Citrus Sinensis ID: 026127
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 243 | 2.2.26 [Sep-21-2011] | |||||||
| Q3MIE0 | 300 | Enoyl-CoA hydratase domai | yes | no | 0.773 | 0.626 | 0.323 | 2e-11 | |
| Q9D7J9 | 300 | Enoyl-CoA hydratase domai | yes | no | 0.761 | 0.616 | 0.304 | 2e-09 | |
| A9MR28 | 261 | Carnitinyl-CoA dehydratas | N/A | no | 0.588 | 0.547 | 0.318 | 3e-09 | |
| A8ALR7 | 261 | Carnitinyl-CoA dehydratas | yes | no | 0.588 | 0.547 | 0.312 | 6e-09 | |
| P59395 | 261 | Carnitinyl-CoA dehydratas | yes | no | 0.588 | 0.547 | 0.306 | 1e-08 | |
| Q8Z9L5 | 261 | Carnitinyl-CoA dehydratas | N/A | no | 0.588 | 0.547 | 0.306 | 1e-08 | |
| Q8ZRX5 | 261 | Carnitinyl-CoA dehydratas | yes | no | 0.588 | 0.547 | 0.306 | 2e-08 | |
| B4TWR3 | 261 | Carnitinyl-CoA dehydratas | yes | no | 0.588 | 0.547 | 0.306 | 2e-08 | |
| B4TIG9 | 261 | Carnitinyl-CoA dehydratas | yes | no | 0.588 | 0.547 | 0.306 | 2e-08 | |
| B4T6J5 | 261 | Carnitinyl-CoA dehydratas | yes | no | 0.588 | 0.547 | 0.306 | 2e-08 |
| >sp|Q3MIE0|ECHD3_RAT Enoyl-CoA hydratase domain-containing protein 3, mitochondrial OS=Rattus norvegicus GN=Echdc3 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 96/210 (45%), Gaps = 22/210 (10%)
Query: 42 KAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMM---D 98
+AE+ +I ++ G FS+G DL TGA+ R Y E F+ MM +
Sbjct: 85 EAESEDLKVIIISAEGPVFSSGHDLK------ELTGAQGR-DYHTEVFQTCSEVMMLIRN 137
Query: 99 LPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVG 158
P+P VA VNG A AAG L S D + DK V++GL F + +G
Sbjct: 138 HPVPIVAMVNGLATAAGCQLVASCDIAVA-SDKSSFATPGVNVGL-----FCSTPAVALG 191
Query: 159 SATARR---DVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLA--GRKWAGE 213
A R+ ++L + I +EALR GL+ EEQ+ E + R+AK++A R
Sbjct: 192 RAVPRKVALEMLFTGEPISAQEALRHGLISKVVP-EEQLEEEATRIAKKIASLSRSVVAL 250
Query: 214 VYAEIRKSLCPDLCGVLGLDMRAVVSNSKL 243
A K L DL L +A+V N L
Sbjct: 251 GKATFYKQLPQDLSTAYFLASQAMVDNLTL 280
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q9D7J9|ECHD3_MOUSE Enoyl-CoA hydratase domain-containing protein 3, mitochondrial OS=Mus musculus GN=Echdc3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 92/207 (44%), Gaps = 22/207 (10%)
Query: 42 KAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMM---D 98
+AE+ +I ++ G FS+G DL A R Y E F+ MM +
Sbjct: 85 EAESEDLKVIIISAEGPVFSSGHDLKELTDAQGR-------DYHAEVFQTCSEVMMLIRN 137
Query: 99 LPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVG 158
P+P +A VNG A AAG L S D + DK V++GL F + +G
Sbjct: 138 HPVPILAMVNGLATAAGCQLVASCDIAVA-SDKSSFATPGVNVGL-----FCSTPAVALG 191
Query: 159 SATARR---DVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLA--GRKWAGE 213
A R+ ++L + I +EALR GL+ EEQ+ +MR+AK+++ R
Sbjct: 192 RAVPRKVALEMLFTGEPISAQEALRHGLISKVV-PEEQLEAETMRIAKKISSLSRSVVAL 250
Query: 214 VYAEIRKSLCPDLCGVLGLDMRAVVSN 240
A K L DL L +A+V N
Sbjct: 251 GKATFYKQLPQDLRTAYFLASQAMVDN 277
|
Mus musculus (taxid: 10090) |
| >sp|A9MR28|CAID_SALAR Carnitinyl-CoA dehydratase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=caiD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV----VAAMMDLPMPTVA 105
A+IT + KFFS G+DL A A G A F P + + DL P +A
Sbjct: 50 AIITGAGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTELFDLNKPVIA 99
Query: 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165
AVNG+A G LAL+ D++I D + E +G+ +PD L K+ D
Sbjct: 100 AVNGYAFGGGFELALAADFIIC-ADHASFALPEAKLGI-VPDSGGVLRLPKILPPAIVND 157
Query: 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+++ +++ EEALR G+V S ++ +++ LA+QL
Sbjct: 158 MVMTGRRMTAEEALRWGVVNRVV-SPHELLDSARELARQL 196
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Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA. Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) (taxid: 41514) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|A8ALR7|CAID_CITK8 Carnitinyl-CoA dehydratase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=caiD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G+DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165
AVNG+A G LAL+ D+++ D + E +G+ +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVC-ADNASFALPEAKLGI-VPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+L+ +++ EEALR G+V S++ + +++ LA+QL
Sbjct: 158 MLMTGRRMDAEEALRWGIVNRVV-SQQALMDSARELAQQL 196
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Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA. Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) (taxid: 290338) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|P59395|CAID_SHIFL Carnitinyl-CoA dehydratase OS=Shigella flexneri GN=caiD PE=3 SV=2 | Back alignment and function description |
|---|
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV----VAAMMDLPMPTVA 105
A+IT + KFFS G+DL A A G A F P + + +L P +A
Sbjct: 50 AIITGAGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFNLDKPVIA 99
Query: 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165
AVNG+A G LAL+ D+++ D + E +G+ +PD L K+ T +
Sbjct: 100 AVNGYAFGGGFELALAADFIVC-ADNASFALPEAKLGI-VPDSGGVLRLPKILPPTIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+++ +++ EEALR G+V S+ ++ + + LA+QL
Sbjct: 158 MVMTGRRMGAEEALRWGIVNRVV-SQAELMDNARELAQQL 196
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Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA. Shigella flexneri (taxid: 623) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q8Z9L5|CAID_SALTI Carnitinyl-CoA dehydratase OS=Salmonella typhi GN=caiD PE=3 SV=3 | Back alignment and function description |
|---|
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G+DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165
AVNG+A G LAL+ D+++ + + E +G+ +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLGI-VPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+++ +++ EEALR G+V S+ ++ E++ LA+QL
Sbjct: 158 MVMTGRRMSAEEALRWGIVNRVV-SQSELMESARELAQQL 196
|
Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA. Salmonella typhi (taxid: 90370) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q8ZRX5|CAID_SALTY Carnitinyl-CoA dehydratase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=caiD PE=3 SV=3 | Back alignment and function description |
|---|
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G+DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165
AVNG+A G LAL+ D+++ + + E +G+ +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLGI-VPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+++ +++ EEALR G+V S+ ++ E++ LA+QL
Sbjct: 158 MVMTGRRMSAEEALRWGVVNRVV-SQSELMESARELAQQL 196
|
Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA. Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|B4TWR3|CAID_SALSV Carnitinyl-CoA dehydratase OS=Salmonella schwarzengrund (strain CVM19633) GN=caiD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G+DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165
AVNG+A G LAL+ D+++ + + E +G+ +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLGI-VPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+++ +++ EEALR G+V S+ ++ E++ LA+QL
Sbjct: 158 MVMTGRRMSAEEALRWGVVNRVV-SQSELMESARELAQQL 196
|
Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA. Salmonella schwarzengrund (strain CVM19633) (taxid: 439843) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|B4TIG9|CAID_SALHS Carnitinyl-CoA dehydratase OS=Salmonella heidelberg (strain SL476) GN=caiD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G+DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165
AVNG+A G LAL+ D+++ + + E +G+ +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLGI-VPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+++ +++ EEALR G+V S+ ++ E++ LA+QL
Sbjct: 158 MVMTGRRMSAEEALRWGVVNRVV-SQSELMESARELAQQL 196
|
Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA. Salmonella heidelberg (strain SL476) (taxid: 454169) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|B4T6J5|CAID_SALNS Carnitinyl-CoA dehydratase OS=Salmonella newport (strain SL254) GN=caiD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV----VAAMMDLPMPTVA 105
A+IT KFFS G+DL A A G A F P + + DL P +A
Sbjct: 50 AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99
Query: 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165
AVNG+A G LAL+ D+++ + + E +G+ +PD L K+ +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLGI-VPDSGGVLRLPKLLPPAIVNE 157
Query: 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+++ +++ EEALR G+V S+ ++ E++ LA+QL
Sbjct: 158 MVMTGRRMSAEEALRWGVVNRVV-SQSELMESARELAQQL 196
|
Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA. Salmonella newport (strain SL254) (taxid: 423368) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 243 | ||||||
| 297800796 | 240 | enoyl-CoA hydratase/isomerase family pro | 0.983 | 0.995 | 0.680 | 3e-86 | |
| 224111012 | 238 | predicted protein [Populus trichocarpa] | 0.946 | 0.966 | 0.713 | 7e-84 | |
| 15236498 | 240 | indole-3-butyric acid response 10 [Arabi | 0.983 | 0.995 | 0.680 | 1e-82 | |
| 15236499 | 238 | 3-hydroxyacyl-CoA dehydratase 1 [Arabido | 0.971 | 0.991 | 0.628 | 2e-82 | |
| 297800794 | 238 | enoyl-CoA hydratase/isomerase family pro | 0.934 | 0.953 | 0.652 | 9e-82 | |
| 21555734 | 240 | carnitine racemase like protein [Arabido | 0.983 | 0.995 | 0.676 | 1e-81 | |
| 225432999 | 238 | PREDICTED: carnitinyl-CoA dehydratase-li | 0.967 | 0.987 | 0.623 | 3e-81 | |
| 225433001 | 238 | PREDICTED: carnitinyl-CoA dehydratase-li | 0.967 | 0.987 | 0.631 | 5e-81 | |
| 147858838 | 238 | hypothetical protein VITISV_036844 [Viti | 0.967 | 0.987 | 0.619 | 4e-80 | |
| 449432584 | 239 | PREDICTED: fatty acid oxidation complex | 0.983 | 1.0 | 0.613 | 4e-77 |
| >gi|297800796|ref|XP_002868282.1| enoyl-CoA hydratase/isomerase family protein [Arabidopsis lyrata subsp. lyrata] gi|297314118|gb|EFH44541.1| enoyl-CoA hydratase/isomerase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 323 bits (828), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 166/244 (68%), Positives = 207/244 (84%), Gaps = 5/244 (2%)
Query: 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
MCTLEK GD+F+LTLTG EHRF P I +ILS + +AK+++T GS LITT++GKFF
Sbjct: 1 MCTLEKRGDLFLLTLTGDG---EHRFHPDTIATILSLLEQAKSQSTRGSILITTANGKFF 57
Query: 61 SNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLAL 120
SNGFDLAWAQ AGS+TGA RLH MVESF+PVVAA++DLPMPT+AA+NGHAAAAGL LA+
Sbjct: 58 SNGFDLAWAQTAGSKTGAANRLHQMVESFKPVVAALLDLPMPTIAALNGHAAAAGLMLAI 117
Query: 121 SHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALR 180
SHDYV MR+D+GVLYMSEVDIGL++PDYF+AL RAK+G++ ARR++LL KKI+GEEA+
Sbjct: 118 SHDYVFMRKDRGVLYMSEVDIGLSMPDYFSALVRAKIGTSAARRELLLSGKKIRGEEAVG 177
Query: 181 MGLVE-AAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLGLDMRAVVS 239
+G+V+ AAYDSEE V EAS+RL ++LA +KW+GEVYA IRKSL P+LCG+LGL+ R V +
Sbjct: 178 LGIVDSAAYDSEEGVVEASVRLGEKLAAKKWSGEVYASIRKSLYPELCGILGLEAR-VFA 236
Query: 240 NSKL 243
KL
Sbjct: 237 TPKL 240
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224111012|ref|XP_002315715.1| predicted protein [Populus trichocarpa] gi|222864755|gb|EEF01886.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 315 bits (808), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 167/234 (71%), Positives = 198/234 (84%), Gaps = 4/234 (1%)
Query: 1 MCTLEKHG-DVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKF 59
MCTLEK G ++F+LTLTG+ DEHR P IDSILSA+ +AK++AT GS LITTS GKF
Sbjct: 1 MCTLEKTGTNIFILTLTGA---DEHRLNPTLIDSILSALRQAKSQATKGSVLITTSRGKF 57
Query: 60 FSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLA 119
FSNGFDLAWAQAA S+ A ERLH+MVE +PVVA ++ LPMPT+AAVNGHAAAAGL LA
Sbjct: 58 FSNGFDLAWAQAASSKPKATERLHHMVELLKPVVAELISLPMPTIAAVNGHAAAAGLILA 117
Query: 120 LSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEAL 179
LSHDY+ M+RD+GVLYMSEVDIGLT PDYF ALFRAKVGS + RDVLLR K+KG+EA+
Sbjct: 118 LSHDYIHMKRDRGVLYMSEVDIGLTFPDYFTALFRAKVGSPSVLRDVLLRGAKVKGDEAV 177
Query: 180 RMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLGLD 233
R G+VEAA+D+EE+++EA+MRL +QLA RKW GE+Y EIRKSL P+LCGVLGLD
Sbjct: 178 RRGIVEAAHDNEERLSEATMRLGEQLASRKWLGEIYKEIRKSLYPELCGVLGLD 231
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15236498|ref|NP_193179.1| indole-3-butyric acid response 10 [Arabidopsis thaliana] gi|14190481|gb|AAK55721.1|AF380640_1 AT4g14430/dl3255c [Arabidopsis thaliana] gi|2244799|emb|CAB10222.1| carnitine racemase like protein [Arabidopsis thaliana] gi|7268149|emb|CAB78485.1| carnitine racemase like protein [Arabidopsis thaliana] gi|15810107|gb|AAL06979.1| AT4g14430/dl3255c [Arabidopsis thaliana] gi|110738734|dbj|BAF01291.1| carnitine racemase like protein [Arabidopsis thaliana] gi|332658044|gb|AEE83444.1| indole-3-butyric acid response 10 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 166/244 (68%), Positives = 206/244 (84%), Gaps = 5/244 (2%)
Query: 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
MCTLEK GD+F+LTLTG EHRF P I +ILS + +AK+++T GS LITT++GKFF
Sbjct: 1 MCTLEKRGDLFLLTLTGDG---EHRFHPDTIATILSLLEQAKSQSTRGSILITTANGKFF 57
Query: 61 SNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLAL 120
SNGFDLAWAQ AGS+TGA RLH MVESF+PVVAA++DLPMPT+AA+NGHAAAAGL LAL
Sbjct: 58 SNGFDLAWAQTAGSKTGAANRLHQMVESFKPVVAALLDLPMPTIAALNGHAAAAGLILAL 117
Query: 121 SHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALR 180
SHDYV MR+D+GVLYMSEVDIGL++PDYF+AL RAK+G++ ARR++LL KKI+GEEA+
Sbjct: 118 SHDYVFMRKDRGVLYMSEVDIGLSMPDYFSALVRAKIGTSAARRELLLSGKKIRGEEAVG 177
Query: 181 MGLVE-AAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLGLDMRAVVS 239
+G+V+ AAYDSEE V AS+RL ++LA +KW+GEVYA IRKSL P+LCG+LGL+ R V +
Sbjct: 178 LGIVDSAAYDSEEGVVVASVRLGEKLAAKKWSGEVYASIRKSLYPELCGILGLETR-VFA 236
Query: 240 NSKL 243
KL
Sbjct: 237 TPKL 240
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15236499|ref|NP_193180.1| 3-hydroxyacyl-CoA dehydratase 1 [Arabidopsis thaliana] gi|2244800|emb|CAB10223.1| carnitine racemase like protein [Arabidopsis thaliana] gi|7268150|emb|CAB78486.1| carnitine racemase like protein [Arabidopsis thaliana] gi|18252927|gb|AAL62390.1| carnitine racemase like protein [Arabidopsis thaliana] gi|30023700|gb|AAP13383.1| At4g14440 [Arabidopsis thaliana] gi|332658045|gb|AEE83445.1| 3-hydroxyacyl-CoA dehydratase 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 152/242 (62%), Positives = 194/242 (80%), Gaps = 6/242 (2%)
Query: 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
MCTLEK GD+F+LTLTG DEHRF P I S+LS + +AK+++T GS LITT HGKFF
Sbjct: 1 MCTLEKRGDLFLLTLTGE---DEHRFHPDTIASVLSLLEQAKSQSTKGSVLITTGHGKFF 57
Query: 61 SNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLAL 120
SNGFDLAWAQ+AG GA +R+H MV+SF+PV+AA++DLPMPT+AA+NGHAAA+GL AL
Sbjct: 58 SNGFDLAWAQSAGH--GAIKRMHQMVKSFKPVLAALLDLPMPTIAALNGHAAASGLMFAL 115
Query: 121 SHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALR 180
SHDYV MR+D+GVLYMSEVDIGL +PDYF+AL AKVGS ARR++LL KK+KGEEA+
Sbjct: 116 SHDYVFMRKDRGVLYMSEVDIGLPVPDYFSALVVAKVGSGIARRELLLSGKKLKGEEAVA 175
Query: 181 MGLVE-AAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLGLDMRAVVS 239
+G+V+ AA+DS E V EA++ L + LA +KW GEVYA IRKSL P+LC ++ L + +
Sbjct: 176 LGIVDSAAHDSAEGVVEATVSLGESLAAKKWNGEVYATIRKSLYPELCRMVDLTANNLAT 235
Query: 240 NS 241
++
Sbjct: 236 HN 237
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297800794|ref|XP_002868281.1| enoyl-CoA hydratase/isomerase family protein [Arabidopsis lyrata subsp. lyrata] gi|297314117|gb|EFH44540.1| enoyl-CoA hydratase/isomerase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 308 bits (790), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 152/233 (65%), Positives = 188/233 (80%), Gaps = 6/233 (2%)
Query: 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
MCTLEK GD+F LTLTG DEHRF P I S+LS + +AK+++T GS LITT HG FF
Sbjct: 1 MCTLEKRGDLFHLTLTGD---DEHRFHPDTIASVLSLLEQAKSQSTKGSVLITTGHGNFF 57
Query: 61 SNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLAL 120
SNGFDLAWAQ+A R GA ER+H MV+SF+PV+AA++DLPMPT+AA+NGHAAA+GL AL
Sbjct: 58 SNGFDLAWAQSA--RHGAIERMHQMVKSFKPVLAALLDLPMPTIAALNGHAAASGLMFAL 115
Query: 121 SHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALR 180
SHDYV MR+D+GVLYMSEVDIGL +PDYF+AL AKVGS ARR++LL KK+KGE+A+
Sbjct: 116 SHDYVFMRKDRGVLYMSEVDIGLPVPDYFSALVVAKVGSGIARRELLLSGKKLKGEDAVA 175
Query: 181 MGLVE-AAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLGL 232
+G+V+ AA+DS E V EA++ L + LA +KW GEVYA IRKSL P+LC +L L
Sbjct: 176 LGIVDSAAHDSAEGVVEATVSLGESLAAKKWNGEVYASIRKSLYPELCRMLEL 228
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21555734|gb|AAM63923.1| carnitine racemase like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 165/244 (67%), Positives = 205/244 (84%), Gaps = 5/244 (2%)
Query: 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
MCTLEK GD+F+LTLTG EHRF P I +ILS + +AK+++T GS LITT++GKFF
Sbjct: 1 MCTLEKRGDLFLLTLTGDG---EHRFHPDTIATILSLLEQAKSQSTRGSILITTANGKFF 57
Query: 61 SNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLAL 120
SNGFDLAWAQ AGS+TGA RLH MVESF+PVVAA++DLPMPT+AA+NGHAAAAGL LAL
Sbjct: 58 SNGFDLAWAQTAGSKTGAANRLHQMVESFKPVVAALLDLPMPTIAALNGHAAAAGLILAL 117
Query: 121 SHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALR 180
SHDYV MR+D+GVLYMSEVDIGL++PDYF+AL RAK+G++ ARR++LL KKI+GEEA+
Sbjct: 118 SHDYVFMRKDRGVLYMSEVDIGLSMPDYFSALVRAKIGTSAARRELLLSGKKIRGEEAVG 177
Query: 181 MGLVE-AAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLGLDMRAVVS 239
+G+V+ AAYDSEE V AS+RL ++LA +KW+GEVYA IRKSL P+LC +LGL+ R V +
Sbjct: 178 LGIVDSAAYDSEEGVVVASVRLGEKLAAKKWSGEVYASIRKSLYPELCEILGLETR-VFA 236
Query: 240 NSKL 243
KL
Sbjct: 237 TPKL 240
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225432999|ref|XP_002284541.1| PREDICTED: carnitinyl-CoA dehydratase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 149/239 (62%), Positives = 200/239 (83%), Gaps = 4/239 (1%)
Query: 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
MCTLE+ G++F+L LTG +EHR GP +DSI SA+A+ K++ATPGSALITT+HGKFF
Sbjct: 1 MCTLEQRGNLFLLILTGD---NEHRLGPTLVDSIRSALAQVKSQATPGSALITTAHGKFF 57
Query: 61 SNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLAL 120
SNG DL WAQAAGS +G R+RL+++V +F+P++A ++ LPMPT+AAV+GHAAAAG LA+
Sbjct: 58 SNGLDLPWAQAAGS-SGFRDRLNHLVNNFKPIIADLLSLPMPTIAAVSGHAAAAGFMLAI 116
Query: 121 SHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALR 180
SHDYV+M+ D+ VLYMSE+DIGLT DYF A+ ++++ ARRDV+LRAKK+K EEA+R
Sbjct: 117 SHDYVLMKNDRSVLYMSELDIGLTFADYFMAMLKSRISDPAARRDVMLRAKKVKAEEAVR 176
Query: 181 MGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLGLDMRAVVS 239
MG+V++A+DS E EA++RLA+QL+GRKW GEVYAEIRK++ P++CG+LGL RAVV+
Sbjct: 177 MGIVDSAHDSAESTVEAAVRLAEQLSGRKWNGEVYAEIRKAMHPEVCGLLGLSHRAVVA 235
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225433001|ref|XP_002284547.1| PREDICTED: carnitinyl-CoA dehydratase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 306 bits (784), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 151/239 (63%), Positives = 198/239 (82%), Gaps = 4/239 (1%)
Query: 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
MCTLE+ G++F LTLTG +EHR GP DSI SA+A+ K++ATPGSALITT+ GKFF
Sbjct: 1 MCTLEQRGNLFFLTLTGD---NEHRLGPSLFDSIRSALAQVKSQATPGSALITTAQGKFF 57
Query: 61 SNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLAL 120
SNG DLAWAQAAGS + R+RL ++++ F+P+VA ++ LPMPT+AAV+GHAAAAG LA+
Sbjct: 58 SNGLDLAWAQAAGS-SSFRDRLSHLLDCFKPIVADLLSLPMPTIAAVSGHAAAAGFMLAI 116
Query: 121 SHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALR 180
SHDYV+M+ D+ VLYMSE+DIGLT PDYF A+ ++K+ ARRDV+LRAKK+K EEA+R
Sbjct: 117 SHDYVLMKNDRSVLYMSELDIGLTFPDYFMAMMKSKISDPAARRDVMLRAKKVKAEEAVR 176
Query: 181 MGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLGLDMRAVVS 239
MG+V++A+DS E EA++RLA+QL+GRKW GEVYAEIRK++ P++CG+LGL RAVV+
Sbjct: 177 MGIVDSAHDSAESTVEAAVRLAEQLSGRKWNGEVYAEIRKAMHPEVCGLLGLSHRAVVA 235
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147858838|emb|CAN82902.1| hypothetical protein VITISV_036844 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 148/239 (61%), Positives = 198/239 (82%), Gaps = 4/239 (1%)
Query: 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
MCTLE+ G++F+L LTG +EHR GP +DSI SA+A+ K++ATPGSALITT+H KFF
Sbjct: 1 MCTLEERGNLFLLILTGD---NEHRLGPTLVDSIRSALAQVKSQATPGSALITTAHDKFF 57
Query: 61 SNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLAL 120
SNG DL WAQAAGS +G R+RL+++V +F+P++A ++ LPMPT+AAV+GHAAAAG LA+
Sbjct: 58 SNGLDLPWAQAAGS-SGFRDRLNHLVNNFKPIIADLLSLPMPTIAAVSGHAAAAGFRLAI 116
Query: 121 SHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALR 180
SHDYV+M+ D+ VLYMSE+DIGLT DYF A+ ++K+ ARRDV+LRAKK+K EEA+R
Sbjct: 117 SHDYVLMKNDRSVLYMSELDIGLTFADYFMAMLKSKISDPAARRDVMLRAKKVKAEEAVR 176
Query: 181 MGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLGLDMRAVVS 239
MG+V++ +DS E EA++RLA+QL+GRKW GEVYAEIRK++ P++CG+LGL RAVV+
Sbjct: 177 MGIVDSTHDSAESTVEAAVRLAEQLSGRKWNGEVYAEIRKAMHPEVCGLLGLSHRAVVA 235
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432584|ref|XP_004134079.1| PREDICTED: fatty acid oxidation complex subunit alpha-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 149/243 (61%), Positives = 195/243 (80%), Gaps = 4/243 (1%)
Query: 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
MCT+EK G+ F+LTLTG D+HR P I+SIL A+++ KA+A+P S LITTSHGKFF
Sbjct: 1 MCTVEKRGNFFILTLTGD---DDHRLSPSLINSILKALSQVKAQASPASVLITTSHGKFF 57
Query: 61 SNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLAL 120
SNGFDL WA +AGS + AR RL++++E F+ VVA ++ LPMPT+AA+ GHAAAAG TLAL
Sbjct: 58 SNGFDLPWALSAGSVSAARHRLNHLIEIFKSVVAELISLPMPTIAAITGHAAAAGFTLAL 117
Query: 121 SHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALR 180
SHDY+IMR D+GVLYM E+D+GLTLPDYF ALF++K+GS+ A RD++LR K++GE A+R
Sbjct: 118 SHDYLIMRSDRGVLYMRELDLGLTLPDYFMALFKSKIGSSLAMRDLILRGMKVRGEAAVR 177
Query: 181 MGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLGLDMRAVVSN 240
MG+V++A+D E+ V A++RL +QLAGR W GEVYAEIRKSL P++ VLGL + +S
Sbjct: 178 MGIVDSAHDGEDSVVNAAVRLGEQLAGRNWDGEVYAEIRKSLYPEVSEVLGLPGKP-ISI 236
Query: 241 SKL 243
SKL
Sbjct: 237 SKL 239
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 243 | ||||||
| TAIR|locus:2129730 | 240 | IBR10 "indole-3-butyric acid r | 0.983 | 0.995 | 0.622 | 9e-77 | |
| TAIR|locus:2129740 | 238 | HCD1 "3-hydroxyacyl-CoA dehydr | 0.934 | 0.953 | 0.600 | 2.4e-69 | |
| TAIR|locus:2034178 | 240 | ECI1 ""delta(3), delta(2)-enoy | 0.876 | 0.887 | 0.421 | 5.9e-41 | |
| DICTYBASE|DDB_G0282341 | 249 | DDB_G0282341 "enoyl-CoA hydrat | 0.946 | 0.923 | 0.283 | 4.1e-17 | |
| ASPGD|ASPL0000001974 | 244 | AN6767 [Emericella nidulans (t | 0.823 | 0.819 | 0.290 | 6.2e-14 | |
| DICTYBASE|DDB_G0289147 | 267 | DDB_G0289147 "enoyl-CoA hydrat | 0.728 | 0.662 | 0.225 | 2.6e-08 | |
| RGD|1589147 | 300 | Echdc3 "enoyl Coenzyme A hydra | 0.786 | 0.636 | 0.289 | 9.1e-06 | |
| TIGR_CMR|CHY_2254 | 263 | CHY_2254 "enoyl-CoA hydratase/ | 0.633 | 0.585 | 0.235 | 0.00014 | |
| MGI|MGI:1915106 | 300 | Echdc3 "enoyl Coenzyme A hydra | 0.786 | 0.636 | 0.280 | 0.00025 | |
| TIGR_CMR|CBU_0976 | 256 | CBU_0976 "enoyl-CoA hydratase/ | 0.888 | 0.843 | 0.233 | 0.00089 |
| TAIR|locus:2129730 IBR10 "indole-3-butyric acid response 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
Identities = 152/244 (62%), Positives = 190/244 (77%)
Query: 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
MCTLEK GD+F+LTLTG EHRF P I +ILS + +AK+++T GS LITT++GKFF
Sbjct: 1 MCTLEKRGDLFLLTLTGDG---EHRFHPDTIATILSLLEQAKSQSTRGSILITTANGKFF 57
Query: 61 SNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTXXXXXXXXXXXXXXXXX 120
SNGFDLAWAQ AGS+TGA RLH MVESF+PVVAA++DLPMPT
Sbjct: 58 SNGFDLAWAQTAGSKTGAANRLHQMVESFKPVVAALLDLPMPTIAALNGHAAAAGLILAL 117
Query: 121 SHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALR 180
SHDYV MR+D+GVLYMSEVDIGL++PDYF+AL RAK+G++ ARR++LL KKI+GEEA+
Sbjct: 118 SHDYVFMRKDRGVLYMSEVDIGLSMPDYFSALVRAKIGTSAARRELLLSGKKIRGEEAVG 177
Query: 181 MGLVE-AAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLGLDMRAVVS 239
+G+V+ AAYDSEE V AS+RL ++LA +KW+GEVYA IRKSL P+LCG+LGL+ R V +
Sbjct: 178 LGIVDSAAYDSEEGVVVASVRLGEKLAAKKWSGEVYASIRKSLYPELCGILGLETR-VFA 236
Query: 240 NSKL 243
KL
Sbjct: 237 TPKL 240
|
|
| TAIR|locus:2129740 HCD1 "3-hydroxyacyl-CoA dehydratase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
Identities = 140/233 (60%), Positives = 175/233 (75%)
Query: 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
MCTLEK GD+F+LTLTG DEHRF P I S+LS + +AK+++T GS LITT HGKFF
Sbjct: 1 MCTLEKRGDLFLLTLTGE---DEHRFHPDTIASVLSLLEQAKSQSTKGSVLITTGHGKFF 57
Query: 61 SNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTXXXXXXXXXXXXXXXXX 120
SNGFDLAWAQ+AG GA +R+H MV+SF+PV+AA++DLPMPT
Sbjct: 58 SNGFDLAWAQSAGH--GAIKRMHQMVKSFKPVLAALLDLPMPTIAALNGHAAASGLMFAL 115
Query: 121 SHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALR 180
SHDYV MR+D+GVLYMSEVDIGL +PDYF+AL AKVGS ARR++LL KK+KGEEA+
Sbjct: 116 SHDYVFMRKDRGVLYMSEVDIGLPVPDYFSALVVAKVGSGIARRELLLSGKKLKGEEAVA 175
Query: 181 MGLVE-AAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLGL 232
+G+V+ AA+DS E V EA++ L + LA +KW GEVYA IRKSL P+LC ++ L
Sbjct: 176 LGIVDSAAHDSAEGVVEATVSLGESLAAKKWNGEVYATIRKSLYPELCRMVDL 228
|
|
| TAIR|locus:2034178 ECI1 ""delta(3), delta(2)-enoyl CoA isomerase 1"" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 94/223 (42%), Positives = 136/223 (60%)
Query: 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEAT-PGSALITTSHGKF 59
MC+LEK +F+L LTG EHR P +DS+ S I + +++ + S LITTS GKF
Sbjct: 1 MCSLEKRDRLFILKLTGDG---EHRLNPTLLDSLRSTINQIRSDPSFSQSVLITTSDGKF 57
Query: 60 FSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTXXXXXXXXXXXXXXXX 119
FSNG+DLA A++ S + M R +VA ++ LPMPT
Sbjct: 58 FSNGYDLALAESNPSLSVV------MDAKLRSLVADLISLPMPTIAAVTGHASAAGCILA 111
Query: 120 XSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEAL 179
SHDYV+MRRD+G LYMSE+DI L +P +F A+ R K+GS ARRDV+L A K+ + +
Sbjct: 112 MSHDYVLMRRDRGFLYMSELDIELIVPAWFMAVIRGKIGSPAARRDVMLTAAKVTADVGV 171
Query: 180 RMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSL 222
+MG+V++AY S + EA+++L +++ R G VY ++R+SL
Sbjct: 172 KMGIVDSAYGSAAETVEAAIKLGEEIVQRGGDGHVYGKMRESL 214
|
|
| DICTYBASE|DDB_G0282341 DDB_G0282341 "enoyl-CoA hydratase/isomerase family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 69/243 (28%), Positives = 114/243 (46%)
Query: 4 LEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSN 62
LE + D+F+LTL +D +E+RF + ++ ++ S LITTS KF+S
Sbjct: 17 LESNEDIFLLTL---ND-NENRFNDDNLGHFHKSLDYVES-CENASCLITTSISPKFYSL 71
Query: 63 GFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTXXXXXXXXXXXXXXXXXSH 122
G DL WA G++ V F ++ ++ P+PT +H
Sbjct: 72 GLDLDWALPRGAKN-----FQEFVFRFHALLQRILVFPIPTISCINGHSFAGGAMFSMAH 126
Query: 123 DYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMG 182
DY IM+ DKG + E+DI + L A+ + K+ ++ RDV+L K+ G+EA ++
Sbjct: 127 DYRIMKSDKGFFCLPEIDIHIPLTPGMNAILQCKITNSNIFRDVVLTGKRFGGKEAEKLQ 186
Query: 183 LVE-AAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCG-VLGLDMRAVVSN 240
LV+ + D E+ E + L + R G + E+ K+ +L +G R +
Sbjct: 187 LVDKSCTDILEKSVELAELLHTKGKDRITFGSLKEEMYKNASKELLEKTIGFASRLKLFE 246
Query: 241 SKL 243
SKL
Sbjct: 247 SKL 249
|
|
| ASPGD|ASPL0000001974 AN6767 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 66/227 (29%), Positives = 103/227 (45%)
Query: 3 TLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGS--ALITT-SHGKF 59
TL ++G+VF++T+ E+R ++ A + P S A+IT S KF
Sbjct: 11 TLSRYGNVFIITM---QKPPENRLNTWYCQELIRAFRTVEKILGPDSEGAVITRGSDAKF 67
Query: 60 FSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTXXXXXXXXXXXXXXXX 119
+ G +L + + A + F P+V ++D P PT
Sbjct: 68 WCTGLEL---DESDTNPFANS------DGFYPLVHTVLDFPFPTIALLTGHTFGGACPFA 118
Query: 120 XSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEAL 179
+HDY IM +G M V++GL D +L R K+ A + +LL A + GEEAL
Sbjct: 119 LAHDYRIMNSKRGFFSMPPVNLGLHF-DGIGSLPRLKLRPDIAAK-MLLEAHRWTGEEAL 176
Query: 180 RMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGE----VYAEIRKSL 222
R G+V A D +E + + ++ + GRKWA + VYA +R L
Sbjct: 177 RDGIVHAIADPDEML-DVALEM-----GRKWAPKAKMGVYAALRAEL 217
|
|
| DICTYBASE|DDB_G0289147 DDB_G0289147 "enoyl-CoA hydratase/isomerase family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 144 (55.7 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 42/186 (22%), Positives = 82/186 (44%)
Query: 22 DEHRFGPPAIDSILSAIAKAKAEATPGSALITTS--HGKFFSNGFDLAWAQAAGSRTGAR 79
+E+RF P + I A+ ++ LITT K++S G DL W + G +
Sbjct: 51 NENRFNPINLKYINQALDYIES-IEDCCCLITTGTDESKYYSLGLDLEWVKPRG-----K 104
Query: 80 ERLHYMVESFRPVVAAMMDLPMPTXXXXXXXXXXXXXXXXXSHDYVIMRRDKGVLYMSEV 139
++ ++ ++ +PT +HDY +M KG + ++ +
Sbjct: 105 SSFFNLLYDLCVLLERILTFSIPTISCINGHSYAGGAIFSLAHDYRVMNDSKGFICVNAI 164
Query: 140 DIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASM 199
D + LP + K+ + + RD +L K+ G +A ++ LV+ + + E S+
Sbjct: 165 DNNIPLPPGLIDTMKCKINNPSLYRDFVLMGKRYGGLDAEKLQLVDRT-SNPSTILEESI 223
Query: 200 RLAKQL 205
+LAK++
Sbjct: 224 KLAKEI 229
|
|
| RGD|1589147 Echdc3 "enoyl Coenzyme A hydratase domain containing 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 125 (49.1 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 60/207 (28%), Positives = 86/207 (41%)
Query: 42 KAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDL-- 99
+AE+ +I ++ G FS+G DL TGA+ R Y E F+ MM +
Sbjct: 85 EAESEDLKVIIISAEGPVFSSGHDLK------ELTGAQGR-DYHTEVFQTCSEVMMLIRN 137
Query: 100 -PMPTXXXXXXXXXXXXXXXXXSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVG 158
P+P S D + + DK V++GL AL RA V
Sbjct: 138 HPVPIVAMVNGLATAAGCQLVASCD-IAVASDKSSFATPGVNVGLFCSTPAVALGRA-VP 195
Query: 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAG--RKWAGEVYA 216
A ++L + I +EALR GL+ EEQ+ E + R+AK++A R A
Sbjct: 196 RKVAL-EMLFTGEPISAQEALRHGLISKVVP-EEQLEEEATRIAKKIASLSRSVVALGKA 253
Query: 217 EIRKSLCPDLCGVLGLDMRAVVSNSKL 243
K L DL L +A+V N L
Sbjct: 254 TFYKQLPQDLSTAYFLASQAMVDNLTL 280
|
|
| TIGR_CMR|CHY_2254 CHY_2254 "enoyl-CoA hydratase/isomerase family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 114 (45.2 bits), Expect = 0.00014, P = 0.00014
Identities = 37/157 (23%), Positives = 66/157 (42%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTXXXXXX 109
A++ T G F G D+ + ++T A +R+ M + ++++ P
Sbjct: 50 AVVLTGAGPGFCAGGDVKRMLSNFAKTPADQRVTLMENLVHNWLTLLINMEKPVISAVHG 109
Query: 110 XXXXXXXXXXXSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLR 169
+ D +I R + ++ +GL LPD F A+ ++++
Sbjct: 110 YAVGAGLSIALATDIIIAARST-IFSLAFAQVGL-LPDLSGLFFLARTLGVHRAKELIFT 167
Query: 170 AKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLA 206
A + E+A +GLV D + + EA M LAKQLA
Sbjct: 168 ADRFSAEKAYELGLVNRVVDDDLYLDEA-MNLAKQLA 203
|
|
| MGI|MGI:1915106 Echdc3 "enoyl Coenzyme A hydratase domain containing 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 113 (44.8 bits), Expect = 0.00025, P = 0.00025
Identities = 58/207 (28%), Positives = 85/207 (41%)
Query: 42 KAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDL-- 99
+AE+ +I ++ G FS+G DL T A+ R Y E F+ MM +
Sbjct: 85 EAESEDLKVIIISAEGPVFSSGHDLK------ELTDAQGR-DYHAEVFQTCSEVMMLIRN 137
Query: 100 -PMPTXXXXXXXXXXXXXXXXXSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVG 158
P+P S D + + DK V++GL AL RA V
Sbjct: 138 HPVPILAMVNGLATAAGCQLVASCD-IAVASDKSSFATPGVNVGLFCSTPAVALGRA-VP 195
Query: 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAG--RKWAGEVYA 216
A ++L + I +EALR GL+ EEQ+ +MR+AK+++ R A
Sbjct: 196 RKVAL-EMLFTGEPISAQEALRHGLISKVVP-EEQLEAETMRIAKKISSLSRSVVALGKA 253
Query: 217 EIRKSLCPDLCGVLGLDMRAVVSNSKL 243
K L DL L +A+V N L
Sbjct: 254 TFYKQLPQDLRTAYFLASQAMVDNLAL 280
|
|
| TIGR_CMR|CBU_0976 CBU_0976 "enoyl-CoA hydratase/isomerase family protein" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 107 (42.7 bits), Expect = 0.00089, P = 0.00089
Identities = 53/227 (23%), Positives = 86/227 (37%)
Query: 4 LEKHGDVFVLTLTGSSDVDEHR-FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSN 62
++K + V TLT + D+H F I + A+ +A E +I + G F
Sbjct: 7 IQKDTENSVCTLTLNRP-DKHNAFNEQVIFELKCALQQADKEEN-NRVIIIKAEGSNFCA 64
Query: 63 GFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTXXXXXXXXXXXXXXXXXSH 122
G DL W + T RE +F ++ + L PT
Sbjct: 65 GADLNWMKRMAEFT--REENEADALAFADLLQLLSRLSKPTIALIQGRVMGGGVGLVACC 122
Query: 123 DYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMG 182
D I +D + SEV +GL +P A +G ++ARR L A+ A ++G
Sbjct: 123 DIAIAVKDAQFCF-SEVKLGL-VPATIAPYIIRSIGYSSARR-YFLTAEVFNAVAAEKIG 179
Query: 183 LVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGV 229
L+ + + ++ A+ + G I K L DLC +
Sbjct: 180 LIHQVINEKTELLSTGHHFAELIIKN---GPHALSIAKQLLNDLCPI 223
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 243 | |||
| PLN02267 | 239 | PLN02267, PLN02267, enoyl-CoA hydratase/isomerase | 1e-135 | |
| cd06558 | 195 | cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme | 2e-39 | |
| COG1024 | 257 | COG1024, CaiD, Enoyl-CoA hydratase/carnithine race | 8e-28 | |
| pfam00378 | 245 | pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami | 8e-21 | |
| PRK08140 | 262 | PRK08140, PRK08140, enoyl-CoA hydratase; Provision | 2e-14 | |
| PRK06688 | 259 | PRK06688, PRK06688, enoyl-CoA hydratase; Provision | 3e-14 | |
| PRK06213 | 229 | PRK06213, PRK06213, enoyl-CoA hydratase; Provision | 7e-14 | |
| PRK05981 | 266 | PRK05981, PRK05981, enoyl-CoA hydratase; Provision | 2e-13 | |
| PRK06495 | 257 | PRK06495, PRK06495, enoyl-CoA hydratase; Provision | 3e-13 | |
| PRK07659 | 260 | PRK07659, PRK07659, enoyl-CoA hydratase; Provision | 5e-13 | |
| TIGR02280 | 256 | TIGR02280, PaaB1, phenylacetate degradation probab | 3e-11 | |
| PRK07327 | 268 | PRK07327, PRK07327, enoyl-CoA hydratase; Provision | 3e-11 | |
| PRK07511 | 260 | PRK07511, PRK07511, enoyl-CoA hydratase; Provision | 7e-11 | |
| PRK06142 | 272 | PRK06142, PRK06142, enoyl-CoA hydratase; Provision | 3e-10 | |
| PRK08272 | 302 | PRK08272, PRK08272, enoyl-CoA hydratase; Provision | 1e-09 | |
| PRK07110 | 249 | PRK07110, PRK07110, polyketide biosynthesis enoyl- | 2e-09 | |
| PRK09076 | 258 | PRK09076, PRK09076, enoyl-CoA hydratase; Provision | 3e-09 | |
| PRK07658 | 257 | PRK07658, PRK07658, enoyl-CoA hydratase; Provision | 1e-08 | |
| TIGR02437 | 714 | TIGR02437, FadB, fatty oxidation complex, alpha su | 2e-08 | |
| PRK05870 | 249 | PRK05870, PRK05870, enoyl-CoA hydratase; Provision | 3e-08 | |
| PRK06072 | 248 | PRK06072, PRK06072, enoyl-CoA hydratase; Provision | 3e-08 | |
| PRK09245 | 266 | PRK09245, PRK09245, enoyl-CoA hydratase; Provision | 4e-08 | |
| TIGR02440 | 699 | TIGR02440, FadJ, fatty oxidation complex, alpha su | 7e-08 | |
| PRK03580 | 261 | PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr | 1e-07 | |
| TIGR02441 | 737 | TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c | 1e-07 | |
| PRK07509 | 262 | PRK07509, PRK07509, enoyl-CoA hydratase; Provision | 1e-07 | |
| PRK07468 | 262 | PRK07468, PRK07468, enoyl-CoA hydratase; Provision | 2e-07 | |
| TIGR03189 | 251 | TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecar | 2e-07 | |
| TIGR03210 | 256 | TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hyd | 2e-07 | |
| PRK05674 | 265 | PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr | 3e-07 | |
| PLN03214 | 278 | PLN03214, PLN03214, probable enoyl-CoA hydratase/i | 9e-07 | |
| PRK07260 | 255 | PRK07260, PRK07260, enoyl-CoA hydratase; Provision | 9e-07 | |
| PRK05809 | 260 | PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata | 1e-06 | |
| TIGR01929 | 259 | TIGR01929, menB, naphthoate synthase (dihydroxynap | 1e-06 | |
| PRK06144 | 262 | PRK06144, PRK06144, enoyl-CoA hydratase; Provision | 2e-06 | |
| PRK08138 | 261 | PRK08138, PRK08138, enoyl-CoA hydratase; Provision | 2e-06 | |
| PRK11154 | 708 | PRK11154, fadJ, multifunctional fatty acid oxidati | 2e-06 | |
| PRK06210 | 272 | PRK06210, PRK06210, enoyl-CoA hydratase; Provision | 2e-06 | |
| PLN02664 | 275 | PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d | 3e-06 | |
| PRK07827 | 260 | PRK07827, PRK07827, enoyl-CoA hydratase; Provision | 4e-06 | |
| PLN02600 | 251 | PLN02600, PLN02600, enoyl-CoA hydratase | 6e-06 | |
| PRK07657 | 260 | PRK07657, PRK07657, enoyl-CoA hydratase; Provision | 6e-06 | |
| PRK05869 | 222 | PRK05869, PRK05869, enoyl-CoA hydratase; Validated | 8e-06 | |
| PRK11730 | 715 | PRK11730, fadB, multifunctional fatty acid oxidati | 1e-05 | |
| PRK08258 | 277 | PRK08258, PRK08258, enoyl-CoA hydratase; Provision | 1e-05 | |
| PRK06143 | 256 | PRK06143, PRK06143, enoyl-CoA hydratase; Provision | 2e-05 | |
| PRK06127 | 269 | PRK06127, PRK06127, enoyl-CoA hydratase; Provision | 2e-05 | |
| PRK07854 | 243 | PRK07854, PRK07854, enoyl-CoA hydratase; Provision | 3e-05 | |
| PRK05995 | 262 | PRK05995, PRK05995, enoyl-CoA hydratase; Provision | 3e-05 | |
| PRK05864 | 276 | PRK05864, PRK05864, enoyl-CoA hydratase; Provision | 3e-05 | |
| PRK06494 | 259 | PRK06494, PRK06494, enoyl-CoA hydratase; Provision | 3e-05 | |
| PRK08139 | 266 | PRK08139, PRK08139, enoyl-CoA hydratase; Validated | 6e-05 | |
| PLN02888 | 265 | PLN02888, PLN02888, enoyl-CoA hydratase | 8e-05 | |
| PRK08321 | 302 | PRK08321, PRK08321, naphthoate synthase; Validated | 1e-04 | |
| PRK09674 | 255 | PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; | 5e-04 | |
| COG0447 | 282 | COG0447, MenB, Dihydroxynaphthoic acid synthase [C | 0.001 | |
| PRK08260 | 296 | PRK08260, PRK08260, enoyl-CoA hydratase; Provision | 0.003 | |
| PRK06190 | 258 | PRK06190, PRK06190, enoyl-CoA hydratase; Provision | 0.004 |
| >gnl|CDD|215151 PLN02267, PLN02267, enoyl-CoA hydratase/isomerase family protein | Back alignment and domain information |
|---|
Score = 380 bits (979), Expect = e-135
Identities = 160/245 (65%), Positives = 191/245 (77%), Gaps = 8/245 (3%)
Query: 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
MCTLEK G++F+LTLTG EHR P IDSI SA+ + K++ATPGS LITT+ GKFF
Sbjct: 1 MCTLEKRGNLFILTLTGD---GEHRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFF 57
Query: 61 SNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLAL 120
SNGFDLAWAQAAGS A RLH MV RP+VA ++ LPMPT+AAV GHA+AAG LAL
Sbjct: 58 SNGFDLAWAQAAGS---APSRLHLMVAKLRPLVADLISLPMPTIAAVTGHASAAGFILAL 114
Query: 121 SHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALR 180
SHDYV+MR+D+GVLYMSEVDIGL LPDYF AL RAK+GS ARRDVLLRA K+ EEA+
Sbjct: 115 SHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRDVLLRAAKLTAEEAVE 174
Query: 181 MGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLGLDMRAVVSN 240
MG+V++A+DS E+ EA++RL ++LA RKW GEVYA IRKSL P++CG LGLD S+
Sbjct: 175 MGIVDSAHDSAEETVEAAVRLGEELAARKWNGEVYASIRKSLLPEVCGKLGLDEEVEESH 234
Query: 241 --SKL 243
SKL
Sbjct: 235 TTSKL 239
|
Length = 239 |
| >gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 2e-39
Identities = 63/204 (30%), Positives = 96/204 (47%), Gaps = 9/204 (4%)
Query: 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFS 61
+E+ G V +TL + +D + +A+ +A+A+ ++ T GK F
Sbjct: 1 VLVERDGGVATITLNRPEKR--NALSLEMLDELAAALDEAEADPDVR-VVVLTGAGKAFC 57
Query: 62 NGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALS 121
G DL A + A E + + ++ A++ LP P +AAVNG A GL LAL+
Sbjct: 58 AGADLKELAAL---SDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALA 114
Query: 122 HDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRM 181
D I D + EV +GL VG A AR +LL ++I EEAL +
Sbjct: 115 CDIRIAAED-AKFGLPEVKLGLVPGGGGTQRLPRLVGPARARE-LLLTGRRISAEEALEL 172
Query: 182 GLVEAAYDSEEQVAEASMRLAKQL 205
GLV+ EE +A A + LA++L
Sbjct: 173 GLVDEVVPDEELLAAA-LELARRL 195
|
This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195 |
| >gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 8e-28
Identities = 59/207 (28%), Positives = 94/207 (45%), Gaps = 13/207 (6%)
Query: 3 TLEKHGDVFVLTLTGSSDVDEHR--FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
+E+ + V+TL + E +D + A+ +A+A+ ++ T GK F
Sbjct: 8 LVEREDGIAVITL----NRPEKLNALNLEMLDELAEALDEAEADPD-VRVVVLTGAGKAF 62
Query: 61 SNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLAL 120
S G DL + A + + R A+ DLP P +AAVNG+A GL LAL
Sbjct: 63 SAGADLKELLSPEDGNAAENLMQPGQDLLR----ALADLPKPVIAAVNGYALGGGLELAL 118
Query: 121 SHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALR 180
+ D I D + EV++GL D +G A+ +L + I EAL
Sbjct: 119 ACDIRIAAEDA-KFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLT-GEPISAAEALE 176
Query: 181 MGLVEAAYDSEEQVAEASMRLAKQLAG 207
+GLV+ E++ E ++ LA++LA
Sbjct: 177 LGLVDEVVPDAEELLERALELARRLAA 203
|
Length = 257 |
| >gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 8e-21
Identities = 51/176 (28%), Positives = 90/176 (51%), Gaps = 9/176 (5%)
Query: 31 IDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFR 90
+ ++ A+ K + + + A++ T FS G D+ + + A++ +
Sbjct: 27 LTELIQALEKLEQDPSVK-AIVLTGGPGAFSAGADI---KEMAAEPLAQQAQFS--LEAQ 80
Query: 91 PVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFA 150
+ + + DLP P +AAVNG+A GL LAL+ DY I D + EV +G+
Sbjct: 81 DLWSRLEDLPKPVIAAVNGYALGGGLELALACDYRIA-ADNAKFGLPEVKLGIIPGAGGT 139
Query: 151 ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLA 206
+G + A ++LL ++I+ +EAL+MGLV+ EEQ+ E ++ LA++LA
Sbjct: 140 QRLPRIIGVSAA-LEMLLTGRRIRAQEALKMGLVDKV-VPEEQLVEEAIELAQRLA 193
|
This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245 |
| >gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 2e-14
Identities = 61/170 (35%), Positives = 82/170 (48%), Gaps = 8/170 (4%)
Query: 39 AKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESF-RPVVAAMM 97
A + E AL+ T G+ F G DLA GA L +E+F P+V +
Sbjct: 39 ALDQVEDDGARALLLTGAGRGFCAGQDLADRDVTPG--GAMPDLGESIETFYNPLVRRLR 96
Query: 98 DLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAK- 156
LP+P +AAVNG AA AG LAL+ D V+ R + + V IGL +PD F +
Sbjct: 97 ALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFI-QAFVKIGL-VPDSGGTWFLPRL 154
Query: 157 VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLA 206
VG A A LL +K+ E+A + GL+ D EA +LA LA
Sbjct: 155 VGMARALGLALL-GEKLSAEQAEQWGLIWRVVDDAALADEA-QQLAAHLA 202
|
Length = 262 |
| >gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 3e-14
Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 13/159 (8%)
Query: 50 ALITTSHGKFFSNGFDL-AWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVN 108
++ T G+ FS G D+ + +A ++ + A+ LP P VAAVN
Sbjct: 52 VVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVN-------RFLRAIAALPKPVVAAVN 104
Query: 109 GHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAK-VGSATARRDVL 167
G A G++LAL+ D V + + +GL PD + + +G A A +L
Sbjct: 105 GPAVGVGVSLALACDLVYA-SESAKFSLPFAKLGL-CPDAGGSALLPRLIGRARAAE-ML 161
Query: 168 LRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLA 206
L + + EEALR+GLV + E AEA A +LA
Sbjct: 162 LLGEPLSAEEALRIGLVNRVVPAAELDAEAD-AQAAKLA 199
|
Length = 259 |
| >gnl|CDD|235744 PRK06213, PRK06213, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 7e-14
Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 11/182 (6%)
Query: 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYM 85
P ID++ +A+ +A+ + + ++ T FS GFDL + GA+ + +
Sbjct: 26 LSPAMIDALNAALDQAEDDR---AVVVITGQPGIFSGGFDLKVMTS-----GAQAAIA-L 76
Query: 86 VESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTL 145
+ + + ++ P P + A GHA A G L LS DY I + ++EV IG+T+
Sbjct: 77 LTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTM 136
Query: 146 PDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
P L R ++ + +R V+ A+ EEA+ G ++ EQ+ + A++L
Sbjct: 137 PHAAIELARDRLTPSAFQRAVIN-AEMFDPEEAVAAGFLDEVVPP-EQLLARAQAAAREL 194
Query: 206 AG 207
AG
Sbjct: 195 AG 196
|
Length = 229 |
| >gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-13
Identities = 68/212 (32%), Positives = 98/212 (46%), Gaps = 20/212 (9%)
Query: 3 TLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSI------LSAIAKAKAEATPGSALITTSH 56
TL+ G V +LTL +ID + L AI KAE L+ T
Sbjct: 7 TLDFDGGVAILTLD-----HPEVMNAVSIDMLGGLAEALDAIEDGKAEV---RCLVLTGA 58
Query: 57 GKFFSNGFDLAWAQAAGSRTGARERLHYMVES-FRPVVAAMMDLPMPTVAAVNGHAAAAG 115
G+ F G +L + G + + +E+ + P + + +LP P V AVNG AA G
Sbjct: 59 GRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVG 118
Query: 116 LTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAK-VGSATARRDVLLRAKKIK 174
++ AL D ++ R L + IGL +PD + + VG A A LL +K+
Sbjct: 119 MSFALMGDLILCARSAYFL-QAFRRIGL-VPDGGSTWLLPRLVGKARAMELSLL-GEKLP 175
Query: 175 GEEALRMGLVEAAYDSEEQVAEASMRLAKQLA 206
E AL+ GLV D E +AEA M+LA +LA
Sbjct: 176 AETALQWGLVNRVVDDAELMAEA-MKLAHELA 206
|
Length = 266 |
| >gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 3e-13
Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 9/157 (5%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNG 109
++ T GK F G DL G + R A+ + P +AAVNG
Sbjct: 50 VVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRT---RECFHAIRECAKPVIAAVNG 106
Query: 110 HAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLR 169
A AGL L S D +I+ + V + E+D+GL A G + RR ++L
Sbjct: 107 PALGAGLGLVASCD-IIVASENAVFGLPEIDVGLAGGGKHAMRL---FGHSLTRR-MMLT 161
Query: 170 AKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLA 206
++ E R G++EA EE + EA M +A+++A
Sbjct: 162 GYRVPAAELYRRGVIEACLPPEELMPEA-MEIAREIA 197
|
Length = 257 |
| >gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 5e-13
Identities = 52/199 (26%), Positives = 93/199 (46%), Gaps = 14/199 (7%)
Query: 42 KAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPM 101
+ + ++ +G+ FS G D+ ++ + ++ + +V + +P
Sbjct: 44 EVAESSAHIVVLRGNGRGFSAGGDIKMMLSSNDE----SKFDGVMNTISEIVVTLYTMPK 99
Query: 102 PTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAK-VGSA 160
T++A++G AA GL++AL+ DYVI L M+ + IGL +PD F K VG
Sbjct: 100 LTISAIHGPAAGLGLSIALTADYVIADIS-AKLAMNFIGIGL-IPDGGGHFFLQKRVGEN 157
Query: 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSE--EQVAEA-SMRLAKQLAGRKWAGEVYAE 217
A++ ++ KK+ EAL +GL++ + + S L K L ++Y E
Sbjct: 158 KAKQ-IIWEGKKLSATEALDLGLIDEVIGGDFQTAAKQKISEWLQKPLKAMIETKQIYCE 216
Query: 218 IRKSLCPDLCGVLGLDMRA 236
+ +S L VL L+ RA
Sbjct: 217 LNRS---QLEQVLQLEKRA 232
|
Length = 260 |
| >gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 3e-11
Identities = 53/167 (31%), Positives = 73/167 (43%), Gaps = 9/167 (5%)
Query: 42 KAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESF-RPVVAAMMDLP 100
+ E AL+ T G+ F G DL+ G L +E+F P+V + LP
Sbjct: 37 RVERDDARALMLTGAGRGFCAGQDLS---ERNPTPGGAPDLGRTIETFYNPLVRRLRALP 93
Query: 101 MPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAK-VGS 159
+P V AVNG AA AG LAL+ D V+ + + IGL +PD + VG
