 026125 149 RGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP---SRITAARGIVEAGIAVMGHVGLTPQAISVL 225 (243)
Q Consensus 149 Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~---~~~~~i~~L~~~GIPV~GHiGLtPQ~~~~~ 225 (243)
+.++...+=+=++. +| .+.++ ++.+.++..++|||-||..-|.. -.+.-++.|.+. +-+++
T Consensus 113 ~~~~~~~lKVIlEt-~~-L~~~e-i~~a~~~a~~aGadfiKTSTG~~~~gat~e~v~~m~~~---~~~~~---------- 176 (211)
T d1ub3a_ 113 EAVPQAVLKVILET-GY-FSPEE-IARLAEAAIRGGADFLKTSTGFGPRGASLEDVALLVRV---AQGRA---------- 176 (211)
T ss_dssp HHSTTSEEEEECCG-GG-SCHHH-HHHHHHHHHHHTCSEEECCCSSSSCCCCHHHHHHHHHH---HTTSS----------
T ss_pred HhccCCceEEEecc-cc-CCHHH-HHHHHHHHHHhccceEEecCCCCCCCCCHHHHHHHHHH---hCCCc----------
Confidence 77765543233444 33 36677 45556777789999999965521 123335655552 11222
Q ss_pred cCccccc--cCHHhhcccc
Q 026125 226 GGFRPQG--KNVTSAVKVF 242 (243)
Q Consensus 226 GGykvqG--kt~~~A~~ll 242 (243)
|.|+-| ||.++|.+++
T Consensus 177 -~iKasGGIrt~~~a~~~l 194 (211)
T d1ub3a_ 177 -QVKAAGGIRDRETALRML 194 (211)
T ss_dssp -EEEEESSCCSHHHHHHHH
T ss_pred -eEECcCCCCCHHHHHHHH
Confidence 477777 8999988765
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=88.10 E-value=1.2 Score=37.27 Aligned_cols=96 Identities=13% Similarity=0.145 Sum_probs=70.3
Q ss_pred CCCHHHHHHhhh-CCCcEEEEecCCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcE
Q 026125 78 RVTLTHLRQKHK-NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (243)
Q Consensus 78 ~~tv~~Lr~~kk-~g~~ItmlTAYD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fv 156 (243)
.++..+++.+.+ .+.|+..-+..+...|..+.+.|+|.+.+.+.-+-...+-+++..+. .+ |+...+.+ |
T Consensus 208 ~~~~~~i~~l~~~~~~~i~~kgv~~~~~~~~a~~~g~~~~~~s~~gg~~~~~~~~~~~~l-~~-------i~~~~~~~-v 278 (353)
T d1p4ca_ 208 SFNWEALRWLRDLWPHKLLVKGLLSAEDADRCIAEGADGVILSNHGGRQLDCAISPMEVL-AQ-------SVAKTGKP-V 278 (353)
T ss_dssp TCCHHHHHHHHHHCCSEEEEEEECCHHHHHHHHHTTCSEEEECCGGGTSCTTCCCGGGTH-HH-------HHHHHCSC-E
T ss_pred CCCHHHHHHHHhccccchhhhcchhhhhHHHHHhcCCchhhhcccccccccccccchhcc-cc-------hhcccccc-e
Confidence 456666655432 55789999999999999999999999999988887777777765542 22 33344555 6
Q ss_pred EeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 157 VaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
++| |+.. |..++ .+.+ ..|||+|-+-
T Consensus 279 ias---GGIR-~G~Dv----~KAL-aLGAd~vgig 304 (353)
T d1p4ca_ 279 LID---SGFR-RGSDI----VKAL-ALGAEAVLLG 304 (353)
T ss_dssp EEC---SSCC-SHHHH----HHHH-HTTCSCEEES
T ss_pred eec---CCcC-chHHH----HHHH-HcCCCEEEEc
Confidence 777 6774 77777 4566 4899999884
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.83 E-value=2.9 Score=34.61 Aligned_cols=83 Identities=19% Similarity=0.220 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCCCEEEeCcchhhhh--ccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHH
Q 026125 102 YPSAVHLDSAGIDICLVGDSAAMVV--HGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 102 ~~sA~iae~AGiDiILVGDSlgmv~--lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl 179 (243)
...|+.++++|+|++-+.=|.-+.. .++........+.....+++|++.++.|+++ =++. .+ .+.++. .+.
T Consensus 119 ~~~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~pv~v-Kl~~-~~-~~~~~i----~~~ 191 (312)
T d1gtea2 119 MELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFA-KLTP-NV-TDIVSI----ARA 191 (312)
T ss_dssp HHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCSSCEEE-EECS-CS-SCHHHH----HHH
T ss_pred HHHHHHhccCCCCeEeeccCCCCcccccccchhhhhhHHHHHHHHHHHhhccCCceee-cccc-cc-hhHHHH----HHH
Confidence 3468889999999996654433321 1222222234555667788898888888554 3332 23 244443 355
Q ss_pred HHHhCCCEEEeC
Q 026125 180 LKEGGMDAIKLE 191 (243)
Q Consensus 180 ~keaGAdaVKLE 191 (243)
++++|+++|-+-
T Consensus 192 ~~~~g~~gi~~~ 203 (312)
T d1gtea2 192 AKEGGADGVTAT 203 (312)
T ss_dssp HHHHTCSEEEEC
T ss_pred HHHhcccceEEE
Confidence 567999999763
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=86.21 E-value=0.75 Score=40.46 Aligned_cols=96 Identities=23% Similarity=0.323 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHH
Q 026125 100 YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 100 YD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl 179 (243)
-|...+..+-++|+|+|++ | +.+||.. .++..++.++...++.+||+. .- .+.+.+ ..|
T Consensus 107 ~~~er~~~l~~agvd~ivI-D----~A~G~s~-------~~~~~i~~ik~~~~~~~iIaG----NV-~T~e~a----~~L 165 (365)
T d1zfja1 107 DTFERAEALFEAGADAIVI-D----TAHGHSA-------GVLRKIAEIRAHFPNRTLIAG----NI-ATAEGA----RAL 165 (365)
T ss_dssp THHHHHHHHHHHTCSEEEE-C----CSCTTCH-------HHHHHHHHHHHHCSSSCEEEE----EE-CSHHHH----HHH
T ss_pred hHHHHHHHHHHcCCCEEEE-E----CCccccc-------chhHHHHHHHhhCCCcceeec----cc-ccHHHH----HHH
Confidence 4456677777899999987 3 3345443 445556667776777666642 34 466666 567
Q ss_pred HHHhCCCEEEeCCCCCch-----------------HHHHHHHHHcCCceeeccCC
Q 026125 180 LKEGGMDAIKLEGGSPSR-----------------ITAARGIVEAGIAVMGHVGL 217 (243)
Q Consensus 180 ~keaGAdaVKLEGg~~~~-----------------~~~i~~L~~~GIPV~GHiGL 217 (243)
+ ++|||+||+--|.... .+..++..+.|+||++-=|+
T Consensus 166 ~-~aGaD~VkVGiG~Gs~CTTr~~tGvGvPq~sai~~~~~~~~~~~~~iIADGGi 219 (365)
T d1zfja1 166 Y-DAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGI 219 (365)
T ss_dssp H-HTTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCC
T ss_pred H-hcCCceEEeeecccccccCcceeeeeccchhHHHHHHHHHHhCCceEEecCCc
Confidence 7 6999999996543211 12223445678888765443
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=86.06 E-value=4.3 Score=32.69 Aligned_cols=97 Identities=14% Similarity=0.106 Sum_probs=56.6
Q ss_pred HHHHHHh-hhCCCcEEEEec---CCHHHHHHHHHcCCCEEEeCcchhhhh--------ccC------CCCccCCHHHHHH
Q 026125 81 LTHLRQK-HKNGEPITMVTA---YDYPSAVHLDSAGIDICLVGDSAAMVV--------HGH------DTTLPITLEEMLV 142 (243)
Q Consensus 81 v~~Lr~~-kk~g~~ItmlTA---YD~~sA~iae~AGiDiILVGDSlgmv~--------lG~------~dT~~vTldeMi~ 142 (243)
..++... .+-+.|+..-.+ .|...|+.+.++|+|.|.|..--|... .|. .+.. ++.-+.+.