Sbjct: 94 LPVVCAVNGVAAGAGANLALACDIVLAAESARFI-QAFAKIGL-IPDSGGTWSLPRLVGR 151
Query: 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLA 206
A A +L +K+ A GL+ D + EA LA LA
Sbjct: 152 ARAMGLAML-GEKLDARTAASWGLIWQVVDDAALMDEAQ-ALAVHLA 196
|
This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256 |
| >gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-11
Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 6/158 (3%)
Query: 49 SALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVN 108
++ GK FS G DLA + R R+ E+ R +V +++ P V+A++
Sbjct: 58 RVVLIRGEGKAFSAGGDLALVEEMADDFEVRARV--WREA-RDLVYNVINCDKPIVSAIH 114
Query: 109 GHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLL 168
G A AGL AL D I +D ++ +G+ D+ A ++ G A A+ +LL
Sbjct: 115 GPAVGAGLVAALLADISIAAKDARII-DGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLL 173
Query: 169 RAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLA 206
+ + GEEA R+GLV A D +E + +A + +A++LA
Sbjct: 174 -CEPVSGEEAERIGLVSLAVDDDELLPKA-LEVAERLA 209
|
Length = 268 |
| >gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 7e-11
Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 12/205 (5%)
Query: 6 KHGDVFVLTLTGSSDVDEHR--FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNG 63
+ G VLTL+ R P + + A+ A+ + + A++ T G FF G
Sbjct: 9 REGSTLVLTLSNP----GARNALHPDMYAAGIEALNTAERDPSIR-AVVLTGAGGFFCAG 63
Query: 64 FDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHD 123
+L + +R ++ + A+ P P +AAV G AA AG +LAL+ D
Sbjct: 64 GNLN--RLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACD 121
Query: 124 YVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGL 183
++ RD M+ V +GLT PD + F A+ ++LL K I E +G+
Sbjct: 122 LLVAARD-AKFVMAYVKVGLT-PDGGGSWFLARALPRQLATELLLEGKPISAERLHALGV 179
Query: 184 VEAAYDSEEQVAEASMRLAKQLAGR 208
V + + +AEA + LA QLA
Sbjct: 180 VNRLAEPGQALAEA-LALADQLAAG 203
|
Length = 260 |
| >gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 3e-10
Identities = 50/184 (27%), Positives = 74/184 (40%), Gaps = 33/184 (17%)
Query: 43 AEATPG-SALITTSHGKFFSNGFDLAW----AQAAGSRTGARER--LHYMVESFRPVVAA 95
+A P A++ + GK FS G DL G AR R L + + + A
Sbjct: 45 LDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINA 104
Query: 96 MMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMS--EVDIGLTLPDYFAALF 153
+ D P +AAV G G+ L + D MR S EVD+G+
Sbjct: 105 VADCRKPVIAAVQGWCIGGGVDLISACD---MRYASADAKFSVREVDLGMV--------- 152
Query: 154 RAKVGSATAR----------RDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAK 203
A VGS R R++ L + I EA ++GLV YD + + A+ A+
Sbjct: 153 -ADVGS-LQRLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAR 210
Query: 204 QLAG 207
++A
Sbjct: 211 EIAA 214
|
Length = 272 |
| >gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-09
Identities = 48/192 (25%), Positives = 77/192 (40%), Gaps = 27/192 (14%)
Query: 37 AIAKAKAEATPG-SALITTSHGKFFSNGFDL-AWAQAAGSRTGARERLHY---------- 84
A +A+ PG ++ + GK F G+DL A+A+ + S G
Sbjct: 43 RAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDD 102
Query: 85 ---------MVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLY 135
M+ F ++ PTVA V+G+ A G +AL D VI D + Y
Sbjct: 103 PWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGY 162
Query: 136 MSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVA 195
G+ ++ ++G A+R +L I G +A GL A EE +
Sbjct: 163 PPTRVWGVPA----TGMWAYRLGPQRAKR-LLFTGDCITGAQAAEWGLAVEAVPPEE-LD 216
Query: 196 EASMRLAKQLAG 207
E + RL +++A
Sbjct: 217 ERTERLVERIAA 228
|
Length = 302 |
| >gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-09
Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 16/188 (8%)
Query: 21 VDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80
V+++ F D + A + +I T + +F+ G G++ G
Sbjct: 24 VNKNAFSDELCDQLHEAFDTIAQDPRY-KVVILTGYPNYFATG---------GTQEGLLS 73
Query: 81 RL-HYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEV 139
+ + + ++ P+P +AA+ GHA GL L L D V++ R+ V + +
Sbjct: 74 LQTGKGTFTEANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRES-VYTANFM 132
Query: 140 DIGLTLPDYFA-ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEAS 198
G T P A A+ K+G A +++LL A+ +G E + G+ +V E +
Sbjct: 133 KYGFT-PGMGATAILPEKLGLALG-QEMLLTARYYRGAELKKRGVPFPVL-PRAEVLEKA 189
Query: 199 MRLAKQLA 206
+ LA+ LA
Sbjct: 190 LELARSLA 197
|
Length = 249 |
| >gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-09
Identities = 54/173 (31%), Positives = 78/173 (45%), Gaps = 37/173 (21%)
Query: 50 ALITTSHG-KFFSNGFDLAWAQAAGSRTGARERLHYMVESF------RPVVAAMMDLPMP 102
AL+ T G KFFS G DL A G + ARE E+F R V
Sbjct: 49 ALVITGDGEKFFSAGADLN-LFADGDKAVAREMARRFGEAFEALSAFRGV---------- 97
Query: 103 TVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGL--------TLPDYFAALFR 154
++AA+NG+A GL AL+ D I + + + E +GL LP
Sbjct: 98 SIAAINGYAMGGGLECALACDIRIAEE-QAQMALPEASVGLLPCAGGTQNLP-------- 148
Query: 155 AKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAG 207
VG A+R +L +++ ALR+GLVE + E EA++ LA+++A
Sbjct: 149 WLVGEGWAKRMILC-GERVDAATALRIGLVEEVVEKGEAR-EAALALAQKVAN 199
|
Length = 258 |
| >gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-08
Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 35/173 (20%)
Query: 50 ALITTSHGKFFSNGFD------LAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPT 103
++ G+FFS G D + A+ A + VE F P
Sbjct: 48 VVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKF----------SKPV 97
Query: 104 VAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLT--------LPDYFAALFRA 155
+AA++G A GL LA+S L + E+++GL LP Y
Sbjct: 98 IAAIHGAALGGGLELAMSCHIRFATESAK-LGLPELNLGLIPGFAGTQRLPRY------- 149
Query: 156 KVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
VG A A +++L ++ I G EAL+ GLV + EE + + + +LAK++AG+
Sbjct: 150 -VGKAKAL-EMMLTSEPITGAEALKWGLVNGVF-PEETLLDDAKKLAKKIAGK 199
|
Length = 257 |
| >gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-08
Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 98 DLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKV 157
DLP+PTVAA+NG A G L+ D+ I + + E +G+ +P + + +V
Sbjct: 100 DLPVPTVAAINGIALGGGCECVLATDFRIADDTAKI-GLPETKLGI-MPGFGGTVRLPRV 157
Query: 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
A + + K+ + E+AL++G V+A +++ A A L + G+
Sbjct: 158 IGADNALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGK 208
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714 |
| >gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-08
Identities = 59/172 (34%), Positives = 76/172 (44%), Gaps = 13/172 (7%)
Query: 30 AIDSILSA---IAKAKAEATPGS-ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYM 85
A+ + +SA A A AEA P AL+ T GK F G DL AA R A + L +
Sbjct: 26 AVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGR-PAEDGLRRI 84
Query: 86 VESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTL 145
+ F A+ P+PT+AAVNG A AGL LAL+ D I K + +GL
Sbjct: 85 YDGF----LAVASCPLPTIAAVNGAAVGAGLNLALAADVRIA-GPKALFDARFQKLGLH- 138
Query: 146 PDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEA 197
P A + R LL + E A+R GL D + VA A
Sbjct: 139 PGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLALMVAD--DPVAAA 188
|
Length = 249 |
| >gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-08
Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 12/169 (7%)
Query: 34 ILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVV 93
+S + + A+ ++T G+ F G DL+ A + + E+F P++
Sbjct: 32 FISKLKQINADPKIRVVIVTGE-GRAFCVGADLS--------EFAPDFAIDLRETFYPII 82
Query: 94 AAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALF 153
+ ++A+NG A A + +ALS D+ RD + + +GL D A F
Sbjct: 83 REIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFV-TAFQRLGLA-SDTGVAYF 140
Query: 154 RAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLA 202
K+ ++L+ + EEA R GL++ + D E + R++
Sbjct: 141 LLKLTGQRF-YEILVLGGEFTAEEAERWGLLKISEDPLSDAEEMANRIS 188
|
Length = 248 |
| >gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 4e-08
Identities = 59/220 (26%), Positives = 92/220 (41%), Gaps = 27/220 (12%)
Query: 5 EKHGDVFVLTLTGSSDVDEHR---FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFS 61
E+ G + LT+ + E R A+D++++A A A+ + A+I T G FS
Sbjct: 8 ERDGHIVTLTM----NRPETRNALSDNDAVDALVAACAAINADRSV-RAVILTGAGTAFS 62
Query: 62 NG---FDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTL 118
+G D+ A + A R Y + + A+ +L +P +AAVNG A AG L
Sbjct: 63 SGGNVKDMRARVGAFGGSPADIRQGYR-HGIQRIPLALYNLEVPVIAAVNGPAIGAGCDL 121
Query: 119 ALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEA 178
A D I + S V +GL D A L +G A A ++ I A
Sbjct: 122 ACMCDIRIA-SETARFAESFVKLGLIPGDGGAWLLPRIIGMARA-AEMAFTGDAIDAATA 179
Query: 179 LRMGLVEAAYDSEEQVAEA-------------SMRLAKQL 205
L GLV +++ + A ++RL K+L
Sbjct: 180 LEWGLVSRVVPADQLLPAARALAERIAANPPHALRLTKRL 219
|
Length = 266 |
| >gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 7e-08
Identities = 42/129 (32%), Positives = 69/129 (53%), Gaps = 12/129 (9%)
Query: 92 VVAAMMDLPMPTVAAVNGHAAAAGLTLALS-HDYVIMRRDKGVLYMSEVDIGLTLPDYFA 150
+ A + LP+P VAA++G GL LAL+ H V DK VL + EV +GL LP
Sbjct: 88 LFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGL-LPGSGG 146
Query: 151 A--LFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAA------YDSEEQVAEASMRLA 202
L R +G +TA D++L K+++ ++AL++GLV+ D+ ++A +
Sbjct: 147 TQRLPRL-IGVSTA-LDMILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKGKPIR 204
Query: 203 KQLAGRKWA 211
K L+ ++
Sbjct: 205 KPLSLQERL 213
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699 |
| >gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-07
Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 9/157 (5%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNG 109
A+IT + KFFS G+DL A A G A + F + + DL P +AAVNG
Sbjct: 50 AIITGAGEKFFSAGWDLK-AAAEGEAPDA----DFGPGGFAGL-TEIFDLDKPVIAAVNG 103
Query: 110 HAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLR 169
+A G LAL+ D+++ D + E +G +PD L K ++++
Sbjct: 104 YAFGGGFELALAADFIVC-ADNASFALPEAKLG-IVPDSGGVLRLPKRLPPAIANEMVMT 161
Query: 170 AKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLA 206
+++ EEALR G+V + ++ + + LA+QL
Sbjct: 162 GRRMDAEEALRWGIVNRVV-PQAELMDRARELAQQLV 197
|
Length = 261 |
| >gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-07
Identities = 53/218 (24%), Positives = 88/218 (40%), Gaps = 19/218 (8%)
Query: 5 EKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGF 64
E GDV V+ + S + + + + SA++ + F G
Sbjct: 18 EVKGDVAVVKID-SPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGA 76
Query: 65 DLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDY 124
D+ A + + E F + P VAA++G GL LAL+ Y
Sbjct: 77 DIQMIAACKTAQEVTQLSQEGQEMFE----RIEKSQKPIVAAISGSCLGGGLELALACHY 132
Query: 125 VIMRRD-KGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGL 183
I +D K +L + EV +GL LP K+ A D++L KKI+ + A +MG+
Sbjct: 133 RIATKDRKTLLGLPEVMLGL-LPGAGGTQRLPKLTGVPAALDMMLTGKKIRADRAKKMGI 191
Query: 184 VE------------AAYDSEEQVAEASMRLAKQLAGRK 209
V+ A ++ E + E +++ A+ LA K
Sbjct: 192 VDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGK 229
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737 |
| >gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 1e-07
Identities = 52/181 (28%), Positives = 73/181 (40%), Gaps = 25/181 (13%)
Query: 50 ALITTSHGKFFSNGFDLA-WAQAAGSRTGA-RERLHYMVESFRPVVAAMMDLPMPTVAAV 107
A+I + G F G D+ A + G+ +RL + V LP+P +AA+
Sbjct: 50 AVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVPVIAAL 109
Query: 108 NGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFA-ALFRAKVGSATARRDV 166
G GL +AL D I D + M E GL +PD R V R+DV
Sbjct: 110 EGVCFGGGLQIALGADIRIAAPDTKLSIM-EAKWGL-VPDMAGTVSLRGLV-----RKDV 162
Query: 167 LLR----AKKIKGEEALRMGLV--------EAAYDSEEQVAEAS---MRLAKQLAGRKWA 211
A+ EEAL +GLV AA ++A+ S + AK+L R W
Sbjct: 163 ARELTYTARVFSAEEALELGLVTHVSDDPLAAALALAREIAQRSPDAIAAAKRLINRSWT 222
Query: 212 G 212
Sbjct: 223 A 223
|
Length = 262 |
| >gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-07
Identities = 48/163 (29%), Positives = 70/163 (42%), Gaps = 15/163 (9%)
Query: 35 LSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQA---AGSRTGARE--RLHYMVESF 89
L+ A+ A ++ T GK F G DL W +A A T E RL M+
Sbjct: 37 LTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMML--- 93
Query: 90 RPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF 149
A+ DLP P + + G A G+ L D I ++E +GL P
Sbjct: 94 ----KALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIA-VSGARFGLTETRLGLI-PATI 147
Query: 150 AALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEE 192
+ A++G A ARR V + A+ EEA+R+GL+ +E
Sbjct: 148 SPYVVARMGEANARR-VFMSARLFDAEEAVRLGLLSRVVPAER 189
|
Length = 262 |
| >gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA hydratase | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 2e-07
Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 14/168 (8%)
Query: 33 SILSAIAKAKAEATPGSAL---ITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESF 89
++++A++ A E SAL + + G FS G A ++ M+ S
Sbjct: 27 AMIAALSAALGEHLEDSALRAVLLDAEGPHFSFG--------ASVAEHMPDQCAAMLASL 78
Query: 90 RPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF 149
+V AM+D P+P + AV G GL +A + + + D L E+ +G+ P
Sbjct: 79 HKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPD-AKLGQPEIVLGVFAPAA- 136
Query: 150 AALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEA 197
+ L ++G A D+L + I G E R+GL A + E A A
Sbjct: 137 SCLLPERMGRVAA-EDLLYSGRSIDGAEGARIGLANAVAEDPENAALA 183
|
This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. Length = 251 |
| >gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 2e-07
Identities = 45/183 (24%), Positives = 71/183 (38%), Gaps = 18/183 (9%)
Query: 32 DSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRP 91
D ++ A+ A + G ++ + K F G D + R + +E
Sbjct: 32 DELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQS---THDGGYDGRGTIGLPMEELH- 87
Query: 92 VVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAA 151
+A+ D+P P +A V G+A G L D I +K +G P Y A
Sbjct: 88 --SAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIA-SEKAQFGQVGPKVGSVDPGYGTA 144
Query: 152 LFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWA 211
L VG A R++ ++ +EAL MGLV A ++ AE +KW
Sbjct: 145 LLARVVGEKKA-REIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEV----------QKWC 193
Query: 212 GEV 214
E+
Sbjct: 194 DEI 196
|
Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. Length = 256 |
| >gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-07
Identities = 56/214 (26%), Positives = 87/214 (40%), Gaps = 31/214 (14%)
Query: 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAA------GSRTGAR 79
F I ++ A+ + +++A+ L+ G+ FS G DLAW Q + + AR
Sbjct: 30 FNAQMIRELILALDQVQSDASL-RFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDAR 88
Query: 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEV 139
E M +R L +PT+A V G A L L D I D +SEV
Sbjct: 89 ELAELMYNLYR--------LKIPTLAVVQGAAFGGALGLISCCDMAIGADD-AQFCLSEV 139
Query: 140 DIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEE------- 192
IGL P + +G ARR L A++ G A +GL+ +Y + E
Sbjct: 140 RIGLA-PAVISPFVVKAIGERAARR-YALTAERFDGRRARELGLLAESYPAAELEAQVEA 197
Query: 193 ------QVAEASMRLAKQLAGRKWAGEVYAEIRK 220
+ ++R +K L GE+ +R+
Sbjct: 198 WIANLLLNSPQALRASKDLLREVGDGELSPALRR 231
|
Length = 265 |
| >gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 9e-07
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 100 PMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGS 159
+ TV A+ G A G ++L DY + +G + ++EV +G+ +P ++A LF +V
Sbjct: 107 RLATVCAIRGACPAGGCAVSLCCDYRLQT-TEGTMGLNEVALGIPVPKFWARLFMGRVID 165
Query: 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLA 206
+LLR + ++ EA ++GL++ + EA+ ++
Sbjct: 166 RKVAESLLLRGRLVRPAEAKQLGLIDEVV-PAAALMEAAASAMERAL 211
|
Length = 278 |
| >gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 9e-07
Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 7/195 (3%)
Query: 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYM 85
F P IL A+ A+ + + L+ ++GK FS G DL + A + L +
Sbjct: 26 FNIPMCQEILEALRLAEEDPSV-RFLLINANGKVFSVGGDLVEMKRAVDE-DDVQSLVKI 83
Query: 86 VESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTL 145
E + A+ LP P + V+G A A +A++ D+ I K + V +GL
Sbjct: 84 AELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIA-STKTKFIQAFVGVGLA- 141
Query: 146 PDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
PD + + + + + E+AL G V +S E++ + +L K+L
Sbjct: 142 PDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRVAES-EKLEKTCEQLLKKL 200
Query: 206 AGRKWAGEVYAEIRK 220
R+ + YA I+
Sbjct: 201 --RRGSSNSYAAIKS 213
|
Length = 255 |
| >gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-06
Identities = 41/128 (32%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 99 LPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAK-V 157
L P +AA+NG A G L+++ D I K EV +G+T P + A+ V
Sbjct: 96 LDKPVIAAINGFALGGGCELSMACDIRIASE-KAKFGQPEVGLGIT-PGFGGTQRLARIV 153
Query: 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAE 217
G A+ +++ I EEALR+GLV + E+ + EA LA ++A A
Sbjct: 154 GPGKAK-ELIYTGDMINAEEALRIGLVNKVVEPEKLMEEA-KALANKIAAN-------AP 204
Query: 218 IRKSLCPD 225
I LC D
Sbjct: 205 IAVKLCKD 212
|
Length = 260 |
| >gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase) | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-06
Identities = 40/188 (21%), Positives = 75/188 (39%), Gaps = 17/188 (9%)
Query: 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTG-----ARE 80
F P + I+ A+ A+ + G ++T + K F +G D Q G
Sbjct: 27 FRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGD----QKVRGDYGYIDDSGVH 82
Query: 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVD 140
RL+ + V + P P +A VNG+A G L + D I + +
Sbjct: 83 RLNVL-----DVQRQIRTCPKPVIAMVNGYAIGGGHVLHMMCDLTIA-AENARFGQTGPK 136
Query: 141 IGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMR 200
+G Y ++ VG A R++ ++ ++AL MGLV + + + ++R
Sbjct: 137 VGSFDGGYGSSYMARIVGQKKA-REIWFLCRQYDAKQALDMGLVNTVVPLAD-LEKETVR 194
Query: 201 LAKQLAGR 208
+++ +
Sbjct: 195 WCREILQK 202
|
This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259 |
| >gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 14/121 (11%)
Query: 92 VVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDK--GVLYMSEVDIGLTLPDYF 149
V+ A+ L +PT+AA+ G G +A + D I G I TL +
Sbjct: 94 VLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFG------FPIARTLGNCL 147
Query: 150 A----ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
+ A A +G+A +D+L A+ ++ EEAL GLV + A A LA+ L
Sbjct: 148 SMSNLARLVALLGAARV-KDMLFTARLLEAEEALAAGLVNEVVEDAALDARAD-ALAELL 205
Query: 206 A 206
A
Sbjct: 206 A 206
|
Length = 262 |
| >gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 14/160 (8%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNG 109
A++ T K F+ G D+ AG+ E A+ P P +AAVNG
Sbjct: 55 AIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWE-------AIAQCPKPVIAAVNG 107
Query: 110 HAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAA--LFRAKVGSATARRDVL 167
+A G LA+ D +I+ + E+ +GL +P L RA VG A R +
Sbjct: 108 YALGGGCELAMHAD-IIVAGESASFGQPEIKVGL-MPGAGGTQRLVRA-VGKFKAMR-MA 163
Query: 168 LRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAG 207
L + EAL +GLV + E+ + A + LA+++A
Sbjct: 164 LTGCMVPAPEALAIGLVSEVVEDEQTLPRA-LELAREIAR 202
|
Length = 261 |
| >gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-06
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 24/135 (17%)
Query: 92 VVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDY-VIMRRDKGVLYMSEVDIGLT------ 144
+ A + LP+P VAA++G GL LAL+ Y V K VL + EV +GL
Sbjct: 93 LFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGT 152
Query: 145 --LPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAA------YDSEEQVAE 196
LP +G +TA D++L K+++ ++AL++GLV+ + ++A+
Sbjct: 153 QRLP--------RLIGVSTA-LDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAK 203
Query: 197 ASMRLAKQLAGRKWA 211
+ L R+
Sbjct: 204 KGKPARRPLPVRERL 218
|
Length = 708 |
| >gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 52/177 (29%), Positives = 71/177 (40%), Gaps = 21/177 (11%)
Query: 42 KAEATPG-SALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVV------- 93
+AEA P ++ T G+ F G D+ Q G R+ RP V
Sbjct: 44 RAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRD------TDVRPFVGNRRPDY 97
Query: 94 ----AAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF 149
+ L P +AA+NG A GLT AL D V D + GL
Sbjct: 98 QTRYHFLTALRKPVIAAINGACAGIGLTHALMCD-VRFAADGAKFTTAFARRGLIAEHGI 156
Query: 150 AALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLA 206
+ + VG A A D+LL A+ EEALR+GLV +E + + A+ LA
Sbjct: 157 SWILPRLVGHANAL-DLLLSARTFYAEEALRLGLVNRVVPPDELMERT-LAYAEDLA 211
|
Length = 272 |
| >gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 3e-06
Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 8/166 (4%)
Query: 49 SALITTSHGKFFSNGFDL------AWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMP 102
S +I + G F +G DL + ++G R + ERL ++ + + A+ P
Sbjct: 54 SVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQCRKP 113
Query: 103 TVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATA 162
+AA++G G+ + + D D + EVD+ +T + VG A
Sbjct: 114 VIAAIHGACIGGGVDIVTACDIRYCSED-AFFSVKEVDLAITADLGTLQRLPSIVGYGNA 172
Query: 163 RRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
++ L ++ G EA +GLV + S+E + E +A+ +A +
Sbjct: 173 M-ELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAK 217
|
Length = 275 |
| >gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-06
Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 10/150 (6%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTG--ARERLHYMVESFRPVVAAMMDLPMPTVAAV 107
A++ T G F G DL+ A G A R M R +V +LP P +AA+
Sbjct: 53 AVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIV----ELPKPVIAAI 108
Query: 108 NGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVL 167
+GH A G L + D V+ + ++E IG+ P + ++ A R
Sbjct: 109 DGHVRAGGFGLVGACDIVVAGPE-STFALTEARIGVA-PAIISLTLLPRLSPRAAAR-YY 165
Query: 168 LRAKKIKGEEALRMGLV-EAAYDSEEQVAE 196
L +K EA R+GLV AA D + VA
Sbjct: 166 LTGEKFGAAEAARIGLVTAAADDVDAAVAA 195
|
Length = 260 |
| >gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 6e-06
Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 11/152 (7%)
Query: 36 SAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAA 95
SA K +A+A+ ++ +S F G DL R + + V S R ++
Sbjct: 29 SAFEKIQADASARVVMLRSSVPGVFCAGADLK-----ERRKMSPSEVQKFVNSLRSTFSS 83
Query: 96 MMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRA 155
+ L +PT+A V G A GL LALS D I + V + E GL + R
Sbjct: 84 LEALSIPTIAVVEGAALGGGLELALSCDLRICGEE-AVFGLPET--GLAIIPGAGGTQRL 140
Query: 156 K--VGSATARRDVLLRAKKIKGEEALRMGLVE 185
VG + A ++++ ++I EA MGLV
Sbjct: 141 PRLVGRSRA-KELIFTGRRIGAREAASMGLVN 171
|
Length = 251 |
| >gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 6e-06
Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 25/166 (15%)
Query: 50 ALITTSHG-KFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVN 108
+I T G K F G DL +A + R V R + + LP P +AA+N
Sbjct: 51 VVILTGAGEKAFCAGADLK-ERAGMNEEQVRH----AVSLIRTTMEMVEQLPQPVIAAIN 105
Query: 109 GHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLT--------LPDYFAALFRAKVGSA 160
G A GL LAL+ D+ I + L ++E + + LP VG A
Sbjct: 106 GIALGGGLELALACDFRIA-AESASLGLTETTLAIIPGAGGTQRLPRLIG------VGRA 158
Query: 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLA 206
++++ ++I +EA +GLVE + + E ++ +A+++A
Sbjct: 159 ---KELIYTGRRISAQEAKEIGLVEFVVPAHL-LEEKAIEIAEKIA 200
|
Length = 260 |
| >gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 8e-06
Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 90 RPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLT-LPDY 148
+ V A+ +P PTVAA+ G+A AGLTLAL+ D+ + D +E+ GL D
Sbjct: 89 QQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRV-SGDNVKFGATEILAGLAPSGDG 147
Query: 149 FAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVE 185
A L RA G + A ++++ + EEAL +GL++
Sbjct: 148 MARLTRA-AGPSRA-KELVFSGRFFDAEEALALGLID 182
|
Length = 222 |
| >gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-05
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 98 DLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKV 157
DLP+PTVAA+NG+A G L+ DY + + + E +G+ +P + + ++
Sbjct: 100 DLPVPTVAAINGYALGGGCECVLATDYRVA-SPDARIGLPETKLGI-MPGFGGTVRLPRL 157
Query: 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
A + + K ++ E+AL++G V+A E+ A L + +AG+
Sbjct: 158 IGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGK 208
|
Length = 715 |
| >gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 92 VVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFA- 150
+V AM P P +AAV+G A AG LA++ D + ++ +GL D A
Sbjct: 105 LVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLF-TRVGLAGADMGAC 163
Query: 151 ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLA 206
AL +G A +L + + EE R G + EE +AEA LA++LA
Sbjct: 164 ALLPRIIGQGRASE-LLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQ-ALARRLA 217
|
Length = 277 |
| >gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 51/185 (27%), Positives = 74/185 (40%), Gaps = 17/185 (9%)
Query: 27 GPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGAR---ERLH 83
G P I ++ A+ A+ ++ + K F G D+ A + A RL
Sbjct: 32 GTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIK-EMATLDQASAEAFISRLR 90
Query: 84 YMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGL 143
+ ++ R P+P +A + G GL LA + D I M EV +G
Sbjct: 91 DLCDAVR-------HFPVPVIARIPGWCLGGGLELAAACDLRIA-AHDAQFGMPEVRVG- 141
Query: 144 TLPDYF-AALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLA 202
+P AAL +G A R +LL + I +AL GLV+ E A RLA
Sbjct: 142 -IPSVIHAALLPRLIGWARTRW-LLLTGETIDAAQALAWGLVDRVVPLAELDAAVE-RLA 198
Query: 203 KQLAG 207
LAG
Sbjct: 199 ASLAG 203
|
Length = 256 |
| >gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 10/173 (5%)
Query: 37 AIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHY--MVESFRPVVA 94
A+A A+ + ++T + K F +G D++ Q SR+ A Y VE+ + A
Sbjct: 46 ALAAAEDDDAIRVVVLTGAGEKAFVSGADIS--QFEESRSDAEAVAAYEQAVEAAQ---A 100
Query: 95 AMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFR 154
A+ D PT+A + G+ G+ +AL+ D I D + +GL
Sbjct: 101 ALADYAKPTIACIRGYCIGGGMGIALACDIRIAAED-SRFGIPAARLGLGYGYDGVKNLV 159
Query: 155 AKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAG 207
VG + A+ D+ A++ EALR+GLV +++ + A +AG
Sbjct: 160 DLVGPSAAK-DLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAA-TIAG 210
|
Length = 269 |
| >gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-05
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 14/154 (9%)
Query: 31 IDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFR 90
+ + A+ KA E+ A++ T G F G DL+ A A + + +++
Sbjct: 29 CEELREAVRKAVDESA--RAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDA-- 84
Query: 91 PVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFA 150
P+P +AA+NG A AGL LA++ D ++ + G+ L ++
Sbjct: 85 --------APVPVIAAINGPAIGAGLQLAMACDLRVV-APEAYFQFPVAKYGIALDNWTI 135
Query: 151 ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLV 184
+ VG A R +LL A+K+ E+AL G+
Sbjct: 136 RRLSSLVGGGRA-RAMLLGAEKLTAEQALATGMA 168
|
Length = 243 |
| >gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 57/208 (27%), Positives = 86/208 (41%), Gaps = 19/208 (9%)
Query: 3 TLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSN 62
+E+ G V +TL DV + F I + +A A+ + A++ GK F
Sbjct: 7 EIEQRGQVATVTLN-RPDV-RNAFNETVIAELTAAFRALDADDSV-RAVVLAGAGKAFCA 63
Query: 63 GFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDL----PMPTVAAVNGHAAAAGLTL 118
G DL W + + R +A M+ P P +A V+G A A G+ L
Sbjct: 64 GADLNWMKKMAGYSDDENRADARR------LADMLRAIYRCPKPVIARVHGDAYAGGMGL 117
Query: 119 ALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEA 178
+ D + D V +SEV +GL +P + +G ARR L A++ EA
Sbjct: 118 VAACDIAVA-ADHAVFCLSEVRLGL-IPATISPYVIRAMGERAARRYFLT-AERFDAAEA 174
Query: 179 LRMGLVEAAYDSEE---QVAEASMRLAK 203
LR+GLV +E +V E L
Sbjct: 175 LRLGLVHEVVPAEALDAKVDELLAALVA 202
|
Length = 262 |
| >gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-05
Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 22/169 (13%)
Query: 50 ALITTSHGKFFSNGFDLAWAQA---AGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAA 106
++ T G+ FS+G D A T L M E V+ A+ L P +AA
Sbjct: 57 VVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSM-ELLDDVILALRRLHQPVIAA 115
Query: 107 VNGHAAAAGLTLALSHDYVIMR-----RDKGV---LYMSEVDIGLTLPDYFAALFRAKVG 158
VNG A GL LAL+ D + R G+ L SE+ + LP RA +G
Sbjct: 116 VNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLP-------RA-IG 167
Query: 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAG 207
S+ A +++L + + EEA R+GLV +EQ+ + +A ++AG
Sbjct: 168 SSRA-FEIMLTGRDVDAEEAERIGLVSRQV-PDEQLLDTCYAIAARMAG 214
|
Length = 276 |
| >gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-05
Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 24/142 (16%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARER-LHYMVESFRPVVAAMMDLPMPTVAAVN 108
A++T + K FS G DL QAAG + G E + F DL P +AAVN
Sbjct: 52 AIVTGAGDKAFSAGNDLKE-QAAGGKRGWPESGFGGLTSRF--------DLDKPIIAAVN 102
Query: 109 GHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAA----LFR--AKVGSATA 162
G A G LAL+ D +I+ + + E +GL AA L R ++G A
Sbjct: 103 GVAMGGGFELALACD-LIVAAENATFALPEPRVGL------AALAGGLHRLPRQIGLKRA 155
Query: 163 RRDVLLRAKKIKGEEALRMGLV 184
++L +++ E L +G V
Sbjct: 156 -MGMILTGRRVTAREGLELGFV 176
|
Length = 259 |
| >gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 6e-05
Identities = 48/181 (26%), Positives = 71/181 (39%), Gaps = 15/181 (8%)
Query: 31 IDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFR 90
+ ++ +A+ A+ + ++ + GK F G DL +AA Y F
Sbjct: 40 LAALQAALDAIAADPSV-RVVVLAAAGKAFCAGHDLKEMRAARGLA-------YFRALFA 91
Query: 91 PVVAAMM---DLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPD 147
M LP P +A V+G A AAG L S D + D + V+IGL
Sbjct: 92 RCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVA-ADTARFAVPGVNIGLFCST 150
Query: 148 YFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAG 207
AL R V A ++LL + I A GLV + + A RLA +A
Sbjct: 151 PMVALSRN-VPRKQA-MEMLLTGEFIDAATAREWGLVNRVV-PADALDAAVARLAAVIAA 207
Query: 208 R 208
+
Sbjct: 208 K 208
|
Length = 266 |
| >gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-05
Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 22/172 (12%)
Query: 35 LSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMV--ESFRPV 92
L+A K E +I T G+ F +G DL T A E V PV
Sbjct: 42 LAAAFKRLDEDDSVKVIILTGSGRAFCSGVDL---------TAAEEVFKGDVKDVETDPV 92
Query: 93 VAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYM-SEVDIGLTLPDYFAA 151
A M P + A+NG A AG +AL+ D I+ +G ++ + G+ P + +
Sbjct: 93 -AQMERCRKPIIGAINGFAITAGFEIALACD--ILVASRGAKFIDTHAKFGI-FPSWGLS 148
Query: 152 LFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEE------QVAEA 197
+++ A R+V L A + E A R GLV + E +VAEA
Sbjct: 149 QKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEA 200
|
Length = 265 |
| >gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Query: 99 LPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVG 158
+P +A V G AA G +L + D + R+ ++ D+G Y +A +VG
Sbjct: 134 MPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVG 193
Query: 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEA 197
AR ++ + EEA MG V A E EA
Sbjct: 194 QKFAR-EIFFLGRTYSAEEAHDMGAVNAVVPHAELETEA 231
|
Length = 302 |
| >gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 5e-04
Identities = 48/170 (28%), Positives = 74/170 (43%), Gaps = 21/170 (12%)
Query: 43 AEATPG-SALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMD-LP 100
A + T + +FF+ G DL A + L + RP + +
Sbjct: 41 AATDTSIGVCVITGNARFFAAGADL--------NEMAEKDLAATLNDPRPQLWQRLQAFN 92
Query: 101 MPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAA--LFRAKVG 158
P +AAVNG+A AG LAL D VI + + E+ +G+ +P L R+ VG
Sbjct: 93 KPLIAAVNGYALGAGCELALLCDIVIAGEN-ARFGLPEITLGI-MPGAGGTQRLIRS-VG 149
Query: 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
+ A + V L + I ++A + GLV SE E ++ A QLA +
Sbjct: 150 KSLASQMV-LTGESITAQQAQQAGLV-----SEVFPPELTLERALQLASK 193
|
Length = 255 |
| >gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.001
Identities = 46/193 (23%), Positives = 72/193 (37%), Gaps = 17/193 (8%)
Query: 26 FGPPAIDSILSAIAKAKAEATPGSALIT--TSHGKFFSNGFDLAWAQAAGSRTGARERLH 83
F P +D ++ A A A+ + G L+T K F +G D +G
Sbjct: 43 FRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPR 102
Query: 84 YMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGL 143
V + ++ M P P +A V G+A G L + D I D + + +G
Sbjct: 103 LNVLDLQRLIRTM---PKPVIAMVAGYAIGGGHVLHVVCDLTIA-ADNAIFGQTGPKVGS 158
Query: 144 TLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAK 203
Y ++ VG A R++ ++ EEAL MGLV + E
Sbjct: 159 FDGGYGSSYLARIVGQKKA-REIWFLCRQYDAEEALDMGLVNTVVPHADLEKE------- 210
Query: 204 QLAGRKWAGEVYA 216
+WA E+ A
Sbjct: 211 ---TVQWAREMLA 220
|
Length = 282 |
| >gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.003
Identities = 46/200 (23%), Positives = 72/200 (36%), Gaps = 52/200 (26%)
Query: 50 ALITTSHGKFFSNGFDLA--------WAQAAGSRTGARERLHYMVESFRP----VVAAMM 97
A+I T G+ F G DL+ A +R + R V +
Sbjct: 51 AVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVTLRIF 110
Query: 98 DLPMPTVAAVNGHAAAAGLTLALSHD-----------YVIMRRDKGVLYMSEVDIGLTLP 146
D P +AAVNG A G T+ L+ D +V RR G+ P
Sbjct: 111 DSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRR------------GIV-P 157
Query: 147 DYFAALFRAK-VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEA-------- 197
+ ++ F + VG TA + + + +EAL GLV + + +E + A
Sbjct: 158 EAASSWFLPRLVGLQTA-LEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIA 216
Query: 198 ------SMRLAKQLAGRKWA 211
S+ L +Q+ R
Sbjct: 217 DNTSPVSVALTRQMMWRMAG 236
|
Length = 296 |
| >gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.004
Identities = 52/184 (28%), Positives = 71/184 (38%), Gaps = 39/184 (21%)
Query: 39 AKAKAEATPG-SALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMM 97
A A+A+A ++ T F G DL GS GA++ L A
Sbjct: 39 ALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDAL-------PNPSPAWP 91
Query: 98 DLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSE----------VDI----GL 143
+ P + A+NG A GL LAL+ D +L SE V I GL
Sbjct: 92 AMRKPVIGAINGAAVTGGLELALACD---------ILIASERARFADTHARVGILPGWGL 142
Query: 144 TLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAK 203
+ KVG ARR + L + +ALR GLV +E + + RLA
Sbjct: 143 S------VRLPQKVGIGRARR-MSLTGDFLDAADALRAGLVTEVVPHDELL-PRARRLAA 194
Query: 204 QLAG 207
+AG
Sbjct: 195 SIAG 198
|
Length = 258 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 243 | |||
| PLN02267 | 239 | enoyl-CoA hydratase/isomerase family protein | 100.0 | |
| PRK08139 | 266 | enoyl-CoA hydratase; Validated | 100.0 | |
| PRK09120 | 275 | p-hydroxycinnamoyl CoA hydratase/lyase; Validated | 100.0 | |
| PRK05980 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK09674 | 255 | enoyl-CoA hydratase-isomerase; Provisional | 100.0 | |
| PRK06142 | 272 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05862 | 257 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06190 | 258 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06143 | 256 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05995 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06563 | 255 | enoyl-CoA hydratase; Provisional | 100.0 | |
| TIGR03210 | 256 | badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb | 100.0 | |
| PRK08150 | 255 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07260 | 255 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05674 | 265 | gamma-carboxygeranoyl-CoA hydratase; Validated | 100.0 | |
| PRK06144 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| TIGR02280 | 256 | PaaB1 phenylacetate degradation probable enoyl-CoA | 100.0 | |
| PRK08258 | 277 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK09245 | 266 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07658 | 257 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK09076 | 258 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05869 | 222 | enoyl-CoA hydratase; Validated | 100.0 | |
| PRK08140 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08138 | 261 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06127 | 269 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07327 | 268 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06023 | 251 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05809 | 260 | 3-hydroxybutyryl-CoA dehydratase; Validated | 100.0 | |
| PRK07511 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02664 | 275 | enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA | 100.0 | |
| KOG1680 | 290 | consensus Enoyl-CoA hydratase [Lipid transport and | 100.0 | |
| PLN02600 | 251 | enoyl-CoA hydratase | 100.0 | |
| TIGR01929 | 259 | menB naphthoate synthase (dihydroxynaphthoic acid | 100.0 | |
| PRK07657 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07799 | 263 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PF00378 | 245 | ECH: Enoyl-CoA hydratase/isomerase family; InterPr | 100.0 | |
| PRK07468 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08252 | 254 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05981 | 266 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06688 | 259 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07110 | 249 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 100.0 | |
| PRK05864 | 276 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08259 | 254 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07659 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02888 | 265 | enoyl-CoA hydratase | 100.0 | |
| PRK06213 | 229 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05870 | 249 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08260 | 296 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK03580 | 261 | carnitinyl-CoA dehydratase; Provisional | 100.0 | |
| PRK06494 | 259 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07938 | 249 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN03214 | 278 | probable enoyl-CoA hydratase/isomerase; Provisiona | 100.0 | |
| PRK06495 | 257 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07396 | 273 | dihydroxynaphthoic acid synthetase; Validated | 100.0 | |
| TIGR03189 | 251 | dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy | 100.0 | |
| COG1024 | 257 | CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi | 100.0 | |
| PRK11423 | 261 | methylmalonyl-CoA decarboxylase; Provisional | 100.0 | |
| PRK06210 | 272 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08290 | 288 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06072 | 248 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07509 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08272 | 302 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07827 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07854 | 243 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02921 | 327 | naphthoate synthase | 100.0 | |
| PRK07112 | 255 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 100.0 | |
| PRK12478 | 298 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08321 | 302 | naphthoate synthase; Validated | 100.0 | |
| PRK08788 | 287 | enoyl-CoA hydratase; Validated | 100.0 | |
| PLN02157 | 401 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 100.0 | |
| PRK05617 | 342 | 3-hydroxyisobutyryl-CoA hydrolase; Provisional | 100.0 | |
| PLN02874 | 379 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 100.0 | |
| TIGR03200 | 360 | dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy | 100.0 | |
| KOG1681 | 292 | consensus Enoyl-CoA isomerase [Lipid transport and | 100.0 | |
| PLN02988 | 381 | 3-hydroxyisobutyryl-CoA hydrolase | 100.0 | |
| TIGR03222 | 546 | benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p | 100.0 | |
| PRK08184 | 550 | benzoyl-CoA-dihydrodiol lyase; Provisional | 100.0 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 100.0 | |
| PLN02851 | 407 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 100.0 | |
| cd06558 | 195 | crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy | 100.0 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 100.0 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 100.0 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 100.0 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 100.0 | |
| KOG0016 | 266 | consensus Enoyl-CoA hydratase/isomerase [Lipid tra | 100.0 | |
| TIGR03222 | 546 | benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p | 100.0 | |
| KOG1679 | 291 | consensus Enoyl-CoA hydratase [Lipid transport and | 100.0 | |
| PRK08184 | 550 | benzoyl-CoA-dihydrodiol lyase; Provisional | 100.0 | |
| COG0447 | 282 | MenB Dihydroxynaphthoic acid synthase [Coenzyme me | 100.0 | |
| KOG1682 | 287 | consensus Enoyl-CoA isomerase [Lipid transport and | 100.0 | |
| KOG1684 | 401 | consensus Enoyl-CoA hydratase [Lipid transport and | 99.97 | |
| cd07020 | 187 | Clp_protease_NfeD_1 Nodulation formation efficienc | 99.88 | |
| cd07014 | 177 | S49_SppA Signal peptide peptidase A. Signal peptid | 99.85 | |
| cd07019 | 211 | S49_SppA_1 Signal peptide peptidase A (SppA), a se | 99.73 | |
| cd00394 | 161 | Clp_protease_like Caseinolytic protease (ClpP) is | 99.67 | |
| cd07023 | 208 | S49_Sppa_N_C Signal peptide peptidase A (SppA), a | 99.67 | |
| cd07022 | 214 | S49_Sppa_36K_type Signal peptide peptidase A (SppA | 99.66 | |
| TIGR00706 | 207 | SppA_dom signal peptide peptidase SppA, 36K type. | 99.62 | |
| cd07016 | 160 | S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP- | 99.61 | |
| TIGR00705 | 584 | SppA_67K signal peptide peptidase SppA, 67K type. | 99.59 | |
| cd07021 | 178 | Clp_protease_NfeD_like Nodulation formation effici | 99.51 | |
| cd07018 | 222 | S49_SppA_67K_type Signal peptide peptidase A (SppA | 99.48 | |
| cd07015 | 172 | Clp_protease_NfeD Nodulation formation efficiency | 99.26 | |
| KOG1683 | 380 | consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA | 99.11 | |
| PRK10949 | 618 | protease 4; Provisional | 99.02 | |
| cd07013 | 162 | S14_ClpP Caseinolytic protease (ClpP) is an ATP-de | 99.01 | |
| PRK12553 | 207 | ATP-dependent Clp protease proteolytic subunit; Re | 98.93 | |
| PRK00277 | 200 | clpP ATP-dependent Clp protease proteolytic subuni | 98.92 | |
| PRK12319 | 256 | acetyl-CoA carboxylase subunit alpha; Provisional | 98.85 | |
| PRK14512 | 197 | ATP-dependent Clp protease proteolytic subunit; Pr | 98.85 | |
| cd07017 | 171 | S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP- | 98.82 | |
| PRK11778 | 330 | putative inner membrane peptidase; Provisional | 98.82 | |
| PF00574 | 182 | CLP_protease: Clp protease; InterPro: IPR001907 In | 98.77 | |
| CHL00198 | 322 | accA acetyl-CoA carboxylase carboxyltransferase al | 98.74 | |
| COG0616 | 317 | SppA Periplasmic serine proteases (ClpP class) [Po | 98.73 | |
| PRK05724 | 319 | acetyl-CoA carboxylase carboxyltransferase subunit | 98.67 | |
| TIGR00513 | 316 | accA acetyl-CoA carboxylase, carboxyl transferase, | 98.63 | |
| PLN03230 | 431 | acetyl-coenzyme A carboxylase carboxyl transferase | 98.6 | |
| CHL00028 | 200 | clpP ATP-dependent Clp protease proteolytic subuni | 98.55 | |
| PLN03229 | 762 | acetyl-coenzyme A carboxylase carboxyl transferase | 98.54 | |
| TIGR00493 | 191 | clpP ATP-dependent Clp protease, proteolytic subun | 98.53 | |
| PRK12551 | 196 | ATP-dependent Clp protease proteolytic subunit; Re | 98.35 | |
| PF01343 | 154 | Peptidase_S49: Peptidase family S49 peptidase clas | 98.31 | |
| PRK14514 | 221 | ATP-dependent Clp protease proteolytic subunit; Pr | 98.3 | |
| TIGR03133 | 274 | malonate_beta malonate decarboxylase, beta subunit | 98.26 | |
| PRK05654 | 292 | acetyl-CoA carboxylase subunit beta; Validated | 98.2 | |
| TIGR03134 | 238 | malonate_gamma malonate decarboxylase, gamma subun | 98.19 | |
| PRK14513 | 201 | ATP-dependent Clp protease proteolytic subunit; Pr | 98.16 | |
| TIGR00515 | 285 | accD acetyl-CoA carboxylase, carboxyl transferase, | 98.15 | |
| TIGR00705 | 584 | SppA_67K signal peptide peptidase SppA, 67K type. | 98.09 | |
| COG1030 | 436 | NfeD Membrane-bound serine protease (ClpP class) [ | 98.08 | |
| PRK07189 | 301 | malonate decarboxylase subunit beta; Reviewed | 98.07 | |
| PF01972 | 285 | SDH_sah: Serine dehydrogenase proteinase; InterPro | 98.02 | |
| TIGR01117 | 512 | mmdA methylmalonyl-CoA decarboxylase alpha subunit | 98.01 | |
| CHL00174 | 296 | accD acetyl-CoA carboxylase beta subunit; Reviewed | 97.91 | |
| PRK10949 | 618 | protease 4; Provisional | 97.85 | |
| PF01039 | 493 | Carboxyl_trans: Carboxyl transferase domain; Inter | 97.8 | |
| COG0740 | 200 | ClpP Protease subunit of ATP-dependent Clp proteas | 97.79 | |
| PRK12552 | 222 | ATP-dependent Clp protease-like protein; Reviewed | 97.79 | |
| TIGR01117 | 512 | mmdA methylmalonyl-CoA decarboxylase alpha subunit | 97.69 | |
| PLN02820 | 569 | 3-methylcrotonyl-CoA carboxylase, beta chain | 97.69 | |
| COG0825 | 317 | AccA Acetyl-CoA carboxylase alpha subunit [Lipid m | 97.27 | |
| COG0777 | 294 | AccD Acetyl-CoA carboxylase beta subunit [Lipid me | 97.01 | |
| PF01039 | 493 | Carboxyl_trans: Carboxyl transferase domain; Inter | 96.85 | |
| PLN02820 | 569 | 3-methylcrotonyl-CoA carboxylase, beta chain | 96.78 | |
| COG4799 | 526 | Acetyl-CoA carboxylase, carboxyltransferase compon | 96.58 | |
| KOG0840 | 275 | consensus ATP-dependent Clp protease, proteolytic | 95.33 | |
| COG4799 | 526 | Acetyl-CoA carboxylase, carboxyltransferase compon | 92.82 | |
| KOG0540 | 536 | consensus 3-Methylcrotonyl-CoA carboxylase, non-bi | 91.93 | |
| PF02601 | 319 | Exonuc_VII_L: Exonuclease VII, large subunit; Inte | 91.24 | |
| TIGR00237 | 432 | xseA exodeoxyribonuclease VII, large subunit. This | 89.83 | |
| PF06833 | 234 | MdcE: Malonate decarboxylase gamma subunit (MdcE); | 89.78 | |
| COG1570 | 440 | XseA Exonuclease VII, large subunit [DNA replicati | 87.71 | |
| PRK00286 | 438 | xseA exodeoxyribonuclease VII large subunit; Revie | 86.42 |
| >PLN02267 enoyl-CoA hydratase/isomerase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-50 Score=335.42 Aligned_cols=232 Identities=66% Similarity=1.073 Sum_probs=203.7
Q ss_pred CceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
|+.++++++|++|+|||| +.|++|.+|+.+|.+++++++.|++++.+||++|.|+.||+|.|++++.... ....