T Consensus 148 ~~~~~~~~~~~~~p~~~k~v~~~~~~e~a~~~~~aGvd~i~vsn~gg~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~al~ 226 (310)
T d1vcfa1 148 LVERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIG-IPTARAIL 226 (310)
T ss_dssp HHHHHHHHCSCSSCEEEECSSSCCCHHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCS-CBHHHHHH
T ss_pred HHHHHHHHhhccCCceeeeecCcccHHHHHHHHHcCCCEEEeccccccchhhcccccccCchhhhhhhhcc-hHHHHHHH
Confidence 3344333 334568777544 788899999999999998754332110 111 1111 23334444
Q ss_pred HHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 026125 143 HCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (243)
Q Consensus 143 h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKL 190 (243)
.++.++ +.--|++|=.. .+..++ .+.+ ..|||+|.+
T Consensus 227 ~~~~~~---~~i~Ii~dGGI----r~g~Dv----~KAL-alGAdaV~i 262 (310)
T d1vcfa1 227 EVREVL---PHLPLVASGGV----YTGTDG----AKAL-ALGADLLAV 262 (310)
T ss_dssp HHHHHC---SSSCEEEESSC----CSHHHH----HHHH-HHTCSEEEE
T ss_pred HHHhhc---CCCeEEeCCCC----CchHHH----HHHH-HhCCCEeeE
Confidence 444443 33347888655 366777 4556 489999998
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=85.41 E-value=3.2 Score=34.60 Aligned_cols=125 Identities=14% Similarity=0.142 Sum_probs=75.7
Q ss_pred HHHHhhhCCCcEEE--EecCCH------HHHHHHHHcCCCEEEeCc----chhh--h---hccCCCCccCCHHHHHHHHH
Q 026125 83 HLRQKHKNGEPITM--VTAYDY------PSAVHLDSAGIDICLVGD----SAAM--V---VHGHDTTLPITLEEMLVHCR 145 (243)
Q Consensus 83 ~Lr~~kk~g~~Itm--lTAYD~------~sA~iae~AGiDiILVGD----Slgm--v---~lG~~dT~~vTldeMi~h~~ 145 (243)
.|.+.+++|+|..+ +|+=|+ ..+...+++|+|+|=+|- .++= + ..=..=...+++++.++..+
T Consensus 7 ~f~~~~~~~~~~li~y~~aG~P~~~~~~~~l~~l~~~G~DiiElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~ 86 (261)
T d1rd5a_ 7 TMAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLR 86 (261)
T ss_dssp HHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCeEEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCCcceeeeeeeccccCcchhhhhhhhh
Confidence 46666677766544 466332 235567889999998772 2210 0 00000123478999999999
Q ss_pred HHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCC-CchHHHHHHHHHcCCceeecc
Q 026125 146 AVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVMGHV 215 (243)
Q Consensus 146 aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~-~~~~~~i~~L~~~GIPV~GHi 215 (243)
.++.-.+.|+++ ++|- |+- ++.-..-++++|+|++-+-|=. ++...+.+.+.+.|+.-+==+
T Consensus 87 ~~r~~~~~p~il-----m~Y~-n~~--~~~~~~~~~~~GvdG~IipDlp~eE~~~~~~~~~~~gl~~I~lv 149 (261)
T d1rd5a_ 87 EVTPELSCPVVL-----LSYY-KPI--MFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLT 149 (261)
T ss_dssp HHGGGCSSCEEE-----ECCS-HHH--HSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEE
T ss_pred cccccccCceee-----eeee-cch--hhHHHHHHHhcCceeeeecCccHHHHHHHHHHHhccccceEEEe
Confidence 998877777653 2341 221 1222223467999999998842 345666778888887655443
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=84.97 E-value=1.3 Score=38.89 Aligned_cols=74 Identities=19% Similarity=0.275 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHH
Q 026125 100 YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (243)
Q Consensus 100 YD~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl 179 (243)
.|...+.+..++|+|++++--+ +|+. +.++...+.++.--++..+|+- .- .+.+.| ..|
T Consensus 119 ~~~~~~~~l~~agv~vi~id~a-----~g~~-------~~~~~~i~~ik~~~~~~~iIaG----nV-aT~e~a----~~L 177 (378)
T d1jr1a1 119 DDKYRLDLLALAGVDVVVLDSS-----QGNS-------IFQINMIKYMKEKYPNLQVIGG----NV-VTAAQA----KNL 177 (378)
T ss_dssp HHHHHHHHHHHHTCCEEEECCS-----SCCS-------HHHHHHHHHHHHHSTTCEEEEE----EE-CSHHHH----HHH
T ss_pred HHHHHHHHHHhhccceEeeecc-----Cccc-------hhhHHHHHHHHHHCCCCceeec----cc-ccHHHH----HHH
Confidence 3455677888899999987533 2222 3345555666666665555532 33 466666 567
Q ss_pred HHHhCCCEEEeCCCCC
Q 026125 180 LKEGGMDAIKLEGGSP 195 (243)
Q Consensus 180 ~keaGAdaVKLEGg~~ 195 (243)
+ ++|||+||+.+|..
T Consensus 178 ~-~aGAD~VkVGiG~G 192 (378)
T d1jr1a1 178 I-DAGVDALRVGMGCG 192 (378)
T ss_dssp H-HHTCSEEEECSSCS
T ss_pred H-HhCCCEEeeccccc
Confidence 7 59999999988854
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.72 E-value=2.6 Score=35.71 Aligned_cols=115 Identities=18% Similarity=0.243 Sum_probs=65.8
Q ss_pred CCCCCCCCCCCCCCCC---CHHHHHHhhhCCCcEEE-EecCC-----------HHHHHHHHHcCCCEEEeCcc-hhhhhc
Q 026125 64 NSVYGGPKPQNPNQRV---TLTHLRQKHKNGEPITM-VTAYD-----------YPSAVHLDSAGIDICLVGDS-AAMVVH 127 (243)
Q Consensus 64 ~~~~~~~~~~~~~~~~---tv~~Lr~~kk~g~~Itm-lTAYD-----------~~sA~iae~AGiDiILVGDS-lgmv~l 127 (243)
+..||+... .+-+. .+..+|+.....-+|.+ ++++| ...++.++++|+|++.+... .....-
T Consensus 180 tDeYGGs~e--nR~Rf~~Eii~air~~vg~d~~v~~R~s~~d~~~~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~ 257 (330)
T d1ps9a1 180 SDQWGGDYR--NRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIP 257 (330)
T ss_dssp CSTTSSSHH--HHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSC
T ss_pred cccCCccHh--hhhHHHHHHHHHHHHHcCCCceeEecccccccccCCCCHHHHHHHHHHHHHhhhhhhhccccccccccc
Confidence 467876421 11223 34455555433333332 56666 35677889999999865321 111111
Q ss_pred cCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 026125 128 GHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (243)
Q Consensus 128 G~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLE 191 (243)
. ...+..-......++.|++.++.|++++ |.+ .++++| -++++++.||.|-+-
T Consensus 258 ~--~~~~~~~~~~~~~~~~ik~~~~~pvi~~----G~i-~~~~~a----e~~l~~g~~D~V~~g 310 (330)
T d1ps9a1 258 T--IATPVPRGAFSWVTRKLKGHVSLPLVTT----NRI-NDPQVA----DDILSRGDADMVSMA 310 (330)
T ss_dssp S--SSTTSCTTTTHHHHHHHTTSCSSCEEEC----SSC-CSHHHH----HHHHHTTSCSEEEES
T ss_pred c--cCCCCcchhHHHHHHHHHhhCCceEEEe----CCC-CCHHHH----HHHHHCCCcchhHhh
Confidence 1 1122222334567788999888886554 355 478887 567877779999873
|