T Consensus 1 ~~~~~~~~~v~~i~Lnrp---~~Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~---~~~~ 74 (239)
T PLN02267 1 MCTLEKRGNLFILTLTGD---GEHRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAG---SAPS 74 (239)
T ss_pred CceeEecCCEEEEEeCCC---CcCcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccc---cCHH
Confidence 789999999999999999 4599999999999999999999998764888899999999999999865311 1122
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCH
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSA 160 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~ 160 (243)
....+...+++++.++.++||||||+|||+|+|||++|+++||+||+++++++|++||+++|+++|+++..++++++| .
T Consensus 75 ~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG-~ 153 (239)
T PLN02267 75 RLHLMVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIG-S 153 (239)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcC-h
Confidence 223345567788999999999999999999999999999999999998654799999999999558888889999999 7
Q ss_pred HHH-HHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhccchhhhhc
Q 026127 161 TAR-RDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLGLDMRAVVS 239 (243)
Q Consensus 161 ~~a-~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~~~~~~~~~ 239 (243)
.++ ++++++|++++|+||+++||||+|+++.+++.+++.++|++++..++.+.++..+|+.++++..+.+-.+.|.-++
T Consensus 154 ~~a~~~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 233 (239)
T PLN02267 154 PAARRDVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAARKWNGEVYASIRKSLLPEVCGKLGLDEEVEES 233 (239)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHhcchhhhhhh
Confidence 777 6899999999999999999999999865789999999999999998789999999999999999988877776655
|
|
| >PRK08139 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=342.26 Aligned_cols=212 Identities=22% Similarity=0.289 Sum_probs=192.9
Q ss_pred CceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
++.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|++|| +||+||.|+.||+|.|++++..... ..
T Consensus 12 ~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~----~~ 84 (266)
T PRK08139 12 LLLREDRDGVATLTLNRPQ--AFNALSEAMLAALQAALDAIAADPSVR-VVVLAAAGKAFCAGHDLKEMRAARG----LA 84 (266)
T ss_pred ceEEEeeCCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHHhcCCCee-EEEEecCCCcceeccCHHHHhcccc----hh
Confidence 3678889999999999997 789999999999999999999999999 9999999999999999998754211 22
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCH
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSA 160 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~ 160 (243)
....+.+.+.+++.+|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++++.++++++| .
T Consensus 85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~~~~~l~r~vG-~ 161 (266)
T PRK08139 85 YFRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADT-ARFAVPGVNIGL-FCSTPMVALSRNVP-R 161 (266)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCC-CEEeCcccCcCC-CCCccHHHHHHHhC-H
Confidence 33344556678899999999999999999999999999999999999998 899999999999 78887788999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
.++++++++|++++|+||+++||||+|+|+ +++.+.+.+++++++..| +.++..+|+.++..
T Consensus 162 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 223 (266)
T PRK08139 162 KQAMEMLLTGEFIDAATAREWGLVNRVVPA-DALDAAVARLAAVIAAKS--PAAVRIGKEAFYRQ 223 (266)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCccEeeCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence 999999999999999999999999999997 899999999999999998 89999999999764
|
|
| >PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-50 Score=340.85 Aligned_cols=216 Identities=18% Similarity=0.216 Sum_probs=191.3
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|++|| +|||+|.|++||+|.|++++..... ......
T Consensus 10 i~~~~~~~va~itlnrp~--~~Nal~~~m~~el~~al~~~~~d~~vr-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~ 85 (275)
T PRK09120 10 VKVEVEDGIAWVTLNRPE--KRNAMSPTLNREMIDVLDALEFDDDAG-VLVLTGAGDAWSAGMDLKEYFRETD-AQPEIL 85 (275)
T ss_pred EEEEEECCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHHhCCCce-EEEEEcCCCceecCcCHHHHhhccc-cchhHH
Confidence 678889999999999997 899999999999999999999999999 9999999999999999998743211 111111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
.......+++++.+|.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus 86 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~iG-~ 162 (275)
T PRK09120 86 QERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADE-AQFGLSEINWGI-PPGGGVSKAMADTVG-H 162 (275)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCC-cEecCCccccCC-CCCcchHHHHHHHcC-H
Confidence 2223344567888999999999999999999999999999999999988 899999999999 68876 568999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
.++++++++|+.++|+||+++|||++|+|+ +++.+++.+++++|+..| +.+++.+|+.++....
T Consensus 163 ~~a~~llltg~~~~A~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~ 226 (275)
T PRK09120 163 RDALYYIMTGETFTGRKAAEMGLVNESVPL-AQLRARTRELAAKLLEKN--PVVLRAAKDGFKRVRE 226 (275)
T ss_pred HHHHHHHhcCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999997 899999999999999998 9999999999976533
|
|
| >PRK05980 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-50 Score=338.98 Aligned_cols=215 Identities=24% Similarity=0.336 Sum_probs=191.5
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|++|| +||+||.| ++||+|.|++++..... .....
T Consensus 5 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~~~~ 80 (260)
T PRK05980 5 VLIEIRDGIALLTLNRPE--KLNALNYALIDRLLARLDAIEVDESVR-AVILTGAGDRAFSAGADIHEFSASVA-AGADV 80 (260)
T ss_pred EEEEEECCEEEEEECCcc--cccCCCHHHHHHHHHHHHHHhhCCCcE-EEEEEeCCCCceEcCcCHHHHhhhcc-ccchh
Confidence 567889999999999997 899999999999999999999999999 99999998 79999999998754211 11122
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+.+.+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG- 157 (260)
T PRK05980 81 ALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASER-ALFAKPEIRLGM-PPTFGGTQRLPRLAG- 157 (260)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCC-CEecCcccccCC-CCCchHhhHHHhhcC-
Confidence 23445566677888999999999999999999999999999999999988 899999999999 67776 569999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
...+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++...
T Consensus 158 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~~~~~~ 221 (260)
T PRK05980 158 RKRALELLLTGDAFSAERALEIGLVNAVVPH-EELLPAARALARRIIRHS--PVAVAAILTAVTRGL 221 (260)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCCcccCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999998 789999999999999998 889999999887653
|
|
| >PRK09674 enoyl-CoA hydratase-isomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-50 Score=336.62 Aligned_cols=209 Identities=21% Similarity=0.332 Sum_probs=188.9
Q ss_pred CceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
++.++++++|++||||||+ +.|++|.+|+.+|.+++++++.|++|| +||+||.|++||+|.|++++... +. .
T Consensus 3 ~i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~~~~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~---~~-~- 74 (255)
T PRK09674 3 ELLVSRQQRVLLLTLNRPE--ARNALNNALLTQLVNELEAAATDTSIG-VCVITGNARFFAAGADLNEMAEK---DL-A- 74 (255)
T ss_pred eEEEEeECCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhhCCCcE-EEEEECCCCceecccChHhHhcc---ch-h-
Confidence 3678889999999999997 789999999999999999999999999 99999999999999999987541 10 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
..+.+...+++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 75 --~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~ig- 149 (255)
T PRK09674 75 --ATLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGEN-ARFGLPEITLGI-MPGAGGTQRLIRSVG- 149 (255)
T ss_pred --hhHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCC-CEEeCchhhcCC-CCCccHHHHHHHHhC-
Confidence 122334566888999999999999999999999999999999999998 899999999999 68876 578999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
+.++++++++|+.++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 150 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~ 212 (255)
T PRK09674 150 KSLASQMVLTGESITAQQAQQAGLVSEVFPP-ELTLERALQLASKIARHS--PLALRAAKQALRQS 212 (255)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCcEecCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998 889999999999999998 99999999998754
|
|
| >PRK06142 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-50 Score=339.09 Aligned_cols=217 Identities=22% Similarity=0.306 Sum_probs=192.5
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCC---C---
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGS---R--- 75 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~---~--- 75 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|++|| +||++|.|++||+|.|++++..... .
T Consensus 8 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~ 84 (272)
T PRK06142 8 FTVELADHVAQVTLNRPG--KGNAMNPAFWSELPEIFRWLDADPEVR-AVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGL 84 (272)
T ss_pred EEEEecCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhhCCCeE-EEEEECCCCceecccCHHHHhhhccccccccc
Confidence 567889999999999997 899999999999999999999999999 9999999999999999998754110 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHH
Q 026127 76 TGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFR 154 (243)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~ 154 (243)
.........+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~ 162 (272)
T PRK06142 85 ARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASAD-AKFSVREVDLGM-VADVGSLQRLP 162 (272)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCC-CeecchhhhhCC-CCCchHHHHHH
Confidence 0112233344556678889999999999999999999999999999999999998 899999999999 68776 56999
Q ss_pred HHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 155 AKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 155 ~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
+++| ..++++++++|++++|+||+++||||+|+++.+++.+++.+++++++..| +.++..+|+.++...
T Consensus 163 ~~~G-~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~--~~a~~~~K~~l~~~~ 231 (272)
T PRK06142 163 RIIG-DGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKS--PLAVRGTKEVLDYMR 231 (272)
T ss_pred HHhC-HHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhh
Confidence 9999 99999999999999999999999999999865789999999999999998 999999999998653
|
|
| >PRK05862 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-50 Score=336.65 Aligned_cols=209 Identities=21% Similarity=0.274 Sum_probs=188.1
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||++|.|+.||+|.|++++... +. .+
T Consensus 6 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~---~~-~~- 77 (257)
T PRK05862 6 ILVETRGRVGLITLNRPK--ALNALNDALMDELGAALAAFDADEGIG-AIVITGSEKAFAAGADIKEMADL---SF-MD- 77 (257)
T ss_pred EEEEeeCCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhhCCCee-EEEEECCCCceECCcChHhHhcc---ch-hH-
Confidence 567889999999999997 789999999999999999999999999 99999999999999999987542 11 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
.+...+..++.+|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.+|++++| .
T Consensus 78 --~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-~ 152 (257)
T PRK05862 78 --VYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADT-AKFGQPEIKLGV-LPGMGGSQRLTRAVG-K 152 (257)
T ss_pred --HHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCC-CEEeCchhccCc-CCCccHHHHHHHHhC-H
Confidence 12233445778899999999999999999999999999999999988 899999999999 78887 569999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
.++++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..+ +.++..+|+.++...
T Consensus 153 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~ 215 (257)
T PRK05862 153 AKAMDLCLTGRMMDAAEAERAGLVSRVVPA-DKLLDEALAAATTIASFS--LPAVMMAKEAVNRAY 215 (257)
T ss_pred HHHHHHHHhCCccCHHHHHHcCCCCEeeCH-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998 899999999999999998 899999999997653
|
|
| >PRK06190 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=335.90 Aligned_cols=210 Identities=24% Similarity=0.345 Sum_probs=190.1
Q ss_pred CceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
++.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||++|.|++||+|+|++++..... ..
T Consensus 5 ~v~~~~~~~va~Itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~~~----~~ 77 (258)
T PRK06190 5 ILLVETHDRVRTLTLNRPE--ARNALSAALRRALFAALAEADADDDVD-VVVLTGADPAFCAGLDLKELGGDGS----AY 77 (258)
T ss_pred eEEEEeeCCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCCccCCcCHHHHhcccc----hh
Confidence 4678899999999999997 899999999999999999999999999 9999999999999999998764211 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
.. ...+++++.+|.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 78 ~~---~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG- 151 (258)
T PRK06190 78 GA---QDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASER-ARFADTHARVGI-LPGWGLSVRLPQKVG- 151 (258)
T ss_pred hH---HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCC-CEEECcccccCc-CCCccHHHHHHHHhC-
Confidence 11 234567888999999999999999999999999999999999988 899999999999 78876 568999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
...+++++++|++++|+||+++||||+++|+ +++.+++.+++++++..| +.++..+|+.++...
T Consensus 152 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 215 (258)
T PRK06190 152 IGRARRMSLTGDFLDAADALRAGLVTEVVPH-DELLPRARRLAASIAGNN--PAAVRALKASYDDGA 215 (258)
T ss_pred HHHHHHHHHhCCccCHHHHHHcCCCeEecCH-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999997 889999999999999998 999999999998653
|
|
| >PRK06143 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=335.51 Aligned_cols=210 Identities=25% Similarity=0.337 Sum_probs=189.7
Q ss_pred ceee-EeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchH
Q 026127 2 CTLE-KHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGAR 79 (243)
Q Consensus 2 ~~~~-~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~ 79 (243)
+.++ .+++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.| ++||+|.|++++.... .
T Consensus 8 ~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~~F~aG~Dl~~~~~~~-----~ 79 (256)
T PRK06143 8 AGVTRDDRGVATLTIRNAG--SLNILGTPVILALTQALRWLAADPDVR-VLVLRGAGEKAFIGGADIKEMATLD-----Q 79 (256)
T ss_pred ceeeecCCCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhcCCCcE-EEEEEeCCCCcccCCcCHHHHhhcC-----h
Confidence 3455 46899999999997 899999999999999999999999999 99999998 7999999999875421 2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCC
Q 026127 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGS 159 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~ 159 (243)
.....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|.++++++++++|
T Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~G~-p~~~~~~~l~~~iG- 156 (256)
T PRK06143 80 ASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHD-AQFGMPEVRVGI-PSVIHAALLPRLIG- 156 (256)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCC-CEEeCCccccCC-CCccHHHHHHHhcC-
Confidence 223345566788899999999999999999999999999999999999988 899999999998 66666789999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
..++++++++|+.++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 157 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 219 (256)
T PRK06143 157 WARTRWLLLTGETIDAAQALAWGLVDRVVPL-AELDAAVERLAASLAGCG--PQALRQQKRLLREW 219 (256)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCcCeecCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHH
Confidence 8999999999999999999999999999998 899999999999999998 89999999998765
|
|
| >PRK05995 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=336.64 Aligned_cols=213 Identities=23% Similarity=0.373 Sum_probs=190.3
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++||||+|+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|++||+|+|++++..... .. ...
T Consensus 6 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~-~~~ 80 (262)
T PRK05995 6 LEIEQRGQVATVTLNRPD--VRNAFNETVIAELTAAFRALDADDSVR-AVVLAGAGKAFCAGADLNWMKKMAG-YS-DDE 80 (262)
T ss_pred EEEEeeCCEEEEEEcCcc--cccCCCHHHHHHHHHHHHHHhcCCCeE-EEEEECCCCccccCcCHHHHhhhcc-cC-chh
Confidence 567889999999999997 889999999999999999999999999 9999999999999999998754211 01 111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSAT 161 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~ 161 (243)
.......+++++.+|.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++|+.++++++| ..
T Consensus 81 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~l~~~vg-~~ 157 (262)
T PRK05995 81 NRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADH-AVFCLSEVRLGL-IPATISPYVIRAMG-ER 157 (262)
T ss_pred hhhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCC-CEEeCccccccc-CccchHHHHHHHhC-HH
Confidence 1122345677889999999999999999999999999999999999988 899999999999 78888778999999 99
Q ss_pred HHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
.+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 218 (262)
T PRK05995 158 AARRYFLTAERFDAAEALRLGLVHEVVPA-EALDAKVDELLAALVANS--PQAVRAGKRLVRDV 218 (262)
T ss_pred HHHHHHHcCCccCHHHHHHcCCCCeecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence 99999999999999999999999999997 889999999999999998 89999999999764
|
|
| >PRK06563 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=335.35 Aligned_cols=212 Identities=23% Similarity=0.297 Sum_probs=185.2
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++|+||||+ +.|++|.+|+.+|.++++++++|++|| +||++|.|+.||+|.|++++..... ......
T Consensus 1 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-vvvl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~ 76 (255)
T PRK06563 1 VSRERRGHVLLIGLDRPA--KRNAFDSAMLDDLALALGEYEADDELR-VAVLFAHGEHFTAGLDLADVAPKLA-AGGFPF 76 (255)
T ss_pred CeEEEECCEEEEEECCcc--cccCCCHHHHHHHHHHHHHHhhCCCcE-EEEEECCCCCCcCCcCHHHHhhccc-cchhhh
Confidence 567889999999999997 899999999999999999999999999 9999999999999999998754211 110111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
.. .....+...+.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| .
T Consensus 77 ~~---~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-~ 150 (255)
T PRK06563 77 PE---GGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADN-TRFAQLEVQRGI-LPFGGATLRFPQAAG-W 150 (255)
T ss_pred hh---hhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCC-CEEeChhhhcCC-CCCccHHHHHHHHhh-H
Confidence 11 11222334688999999999999999999999999999999998 899999999999 78776 568999999 8
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
..+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++...
T Consensus 151 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~~ 213 (255)
T PRK06563 151 GNAMRYLLTGDEFDAQEALRLGLVQEVVPP-GEQLERAIELAERIARAA--PLGVQATLASARAAV 213 (255)
T ss_pred HHHHHHHHcCCCcCHHHHHHcCCCcEeeCH-HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998 889999999999999998 899999999987643
|
|
| >TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=334.32 Aligned_cols=210 Identities=22% Similarity=0.320 Sum_probs=188.5
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++||||||+ +.|++|.+|+.+|.+++++++.|++|| +||++|.| ++||+|.|++++... . .. .
T Consensus 4 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVl~g~g~~~F~aG~Dl~~~~~~-~-~~-~- 76 (256)
T TIGR03210 4 ILYEKRNGIAWIMINRPA--KMNAFRGQTCDELIHALKDAGYDRQIG-VIVLAGAGDKAFCTGGDQSTHDGG-Y-DG-R- 76 (256)
T ss_pred eEEEeeCCEEEEEEcCCc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEecCCCCceecCcChHHHhcc-c-cc-h-
Confidence 577889999999999997 899999999999999999999999999 99999998 799999999987431 1 11 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCH
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSA 160 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~ 160 (243)
..+...+..++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+.+|++++.++++++| .
T Consensus 77 --~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~G~~~~~~~~~~l~~~vG-~ 152 (256)
T TIGR03210 77 --GTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEK-AQFGQVGPKVGSVDPGYGTALLARVVG-E 152 (256)
T ss_pred --hHHHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCC-CEEecccccccccCCccHHHHHHHHhC-H
Confidence 112234567888999999999999999999999999999999999988 899999999999446667789999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
..+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 153 ~~A~~lll~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~ia~~~--~~a~~~~K~~l~~~ 214 (256)
T TIGR03210 153 KKAREIWYLCRRYTAQEALAMGLVNAVVPH-DQLDAEVQKWCDEIVEKS--PTAIAIAKRSFNMD 214 (256)
T ss_pred HHHHHHHHhCCCcCHHHHHHcCCceeeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence 999999999999999999999999999997 899999999999999998 89999999999764
|
Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. |
| >PRK08150 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-49 Score=333.77 Aligned_cols=209 Identities=17% Similarity=0.235 Sum_probs=187.8
Q ss_pred CceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
++.++++++|++|+||||+ +.|++|.+|+.+|.+++++++ +++| +||+||.|++||+|.|++++.... ..
T Consensus 3 ~v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~--~~vr-~vvltg~g~~F~aG~Dl~~~~~~~-----~~ 72 (255)
T PRK08150 3 LVSYELDGGVATIGLNRPA--KRNALNDGLIAALRAAFARLP--EGVR-AVVLHGEGDHFCAGLDLSELRERD-----AG 72 (255)
T ss_pred eEEEEeeCCEEEEEEcCCc--cccCCCHHHHHHHHHHHHHhh--cCCe-EEEEECCCCceecCcCHHHHhhcc-----ch
Confidence 3678889999999999997 899999999999999999997 7899 999999999999999999886421 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
........+++++.+|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 73 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~iG- 149 (255)
T PRK08150 73 EGMHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADES-TYFALPEGQRGI-FVGGGGSVRVPRLIG- 149 (255)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCC-CEEeccccccCC-CCCccHHHHHHHHhC-
Confidence 11233455677888999999999999999999999999999999999988 899999999999 67776 568999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
...+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 150 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 212 (255)
T PRK08150 150 VARMTDMMLTGRVYDAQEGERLGLAQYLVPA-GEALDKAMELARRIAQNA--PLTNFAVLNALPRI 212 (255)
T ss_pred HHHHHHHHHcCCcCCHHHHHHcCCccEeeCc-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence 8999999999999999999999999999998 889999999999999998 88999999999764
|
|
| >PRK07260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-49 Score=333.60 Aligned_cols=217 Identities=24% Similarity=0.346 Sum_probs=193.0
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|++++ +||++|.|++||+|+|++++..... ......
T Consensus 4 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~ 79 (255)
T PRK07260 4 IIYEVEDDLATLTLNRPE--VSNGFNIPMCQEILEALRLAEEDPSVR-FLLINANGKVFSVGGDLVEMKRAVD-EDDVQS 79 (255)
T ss_pred eEEEEECCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCcccccCHHHHHhhcc-ccchhh
Confidence 567889999999999997 789999999999999999999999999 9999999999999999998764211 111222
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+.+.+++++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| .
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vg-~ 156 (255)
T PRK07260 80 LVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTK-TKFIQAFVGVGL-APDAGGLFLLTRAIG-L 156 (255)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCC-CEEechHhhcCC-CCCCchhhhhHHhhC-H
Confidence 2334556678889999999999999999999999999999999999998 899999999999 67776 568999999 8
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCG 228 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~ 228 (243)
..+++++++|++++|+||+++||||+++|+ +++.+.+.+++++++..+ +.++..+|+.++.....
T Consensus 157 ~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~~~~ 221 (255)
T PRK07260 157 NRATHLAMTGEALTAEKALEYGFVYRVAES-EKLEKTCEQLLKKLRRGS--SNSYAAIKSLVWESFFK 221 (255)
T ss_pred HHHHHHHHhCCccCHHHHHHcCCcceecCH-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999997 889999999999999998 99999999999876433
|
|
| >PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=336.20 Aligned_cols=215 Identities=22% Similarity=0.318 Sum_probs=189.4
Q ss_pred ceeeEe-CcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKH-GDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~-~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++ ++|++|+||||+ +.|++|.+|+.+|.++++.++.|++|| +||+||.|++||+|.|++++..... .. ..
T Consensus 7 l~~~~~~~~v~~itlnrp~--~~Nal~~~~~~el~~al~~~~~d~~vr-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~-~~ 81 (265)
T PRK05674 7 IELIRDPRGFATLWLSRAD--KNNAFNAQMIRELILALDQVQSDASLR-FLLLRGRGRHFSAGADLAWMQQSAD-LD-YN 81 (265)
T ss_pred EEEEEcCCCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhcCCCee-EEEEECCCCCcccCcCHHHHhhccc-cc-ch
Confidence 466774 789999999997 899999999999999999999999999 9999999999999999998753211 00 10
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCH
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSA 160 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~ 160 (243)
........+.+++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++++.++++++| .
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gi-~p~~~~~~l~~~vG-~ 158 (265)
T PRK05674 82 TNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADD-AQFCLSEVRIGL-APAVISPFVVKAIG-E 158 (265)
T ss_pred hhhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCC-CEEeCcccccCC-CcchhHHHHHHHhC-H
Confidence 11112234567888999999999999999999999999999999999988 899999999999 78888778999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
.++++++++|+.|+|+||+++|||++|+|+ +++.+++.+++++++..| +.++..+|+.++....
T Consensus 159 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~ 222 (265)
T PRK05674 159 RAARRYALTAERFDGRRARELGLLAESYPA-AELEAQVEAWIANLLLNS--PQALRASKDLLREVGD 222 (265)
T ss_pred HHHHHHHHhCcccCHHHHHHCCCcceecCH-HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999997 899999999999999998 9999999999876543
|
|
| >PRK06144 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-49 Score=333.63 Aligned_cols=213 Identities=22% Similarity=0.253 Sum_probs=191.1
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|+||||+ +.|++|.+|+++|.+++++++.|+++| +||++|.| ++||+|.|++++..... ..
T Consensus 10 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVltg~g~~~F~aG~Dl~~~~~~~~----~~ 82 (262)
T PRK06144 10 LLLEVRGGIARITFNRPA--ARNAMTWAMYEGLAEICEAIAADPSIR-AVVLRGAGDKAFVAGTDIAQFRAFST----AE 82 (262)
T ss_pred eEEEeeCCEEEEEecCCc--ccCCCCHHHHHHHHHHHHHHhcCCCce-EEEEecCCCCceecCcCHHHHhhccc----hh
Confidence 578889999999999997 889999999999999999999999999 99999998 79999999998764211 12
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccc-cCcCCChhh-HHHHHHHhC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVD-IGLTLPDYF-AALFRAKVG 158 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~-~Gl~~p~~g-~~~l~~~~g 158 (243)
....+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||++ +|+ +|++| ..++++++|
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~~G~-~p~~g~~~~l~~~vG 160 (262)
T PRK06144 83 DAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPS-ARFGFPIARTLGN-CLSMSNLARLVALLG 160 (262)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCC-CEeechhHHhccC-CCCccHHHHHHHHhC
Confidence 22234455677888999999999999999999999999999999999998 899999997 999 67766 579999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
...+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++....
T Consensus 161 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~i~~~~--~~a~~~~K~~l~~~~~ 225 (262)
T PRK06144 161 -AARVKDMLFTARLLEAEEALAAGLVNEVVED-AALDARADALAELLAAHA--PLTLRATKEALRRLRR 225 (262)
T ss_pred -HHHHHHHHHcCCCcCHHHHHHcCCcCeecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhh
Confidence 8999999999999999999999999999998 899999999999999998 9999999999976543
|
|
| >TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-49 Score=332.25 Aligned_cols=213 Identities=24% Similarity=0.308 Sum_probs=187.8
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++||||||+ +.|++|.+|+.+|.++++++++|+ +| +||+||.|++||+|.|++++..... .....
T Consensus 1 ~~~e~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~-v~-~vVltg~g~~F~aG~Dl~~~~~~~~--~~~~~ 74 (256)
T TIGR02280 1 ILSALEAGVARLTLNRPD--KLNSFTAEMHLELREALERVERDD-AR-ALMLTGAGRGFCAGQDLSERNPTPG--GAPDL 74 (256)
T ss_pred CeEEEECCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhcCC-cE-EEEEECCCCCcccCcCHHHHhhccc--cchhH
Confidence 467889999999999997 899999999999999999999998 99 9999999999999999998754211 00111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+...+..++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| .+++++++| .
T Consensus 75 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~-a~f~~pe~~lG~-~p~~g~~~~l~~~vG-~ 151 (256)
T TIGR02280 75 GRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAES-ARFIQAFAKIGL-IPDSGGTWSLPRLVG-R 151 (256)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCC-CEEeChhhhcCC-CCCccHHHHHHHHhC-H
Confidence 1222233456788899999999999999999999999999999999998 899999999999 67766 568999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
..+++|+++|++++|+||+++|||++|+|+ +++.+++.+++++++..| +.++..+|+.++...
T Consensus 152 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~~~~~~K~~l~~~~ 214 (256)
T TIGR02280 152 ARAMGLAMLGEKLDARTAASWGLIWQVVDD-AALMDEAQALAVHLAAQP--TRGLALTKRAIQAAA 214 (256)
T ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceeeCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhh
Confidence 999999999999999999999999999998 799999999999999998 899999999997543
|
This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). |
| >PRK08258 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-49 Score=335.75 Aligned_cols=216 Identities=20% Similarity=0.209 Sum_probs=191.2
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||+|+ +.|++|.+|+.+|.+++++++.|+++| +|||||.|++||+|.|++++..... ..+...
T Consensus 19 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~eL~~~l~~~~~d~~vr-~vVltg~g~~FsaG~Dl~~~~~~~~-~~~~~~ 94 (277)
T PRK08258 19 FLWEVDDGVATITLNRPE--RKNPLTFESYAELRDLFRELVYADDVK-AVVLTGAGGNFCSGGDVHEIIGPLT-KMDMPE 94 (277)
T ss_pred eEEEEECCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEeCCCCCcccccCHHHHhcccc-ccChhH
Confidence 467889999999999997 899999999999999999999999999 9999999999999999998743211 111222
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+.+.+.+++.+|.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+.+|++| .+++++++| .
T Consensus 95 ~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl~p~~~g~~~~l~~~vG-~ 172 (277)
T PRK08258 95 LLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPS-AKTAFLFTRVGLAGADMGACALLPRIIG-Q 172 (277)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCC-CEEeccccccCcCCCCchHHHHHHHHhC-H
Confidence 3345556678899999999999999999999999999999999999988 899999999999324655 579999999 8
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
..+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.+++.+|+.++...
T Consensus 173 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 235 (277)
T PRK08258 173 GRASELLYTGRSMSAEEGERWGFFNRLVEP-EELLAEAQALARRLAAGP--TFAHGMTKTMLHQEW 235 (277)
T ss_pred HHHHHHHHcCCCCCHHHHHHcCCCcEecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhc
Confidence 999999999999999999999999999997 889999999999999998 999999999997653
|
|
| >PRK09245 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-49 Score=334.54 Aligned_cols=217 Identities=24% Similarity=0.307 Sum_probs=190.8
Q ss_pred CceeeEeCcEEEEEEcCCCCCCCCCCCH-HHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCC-c-c
Q 026127 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGP-PAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSR-T-G 77 (243)
Q Consensus 1 ~~~~~~~~~v~~i~ln~p~~~~~N~l~~-~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~-~-~ 77 (243)
++.++++++|++||||||+ +.|++|. +|+.+|.+++++++.|+++| +|||+|.|++||+|.|++++...... . .
T Consensus 4 ~v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~~l~~~l~~~~~d~~vr-~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (266)
T PRK09245 4 FLLVERDGHIVTLTMNRPE--TRNALSDNDAVDALVAACAAINADRSVR-AVILTGAGTAFSSGGNVKDMRARVGAFGGS 80 (266)
T ss_pred ceEEEEECCEEEEEECCcc--cccCCChHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCcccCcCHHHHhhcccccccc
Confidence 3678899999999999997 8899995 99999999999999999999 99999999999999999987542110 0 0
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHH
Q 026127 78 ARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAK 156 (243)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~ 156 (243)
.......+...+.+++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~ 158 (266)
T PRK09245 81 PADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASET-ARFAESFVKLGL-IPGDGGAWLLPRI 158 (266)
T ss_pred chhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCC-CEEcccccccCc-CCCcchhhhHHHH
Confidence 01112233445567888999999999999999999999999999999999988 899999999999 68876 5689999
Q ss_pred hCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 157 VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
+| ...+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++...
T Consensus 159 vG-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~ 224 (266)
T PRK09245 159 IG-MARAAEMAFTGDAIDAATALEWGLVSRVVPA-DQLLPAARALAERIAANP--PHALRLTKRLLREGQ 224 (266)
T ss_pred hh-HHHHHHHHHcCCCcCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhh
Confidence 99 8999999999999999999999999999997 889999999999999998 899999999997653
|
|
| >PRK07658 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-49 Score=332.75 Aligned_cols=210 Identities=21% Similarity=0.371 Sum_probs=189.7
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|||||| +.|++|.+|+.+|.+++++++.|+++| +||++|.|++||+|.|++++..... ...
T Consensus 4 i~~~~~~~v~~itl~rp---~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~~~----~~~ 75 (257)
T PRK07658 4 LSVRVEDHVAVITLNHP---PANALSSQVLHELSELLDQVEKDDNVR-VVVIHGEGRFFSAGADIKEFTSVTE----AEQ 75 (257)
T ss_pred EEEEeeCCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCceEeCcCHHHHhccCc----hhh
Confidence 57788999999999999 459999999999999999999999999 9999999999999999998754211 122
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+....++++.+|.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| .+++++++| .
T Consensus 76 ~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-~ 152 (257)
T PRK07658 76 ATELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATES-AKLGLPELNLGL-IPGFAGTQRLPRYVG-K 152 (257)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCC-CcccCcccccCC-CCCCcHHHHHHHHhC-H
Confidence 3334556677889999999999999999999999999999999999988 899999999999 78887 579999999 8
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
.++++++++|++++|+||+++||||+|+++ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 153 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~ 214 (257)
T PRK07658 153 AKALEMMLTSEPITGAEALKWGLVNGVFPE-ETLLDDAKKLAKKIAGKS--PATTRAVLELLQTT 214 (257)
T ss_pred HHHHHHHHcCCCcCHHHHHHcCCcCeecCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHH
Confidence 999999999999999999999999999997 899999999999999998 89999999998754
|
|
| >PRK09076 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-49 Score=332.02 Aligned_cols=209 Identities=26% Similarity=0.372 Sum_probs=188.1
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|||||| +.|++|.+|+.+|.++++++++|+++| +||++|.| ++||+|.|++++... . ..
T Consensus 5 v~~~~~~~v~~itlnrp---~~Nal~~~~~~~l~~al~~~~~d~~vr-vvVl~g~g~~~F~aG~Dl~~~~~~-~----~~ 75 (258)
T PRK09076 5 LDLEIDGHVAILTLNNP---PANTWTADSLQALKQLVLELNADKDVY-ALVITGDGEKFFSAGADLNLFADG-D----KA 75 (258)
T ss_pred EEEEEECCEEEEEECCC---CcCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCceEeCcCHHHHhhc-C----hh
Confidence 56788899999999999 459999999999999999999999999 99999998 799999999987542 1 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+...+..++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 76 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~iG- 152 (258)
T PRK09076 76 VAREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQ-AQMALPEASVGL-LPCAGGTQNLPWLVG- 152 (258)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCC-CEeeCcccccCC-CCCccHHHHHHHHhC-
Confidence 12234455677889999999999999999999999999999999999988 899999999999 68776 578999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
...+++++++|++++|+||+++|||++|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 153 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~ 215 (258)
T PRK09076 153 EGWAKRMILCGERVDAATALRIGLVEEVVEK-GEAREAALALAQKVANQS--PSAVAACKTLIQAA 215 (258)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCceecCc-hhHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHH
Confidence 8999999999999999999999999999998 889999999999999998 89999999998754
|
|
| >PRK05869 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-49 Score=323.76 Aligned_cols=204 Identities=22% Similarity=0.297 Sum_probs=184.4
Q ss_pred eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHH
Q 026127 7 HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMV 86 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~ 86 (243)
+++|++|+|||| +.|++|.+|+.+|.+++++++.|+++| +||+||.|++||+|.|++++..... .......
T Consensus 15 ~~~i~~itlnrp---~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~~~-----~~~~~~~ 85 (222)
T PRK05869 15 DAGLATLLLSRP---PTNALTRQVYREIVAAANELGRRDDVA-AVILYGGHEIFSAGDDMPELRTLSA-----QEADTAA 85 (222)
T ss_pred cCCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCcCcCcCHHHHhccCh-----hhHHHHH
Confidence 489999999999 559999999999999999999999999 9999999999999999998764211 1122234
Q ss_pred HHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCHHHHHH
Q 026127 87 ESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSATARRD 165 (243)
Q Consensus 87 ~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~~a~~ 165 (243)
+.+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ..++++++| ...+++
T Consensus 86 ~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~ig-~~~a~~ 162 (222)
T PRK05869 86 RVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDN-VKFGATEILAGL-APSGDGMARLTRAAG-PSRAKE 162 (222)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCC-CEEcCchhccCC-CCCccHHHHHHHHhC-HHHHHH
Confidence 45678899999999999999999999999999999999999987 899999999999 67775 568999999 899999
Q ss_pred HHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 166 l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~ia~~~--~~a~~~~K~~~~~~ 219 (222)
T PRK05869 163 LVFSGRFFDAEEALALGLIDEMVAP-DDVYDAAAAWARRFLDGP--PHALAAAKAGISDV 219 (222)
T ss_pred HHHcCCCcCHHHHHHCCCCCEeeCc-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHH
Confidence 9999999999999999999999998 899999999999999998 99999999999754
|
|
| >PRK08140 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-49 Score=331.97 Aligned_cols=215 Identities=27% Similarity=0.346 Sum_probs=188.3
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++||||||+ +.|++|.+|+.+|.+++++++ |++++ +||++|.|++||+|.|++++..... ......
T Consensus 6 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~~~~~~-d~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~ 80 (262)
T PRK08140 6 ILLAIEAGVATLTLNRPD--KLNSFTREMHRELREALDQVE-DDGAR-ALLLTGAGRGFCAGQDLADRDVTPG-GAMPDL 80 (262)
T ss_pred EEEEeECCEEEEEecCCc--ccCCCCHHHHHHHHHHHHHhc-CCCce-EEEEECCCCCcccCcChHHHhcccc-ccchhh
Confidence 567889999999999997 899999999999999999999 99999 9999999999999999998753210 000111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+...+..++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus 81 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~vG-~ 157 (262)
T PRK08140 81 GESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARS-ASFIQAFVKIGL-VPDSGGTWFLPRLVG-M 157 (262)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCC-CEEeccccccCC-CCCccHHHHHHHHhC-H
Confidence 1222333456788999999999999999999999999999999999998 889999999999 67766 579999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
.++++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++....
T Consensus 158 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~ia~~~--~~a~~~~K~~l~~~~~ 221 (262)
T PRK08140 158 ARALGLALLGEKLSAEQAEQWGLIWRVVDD-AALADEAQQLAAHLATQP--TRGLALIKQAMNASAT 221 (262)
T ss_pred HHHHHHHHcCCCcCHHHHHHcCCccEeeCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999998 789999999999999998 8999999999986543
|
|
| >PRK08138 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-49 Score=332.69 Aligned_cols=208 Identities=22% Similarity=0.302 Sum_probs=187.2
Q ss_pred ceeeE-eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.+++ +++|++|+||||+ +.|++|.+|+.+|.++++++++|+++| +||++|.|++||+|.|++++... + .
T Consensus 9 ~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~---~--~- 79 (261)
T PRK08138 9 VLLERPADGVALLRLNRPE--ARNALNMEVRQQLAEHFTELSEDPDIR-AIVLTGGEKVFAAGADIKEFATA---G--A- 79 (261)
T ss_pred EEEEEccCCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhhCCCee-EEEEECCCCCeeCCcCHHHHhcc---c--h-
Confidence 35666 6899999999997 889999999999999999999999999 99999999999999999987642 1 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
...+...+.+++..+.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 80 -~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG- 155 (261)
T PRK08138 80 -IEMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGES-ASFGQPEIKVGL-MPGAGGTQRLVRAVG- 155 (261)
T ss_pred -hHHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCC-CEeeCccccccc-CCCCcHHHHHHHHhC-
Confidence 1123344567888999999999999999999999999999999999987 899999999999 78876 579999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
...+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~ 218 (261)
T PRK08138 156 KFKAMRMALTGCMVPAPEALAIGLVSEVVED-EQTLPRALELAREIARMP--PLALAQIKEVVLAG 218 (261)
T ss_pred HHHHHHHHHcCCCCCHHHHHHCCCCcEecCc-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 789999999999999988 89999999998754
|
|
| >PRK06127 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-49 Score=332.58 Aligned_cols=213 Identities=23% Similarity=0.329 Sum_probs=191.2
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.++++++++|++|+ +||++|.| ++||+|.|++++..... +..
T Consensus 13 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~~FcaG~Dl~~~~~~~~---~~~ 86 (269)
T PRK06127 13 LLAEKTGGLGRITFNNPA--RHNAMSLDMWEALPQALAAAEDDDAIR-VVVLTGAGEKAFVSGADISQFEESRS---DAE 86 (269)
T ss_pred eEEEEECCEEEEEecCCC--ccCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEEeCCCCceecCcCHHHHhhccc---chH
Confidence 578889999999999997 899999999999999999999999999 99999998 79999999998754211 122
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+....+.++.+|.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 87 ~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG- 163 (269)
T PRK06127 87 AVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAED-SRFGIPAARLGL-GYGYDGVKNLVDLVG- 163 (269)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCC-CEeeCchhhhCC-CCCccHHHHHHHHhC-
Confidence 23344555677889999999999999999999999999999999999988 899999999999 67665 679999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
..++++++++|++++|+||+++|||++|+|+ +++.+++.++|++++..| +.++..+|+.++...
T Consensus 164 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~ 227 (269)
T PRK06127 164 PSAAKDLFYTARRFDAAEALRIGLVHRVTAA-DDLETALADYAATIAGNA--PLTLRAAKRAIAELL 227 (269)
T ss_pred HHHHHHHHHcCCCCCHHHHHHcCCCCEeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999997 899999999999999988 899999999997653
|
|
| >PRK07327 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-49 Score=332.37 Aligned_cols=212 Identities=22% Similarity=0.281 Sum_probs=189.2
Q ss_pred ceeeE-eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.+++ +++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|++||+|.|++++..... . ..
T Consensus 13 i~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~--~~ 86 (268)
T PRK07327 13 LRFDRPPPGVLEIVLNGPG--ALNAADARMHRELADIWRDVDRDPDVR-VVLIRGEGKAFSAGGDLALVEEMAD-D--FE 86 (268)
T ss_pred EEEEecCCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHhhhCCCce-EEEEECCCCCcccccCHHHHhhccC-c--HH
Confidence 45666 5789999999996 789999999999999999999999999 9999999999999999998764211 1 12
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+...+.+++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG- 163 (268)
T PRK07327 87 VRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKD-ARIIDGHTRLGV-AAGDHAAIVWPLLCG- 163 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCC-CEEeCcccccCC-CCCcchhhHHHHHhC-
Confidence 22334455677889999999999999999999999999999999999998 899999999999 67666 578999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
...+++++++|++++|+||+++|||++|+|+ +++.+++.++++++++.| +.+++.+|+.++..
T Consensus 164 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 226 (268)
T PRK07327 164 MAKAKYYLLLCEPVSGEEAERIGLVSLAVDD-DELLPKALEVAERLAAGS--QTAIRWTKYALNNW 226 (268)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHh
Confidence 9999999999999999999999999999997 889999999999999998 99999999999854
|
|
| >PRK06023 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-49 Score=329.28 Aligned_cols=209 Identities=21% Similarity=0.247 Sum_probs=187.2
Q ss_pred ceeeEeC---cEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcch
Q 026127 2 CTLEKHG---DVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGA 78 (243)
Q Consensus 2 ~~~~~~~---~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~ 78 (243)
+.+++++ +|++|+||||+ +.|++|.+|+++|.+++++++.|+++| +||++|.|++||+|.|++++..... .