| >d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Escherichia coli [TaxId: 562]
Probab=84.18 E-value=1.7 Score=35.25 Aligned_cols=102 Identities=15% Similarity=0.259 Sum_probs=65.0
Q ss_pred CCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCCEEE--eCcchhhhhccCCCCccCCHHHHHHHHHHHH-cccCCCc
Q 026125 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVA-RGAKRPL 155 (243)
Q Consensus 79 ~tv~~Lr~~kk~g~~ItmlTAYD~~sA~iae~AGiDiIL--VGDSlgmv~lG~~dT~~vTldeMi~h~~aV~-Rga~~~f 155 (243)
..+.-++++.+.|-++.+-.+|+...|.+|.++|++.+. +| .+ --.|.+ .++.+-...+.+. .+.+.-
T Consensus 91 ~g~~ai~~L~~~Gi~vn~Tavfs~~Qa~~Aa~aga~yvspy~g-R~--~d~g~d-----g~~~i~~~~~~~~~~~~~tk- 161 (220)
T d1l6wa_ 91 EGLAAIKMLKAEGIPTLGTAVYGAAQGLLSALAGAEYVAPYVN-RI--DAQGGS-----GIQTVTDLHQLLKMHAPQAK- 161 (220)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECSHHHHHHHHHHTCSEEEEBHH-HH--HHTTSC-----HHHHHHHHHHHHHHHCTTCE-
T ss_pred cccchhhhhhhcccchhhhhcccHHHHHHhhhcCCcEEeeeee-eh--hhcccC-----ChHHHHHHHHHHHhcCCCce-
Confidence 345667778888999999999999999999999999883 55 11 122322 2232222223232 244433
Q ss_pred EEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHH
Q 026125 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIV 205 (243)
Q Consensus 156 vVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~ 205 (243)
|++ .|+ .++++. .+.. +.|||.|-+- +++++.|.
T Consensus 162 Il~----AS~-R~~~~v----~~~~-~~G~d~iTip------~~v~~~l~ 195 (220)
T d1l6wa_ 162 VLA----ASF-KTPRQA----LDCL-LAGCESITLP------LDVAQQMI 195 (220)
T ss_dssp EEE----BCC-SSHHHH----HHHH-HTTCSEEEEC------HHHHHHTT
T ss_pred Eee----hhc-CCHHHH----HHHH-HcCCCEEEcC------HHHHHHHh
Confidence 444 377 488887 4555 5899999885 44556553
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=83.60 E-value=4.3 Score=32.82 Aligned_cols=93 Identities=9% Similarity=0.049 Sum_probs=60.7
Q ss_pred HHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 026125 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (243)
Q Consensus 108 ae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAd 186 (243)
.-+.|+|-++++.|.|-. -.+|.+|-..-.+.+.+.++ +..|++..-. .|.+++++.|... ++.|||
T Consensus 31 l~~~Gv~Gi~v~GstGE~-------~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~----~st~~ai~~a~~A-~~~Gad 98 (295)
T d1o5ka_ 31 QLENGVNALIVLGTTGES-------PTVNEDEREKLVSRTLEIVDGKIPVIVGAGT----NSTEKTLKLVKQA-EKLGAN 98 (295)
T ss_dssp HHHTTCCEEEESSGGGTG-------GGCCHHHHHHHHHHHHHHHTTSSCEEEECCC----SCHHHHHHHHHHH-HHHTCS
T ss_pred HHHcCCCEEEECeeccch-------hhCCHHHHHHHhhhhccccccCCceEeeccc----ccHHHHHHHHHHH-HHcCCC
Confidence 335799999888776542 36899997777777666554 4446665432 4788999988654 479999
Q ss_pred EEEeCCC------CCchHHHHHHHHH-cCCcee
Q 026125 187 AIKLEGG------SPSRITAARGIVE-AGIAVM 212 (243)
Q Consensus 187 aVKLEGg------~~~~~~~i~~L~~-~GIPV~ 212 (243)
+|-+--- .+......+.+.+ .++|++
T Consensus 99 ~v~v~pP~y~~~s~~~i~~~~~~ia~a~~~pi~ 131 (295)
T d1o5ka_ 99 GVLVVTPYYNKPTQEGLYQHYKYISERTDLGIV 131 (295)
T ss_dssp EEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEE
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHHhccCCCee
Confidence 9988532 1122333455554 456665
|
| >d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Putative aldolase YihT species: Salmonella typhimurium [TaxId: 90371]
Probab=83.02 E-value=2.6 Score=35.15 Aligned_cols=85 Identities=15% Similarity=0.114 Sum_probs=51.3
Q ss_pred HHHHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC---CCcCCHHHHHHHHHH
Q 026125 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG---TYESSTNQAVDTAVR 178 (243)
Q Consensus 102 ~~sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg---sY~~s~e~Av~nA~R 178 (243)
-.+...+.+.|.|++-+ .+.+|-++... ...+++.....-|+....||++-=+|++ ....+.++.+..|.|
T Consensus 109 ~~sv~~a~~~GadaVk~-----lv~~~~d~~~e-~~~~~~~~l~~~c~~~glp~llE~l~~~~~~~~~~~~~~~i~~a~r 182 (291)
T d1to3a_ 109 KINAQAVKRDGAKALKL-----LVLWRSDEDAQ-QRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAK 182 (291)
T ss_dssp SCCHHHHHHTTCCEEEE-----EEEECTTSCHH-HHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHH
T ss_pred ccCHHHHHhccCceEEE-----EEeeCCcccHH-HHHHHHHHHHHHHHHcCCcceEEEEecCCCcccccchHHHHHHHHH
Confidence 34667777889998854 23344333321 1223444455556778888887444332 112344666666677
Q ss_pred HHHHhCCCEEEeCC
Q 026125 179 ILKEGGMDAIKLEG 192 (243)
Q Consensus 179 l~keaGAdaVKLEG 192 (243)
..-|.|||.+|+|-
T Consensus 183 ~~~e~GaDi~K~~~ 196 (291)
T d1to3a_ 183 ELGDSGADLYKVEM 196 (291)
T ss_dssp HHTTSSCSEEEECC
T ss_pred HHHhcCCcEEEEec
Confidence 76689999999984
|
| >d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Staphylococcus aureus [TaxId: 1280]
Probab=82.02 E-value=8.5 Score=31.91 Aligned_cols=99 Identities=22% Similarity=0.178 Sum_probs=65.9
Q ss_pred HHHHHHcCCCEEEeCc-chhhhhccCCCCccCCHHHHHHHHHHHHcccC--CCcEEeeCCCCCCcCCHHHHHHHHHHHHH
Q 026125 105 AVHLDSAGIDICLVGD-SAAMVVHGHDTTLPITLEEMLVHCRAVARGAK--RPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (243)
Q Consensus 105 A~iae~AGiDiILVGD-Slgmv~lG~~dT~~vTldeMi~h~~aV~Rga~--~~fvVaDmPfgsY~~s~e~Av~nA~Rl~k 181 (243)
|.-.-+.|+|+|=+|. |- .|...+|+.+|=+....-|.+... ...+..| +|. ++-+ .+.+
T Consensus 32 ~~~m~~~GAdiIDIGaeST------rPga~~is~~eE~~Rl~pvi~~l~~~~~~iSID----T~~--~eVa----~~al- 94 (264)
T d1ad1a_ 32 VKAMMDEGADIIDVGGVST------RPGHEMITVEEELNRVLPVVEAIVGFDVKISVD----TFR--SEVA----EACL- 94 (264)
T ss_dssp HHHHHHTTCSEEEEESCCC------STTCCCCCHHHHHHHHHHHHHHHTTSSSEEEEE----CSC--HHHH----HHHH-
T ss_pred HHHHHHCCCCEEEECCccC------CCCCCcCCHHHHHHhhhhHhhhhcccCcccchh----hhh--HHHH----HHHH-
Confidence 3345577999997774 22 366788999987766655555332 4555688 573 4444 4456
Q ss_pred HhCCCEEE-eCCCCCchHHHHHHHHHcCCcee-eccCCcccc
Q 026125 182 EGGMDAIK-LEGGSPSRITAARGIVEAGIAVM-GHVGLTPQA 221 (243)
Q Consensus 182 eaGAdaVK-LEGg~~~~~~~i~~L~~~GIPV~-GHiGLtPQ~ 221 (243)
+.||+.|+ +.||... +...+.+.+.+.|++ -|-+=+|+.