T Consensus 5 i~~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~~l~~~~~d~~vr-~vVl~g~g~~FcaG~Dl~~~~~~~~--~- 78 (251)
T PRK06023 5 ILVERPGAHPGVQVIRFNRPE--KKNAITRAMYATMAKALKAADADDAIR-AHVFLGTEGCFSAGNDMQDFLAAAM--G- 78 (251)
T ss_pred EEEEeecCcCcEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCeecCcCHHHHhhccc--c-
Confidence 5677776 49999999997 899999999999999999999999999 9999999999999999998754211 1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhH-HHHHHHh
Q 026127 79 RERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFA-ALFRAKV 157 (243)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~-~~l~~~~ 157 (243)
. ..+...+.+++.+|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+ .++++++
T Consensus 79 ~---~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~~ 153 (251)
T PRK06023 79 G---TSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPR-SLFRTPFVDLAL-VPEAGSSLLAPRLM 153 (251)
T ss_pred c---hhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCC-CEecCcccccCC-CCCchHHHHHHHHH
Confidence 1 112334567888999999999999999999999999999999999987 899999999999 788774 6899999
Q ss_pred CCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
| ..++++++++|++++|+||+++|||++|+|. +++.+++.+++++++..| +.++..+|+.++..
T Consensus 154 g-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~ 217 (251)
T PRK06023 154 G-HQRAFALLALGEGFSAEAAQEAGLIWKIVDE-EAVEAETLKAAEELAAKP--PQALQIARDLMRGP 217 (251)
T ss_pred h-HHHHHHHHHhCCCCCHHHHHHcCCcceeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhc
Confidence 9 9999999999999999999999999999997 889999999999999998 99999999999753
|
|
| >PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=330.40 Aligned_cols=211 Identities=22% Similarity=0.329 Sum_probs=190.6
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||++|.| ++||+|+|++++.... ..
T Consensus 6 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~~~~~~~d~~v~-~vvl~g~g~~~F~aG~Dl~~~~~~~-----~~ 77 (260)
T PRK05809 6 VILEKEGHIAVVTINRPK--ALNALNSETLKELDTVLDDIENDDNVY-AVILTGAGEKAFVAGADISEMKDLN-----EE 77 (260)
T ss_pred EEEEEeCCEEEEEECCCc--ccCCCCHHHHHHHHHHHHHHhcCCCcE-EEEEEcCCCCceeeCcChHhHhccC-----hH
Confidence 467888999999999997 889999999999999999999999999 99999999 9999999999875421 12
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+.....+++.+|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 78 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG- 154 (260)
T PRK05809 78 EGRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEK-AKFGQPEVGLGI-TPGFGGTQRLARIVG- 154 (260)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCC-CEEeCcccccCC-CCCccHHHHHHHHhC-
Confidence 22334455577888999999999999999999999999999999999988 899999999999 78887 568999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
...+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++...
T Consensus 155 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 218 (260)
T PRK05809 155 PGKAKELIYTGDMINAEEALRIGLVNKVVEP-EKLMEEAKALANKIAANA--PIAVKLCKDAINRGM 218 (260)
T ss_pred HHHHHHHHHhCCCCCHHHHHHcCCCCcccCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999997 899999999999999998 899999999997653
|
|
| >PRK07511 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=330.63 Aligned_cols=213 Identities=25% Similarity=0.368 Sum_probs=191.8
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||+|+ +.|++|.+|+.+|.+++++++.|+++| +||++|.|+.||+|.|++++..... .....
T Consensus 5 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVl~g~g~~F~~G~Dl~~~~~~~~--~~~~~ 79 (260)
T PRK07511 5 LLSRREGSTLVLTLSNPG--ARNALHPDMYAAGIEALNTAERDPSIR-AVVLTGAGGFFCAGGNLNRLLENRA--KPPSV 79 (260)
T ss_pred eEEEeECCEEEEEECCcc--cccCCCHHHHHHHHHHHHHhccCCCeE-EEEEECCCCCcccCcCHHHHhhccc--ccchh
Confidence 567889999999999997 889999999999999999999999999 9999999999999999998764211 11223
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+...+++++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vg-~ 156 (260)
T PRK07511 80 QAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARD-AKFVMAYVKVGL-TPDGGGSWFLARALP-R 156 (260)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCC-CEEeccccccCc-CCCchHHHHHHHHhC-H
Confidence 3445567788999999999999999999999999999999999999998 899999999999 68776 578999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
..+++++++|++++++||+++||||+|+++ +++.+++.++++++++.| +.++..+|+.++..
T Consensus 157 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~l~~~~--~~~~~~~K~~l~~~ 218 (260)
T PRK07511 157 QLATELLLEGKPISAERLHALGVVNRLAEP-GQALAEALALADQLAAGS--PNALARIKSLIADA 218 (260)
T ss_pred HHHHHHHHhCCCCCHHHHHHcCCccEeeCc-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence 999999999999999999999999999998 789999999999999987 88999999998754
|
|
| >PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=332.76 Aligned_cols=215 Identities=20% Similarity=0.326 Sum_probs=188.9
Q ss_pred eeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCC--cch---
Q 026127 4 LEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSR--TGA--- 78 (243)
Q Consensus 4 ~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~--~~~--- 78 (243)
.+.+++|++|+||||+ +.|++|.+|+.+|.++++.++.|+++| +||++|.|++||+|+|++++...... ..+
T Consensus 12 ~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-vvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 88 (275)
T PLN02664 12 KSPNSSVFHLNLNRPS--QRNALSLDFFTEFPKALSSLDQNPNVS-VIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGR 88 (275)
T ss_pred ecCCCCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEECCCCceeeCcChHHhhhcccccccccchh
Confidence 4457899999999997 899999999999999999999999999 99999999999999999987542110 000
Q ss_pred -HHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHH
Q 026127 79 -RERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAK 156 (243)
Q Consensus 79 -~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~ 156 (243)
......+...+++++.+|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ .|++| .++++++
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~ 166 (275)
T PLN02664 89 SGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSED-AFFSVKEVDLAI-TADLGTLQRLPSI 166 (275)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCC-CEeccHHHhhCC-CCCccHHHHHHHH
Confidence 1223344455677888999999999999999999999999999999999998 899999999999 67776 5689999
Q ss_pred hCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 157 VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
+| ..++++++++|++++|+||+++||||+|+|+.+++.+.+.+++++++..| +.+++.+|+.++...
T Consensus 167 vG-~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~--p~a~~~~K~~l~~~~ 233 (275)
T PLN02664 167 VG-YGNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKS--PLAVTGTKAVLLRSR 233 (275)
T ss_pred hC-HHHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence 99 99999999999999999999999999999854789999999999999998 999999999987653
|
|
| >KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=325.74 Aligned_cols=212 Identities=21% Similarity=0.304 Sum_probs=188.2
Q ss_pred eeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHH
Q 026127 4 LEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLH 83 (243)
Q Consensus 4 ~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 83 (243)
...+++|+.|+||||+ .+|+++..++.+|.+++..++.|++++ ++|+||.|+.||+|.|++++..... .+
T Consensus 41 ~~~d~~I~lItlNRP~--~~Nal~~~~m~eL~~A~~~~e~D~s~~-viVltG~gksFcsG~Dl~e~~~~~~----~~--- 110 (290)
T KOG1680|consen 41 VGEDNGIALITLNRPK--ALNALCRATMLELAEAFKDFESDDSVG-VIVLTGSGKSFCSGADLKEMKKDEF----QD--- 110 (290)
T ss_pred eecCCCeEEEEeCChH--HhccccHHHHHHHHHHHHHhhccCccc-EEEEEcCCCccccccCHHHHhhccc----cc---
Confidence 4457899999999997 899999999999999999999999999 9999999999999999999876321 11
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCHHH
Q 026127 84 YMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSATA 162 (243)
Q Consensus 84 ~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~~ 162 (243)
-....+.+.+..+.+.+||+||+|||+|+|||++|++.||+|||+++ ++|++|+.++|+ +|+|| +.+|++.+| .++
T Consensus 111 ~~~~~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~-Akfg~~~~~~Gi-~p~~GGT~rl~r~vG-~s~ 187 (290)
T KOG1680|consen 111 VSDGIFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEG-AKFGFFEIRMGI-IPSWGGTQRLPRIVG-KSR 187 (290)
T ss_pred cccccccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCC-CeecccccccCC-ccCCCchhhHHHHhC-hHH
Confidence 11122344555556899999999999999999999999999999988 899999999999 89887 579999999 999
Q ss_pred HHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhc
Q 026127 163 RRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLG 231 (243)
Q Consensus 163 a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~ 231 (243)
|+++++||++++|+||+++|||++|+|. ++++++|.+++++|+++| +..+...|+.++......+.
T Consensus 188 Ale~~ltg~~~~AqeA~~~GlVn~Vvp~-~~~l~eAv~l~~~Ia~~~--~~~v~~~K~svn~~~e~~l~ 253 (290)
T KOG1680|consen 188 ALEMILTGRRLGAQEAKKIGLVNKVVPS-GDALGEAVKLAEQIAKNS--PLVVRADKESVNAAYETTLF 253 (290)
T ss_pred HHHHHHhcCcccHHHHHhCCceeEeecc-hhHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHhhccHH
Confidence 9999999999999999999999999999 889999999999999998 99999999999885544433
|
|
| >PLN02600 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=328.88 Aligned_cols=205 Identities=23% Similarity=0.369 Sum_probs=186.4
Q ss_pred eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC-CCcccCCCChhhHHhcCCCcchHHHHHHH
Q 026127 7 HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH-GKFFSNGFDLAWAQAAGSRTGARERLHYM 85 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~-g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 85 (243)
+++|++||||||+ +.|++|.+|+.+|.++++++++|+++| +||++|. |++||+|.|++++... . ......+
T Consensus 2 ~~~v~~itlnrp~--~~Nal~~~~~~~l~~~~~~~~~d~~vr-~vVl~g~~g~~F~aG~Dl~~~~~~-~----~~~~~~~ 73 (251)
T PLN02600 2 DSGIVELRLDRPE--AKNAIGKEMLRGLRSAFEKIQADASAR-VVMLRSSVPGVFCAGADLKERRKM-S----PSEVQKF 73 (251)
T ss_pred CCcEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEecCCCCceeeCcCHHHHhcc-C----hHHHHHH
Confidence 4789999999997 889999999999999999999999999 9999998 5899999999987542 1 1223345
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCHHHHH
Q 026127 86 VESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSATARR 164 (243)
Q Consensus 86 ~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~~a~ 164 (243)
...++.++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| ...++
T Consensus 74 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~~G-~~~a~ 150 (251)
T PLN02600 74 VNSLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEE-AVFGLPETGLAI-IPGAGGTQRLPRLVG-RSRAK 150 (251)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCC-CEEeCcccccCc-CCCchHHHHHHHHhC-HHHHH
Confidence 566778889999999999999999999999999999999999998 899999999999 68776 569999999 99999
Q ss_pred HHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 165 DVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 165 ~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
+|+++|+.++++||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 151 ~l~ltg~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~la~~~--p~a~~~~K~~l~~~ 208 (251)
T PLN02600 151 ELIFTGRRIGAREAASMGLVNYCVPA-GEAYEKALELAQEINQKG--PLAIKMAKKAINEG 208 (251)
T ss_pred HHHHhCCccCHHHHHHcCCCcEeeCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHH
Confidence 99999999999999999999999998 889999999999999998 99999999999754
|
|
| >TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=329.59 Aligned_cols=211 Identities=21% Similarity=0.314 Sum_probs=185.4
Q ss_pred ceeeE-eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchH
Q 026127 2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGAR 79 (243)
Q Consensus 2 ~~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~ 79 (243)
+.+++ +++|++|+||||+ +.|++|.+|+.+|.++++.++.|+++| +||+||.| ++||+|+|++++..... .. .
T Consensus 4 i~~~~~~~~v~~itlnrp~--~~Nal~~~~~~el~~~l~~~~~d~~vr-~vVltg~g~~~F~aG~Dl~~~~~~~~-~~-~ 78 (259)
T TIGR01929 4 IRYEKSTDGIAKITINRPQ--VRNAFRPLTVKEIIQALDDAREDPDIG-VVILTGAGDKAFCSGGDQKVRGDYGY-ID-D 78 (259)
T ss_pred EEEEEcCCCEEEEEecCCc--cccCCCHHHHHHHHHHHHHHhhCCCeE-EEEEEeCCCCceEeCcChHhHhhccc-cc-h
Confidence 35677 8999999999997 889999999999999999999999999 99999999 79999999997643111 00 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChh-hHHHHHHHhC
Q 026127 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDY-FAALFRAKVG 158 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~-g~~~l~~~~g 158 (243)
.... ...+..++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++ ++.++++++|
T Consensus 79 ~~~~--~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~G~-~p~~~~~~~l~~~vG 154 (259)
T TIGR01929 79 SGVH--RLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAEN-ARFGQTGPKVGS-FDGGYGSSYLARIVG 154 (259)
T ss_pred hhHH--HHHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCC-CEecCccccccc-CCCccHHHHHHHHhH
Confidence 1111 112456788899999999999999999999999999999999988 899999999999 6665 4679999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
+.++++++++|++++|+||+++|||++|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 155 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 217 (259)
T TIGR01929 155 -QKKAREIWFLCRQYDAEQALDMGLVNTVVPL-ADLEKETVRWCREILQKS--PMAIRMLKAALNAD 217 (259)
T ss_pred -HHHHHHHHHhCCccCHHHHHHcCCcccccCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence 9999999999999999999999999999997 899999999999999998 99999999999764
|
This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches. |
| >PRK07657 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=330.28 Aligned_cols=210 Identities=21% Similarity=0.364 Sum_probs=190.1
Q ss_pred ceeeE-eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchH
Q 026127 2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGAR 79 (243)
Q Consensus 2 ~~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~ 79 (243)
+.+++ +++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||++|.| ++||+|.|++++... . .
T Consensus 5 v~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~v~-~vVl~g~g~~~F~aG~Dl~~~~~~-~----~ 76 (260)
T PRK07657 5 ISVDYVTPHVVKITLNRPR--AANALSLALLEELQNILTQINEEANVR-VVILTGAGEKAFCAGADLKERAGM-N----E 76 (260)
T ss_pred EEEEEccCCEEEEEEeCCc--ccCCCCHHHHHHHHHHHHHHHhCCCeE-EEEEecCCCCceEcCcChHhhhcC-C----h
Confidence 56776 7899999999997 899999999999999999999999999 99999999 599999999987542 1 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhC
Q 026127 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVG 158 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g 158 (243)
.....+...+++++.+|.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~vG 154 (260)
T PRK07657 77 EQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAES-ASLGLTETTLAI-IPGAGGTQRLPRLIG 154 (260)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCC-CEEcCchhccCc-CCCccHHHHHHHHhC
Confidence 223445566778899999999999999999999999999999999999988 899999999999 68776 578999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
...+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 155 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~ 217 (260)
T PRK07657 155 -VGRAKELIYTGRRISAQEAKEIGLVEFVVPA-HLLEEKAIEIAEKIASNG--PIAVRQAKEAISNG 217 (260)
T ss_pred -HHHHHHHHHhCCCCCHHHHHHcCCCCeecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence 8999999999999999999999999999998 889999999999999998 89999999999764
|
|
| >PRK07799 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=330.89 Aligned_cols=213 Identities=19% Similarity=0.248 Sum_probs=185.1
Q ss_pred CceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
++.++++++|++|+||||+ +.|++|.+|+++|.+++++++.|+++| +||+||.|++||+|.|++++..... .+..
T Consensus 6 ~i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~--~~~~ 80 (263)
T PRK07799 6 HALVEQRGHTLIVTMNRPE--ARNALSTEMLRIMVDAWDRVDNDPDIR-SCILTGAGGAFCAGMDLKAATKKPP--GDSF 80 (263)
T ss_pred eEEEEEECCEEEEEECCCc--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCccccccCHHHHhhccc--cchh
Confidence 3678889999999999997 889999999999999999999999999 9999999999999999998764211 1010
Q ss_pred HHHHH-HHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhC
Q 026127 81 RLHYM-VESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVG 158 (243)
Q Consensus 81 ~~~~~-~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g 158 (243)
....+ ...+.. +.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ..++++++|
T Consensus 81 ~~~~~~~~~~~~-~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG 157 (263)
T PRK07799 81 KDGSYDPSRIDA-LLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGES-AKFGISEAKWSL-FPMGGSAVRLVRQIP 157 (263)
T ss_pred hhhhhhhhHHHH-HHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCC-CEecCcccccCc-CCCccHHHHHHHHhC
Confidence 00001 112222 33578999999999999999999999999999999988 899999999999 78776 568999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
...+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 158 -~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~~~~~~--~~a~~~~K~~l~~~ 220 (263)
T PRK07799 158 -YTVACDLLLTGRHITAAEAKEIGLIGHVVPD-GQALDKALELAELINANG--PLAVQAILRTIRET 220 (263)
T ss_pred -HHHHHHHHHcCCCCCHHHHHHcCCccEecCc-chHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998 789999999999999998 89999999999764
|
|
| >PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-49 Score=329.28 Aligned_cols=215 Identities=28% Similarity=0.455 Sum_probs=198.6
Q ss_pred eeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHH
Q 026127 3 TLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERL 82 (243)
Q Consensus 3 ~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 82 (243)
.++++|+|++|+||+|+ +.|++|.+++++|.++++.+++|+++| +||++|.++.||+|.|++++... +.+..
T Consensus 1 ~~~~~~~v~~i~ln~p~--~~N~l~~~~~~~l~~~l~~~~~d~~v~-vvv~~~~~~~F~~G~Dl~~~~~~-----~~~~~ 72 (245)
T PF00378_consen 1 KYEIEDGVATITLNRPE--KRNALNPEMLDELEEALDEAEADPDVK-VVVISGGGKAFCAGADLKEFLNS-----DEEEA 72 (245)
T ss_dssp EEEEETTEEEEEEECGG--GTTEBSHHHHHHHHHHHHHHHHSTTES-EEEEEESTSESBESB-HHHHHHH-----HHHHH
T ss_pred CEEEECCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhcCCcc-EEEEeecccccccccchhhhhcc-----ccccc
Confidence 37899999999999997 899999999999999999999999999 99999999999999999998863 35677
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCHH
Q 026127 83 HYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSAT 161 (243)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~ 161 (243)
..+.+.+++++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| ..
T Consensus 73 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~G~-~p~~g~~~~l~r~~g-~~ 149 (245)
T PF00378_consen 73 REFFRRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAED-AKFGFPEVRLGI-FPGAGGTFRLPRLIG-PS 149 (245)
T ss_dssp HHHHHHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETT-TEEETGGGGGTS-SSTSTHHHHHHHHHH-HH
T ss_pred cccchhhccccccchhhhhheeecccccccccccccccccceEEeecc-cceeeeecccCc-ccccccccccceeee-cc
Confidence 788899999999999999999999999999999999999999999998 789999999999 67665 679999999 99
Q ss_pred HHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhc
Q 026127 162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLG 231 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~ 231 (243)
.+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..+...++
T Consensus 150 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~~~~~~~~~~~ 216 (245)
T PF00378_consen 150 RARELLLTGEPISAEEALELGLVDEVVPD-EELDEEALELAKRLAAKP--PSALRATKKALNRALEQSLE 216 (245)
T ss_dssp HHHHHHHHTCEEEHHHHHHTTSSSEEESG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHSHHH
T ss_pred cccccccccccchhHHHHhhcceeEEcCc-hhhhHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999998 679999999999999998 99999999999886444433
|
Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A .... |
| >PRK07468 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=329.59 Aligned_cols=213 Identities=22% Similarity=0.319 Sum_probs=187.0
Q ss_pred ceeeEe-CcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKH-GDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~-~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++ ++|++|+||||+ +.|++|.+|+.+|.+++++++.|++++ +||++|.|++||+|.|++++..... .. ..
T Consensus 6 ~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~-~~ 80 (262)
T PRK07468 6 IRIAVDARGVATLTLNRPE--KHNALSARMIAELTTAARRLAADAAVR-VVVLTGAGKSFCAGGDLGWMRAQMT-AD-RA 80 (262)
T ss_pred EEEEEcCCcEEEEEEcCcc--cccCCCHHHHHHHHHHHHHHhcCCCeE-EEEEECCCCcccCCcCHHHHHhhcc-cc-hh
Confidence 456675 689999999997 899999999999999999999999999 9999999999999999998753211 01 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCH
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSA 160 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~ 160 (243)
........+..++.+|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+.++.+++| .
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~~~~vG-~ 157 (262)
T PRK07468 81 TRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSG-ARFGLTETRLGL-IPATISPYVVARMG-E 157 (262)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCC-CEEeCchhccCC-CcccchhhHHhhcc-H
Confidence 11122344667889999999999999999999999999999999999988 899999999999 78887665667899 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
..+++|+++|++++|+||+++|||++|+|+ +++.+.+.++++++++.| +.++..+|+.++..
T Consensus 158 ~~a~~lll~g~~~~a~eA~~~Glv~~v~~~-~~l~~~~~~~a~~l~~~~--~~a~~~~K~~l~~~ 219 (262)
T PRK07468 158 ANARRVFMSARLFDAEEAVRLGLLSRVVPA-ERLDAAVEAEVTPYLSCA--PGAVAAAKALVRAL 219 (262)
T ss_pred HHHHHHHHhCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhh
Confidence 999999999999999999999999999997 889999999999999998 89999999998754
|
|
| >PRK08252 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=328.30 Aligned_cols=206 Identities=21% Similarity=0.291 Sum_probs=182.6
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+++|.+++++++.|++|| +||++|.|++||+|.|++++.... . ...
T Consensus 5 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~~---~-~~~ 77 (254)
T PRK08252 5 VLVERRGRVLIITINRPE--ARNAVNAAVAQGLAAALDELDADPDLS-VGILTGAGGTFCAGMDLKAFARGE---R-PSI 77 (254)
T ss_pred EEEEEECCEEEEEECCCc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCceEcCcCHHHHhccc---c-hhh
Confidence 678899999999999997 889999999999999999999999999 999999999999999999876421 1 111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
....+..++. ..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus 78 ---~~~~~~~~~~--~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vg-~ 149 (254)
T PRK08252 78 ---PGRGFGGLTE--RPPRKPLIAAVEGYALAGGFELALACDLIVAARD-AKFGLPEVKRGL-VAAGGGLLRLPRRIP-Y 149 (254)
T ss_pred ---hHHHHHHHHH--hcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCC-CEEeCchhhcCC-CCCchHHHHHHHHcC-H
Confidence 1112222222 4799999999999999999999999999999988 899999999999 67766 679999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
..+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 150 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~ 211 (254)
T PRK08252 150 HIAMELALTGDMLTAERAHELGLVNRLTEP-GQALDAALELAERIAANG--PLAVAASKRIVVES 211 (254)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCcceecCc-chHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence 999999999999999999999999999998 899999999999999998 99999999999765
|
|
| >PRK05981 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=330.09 Aligned_cols=216 Identities=26% Similarity=0.363 Sum_probs=190.1
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcC-CCCeEEEEecCCCcccCCCChhhHHhcCCCc-chH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEA-TPGSALITTSHGKFFSNGFDLAWAQAAGSRT-GAR 79 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~-~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~-~~~ 79 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|+ ++| +||++|.|++||+|+|++++....... ...
T Consensus 6 v~~~~~~~i~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~~v~-vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 82 (266)
T PRK05981 6 VTLDFDGGVAILTLDHPE--VMNAVSIDMLGGLAEALDAIEDGKAEVR-CLVLTGAGRGFCTGANLQGRGSGGRESDSGG 82 (266)
T ss_pred EEEEeECCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhcCCCceE-EEEEeCCCCCcccccCHHhhhcccccccccc
Confidence 577889999999999997 889999999999999999999876 499 999999999999999999875421100 001
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhC
Q 026127 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVG 158 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g 158 (243)
.....+...+++++.+|.++||||||+|||+|+|+|++|+++||+|||+++ ++|++||.++|+ +|++| .+++++++|
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~~e~~lG~-~p~~g~~~~l~~~vg 160 (266)
T PRK05981 83 DAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARS-AYFLQAFRRIGL-VPDGGSTWLLPRLVG 160 (266)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCC-CEEechHhhcCC-CCCccHHHHHHHHhH
Confidence 112334455678999999999999999999999999999999999999988 899999999999 78876 568999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
+..+++++++|++++|+||+++|||++|+|+ +++.+++.+++++++..| +.++..+|+.++...
T Consensus 161 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~l~~~~--~~a~~~~K~~~~~~~ 224 (266)
T PRK05981 161 -KARAMELSLLGEKLPAETALQWGLVNRVVDD-AELMAEAMKLAHELANGP--TVALGLIRKLYWDSP 224 (266)
T ss_pred -HHHHHHHHHhCCCcCHHHHHHcCCceEeeCH-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998 789999999999999988 889999999997653
|
|
| >PRK06688 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=328.83 Aligned_cols=210 Identities=23% Similarity=0.343 Sum_probs=191.1
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||+|+ +.|++|.+++.+|.+++++++.|+++| +||++|.|+.||+|.|++++..... ..
T Consensus 7 i~~~~~~~v~~i~lnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~----~~- 78 (259)
T PRK06688 7 LLVELEDGVLTITINRPD--KKNALTAAMYQALADALEAAATDPAVR-VVVLTGAGRAFSAGGDIKDFPKAPP----KP- 78 (259)
T ss_pred eEEEEECCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCccCccCHHHHhccCc----ch-
Confidence 567889999999999997 899999999999999999999999999 9999999999999999998865321 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
..+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| .
T Consensus 79 -~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~~G-~ 154 (259)
T PRK06688 79 -PDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASES-AKFSLPFAKLGL-CPDAGGSALLPRLIG-R 154 (259)
T ss_pred -HHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCC-CEecCchhhcCC-CCCcchhhHHHHHhh-H
Confidence 234556778899999999999999999999999999999999999988 899999999999 68776 578999999 8
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
..+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++...
T Consensus 155 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-~~l~~~a~~~a~~i~~~~--~~a~~~~K~~l~~~~ 217 (259)
T PRK06688 155 ARAAEMLLLGEPLSAEEALRIGLVNRVVPA-AELDAEADAQAAKLAAGP--ASALRYTKRAINAAT 217 (259)
T ss_pred HHHHHHHHhCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhh
Confidence 999999999999999999999999999997 899999999999999998 889999999987653
|
|
| >PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-48 Score=326.05 Aligned_cols=213 Identities=21% Similarity=0.311 Sum_probs=190.4
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||+|+ +.|++|.+++.+|.+++++++.|+++| +||++|.|++||+|.|++++..... ..
T Consensus 7 ~~~~~~~~v~~i~ln~p~--~~Nal~~~~~~~L~~~l~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~~~----~~- 78 (249)
T PRK07110 7 ELREVEEGIAQVTMQDRV--NKNAFSDELCDQLHEAFDTIAQDPRYK-VVILTGYPNYFATGGTQEGLLSLQT----GK- 78 (249)
T ss_pred EEEEeeCCEEEEEecCCC--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCeeCCcChHHHhhccc----hh-
Confidence 467889999999999997 889999999999999999999999999 9999999999999999998764211 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
..+.. ++++..+.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| +
T Consensus 79 -~~~~~--~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~~g-~ 152 (249)
T PRK07110 79 -GTFTE--ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRE-SVYTANFMKYGF-TPGMGATAILPEKLG-L 152 (249)
T ss_pred -hhHhh--HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCC-CEecCchhccCC-CCCchHHHHHHHHhC-H
Confidence 11221 57888999999999999999999999999999999999998 899999999999 67776 579999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhc
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLG 231 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~ 231 (243)
..+++++++|++++++||+++|||++|+++ +++.+++.++++++++.| +.++..+|+.++......++
T Consensus 153 ~~a~~llltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~ 220 (249)
T PRK07110 153 ALGQEMLLTARYYRGAELKKRGVPFPVLPR-AEVLEKALELARSLAEKP--RHSLVLLKDHLVADRRRRLP 220 (249)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCCeEEeCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhhccHH
Confidence 999999999999999999999999999997 889999999999999998 89999999999866544443
|
|
| >PRK05864 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-48 Score=330.38 Aligned_cols=215 Identities=21% Similarity=0.305 Sum_probs=187.6
Q ss_pred ceeeE-eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCc--ch
Q 026127 2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRT--GA 78 (243)
Q Consensus 2 ~~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~--~~ 78 (243)
+.+++ +++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||++|.|++||+|.|++++....... .+
T Consensus 11 v~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~~l~~~~~d~~vr-vvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 87 (276)
T PRK05864 11 VLVDHPRPEIALITLNRPE--RMNSMAFDVMVPLKEALAEVSYDNSVR-VVVLTGAGRGFSSGADHKSAGVVPHVEGLTR 87 (276)
T ss_pred eEEeeecCCEEEEEecCCc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCeecCcchhhhhcccccccccc
Confidence 55676 7899999999997 889999999999999999999999999 999999999999999999874311000 00
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCC-hhh-HHHHHHH
Q 026127 79 RERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLP-DYF-AALFRAK 156 (243)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p-~~g-~~~l~~~ 156 (243)
..........+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +| ++| +++++++
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl-~p~~~g~~~~l~~~ 165 (276)
T PRK05864 88 PTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSS-AYFRAAGINNGL-TASELGLSYLLPRA 165 (276)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCC-CEecCcccccCC-CCCCcchheehHhh
Confidence 1111223445677888999999999999999999999999999999999988 899999999999 55 666 4689999
Q ss_pred hCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 157 VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
+| ...+++++++|++++|+||+++|||++|+++ +++.+++.++|++|+..| +.++..+|+.++..
T Consensus 166 vG-~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~ 230 (276)
T PRK05864 166 IG-SSRAFEIMLTGRDVDAEEAERIGLVSRQVPD-EQLLDTCYAIAARMAGFS--RPGIELTKRTLWSG 230 (276)
T ss_pred hC-HHHHHHHHHcCCccCHHHHHHcCCcceeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence 99 8999999999999999999999999999998 899999999999999998 88999999998753
|
|
| >PRK08259 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=327.70 Aligned_cols=208 Identities=24% Similarity=0.267 Sum_probs=182.0
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.++++++++|+++| +||++|.|++||+|.|++++..... ..
T Consensus 5 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvltg~g~~FcaG~Dl~~~~~~~~----~~- 76 (254)
T PRK08259 5 VRVERNGPVTTVILNRPE--VRNAVDGPTAAALADAFRAFDADDAAS-VAVLWGAGGTFCAGADLKAVGTGRG----NR- 76 (254)
T ss_pred EEEEEECCEEEEEecCCc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCccCCcChHHHhcccc----hh-
Confidence 467889999999999997 889999999999999999999999999 9999999999999999998754211 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
.... ....+...+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|.+| ++++++++| .
T Consensus 77 ~~~~--~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~iG-~ 151 (254)
T PRK08259 77 LHPS--GDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEED-AVFGVFCRRWGV-PLIDGGTVRLPRLIG-H 151 (254)
T ss_pred hhhh--hcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCC-CEecCcccccCC-CCCccHHHHHHHHhC-H
Confidence 1100 0111222334799999999999999999999999999999998 899999999999 67665 578999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
..+++++++|+.++|+||+++||||+|+|+ +++.+++.++|+++++.| +.++..+|+.++..
T Consensus 152 ~~a~~lll~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~ 213 (254)
T PRK08259 152 SRAMDLILTGRPVDADEALAIGLANRVVPK-GQARAAAEELAAELAAFP--QTCLRADRLSALEQ 213 (254)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCCCEeeCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence 999999999999999999999999999998 899999999999999998 99999999999764
|
|
| >PRK07659 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-48 Score=327.44 Aligned_cols=209 Identities=22% Similarity=0.407 Sum_probs=188.9
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.++++++ .|+++| +||++|.|++||+|.|++++..... ...
T Consensus 8 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~-~d~~vr-vvvl~g~g~~F~aG~Dl~~~~~~~~----~~~ 79 (260)
T PRK07659 8 VVVKYEGRVATIMLNRPE--ALNALDEPMLKELLQALKEV-AESSAH-IVVLRGNGRGFSAGGDIKMMLSSND----ESK 79 (260)
T ss_pred EEEEeeCCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHh-cCCCee-EEEEECCCCCcccccCHHHHhhccC----chh
Confidence 567889999999999997 88999999999999999999 588999 9999999999999999998764211 222
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+...+++++.++..+||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~~~vg-~ 156 (260)
T PRK07659 80 FDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADIS-AKLAMNFIGIGL-IPDGGGHFFLQKRVG-E 156 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCC-CEEcCchhhcCC-CCCCchhhhHHHhcC-H
Confidence 3445666788899999999999999999999999999999999999988 899999999999 67765 578999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
..+++++++|+.++|+||+++||||+|+ + +++.+++.+++++++..| +.++..+|+.++..
T Consensus 157 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~-~~~~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~ 217 (260)
T PRK07659 157 NKAKQIIWEGKKLSATEALDLGLIDEVI-G-GDFQTAAKQKISEWLQKP--LKAMIETKQIYCEL 217 (260)
T ss_pred HHHHHHHHhCCccCHHHHHHcCChHHHh-h-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence 9999999999999999999999999999 6 789999999999999998 89999999998754
|
|
| >PLN02888 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-48 Score=328.36 Aligned_cols=208 Identities=20% Similarity=0.327 Sum_probs=185.2
Q ss_pred ceeeE-eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.+++ +++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||++|.|++||+|+|++++..... ..
T Consensus 11 i~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~----~~ 83 (265)
T PLN02888 11 ILVPKSRNGIATITINRPK--ALNALTRPMMVELAAAFKRLDEDDSVK-VIILTGSGRAFCSGVDLTAAEEVFK----GD 83 (265)
T ss_pred EEEEeccCCEEEEEEcCCC--cccCCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCcccCCCCHHHHHhhcc----ch
Confidence 45665 6899999999997 789999999999999999999999999 9999999999999999998653211 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
. .....+++..|.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 84 -~---~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG- 156 (265)
T PLN02888 84 -V---KDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRG-AKFIDTHAKFGI-FPSWGLSQKLSRIIG- 156 (265)
T ss_pred -h---hHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCC-CEecCccccccC-CCCccHhhHHHHHhC-
Confidence 1 112345677889999999999999999999999999999999988 899999999999 68876 568999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
..++++++++|++++|+||+++||||+|+++ +++.+++.+++++++..+ +.+++.+|+.++...
T Consensus 157 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 220 (265)
T PLN02888 157 ANRAREVSLTAMPLTAETAERWGLVNHVVEE-SELLKKAREVAEAIIKNN--QGMVLRYKSVINDGL 220 (265)
T ss_pred HHHHHHHHHhCCccCHHHHHHcCCccEeeCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999998 789999999999999998 889999999997653
|
|
| >PRK06213 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=318.78 Aligned_cols=215 Identities=23% Similarity=0.332 Sum_probs=191.9
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||+| +.|++|.+++.+|.++++.++ ++++ +||++|.|++||+|.|++++... ...
T Consensus 5 i~~~~~~~v~~itln~~---~~Nal~~~~~~~l~~~l~~~~--~~~~-vvvl~g~g~~F~~G~Dl~~~~~~------~~~ 72 (229)
T PRK06213 5 VSYTLEDGVATITLDDG---KVNALSPAMIDALNAALDQAE--DDRA-VVVITGQPGIFSGGFDLKVMTSG------AQA 72 (229)
T ss_pred EEEEecCCEEEEEeCCC---CCCCCCHHHHHHHHHHHHHhh--ccCc-EEEEeCCCCceEcCcCHHHHhcc------hHh
Confidence 67888999999999998 789999999999999999988 5678 99999999999999999987541 122
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSAT 161 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~ 161 (243)
...+...+.+++.++.++||||||+|||+|+|+|++|+++||+||+++++++|++||+++|+.+|.++..++++++| ..
T Consensus 73 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g-~~ 151 (229)
T PRK06213 73 AIALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLT-PS 151 (229)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcC-HH
Confidence 33455667788999999999999999999999999999999999999875789999999999556666678899999 89
Q ss_pred HHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhcc
Q 026127 162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLGL 232 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~~ 232 (243)
.+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++......++.
T Consensus 152 ~a~~lll~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~~ 219 (229)
T PRK06213 152 AFQRAVINAEMFDPEEAVAAGFLDEVVPP-EQLLARAQAAARELAGLN--MGAHAATKLKVRAAALEAIRA 219 (229)
T ss_pred HHHHHHHcCcccCHHHHHHCCCceeccCh-HHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999997 889999999999999998 999999999999887766653
|
|
| >PRK05870 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=327.31 Aligned_cols=209 Identities=27% Similarity=0.312 Sum_probs=186.6
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|+++| +||++|.|+.||+|.|++++..... .. .
T Consensus 5 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~~~-~~-~-- 77 (249)
T PRK05870 5 VLLDVDDGVALITVNDPD--RRNAVTAEMSAQLRAAVAAAEADPDVH-ALVVTGAGKAFCAGADLTALGAAPG-RP-A-- 77 (249)
T ss_pred EEEEccCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhcCCCee-EEEEECCCCCeecCcChHHHhcccc-cc-h--
Confidence 567888999999999997 899999999999999999999999999 9999999999999999998865211 11 1
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhH-HHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFA-ALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~-~~l~~~~g~~ 160 (243)
......+.+++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+ +++++++| +
T Consensus 78 -~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~~G-~ 153 (249)
T PRK05870 78 -EDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPK-ALFDARFQKLGL-HPGGGATWMLQRAVG-P 153 (249)
T ss_pred -HHHHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCC-CEEeCcccccCc-CCCCcceeeHHhhhC-H
Confidence 222344556778899999999999999999999999999999999988 899999999999 687764 68999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
.++++++++|++++|+||+++||||+|+ +++.+++.+++++++..| +.++..+|+.++...
T Consensus 154 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv---~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~~ 214 (249)
T PRK05870 154 QVARAALLFGMRFDAEAAVRHGLALMVA---DDPVAAALELAAGPAAAP--RELVLATKASMRATA 214 (249)
T ss_pred HHHHHHHHhCCccCHHHHHHcCCHHHHH---hhHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999 369999999999999998 999999999998653
|
|
| >PRK08260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-48 Score=332.39 Aligned_cols=215 Identities=20% Similarity=0.231 Sum_probs=188.6
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCc-----
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRT----- 76 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~----- 76 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +|||+|.|++||+|.|++++.......
T Consensus 6 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (296)
T PRK08260 6 IRYDVADGIATITLNRPD--KLNAFTVTMARELIEAFDAADADDAVR-AVIVTGAGRAFCAGADLSAGGNTFDLDAPRTP 82 (296)
T ss_pred EEEeeeCCEEEEEeCCCc--ccCCCCHHHHHHHHHHHHHHhcCCCeE-EEEEECCCCCeecCcChHHhhhcccccccccc
Confidence 567889999999999997 899999999999999999999999999 999999999999999999864310000
Q ss_pred -------chHHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh
Q 026127 77 -------GARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF 149 (243)
Q Consensus 77 -------~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g 149 (243)
........+.+.+.+++.+|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl-~p~~g 160 (296)
T PRK08260 83 VEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTA-ARFGFVFGRRGI-VPEAA 160 (296)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCC-CEEecchhhcCc-CCCcc
Confidence 001111233444567888999999999999999999999999999999999998 899999999999 78877
Q ss_pred H-HHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcC-CCChhHHHHHHHHHhHH
Q 026127 150 A-ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR-KWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 150 ~-~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~-~~~~~a~~~~k~~l~~~ 225 (243)
+ +++++++| ..++++++++|++++|+||+++|||++|+|+ +++.+++.+++++++.+ + +.++..+|+.++..
T Consensus 161 ~~~~l~r~vG-~~~A~~llltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~i~~~~~--~~a~~~~K~~l~~~ 234 (296)
T PRK08260 161 SSWFLPRLVG-LQTALEWVYSGRVFDAQEALDGGLVRSVHPP-DELLPAARALAREIADNTS--PVSVALTRQMMWRM 234 (296)
T ss_pred hhhhHHHhhC-HHHHHHHHHcCCccCHHHHHHCCCceeecCH-HHHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhc
Confidence 4 68999999 9999999999999999999999999999998 89999999999999985 6 88999999999764
|
|
| >PRK03580 carnitinyl-CoA dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-48 Score=327.10 Aligned_cols=208 Identities=21% Similarity=0.345 Sum_probs=185.0
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|+|||| +.|++|.+|+.+|.+++++++.|++|| +||+||.| ++||+|.|++++..... . ..
T Consensus 5 i~~~~~~~v~~itlnrp---~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvl~g~g~~~F~aG~Dl~~~~~~~~--~-~~ 77 (261)
T PRK03580 5 LHTTRNGSILEITLDRP---KANAIDAKTSFAMGEVFLNFRDDPELR-VAIITGAGEKFFSAGWDLKAAAEGEA--P-DA 77 (261)
T ss_pred EEEEEECCEEEEEECCc---cccCCCHHHHHHHHHHHHHHHhCCCcE-EEEEEeCCCCceecccCHHHHhccCc--c-hh
Confidence 56788999999999999 669999999999999999999999999 99999998 79999999998754211 0 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
.+......++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 78 ---~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~vg- 151 (261)
T PRK03580 78 ---DFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADN-ASFALPEAKLGI-VPDSGGVLRLPKRLP- 151 (261)
T ss_pred ---hhhhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCC-CEEeCcccccCc-CCCccHHHHHHHHhC-
Confidence 11112244677899999999999999999999999999999999988 899999999999 67776 569999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
...+++++++|++++|+||+++|||++|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 152 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 214 (261)
T PRK03580 152 PAIANEMVMTGRRMDAEEALRWGIVNRVVPQ-AELMDRARELAQQLVNSA--PLAIAALKEIYRET 214 (261)
T ss_pred HHHHHHHHHhCCccCHHHHHHcCCCcEecCH-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHH
Confidence 8999999999999999999999999999997 899999999999999998 99999999999754
|
|
| >PRK06494 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-48 Score=326.83 Aligned_cols=207 Identities=22% Similarity=0.300 Sum_probs=182.6
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||++|.| ++||+|.|++++..... . ..
T Consensus 6 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~~F~aG~Dl~~~~~~~~-~--~~ 79 (259)
T PRK06494 6 STVERKGHVTIVTLNRPE--VMNALHLDAHFELEEVFDDFAADPEQW-VAIVTGAGDKAFSAGNDLKEQAAGGK-R--GW 79 (259)
T ss_pred eEEEeECCEEEEEEcCcc--ccCCCCHHHHHHHHHHHHHHhhCCCcE-EEEEEcCCCCceeccccHHhHhhcCc-c--hh
Confidence 567889999999999996 789999999999999999999999999 99999998 79999999998754211 1 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
. ...+..+ ..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 80 ~----~~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vg- 151 (259)
T PRK06494 80 P----ESGFGGL-TSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAEN-ATFALPEPRVGL-AALAGGLHRLPRQIG- 151 (259)
T ss_pred h----hHHHHHH-HHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCC-CEEeCcccccCC-CCCchHHHHHHHHcC-
Confidence 1 1122233 3446899999999999999999999999999999988 899999999999 67766 679999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
...+++++++|+.++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 152 ~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 214 (259)
T PRK06494 152 LKRAMGMILTGRRVTAREGLELGFVNEVVPA-GELLAAAERWADDILACS--PLSIRASKQAVYRG 214 (259)
T ss_pred HHHHHHHHHcCCcCCHHHHHHcCCCcEecCH-hHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998 889999999999999998 89999999998764
|
|
| >PRK07938 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-48 Score=324.83 Aligned_cols=206 Identities=21% Similarity=0.275 Sum_probs=183.2
Q ss_pred eeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHH
Q 026127 4 LEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLH 83 (243)
Q Consensus 4 ~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 83 (243)
.+++++|++|+|||| +.|++|.+|+.+|.+++++++.|++|| +||++|.|++||+|.|++++... +. .....
T Consensus 6 ~~~~~~v~~itlnrp---~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~G~~F~aG~Dl~~~~~~---~~-~~~~~ 77 (249)
T PRK07938 6 TTPEPGIAEVTVDYP---PVNALPSAGWFALADAITAAGADPDTR-VVVLRAEGRGFNAGVDIKELQAT---PG-FTALI 77 (249)
T ss_pred cccCCCEEEEEECCC---CcccCCHHHHHHHHHHHHHhhcCCCeE-EEEEECCCCceecCcCHHHHhhc---cc-hhHHH
Confidence 345789999999999 569999999999999999999999999 99999999999999999987542 11 12222
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHH
Q 026127 84 YMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATAR 163 (243)
Q Consensus 84 ~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a 163 (243)
.....+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ + +++.++++++| ...+
T Consensus 78 ~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~-a~f~~pe~~~G~-~--g~~~~l~~~vg-~~~a 152 (249)
T PRK07938 78 DANRGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDD-ATFGLPEVDRGA-L--GAATHLQRLVP-QHLM 152 (249)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCC-CEeeCccceecC-c--hhHHHHHHhcC-HHHH
Confidence 23345567888999999999999999999999999999999999988 899999999999 4 34568999999 9999
Q ss_pred HHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 164 RDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 164 ~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
++++++|++++|+||+++|||++|+|+ +++++++.+++++++..| +.++..+|+.++..
T Consensus 153 ~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 211 (249)
T PRK07938 153 RALFFTAATITAAELHHFGSVEEVVPR-DQLDEAALEVARKIAAKD--TRVIRAAKEALNGI 211 (249)
T ss_pred HHHHHhCCcCCHHHHHHCCCccEEeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence 999999999999999999999999997 899999999999999998 99999999999754
|
|
| >PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=326.71 Aligned_cols=218 Identities=18% Similarity=0.295 Sum_probs=190.5
Q ss_pred ceeeE-eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC--CcccCCCChhhHHhcCCCcch
Q 026127 2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG--KFFSNGFDLAWAQAAGSRTGA 78 (243)
Q Consensus 2 ~~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g--~~F~~G~Dl~~~~~~~~~~~~ 78 (243)
+.+++ +++|++||||+| +.|++|.+|+.+|.++++++++|+++| +||+||.| ++||+|.|++++.... ..
T Consensus 13 i~~~~~~~~Va~itlnr~---~~Nal~~~~~~eL~~al~~~~~d~~vr-~vVltg~g~~~~FcaG~Dl~~~~~~~--~~- 85 (278)
T PLN03214 13 VRVDRRPGGIAVVWLAKE---PVNSMTLAMWRSLDDALTALENDPTVR-GVVFASGLRRDVFTAGNDIAELYAPK--TS- 85 (278)
T ss_pred eEEEEcCCCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHHcCCCce-EEEEeCCCCCCcccCccCHHHHhccc--cc-
Confidence 56777 689999999998 789999999999999999999999999 99999987 7999999999875311 11
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHh
Q 026127 79 RERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKV 157 (243)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~ 157 (243)
......+.....+++.+|.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+++|+++ ++++++++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~lGl~~p~~~~~~~l~~~~ 164 (278)
T PLN03214 86 AARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTE-GTMGLNEVALGIPVPKFWARLFMGRVI 164 (278)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCC-CEecCcHHHhCCCCCChhHHHHHHHhc
Confidence 1222233344466788999999999999999999999999999999999988 899999999999447665 57999999
Q ss_pred CCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhc
Q 026127 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLG 231 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~ 231 (243)
| ..++++++++|+.|+++||+++||||+|+|+ +++.+.+.+++++++..| +.++..+|+.++......++
T Consensus 165 G-~~~a~~llltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~~~~l~ 234 (278)
T PLN03214 165 D-RKVAESLLLRGRLVRPAEAKQLGLIDEVVPA-AALMEAAASAMERALKLP--SAARAATKALLREEFSAAWE 234 (278)
T ss_pred C-HHHHHHHHHcCCccCHHHHHHcCCCcEecCh-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhHHHHHH
Confidence 9 9999999999999999999999999999998 899999999999999998 89999999999876554443
|
|
| >PRK06495 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-48 Score=324.88 Aligned_cols=209 Identities=23% Similarity=0.301 Sum_probs=186.8
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|||||| +.|++|.+|+.+|.++++++++|+++| +||++|.|++||+|.|++++..... . ...
T Consensus 6 i~~~~~~~v~~itlnrp---~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVl~g~g~~FcaG~Dl~~~~~~~~-~--~~~ 78 (257)
T PRK06495 6 LKLEVSDHVAVVTLDNP---PVNALSRELRDELIAVFDEISERPDVR-VVVLTGAGKVFCAGADLKGRPDVIK-G--PGD 78 (257)
T ss_pred EEEEeeCCEEEEEECCC---ccccCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCCcccCcCHHhHhhccC-C--chh
Confidence 46788899999999999 569999999999999999999999999 9999999999999999998754211 1 122
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSAT 161 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~ 161 (243)
...+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ . ++..++++++| ..
T Consensus 79 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~--~~~~~l~~~~g-~~ 153 (257)
T PRK06495 79 LRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASEN-AVFGLPEIDVGL-A--GGGKHAMRLFG-HS 153 (257)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCC-CEeeChhhccCc-c--ccHHHHHHHhC-HH
Confidence 2334455677888999999999999999999999999999999999988 899999999999 4 34567999999 99
Q ss_pred HHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
.+++|+++|++++|+||+++|||++|+|+ +++.+.+.+++++++..| +.++..+|+.++..
T Consensus 154 ~a~~lll~g~~~~a~eA~~~GLv~~vv~~-~~~~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~ 214 (257)
T PRK06495 154 LTRRMMLTGYRVPAAELYRRGVIEACLPP-EELMPEAMEIAREIASKS--PLATRLAKDALNTI 214 (257)
T ss_pred HHHHHHHcCCeeCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHH
Confidence 99999999999999999999999999997 889999999999999998 99999999999764
|
|
| >PRK07396 dihydroxynaphthoic acid synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-48 Score=327.43 Aligned_cols=211 Identities=19% Similarity=0.324 Sum_probs=185.7
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|++|| +||++|.| ++||+|.|++++..... .. ..
T Consensus 15 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVltg~g~~~F~aG~Dl~~~~~~~~-~~-~~ 89 (273)
T PRK07396 15 ILYKSADGIAKITINRPE--VRNAFRPKTVKEMIDAFADARDDDNIG-VIILTGAGDKAFCSGGDQKVRGYGGY-VD-DD 89 (273)
T ss_pred eEEEecCCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEEeCCCCceEeCcChhhhhcccc-cc-hh
Confidence 567888999999999997 889999999999999999999999999 99999998 69999999998643110 00 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+ ...+++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|+++ +.++++++|
T Consensus 90 ~~~~~--~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~~~~~~l~~~vG- 164 (273)
T PRK07396 90 GVPRL--NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADN-AIFGQTGPKVGS-FDGGYGASYLARIVG- 164 (273)
T ss_pred hhhhh--HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCC-cEEecccccccc-cCCchHHHHHHHHhh-
Confidence 11111 2345777899999999999999999999999999999999998 899999999999 67664 678999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
...+++++++|+.++|+||+++||||+|+|+ +++.+++.++|++++..| +.++..+|+.++..
T Consensus 165 ~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 227 (273)
T PRK07396 165 QKKAREIWFLCRQYDAQEALDMGLVNTVVPL-ADLEKETVRWCREMLQNS--PMALRCLKAALNAD 227 (273)
T ss_pred HHHHHHHHHhCCCcCHHHHHHcCCcCeecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence 8999999999999999999999999999997 899999999999999998 99999999998764
|
|
| >TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=322.71 Aligned_cols=205 Identities=22% Similarity=0.348 Sum_probs=180.8
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++||||+| +.|++|.+|+.+|.++++++++|+++| +||+||.|++||+|.|++++.. . .
T Consensus 3 v~~~~~~~v~~itlnrp---~~Nal~~~~~~~l~~~l~~~~~~~~vr-~vVl~g~g~~FcaG~Dl~~~~~----~---~- 70 (251)
T TIGR03189 3 VWLERDGKLLRLRLARP---KANIVDAAMIAALSAALGEHLEDSALR-AVLLDAEGPHFSFGASVAEHMP----D---Q- 70 (251)
T ss_pred EEEEeeCCEEEEEeCCC---CcCCCCHHHHHHHHHHHHHHHcCCCce-EEEEECCCCceecCcChhhhCc----h---h-
Confidence 46788899999999999 569999999999999999999999999 9999999999999999997532 1 1
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSAT 161 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~ 161 (243)
.......+.+++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++++.++++++| ..
T Consensus 71 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~Gl-~p~~~~~~l~~~vg-~~ 147 (251)
T TIGR03189 71 CAAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPD-AKLGQPEIVLGV-FAPAASCLLPERMG-RV 147 (251)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCC-CEEeCchhhcCC-CCCchHHHHHHHhC-HH
Confidence 1123344567888999999999999999999999999999999999998 899999999999 57666789999999 89
Q ss_pred HHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHH-HHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRL-AKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~-a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
.+++++++|++++|+||+++|||++|+++ ++ +.+.++ +++++..| +.++..+|+.++...
T Consensus 148 ~a~~l~ltg~~~~a~eA~~~Glv~~v~~~-~~--~~a~~~~a~~la~~~--p~a~~~~K~~l~~~~ 208 (251)
T TIGR03189 148 AAEDLLYSGRSIDGAEGARIGLANAVAED-PE--NAALAWFDEHPAKLS--ASSLRFAVRAARLGM 208 (251)
T ss_pred HHHHHHHcCCCCCHHHHHHCCCcceecCc-HH--HHHHHHHHHHHHhCC--HHHHHHHHHHHHhhh
Confidence 99999999999999999999999999986 33 456666 68999998 889999999987654
|
This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. |
| >COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-48 Score=324.46 Aligned_cols=213 Identities=28% Similarity=0.403 Sum_probs=190.9
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||+|+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|++||+|+|++++.. .. . ...
T Consensus 7 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vvltg~g~~FsaG~Dl~~~~~-~~-~--~~~ 79 (257)
T COG1024 7 ILVEREDGIAVITLNRPE--KLNALNLEMLDELAEALDEAEADPDVR-VVVLTGAGKAFSAGADLKELLS-PE-D--GNA 79 (257)
T ss_pred eEEEeeCCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhhCCCeE-EEEEECCCCceecccCHHHHhc-cc-c--hhH
Confidence 466777889999999997 889999999999999999999999999 9999999999999999999874 11 1 122
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+....+.++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+ +|++| +.++++++| .
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~-a~f~~pe~~iGl-~Pg~g~~~~l~r~~G-~ 156 (257)
T COG1024 80 AENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAED-AKFGLPEVNLGL-LPGDGGTQRLPRLLG-R 156 (257)
T ss_pred HHHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCC-cEecCccccccc-CCCCcHHHHHHHhcC-H
Confidence 2256677788999999999999999999999999999999999999988 899999999999 78644 679999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
..++++++||+.++++||+++|||++++++.+++.+.+.+++++++. | +.++..+|+.++....
T Consensus 157 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~-~--~~a~~~~k~~~~~~~~ 220 (257)
T COG1024 157 GRAKELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA-P--PLALAATKRLVRAALE 220 (257)
T ss_pred HHHHHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc-C--HHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999757999999999999998 5 8899999999876643
|
|
| >PRK11423 methylmalonyl-CoA decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=324.32 Aligned_cols=207 Identities=16% Similarity=0.317 Sum_probs=185.7
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC--CCcccCCCChhhHHhcCCCcchH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH--GKFFSNGFDLAWAQAAGSRTGAR 79 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~--g~~F~~G~Dl~~~~~~~~~~~~~ 79 (243)
+.++++++|++||||||+ +.|++|.+|+.+|.+++++++.|+ +| +||+||. |++||+|.|++++..... . .
T Consensus 6 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~-v~-~vvltg~~~~~~FcaG~Dl~~~~~~~~--~-~ 78 (261)
T PRK11423 6 VNVVTINKIATITFNNPA--KRNALSKVLIDDLMQALSDLNRPE-IR-VVILRAPSGSKVWSAGHDIHELPSGGR--D-P 78 (261)
T ss_pred eEEEeECCEEEEEEcCcc--ccCCCCHHHHHHHHHHHHHHhcCC-ce-EEEEECCCCCCeeECCcCHHHHhhccc--c-H
Confidence 577889999999999997 899999999999999999999887 99 9999985 389999999998754211 1 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhC
Q 026127 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVG 158 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g 158 (243)
..+...+.+++.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 79 ---~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~~~~g~~~~l~~~vg 153 (261)
T PRK11423 79 ---LSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAAST-STFAMTPANLGV-PYNLSGILNFTNDAG 153 (261)
T ss_pred ---HHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCC-CEecCchhhcCC-CCCccHHHHHHHHhH
Confidence 123445677889999999999999999999999999999999999988 899999999999 56654 679999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 026127 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCP 224 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~ 224 (243)
...+++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..+ +.++..+|+.++.
T Consensus 154 -~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~~~~ 215 (261)
T PRK11423 154 -FHIVKEMFFTASPITAQRALAVGILNHVVEV-EELEDFTLQMAHHISEKA--PLAIAVIKEQLRV 215 (261)
T ss_pred -HHHHHHHHHcCCCcCHHHHHHcCCcCcccCH-HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHh
Confidence 9999999999999999999999999999997 899999999999999998 8999999999874
|
|
| >PRK06210 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-48 Score=327.65 Aligned_cols=215 Identities=25% Similarity=0.325 Sum_probs=186.6
Q ss_pred ceeeEeC-cEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcch-H
Q 026127 2 CTLEKHG-DVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGA-R 79 (243)
Q Consensus 2 ~~~~~~~-~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~-~ 79 (243)
+.+++++ +|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||++|.|++||+|.|++++......... .
T Consensus 7 i~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~~l~~~~~d~~vr-~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 83 (272)
T PRK06210 7 VLYEVADSGVAVITLNRPD--RLNAWTPVMEAEVYAAMDRAEADPAVR-VIVLTGAGRGFCAGADMGELQTIDPSDGRRD 83 (272)
T ss_pred EEEEECCCCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHhccCCCee-EEEEECCCCCcccccCHHHHhccCccccccc
Confidence 5678888 99999999997 899999999999999999999999999 99999999999999999987542110000 0
Q ss_pred H----HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHH
Q 026127 80 E----RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFR 154 (243)
Q Consensus 80 ~----~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~ 154 (243)
. ........+++++.+|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~ 161 (272)
T PRK06210 84 TDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADG-AKFTTAFARRGL-IAEHGISWILP 161 (272)
T ss_pred ccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCC-CEEechHHhcCC-CCCCchhhhhH
Confidence 0 00111112456678899999999999999999999999999999999998 899999999999 78877 46899
Q ss_pred HHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcC-CCChhHHHHHHHHHhHH
Q 026127 155 AKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR-KWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 155 ~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~-~~~~~a~~~~k~~l~~~ 225 (243)
+++| ..++++|+++|++++|+||+++||||+|+|+ +++.+++.+++++++.. + +.++..+|+.++..
T Consensus 162 ~~ig-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~i~~~~~--p~a~~~~K~~l~~~ 229 (272)
T PRK06210 162 RLVG-HANALDLLLSARTFYAEEALRLGLVNRVVPP-DELMERTLAYAEDLARNVS--PASMAVIKRQLYED 229 (272)
T ss_pred hhhC-HHHHHHHHHcCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhc
Confidence 9999 9999999999999999999999999999998 88999999999999985 6 89999999999765
|
|
| >PRK08290 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=326.99 Aligned_cols=216 Identities=21% Similarity=0.335 Sum_probs=187.7
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCC-C-----
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGS-R----- 75 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~-~----- 75 (243)
+.++++++|++|+||+|+ +.|++|.+|+.+|.+++++++.|+++| +|||||.|++||+|.|++++..... .
T Consensus 6 v~~~~~~~Va~ItlnrP~--~~Nal~~~~~~eL~~~l~~~~~d~~vr-vvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~ 82 (288)
T PRK08290 6 VRYEVAGRIARITLNRPE--ARNAQNRQMLYELDAAFRRAEADDAVR-VIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQ 82 (288)
T ss_pred EEEEeeCCEEEEEecCcc--ccCCCCHHHHHHHHHHHHHHhcCCCee-EEEEECCCCccccCCCcccccccccccccccc
Confidence 678889999999999997 789999999999999999999999999 9999999999999999997632100 0
Q ss_pred -----------cchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcC
Q 026127 76 -----------TGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLT 144 (243)
Q Consensus 76 -----------~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~ 144 (243)
.............+.+++..|.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~-a~f~~pe~~lGl- 160 (288)
T PRK08290 83 HPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDD-AFFSDPVVRMGI- 160 (288)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCC-CEecCcccccCc-
Confidence 0001111222344567788899999999999999999999999999999999988 899999999998
Q ss_pred CChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 026127 145 LPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCP 224 (243)
Q Consensus 145 ~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~ 224 (243)
|+.+..++++++| ..++++|+++|+.++|+||+++|||++|+++ +++.+++.+++++++..| +.++..+|+.++.
T Consensus 161 -~~~~~~~l~~~iG-~~~A~~llltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~ 235 (288)
T PRK08290 161 -PGVEYFAHPWELG-PRKAKELLFTGDRLTADEAHRLGMVNRVVPR-DELEAETLELARRIAAMP--PFGLRLTKRAVNQ 235 (288)
T ss_pred -CcchHHHHHHHhh-HHHHHHHHHcCCCCCHHHHHHCCCccEeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHH
Confidence 4455667899999 9999999999999999999999999999998 889999999999999998 8999999999986
Q ss_pred HHH
Q 026127 225 DLC 227 (243)
Q Consensus 225 ~~~ 227 (243)
...
T Consensus 236 ~~~ 238 (288)
T PRK08290 236 TLD 238 (288)
T ss_pred HHh
Confidence 543
|
|
| >PRK06072 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=320.13 Aligned_cols=206 Identities=20% Similarity=0.264 Sum_probs=183.8
Q ss_pred CceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
|+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|++|| +||++|.|+.||+|.|++++... .
T Consensus 1 ~i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~a~~~~~~d~~vr-~vVl~g~g~~F~aG~Dl~~~~~~------~- 70 (248)
T PRK06072 1 MIKVESREGYAIVTMSRPD--KLNALNLEMRNEFISKLKQINADPKIR-VVIVTGEGRAFCVGADLSEFAPD------F- 70 (248)
T ss_pred CeEEEEECCEEEEEECCcc--cccCCCHHHHHHHHHHHHHHhcCCCee-EEEEECCCCCcccCcCHHHHhhh------h-
Confidence 7899999999999999997 899999999999999999999999999 99999999999999999987531 0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
...+.+.+..++..+.++||||||+|||+|+|+|++|+++||+||++++ ++|++||.++|+ +|++| +.++++++|
T Consensus 71 -~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~~~~~~Gl-~p~~g~~~~l~~~~g- 146 (248)
T PRK06072 71 -AIDLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRD-VKFVTAFQRLGL-ASDTGVAYFLLKLTG- 146 (248)
T ss_pred -HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC-CEEecchhhcCc-CCCchHHHHHHHHhh-
Confidence 1223445677888999999999999999999999999999999999998 889999999999 67766 568999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
. ++++++++|++++|+||+++||||++ +++.+++.++|++++..| +.++..+|+.++....
T Consensus 147 ~-~a~~lll~g~~~~a~eA~~~Glv~~~----~~~~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~ 207 (248)
T PRK06072 147 Q-RFYEILVLGGEFTAEEAERWGLLKIS----EDPLSDAEEMANRISNGP--FQSYIAAKRMINLVLY 207 (248)
T ss_pred H-HHHHHHHhCCccCHHHHHHCCCcccc----chHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHhh
Confidence 6 78999999999999999999999953 246789999999999998 8999999999986543
|
|
| >PRK07509 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-47 Score=321.46 Aligned_cols=213 Identities=23% Similarity=0.346 Sum_probs=186.5
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchH--
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGAR-- 79 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~-- 79 (243)
+.++++++|++|+||||+ +.|++|.+|+++|.+++++++.|+++| +||++|.|++||+|.|++++..... ....
T Consensus 5 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~ 80 (262)
T PRK07509 5 VSVTIEDGIADVRLNRPD--KMNALDFAMFEELIATIKRLKKDRGIR-AVILSGEGGAFCAGLDVKSVASSPG-NAVKLL 80 (262)
T ss_pred EEEEeeCCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhhCCCCe-EEEEECCCCCcCCCcCHHHHhcccc-hhhhhH
Confidence 578889999999999997 899999999999999999999999999 9999999999999999998764211 1001
Q ss_pred -HHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHh
Q 026127 80 -ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKV 157 (243)
Q Consensus 80 -~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~ 157 (243)
.........+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~~ 158 (262)
T PRK07509 81 FKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPD-TKLSIMEAKWGL-VPDMAGTVSLRGLV 158 (262)
T ss_pred hhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCC-CEeecchhccCC-CCCchHHHHHHHHh
Confidence 111122234566778889999999999999999999999999999999998 899999999999 78776 57999999
Q ss_pred CCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
| ...+++++++|++++|+||+++||||+|+++ +.+++.+++++++..| +.++..+|+.++...
T Consensus 159 g-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~---~~~~a~~~a~~l~~~~--~~~~~~~K~~l~~~~ 221 (262)
T PRK07509 159 R-KDVARELTYTARVFSAEEALELGLVTHVSDD---PLAAALALAREIAQRS--PDAIAAAKRLINRSW 221 (262)
T ss_pred C-HHHHHHHHHcCCCcCHHHHHHcCChhhhhch---HHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence 9 9999999999999999999999999999954 6789999999999998 899999999997654
|
|
| >PRK08272 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=324.30 Aligned_cols=215 Identities=22% Similarity=0.292 Sum_probs=186.4
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCc--ch-
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRT--GA- 78 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~--~~- 78 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|++|| +|||+|.|++||+|.|++++....... ..
T Consensus 12 v~~e~~~~V~~Itlnrp~--~~Nal~~~m~~eL~~al~~~~~d~~vr-vvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~ 88 (302)
T PRK08272 12 MTYEVTGRIARITLNRPE--KGNAITADTPLELRAAVERADLDPGVH-VILVSGAGKGFCAGYDLSAYAEGSSSGGGGGA 88 (302)
T ss_pred EEEEeECCEEEEEecCcc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEEcCCCCcccCcCHHHHhhcccccccccc
Confidence 567888999999999997 899999999999999999999999999 999999999999999999876421100 00
Q ss_pred ---------------HH--HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeecccccc
Q 026127 79 ---------------RE--RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDI 141 (243)
Q Consensus 79 ---------------~~--~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~ 141 (243)
.. ........+++++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~-a~f~~pe~~~ 167 (302)
T PRK08272 89 YPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADD-AKIGYPPTRV 167 (302)
T ss_pred cccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCC-CEecCcchhc
Confidence 00 00123445667888999999999999999999999999999999999998 8999999997
Q ss_pred CcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 026127 142 GLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKS 221 (243)
Q Consensus 142 Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~ 221 (243)
|. +|.. ..+.+++| ..++++++++|++++|+||+++|||++|+|+ +++.+++.++|++|+..| +.++...|+.
T Consensus 168 gg-~~~~--~~~~~~vG-~~~A~~llltG~~i~a~eA~~~GLv~~vv~~-~~l~~~a~~la~~ia~~~--~~a~~~~K~~ 240 (302)
T PRK08272 168 WG-VPAT--GMWAYRLG-PQRAKRLLFTGDCITGAQAAEWGLAVEAVPP-EELDERTERLVERIAAVP--VNQLAMVKLA 240 (302)
T ss_pred cc-CChH--HHHHHHhh-HHHHHHHHHcCCccCHHHHHHcCCCceecCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHH
Confidence 55 3433 35778999 9999999999999999999999999999997 899999999999999998 9999999999
Q ss_pred HhHHHH
Q 026127 222 LCPDLC 227 (243)
Q Consensus 222 l~~~~~ 227 (243)
++..+.
T Consensus 241 l~~~~~ 246 (302)
T PRK08272 241 VNSALL 246 (302)
T ss_pred HHHHHH
Confidence 987654
|
|
| >PRK07827 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-47 Score=320.57 Aligned_cols=212 Identities=25% Similarity=0.354 Sum_probs=185.2
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||+|+ +.|++|.+|+.+|.++++.++.|+++| +||++|.|++||+|.|++++..... ...+.
T Consensus 8 i~~~~~~~v~~i~lnrp~--~~Nal~~~~~~el~~~l~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~--~~~~~ 82 (260)
T PRK07827 8 VRYAVDGGVATLTLDSPH--NRNALSARLVAQLHDGLRAAAADPAVR-AVVLTHTGGTFCAGADLSEAGGGGG--DPYDA 82 (260)
T ss_pred eEEEeeCCEEEEEEcCcc--ccCCCCHHHHHHHHHHHHHHhcCCCee-EEEEEcCCCCccCCcChHHHhhccc--CchhH
Confidence 567889999999999997 899999999999999999999999999 9999999999999999998754211 11222
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhH-HHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFA-ALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~-~~l~~~~g~~ 160 (243)
...+...+.+++.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+ .++++. + .
T Consensus 83 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~l-~-~ 158 (260)
T PRK07827 83 AVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPE-STFALTEARIGV-APAIISLTLLPRL-S-P 158 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCC-CEEeCcccccCC-CCCcccchhHHhh-h-H
Confidence 2234556778899999999999999999999999999999999999988 899999999999 788875 466654 5 5
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
..+++++++|++++|+||+++|||+++++ ++.+++.+++++++..| +.++..+|+.++..+.
T Consensus 159 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~---~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~ 220 (260)
T PRK07827 159 RAAARYYLTGEKFGAAEAARIGLVTAAAD---DVDAAVAALLADLRRGS--PQGLAESKALTTAAVL 220 (260)
T ss_pred HHHHHHHHhCCccCHHHHHHcCCcccchH---HHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhc
Confidence 68899999999999999999999999974 48899999999999998 8999999999987644
|
|
| >PRK07854 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=314.87 Aligned_cols=200 Identities=23% Similarity=0.357 Sum_probs=179.2
Q ss_pred CceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
|+.++++++|++||||||+ +.|++|.+|+.+|.+++++++.+ ++| +||+||.|++||+|.|+++... .
T Consensus 1 ~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~~-~vr-~vvl~g~g~~F~aG~Dl~~~~~-------~- 68 (243)
T PRK07854 1 MIGVTRDGQVLTIELQRPE--RRNALNAELCEELREAVRKAVDE-SAR-AIVLTGQGTVFCAGADLSGDVY-------A- 68 (243)
T ss_pred CceEEEeCCEEEEEeCCCc--cccCCCHHHHHHHHHHHHHHhcC-Cce-EEEEECCCCceecccCCccchh-------H-
Confidence 6889999999999999997 89999999999999999999865 899 9999999999999999985211 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
..+...+.+++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 69 --~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~~G- 143 (243)
T PRK07854 69 --DDFPDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPE-AYFQFPVAKYGI-ALDNWTIRRLSSLVG- 143 (243)
T ss_pred --HHHHHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCC-CEEecccccccc-CCCccHHHHHHHHhC-
Confidence 123345667888999999999999999999999999999999999988 899999999999 67766 568999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCP 224 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~ 224 (243)
...+++++++|++++|+||+++|||++|++. +++.+++++++..| +.++..+|+.++.
T Consensus 144 ~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~-----~~a~~~a~~l~~~~--~~a~~~~K~~l~~ 201 (243)
T PRK07854 144 GGRARAMLLGAEKLTAEQALATGMANRIGTL-----ADAQAWAAEIAGLA--PLALQHAKRVLND 201 (243)
T ss_pred HHHHHHHHHcCCCcCHHHHHHCCCcccccCH-----HHHHHHHHHHHhCC--HHHHHHHHHHHHc
Confidence 9999999999999999999999999999752 27899999999998 8999999999874
|
|
| >PLN02921 naphthoate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=324.81 Aligned_cols=211 Identities=20% Similarity=0.325 Sum_probs=184.8
Q ss_pred ceeeE--eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcch
Q 026127 2 CTLEK--HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGA 78 (243)
Q Consensus 2 ~~~~~--~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~ 78 (243)
+.+++ +++|++|+||||+ +.|++|.+|+.+|.++++.++.|++++ +||++|.| ++||+|+|++++..... ..
T Consensus 67 i~~~~~~~~~Va~ItLnrP~--~~Nal~~~~~~eL~~al~~~~~d~~vr-vVVLtg~G~k~FcaG~Dl~~~~~~~~-~~- 141 (327)
T PLN02921 67 IIYEKAVGEGIAKITINRPE--RRNAFRPRTVKELQRAFNDARDDSSVG-VIILTGKGTKAFCSGGDQAVRGKDGY-VG- 141 (327)
T ss_pred EEEEEecCCCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHhhCCCce-EEEEecCCCCceecCcChhhhhcccc-cc-
Confidence 45666 5899999999997 889999999999999999999999999 99999999 89999999998643111 10
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChh-hHHHHHHHh
Q 026127 79 RERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDY-FAALFRAKV 157 (243)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~-g~~~l~~~~ 157 (243)
......+ ...+++.+|.++||||||+|||+|+|||++|+++||+||++++ ++|++||.++|+ +|++ ++.++++++
T Consensus 142 ~~~~~~~--~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~-A~f~~pe~~~Gl-~p~~gg~~~L~rli 217 (327)
T PLN02921 142 PDDAGRL--NVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADN-AVFGQTGPKVGS-FDAGYGSSIMARLV 217 (327)
T ss_pred hhHHHHH--HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCC-CEEeCcccccCC-CCCccHHHHHHHHh
Confidence 1111111 1345778899999999999999999999999999999999988 899999999999 6665 467899999
Q ss_pred CCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
| ...+++++++|+.++|+||+++|||++|+|. +++.+++.+++++|+..| +.++..+|+.++..
T Consensus 218 G-~~~A~ellltG~~~~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~--p~al~~~K~~l~~~ 281 (327)
T PLN02921 218 G-QKKAREMWFLARFYTASEALKMGLVNTVVPL-DELEGETVKWCREILRNS--PTAIRVLKSALNAA 281 (327)
T ss_pred C-HHHHHHHHHcCCcCCHHHHHHCCCceEEeCH-HHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHh
Confidence 9 9999999999999999999999999999997 899999999999999998 99999999999764
|
|
| >PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-46 Score=314.37 Aligned_cols=207 Identities=16% Similarity=0.234 Sum_probs=180.6
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||+|+ +.|++|.+|+.+|.+++++++ +++| +||++|.|++||+|+|++++..... . ...
T Consensus 6 i~~~~~~~i~~itlnrp~--~~Nal~~~~~~~L~~~l~~~~--~~vr-~vVl~g~g~~FsaG~Dl~~~~~~~~-~--~~~ 77 (255)
T PRK07112 6 IRVRQQGDVCFLQLHRPE--AQNTINDRLIAECMDVLDRCE--HAAT-IVVLEGLPEVFCFGADFSAIAEKPD-A--GRA 77 (255)
T ss_pred EEEEeeCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHhh--cCce-EEEEEcCCCCcccCcCHHHHhhccc-c--chh
Confidence 567889999999999997 889999999999999999998 4689 9999999999999999998764211 1 111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSAT 161 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~ 161 (243)
.......+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++++.++++++| ..
T Consensus 78 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~Gl-~p~~~~~~l~~~vg-~~ 154 (255)
T PRK07112 78 DLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADET-APFSLSELLFGL-IPACVLPFLIRRIG-TQ 154 (255)
T ss_pred hhhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCC-CEEeCchhhhcc-CcchhhHHHHHHhC-HH
Confidence 1112334567888999999999999999999999999999999999988 899999999999 78877778999999 99
Q ss_pred HHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 026127 162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCP 224 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~ 224 (243)
.+++++++|++++|+||+++||||+|+|+ ++ ..+.+++++++..| +.++..+|+.++.
T Consensus 155 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~--~~~~~~a~~l~~~~--p~a~~~~K~~~~~ 212 (255)
T PRK07112 155 KAHYMTLMTQPVTAQQAFSWGLVDAYGAN-SD--TLLRKHLLRLRCLN--KAAVARYKSYAST 212 (255)
T ss_pred HHHHHHHhCCcccHHHHHHcCCCceecCc-HH--HHHHHHHHHHHhCC--HHHHHHHHHHHHH
Confidence 99999999999999999999999999997 33 25788999999998 8999999999874
|
|
| >PRK12478 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-46 Score=321.32 Aligned_cols=214 Identities=19% Similarity=0.197 Sum_probs=179.1
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhh-HHh---cCCCcc
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAW-AQA---AGSRTG 77 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~-~~~---~~~~~~ 77 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|++|| +|||||.|++||+|+|+++ +.. ....+.
T Consensus 7 v~~~~~~~Va~ItLnrP~--~~NAl~~~~~~eL~~al~~~~~d~~vr-vvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~ 83 (298)
T PRK12478 7 LLYTTAGPVATITLNRPE--QLNTIVPPMPDEIEAAIGLAERDQDIK-VIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDG 83 (298)
T ss_pred EEEeccCCEEEEEecCCc--ccCCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCcccCcCccccccccchhccccc
Confidence 467788999999999997 899999999999999999999999999 9999999999999999985 211 000000
Q ss_pred ---hHHHHH---HHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeecccccc-CcCCChhhH
Q 026127 78 ---ARERLH---YMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDI-GLTLPDYFA 150 (243)
Q Consensus 78 ---~~~~~~---~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~-Gl~~p~~g~ 150 (243)
...... ........++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++ |+ +|++ .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-A~f~~pe~~l~G~-~~~~-~ 160 (298)
T PRK12478 84 RWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDD-AVIGTPYSRMWGA-YLTG-M 160 (298)
T ss_pred ccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCC-cEEeccccccccC-Cchh-H
Confidence 001110 00011234567789999999999999999999999999999999998 8999999997 88 4532 2
Q ss_pred HHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 151 ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 151 ~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
+.+++| ..++++|+++|++++|+||+++|||++|||+ +++.+++.+++++++..| +.+++..|+.++....
T Consensus 161 --~~~~vG-~~~A~~llltg~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~ 231 (298)
T PRK12478 161 --WLYRLS-LAKVKWHSLTGRPLTGVQAAEAELINEAVPF-ERLEARVAEVATELARIP--LSQLQAQKLIVNQAYE 231 (298)
T ss_pred --HHHHhh-HHHHHHHHHcCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHH
Confidence 235799 9999999999999999999999999999998 899999999999999998 9999999999986533
|
|
| >PRK08321 naphthoate synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-46 Score=319.79 Aligned_cols=215 Identities=18% Similarity=0.268 Sum_probs=182.1
Q ss_pred ceeeE--eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-------CcccCCCChhhHHhc
Q 026127 2 CTLEK--HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-------KFFSNGFDLAWAQAA 72 (243)
Q Consensus 2 ~~~~~--~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-------~~F~~G~Dl~~~~~~ 72 (243)
+.+++ +++|++||||||+ +.|++|.+|+.+|.+++++++.|++++ +||++|.| ++||+|+|++++...
T Consensus 25 i~~~~~~~~~va~itlnrP~--~~Nal~~~~~~~l~~al~~~~~d~~vr-vvVltg~g~~~~~~~~~FcaG~Dl~~~~~~ 101 (302)
T PRK08321 25 ITYHRAVDQGTVRIAFDRPE--VRNAFRPHTVDELYRALDHARMSPDVG-CVLLTGNGPSPKDGGWAFCSGGDQRIRGRD 101 (302)
T ss_pred EEEEEecCCCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHHhhCCCcE-EEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence 45666 8899999999997 889999999999999999999999999 99999988 599999999875321
Q ss_pred C----C-CcchHHHHHHH-HHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEe-cCCceeeccccccCcCC
Q 026127 73 G----S-RTGARERLHYM-VESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMR-RDKGVLYMSEVDIGLTL 145 (243)
Q Consensus 73 ~----~-~~~~~~~~~~~-~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~-~~~~~f~~pe~~~Gl~~ 145 (243)
. . ........... .....++...+.++||||||+|||+|+|||++|+++||+|||+ ++ ++|++||+++|+ +
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~-a~f~~pe~~~Gl-~ 179 (302)
T PRK08321 102 GYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREH-ARFKQTDADVGS-F 179 (302)
T ss_pred cccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCC-CEEECCcccccc-C
Confidence 0 0 00000000011 1112356778899999999999999999999999999999999 56 899999999999 5
Q ss_pred Chh-hHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 026127 146 PDY-FAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCP 224 (243)
Q Consensus 146 p~~-g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~ 224 (243)
|++ ++.++++++| ...+++++++|++++|+||+++|||++|+|+ +++.+++.+++++|+..| +.+++.+|+.++.
T Consensus 180 p~~~~~~~L~r~vG-~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~ 255 (302)
T PRK08321 180 DGGYGSAYLARQVG-QKFAREIFFLGRTYSAEEAHDMGAVNAVVPH-AELETEALEWAREINGKS--PTAMRMLKYAFNL 255 (302)
T ss_pred CCchHHHHHHHHhC-HHHHHHHHHcCCccCHHHHHHCCCceEeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHh
Confidence 554 5678999999 8999999999999999999999999999997 889999999999999998 8999999999865
Q ss_pred H
Q 026127 225 D 225 (243)
Q Consensus 225 ~ 225 (243)
.
T Consensus 256 ~ 256 (302)
T PRK08321 256 T 256 (302)
T ss_pred h
Confidence 3
|
|
| >PRK08788 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=314.01 Aligned_cols=214 Identities=21% Similarity=0.248 Sum_probs=177.0
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHh-----cCCCCeEEEEecC-CCcccCCCChhhHHhcCCC
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKA-----EATPGSALITTSH-GKFFSNGFDLAWAQAAGSR 75 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~-----d~~v~~~vvl~g~-g~~F~~G~Dl~~~~~~~~~ 75 (243)
+.++++++|++|+|| |+ +.|++|.+|+.+|.++++++++ |++|| +||++|. |++||+|.|++++.....
T Consensus 19 i~~e~~~~ia~itl~-p~--~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vr-vVVltg~~gk~FcaG~Dl~~~~~~~~- 93 (287)
T PRK08788 19 VYYEEERNVMWMYMR-AQ--PRPCFNLELLDDIMNLQRAIRQRLDDSGLPVD-FWVLASDVPGVFNLGGDLALFAELIR- 93 (287)
T ss_pred EEEEccCCEEEEEEC-CC--CCCCCCHHHHHHHHHHHHHHHhhccCCCCCeE-EEEEEcCCCCceEeCcCHHHHhhhcc-
Confidence 456778999999996 86 8999999999999999999998 89999 9999999 799999999998753211
Q ss_pred cchHHHHHHHHHHHHHHHHHHh---cCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HH
Q 026127 76 TGARERLHYMVESFRPVVAAMM---DLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AA 151 (243)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~---~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~ 151 (243)
..+......+...+.+.+.++. .+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~-a~f~~pev~lGl-~p~~g~~~ 171 (287)
T PRK08788 94 AGDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERG-AKMGFPEILFNL-FPGMGAYS 171 (287)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCC-CEeeCchhhhCc-CCCchHHH
Confidence 1111112222222333333333 799999999999999999999999999999988 899999999999 68776 57
Q ss_pred HHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 026127 152 LFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCP 224 (243)
Q Consensus 152 ~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~ 224 (243)
++++++| ..++++++++|+.++|+||+++||||+++|+ +++.+++.+++++++..|..+.++...|+.++.
T Consensus 172 ~l~~~vG-~~~A~ellltG~~l~A~eA~~~GLV~~vv~~-~el~~~a~~~a~~ia~~~~~~~a~k~~~~~~~~ 242 (287)
T PRK08788 172 FLARRVG-PKLAEELILSGKLYTAEELHDMGLVDVLVED-GQGEAAVRTFIRKSKRKLNGWRAMLRARRRVNP 242 (287)
T ss_pred HHHHHhh-HHHHHHHHHcCCCCCHHHHHHCCCCcEecCc-hHHHHHHHHHHHHHhcCccHHHHHHHHHHhhcc
Confidence 8999999 9999999999999999999999999999998 889999999999999764335566666666543
|
|
| >PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=324.63 Aligned_cols=211 Identities=16% Similarity=0.167 Sum_probs=183.4
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++||||||+ +.|++|.+|+.+|.++++.++.|++|+ +||++|.|++||+|+|+.++..... ......
T Consensus 39 V~~e~~g~v~~ItLNRP~--~lNALs~~m~~~L~~al~~~~~D~~vr-vVVl~G~GkaFcAGgDl~~l~~~~~-~~~~~~ 114 (401)
T PLN02157 39 VLVEGSGCSRTAILNRPP--ALNALTTHMGYRLQKLYKNWEEDPNIG-FVMMKGSGRAFCAGGDIVSLYHLRK-RGSPDA 114 (401)
T ss_pred eEEEEECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHhhCCCCe-EEEEECCCCCccCCcCHHHHHhhcc-ccchHH
Confidence 467889999999999997 899999999999999999999999999 9999999999999999998864221 111122
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+....+.+...|.++|||+||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus 115 ~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~-a~fa~PE~~iGl-~Pd~G~s~~L~rl~G-~ 191 (401)
T PLN02157 115 IREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDR-TIFATPETIIGF-HPDAGASFNLSHLPG-R 191 (401)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCC-CEEEChhhhcCC-CCCccHHHHHHHhhh-H
Confidence 2334444455778899999999999999999999999999999999998 899999999999 78877 568999998 5
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCP 224 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~ 224 (243)
.+++|++||+.++|+||+++||+++++|+ +++ +.+.+++++++..+ +.++..+|+.++.
T Consensus 192 -~a~~L~LTG~~i~A~eA~~~GLv~~vVp~-~~l-~~~~~~~~~i~~~~--p~av~~~k~~~~~ 250 (401)
T PLN02157 192 -LGEYLGLTGLKLSGAEMLACGLATHYIRS-EEI-PVMEEQLKKLLTDD--PSVVESCLEKCAE 250 (401)
T ss_pred -HHHHHHHcCCcCCHHHHHHcCCceEEeCH-hHH-HHHHHHHHHHHcCC--HHHHHHHHHHHhc
Confidence 68999999999999999999999999998 778 67789999998876 7889999988764
|
|
| >PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-46 Score=323.27 Aligned_cols=213 Identities=19% Similarity=0.228 Sum_probs=184.6
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|++|| +||+||.| ++||+|.|++++..... .....
T Consensus 5 v~~~~~~~v~~itLnrP~--~~Nal~~~m~~~L~~~l~~~~~d~~vr-vvVltg~g~~~F~aG~Dl~~~~~~~~-~~~~~ 80 (342)
T PRK05617 5 VLAEVEGGVGVITLNRPK--ALNALSLEMIRAIDAALDAWEDDDAVA-AVVIEGAGERGFCAGGDIRALYEAAR-AGDPL 80 (342)
T ss_pred EEEEEECCEEEEEECCCc--cccCCCHHHHHHHHHHHHHHhhCCCeE-EEEEEcCCCCceeCCcCHHHHHhhhc-cCCch
Confidence 577889999999999997 899999999999999999999999999 99999999 99999999998754211 11011
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhH-HHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFA-ALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~-~~l~~~~g~ 159 (243)
....+.....+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+ .+++++.|
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~-a~f~~pe~~lGl-~P~~g~~~~L~r~~g- 157 (342)
T PRK05617 81 AADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTER-TKMAMPETGIGF-FPDVGGTYFLSRAPG- 157 (342)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCC-CEeeCCccccCc-CCCccceeEehhccc-
Confidence 11123344457888999999999999999999999999999999999988 899999999999 788775 57888755
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHH------------------------------------------
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEA------------------------------------------ 197 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~------------------------------------------ 197 (243)
..+++++++|+.++|+||+++|||++|+|+ +++.+.
T Consensus 158 -~~a~~llltG~~i~A~eA~~~GLv~~vv~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 235 (342)
T PRK05617 158 -ALGTYLALTGARISAADALYAGLADHFVPS-ADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDEC 235 (342)
T ss_pred -HHHHHHHHcCCCCCHHHHHHcCCcceecCH-HHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHH
Confidence 478999999999999999999999999997 778776
Q ss_pred --------------------HHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 198 --------------------SMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 198 --------------------a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
|.+++++|+++| |.++..+|+.++..
T Consensus 236 ~~~~~~~~~~~~l~~~~~~~a~~~a~~i~~~s--p~a~~~~k~~l~~~ 281 (342)
T PRK05617 236 FAGDTVEDIIAALEADGGEFAAKTADTLRSRS--PTSLKVTLEQLRRA 281 (342)
T ss_pred hCCCCHHHHHHHHHhccHHHHHHHHHHHHhCC--cHHHHHHHHHHHHh
Confidence 889999999998 99999999998754
|
|
| >PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-45 Score=320.36 Aligned_cols=184 Identities=18% Similarity=0.227 Sum_probs=159.3
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|++|| +||++|.|++||+|+|++++..... . ...
T Consensus 13 v~~~~~~~v~~ItLnrP~--~~Nal~~~m~~eL~~al~~~~~d~~vr-vvVl~g~g~~FcaG~Dl~~~~~~~~-~--~~~ 86 (379)
T PLN02874 13 VLGEEKGRVRVITLNRPR--QLNVISLSVVSLLAEFLEQWEKDDSVE-LIIIKGAGRAFSAGGDLKMFYDGRE-S--DDS 86 (379)
T ss_pred eEEEEECCEEEEEECCCc--cccCCCHHHHHHHHHHHHHHhhCCCeE-EEEEECCCCCccCccCHHHHHhhcc-c--chH
Confidence 567788999999999997 889999999999999999999999999 9999999999999999998754211 1 111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
........+.+..+|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus 87 ~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~iGl-~p~~g~~~~L~rl~g-~ 163 (379)
T PLN02874 87 CLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEK-TVFATPEASVGF-HTDCGFSYILSRLPG-H 163 (379)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCC-eEEeccccccCc-CCChhHHHHHHhhhH-H
Confidence 1223334455678899999999999999999999999999999999988 899999999999 68776 467888877 5
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAE 196 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~ 196 (243)
.+++|++||++++|+||+++|||++|||+ +++.+
T Consensus 164 -~a~~l~ltG~~i~a~eA~~~GLv~~vv~~-~~l~~ 197 (379)
T PLN02874 164 -LGEYLALTGARLNGKEMVACGLATHFVPS-EKLPE 197 (379)
T ss_pred -HHHHHHHcCCcccHHHHHHcCCccEEeCH-HHHHH
Confidence 68899999999999999999999999997 67765
|
|
| >TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-44 Score=306.18 Aligned_cols=206 Identities=15% Similarity=0.166 Sum_probs=180.9
Q ss_pred EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchHHHHHHHHHH
Q 026127 10 VFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGARERLHYMVES 88 (243)
Q Consensus 10 v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (243)
+++|+||||+ +.|++|.+|+.+|.+++++++.|++|+ +||+||.| ++||+|.|++++..... .. ......+.+.
T Consensus 38 ~A~ItLNRP~--k~NAls~~ml~eL~~al~~~~~D~dVr-vVVLTG~G~kaFCAG~DLke~~~~~~-~~-~~~~~~~~~~ 112 (360)
T TIGR03200 38 NAWIILDNPK--QYNSYTTDMVKAIILAFRRASSDRDVV-AVVFTAVGDKAFCTGGNTKEYAEYYA-GN-PQEYRQYMRL 112 (360)
T ss_pred EEEEEECCCC--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEEcCCCCcccCCcCHHHHhhhcc-cC-hhHHHHHHHH
Confidence 4559999997 889999999999999999999999999 99999999 79999999998765211 11 2233455666
Q ss_pred HHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCHHHHHHHH
Q 026127 89 FRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSATARRDVL 167 (243)
Q Consensus 89 ~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~~a~~l~ 167 (243)
+++++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| ..++++++
T Consensus 113 ~~~l~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~-A~Fg~PE~rlGl-~P~~Ggt~rLprlvG-~~rA~~ll 189 (360)
T TIGR03200 113 FNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDL-ANFGQAGPKHGS-APIGGATDFLPLMIG-CEQAMVSG 189 (360)
T ss_pred HHHHHHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCC-CEEeCchhccCC-CCCccHHHHHHHhhC-HHHHHHHH
Confidence 778899999999999999999999999999999999999988 899999999999 68776 569999999 89999999
Q ss_pred hcCcCCCHHHHHHcCcchhccCCHhHH------------HHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 026127 168 LRAKKIKGEEALRMGLVEAAYDSEEQV------------AEASMRLAKQLAGRKWAGEVYAEIRKSLCP 224 (243)
Q Consensus 168 l~g~~~~a~eA~~~Glv~~v~~~~~~l------------~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~ 224 (243)
++|++++|+||+++|||++|+|+ +++ ++.+.++++.+...+....+....|.++..
T Consensus 190 ltGe~~sA~EA~~~GLVd~VVp~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 257 (360)
T TIGR03200 190 TLCEPWSAHKAKRLGIIMDVVPA-LKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQ 257 (360)
T ss_pred HhCCcCcHHHHHHcCChheecCc-hhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhc
Confidence 99999999999999999999998 788 888889999999887555578878877765
|
Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=291.04 Aligned_cols=218 Identities=21% Similarity=0.320 Sum_probs=196.1
Q ss_pred eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcC--CCcch-----H
Q 026127 7 HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAG--SRTGA-----R 79 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~--~~~~~-----~ 79 (243)
+.-|.++.||||. +.|++|..|+.|+.++++.++.||++| +||++|.|+.||+|+|++.+.... ..+.+ .
T Consensus 29 ~~~V~hv~lnRPs--k~Nal~~~~w~E~~~cf~~l~~dpdcr-~iilsg~GKhFcaGIDl~~~~~~~~~~~~~dd~aR~g 105 (292)
T KOG1681|consen 29 QPFVYHVQLNRPS--KLNALNKVFWREFKECFDSLDRDPDCR-AIILSGAGKHFCAGIDLNDMASDRILQPEGDDVARKG 105 (292)
T ss_pred CCeEEEEEecCcc--hhhhhhHHHHHHHHHHHHhhccCCCce-EEEEecCCcceecccCcchhhhhhccccccchHhhhh
Confidence 4579999999998 999999999999999999999999999 999999999999999988665431 11111 3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhH-HHHHHHhC
Q 026127 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFA-ALFRAKVG 158 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~-~~l~~~~g 158 (243)
..+++....+++.+..|.+||||||++|||+|+|+|..|..+||+|||++| ++|+.-|+.+|+ ..+.|+ .+|+..+|
T Consensus 106 ~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqD-AffsvkEVDvgl-aADvGTL~RlpkvVG 183 (292)
T KOG1681|consen 106 RSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQD-AFFSVKEVDVGL-AADVGTLNRLPKVVG 183 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeeccc-ceeeeeeeeeeh-hhchhhHhhhhHHhc
Confidence 456778888999999999999999999999999999999999999999999 899999999999 788886 69999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhc
Q 026127 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLG 231 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~ 231 (243)
....++++.+|++.|+|.||++.|||++|+|+.++++..+..+|+.|+.++ |.+++.+|..+........+
T Consensus 184 n~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KS--pvaVqgTK~~L~ysrehsv~ 254 (292)
T KOG1681|consen 184 NQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKS--PVAVQGTKENLLYSREHSVE 254 (292)
T ss_pred chHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCC--ceeeechHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999999999999999998 88888888887665544443
|
|
| >PLN02988 3-hydroxyisobutyryl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=311.93 Aligned_cols=210 Identities=19% Similarity=0.224 Sum_probs=177.4
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|++|+ +||++|.|++||+|+|++++..... ......
T Consensus 11 v~~~~~~~i~~ItLnRP~--~lNALs~~m~~~L~~al~~~~~d~~v~-~VVl~G~G~~FcAGgDl~~l~~~~~-~~~~~~ 86 (381)
T PLN02988 11 VLVEEKSSVRILTLNRPK--QLNALSFHMISRLLQLFLAFEEDPSVK-LVILKGHGRAFCAGGDVAAVVRDIE-QGNWRL 86 (381)
T ss_pred eEEEEECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHHhCCCee-EEEEECCCCCcccCcCHHHHHhhhc-ccchhH
Confidence 467788999999999997 889999999999999999999999999 9999999999999999998753211 111111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...++...+.+...|.++|||+||++||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus 87 ~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~-a~f~mPE~~iGl-~Pd~G~s~~L~rl~G-~ 163 (381)
T PLN02988 87 GANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATEN-TVFAMPETALGL-FPDVGASYFLSRLPG-F 163 (381)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCC-cEEeChhhhcCc-CCCccHHHHHHHHHH-H
Confidence 1222333344667889999999999999999999999999999999988 899999999999 78887 468888888 5
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHh
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLC 223 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~ 223 (243)
.+++|++||++++|++|+++||+++++|+ +++.+.+.+++ +++..+ +.++..+|+.+.
T Consensus 164 -~~~~l~LTG~~i~a~eA~~~GLv~~vv~~-~~l~~~~~~la-~~~~~~--p~~~~~~~~~~~ 221 (381)
T PLN02988 164 -FGEYVGLTGARLDGAEMLACGLATHFVPS-TRLTALEADLC-RIGSND--PTFASTILDAYT 221 (381)
T ss_pred -HHHHHHHcCCCCCHHHHHHcCCceEecCH-hHHHHHHHHHH-HhhccC--HHHHHHHHHHhh
Confidence 57899999999999999999999999998 88999988888 776665 666777777665
|
|
| >TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-43 Score=319.27 Aligned_cols=210 Identities=17% Similarity=0.157 Sum_probs=182.4
Q ss_pred eeeEeCcEEEEEEcCCCCCCC-------------CCCCHHHHHHHHHHHHHHHh-cCCCCeEEEEecCCCc-ccCCCChh
Q 026127 3 TLEKHGDVFVLTLTGSSDVDE-------------HRFGPPAIDSILSAIAKAKA-EATPGSALITTSHGKF-FSNGFDLA 67 (243)
Q Consensus 3 ~~~~~~~v~~i~ln~p~~~~~-------------N~l~~~~~~~l~~~l~~~~~-d~~v~~~vvl~g~g~~-F~~G~Dl~ 67 (243)
.++++++|++||||||+ +. |++|.+|+++|.++++.++. |++|| +||+||.|+. ||+|.|+.
T Consensus 261 ~~~~~~~va~itlnrP~--~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr-~vVl~g~G~~~F~aG~Dl~ 337 (546)
T TIGR03222 261 AIDRAARTATITLKGPK--AAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIG-LWVFRTQGDAELVLAADAL 337 (546)
T ss_pred EEeccCCEEEEEecChh--hcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeE-EEEEEcCCCCceecCcCcc
Confidence 45668999999999997 88 99999999999999999984 59999 9999999987 99999998
Q ss_pred hHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEE-ccccchHH-HHHHHhcceeEE-------ecCCceeeccc
Q 026127 68 WAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAV-NGHAAAAG-LTLALSHDYVIM-------RRDKGVLYMSE 138 (243)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav-~G~~~G~G-~~la~~~D~~ia-------~~~~~~f~~pe 138 (243)
.... . + ...........++++.+|.++||||||+| ||+|+||| ++|+++||+||+ +++ ++|++||
T Consensus 338 ~~~~--~-~--~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~-a~f~~~e 411 (546)
T TIGR03222 338 LEAH--K-D--HWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPE-PAITLSE 411 (546)
T ss_pred cccc--c-c--chhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCC-CEEeCCc
Confidence 4221 1 1 11112223344668889999999999999 89999999 999999999999 888 8999999
Q ss_pred cccCcCCChhh-HHHHHHHh-CCHHHH--HHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhH
Q 026127 139 VDIGLTLPDYF-AALFRAKV-GSATAR--RDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEV 214 (243)
Q Consensus 139 ~~~Gl~~p~~g-~~~l~~~~-g~~~~a--~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a 214 (243)
+++|+ +|++| +++|++++ | ..++ ++++++|+.++|+||+++|||++|+++ +++.+++.+++++++.+| |.+
T Consensus 412 ~~lGl-~p~~gg~~~L~~~v~G-~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--p~a 486 (546)
T TIGR03222 412 LNFGL-YPMVNGLSRLATRFYA-EPAPVAAVRDKIGQALDAEEAERLGLVTAAPDD-IDWEDEIRIALEERASFS--PDA 486 (546)
T ss_pred ccccc-CCCcCcHHHHHHHhcC-chhHHHHHHHHhCCCCCHHHHHHcCCcccccCc-hHHHHHHHHHHHHHHhcC--HHH
Confidence 99999 78876 56899998 8 7777 559999999999999999999999998 889999999999999998 999
Q ss_pred HHHHHHHHhHHH
Q 026127 215 YAEIRKSLCPDL 226 (243)
Q Consensus 215 ~~~~k~~l~~~~ 226 (243)
++.+|+.++...