T Consensus 95 ~~Ga~iINDVs~g~~d-~~~~~~va~~~~~~ilmH~~~~~~~ 135 (264)
T d1ad1a_ 95 KLGVDIINDQWAGLYD-HRMFQVVAKYDAEIVLMHNGNGNRD 135 (264)
T ss_dssp HTTCCEEEETTTTSSC-THHHHHHHHTTCEEEEECCCCTTCC
T ss_pred hcCCcEeecccccccc-ccHHHHHhhcCcceeeeeecccccc
Confidence 58999999 6777532 455677889999975 576656654
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.53 E-value=3.7 Score=33.58 Aligned_cols=95 Identities=16% Similarity=0.139 Sum_probs=62.1
Q ss_pred HHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCC
Q 026125 107 HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGM 185 (243)
Q Consensus 107 iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~-~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGA 185 (243)
..-++|+|-++++.+.|= .-.+|.+|=..-.+.+++.++ +..+++... ..|.+++++.|.... +.||
T Consensus 36 ~li~~Gv~Gi~v~G~tGE-------~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~----~~s~~~~i~~a~~a~-~~Ga 103 (296)
T d1xxxa1 36 HLVDQGCDGLVVSGTTGE-------SPTTTDGEKIELLRAVLEAVGDRARVIAGAG----TYDTAHSIRLAKACA-AEGA 103 (296)
T ss_dssp HHHHTTCSEEEESSTTTT-------TTTSCHHHHHHHHHHHHHHHTTTSEEEEECC----CSCHHHHHHHHHHHH-HHTC
T ss_pred HHHHcCCCEEEECeeccc-------hhhCCHHHHHHHHHHHHHHhccccceEeccc----cchhHHHHHHHHHHH-HhcC
Confidence 345679999988766542 235799997777777666554 344565543 347899999986554 7999
Q ss_pred CEEEeCCC------CCchHHHHHHHHHc-CCceee
Q 026125 186 DAIKLEGG------SPSRITAARGIVEA-GIAVMG 213 (243)
Q Consensus 186 daVKLEGg------~~~~~~~i~~L~~~-GIPV~G 213 (243)
|++.+--- .+......+.+.++ .+||+=
T Consensus 104 d~v~i~~P~~~~~~~~~l~~~~~~v~~~~~~pi~l 138 (296)
T d1xxxa1 104 HGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLL 138 (296)
T ss_dssp SEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEE
T ss_pred CeEEEEeccCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99987433 12233445666665 577763
|
| >d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Lac-repressor (lacR) core (C-terminal domain) species: Escherichia coli [TaxId: 562]
Probab=81.08 E-value=2.2 Score=33.64 Aligned_cols=80 Identities=6% Similarity=-0.021 Sum_probs=52.5
Q ss_pred CCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCCCchHHHHHHHHHcCC
Q 026125 130 DTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGI 209 (243)
Q Consensus 130 ~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfgsY~~s~e~Av~nA~Rl~keaGAdaVKLEGg~~~~~~~i~~L~~~GI 209 (243)
+|....-+.+++.-.++-.+...--+++.+... .++++-.+..-+|+ +-++|||-+-+.........+.+.+.||
T Consensus 8 ~~l~~~~~~~i~~~i~~~a~~~Gy~v~v~~~~~----~~~~~~~~~l~~l~-~~~vdgiIl~~~~~~~~~~~~~~~~~~i 82 (271)
T d1jyea_ 8 SSLALHAPSQIVAAILSRADQLGASVVVSMVER----SGVEACKTAVHNLL-AQRVSGLIINYPLDDQDAIAVEAACTNV 82 (271)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCS----SSHHHHHHHHHHHH-TTTCSCEEEESCCCHHHHHHHHHHTTTS
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCEEEEEECCC----CCHHHHHHHHHHHH-hcCCCEEEeccccCchhHHHHHHHhcCC
Confidence 455556677788777777777777777777533 23333333333445 5689999886544434455677999999
Q ss_pred ceeec
Q 026125 210 AVMGH 214 (243)
Q Consensus 210 PV~GH 214 (243)
||+..