T Consensus 487 ~~~~K~~l~~~~ 498 (546)
T TIGR03222 487 LTGLEANLRFAG 498 (546)
T ss_pred HHHHHHHHhhcC
Confidence 999999987543
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. |
| >PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-43 Score=319.38 Aligned_cols=210 Identities=14% Similarity=0.122 Sum_probs=181.5
Q ss_pred eeeEeCcEEEEEEcCCCCCCC-------------CCCCHHHHHHHHHHHHHHHh-cCCCCeEEEEecCC-CcccCCCChh
Q 026127 3 TLEKHGDVFVLTLTGSSDVDE-------------HRFGPPAIDSILSAIAKAKA-EATPGSALITTSHG-KFFSNGFDLA 67 (243)
Q Consensus 3 ~~~~~~~v~~i~ln~p~~~~~-------------N~l~~~~~~~l~~~l~~~~~-d~~v~~~vvl~g~g-~~F~~G~Dl~ 67 (243)
.++++++|++||||||+ +. |++|.+|+.+|.+++++++. |++|| +||+||.| +.||+|.|++
T Consensus 265 ~~~~~~~va~itlnrP~--~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr-~vVltg~G~~~F~aG~Dl~ 341 (550)
T PRK08184 265 EIDRAARTATITVKAPT--AAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIG-TWVLKTEGDAAAVLAADAT 341 (550)
T ss_pred EEEccCCEEEEEEeCcc--cccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeE-EEEEEcCCCCcEEeCCChh
Confidence 34556899999999997 77 68999999999999999996 79999 99999999 5999999987
Q ss_pred hHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEc-cccchHH-HHHHHhcceeEEe-------cCCceeeccc
Q 026127 68 WAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVN-GHAAAAG-LTLALSHDYVIMR-------RDKGVLYMSE 138 (243)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~-G~~~G~G-~~la~~~D~~ia~-------~~~~~f~~pe 138 (243)
.... . + ..........+++++.+|.++||||||+|| |+|+||| ++|+++||+||++ ++ ++|++||
T Consensus 342 ~~~~--~-~--~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~-a~f~~pe 415 (550)
T PRK08184 342 LLAH--K-D--HWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPA-PAITLSA 415 (550)
T ss_pred hhcc--c-c--hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCC-CEEECcc
Confidence 3221 1 1 111122234456688899999999999997 9999999 9999999999999 77 8999999
Q ss_pred cccCcCCChhh-HHHHHHH-hCCHHHHHHH--HhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhH
Q 026127 139 VDIGLTLPDYF-AALFRAK-VGSATARRDV--LLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEV 214 (243)
Q Consensus 139 ~~~Gl~~p~~g-~~~l~~~-~g~~~~a~~l--~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a 214 (243)
+++|+ +|++| +++|+++ +| ..+++++ +++|++++|+||+++|||++|+|+ +++.+++.+++++++..| |.+
T Consensus 416 ~~~Gl-~p~~gg~~~L~r~~vG-~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~ia~~~--p~a 490 (550)
T PRK08184 416 LNFGL-YPMVNGLSRLARRFYG-EPDPLAAVRAKIGQPLDADAAEELGLVTAAPDD-IDWEDEVRIALEERASLS--PDA 490 (550)
T ss_pred ccccC-CCCCCcHHHhHHHhcC-hHHHHHHHHHHhCCcCCHHHHHHcCCcccccCh-HHHHHHHHHHHHHHHhCC--HHH
Confidence 99999 78875 6799998 69 8888887 589999999999999999999998 899999999999999998 999
Q ss_pred HHHHHHHHhHHH
Q 026127 215 YAEIRKSLCPDL 226 (243)
Q Consensus 215 ~~~~k~~l~~~~ 226 (243)
+..+|+.++...
T Consensus 491 ~~~~K~~l~~~~ 502 (550)
T PRK08184 491 LTGMEANLRFAG 502 (550)
T ss_pred HHHHHHHHHhcC
Confidence 999999997653
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=326.75 Aligned_cols=198 Identities=23% Similarity=0.356 Sum_probs=176.6
Q ss_pred ceee-EeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLE-KHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~-~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++ ++++|++||||||+ +.|++|.+|+.+|.++++.++.|+++| +|||||.|++||+|+|++++..... .+..
T Consensus 8 i~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~~~--~~~~ 82 (715)
T PRK11730 8 LQVDWLEDGIAELVFDAPG--SVNKLDRATLASLGEALDALEAQSDLK-GLLLTSAKDAFIVGADITEFLSLFA--APEE 82 (715)
T ss_pred EEEEEcCCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHhcCCCcE-EEEEECCCCccccCcCHHHHhhhcc--CCHH
Confidence 3455 37899999999997 899999999999999999999999999 9999999999999999998754211 1122
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 83 ~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~-a~f~~pe~~lGl-~p~~g~~~~L~rlvG- 159 (715)
T PRK11730 83 ELSQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPD-ARIGLPETKLGI-MPGFGGTVRLPRLIG- 159 (715)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCC-CEEeCchhhcCC-CCCchHHHHHHHhcC-
Confidence 23445566778899999999999999999999999999999999999988 899999999999 78876 568999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcC
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~ 208 (243)
...+++++++|++++|+||+++||||+|+|+ +++.+++.++|++++.+
T Consensus 160 ~~~A~~llltG~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~ 207 (715)
T PRK11730 160 ADNALEWIAAGKDVRAEDALKVGAVDAVVAP-EKLQEAALALLKQAIAG 207 (715)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCH-HHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999998 88999999999999865
|
|
| >PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=300.49 Aligned_cols=196 Identities=17% Similarity=0.196 Sum_probs=169.8
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.+++++++++||||||+ +.|++|.+|+.+|.++++.++.|++|+ +||++|.|++||+|+|++++..... ..+...
T Consensus 44 v~~e~~~~~~~ItLNRP~--~lNALs~~m~~eL~~al~~~~~D~~vr-vVVL~G~GkaFcAGgDl~~l~~~~~-~~~~~~ 119 (407)
T PLN02851 44 VLVEGRAKSRAAILNRPS--SLNALTIPMVARLKRLYESWEENPDIG-FVLMKGSGRAFCSGADVVSLYHLIN-EGNVEE 119 (407)
T ss_pred eEEEEECCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCccCCcCHHHHHhhcc-ccchHH
Confidence 457788999999999997 899999999999999999999999999 9999999999999999998865321 111233
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhH-HHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFA-ALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~-~~l~~~~g~~ 160 (243)
...++...+++...|.++|||+||++||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+ +++++..| .
T Consensus 120 ~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~-a~famPE~~iGl-~PdvG~s~~L~rl~g-~ 196 (407)
T PLN02851 120 CKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDK-TVFAHPEVQMGF-HPDAGASYYLSRLPG-Y 196 (407)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCC-ceEecchhccCC-CCCccHHHHHHHhcC-H
Confidence 4556667788888999999999999999999999999999999999988 899999999999 798875 67888888 5
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhc
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAG 207 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~ 207 (243)
.+.++++||++++|++|+++||+++++++ +++ +.+.+.+.++..
T Consensus 197 -~g~~L~LTG~~i~a~eA~~~GLa~~~v~~-~~l-~~l~~~l~~~~~ 240 (407)
T PLN02851 197 -LGEYLALTGQKLNGVEMIACGLATHYCLN-ARL-PLIEERLGKLLT 240 (407)
T ss_pred -HHHHHHHhCCcCCHHHHHHCCCceeecCH-hhH-HHHHHHHHhhcc
Confidence 48899999999999999999999999998 666 556666655544
|
|
| >cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=275.05 Aligned_cols=194 Identities=30% Similarity=0.486 Sum_probs=176.6
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||+|+ +.|++|.+++++|.++++.++.|++++ +||++|.++.||+|.|++++..... . ...
T Consensus 1 i~~~~~~~i~~i~l~~~~--~~N~~~~~~~~~l~~~l~~~~~d~~~~-~vvl~~~~~~Fs~G~dl~~~~~~~~-~--~~~ 74 (195)
T cd06558 1 VLVERDGGVATITLNRPE--KRNALSLEMLDELAAALDEAEADPDVR-VVVLTGAGKAFCAGADLKELAALSD-A--GEE 74 (195)
T ss_pred CEEEEECCEEEEEECCcc--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCceEeCcCHHHHhcccc-c--chh
Confidence 467889999999999996 699999999999999999999999999 9999999999999999999876432 1 113
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChh-hHHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDY-FAALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~-g~~~l~~~~g~~ 160 (243)
..++.+.+++++.++.++|||||+++||+|.|+|++++++||+||++++ ++|++||.++|+ +|+. +..++.+++| .
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~-~~~~~pe~~~G~-~p~~g~~~~l~~~~g-~ 151 (195)
T cd06558 75 ARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAED-AKFGLPEVKLGL-VPGGGGTQRLPRLVG-P 151 (195)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCC-CEEechhhhcCC-CCCCcHHHHHHHHhC-H
Confidence 5678888999999999999999999999999999999999999999998 899999999999 5554 4679999999 8
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l 205 (243)
..+++++++|+.++++||+++||+++++++ +++.+++.++++++
T Consensus 152 ~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~-~~l~~~a~~~a~~~ 195 (195)
T cd06558 152 ARARELLLTGRRISAEEALELGLVDEVVPD-EELLAAALELARRL 195 (195)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCCCeecCh-hHHHHHHHHHHhhC
Confidence 999999999999999999999999999998 88999999998763
|
This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=319.38 Aligned_cols=192 Identities=23% Similarity=0.388 Sum_probs=170.0
Q ss_pred eeeE-eCcEEEEEEcCC-CCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC-CCcccCCCChhhHHhcCCCcchH
Q 026127 3 TLEK-HGDVFVLTLTGS-SDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH-GKFFSNGFDLAWAQAAGSRTGAR 79 (243)
Q Consensus 3 ~~~~-~~~v~~i~ln~p-~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~-g~~F~~G~Dl~~~~~~~~~~~~~ 79 (243)
.+++ +++|++|+|||| + +.|++|.+|+.+|.+++++++.|+++| +||++|. |++||+|+|++++..... .
T Consensus 8 ~~~~~~~~va~itlnrp~~--~~Nal~~~~~~~L~~~l~~~~~d~~vr-~vVl~~~~~~~F~aG~Dl~~~~~~~~----~ 80 (708)
T PRK11154 8 TLNVREDNIAVITIDVPGE--KMNTLKAEFAEQVRAILKQLREDKELK-GVVFISGKPDNFIAGADINMLAACKT----A 80 (708)
T ss_pred EEEEcCCCEEEEEECCCCC--CCcCCCHHHHHHHHHHHHHHHhCCCce-EEEEecCCCCCcccCcChHHhhccCC----H
Confidence 4566 689999999999 6 789999999999999999999999999 8888876 489999999998754211 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCC-ceeeccccccCcCCChhh-HHHHHHHh
Q 026127 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDK-GVLYMSEVDIGLTLPDYF-AALFRAKV 157 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~-~~f~~pe~~~Gl~~p~~g-~~~l~~~~ 157 (243)
.....+...++.++.+|.++||||||+|||+|+|||++|+++||+||+++++ ++|++||+++|+ +|++| +++|++++
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl-~p~~gg~~~L~r~v 159 (708)
T PRK11154 81 QEAEALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGL-LPGSGGTQRLPRLI 159 (708)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCC-CCCccHHhHHHhhc
Confidence 2223344556778899999999999999999999999999999999999873 589999999999 78876 57999999
Q ss_pred CCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHH
Q 026127 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQ 204 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~ 204 (243)
| ...+++|+++|++++|+||+++||||+++++ +++.+++.++|++
T Consensus 160 G-~~~A~~llltG~~i~a~eA~~~GLv~~vv~~-~~l~~~a~~~A~~ 204 (708)
T PRK11154 160 G-VSTALDMILTGKQLRAKQALKLGLVDDVVPH-SILLEVAVELAKK 204 (708)
T ss_pred C-HHHHHHHHHhCCcCCHHHHHHCCCCcEecCh-HHHHHHHHHHHHh
Confidence 9 9999999999999999999999999999998 8899999999988
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=317.23 Aligned_cols=189 Identities=22% Similarity=0.376 Sum_probs=167.9
Q ss_pred eEeCcEEEEEEcCC-CCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEE-EecCCCcccCCCChhhHHhcCCCcchHHHH
Q 026127 5 EKHGDVFVLTLTGS-SDVDEHRFGPPAIDSILSAIAKAKAEATPGSALI-TTSHGKFFSNGFDLAWAQAAGSRTGARERL 82 (243)
Q Consensus 5 ~~~~~v~~i~ln~p-~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vv-l~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 82 (243)
..+++|++|||||| + +.|++|.+|+.+|.+++++++.|++|| +|| ++|.|++||+|+|++++..... ....
T Consensus 6 ~~~~~Va~itlnrp~~--~~Nal~~~~~~eL~~~l~~~~~d~~vr-~VVl~~g~g~~FcaG~Dl~~~~~~~~----~~~~ 78 (699)
T TIGR02440 6 VREDGIAILTIDVPGE--KMNTLKAEFADQVSEILSQLKRDKSIR-GLVLVSGKPDNFIAGADISMLAACQT----AGEA 78 (699)
T ss_pred EcCCCEEEEEECCCCC--CCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEEeCCCCceeeccCchhhhccCC----hhHH
Confidence 45689999999999 6 789999999999999999999999999 666 5788999999999998754211 2223
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecC-CceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 83 HYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRD-KGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~-~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
..+...+++++.++.++||||||+|||+|+|||++|+++||+|||+++ +++|++||+++|+ +|++| ++++++++| .
T Consensus 79 ~~~~~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl-~p~~g~~~~L~r~vG-~ 156 (699)
T TIGR02440 79 KALAQQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGL-LPGSGGTQRLPRLIG-V 156 (699)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccC-CCCccHHHHHHHhcC-H
Confidence 344556678889999999999999999999999999999999999986 3699999999999 78876 579999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAK 203 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~ 203 (243)
..+++++++|+.++|+||+++||||+|+|+ +++.+++.++|+
T Consensus 157 ~~A~~llltG~~~~a~eA~~~GLV~~vv~~-~~l~~~a~~~A~ 198 (699)
T TIGR02440 157 STALDMILTGKQLRAKQALKLGLVDDVVPQ-SILLDTAVEMAL 198 (699)
T ss_pred HHHHHHHHcCCcCCHHHHHhCCCCcEecCh-hHHHHHHHHHHH
Confidence 999999999999999999999999999998 889999999998
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=313.78 Aligned_cols=197 Identities=22% Similarity=0.327 Sum_probs=174.6
Q ss_pred ceeeE-eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++. +++|++|+||+|+ +.|++|.+|+.+|.+++++++.|+++| +||++|.|++||+|.|++++..... .. ..
T Consensus 8 i~~~~~~~gva~Itlnrp~--~~Nal~~~~~~eL~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~-~~ 82 (714)
T TIGR02437 8 IQVTALEDGIAELKFDAPG--SVNKFDRATLASLDQALDAIKAQSSLK-GVILTSGKDAFIVGADITEFLGLFA-LP-DA 82 (714)
T ss_pred EEEEEccCCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCccccCcCHHHHhhccc-CC-HH
Confidence 34553 6899999999997 899999999999999999999999999 9999999999999999999864211 01 22
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+....++++.+|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+ +|++| ++++++++|
T Consensus 83 ~~~~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~-a~fglPEv~lGl-~Pg~Ggt~rL~rliG- 159 (714)
T TIGR02437 83 ELIQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDT-AKIGLPETKLGI-MPGFGGTVRLPRVIG- 159 (714)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCC-CEEecchhhcCC-CCCccHHHHHHHHhC-
Confidence 23344556678899999999999999999999999999999999999987 899999999999 79887 579999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhc
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAG 207 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~ 207 (243)
...+++++++|++++|+||+++||||+++++ +++.+.+.++++++..
T Consensus 160 ~~~A~~llltG~~~~A~eA~~~GLvd~vv~~-~~l~~~a~~~a~~~~~ 206 (714)
T TIGR02437 160 ADNALEWIASGKENRAEDALKVGAVDAVVTA-DKLGAAALQLLKDAIN 206 (714)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCcEeeCh-hHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999998 7899999999988554
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=313.40 Aligned_cols=199 Identities=24% Similarity=0.359 Sum_probs=173.4
Q ss_pred ceeeEeCcEEEEEEcCCCCCC-CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVD-EHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~-~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|+||+|+ + .|++|.+++.+|.+++++++.|++||++||+||.|++||+|.|++++..... ..
T Consensus 15 ~~~~~~~gVa~itlnrP~--~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~----~~ 88 (737)
T TIGR02441 15 RHYEVKGDVAVVKIDSPN--SKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKT----AQ 88 (737)
T ss_pred EEEEEECCEEEEEEcCCC--CCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCC----hH
Confidence 467789999999999993 3 7999999999999999999999999945677999999999999999864211 23
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCC-ceeeccccccCcCCChhh-HHHHHHHhC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDK-GVLYMSEVDIGLTLPDYF-AALFRAKVG 158 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~-~~f~~pe~~~Gl~~p~~g-~~~l~~~~g 158 (243)
....+...+++++.+|.++||||||+|||+|+|||++|+++||+|||++++ ++|++||+++|+ +|++| +++|++++|
T Consensus 89 ~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl-~Pg~Ggt~rLprliG 167 (737)
T TIGR02441 89 EVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGL-LPGAGGTQRLPKLTG 167 (737)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCC-CCCccHhhhHHHhhC
Confidence 334555667889999999999999999999999999999999999999883 589999999999 78886 569999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCH------------hHHHHHHHHHHHHHhcC
Q 026127 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSE------------EQVAEASMRLAKQLAGR 208 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~------------~~l~~~a~~~a~~l~~~ 208 (243)
...+++++++|++++|+||+++||||+|+++. +++.+.|.+++++++..
T Consensus 168 -~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~ 228 (737)
T TIGR02441 168 -VPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANG 228 (737)
T ss_pred -HHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcc
Confidence 89999999999999999999999999999851 46788888888887653
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=268.71 Aligned_cols=221 Identities=20% Similarity=0.302 Sum_probs=195.9
Q ss_pred ceeeEeCcEEEEEEc-CCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcch--
Q 026127 2 CTLEKHGDVFVLTLT-GSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGA-- 78 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln-~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~-- 78 (243)
+.++++|++.+|.+| +|+ +.|+++.++..++..+++....|+++. .++++|.|++||+|.|+..+....+.+..
T Consensus 9 ~vv~~~~g~~~I~~~~~Pk--k~Nal~~e~y~~i~~al~~a~~dds~~-~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~ 85 (266)
T KOG0016|consen 9 IVVTRENGPFFIALNIRPK--KKNALNREDYVYIQRALEEANDDDSVS-ITVLSSNGSYFCSGLDFSPFAKALDDDANEE 85 (266)
T ss_pred eEEEecCCcEEEEecCCCc--ccccccHHHHHHHHHHHHHhhcccceE-EEEEecCccEEeeccccchhhhcCCCccccc
Confidence 457889999999999 997 899999999999999999999999987 99999999999999999988775431111
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhH-HHHHHHh
Q 026127 79 RERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFA-ALFRAKV 157 (243)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~-~~l~~~~ 157 (243)
..........+..++.++..+|||+||.|||+++|.|..+...||+++|+|+ ++|..|+..+|. .|.+++ ++++++|
T Consensus 86 ~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dk-a~F~TPfa~lGq-~PEG~Ss~t~p~im 163 (266)
T KOG0016|consen 86 SDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDK-AWFQTPFAKLGQ-SPEGCSSVTLPKIM 163 (266)
T ss_pred chhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccc-eEEeccchhcCC-CCCcceeeeehHhh
Confidence 1122233344455889999999999999999999999999999999999965 899999999999 788885 6999999
Q ss_pred CCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhc
Q 026127 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLG 231 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~ 231 (243)
| ...|.+|++.|++++|+||.+.|||++|++. +++.+.++..++++++.+ |.++...|++++....+.+.
T Consensus 164 G-~~~A~E~ll~~~kltA~Ea~~~glVskif~~-~tf~~~v~~~ikq~s~l~--p~sl~~~K~L~rs~~k~~l~ 233 (266)
T KOG0016|consen 164 G-SASANEMLLFGEKLTAQEACEKGLVSKIFPA-ETFNEEVLKKIKQYSKLS--PESLLGMKKLLRSNIKEELI 233 (266)
T ss_pred c-hhhHHHHHHhCCcccHHHHHhcCchhhhcCh-HHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHH
Confidence 9 8999999999999999999999999999999 899999999999999987 99999999999887777665
|
|
| >TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=301.46 Aligned_cols=219 Identities=18% Similarity=0.206 Sum_probs=176.9
Q ss_pred ceeeEeCcEEEEEEcCCC-----C---CCCCCCCHHHHHHHHHHHHHHH-hcCCCCeEEEEecC-CCcccCCCChhhHHh
Q 026127 2 CTLEKHGDVFVLTLTGSS-----D---VDEHRFGPPAIDSILSAIAKAK-AEATPGSALITTSH-GKFFSNGFDLAWAQA 71 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~-----~---~~~N~l~~~~~~~l~~~l~~~~-~d~~v~~~vvl~g~-g~~F~~G~Dl~~~~~ 71 (243)
+.++++++|++|+||||+ + ++.|++|.+|+.+|.+++++++ .|+++| +||+||. |++||+|.|++++..
T Consensus 13 v~~~~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vR-vVVLtg~~Gk~FcaG~DL~~~~~ 91 (546)
T TIGR03222 13 WKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVR-TVVMTSGKDRVFCSGANIFMLGL 91 (546)
T ss_pred EEEEeeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCee-EEEEecCCCCCCcCCcCHHHHhc
Confidence 567888999999999973 1 1679999999999999999999 789999 9999987 599999999998753
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecC-Cceeeccccc-cCcCCChhh
Q 026127 72 AGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRD-KGVLYMSEVD-IGLTLPDYF 149 (243)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~-~~~f~~pe~~-~Gl~~p~~g 149 (243)
... ................+...+.++||||||+|||+|+|+|++|+++||+||++++ .++|++||++ +|+ +|++|
T Consensus 92 ~~~-~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl-~P~~g 169 (546)
T TIGR03222 92 STH-AWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGV-LPGTG 169 (546)
T ss_pred ccc-chhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCc-CCccc
Confidence 211 0001111111122234556778999999999999999999999999999999986 2689999997 999 78876
Q ss_pred H-HHHH--HHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCCh-----hHHHHHHHH
Q 026127 150 A-ALFR--AKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAG-----EVYAEIRKS 221 (243)
Q Consensus 150 ~-~~l~--~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~-----~a~~~~k~~ 221 (243)
+ .++. +++| ..++++|+++|++++|+||+++||||+|+|+ +++.+++.++|++++..|+.| ..+..+++.
T Consensus 170 g~~~l~~~~~vg-~~~A~~llltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~lA~~la~~~p~~~~~~~~~~~~~~~~ 247 (546)
T TIGR03222 170 GLTRVTDKRRVR-RDHADIFCTIEEGVRGKRAKEWRLVDEVVKP-SQFDAAIAERAAELAAQSDRPADAKGVQLTPLERT 247 (546)
T ss_pred hhhhccccchhC-HHHHHHHHHcCCCccHHHHHHcCCceEEeCh-HHHHHHHHHHHHHHHhCCCCCcCCCceeeeehhhh
Confidence 4 5676 6899 8999999999999999999999999999998 889999999999999987544 233445555
Q ss_pred HhHH
Q 026127 222 LCPD 225 (243)
Q Consensus 222 l~~~ 225 (243)
+..+
T Consensus 248 ~~~~ 251 (546)
T TIGR03222 248 IDED 251 (546)
T ss_pred cccC
Confidence 5443
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. |
| >KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=261.57 Aligned_cols=211 Identities=18% Similarity=0.314 Sum_probs=190.8
Q ss_pred EeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC-CCcccCCCChhhHHhcCCCcchHHHHHH
Q 026127 6 KHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH-GKFFSNGFDLAWAQAAGSRTGARERLHY 84 (243)
Q Consensus 6 ~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~-g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 84 (243)
.+.||..|-+|||. +.|+++..|+++|.++++.+..|+.+| +|++.+. ++.||+|.||++-... .+.+...
T Consensus 37 ~~~GItvl~mNRpa--~kNsl~r~~~~~l~~~l~~lk~D~~~R-vvilrS~vpgvFCaGADLKER~~M-----s~~Ev~~ 108 (291)
T KOG1679|consen 37 KDEGITILNMNRPA--KKNSLGRVFVKQLREVLDELKYDNKVR-VVILRSLVPGVFCAGADLKERKTM-----SPSEVTR 108 (291)
T ss_pred CCCCeEEEecCChh--hhccHHHHHHHHHHHHHHHHhhCCcee-EEEEecCCCceeecCcchHhhhcC-----CHHHHHH
Confidence 35689999999998 999999999999999999999999999 7777775 6999999999987653 2677889
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCHHHH
Q 026127 85 MVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSATAR 163 (243)
Q Consensus 85 ~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~~a 163 (243)
|.+.++.++..|.++|.||||+|+|.++|||++|+++||+|+|+++ ++++++|.++++ +|+.| +++|+|.+| ...+
T Consensus 109 fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~-akmGLvET~lai-iPGaGGtQRLpR~vg-~ala 185 (291)
T KOG1679|consen 109 FVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASS-AKMGLVETKLAI-IPGAGGTQRLPRIVG-VALA 185 (291)
T ss_pred HHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhh-ccccccccceee-ecCCCccchhHHHHh-HHHH
Confidence 9999999999999999999999999999999999999999999988 899999999999 78887 679999999 9999
Q ss_pred HHHHhcCcCCCHHHHHHcCcchhccCCH---hHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHH
Q 026127 164 RDVLLRAKKIKGEEALRMGLVEAAYDSE---EQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGV 229 (243)
Q Consensus 164 ~~l~l~g~~~~a~eA~~~Glv~~v~~~~---~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~ 229 (243)
+++++|++.+++.||..+|||+.||... |...+.+.++|++|..+. |.+++..|..++....-.
T Consensus 186 KELIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~g--Piavr~aKlAIn~G~evd 252 (291)
T KOG1679|consen 186 KELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQG--PIAVRLAKLAINLGMEVD 252 (291)
T ss_pred HhHhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCC--chhhhHHHHHhccCceec
Confidence 9999999999999999999999999653 366777999999998876 899999999887665443
|
|
| >PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=294.10 Aligned_cols=205 Identities=18% Similarity=0.213 Sum_probs=169.7
Q ss_pred ceeeEeCcEEEEEEcCCC-----CC---CCCCCCHHHHHHHHHHHHHHH-hcCCCCeEEEEecC-CCcccCCCChhhHHh
Q 026127 2 CTLEKHGDVFVLTLTGSS-----DV---DEHRFGPPAIDSILSAIAKAK-AEATPGSALITTSH-GKFFSNGFDLAWAQA 71 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~-----~~---~~N~l~~~~~~~l~~~l~~~~-~d~~v~~~vvl~g~-g~~F~~G~Dl~~~~~ 71 (243)
+.++++++|++|+||||+ ++ +.|++|.+|+.+|.+++++++ +|++|| +||++|. |++||+|.|++++..
T Consensus 17 ~~~e~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vr-vVVLtg~ggk~FcaG~DL~~~~~ 95 (550)
T PRK08184 17 WKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVR-TVVVTSAKDRVFCSGANIFMLGG 95 (550)
T ss_pred EEEEeeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeE-EEEEecCCCCCCCCccCHHhHhc
Confidence 467788999999999763 12 679999999999999999999 789999 9999997 499999999998753
Q ss_pred cCCCcchHHHHHHHH-HHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecC-Cceeeccccc-cCcCCChh
Q 026127 72 AGSRTGARERLHYMV-ESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRD-KGVLYMSEVD-IGLTLPDY 148 (243)
Q Consensus 72 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~-~~~f~~pe~~-~Gl~~p~~ 148 (243)
... .. ......+. .....+..++.++||||||+|||+|+|+|++|+++|||||++++ .++|++||++ +|+ +|++
T Consensus 96 ~~~-~~-~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl-~P~~ 172 (550)
T PRK08184 96 SSH-AW-KVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGV-LPGT 172 (550)
T ss_pred ccc-ch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhcccc-CCCc
Confidence 211 00 11111111 12233456788999999999999999999999999999999976 3689999997 999 7887
Q ss_pred h-HHHHH--HHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCCh
Q 026127 149 F-AALFR--AKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAG 212 (243)
Q Consensus 149 g-~~~l~--~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~ 212 (243)
| ..++. +++| ...+++++++|+.++|+||+++|||++|+|+ +++.+++.+++++|+.+|+.+
T Consensus 173 gg~~rl~~~~~vg-~~~A~~llltG~~i~AeeA~~~GLVd~vv~~-d~l~~~a~~~A~~ia~~~~~~ 237 (550)
T PRK08184 173 GGLTRVTDKRKVR-RDLADIFCTIEEGVRGKRAVDWRLVDEVVKP-SKFDAKVAERAAELAAASDRP 237 (550)
T ss_pred chHHHhhhhhhcC-HHHHHHHHHhCCcccHHHHHHcCCccEeeCH-HHHHHHHHHHHHHHHhCCCCC
Confidence 6 45777 6799 8999999999999999999999999999998 899999999999999987443
|
|
| >COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=249.78 Aligned_cols=212 Identities=20% Similarity=0.342 Sum_probs=182.8
Q ss_pred ceeeEe-CcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC--C-CcccCCCChhhHHh-cCCCc
Q 026127 2 CTLEKH-GDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH--G-KFFSNGFDLAWAQA-AGSRT 76 (243)
Q Consensus 2 ~~~~~~-~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~--g-~~F~~G~Dl~~~~~-~~~~~ 76 (243)
|.+++. ++|+.|++|||+ .+|++.+....|+.+++..+..|++|. +||+||. | .+||+|+|-+--.. ....+
T Consensus 20 I~Y~~~~~giakItinRPe--vrNAfrP~TV~Em~~Af~~Ar~d~~vG-vi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~ 96 (282)
T COG0447 20 ITYEKSVDGIAKITINRPE--VRNAFRPKTVDEMIDAFADARDDPNVG-VILLTGNGDGDKAFCSGGDQKVRGDSGGYVD 96 (282)
T ss_pred eEEeeccCceEEEEecChh--hhccCCCccHHHHHHHHHhhhcCCCcc-EEEEecCCCCCeeeecCCCceecccCCCccC
Confidence 467776 899999999998 999999999999999999999999998 9999984 4 99999999874322 11101
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHH
Q 026127 77 GARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAK 156 (243)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~ 156 (243)
. +...+ -...++-+.|+.+||||||.|+|.++|||-.|-+.||+.||+++ ++|+....++|--=+++|+.+|.+.
T Consensus 97 d--~~~~r--LnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~n-A~FgQTgp~VGSFD~G~Gs~ylar~ 171 (282)
T COG0447 97 D--DGIPR--LNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADN-AIFGQTGPKVGSFDGGYGSSYLARI 171 (282)
T ss_pred C--ccCcc--cchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhc-chhcCCCCCcccccCcccHHHHHHH
Confidence 1 11111 12345666788999999999999999999999999999999998 8999999999982356678899999
Q ss_pred hCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 157 VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
+| .+.|+++.+.++.++|+||+++|+||.|||. ++|+++..++++++..++ |.+++.+|..++.+
T Consensus 172 VG-qKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~-~~LE~e~v~W~~E~l~kS--P~AlR~LK~Afnad 236 (282)
T COG0447 172 VG-QKKAREIWFLCRQYDAEEALDMGLVNTVVPH-ADLEKETVQWAREMLAKS--PTALRMLKAAFNAD 236 (282)
T ss_pred hh-hhhhHHhhhhhhhccHHHHHhcCceeeeccH-HHHHHHHHHHHHHHHhcC--hHHHHHHHHHhcCC
Confidence 99 9999999999999999999999999999998 899999999999999998 99999999988754
|
|
| >KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=233.56 Aligned_cols=209 Identities=22% Similarity=0.306 Sum_probs=185.7
Q ss_pred eeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHH
Q 026127 4 LEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLH 83 (243)
Q Consensus 4 ~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 83 (243)
++.+++|-.|+||+|+ +.|+++.+|+.+|.+.+.....+.++| +|||+..|+.||+|.||+++.+... .+.-.
T Consensus 36 ~~~~~gvR~i~l~npK--k~NtLSLaM~~~Lq~~ll~d~d~~dlr-~viita~GkifSaGH~LKELt~e~g----~d~ha 108 (287)
T KOG1682|consen 36 VKEHNGVREITLNNPK--KLNTLSLAMMCALQDALLKDKDNLDLR-CVIITAQGKIFSAGHNLKELTNEPG----SDIHA 108 (287)
T ss_pred cccccceeeeeecCcc--ccchhhHHHHHHHHHHHhhccccccee-EEEEecCCccccccccHHHhhcCcc----chHHH
Confidence 4456899999999998 899999999999999999998888999 9999999999999999999987422 33344
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHH
Q 026127 84 YMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATAR 163 (243)
Q Consensus 84 ~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a 163 (243)
..++...+++.-|+++|+|||+-|||.+..+||.|...||++||+++ ++|..|...+|+ +....+.-+.|.++ +..+
T Consensus 109 evFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~-SkF~tPG~~vGl-FCSTPGvAlaRavp-Rkva 185 (287)
T KOG1682|consen 109 EVFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKN-SKFSTPGAGVGL-FCSTPGVALARAVP-RKVA 185 (287)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecC-ccccCCCCceee-EecCcchhHhhhcc-hhHH
Confidence 56777888999999999999999999999999999999999999988 899999999999 77666667889999 8999
Q ss_pred HHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 164 RDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 164 ~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
.+|++||.+++++||+..||+++|||+ +|++.++.++++.|-..+ +.....-|...++.
T Consensus 186 ~~ML~Tg~Pi~~eeAl~sGlvskvVp~-~el~~e~~~i~~~i~~~s--rav~slgk~f~y~q 244 (287)
T KOG1682|consen 186 AYMLMTGLPITGEEALISGLVSKVVPA-EELDKEIEEITNAIKAKS--RAVISLGKEFYYKQ 244 (287)
T ss_pred HHHHHhCCCCchHHHHHhhhhhhcCCH-HHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHH
Confidence 999999999999999999999999998 899999999999998876 55556666555544
|
|
| >KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=224.43 Aligned_cols=186 Identities=20% Similarity=0.248 Sum_probs=162.9
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC-CCcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH-GKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~-g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
|.++..+....||||||+ ..|++|.+|...+.-.+..++.++.++ +||+.|. +++||+|+|+........ ++...
T Consensus 40 VL~e~~~~~r~itLNRPK--aLNAlnleMv~~~~~~L~~we~s~~~k-~vIlkgs~~raFCAGgDI~~~ae~~~-d~~~~ 115 (401)
T KOG1684|consen 40 VLVEGKGCARVITLNRPK--ALNALNLEMVLSIYPKLVEWEKSPLVK-LVILKGSGGRAFCAGGDIKAVAESIK-DKETP 115 (401)
T ss_pred eEEecCCceeEEEecCch--hhccccHHHHHHHHHHHHhhccCCCce-EEEEecCCCceeecCccHHHHHHHhh-cCCch
Confidence 456778889999999997 789999999999999999999999999 8888888 599999999986554332 33345
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHH-HHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAA-LFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~-~l~~~~g~ 159 (243)
..+.++..-+.+...|.++.||.||.++|..+|||+.|+..--||||+|+ +.|.+||..+|+ +|+.|+. +++|.-|
T Consensus 116 ~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATer-T~~AmPEt~IGl-fPDVG~Sy~lsrlpg- 192 (401)
T KOG1684|consen 116 EVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATER-TVFAMPETGIGL-FPDVGASYFLSRLPG- 192 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeecc-ceeccccccccc-ccCccceeehhhCcc-
Confidence 67788888899999999999999999999999999999999999999988 899999999999 9999976 4555444
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAE 196 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~ 196 (243)
....++.+||+++++.+|+..||.+.-|++ +++-.
T Consensus 193 -~lg~YLgLTG~rl~GaD~~~~GlATHyv~S-~~l~~ 227 (401)
T KOG1684|consen 193 -YLGLYLGLTGQRLSGADALRCGLATHYVPS-EKLPS 227 (401)
T ss_pred -HHHHhhhhccceecchHHHHhcchhhccch-hhhhH
Confidence 677899999999999999999999999998 55533
|
|
| >cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-21 Score=157.01 Aligned_cols=152 Identities=22% Similarity=0.260 Sum_probs=118.7
Q ss_pred EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHH
Q 026127 10 VFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESF 89 (243)
Q Consensus 10 v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (243)
|+.|.++.+ ++..+...+.+.++.+..++ ++ .|++. .=|.|+++...
T Consensus 1 ~~vv~i~g~-------I~~~~~~~l~~~l~~a~~~~-~~-~vvl~----InSpGG~v~~~-------------------- 47 (187)
T cd07020 1 VYVLEINGA-------ITPATADYLERAIDQAEEGG-AD-ALIIE----LDTPGGLLDST-------------------- 47 (187)
T ss_pred CEEEEEeeE-------EChHHHHHHHHHHHHHHhCC-CC-EEEEE----EECCCCCHHHH--------------------
Confidence 356777644 67778889999999998765 67 66663 23556655432
Q ss_pred HHHHHHHhcCCCcEEEEEc---cccchHHHHHHHhcceeEEecCCceeeccccccCcCCChh---------------hHH
Q 026127 90 RPVVAAMMDLPMPTVAAVN---GHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDY---------------FAA 151 (243)
Q Consensus 90 ~~~~~~l~~~~kp~Iaav~---G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~---------------g~~ 151 (243)
..++.+|..+|||||++|+ |+|.|+|+.++++||++|++++ ++|+.++...+. .+.. ...
T Consensus 48 ~~i~~~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~-a~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 125 (187)
T cd07020 48 REIVQAILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPG-TNIGAAHPVAIG-GGGGSDPVMEKKILNDAVAYIR 125 (187)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCC-CcEEeccccccC-CCCcchHHHHHHHHHHHHHHHH
Confidence 2355667789999999999 9999999999999999999998 899999988554 3322 234
Q ss_pred HHHHHhCCH--HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHH
Q 026127 152 LFRAKVGSA--TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEA 197 (243)
Q Consensus 152 ~l~~~~g~~--~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~ 197 (243)
.+.++.| . ..+++++++|+.|+++||+++||||+|+++.+++...
T Consensus 126 ~l~~~~G-~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~~ 172 (187)
T cd07020 126 SLAELRG-RNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLKK 172 (187)
T ss_pred HHHHHcC-CCHHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHHH
Confidence 6788888 5 6788999999999999999999999999984456543
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c |
| >cd07014 S49_SppA Signal peptide peptidase A | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-20 Score=149.98 Aligned_cols=144 Identities=18% Similarity=0.192 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 026127 28 PPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAV 107 (243)
Q Consensus 28 ~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav 107 (243)
.-.+.+|.++++++.+|++|| +||+++ +|.|.|+.... .+.+++..+.+++|||||++
T Consensus 21 ~~~~~~l~~~l~~a~~d~~v~-~vvl~~----~~~gg~~~~~~-----------------~~~~~i~~~~~~~kpVia~v 78 (177)
T cd07014 21 NVSGDTTAAQIRDARLDPKVK-AIVLRV----NSPGGSVTASE-----------------VIRAELAAARAAGKPVVASG 78 (177)
T ss_pred CcCHHHHHHHHHHHhcCCCce-EEEEEe----eCCCcCHHHHH-----------------HHHHHHHHHHhCCCCEEEEE
Confidence 346789999999999999999 999976 68888776421 23446777888999999999
Q ss_pred ccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HH--------HHHHHhC-CHHHHHHHHhcCcCCCHHH
Q 026127 108 NGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AA--------LFRAKVG-SATARRDVLLRAKKIKGEE 177 (243)
Q Consensus 108 ~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~--------~l~~~~g-~~~~a~~l~l~g~~~~a~e 177 (243)
+|.|.|+|+.|+++||+++++++ ++|+++.+..+. -+... .. .+.+..| .+...++++..|..++|+|
T Consensus 79 ~G~a~g~g~~la~a~D~i~a~~~-a~~~~~G~~~~~-~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~ 156 (177)
T cd07014 79 GGNAASGGYWISTPANYIVANPS-TLVGSIGIFGVQ-LADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQD 156 (177)
T ss_pred CCchhHHHHHHHHhCCEEEECCC-CeEEEechHhhH-HHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHH
Confidence 99999999999999999999998 889988776553 22111 11 2333333 1555778888999999999
Q ss_pred HHHcCcchhccCCHhHHHH
Q 026127 178 ALRMGLVEAAYDSEEQVAE 196 (243)
Q Consensus 178 A~~~Glv~~v~~~~~~l~~ 196 (243)
|++.||||++.+. +++.+
T Consensus 157 A~~~GLVD~v~~~-~e~~~ 174 (177)
T cd07014 157 AKANGLVDSLGSF-DDAVA 174 (177)
T ss_pred HHHcCCcccCCCH-HHHHH
Confidence 9999999999986 66654
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p |
| >cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.3e-17 Score=133.13 Aligned_cols=104 Identities=19% Similarity=0.222 Sum_probs=81.2
Q ss_pred cEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHH
Q 026127 9 DVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVES 88 (243)
Q Consensus 9 ~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (243)
+|+.|.++.|=....+.-+...+.++.++++++..|++|+ +||++ .||.|+|+.....
T Consensus 1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~-~ivL~----~~s~Gg~~~~~~~----------------- 58 (211)
T cd07019 1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVK-AIVLR----VNSPGGSVTASEV----------------- 58 (211)
T ss_pred CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCce-EEEEE----EcCCCcCHHHHHH-----------------
Confidence 3555655533111233334557899999999999999999 89986 7999999876532
Q ss_pred HHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceee
Q 026127 89 FRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLY 135 (243)
Q Consensus 89 ~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~ 135 (243)
+.+.+..+.+++||||++++|.|.|+|+.|+++||++|++++ ++++
T Consensus 59 ~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~-a~~g 104 (211)
T cd07019 59 IRAELAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPS-TLTG 104 (211)
T ss_pred HHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCC-CEEE
Confidence 234566778899999999999999999999999999999987 6664
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te |
| >cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.9e-16 Score=121.29 Aligned_cols=135 Identities=21% Similarity=0.200 Sum_probs=102.6
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVA 105 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 105 (243)
++..+..+|.+.+++++.|+.++ .|++.. .|.|+++... ..+...|..++||||+
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~-~ivl~~----~s~Gg~~~~~--------------------~~i~~~l~~~~kpvva 62 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVK-AIVLEV----NTPGGRVDAG--------------------MNIVDALQASRKPVIA 62 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCc-eEEEEE----ECCCcCHHHH--------------------HHHHHHHHHhCCCEEE
Confidence 66788999999999999999999 888854 5777766532 2345566778899999
Q ss_pred EEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCCh----------hhH---HHHHHH------hCCHHHHHHH
Q 026127 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPD----------YFA---ALFRAK------VGSATARRDV 166 (243)
Q Consensus 106 av~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~----------~g~---~~l~~~------~g~~~~a~~l 166 (243)
.++|.|.++|+.|+++||.|++.++ +.|++.....+..... .-. ..+... +. .....+.
T Consensus 63 ~~~g~~~s~g~~la~~~d~~~~~~~-a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~-~~~~~~~ 140 (161)
T cd00394 63 YVGGQAASAGYYIATAANKIVMAPG-TRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQT-TEKLEED 140 (161)
T ss_pred EECChhHHHHHHHHhCCCEEEECCC-CEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHH
Confidence 9999999999999999999999998 7898877765552111 000 111111 22 3345677
Q ss_pred HhcCcCCCHHHHHHcCcchhc
Q 026127 167 LLRAKKIKGEEALRMGLVEAA 187 (243)
Q Consensus 167 ~l~g~~~~a~eA~~~Glv~~v 187 (243)
+..+..++++||+++||||+|
T Consensus 141 ~~~~~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 141 IEKDLVLTAQEALEYGLVDAL 161 (161)
T ss_pred hcCCcEEcHHHHHHcCCcCcC
Confidence 778999999999999999975
|
Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec |
| >cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.5e-16 Score=126.92 Aligned_cols=96 Identities=18% Similarity=0.262 Sum_probs=79.0
Q ss_pred EEEEEEcCCCCCCCCCCC---HHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHH
Q 026127 10 VFVLTLTGSSDVDEHRFG---PPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMV 86 (243)
Q Consensus 10 v~~i~ln~p~~~~~N~l~---~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~ 86 (243)
|++|.++.+ ++ ..++.+|.++++.+.+|++++ +|++.+ +|.|+|+....
T Consensus 2 v~vi~i~g~-------i~~~~~~~~~~l~~~l~~a~~d~~i~-~ivl~~----~s~Gg~~~~~~---------------- 53 (208)
T cd07023 2 IAVIDIEGT-------ISDGGGIGADSLIEQLRKAREDDSVK-AVVLRI----NSPGGSVVASE---------------- 53 (208)
T ss_pred EEEEEEEEE-------EcCCCCCCHHHHHHHHHHHHhCCCCc-EEEEEE----ECCCCCHHHHH----------------
Confidence 567777654 44 689999999999999999999 889877 58898876522
Q ss_pred HHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceee
Q 026127 87 ESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLY 135 (243)
Q Consensus 87 ~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~ 135 (243)
.+.+.+..+..++|||||+++|.|.|+|+.++++||+++++++ +.|+
T Consensus 54 -~i~~~i~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~-s~~g 100 (208)
T cd07023 54 -EIYREIRRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPT-TITG 100 (208)
T ss_pred -HHHHHHHHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCC-CeEE
Confidence 1244566778889999999999999999999999999999987 6664
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad |
| >cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=125.66 Aligned_cols=90 Identities=24% Similarity=0.183 Sum_probs=69.8
Q ss_pred CCCC-CCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCC
Q 026127 22 DEHR-FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLP 100 (243)
Q Consensus 22 ~~N~-l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (243)
..|+ ++..++.+|.+++++++.|++|+ +||++. +|.|.++.... .+.+.+..+.. +
T Consensus 17 ~~~~~~~~~~~~~l~~~l~~a~~d~~i~-~Vvl~~----~s~gg~~~~~~-----------------~l~~~l~~~~~-~ 73 (214)
T cd07022 17 WLEASSGLTSYEGIAAAIRAALADPDVR-AIVLDI----DSPGGEVAGVF-----------------ELADAIRAARA-G 73 (214)
T ss_pred cccCCCCcccHHHHHHHHHHHhhCCCCc-EEEEEE----eCCCCcHHHHH-----------------HHHHHHHHHhc-C
Confidence 3453 45789999999999999999999 888864 56676544321 12333444444 6
Q ss_pred CcEEEEEccccchHHHHHHHhcceeEEecCCceee
Q 026127 101 MPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLY 135 (243)
Q Consensus 101 kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~ 135 (243)
|||||+++|.|.|+|+.++++||+++++++ +.|+
T Consensus 74 KpViA~v~g~a~s~gy~lA~~aD~i~a~~~-a~~g 107 (214)
T cd07022 74 KPIVAFVNGLAASAAYWIASAADRIVVTPT-AGVG 107 (214)
T ss_pred CCEEEEECCchhhHHHHHHhcCCEEEEcCC-CeEE
Confidence 999999999999999999999999999988 6664
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. |
| >TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.7e-15 Score=120.37 Aligned_cols=154 Identities=17% Similarity=0.261 Sum_probs=105.0
Q ss_pred EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHH
Q 026127 10 VFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESF 89 (243)
Q Consensus 10 v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (243)
|++|.++.+ ++ ....+|.++++++.+|++++ +||++. .|.|+++...
T Consensus 2 v~vi~i~g~-------i~-~s~~~l~~~l~~a~~d~~i~-~vvl~~----~s~Gg~~~~~-------------------- 48 (207)
T TIGR00706 2 IAILPVSGA-------IA-VSPEDFDKKIKRIKDDKSIK-ALLLRI----NSPGGTVVAS-------------------- 48 (207)
T ss_pred EEEEEEEEE-------Ee-cCHHHHHHHHHHHhhCCCcc-EEEEEe----cCCCCCHHHH--------------------
Confidence 677778754 32 34678999999999999999 899876 4778766543
Q ss_pred HHHHHHHhcCC--CcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccc------------cCcCC----------
Q 026127 90 RPVVAAMMDLP--MPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVD------------IGLTL---------- 145 (243)
Q Consensus 90 ~~~~~~l~~~~--kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~------------~Gl~~---------- 145 (243)
..+..+|.+++ ||||+.++|.|.|+|+.|+++||.++++++ +.++...+. +|+.+
T Consensus 49 ~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~-a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~ 127 (207)
T TIGR00706 49 EEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPG-TITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKD 127 (207)
T ss_pred HHHHHHHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCC-CeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcC
Confidence 22444555555 999999999999999999999999999998 655432111 22210
Q ss_pred ---C-----hhhHHHHH-----------------HHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHH
Q 026127 146 ---P-----DYFAALFR-----------------AKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMR 200 (243)
Q Consensus 146 ---p-----~~g~~~l~-----------------~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~ 200 (243)
| .-.-..+. |.+. ....+ -++.|+.|++++|++.||||++... +++.+.+.+
T Consensus 128 ~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~-~~~~~-~~~~~~~~~~~~A~~~gLvD~i~~~-~~~~~~~~~ 204 (207)
T TIGR00706 128 IGSPTRELTPEERDILQNLVNESYEQFVQVVAKGRNLP-VEDVK-KFADGRVFTGRQALKLRLVDKLGTE-DDALKWLAE 204 (207)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-HHHHH-HHhcCCcccHHHHHHcCCCcccCCH-HHHHHHHHH
Confidence 0 00000111 1122 22222 3567899999999999999999976 666555444
|
The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively. |
| >cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.2e-15 Score=115.79 Aligned_cols=129 Identities=16% Similarity=0.173 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEc
Q 026127 29 PAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVN 108 (243)
Q Consensus 29 ~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~ 108 (243)
.+...+.+.++.+..++.+ .+.+.+ .|+++.. ...++..|..+|||||+.++
T Consensus 15 ~~~~~~~~~l~~~~~~~~i--~l~ins------pGG~~~~--------------------~~~i~~~i~~~~~pvi~~v~ 66 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI--TVRINS------PGGDVFA--------------------GLAIYNALKRHKGKVTVKID 66 (160)
T ss_pred cCHHHHHHHHHhccCCCCE--EEEEEC------CCCCHHH--------------------HHHHHHHHHhcCCCEEEEEc
Confidence 5778888889988877443 455544 4443322 13466777888999999999
Q ss_pred cccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh----------------HHHHHHHhCC-HHHHHHHHhcCc
Q 026127 109 GHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF----------------AALFRAKVGS-ATARRDVLLRAK 171 (243)
Q Consensus 109 G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g----------------~~~l~~~~g~-~~~a~~l~l~g~ 171 (243)
|.|.|+|+.++++||+|+++++ ++|.++....|. .+... ...+.++.|. ....++++..+.