T Consensus 83 PvV~~ 87 (271)
T d1jyea_ 83 PALFL 87 (271)
T ss_dssp CEEES
T ss_pred Ceeee
Confidence 99876
|
| >d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: Transcarboxylase 5S subunit, N-terminal domain species: Propionibacterium freudenreichii shermanii [TaxId: 1752]
Probab=80.02 E-value=0.91 Score=37.12 Aligned_cols=90 Identities=18% Similarity=0.178 Sum_probs=57.1
Q ss_pred HHHHHHHcCCCEEEeCcchhhhhccCCCCccCCHHHHHHHHHHHHcccCCCcEEeeCCCC-CCcCCHHHHHHHHHHHHHH
Q 026125 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG-TYESSTNQAVDTAVRILKE 182 (243)
Q Consensus 104 sA~iae~AGiDiILVGDSlgmv~lG~~dT~~vTldeMi~h~~aV~Rga~~~fvVaDmPfg-sY~~s~e~Av~nA~Rl~ke 182 (243)
.+..+.++|+|.|.+.|++|+. +-+++-...+.+++..+. |.|++ -.+.+..-|+.|+...+ +
T Consensus 166 ~~~~~~~~G~~~i~l~DT~G~~----------~P~~v~~li~~l~~~~~~-----~i~i~~H~Hnd~Gla~AN~laA~-~ 229 (303)
T d1rqba2 166 LAGQLLDMGADSIALKDMAALL----------KPQPAYDIIKAIKDTYGQ-----KTQINLHCHSTTGVTEVSLMKAI-E 229 (303)
T ss_dssp HHHHHHHTTCSEEEEEETTCCC----------CHHHHHHHHHHHHHHHCT-----TCCEEEEEBCTTSCHHHHHHHHH-H
T ss_pred HHHHHHhcCCcEEeecCccchh----------hhHHHHHHHHHHHhhcCC-----cccceeccCchHHHHHHHHHHHH-H
Confidence 3566778999999999999773 445566666777665421 22321 12366677899999999 5
Q ss_pred hCCCEEEeCC-------CCCchHHHHHHHHHcCC
Q 026125 183 GGMDAIKLEG-------GSPSRITAARGIVEAGI 209 (243)
Q Consensus 183 aGAdaVKLEG-------g~~~~~~~i~~L~~~GI 209 (243)
+||+.|-.-= |---.++++..|.+.|+
T Consensus 230 aG~~~id~ti~GlG~~~GN~~te~lv~~L~~~g~ 263 (303)
T d1rqba2 230 AGVDVVDTAISSMSLGPGHNPTESVAEMLEGTGY 263 (303)
T ss_dssp TTCSEEEEBCGGGCSTTSBCBHHHHHHHTTTSSE
T ss_pred cCCCEEEECCccCCCCCCCccHHHHHHHHHhcCC
Confidence 8999875431 11124455666655554
|