T Consensus 67 g~a~s~g~~ia~a~d~~~~~~~-a~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~ 144 (160)
T cd07016 67 GLAASAASVIAMAGDEVEMPPN-AMLMIHNPSTGA-AGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAET 144 (160)
T ss_pred chHHhHHHHHHhcCCeEEECCC-cEEEEECCcccc-CcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCe
Confidence 9999999999999999999998 889987776665 33321 2236677774 355666666677
Q ss_pred CCCHHHHHHcCcchhc
Q 026127 172 KIKGEEALRMGLVEAA 187 (243)
Q Consensus 172 ~~~a~eA~~~Glv~~v 187 (243)
.++++||+++||||+|
T Consensus 145 ~l~a~eA~~~GliD~v 160 (160)
T cd07016 145 WLTAQEAVELGFADEI 160 (160)
T ss_pred ECcHHHHHHcCCCCcC
Confidence 8999999999999986
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a |
| >TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=135.38 Aligned_cols=173 Identities=20% Similarity=0.239 Sum_probs=121.0
Q ss_pred EeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHH
Q 026127 6 KHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYM 85 (243)
Q Consensus 6 ~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 85 (243)
.++.|+.|.++.+=.+..|..+....+.+.+.++++..|++|| +||++-. |.|++....
T Consensus 306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~Vk-aIVLrin----SpGGs~~as---------------- 364 (584)
T TIGR00705 306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIK-AVVLRIN----SPGGSVFAS---------------- 364 (584)
T ss_pred CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCce-EEEEEec----CCCCCHHHH----------------
Confidence 4678999999865311234334445677889999999999999 8888754 334432211
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCcee------eccc------cccCcCCChhh-HH-
Q 026127 86 VESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVL------YMSE------VDIGLTLPDYF-AA- 151 (243)
Q Consensus 86 ~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f------~~pe------~~~Gl~~p~~g-~~- 151 (243)
+.+.+.+.++...+||||+.++|.|.+||+.++++||.++|++. +.+ +.+. .++|+ .|+.. ..
T Consensus 365 -e~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~-t~~GSIGv~~~~~~~~~~l~klGi-~~~~~~t~~ 441 (584)
T TIGR00705 365 -EIIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPN-TITGSIGVFSVLPTFENSLDRIGV-HVDGVSTHE 441 (584)
T ss_pred -HHHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCC-CeeecCEEEEEccCHHHHHHhcCC-ceEEEeccC
Confidence 12234555566788999999999999999999999999999987 555 4442 46777 34322 11
Q ss_pred ---------------------------HHHHHhCCHHH-----HHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHH
Q 026127 152 ---------------------------LFRAKVGSATA-----RRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASM 199 (243)
Q Consensus 152 ---------------------------~l~~~~g~~~~-----a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~ 199 (243)
.+..+++ ..+ ..+.+.+|+.|+++||+++||||++..- ++|.
T Consensus 442 ~~~~s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va-~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~~-----~~Ai 515 (584)
T TIGR00705 442 LANVSLLRPLTAEDQAIMQLSVEAGYRRFLSVVS-AGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGGL-----DEAV 515 (584)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-hhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCCH-----HHHH
Confidence 1222444 333 5677889999999999999999999542 5566
Q ss_pred HHHHHHhcC
Q 026127 200 RLAKQLAGR 208 (243)
Q Consensus 200 ~~a~~l~~~ 208 (243)
+.|++++..
T Consensus 516 ~~a~~la~~ 524 (584)
T TIGR00705 516 AKAAKLAHC 524 (584)
T ss_pred HHHHHHcCC
Confidence 777777776
|
E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. |
| >cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.8e-13 Score=106.56 Aligned_cols=151 Identities=23% Similarity=0.317 Sum_probs=106.7
Q ss_pred EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHH
Q 026127 10 VFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESF 89 (243)
Q Consensus 10 v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (243)
|..|.++.+ ++......+.+.++++.+++ ++ .|++. .=|.|+.+.. .
T Consensus 1 v~vi~i~g~-------I~~~~~~~l~~~l~~a~~~~-~~-~ivl~----inspGG~v~~--------------------~ 47 (178)
T cd07021 1 VYVIPIEGE-------IDPGLAAFVERALKEAKEEG-AD-AVVLD----IDTPGGRVDS--------------------A 47 (178)
T ss_pred CEEEEEeeE-------ECHHHHHHHHHHHHHHHhCC-CC-eEEEE----EECcCCCHHH--------------------H
Confidence 356667644 67788888999999999886 56 56653 2455665443 2
Q ss_pred HHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCCh----------hh--HHHHHHHh
Q 026127 90 RPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPD----------YF--AALFRAKV 157 (243)
Q Consensus 90 ~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~----------~g--~~~l~~~~ 157 (243)
..++..|.++|+|||+.|+|.|.++|+.++++||+++++++ +.++.++.-.+- ++ +- ..-+.++-
T Consensus 48 ~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~-a~iG~~~~v~~~--~~~~~~~K~~~~~~~~~~~~A~~~ 124 (178)
T cd07021 48 LEIVDLILNSPIPTIAYVNDRAASAGALIALAADEIYMAPG-ATIGAAEPIPGD--GNGAADEKVQSYWRAKMRAAAEKK 124 (178)
T ss_pred HHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCC-CeEecCeeEcCC--CccchhHHHHHHHHHHHHHHHHHh
Confidence 44677888999999999999999999999999999999998 888876443221 11 00 00122333
Q ss_pred C-CHHHHHHHHhcC-------------cCCCHHHHHHcCcchhccCCHhHHHH
Q 026127 158 G-SATARRDVLLRA-------------KKIKGEEALRMGLVEAAYDSEEQVAE 196 (243)
Q Consensus 158 g-~~~~a~~l~l~g-------------~~~~a~eA~~~Glv~~v~~~~~~l~~ 196 (243)
| ....+..|+-.. -.++++||++.|++|.+.++.++|..
T Consensus 125 gr~~~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~ll~ 177 (178)
T cd07021 125 GRDPDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELLV 177 (178)
T ss_pred CCCHHHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHHhh
Confidence 3 244455555443 26999999999999999998776653
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall |
| >cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-13 Score=112.11 Aligned_cols=145 Identities=17% Similarity=0.208 Sum_probs=100.9
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVA 105 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 105 (243)
-+..++.++.+.++++..|+.|+ +||++..+..| ++.+++++ .+.+..+...+|||||
T Consensus 26 ~~~~~~~~l~~~l~~a~~d~~ik-~vvL~~~s~gg-~~~~~~el--------------------~~~i~~~~~~~kpVia 83 (222)
T cd07018 26 SSELSLRDLLEALEKAAEDDRIK-GIVLDLDGLSG-GLAKLEEL--------------------RQALERFRASGKPVIA 83 (222)
T ss_pred cCCccHHHHHHHHHHHhcCCCeE-EEEEECCCCCC-CHHHHHHH--------------------HHHHHHHHHhCCeEEE
Confidence 35678899999999999999999 99999987776 55544443 3344455667999999
Q ss_pred EEccccchHHHHHHHhcceeEEecCCceeeccccc------------cCcCC-------------Ch----hh---HHHH
Q 026127 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVD------------IGLTL-------------PD----YF---AALF 153 (243)
Q Consensus 106 av~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~------------~Gl~~-------------p~----~g---~~~l 153 (243)
.++| +.++|+.++++||.+++++. +.++...+. +|+.+ |. +. -..+
T Consensus 84 ~~~~-~~sggy~lasaad~I~a~p~-~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~ 161 (222)
T cd07018 84 YADG-YSQGQYYLASAADEIYLNPS-GSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQT 161 (222)
T ss_pred EeCC-CCchhhhhhhhCCEEEECCC-ceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHH
Confidence 9998 88999999999999999987 677753221 11110 00 00 0001
Q ss_pred H-----------------HHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHH
Q 026127 154 R-----------------AKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEA 197 (243)
Q Consensus 154 ~-----------------~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~ 197 (243)
. |.+. .... +-+..|..+++++|++.||||++... +++.+.
T Consensus 162 ~~~l~~~~~~f~~~Va~~R~~~-~~~~-~~~~~~~~~~~~~A~~~GLvD~i~~~-~e~~~~ 219 (222)
T cd07018 162 QALLDSLWDQYLADVAASRGLS-PDAL-EALIDLGGDSAEEALEAGLVDGLAYR-DELEAR 219 (222)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-HHHH-HHHHHcCCcHHHHHHHCCCCCcCCcH-HHHHHH
Confidence 1 1112 2222 33456999999999999999999975 666554
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys |
| >cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.4e-10 Score=88.28 Aligned_cols=151 Identities=19% Similarity=0.244 Sum_probs=107.1
Q ss_pred EEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHH
Q 026127 11 FVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFR 90 (243)
Q Consensus 11 ~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (243)
..|.++.+ ++..+...|.+.++.++++ ..+ .|++. .=|.|+.+... .
T Consensus 2 ~vi~i~G~-------I~~~~~~~l~~~l~~A~~~-~~~-~i~l~----inSPGG~v~~~--------------------~ 48 (172)
T cd07015 2 YVAQIKGQ-------ITSYTYDQFDRYITIAEQD-NAE-AIIIE----LDTPGGRADAA--------------------G 48 (172)
T ss_pred EEEEEeeE-------ECHhHHHHHHHHHHHHhcC-CCC-eEEEE----EECCCCCHHHH--------------------H
Confidence 45666533 7777888889999998865 456 66663 34666655532 2
Q ss_pred HHHHHHhcCCCcEEEEEc---cccchHHHHHHHhcceeEEecCCceeeccccccCcCCC-----hhh----HH------H
Q 026127 91 PVVAAMMDLPMPTVAAVN---GHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLP-----DYF----AA------L 152 (243)
Q Consensus 91 ~~~~~l~~~~kp~Iaav~---G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p-----~~g----~~------~ 152 (243)
.++..|...++||++.++ |.|.++|..++++||.+++.++ +.++....-.|. .+ ... .. -
T Consensus 49 ~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~-s~iG~~~pi~~~-g~~~~~~~~~~ki~~~~~~~~r~ 126 (172)
T cd07015 49 NIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPG-TSIGACRPILGY-SQNGSIIEAPPKITNYFIAYIKS 126 (172)
T ss_pred HHHHHHHhcCcCEEEEEecCCCeehhHHHHHHHhcCceEECCC-CEEEEccccccC-CCCCccccchHHHHHHHHHHHHH
Confidence 356667778999999999 9999999999999999999998 778765543322 12 000 11 1
Q ss_pred HHHHhC-CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHH
Q 026127 153 FRAKVG-SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAE 196 (243)
Q Consensus 153 l~~~~g-~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~ 196 (243)
+.+.-| ....+..++-....++++||+++|++|.|+.+.++|++
T Consensus 127 ~A~~~Gr~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~~~~ll~ 171 (172)
T cd07015 127 LAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELLK 171 (172)
T ss_pred HHHHHCcCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCCHHHHhh
Confidence 223333 23556677777888999999999999999998777653
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle |
| >KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.9e-11 Score=103.83 Aligned_cols=188 Identities=14% Similarity=0.082 Sum_probs=152.8
Q ss_pred cEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchHHHHHHHHH
Q 026127 9 DVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGARERLHYMVE 87 (243)
Q Consensus 9 ~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~ 87 (243)
++..+.++ | ..|..|.++.+++..-++++..+..++ +..+|+.. +.|++|.|..+..... ..+...+.-
T Consensus 66 ~~~~~dmv-i---eav~edl~Lk~~l~~~le~v~~~~~i~-gsntSs~~~~~isa~ld~~e~vvg~-----h~fspa~~m 135 (380)
T KOG1683|consen 66 GFANADMV-I---EAVFEDLELKHELFKSLEKVEPPKCIR-GSNTSSLDINVISAGLDRPEMVVGM-----HFFSPAHWM 135 (380)
T ss_pred ccccccee-c---cchhhhHHHHHHHHHHHHhhcCCccee-eeccccCChHHHhhccCchhhhccc-----cccCHHHHH
Confidence 67777887 6 679999999999999999999998888 88888876 9999999999887642 344556677
Q ss_pred HHHHHHHHHhcCCCcEEEEEccccchHH--HHHHHhcceeEEecCC-ceeeccccccCcCCChhhHHHHHHHhCCHHHHH
Q 026127 88 SFRPVVAAMMDLPMPTVAAVNGHAAAAG--LTLALSHDYVIMRRDK-GVLYMSEVDIGLTLPDYFAALFRAKVGSATARR 164 (243)
Q Consensus 88 ~~~~~~~~l~~~~kp~Iaav~G~~~G~G--~~la~~~D~~ia~~~~-~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~ 164 (243)
.+++++.+.++++.|+.+++||.+--++ +.++.+|+|++...-. ...+..+...++..|.|-...+...+| ...+.
T Consensus 136 ~LlEii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fG-f~~g~ 214 (380)
T KOG1683|consen 136 QLLEIILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFG-FRVGE 214 (380)
T ss_pred HHHHHHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcC-ccccH
Confidence 7899999999999999999999998888 8999999999997332 333678888886578887777777777 55566
Q ss_pred HHHhcCcCCCHHHHHHcCcchhccCC-HhHHHHHHHHHHHHHhc
Q 026127 165 DVLLRAKKIKGEEALRMGLVEAAYDS-EEQVAEASMRLAKQLAG 207 (243)
Q Consensus 165 ~l~l~g~~~~a~eA~~~Glv~~v~~~-~~~l~~~a~~~a~~l~~ 207 (243)
..+-.+.-|+..||++.|+++++.+. .+++.+..+.-.+...+
T Consensus 215 ~~L~d~~gfdv~eal~~gl~~~~~~r~~eel~~~~~~g~kT~kg 258 (380)
T KOG1683|consen 215 RALADGVGFDVAEALAVGLGDEIGPRIEEELLEKGRAGIKTGKG 258 (380)
T ss_pred HHHhhccCccHHHHHhhccchhccchhHHHHHHHHhhhhhccCc
Confidence 66778999999999999999999995 56777766655444433
|
|
| >PRK10949 protease 4; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.5e-09 Score=97.78 Aligned_cols=166 Identities=20% Similarity=0.267 Sum_probs=104.4
Q ss_pred eCcEEEEEEcCCCC---CCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHH
Q 026127 7 HGDVFVLTLTGSSD---VDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLH 83 (243)
Q Consensus 7 ~~~v~~i~ln~p~~---~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 83 (243)
.+.|+.|.++.+=. ...+.++. +.+.+.++++.+|++|| +||+.-. |.|+....
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vk-aVvLrIn----SpGGs~~a--------------- 381 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVK-AIVLRVN----SPGGSVTA--------------- 381 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCc-EEEEEec----CCCCcHHH---------------
Confidence 46788888763210 01223443 56788899999999999 8888653 44443221
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeec-------ccc-----ccCcCCC-----
Q 026127 84 YMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYM-------SEV-----DIGLTLP----- 146 (243)
Q Consensus 84 ~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~-------pe~-----~~Gl~~p----- 146 (243)
.+.+.+.+.++....||||+.+.|.|..||+-++++||.++|.+. +..+- |.. ++|+..-
T Consensus 382 --se~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~-t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~ 458 (618)
T PRK10949 382 --SEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPS-TLTGSIGIFGVINTVENSLDSIGVHTDGVSTS 458 (618)
T ss_pred --HHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCC-CceeeCcEEEEccCHHHHHHhcCCceeEEecc
Confidence 122344455556678999999999999999999999999999886 33331 110 1232100
Q ss_pred ------------hhhHHHH-----------H------HHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHH
Q 026127 147 ------------DYFAALF-----------R------AKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEA 197 (243)
Q Consensus 147 ------------~~g~~~l-----------~------~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~ 197 (243)
.-.-..+ . |.+. .... +-+..|+.|++++|++.||||++-.- ++..+.
T Consensus 459 ~~~~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~-~~~v-~~ia~Grv~tg~~A~~~GLVD~lG~~-~~ai~~ 535 (618)
T PRK10949 459 PLADVSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKT-PEQI-DKIAQGHVWTGQDAKANGLVDSLGDF-DDAVAK 535 (618)
T ss_pred ccCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-HHHH-HHHhcCCcccHHHHHHcCCCccCCCH-HHHHHH
Confidence 0000001 1 1122 2222 33568999999999999999999875 555555
Q ss_pred HHHH
Q 026127 198 SMRL 201 (243)
Q Consensus 198 a~~~ 201 (243)
+.++
T Consensus 536 a~~~ 539 (618)
T PRK10949 536 AAEL 539 (618)
T ss_pred HHHH
Confidence 5444
|
|
| >cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-08 Score=80.11 Aligned_cols=135 Identities=16% Similarity=0.131 Sum_probs=89.1
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVA 105 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 105 (243)
++..+..++.+.|..++.++.++ .|++. .=|.|+++.. ...++..|...++|+++
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~-~i~l~----InSpGG~v~~--------------------~~~i~~~i~~~~~~v~~ 63 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEK-DIYLY----INSPGGDVFA--------------------GMAIYDTIKFIKADVVT 63 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCC-CEEEE----EECCCCcHHH--------------------HHHHHHHHHhcCCCceE
Confidence 66788999999999999887666 44442 2355554432 23466677778999999
Q ss_pred EEccccchHHHHHHHhcc--eeEEecCCceeeccccccCcCCChh-hHH---------------HHHHHhC-CHHHHHHH
Q 026127 106 AVNGHAAAAGLTLALSHD--YVIMRRDKGVLYMSEVDIGLTLPDY-FAA---------------LFRAKVG-SATARRDV 166 (243)
Q Consensus 106 av~G~~~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl~~p~~-g~~---------------~l~~~~g-~~~~a~~l 166 (243)
.+.|.|.++|..+++++| .|++.++ +.+.+....-+. .... -.. .+.++-| .....+++
T Consensus 64 ~~~g~aaS~~~~i~~a~~~g~r~~~p~-a~~~ih~~~~~~-~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~ 141 (162)
T cd07013 64 IIDGLAASMGSVIAMAGAKGKRFILPN-AMMMIHQPWGGT-LGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHAD 141 (162)
T ss_pred EEEeehhhHHHHHHHcCCCCcEEEecC-EEEEEccCcccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 999999999999999999 6788787 667654332222 1110 011 1112222 12333445
Q ss_pred HhcCcCCCHHHHHHcCcchhc
Q 026127 167 LLRAKKIKGEEALRMGLVEAA 187 (243)
Q Consensus 167 ~l~g~~~~a~eA~~~Glv~~v 187 (243)
+-.+.-++|+||+++||||++
T Consensus 142 ~~~~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 142 LERDTWLSAREAVEYGFADTI 162 (162)
T ss_pred HcCCccccHHHHHHcCCCCcC
Confidence 544555699999999999985
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas |
| >PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.2e-08 Score=80.10 Aligned_cols=142 Identities=16% Similarity=0.168 Sum_probs=97.6
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCe-EEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGS-ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~-~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
++.++..++...|..++..+..+. .+.| =|.|+++.. ...++..|..++.||+
T Consensus 44 I~~~~~~~i~~~L~~l~~~~~~~~I~l~I------NSpGG~v~~--------------------g~~I~d~i~~~~~~v~ 97 (207)
T PRK12553 44 VDDASANDVMAQLLVLESIDPDRDITLYI------NSPGGSVTA--------------------GDAIYDTIQFIRPDVQ 97 (207)
T ss_pred ECHHHHHHHHHHHHHHHhCCCCCCEEEEE------eCCCCcHHH--------------------HHHHHHHHHhcCCCcE
Confidence 788999999999999987543331 3344 344554432 2346667777888999
Q ss_pred EEEccccchHHHHHHHhcc--eeEEecCCceeecccccc-C-cCCC--hhh-------------HHHHHHHhC-CHHHHH
Q 026127 105 AAVNGHAAAAGLTLALSHD--YVIMRRDKGVLYMSEVDI-G-LTLP--DYF-------------AALFRAKVG-SATARR 164 (243)
Q Consensus 105 aav~G~~~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~-G-l~~p--~~g-------------~~~l~~~~g-~~~~a~ 164 (243)
+.+.|.|.+.|..++++|| .|++.++ +.|.+..... | ..-+ +.- ...+.++-| ......
T Consensus 98 t~~~G~aaSaa~lI~~ag~~~~R~~~p~-s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~ 176 (207)
T PRK12553 98 TVCTGQAASAGAVLLAAGTPGKRFALPN-ARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIR 176 (207)
T ss_pred EEEEeehhhHHHHHHHcCCcCcEEECCC-chhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999999999 5899998 7777655432 2 1000 000 112333333 134445
Q ss_pred HHHhcCcCCCHHHHHHcCcchhccCCHhHH
Q 026127 165 DVLLRAKKIKGEEALRMGLVEAAYDSEEQV 194 (243)
Q Consensus 165 ~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l 194 (243)
+++-.+.-++|+||+++||||+|+++.++|
T Consensus 177 ~~~~~~~~lta~EA~e~GliD~I~~~~~dl 206 (207)
T PRK12553 177 KDTDRDKWLTAEEAKDYGLVDQIITSYRDL 206 (207)
T ss_pred HHHhcCccccHHHHHHcCCccEEcCchhhc
Confidence 566678889999999999999999875544
|
|
| >PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.2e-08 Score=81.39 Aligned_cols=138 Identities=16% Similarity=0.110 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCe-EEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGS-ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~-~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
++.++...+...+..++.++..+. .+.+. |.|+++.. ...++..|...+.|++
T Consensus 40 I~~~~~~~i~~~L~~l~~~~~~~~I~l~In------SpGG~v~~--------------------g~~I~d~i~~~~~~v~ 93 (200)
T PRK00277 40 VEDHMANLIVAQLLFLEAEDPDKDIYLYIN------SPGGSVTA--------------------GLAIYDTMQFIKPDVS 93 (200)
T ss_pred ECHHHHHHHHHHHHHhhccCCCCCEEEEEE------CCCCcHHH--------------------HHHHHHHHHhcCCCEE
Confidence 778889999999988886543331 33343 34444432 2335566777888999
Q ss_pred EEEccccchHHHHHHHhcc--eeEEecCCceeeccccccCcC--CChhh--H-----------HHHHHHhC-CHHHHHHH
Q 026127 105 AAVNGHAAAAGLTLALSHD--YVIMRRDKGVLYMSEVDIGLT--LPDYF--A-----------ALFRAKVG-SATARRDV 166 (243)
Q Consensus 105 aav~G~~~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl~--~p~~g--~-----------~~l~~~~g-~~~~a~~l 166 (243)
+.+.|.|.+.|..++++++ .|++.++ +.+.+....-|.. .-+.- + ..+.++-| ......++
T Consensus 94 t~~~G~aaS~a~~I~~ag~~~~r~~~p~-s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~ 172 (200)
T PRK00277 94 TICIGQAASMGAFLLAAGAKGKRFALPN-SRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKD 172 (200)
T ss_pred EEEEeEeccHHHHHHhcCCCCCEEEcCC-ceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 9999999999999998753 5777776 5665543322210 00000 0 11223333 13344455
Q ss_pred HhcCcCCCHHHHHHcCcchhccCC
Q 026127 167 LLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 167 ~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
+-.+.-++|+||+++||||+|+.+
T Consensus 173 ~~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 173 TDRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred hhCCccccHHHHHHcCCccEEeec
Confidence 556677999999999999999976
|
|
| >PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-06 Score=73.57 Aligned_cols=138 Identities=21% Similarity=0.269 Sum_probs=95.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026127 24 HRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPT 103 (243)
Q Consensus 24 N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ 103 (243)
-.++.+-.+...+.++.+++..-+- +-++-+. +++. |.+.+ .......+.+++..+...++|+
T Consensus 77 G~~~~~g~rKa~R~~~lA~~~~lPv-V~lvDtp-Ga~~-g~~aE--------------~~G~~~~ia~~~~~~s~~~VP~ 139 (256)
T PRK12319 77 GQPHPEGYRKALRLMKQAEKFGRPV-VTFINTA-GAYP-GVGAE--------------ERGQGEAIARNLMEMSDLKVPI 139 (256)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCE-EEEEECC-CcCC-CHhHH--------------hccHHHHHHHHHHHHhCCCCCE
Confidence 3678889999999999998765553 3344333 3332 33221 1123556777888889999999
Q ss_pred EEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCc
Q 026127 104 VAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGL 183 (243)
Q Consensus 104 Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Gl 183 (243)
|+.|-|.|.|||......||++++.++ +++++ + .|.+.+..+-+.-.....+.+. ..+++.++++.|+
T Consensus 140 IsVI~G~~~gGgA~a~~~~D~v~m~~~-a~~~v------~-~pe~~a~il~~~~~~a~~aa~~----~~~~a~~l~~~g~ 207 (256)
T PRK12319 140 IAIIIGEGGSGGALALAVADQVWMLEN-TMYAV------L-SPEGFASILWKDGSRATEAAEL----MKITAGELLEMGV 207 (256)
T ss_pred EEEEeCCcCcHHHHHhhcCCEEEEecC-ceEEE------c-CHHHHHHHHhcCcccHHHHHHH----cCCCHHHHHHCCC
Confidence 999999999998888889999999998 66652 1 4555555443322212222222 2789999999999
Q ss_pred chhccCC
Q 026127 184 VEAAYDS 190 (243)
Q Consensus 184 v~~v~~~ 190 (243)
||+|++.
T Consensus 208 iD~ii~e 214 (256)
T PRK12319 208 VDKVIPE 214 (256)
T ss_pred CcEecCC
Confidence 9999975
|
|
| >PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-07 Score=75.78 Aligned_cols=143 Identities=12% Similarity=0.028 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCC-eEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPG-SALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~-~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
++.++...+...+..++..+..+ ..+.|- |.|+++.. ...++..|..++.||+
T Consensus 32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN------SpGG~v~a--------------------g~aI~d~i~~~~~~V~ 85 (197)
T PRK14512 32 INKDLSELFQEKILLLEALDSKKPIFVYID------SEGGDIDA--------------------GFAIFNMIRFVKPKVF 85 (197)
T ss_pred EcHHHHHHHHHHHHHHHhcCCCCCEEEEEE------CCCCCHHH--------------------HHHHHHHHHhCCCCEE
Confidence 77888999999998887622223 134443 45555432 2346667778899999
Q ss_pred EEEccccchHHHHHHHhcce--eEEecCCceeeccccccCcCCChhh-HH---------------HHHHHhC-CHHHHHH
Q 026127 105 AAVNGHAAAAGLTLALSHDY--VIMRRDKGVLYMSEVDIGLTLPDYF-AA---------------LFRAKVG-SATARRD 165 (243)
Q Consensus 105 aav~G~~~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~~p~~g-~~---------------~l~~~~g-~~~~a~~ 165 (243)
+.+.|.|.+.|..++++||- |++.++ +.+.+....-++ ..... .. .+..+-| ......+
T Consensus 86 t~v~G~AaSaaslIl~ag~~~~R~~~p~-s~imiHqP~~~~-~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~ 163 (197)
T PRK14512 86 TIGVGLVASAAALIFLAAKKESRFSLPN-ARYLLHQPLSGF-KGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEK 163 (197)
T ss_pred EEEEeeeHhHHHHHHhcCCcCceeECCC-CcEEEEcCcccc-ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 99999999999999999985 899888 666543332222 11111 00 1112222 1223344
Q ss_pred HHhcCcCCCHHHHHHcCcchhccCCHhHHHH
Q 026127 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAE 196 (243)
Q Consensus 166 l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~ 196 (243)
++-...-++|+||+++||+|+|+++.+++.+
T Consensus 164 ~~~~d~~lta~EA~~yGliD~I~~~~~~l~~ 194 (197)
T PRK14512 164 DTDRDFWLDSSSAVKYGLVFEVVETRLELEE 194 (197)
T ss_pred hhhcCcccCHHHHHHcCCccEeecCcHHhHh
Confidence 4444566999999999999999987566544
|
|
| >cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=98.82 E-value=1e-07 Score=75.56 Aligned_cols=136 Identities=14% Similarity=0.105 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVA 105 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 105 (243)
++.+...++...+..+..++..+ .|++- .=|.|+++..- ..++..|...+.|+++
T Consensus 18 I~~~~~~~i~~~l~~~~~~~~~~-~i~l~----inSpGG~v~~~--------------------~~i~~~l~~~~~~v~t 72 (171)
T cd07017 18 IDDEVANLIIAQLLYLESEDPKK-PIYLY----INSPGGSVTAG--------------------LAIYDTMQYIKPPVST 72 (171)
T ss_pred EcHHHHHHHHHHHHHHHccCCCC-ceEEE----EECCCCCHHHH--------------------HHHHHHHHhcCCCEEE
Confidence 77888999999999999876544 33331 23445544332 2355556677999999
Q ss_pred EEccccchHHHHHHHhcc--eeEEecCCceeeccccccCcCCCh--hh-------------HHHHHHHhCC-HHHHHHHH
Q 026127 106 AVNGHAAAAGLTLALSHD--YVIMRRDKGVLYMSEVDIGLTLPD--YF-------------AALFRAKVGS-ATARRDVL 167 (243)
Q Consensus 106 av~G~~~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl~~p~--~g-------------~~~l~~~~g~-~~~a~~l~ 167 (243)
.+.|.|.++|..+++++| .|++.++ +.|.+.+...+..-+. .- ...+.++.|. .....+++
T Consensus 73 ~~~g~aaS~~~~i~~~g~~~~r~~~~~-a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~ 151 (171)
T cd07017 73 ICLGLAASMGALLLAAGTKGKRYALPN-SRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDT 151 (171)
T ss_pred EEEeEehhHHHHHHHcCCCCCEEEccc-hHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence 999999999999999999 7999998 7787776665542111 00 0112223331 23344556
Q ss_pred hcCcCCCHHHHHHcCcchhc
Q 026127 168 LRAKKIKGEEALRMGLVEAA 187 (243)
Q Consensus 168 l~g~~~~a~eA~~~Glv~~v 187 (243)
-.+.-++++||+++||||+|
T Consensus 152 ~~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 152 DRDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred hCCccccHHHHHHcCCCccC
Confidence 57777999999999999986
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ |
| >PRK11778 putative inner membrane peptidase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.7e-08 Score=82.97 Aligned_cols=165 Identities=20% Similarity=0.165 Sum_probs=94.3
Q ss_pred eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHH
Q 026127 7 HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMV 86 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~ 86 (243)
.+.|+.|.++.+= ...-...+.+++...++.+..+ . .||+.- =|.|+.+.....
T Consensus 89 ~~~v~VI~~~G~I---~~~~~~~l~e~i~a~l~~A~~~---~-aVvLri----dSpGG~v~~s~~--------------- 142 (330)
T PRK11778 89 KPRLFVLDFKGDI---DASEVESLREEITAILAVAKPG---D-EVLLRL----ESPGGVVHGYGL--------------- 142 (330)
T ss_pred CCeEEEEEEEEEE---CCCcchhhHHHHHHHHHhccCC---C-eEEEEE----eCCCCchhHHHH---------------
Confidence 3679999998641 1111223345555555444433 3 555543 344554332110
Q ss_pred HHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccc------------cCcC----------
Q 026127 87 ESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVD------------IGLT---------- 144 (243)
Q Consensus 87 ~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~------------~Gl~---------- 144 (243)
....+.++....||+++.+++.|..||+.++++||.+++.+. +.++.-.+. +|+.
T Consensus 143 --a~~~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~-a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK 219 (330)
T PRK11778 143 --AASQLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPF-AIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYK 219 (330)
T ss_pred --HHHHHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCC-CeEEeeeeeeeccCHHHHHHHCCCceEEEEecCcc
Confidence 011134456778999999999999999999999999999987 545421111 1110
Q ss_pred ---CC-----hhhHHHHH-----------HHhC--CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHH
Q 026127 145 ---LP-----DYFAALFR-----------AKVG--SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRL 201 (243)
Q Consensus 145 ---~p-----~~g~~~l~-----------~~~g--~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~ 201 (243)
-| +-+-..+. ..+- .+....+-+.+|+.|++++|++.||||++... +++...+.+.
T Consensus 220 ~a~~pf~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~-dd~i~~~~~~ 296 (330)
T PRK11778 220 RTLTLFGENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTS-DDYLLELMKE 296 (330)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCH-HHHHHHHHhc
Confidence 00 00000011 1111 00011244678999999999999999999987 6665544443
|
|
| >PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.77 E-value=1e-07 Score=76.34 Aligned_cols=143 Identities=17% Similarity=0.243 Sum_probs=96.5
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCe-EEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHH
Q 026127 12 VLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGS-ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFR 90 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~-~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (243)
+|.|+.| +|.++...+.+.+..+++++..+. .|.+ =|.|+++.. ..
T Consensus 18 ~i~l~g~-------I~~~~~~~~~~~L~~l~~~~~~~~i~i~I------NSpGG~v~~--------------------g~ 64 (182)
T PF00574_consen 18 IIFLNGP-------IDEESANRLISQLLYLENEDKNKPINIYI------NSPGGDVDA--------------------GL 64 (182)
T ss_dssp EEEEESS-------BSHHHHHHHHHHHHHHHHHTSSSEEEEEE------EECEBCHHH--------------------HH
T ss_pred EEEECCc-------cCHHHHHHHHHHHHHHhccCCCceEEEEE------cCCCCccHH--------------------HH
Confidence 4566655 899999999999888854433331 3333 345665543 23
Q ss_pred HHHHHHhcCCCcEEEEEccccchHHHHHHHhcce--eEEecCCceeeccccccCcCCChhhHH-----------------
Q 026127 91 PVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDY--VIMRRDKGVLYMSEVDIGLTLPDYFAA----------------- 151 (243)
Q Consensus 91 ~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~~p~~g~~----------------- 151 (243)
.++..|..++.|+++.+.|.|.+.|..++++||. |++.++ +.|.+.+...+. ++....
T Consensus 65 ~i~~~i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~-s~~m~H~p~~~~--~g~~~~l~~~~~~l~~~~~~~~~ 141 (182)
T PF00574_consen 65 AIYDAIRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPN-SRFMIHQPSTGS--GGNASELREQAKELEKLNERIAN 141 (182)
T ss_dssp HHHHHHHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT--EEEES-CEEEE--EEEHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEEeCccccceehhhhcCCcCceeeeec-CEEEeecceeec--ccccchhHHHHHHHHHHHHHHHH
Confidence 4777788899999999999999999999999999 899998 788887776665 221110
Q ss_pred HHHHHhCC-HHHHHHHHhcCcCCCHHHHHHcCcchhccCC
Q 026127 152 LFRAKVGS-ATARRDVLLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 152 ~l~~~~g~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
.+.++.|. .....+++-...-++|+||+++||||+|+.+
T Consensus 142 ~~~~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 142 IYAERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp HHHHHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred HHHHHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence 11222231 2333444444455899999999999999864
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A .... |
| >CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.8e-06 Score=73.09 Aligned_cols=138 Identities=16% Similarity=0.181 Sum_probs=95.9
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 25 RFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 25 ~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
.++.+-.+...+.++.+++..-+- +-++-+. ++++ |.+-++ ......+.+.+..+....+|+|
T Consensus 134 ~~~p~g~rKa~Rlm~lA~~f~lPI-ItlvDTp-GA~~-G~~AE~--------------~G~~~aiar~l~~~a~~~VP~I 196 (322)
T CHL00198 134 MPSPGGYRKALRLMKHANKFGLPI-LTFIDTP-GAWA-GVKAEK--------------LGQGEAIAVNLREMFSFEVPII 196 (322)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCE-EEEEeCC-CcCc-CHHHHH--------------HhHHHHHHHHHHHHHcCCCCEE
Confidence 678899999999999998765553 3344333 3332 332211 1234566777888889999999
Q ss_pred EEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCcc
Q 026127 105 AAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLV 184 (243)
Q Consensus 105 aav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv 184 (243)
++|-|.|.|||......||++++.++ ++++. ..|.+.+..+-+. ..++.+ +....+++|++++++|+|
T Consensus 197 sVViGeggsGGAlal~~aD~V~m~e~-a~~sV-------isPEg~a~Il~~d---~~~a~~-aA~~~~ita~dL~~~gii 264 (322)
T CHL00198 197 CTIIGEGGSGGALGIGIGDSIMMLEY-AVYTV-------ATPEACAAILWKD---SKKSLD-AAEALKITSEDLKVLGII 264 (322)
T ss_pred EEEeCcccHHHHHhhhcCCeEEEeCC-eEEEe-------cCHHHHHHHHhcc---hhhHHH-HHHHcCCCHHHHHhCCCC
Confidence 99999998888765566999999998 66653 1466665554332 223333 234668999999999999
Q ss_pred hhccCCH
Q 026127 185 EAAYDSE 191 (243)
Q Consensus 185 ~~v~~~~ 191 (243)
|+|+|.+
T Consensus 265 D~ii~Ep 271 (322)
T CHL00198 265 DEIIPEP 271 (322)
T ss_pred eEeccCC
Confidence 9999853
|
|
| >COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-07 Score=82.57 Aligned_cols=164 Identities=20% Similarity=0.235 Sum_probs=101.9
Q ss_pred cEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHH
Q 026127 9 DVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVES 88 (243)
Q Consensus 9 ~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (243)
.|+.|.++.+=....+....-..+.+.+.++.+..|+.++ .|++. .=|.|+....- +.
T Consensus 60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk-~vvL~----inSPGG~v~as-----------------~~ 117 (317)
T COG0616 60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVK-AVVLR----INSPGGSVVAS-----------------EL 117 (317)
T ss_pred EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCc-eEEEE----EECcCCchhHH-----------------HH
Confidence 4777777643100111111224667778888899999999 67763 34566644321 22
Q ss_pred HHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhC----------
Q 026127 89 FRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVG---------- 158 (243)
Q Consensus 89 ~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g---------- 158 (243)
+.+.++++..-. ||++.|++.|..||+.++++||.+||.+. +..+ .+|...-......+..+.|
T Consensus 118 i~~~l~~l~~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~-si~G----SIGVi~~~~~~~~l~~k~Gv~~~~~~ag~ 191 (317)
T COG0616 118 IARALKRLRAKK-PVVVSVGGYAASGGYYIALAADKIVADPS-SITG----SIGVISGAPNFEELLEKLGVEKEVITAGE 191 (317)
T ss_pred HHHHHHHHhhcC-CEEEEECCeecchhhhhhccCCEEEecCC-ceee----eceeEEecCCHHHHHHhcCCceeeeeccc
Confidence 344555555555 99999999999999999999999999987 6555 3332100000111222221
Q ss_pred ---------------------------------------CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHH
Q 026127 159 ---------------------------------------SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASM 199 (243)
Q Consensus 159 ---------------------------------------~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~ 199 (243)
.......-+.+|+.|++++|++.||||++... ++....+.
T Consensus 192 ~k~~~~~~~~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~-~~av~~~~ 270 (317)
T COG0616 192 YKDILSPFRPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGL-DDAVKDAA 270 (317)
T ss_pred cccccCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCH-HHHHHHHH
Confidence 00111246778999999999999999999986 44444444
Q ss_pred HH
Q 026127 200 RL 201 (243)
Q Consensus 200 ~~ 201 (243)
+.
T Consensus 271 ~~ 272 (317)
T COG0616 271 EL 272 (317)
T ss_pred Hh
Confidence 43
|
|
| >PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.9e-06 Score=69.82 Aligned_cols=137 Identities=15% Similarity=0.193 Sum_probs=94.7
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 25 RFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 25 ~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
+++.+-.+...+.++.+++-.-+ +|-+.-.++++. |.+-++ ....+.+.+++.++....+|+|
T Consensus 131 ~~~peg~rKa~R~m~lA~~f~lP--IVtlvDTpGa~~-G~~aE~--------------~G~~~aia~~l~~~a~~~VP~I 193 (319)
T PRK05724 131 MPRPEGYRKALRLMKMAEKFGLP--IITFIDTPGAYP-GIGAEE--------------RGQSEAIARNLREMARLKVPII 193 (319)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCC--EEEEEeCCCCCC-CHHHHh--------------ccHHHHHHHHHHHHhCCCCCEE
Confidence 67889999999999988876554 333333333333 432221 1235567788889999999999
Q ss_pred EEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCcc
Q 026127 105 AAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLV 184 (243)
Q Consensus 105 aav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv 184 (243)
+.|-|.|.|||......||++++.++ ++++ +..|.+.+..+-+.-. .+.+.. ....+++.++++.|+|
T Consensus 194 sVIiGeg~sGGAla~~~aD~v~m~~~-A~~s-------visPEg~a~Il~~~~~---~a~~aa-e~~~ita~~l~~~g~i 261 (319)
T PRK05724 194 CTVIGEGGSGGALAIGVGDRVLMLEY-STYS-------VISPEGCASILWKDAS---KAPEAA-EAMKITAQDLKELGII 261 (319)
T ss_pred EEEeCCccHHHHHHHhccCeeeeecC-ceEe-------ecCHHHHHHHHhcCch---hHHHHH-HHcCCCHHHHHHCCCc
Confidence 99999998888766666999999998 6665 2246655555443222 233333 2556899999999999
Q ss_pred hhccCC
Q 026127 185 EAAYDS 190 (243)
Q Consensus 185 ~~v~~~ 190 (243)
|+|++.
T Consensus 262 D~II~E 267 (319)
T PRK05724 262 DEIIPE 267 (319)
T ss_pred eEeccC
Confidence 999985
|
|
| >TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.8e-05 Score=68.13 Aligned_cols=139 Identities=17% Similarity=0.186 Sum_probs=93.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026127 24 HRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPT 103 (243)
Q Consensus 24 N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ 103 (243)
-+++.+-.+...+.++.+++-.-+- +-++-+. ++++ |.+.++ ......+.+++.++....+|+
T Consensus 130 G~~~p~g~rKa~R~m~lA~~f~iPv-VtlvDTp-Ga~~-g~~aE~--------------~G~~~aia~~l~a~s~~~VP~ 192 (316)
T TIGR00513 130 GMPAPEGYRKALRLMKMAERFKMPI-ITFIDTP-GAYP-GIGAEE--------------RGQSEAIARNLREMARLGVPV 192 (316)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCE-EEEEECC-CCCC-CHHHHH--------------HHHHHHHHHHHHHHHcCCCCE
Confidence 3678899999999999988765542 3333332 3322 332221 123456777888889999999
Q ss_pred EEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCc
Q 026127 104 VAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGL 183 (243)
Q Consensus 104 Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Gl 183 (243)
|++|-|.|.|||......||++++.++ ++++. + .|.+.+..+-+.-.....+.+ -..+++.++++.|+
T Consensus 193 IsVViGeggsGGAla~~~aD~v~m~~~-a~~sV------i-sPEg~a~Il~kd~~~a~~aae----~~~~ta~~l~~~G~ 260 (316)
T TIGR00513 193 ICTVIGEGGSGGALAIGVGDKVNMLEY-STYSV------I-SPEGCAAILWKDASKAPKAAE----AMKITAPDLKELGL 260 (316)
T ss_pred EEEEecccccHHHhhhccCCEEEEecC-ceEEe------c-CHHHHHHHhccchhhHHHHHH----HccCCHHHHHHCCC
Confidence 999999997777765557999999998 66652 2 466655544332211122222 25678999999999
Q ss_pred chhccCCH
Q 026127 184 VEAAYDSE 191 (243)
Q Consensus 184 v~~v~~~~ 191 (243)
||.|+|.+
T Consensus 261 iD~II~ep 268 (316)
T TIGR00513 261 IDSIIPEP 268 (316)
T ss_pred CeEeccCC
Confidence 99999853
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.8e-05 Score=68.82 Aligned_cols=137 Identities=18% Similarity=0.242 Sum_probs=92.6
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 25 RFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 25 ~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
+++.+-.+...+.++.+++..-+- +-++-.. +++ .|.+.++ ......+.+.+..+....+|+|
T Consensus 201 ~~~peGyRKAlR~mklAekf~lPI-VtLVDTp-GA~-pG~~AEe--------------~Gqa~aIAr~l~ams~l~VPiI 263 (431)
T PLN03230 201 MPQPNGYRKALRFMRHAEKFGFPI-LTFVDTP-GAY-AGIKAEE--------------LGQGEAIAFNLREMFGLRVPII 263 (431)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCE-EEEEeCC-CcC-CCHHHHH--------------HhHHHHHHHHHHHHhcCCCCEE
Confidence 678999999999999998765553 3344332 222 3332221 2234567778888999999999
Q ss_pred EEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCcc
Q 026127 105 AAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLV 184 (243)
Q Consensus 105 aav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv 184 (243)
+.|-|.+.+||.....+||++++.++ ++++ +..|.+.+..+-+.-.....+.+ ...++|.++++.|+|
T Consensus 264 SVViGeGgSGGAlalg~aD~VlMle~-A~ys-------VisPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiI 331 (431)
T PLN03230 264 ATVIGEGGSGGALAIGCGNRMLMMEN-AVYY-------VASPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVV 331 (431)
T ss_pred EEEeCCCCcHHHHHhhcCCEEEEecC-CEEE-------ecCHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCC
Confidence 99999996666555567899999998 6554 22465555544322111222222 348999999999999
Q ss_pred hhccCC
Q 026127 185 EAAYDS 190 (243)
Q Consensus 185 ~~v~~~ 190 (243)
|+|++.
T Consensus 332 D~II~E 337 (431)
T PLN03230 332 DEIVPE 337 (431)
T ss_pred eEeccC
Confidence 999975
|
|
| >CHL00028 clpP ATP-dependent Clp protease proteolytic subunit | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.6e-06 Score=67.68 Aligned_cols=138 Identities=10% Similarity=0.032 Sum_probs=92.1
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCe-EEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGS-ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~-~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
+|.++..++...+-.++.++..+- .+.|- |.|+++.. ...++..|...+.||.
T Consensus 39 i~~~~a~~ii~~ll~L~~~~~~~~I~l~IN------SpGG~v~~--------------------g~aIyd~m~~~~~~V~ 92 (200)
T CHL00028 39 VDDEIANQLIGLMVYLSIEDDTKDLYLFIN------SPGGSVIS--------------------GLAIYDTMQFVKPDVH 92 (200)
T ss_pred ecHHHHHHHHHHHHHHhccCCCCCEEEEEe------CCCcchhh--------------------HHHHHHHHHhcCCCEE
Confidence 889999999999999885433231 33443 44444332 1346777888999999
Q ss_pred EEEccccchHHHHHHHhcc--eeEEecCCceeeccccccCcCCChhh-H---------------HHHHHHhC-CHHHHHH
Q 026127 105 AAVNGHAAAAGLTLALSHD--YVIMRRDKGVLYMSEVDIGLTLPDYF-A---------------ALFRAKVG-SATARRD 165 (243)
Q Consensus 105 aav~G~~~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl~~p~~g-~---------------~~l~~~~g-~~~~a~~ 165 (243)
..+.|.|.+.|..|++++| .|++.++ ++|.+.....|....... . ..+.++-| ......+
T Consensus 93 Tv~~G~AaS~aslIl~aG~kg~R~~~p~-s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~ 171 (200)
T CHL00028 93 TICLGLAASMASFILAGGEITKRLAFPH-ARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISE 171 (200)
T ss_pred EEEEEehHHHHHHHHhCCCCCCEEecCC-CeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 9999999999999999999 6999998 778776655442111110 0 01112222 1122234
Q ss_pred HHhcCcCCCHHHHHHcCcchhccCC
Q 026127 166 VLLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 166 l~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
++-...-++|+||+++||||+|+.+
T Consensus 172 ~~~r~~~lta~EA~eyGliD~I~~~ 196 (200)
T CHL00028 172 DMERDVFMSATEAKAYGIVDLVAVN 196 (200)
T ss_pred HhhcCccCCHHHHHHcCCCcEEeec
Confidence 4444555999999999999999976
|
|
| >PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=3e-05 Score=72.74 Aligned_cols=137 Identities=17% Similarity=0.214 Sum_probs=96.3
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 25 RFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 25 ~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
+.+.+-.+...+.++.++...-+- +-++-+.| ++. |...++ ......+.+.+.++....+|+|
T Consensus 222 ~~~peGyRKAlRlmkLAekfgLPI-VtLVDTpG-A~p-G~~AEe--------------~Gq~~aIArnl~amasl~VP~I 284 (762)
T PLN03229 222 MPTPHGYRKALRMMYYADHHGFPI-VTFIDTPG-AYA-DLKSEE--------------LGQGEAIAHNLRTMFGLKVPIV 284 (762)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCE-EEEEECCC-cCC-CchhHH--------------HhHHHHHHHHHHHHhCCCCCEE
Confidence 677888899999998888765553 44443333 332 332222 1235567788888899999999
Q ss_pred EEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCcc
Q 026127 105 AAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLV 184 (243)
Q Consensus 105 aav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv 184 (243)
++|-|.|.|||......||++++.++ +++++ ..|.+++..+-+--. ++.+ +.....++|++.+++|+|
T Consensus 285 SVViGeggSGGAlA~g~aD~VlMle~-A~~sV-------isPEgaAsILwkd~~---~A~e-AAe~lkiTa~dL~~lGii 352 (762)
T PLN03229 285 SIVIGEGGSGGALAIGCANKLLMLEN-AVFYV-------ASPEACAAILWKSAK---AAPK-AAEKLRITAQELCRLQIA 352 (762)
T ss_pred EEEeCCcchHHHHHhhcCCEEEEecC-CeEEe-------cCHHHHHHHHhcCcc---cHHH-HHHHcCCCHHHHHhCCCC
Confidence 99999998888887788999999998 65542 246665555433322 2222 335668999999999999
Q ss_pred hhccCC
Q 026127 185 EAAYDS 190 (243)
Q Consensus 185 ~~v~~~ 190 (243)
|+|+|.
T Consensus 353 D~IIpE 358 (762)
T PLN03229 353 DGIIPE 358 (762)
T ss_pred eeeccC
Confidence 999985
|
|
| >TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.7e-06 Score=67.86 Aligned_cols=138 Identities=16% Similarity=0.111 Sum_probs=89.1
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVA 105 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 105 (243)
++.++..++...+..++.++..+ -|.+. .-|.|+++..- ..++..|..++.|+..
T Consensus 35 I~~~~~~~ii~~L~~l~~~~~~~-~i~l~----InSpGG~v~~g--------------------~~I~d~l~~~~~~v~t 89 (191)
T TIGR00493 35 VNDSVANLIVAQLLFLEAEDPEK-DIYLY----INSPGGSITAG--------------------LAIYDTMQFIKPDVST 89 (191)
T ss_pred EChHHHHHHHHHHHHhhccCCCC-CEEEE----EECCCCCHHHH--------------------HHHHHHHHhcCCCEEE
Confidence 67788888999888888755444 33331 13445554321 2355566667778888
Q ss_pred EEccccchHHHHHHHhcc--eeEEecCCceeeccccccCcC--CChhh--H-----------HHHHHHhC-CHHHHHHHH
Q 026127 106 AVNGHAAAAGLTLALSHD--YVIMRRDKGVLYMSEVDIGLT--LPDYF--A-----------ALFRAKVG-SATARRDVL 167 (243)
Q Consensus 106 av~G~~~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl~--~p~~g--~-----------~~l~~~~g-~~~~a~~l~ 167 (243)
.+.|.|.+.|..+++++| .|++.++ +.+.+.+..-|.. ..+.- . ..+.++-| ......+++
T Consensus 90 ~~~G~AaSaaslI~~aG~~~~r~~~p~-s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~ 168 (191)
T TIGR00493 90 ICIGQAASMGAFLLSAGAKGKRFSLPN-SRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDT 168 (191)
T ss_pred EEEEeeccHHHHHHhcCCCCcEEecCC-ceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence 888999999999988765 6999998 7787755433320 11111 0 11223333 134445556
Q ss_pred hcCcCCCHHHHHHcCcchhccC
Q 026127 168 LRAKKIKGEEALRMGLVEAAYD 189 (243)
Q Consensus 168 l~g~~~~a~eA~~~Glv~~v~~ 189 (243)
-.+.-++|+||+++||+|+|+.
T Consensus 169 ~~~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 169 ERDFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred hCCccCcHHHHHHcCCccEEec
Confidence 6667799999999999999875
|
This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model. |
| >PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.7e-05 Score=62.93 Aligned_cols=138 Identities=16% Similarity=0.083 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCe-EEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGS-ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~-~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
++.++..++...|..++.+...+- .+.| -|.|+++.. ...++..|...+.||.
T Consensus 34 i~~~~a~~ii~~Ll~l~~~~~~~~I~l~I------NSpGG~v~~--------------------g~aIyd~m~~~~~~V~ 87 (196)
T PRK12551 34 VTSDSANRIVAQLLFLEAEDPEKDIYLYI------NSPGGSVYD--------------------GLGIFDTMQHVKPDVH 87 (196)
T ss_pred ecHHHHHHHHHHHHHhhccCCCCCEEEEE------eCCCcchhh--------------------HHHHHHHHHhcCCCEE
Confidence 788999999999998885432231 3333 344554432 1246667778889999
Q ss_pred EEEccccchHHHHHHHhcce--eEEecCCceeeccccccCcC--CChhh--HH-----------HHHHHhCC-HHHHHHH
Q 026127 105 AAVNGHAAAAGLTLALSHDY--VIMRRDKGVLYMSEVDIGLT--LPDYF--AA-----------LFRAKVGS-ATARRDV 166 (243)
Q Consensus 105 aav~G~~~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~--~p~~g--~~-----------~l~~~~g~-~~~a~~l 166 (243)
..+.|.|.+.|..|++++|. |++.++ +++.+....-|.. ..+.- .. .+.++-|. .....++
T Consensus 88 t~~~G~AaS~AslIl~aG~~~~R~~~p~-a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~ 166 (196)
T PRK12551 88 TVCVGLAASMGAFLLCAGAKGKRSSLQH-SRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQED 166 (196)
T ss_pred EEEEEEehhHHHHHHhCCCCCceecCCC-CEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 99999999999999999985 888888 7776555432220 11110 00 12223331 1222344
Q ss_pred HhcCcCCCHHHHHHcCcchhccCC
Q 026127 167 LLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 167 ~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
+-...-++|+||+++||||+|+++
T Consensus 167 ~~rd~~msa~EA~eyGliD~I~~~ 190 (196)
T PRK12551 167 TDRDFFMSPSEAVEYGLIDLVIDK 190 (196)
T ss_pred hhcCcCCCHHHHHHcCCCcEEecc
Confidence 444455999999999999999975
|
|
| >PF01343 Peptidase_S49: Peptidase family S49 peptidase classification | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.9e-07 Score=71.74 Aligned_cols=101 Identities=17% Similarity=0.219 Sum_probs=62.1
Q ss_pred hcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccc------------cCcC-------------CCh--h-
Q 026127 97 MDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVD------------IGLT-------------LPD--Y- 148 (243)
Q Consensus 97 ~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~------------~Gl~-------------~p~--~- 148 (243)
.+..|||+|.++|.+..+++.++.+||-+++.+. +.++...+. +|+- .|. .
T Consensus 3 ~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~-s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s 81 (154)
T PF01343_consen 3 KASGKPVVAYAEGYAASGAYYLASAADEIYANPS-SSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS 81 (154)
T ss_dssp HHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT--EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred cccCCeEEEEECCcchhHHHHHHHcCCEEEecCC-CEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence 4679999999999999999999999999999886 444432111 1110 010 0
Q ss_pred --hHHHHHH-----------------HhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHH
Q 026127 149 --FAALFRA-----------------KVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRL 201 (243)
Q Consensus 149 --g~~~l~~-----------------~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~ 201 (243)
.-..+.+ .+. ... .+-+..|..|++++|++.||||++-.. +++.+.+.+.
T Consensus 82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~-~~~-v~~~~~~~~~~~~~A~~~GLiD~i~~~-~~~~~~l~~~ 150 (154)
T PF01343_consen 82 EEERENLQELLDELYDQFVNDVAEGRGLS-PDD-VEEIADGGVFTAQQALELGLIDEIGTF-DEAIARLAKL 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHH-HHCHHCCHEEEHHHHHHTTSSSEETSH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCC-HHH-HHHHHhhccccHHHHHHcCchhhcCCH-HHHHHHHHHH
Confidence 0001111 111 112 233578999999999999999999875 6666665544
|
; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A. |
| >PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=3e-05 Score=63.72 Aligned_cols=137 Identities=10% Similarity=0.005 Sum_probs=87.0
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCC-eEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPG-SALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~-~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
+|.++...+...+..++..+.-+ ..+.|-+ .|+++.. ...++..|...+.||.
T Consensus 63 Idd~~a~~i~aqLl~L~~~~~~~~I~lyINS------pGGsv~a--------------------GlaIyd~m~~~~~~V~ 116 (221)
T PRK14514 63 IDDYTANTIQAQLLYLDSVDPGKDISIYINS------PGGSVYA--------------------GLGIYDTMQFISSDVA 116 (221)
T ss_pred EcHHHHHHHHHHHHHHhccCCCCCEEEEEEC------CCcchhh--------------------HHHHHHHHHhcCCCEE
Confidence 67888888888777776432212 0344433 3443322 1236677788899999
Q ss_pred EEEccccchHHHHHHHhcce--eEEecCCceeeccccccCcCCChhh-H----H-----------HHHHHhC-CHHHHHH
Q 026127 105 AAVNGHAAAAGLTLALSHDY--VIMRRDKGVLYMSEVDIGLTLPDYF-A----A-----------LFRAKVG-SATARRD 165 (243)
Q Consensus 105 aav~G~~~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~~p~~g-~----~-----------~l~~~~g-~~~~a~~ 165 (243)
..+.|.|.+.|..|++++|. |++.++ +.+.+....-|. ..... . . .+.++-| ......+
T Consensus 117 tv~~G~AAS~AslIl~aG~~gkR~~~pn-a~iMiHqP~~~~-~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~ 194 (221)
T PRK14514 117 TICTGMAASMASVLLVAGTKGKRSALPH-SRVMIHQPLGGA-QGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWA 194 (221)
T ss_pred EEEEEEehhHHHHHHhcCCCCceeeCCC-CEEEeccCCccc-CCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 99999999999999999996 889998 777655543332 11111 0 0 0112233 1122234
Q ss_pred HHhcCcCCCHHHHHHcCcchhccCC
Q 026127 166 VLLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 166 l~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
++-...-++|+||+++||||+|+..
T Consensus 195 ~~~rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 195 DSDRDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred HhhcCccCCHHHHHHcCCccEEeec
Confidence 4444555999999999999999864
|
|
| >TIGR03133 malonate_beta malonate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00037 Score=59.11 Aligned_cols=138 Identities=20% Similarity=0.232 Sum_probs=85.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-----cCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHh
Q 026127 23 EHRFGPPAIDSILSAIAKAKA-----EATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMM 97 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~-----d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 97 (243)
.-++....-+.+..+++.+.+ .+-+ +|.+..+|+ ..+.+-. ..+..+.+.+.. +..+.
T Consensus 72 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~P--vV~l~dSgG-----aRlqEg~---------~~L~~~a~i~~~-~~~ls 134 (274)
T TIGR03133 72 GGSVGEVHGAKIVGALRLAIEDNRKGQPTA--VVLLLDTGG-----VRLQEAN---------AGLIAIAEIMRA-ILDAR 134 (274)
T ss_pred CcCCCHHHHHHHHHHHHHHHhhhhccCCCC--EEEEEcCCC-----cChhhhH---------HHHHHHHHHHHH-HHHHh
Confidence 457888888999999988876 2222 444443332 3332211 111122222222 33344
Q ss_pred cCCCcEEEEEccc--cchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCC-HHHHHHHHhcCcCCC
Q 026127 98 DLPMPTVAAVNGH--AAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGS-ATARRDVLLRAKKIK 174 (243)
Q Consensus 98 ~~~kp~Iaav~G~--~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~-~~~a~~l~l~g~~~~ 174 (243)
.. .|+|+.+-|+ |.||+..++.+||++|++++ ++++ +.-|.. +....|. .-..++-.+..+.+.
T Consensus 135 ~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~-a~i~-------~aGP~V----Ie~~~G~e~~~~~d~~l~~~~lG 201 (274)
T TIGR03133 135 AA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEE-GRLG-------LSGPEV----IEQEAGVEEFDSRDRALVWRTTG 201 (274)
T ss_pred CC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCC-cEEe-------ccCHHH----HHHhcCCCccCHHHhcccccccc
Confidence 44 9999999999 89999999999999999987 6554 322332 2223331 011233344556677
Q ss_pred HHHHHHcCcchhccCC
Q 026127 175 GEEALRMGLVEAAYDS 190 (243)
Q Consensus 175 a~eA~~~Glv~~v~~~ 190 (243)
+......|++|.++++
T Consensus 202 G~~~~~sG~~D~~v~d 217 (274)
T TIGR03133 202 GKHRFLSGDADVLVED 217 (274)
T ss_pred hHhHhhcccceEEeCC
Confidence 7788889999999987
|
Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase. |
| >PRK05654 acetyl-CoA carboxylase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00035 Score=59.89 Aligned_cols=165 Identities=15% Similarity=0.187 Sum_probs=101.3
Q ss_pred eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHH
Q 026127 7 HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMV 86 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~ 86 (243)
++.-..|.-|.+. -..-+++....+.+.++++.+.+..-+ +|.+...|+ ....+ . ...+.+..
T Consensus 119 ~G~~V~v~a~D~~-f~gGS~g~~~~eKi~r~~e~A~~~~lP--lV~l~dsgG-----armqE---g------i~sL~~~a 181 (292)
T PRK05654 119 EGMPVVLAVMDFS-FMGGSMGSVVGEKIVRAVERAIEEKCP--LVIFSASGG-----ARMQE---G------LLSLMQMA 181 (292)
T ss_pred CCEEEEEEEEecc-cccCCccHHHHHHHHHHHHHHHHcCCC--EEEEEcCCC-----cchhh---h------hhHHHhHH
Confidence 4433444455552 124689999999999999999877554 455554442 22221 1 11111111
Q ss_pred HHHHHHHHHHhcCCCcEEEEEccccchHHH-HHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHH
Q 026127 87 ESFRPVVAAMMDLPMPTVAAVNGHAAAAGL-TLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165 (243)
Q Consensus 87 ~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~-~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~ 165 (243)
.....+.++.....|.|+++-|+|.||+. .+++.+|++++.++ +.+++ .-|. .+.+.++ ..
T Consensus 182 -k~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~-A~ig~-------aGpr----vie~~~~-e~---- 243 (292)
T PRK05654 182 -KTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPK-ALIGF-------AGPR----VIEQTVR-EK---- 243 (292)
T ss_pred -HHHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecC-cEEEe-------cCHH----HHHhhhh-hh----
Confidence 22334445567789999999999999965 56778999999876 65543 2232 1222222 11
Q ss_pred HHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCC
Q 026127 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRK 209 (243)
Q Consensus 166 l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~ 209 (243)
+ .-+.=+++-+.+.|+||.|+++ .++.+...++.+.+...+
T Consensus 244 l--pe~~~~ae~~~~~G~vD~Vv~~-~e~r~~l~~~L~~~~~~~ 284 (292)
T PRK05654 244 L--PEGFQRAEFLLEHGAIDMIVHR-RELRDTLASLLALHTKQP 284 (292)
T ss_pred h--hhhhcCHHHHHhCCCCcEEECH-HHHHHHHHHHHHHHhcCC
Confidence 1 1112256777899999999998 788888888877765543
|
|
| >TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00029 Score=58.64 Aligned_cols=154 Identities=14% Similarity=0.122 Sum_probs=89.2
Q ss_pred CcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHH-HhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHH
Q 026127 8 GDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKA-KAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMV 86 (243)
Q Consensus 8 ~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~-~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~ 86 (243)
+.-..|.=|.| . ..++.+-.......+... +.+..+= +|.+.-. +.|-.|..-+ .....
T Consensus 31 G~~V~vIa~~~---~-~~~g~~~~~k~A~~v~~~~d~~f~~P-Iv~lvDt-pG~~~g~~aE--------------~~G~~ 90 (238)
T TIGR03134 31 GGKVTVIGVVP---D-AEVGLDEALALAQAVLDVIEADDKRP-IVVLVDT-PSQAYGRREE--------------LLGIN 90 (238)
T ss_pred CEEEEEEEECC---C-CcCChHHHHHHHHHHHHHHHhcCCCC-EEEEEeC-CCCCCCHHHH--------------HHHHH
Confidence 43334444445 2 268877777888888775 4445543 4444332 3344444222 22334
Q ss_pred HHHHHHHHHHh---cCCCcEEEEEccccchHHHH-HHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHH
Q 026127 87 ESFRPVVAAMM---DLPMPTVAAVNGHAAAAGLT-LALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATA 162 (243)
Q Consensus 87 ~~~~~~~~~l~---~~~kp~Iaav~G~~~G~G~~-la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~ 162 (243)
..+.+++.++. ..+.|+|+.|-|.+.|||+. +.+.+|.++|.++ +.++ ...|...+..+-+-.. .
T Consensus 91 ~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~-A~i~-------vm~~e~aa~I~~~~~~---~ 159 (238)
T TIGR03134 91 QALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPG-AMVH-------VMDLESMARVTKRSVE---E 159 (238)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCC-cEEE-------ecCHHHHHHHHccCHh---H
Confidence 44455555555 55699999999999998874 4334788888877 5554 3134443333332222 2
Q ss_pred HHHHHhcC--cCCCHHHHHHcCcchhccCCHh
Q 026127 163 RRDVLLRA--KKIKGEEALRMGLVEAAYDSEE 192 (243)
Q Consensus 163 a~~l~l~g--~~~~a~eA~~~Glv~~v~~~~~ 192 (243)
+.++.-.- ...+.+.+.++|+||.|++..+
T Consensus 160 ~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~~ 191 (238)
T TIGR03134 160 LEALAKSSPVFAPGIENFVKLGGVHALLDVAD 191 (238)
T ss_pred HHHHHHhhhhhccCHHHHHhCCCccEEeCCCC
Confidence 33333221 2467788999999999998633
|
Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity. |
| >PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.8e-05 Score=60.78 Aligned_cols=139 Identities=13% Similarity=0.169 Sum_probs=89.9
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCC-eEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026127 25 RFGPPAIDSILSAIAKAKAEATPG-SALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPT 103 (243)
Q Consensus 25 ~l~~~~~~~l~~~l~~~~~d~~v~-~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ 103 (243)
.++.++...+...+-.++..+.-+ ..+.|- |.|+|+.. ...++..|...+-||
T Consensus 35 ~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~IN------SpGG~v~~--------------------GlaIyd~m~~~~~~V 88 (201)
T PRK14513 35 PIESQMANTIVAQLLLLDSQNPEQEIQMYIN------CPGGEVYA--------------------GLAIYDTMRYIKAPV 88 (201)
T ss_pred EEcHHHHHHHHHHHHHhhccCCCCCEEEEEE------CCCCchhh--------------------HHHHHHHHHhcCCCE
Confidence 378888888888887777533212 134443 44454432 134677778889999
Q ss_pred EEEEccccchHHHHHHHhcce--eEEecCCceeeccccccCcC--CChhhH-------------HHHHHHhC-CHHHHHH
Q 026127 104 VAAVNGHAAAAGLTLALSHDY--VIMRRDKGVLYMSEVDIGLT--LPDYFA-------------ALFRAKVG-SATARRD 165 (243)
Q Consensus 104 Iaav~G~~~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~--~p~~g~-------------~~l~~~~g-~~~~a~~ 165 (243)
...+.|.|.+.|..|++++|- |++.++ +++-+.....|.. .++.-. ..+.++-| ......+
T Consensus 89 ~Ti~~G~AaS~As~il~aG~kgkR~~~pn-a~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~ 167 (201)
T PRK14513 89 STICVGIAMSMGSVLLMAGDKGKRMALPN-SRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLR 167 (201)
T ss_pred EEEEEeeehhhHHHHHhcCCCCcEEecCC-eEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 999999999999999999995 899998 7776655543431 111100 01112223 0122234
Q ss_pred HHhcCcCCCHHHHHHcCcchhccCC
Q 026127 166 VLLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 166 l~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
++-...-++|+||+++||||+|+++
T Consensus 168 ~~~rd~~msa~EA~eyGliD~I~~~ 192 (201)
T PRK14513 168 DMERDYFMSPEEAKAYGLIDSVIEP 192 (201)
T ss_pred HhccCcccCHHHHHHcCCCcEEecc
Confidence 4444455999999999999999975
|
|
| >TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00031 Score=59.96 Aligned_cols=147 Identities=17% Similarity=0.224 Sum_probs=94.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026127 23 EHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMP 102 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 102 (243)
.-+++....+.+.++++.+.+..-+ +|.++..|++ -. ++. ...+.+.. .....+.++.....|
T Consensus 133 gGSmg~~~geKi~r~~e~A~~~~lP--lV~l~dSgGa-----Rm---qEg------~~sL~~~a-k~~~~~~~~~~~~vP 195 (285)
T TIGR00515 133 GGSMGSVVGEKFVRAIEKALEDNCP--LIIFSASGGA-----RM---QEA------LLSLMQMA-KTSAALAKMSERGLP 195 (285)
T ss_pred CCCccHHHHHHHHHHHHHHHHcCCC--EEEEEcCCCc-----cc---ccc------hhHHHhHH-HHHHHHHHHHcCCCC
Confidence 4589999999999999999876554 5555554433 11 111 11111222 122344456677899
Q ss_pred EEEEEccccchHHH-HHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCC-CHHHHHH
Q 026127 103 TVAAVNGHAAAAGL-TLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKI-KGEEALR 180 (243)
Q Consensus 103 ~Iaav~G~~~G~G~-~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~-~a~eA~~ 180 (243)
.|+++-|+|.||+. .+++.+|++++.++ +.+++ .-|. .+.+.++ ... . +.+ +++-+.+
T Consensus 196 ~IsVv~gpt~GG~aas~a~~~D~iia~p~-A~ig~-------aGpr----Vie~ti~-e~l------p-e~~q~ae~~~~ 255 (285)
T TIGR00515 196 YISVLTDPTTGGVSASFAMLGDLNIAEPK-ALIGF-------AGPR----VIEQTVR-EKL------P-EGFQTSEFLLE 255 (285)
T ss_pred EEEEEeCCcchHHHHHHHhCCCEEEEECC-eEEEc-------CCHH----HHHHHhc-Ccc------c-hhcCCHHHHHh
Confidence 99999999999965 56679999999887 65543 2232 1223333 111 1 223 5666778
Q ss_pred cCcchhccCCHhHHHHHHHHHHHHHhc
Q 026127 181 MGLVEAAYDSEEQVAEASMRLAKQLAG 207 (243)
Q Consensus 181 ~Glv~~v~~~~~~l~~~a~~~a~~l~~ 207 (243)
.|+||.|+++ .++.+...++.+.+..
T Consensus 256 ~G~vD~iv~~-~~~r~~l~~~L~~~~~ 281 (285)
T TIGR00515 256 HGAIDMIVHR-PEMKKTLASLLAKLQN 281 (285)
T ss_pred CCCCcEEECc-HHHHHHHHHHHHHHhh
Confidence 9999999998 7788777777765543
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.6e-05 Score=72.28 Aligned_cols=84 Identities=18% Similarity=0.162 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEc
Q 026127 29 PAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVN 108 (243)
Q Consensus 29 ~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~ 108 (243)
..+.++.++++++.+|+.|+ .||+.-.. +.|..+..+. .+.+.+..+....|||||..+
T Consensus 76 ~~l~~i~~~i~~A~~D~~Ik-gIvL~i~~---~~g~~~~~~~-----------------ei~~ai~~fk~sgKpVvA~~~ 134 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIE-GLVFDLSN---FSGWDSPHLV-----------------EIGSALSEFKDSGKPVYAYGT 134 (584)
T ss_pred cCHHHHHHHHHHHhcCCCce-EEEEEccC---CCCCCHHHHH-----------------HHHHHHHHHHhcCCeEEEEEc
Confidence 35789999999999999999 88887642 2244333221 234445555667999999888
Q ss_pred cccchHHHHHHHhcceeEEecCCceee
Q 026127 109 GHAAAAGLTLALSHDYVIMRRDKGVLY 135 (243)
Q Consensus 109 G~~~G~G~~la~~~D~~ia~~~~~~f~ 135 (243)
+.+ -+|+-++.+||-+++.+. +.++
T Consensus 135 ~~~-s~~YylAs~AD~I~~~p~-G~v~ 159 (584)
T TIGR00705 135 NYS-QGQYYLASFADEIILNPM-GSVD 159 (584)
T ss_pred ccc-chhhhhhhhCCEEEECCC-ceEE
Confidence 775 678999999999999986 4443
|
E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. |
| >COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00017 Score=64.24 Aligned_cols=158 Identities=21% Similarity=0.331 Sum_probs=110.2
Q ss_pred eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHH
Q 026127 7 HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMV 86 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~ 86 (243)
++.|..+.++.. ++..+...+.+.++.++++..- ++|+.=+ ..|+ ..
T Consensus 25 ~~~v~vi~i~g~-------I~~~s~~~l~r~l~~A~~~~a~--~vvl~ld----TPGG--------------------l~ 71 (436)
T COG1030 25 EKKVYVIEIDGA-------IDPASADYLQRALQSAEEENAA--AVVLELD----TPGG--------------------LL 71 (436)
T ss_pred CCeEEEEEecCc-------cCHHHHHHHHHHHHHHHhCCCc--EEEEEec----CCCc--------------------hH
Confidence 456788888754 9999999999999999987642 4444211 1122 23
Q ss_pred HHHHHHHHHHhcCCCcEEEEEc---cccchHHHHHHHhcceeEEecCCceeecc-ccccCcCCC-hhh-H-H------HH
Q 026127 87 ESFRPVVAAMMDLPMPTVAAVN---GHAAAAGLTLALSHDYVIMRRDKGVLYMS-EVDIGLTLP-DYF-A-A------LF 153 (243)
Q Consensus 87 ~~~~~~~~~l~~~~kp~Iaav~---G~~~G~G~~la~~~D~~ia~~~~~~f~~p-e~~~Gl~~p-~~g-~-~------~l 153 (243)
+.++++++++.+.|.|++..+. +.|..+|.-++++||+..+++. +.++-. .+..|-+.+ ... . . -+
T Consensus 72 ~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPg-T~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~ 150 (436)
T COG1030 72 DSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPG-TNIGAATPIAGGGTSAKEANTTNAAVAYIRSL 150 (436)
T ss_pred HHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCC-CcccccceecCCCCCccchhhHHHHHHHHHHH
Confidence 4567899999999999888885 4699999999999999999998 666532 222331111 111 0 1 12
Q ss_pred HHHhC-CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHH
Q 026127 154 RAKVG-SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEAS 198 (243)
Q Consensus 154 ~~~~g-~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a 198 (243)
.+.-| +...+.+++.-...++++||++.|++|-+..+..|+....
T Consensus 151 A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~~~ell~~~ 196 (436)
T COG1030 151 AEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIARDLNELLKKL 196 (436)
T ss_pred HHHcCCChHHHHHHhhhccCCChhHHHhcCccccccCCHHHHHHHc
Confidence 22323 3566778888899999999999999999998855554443
|
|
| >PRK07189 malonate decarboxylase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0011 Score=56.86 Aligned_cols=140 Identities=20% Similarity=0.266 Sum_probs=81.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcC----CCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhc
Q 026127 23 EHRFGPPAIDSILSAIAKAKAEA----TPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMD 98 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~d~----~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 98 (243)
.-++.....+.+..+++.+.++. .+- +|++..+|+ ..+.+-. ..+..+.+.+.. +..+..
T Consensus 81 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~P-vV~l~dSGG-----aRlqEg~---------~~L~~~a~i~~~-~~~ls~ 144 (301)
T PRK07189 81 GGSVGEVHGAKLAGALELAAEDNRNGIPTA-VLLLFETGG-----VRLQEAN---------AGLAAIAEIMRA-IVDLRA 144 (301)
T ss_pred CcCcCHHHHHHHHHHHHHHHHhCCCCCCCC-EEEEecCCC-----cCccchH---------HHHHHHHHHHHH-HHHHhC
Confidence 45888999999999999988765 123 444444333 2232211 111122222222 233344
Q ss_pred CCCcEEEEEccc--cchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCC-HHHHHHHHhcCcCCCH
Q 026127 99 LPMPTVAAVNGH--AAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGS-ATARRDVLLRAKKIKG 175 (243)
Q Consensus 99 ~~kp~Iaav~G~--~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~-~~~a~~l~l~g~~~~a 175 (243)
. +|+|+.+-|+ |+||+...+.+||++|++++ ++++ +.-|.. +....|. .-..++--+-.+.+.+
T Consensus 145 ~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~-a~ig-------laGP~V----Ie~~~G~e~~d~~d~~~vw~~lGG 211 (301)
T PRK07189 145 A-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEE-GRLG-------LSGPEV----IEQEAGVEEFDSRDRALVWRTTGG 211 (301)
T ss_pred C-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECC-cEEe-------ccCHHH----HHHhcCCcccCHHHhcccccccCc
Confidence 4 9999999999 99999999999999999987 6554 322322 1222220 0111221222222333
Q ss_pred HHHHHcCcchhccCCH
Q 026127 176 EEALRMGLVEAAYDSE 191 (243)
Q Consensus 176 ~eA~~~Glv~~v~~~~ 191 (243)
......|.+|.++++.
T Consensus 212 ~h~~~sG~~D~~v~dd 227 (301)
T PRK07189 212 KHRYLSGLADALVDDD 227 (301)
T ss_pred ceeeecccceEEeCCH
Confidence 4555699999999873
|
|
| >PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.2e-05 Score=64.04 Aligned_cols=96 Identities=23% Similarity=0.224 Sum_probs=77.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026127 24 HRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPT 103 (243)
Q Consensus 24 N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ 103 (243)
+-++.+..+++.++++...++..+ .+++ -+.|+++.. -.++.+.+.+++.|+
T Consensus 70 ~~I~i~dse~v~raI~~~~~~~~I--dLii------~TpGG~v~A--------------------A~~I~~~l~~~~~~v 121 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIREAPKDKPI--DLII------HTPGGLVDA--------------------AEQIARALREHPAKV 121 (285)
T ss_pred eeEcHhhHHHHHHHHHhcCCCCce--EEEE------ECCCCcHHH--------------------HHHHHHHHHhCCCCE
Confidence 458888999999999988876654 3444 245554442 234667788899999
Q ss_pred EEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh
Q 026127 104 VAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF 149 (243)
Q Consensus 104 Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g 149 (243)
++.|+..|..+|..++++||-+|+.++ +.++--+.++|- .|..+
T Consensus 122 ~v~VP~~A~SAGTlIALaADeIvM~p~-a~LGpiDPqi~~-~pA~s 165 (285)
T PF01972_consen 122 TVIVPHYAMSAGTLIALAADEIVMGPG-AVLGPIDPQIGQ-YPAAS 165 (285)
T ss_pred EEEECcccccHHHHHHHhCCeEEECCC-CccCCCCccccC-CChHH
Confidence 999999999999999999999999998 789988889998 68655
|
The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane |
| >TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.001 Score=61.55 Aligned_cols=174 Identities=15% Similarity=0.107 Sum_probs=106.9
Q ss_pred eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHH
Q 026127 7 HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMV 86 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~ 86 (243)
+|.-.-|.-|+|. ...-+++.+..+...+.++.+++..-+ +|.+...++ |..|.+-+ .....
T Consensus 313 ~G~~V~vvAnd~~-~~~G~~~~~~~~K~~r~i~~a~~~~lP--lV~lvDs~G-~~~g~~~E--------------~~g~~ 374 (512)
T TIGR01117 313 NGQSVGIIANQPK-VMAGCLDIDSSDKIARFIRFCDAFNIP--IVTFVDVPG-FLPGVNQE--------------YGGII 374 (512)
T ss_pred CCEEEEEEEeccc-cccCCCCHHHHHHHHHHHHHHHHcCCC--EEEEEeCcC-ccccHHHH--------------HHHHH
Confidence 3433445555552 123479999999999999998876554 344433322 55554322 22234
Q ss_pred HHHHHHHHHHhcCCCcEEEEEccccchHHHHHHH----hcceeEEecCCceeeccccccCcCCChhhHHHHHH-Hh---C
Q 026127 87 ESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLAL----SHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRA-KV---G 158 (243)
Q Consensus 87 ~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~----~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~-~~---g 158 (243)
....+++.++.+..+|.|+.|-|.+.|+|+.-+. .+|++++.++ +.++ +..|...+..+.+ .+ .
T Consensus 375 ~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~-a~~~-------v~~pe~a~~i~~~~~l~~~~ 446 (512)
T TIGR01117 375 RHGAKVLYAYSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPT-AEIA-------VMGPAGAANIIFRKDIKEAK 446 (512)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCC-CeEe-------ecCHHHHHHHHhhhhccccc
Confidence 4566778888899999999999999888664443 2899999888 6554 3234444433322 11 1
Q ss_pred CHHHHHHHH---hcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhc
Q 026127 159 SATARRDVL---LRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAG 207 (243)
Q Consensus 159 ~~~~a~~l~---l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~ 207 (243)
....++... ..-+..++..+.+.|+||.|+++ .+.........+.+..
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~a~~g~vD~VI~P-~~tR~~l~~~l~~~~~ 497 (512)
T TIGR01117 447 DPAATRKQKIAEYREEFANPYKAAARGYVDDVIEP-KQTRPKIVNALAMLES 497 (512)
T ss_pred CHHHHHHHHHHHHHHhhcCHHHHHhcCCCCeeECh-HHHHHHHHHHHHHHhc
Confidence 011111111 12234578899999999999998 6676666666555443
|
This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. |
| >CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0023 Score=54.72 Aligned_cols=146 Identities=12% Similarity=0.098 Sum_probs=86.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026127 23 EHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMP 102 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 102 (243)
.-++....-+.+.++++.+.+..-+ +|+++.+|+. .+.+-. ..+.++.+....+......-..|
T Consensus 146 gGSmG~v~geKi~ra~e~A~~~rlP--lV~l~~SGGA-----RmQEg~---------~sL~qmak~saa~~~~~~~~~vP 209 (296)
T CHL00174 146 GGSMGSVVGEKITRLIEYATNESLP--LIIVCASGGA-----RMQEGS---------LSLMQMAKISSALYDYQSNKKLF 209 (296)
T ss_pred ccCcCHHHHHHHHHHHHHHHHcCCC--EEEEECCCCc-----cccccc---------hhhhhhHHHHHHHHHHHHcCCCC
Confidence 4688999999999999999877654 4555543332 222110 01111111111122112356799
Q ss_pred EEEEEccccchHHHHH-HHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHc
Q 026127 103 TVAAVNGHAAAAGLTL-ALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRM 181 (243)
Q Consensus 103 ~Iaav~G~~~G~G~~l-a~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~ 181 (243)
.|+++.|+|.||+... ++.||++|+.++ +.+ |+.-|.. +...+| .. +.-.-=+|+-.++.
T Consensus 210 ~Isvl~gPt~GG~aas~a~l~Diiiae~~-A~I-------gfAGPrV----Ie~t~g-e~------lpe~fq~ae~l~~~ 270 (296)
T CHL00174 210 YISILTSPTTGGVTASFGMLGDIIIAEPN-AYI-------AFAGKRV----IEQTLN-KT------VPEGSQAAEYLFDK 270 (296)
T ss_pred EEEEEcCCCchHHHHHHHHcccEEEEeCC-eEE-------EeeCHHH----HHHhcC-Cc------CCcccccHHHHHhC
Confidence 9999999999988755 777999998554 544 3322322 222222 10 11111246667899
Q ss_pred CcchhccCCHhHHHHHHHHHHHH
Q 026127 182 GLVEAAYDSEEQVAEASMRLAKQ 204 (243)
Q Consensus 182 Glv~~v~~~~~~l~~~a~~~a~~ 204 (243)
|+||.||+. .++.+...++.+-
T Consensus 271 G~vD~iV~r-~~lr~~l~~ll~~ 292 (296)
T CHL00174 271 GLFDLIVPR-NLLKGVLSELFQL 292 (296)
T ss_pred cCceEEEcH-HHHHHHHHHHHHh
Confidence 999999998 6787776666543
|
|
| >PRK10949 protease 4; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00027 Score=66.63 Aligned_cols=83 Identities=16% Similarity=0.162 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Q 026127 30 AIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNG 109 (243)
Q Consensus 30 ~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G 109 (243)
.+.++.++++++.+|+.|+ .||+.-.+. .|..+..+ +.+.+.+..+....|||||..+.
T Consensus 96 ~l~div~~i~~Aa~D~rIk-givL~i~s~---gG~~~a~~-----------------~eI~~ai~~fk~sGKpVvA~~~~ 154 (618)
T PRK10949 96 SLFDIVNTIRQAKDDRNIT-GIVLDLKNF---AGADQPSM-----------------QYIGKALREFRDSGKPVYAVGDS 154 (618)
T ss_pred cHHHHHHHHHHHhcCCCce-EEEEEeCCC---CCccHHHH-----------------HHHHHHHHHHHHhCCeEEEEecC
Confidence 4568999999999999999 888876421 12222111 22344455556678999985444
Q ss_pred ccchHHHHHHHhcceeEEecCCceee
Q 026127 110 HAAAAGLTLALSHDYVIMRRDKGVLY 135 (243)
Q Consensus 110 ~~~G~G~~la~~~D~~ia~~~~~~f~ 135 (243)
+.-+++-||.+||-+++.+. +.++
T Consensus 155 -~~s~~YyLASaAD~I~l~P~-G~v~ 178 (618)
T PRK10949 155 -YSQGQYYLASFANKIYLSPQ-GVVD 178 (618)
T ss_pred -ccchhhhhhhhCCEEEECCC-ceEE
Confidence 45678999999999999886 4443
|
|
| >PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0016 Score=60.17 Aligned_cols=142 Identities=26% Similarity=0.318 Sum_probs=92.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCC--ChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCC
Q 026127 23 EHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGF--DLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLP 100 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~--Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (243)
.-++.....+.+..+++.+.++.-+- +.++. |.|. ++.+.. ..+..+...+.. ...+.. .
T Consensus 70 gGs~g~~~~~Ki~ra~~~A~~~~~P~-v~l~d------sgGa~~r~~eg~---------~~l~~~g~i~~~-~~~~~~-~ 131 (493)
T PF01039_consen 70 GGSVGEVHGEKIARAIELALENGLPL-VYLVD------SGGAFLRMQEGV---------ESLMGMGRIFRA-IARLSG-G 131 (493)
T ss_dssp GGTBSHHHHHHHHHHHHHHHHHTEEE-EEEEE------ESSBCGGGGGHH---------HHHHHHHHHHHH-HHHHHT-T
T ss_pred cCCCCcccceeeehHHHHHHHcCCCc-EEecc------ccccccccchhh---------hhhhhhHHHHHH-HHHHhc-C
Confidence 46899999999999999999876653 44443 3344 333322 222233333333 444555 9
Q ss_pred CcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHH---
Q 026127 101 MPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEE--- 177 (243)
Q Consensus 101 kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~e--- 177 (243)
.|+|+++.|+|.|+|..++..||++|+.++.+.+ +++-|. ..+ ..+|+.++.++
T Consensus 132 iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i-------~l~GP~--------------vv~--~~~Ge~~~~~~lgG 188 (493)
T PF01039_consen 132 IPQISVVTGPCTGGGAYLAALSDFVIMVKGTARI-------FLAGPR--------------VVE--SATGEEVDSEELGG 188 (493)
T ss_dssp S-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEE-------ESSTHH--------------HHH--HHHSSCTSHHHHHB
T ss_pred CCeEEEEccccccchhhcccccCccccCccceEE-------Eecccc--------------ccc--cccCccccchhhhh
Confidence 9999999999999999999999999999874443 342222 111 22467777654
Q ss_pred ----HHHcCcchhccCCHhHHHHHHHHHHHHH
Q 026127 178 ----ALRMGLVEAAYDSEEQVAEASMRLAKQL 205 (243)
Q Consensus 178 ----A~~~Glv~~v~~~~~~l~~~a~~~a~~l 205 (243)
+...|.+|.+++++++..+.++++..-+
T Consensus 189 ~~~h~~~sG~~d~v~~de~~a~~~ir~~ls~l 220 (493)
T PF01039_consen 189 ADVHAAKSGVVDYVVDDEEDALAQIRRLLSYL 220 (493)
T ss_dssp HHHHHHTSSSSSEEESSHHHHHHHHHHHHHTS
T ss_pred hhhhcccCCCceEEEechHHHHHHHHHhhccc
Confidence 3478999999998555555555554444
|
The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F .... |
| >COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0011 Score=53.38 Aligned_cols=96 Identities=19% Similarity=0.224 Sum_probs=62.9
Q ss_pred HHHHHHhcCCCcEEEEEccccchHHHHHHHhccee--EEecCCceeeccccccCcCCChhhHH--HHH------------
Q 026127 91 PVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYV--IMRRDKGVLYMSEVDIGLTLPDYFAA--LFR------------ 154 (243)
Q Consensus 91 ~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~--ia~~~~~~f~~pe~~~Gl~~p~~g~~--~l~------------ 154 (243)
.++..|...+.||...+-|.+...|..|++++|.. ++.++ +++-+.... |. +-+.... .-.
T Consensus 76 AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPn-srimIHqP~-gg-~~G~a~Di~i~A~ei~~~~~~l~~ 152 (200)
T COG0740 76 AIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPN-ARIMIHQPS-GG-AQGQASDIEIHAREILKIKERLNR 152 (200)
T ss_pred HHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCC-ceEEEecCC-cc-CccCHHHHHHHHHHHHHHHHHHHH
Confidence 36677788999999999999999999999999985 88887 666544333 32 1111111 111
Q ss_pred ---HHhCCHHHH--HHHHhcCcCCCHHHHHHcCcchhccCC
Q 026127 155 ---AKVGSATAR--RDVLLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 155 ---~~~g~~~~a--~~l~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
+.-| .... .+..-...-++|+||+++||||+|...
T Consensus 153 i~a~~TG-q~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~ 192 (200)
T COG0740 153 IYAEHTG-QTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIES 192 (200)
T ss_pred HHHHHcC-CCHHHHHHhhcccccCCHHHHHHcCCcceeccc
Confidence 1111 1111 111222233899999999999999986
|
|
| >PRK12552 ATP-dependent Clp protease-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0013 Score=54.11 Aligned_cols=147 Identities=12% Similarity=0.121 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCC-eEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPG-SALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~-~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
.+.++.+.+...+-.++.+...+ .-+.|-+.|+...+|-=+... .....++..|...+-||.
T Consensus 49 ~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v-----------------~~glaIyD~m~~ik~~V~ 111 (222)
T PRK12552 49 VGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFE-----------------TEAFAICDTMRYIKPPVH 111 (222)
T ss_pred hhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCcccccccccc-----------------ccHHHHHHHHHhcCCCeE
Confidence 44458888888777776533211 146666666655555211111 112346677777888999
Q ss_pred EEEccccchHHHHHHHhcce--eEEecCCceeeccccccCcC--CChhhH--HH-----------HHHHhCC-HHHHHHH
Q 026127 105 AAVNGHAAAAGLTLALSHDY--VIMRRDKGVLYMSEVDIGLT--LPDYFA--AL-----------FRAKVGS-ATARRDV 166 (243)
Q Consensus 105 aav~G~~~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~--~p~~g~--~~-----------l~~~~g~-~~~a~~l 166 (243)
..+-|.|.+.+..|++++|- |++.++ +++-+.....|.. ..+.-. .. +.++-|. ...-.++
T Consensus 112 Tv~~G~AaS~AslIl~aG~kg~R~alpn-s~iMIHqP~~~~~G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d 190 (222)
T PRK12552 112 TICIGQAMGTAAMILSAGTKGQRASLPH-ATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKD 190 (222)
T ss_pred EEEEeehhhHHHHHHhCCCCCceecCCC-cEEEeccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999995 889888 7776655443331 111100 00 1111120 1111222
Q ss_pred HhcCcCCCHHHHHHcCcchhccCC
Q 026127 167 LLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 167 ~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
+-...-++|+||+++||||+|+.+
T Consensus 191 ~~rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 191 TDRMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred hcCCCcCCHHHHHHcCCCcEEecc
Confidence 222334999999999999999965
|
|
| >TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0024 Score=59.15 Aligned_cols=144 Identities=15% Similarity=0.222 Sum_probs=88.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026127 23 EHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMP 102 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 102 (243)
.-+++....+.+..+++.+.++.-+- +.++.+.|...--|.+. ...+.+.+.... ...-..|
T Consensus 95 gGS~g~~~~~K~~r~~e~A~~~~lPl-V~l~dSgGarm~eg~~~---------------l~~~~~~~~~~~--~~s~~iP 156 (512)
T TIGR01117 95 GGSLGEMHAAKIVKIMDLAMKMGAPV-VGLNDSGGARIQEAVDA---------------LKGYGDIFYRNT--IASGVVP 156 (512)
T ss_pred ccCCCHHHHHHHHHHHHHHHHcCCCE-EEEecCCCCCccccchh---------------hhhHHHHHHHHH--HHcCCCc
Confidence 46889999999999999998876653 44444433211112110 011122222221 1234589
Q ss_pred EEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHH----
Q 026127 103 TVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEA---- 178 (243)
Q Consensus 103 ~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA---- 178 (243)
.|+++.|+|.||+......||++|+.++.+++. +.-|.. +.. .+|+.+++++.
T Consensus 157 ~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~-------~aGP~v----v~~------------~~Ge~v~~e~lGGa~ 213 (512)
T TIGR01117 157 QISAIMGPCAGGAVYSPALTDFIYMVDNTSQMF-------ITGPQV----IKT------------VTGEEVTAEQLGGAM 213 (512)
T ss_pred EEEEEecCCCcHHHHHHHhcCceEEeccceEEE-------ecChHH----HHh------------hcCcccchhhcchHH
Confidence 999999999999988888999999998744333 312221 111 13444444433
Q ss_pred -H--HcCcchhccCCHhHHHHHHHHHHHHHhc
Q 026127 179 -L--RMGLVEAAYDSEEQVAEASMRLAKQLAG 207 (243)
Q Consensus 179 -~--~~Glv~~v~~~~~~l~~~a~~~a~~l~~ 207 (243)
. .-|.+|.+++++++..+.++++..-+-.
T Consensus 214 ~h~~~sGv~d~~~~de~ea~~~~r~~ls~lp~ 245 (512)
T TIGR01117 214 AHNSVSGVAHFIAEDDDDCIMLIRRLLSFLPS 245 (512)
T ss_pred HhccccceeEEecCChHHHHHHHHHHHHhCCc
Confidence 3 5899999999877777777777665543
|
This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. |
| >PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0036 Score=58.56 Aligned_cols=147 Identities=16% Similarity=0.180 Sum_probs=88.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCC
Q 026127 22 DEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPM 101 (243)
Q Consensus 22 ~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 101 (243)
..-+++....+.+.++++.+.+..-+ +|.+...|+.+-.+ ..+.+. ....+.+.+. ....+.....
T Consensus 141 ~GGs~g~~~~~Ki~r~~elA~~~~lP--lV~l~DSgGarl~~-q~e~~~----------~~~~~g~if~-~~~~ls~~~V 206 (569)
T PLN02820 141 KGGTYYPITVKKHLRAQEIAAQCRLP--CIYLVDSGGANLPR-QAEVFP----------DRDHFGRIFY-NQARMSSAGI 206 (569)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHcCCC--EEEEEeCCCcCCcc-cccccc----------hHhHHHHHHH-HHHHHhCCCC
Confidence 35689999999999999999877655 44444333333221 111110 0011111122 2233556779
Q ss_pred cEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHH---
Q 026127 102 PTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEA--- 178 (243)
Q Consensus 102 p~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA--- 178 (243)
|.|+++-|+|.|||......||++|++++.+.+. +.-|. ..+ ..+|+.+++++.
T Consensus 207 P~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~-------~aGP~--------------vV~--~~~Ge~v~~eeLGGa 263 (569)
T PLN02820 207 PQIALVLGSCTAGGAYVPAMADESVIVKGNGTIF-------LAGPP--------------LVK--AATGEEVSAEDLGGA 263 (569)
T ss_pred CEEEEEeCCCChHHHHHHHhCCceEEecCCcEEE-------ecCHH--------------HHH--hhcCcccCHHHhCCH
Confidence 9999999999999999999999999998754333 32222 111 123444554443
Q ss_pred --H--HcCcchhccCCHhHHHHHHHHHHHHH
Q 026127 179 --L--RMGLVEAAYDSEEQVAEASMRLAKQL 205 (243)
Q Consensus 179 --~--~~Glv~~v~~~~~~l~~~a~~~a~~l 205 (243)
. ..|.+|-+++++.+..+.++++..-+
T Consensus 264 ~~h~~~sGv~d~~~~de~~a~~~~R~lls~L 294 (569)
T PLN02820 264 DVHCKVSGVSDHFAQDELHALAIGRNIVKNL 294 (569)
T ss_pred HHhcccccccccccCchHHHHHHHHHHHHhc
Confidence 2 47999999988545555555554444
|
|
| >COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0029 Score=53.43 Aligned_cols=94 Identities=18% Similarity=0.308 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHH
Q 026127 86 VESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165 (243)
Q Consensus 86 ~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~ 165 (243)
.+.+.+-+..+..+++|+||.|=|---+||..-...+|.+++-++ ++++. + .|.+.++.|=+= ..++.+
T Consensus 174 ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~-s~ySV------i-sPEG~AsILWkD---~~ka~e 242 (317)
T COG0825 174 SEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLEN-STYSV------I-SPEGCASILWKD---ASKAKE 242 (317)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHh-ceeee------c-ChhhhhhhhhcC---hhhhHH
Confidence 455667778889999999999999987777766677899999998 77873 2 466655543221 233333
Q ss_pred HHhcCcCCCHHHHHHcCcchhccCCH
Q 026127 166 VLLRAKKIKGEEALRMGLVEAAYDSE 191 (243)
Q Consensus 166 l~l~g~~~~a~eA~~~Glv~~v~~~~ 191 (243)
. .....++|.+.+++|+||.|++.+
T Consensus 243 A-Ae~mkita~dLk~lgiID~II~Ep 267 (317)
T COG0825 243 A-AEAMKITAHDLKELGIIDGIIPEP 267 (317)
T ss_pred H-HHHcCCCHHHHHhCCCcceeccCC
Confidence 3 356789999999999999999863
|
|
| >COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.031 Score=46.91 Aligned_cols=161 Identities=13% Similarity=0.165 Sum_probs=106.2
Q ss_pred EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHH
Q 026127 10 VFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESF 89 (243)
Q Consensus 10 v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (243)
++...++..- -.-++....=+.|..+++++-++.- - +|+++.+|++=-.-.-++- -+ ....
T Consensus 124 vv~av~df~F--mgGSmGsVvGeki~ra~E~A~e~k~-P-~v~f~aSGGARMQEg~lSL--------------MQ-Makt 184 (294)
T COG0777 124 VVLAVMDFAF--MGGSMGSVVGEKITRAIERAIEDKL-P-LVLFSASGGARMQEGILSL--------------MQ-MAKT 184 (294)
T ss_pred EEEEEEeccc--cccchhHHHHHHHHHHHHHHHHhCC-C-EEEEecCcchhHhHHHHHH--------------HH-HHHH
Confidence 4444444332 3457788888899999999887754 4 7888776543222111111 11 1234
Q ss_pred HHHHHHHhcCCCcEEEEEccccchHH-HHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHh
Q 026127 90 RPVVAAMMDLPMPTVAAVNGHAAAAG-LTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLL 168 (243)
Q Consensus 90 ~~~~~~l~~~~kp~Iaav~G~~~G~G-~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l 168 (243)
...+.++.+...|.|+.+..+..||= ..+++..|+.||-+. +.+ |+.-|-..-+++.+.++ ..
T Consensus 185 saAl~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~-AlI-------GFAGpRVIEQTire~LP-eg------- 248 (294)
T COG0777 185 SAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPG-ALI-------GFAGPRVIEQTIREKLP-EG------- 248 (294)
T ss_pred HHHHHHHHhcCCceEEEecCCCccchhHhHHhccCeeecCcc-ccc-------ccCcchhhhhhhcccCC-cc-------
Confidence 55677788899999999999998775 589999999999766 554 44334333333333343 11
Q ss_pred cCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCC
Q 026127 169 RAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRK 209 (243)
Q Consensus 169 ~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~ 209 (243)
-=+++-.++.|+||.||+. .++......+...+...+
T Consensus 249 ---fQ~aEfLlehG~iD~iv~R-~elr~tla~ll~~~~~~~ 285 (294)
T COG0777 249 ---FQTAEFLLEHGMIDMIVHR-DELRTTLASLLAKLTPQP 285 (294)
T ss_pred ---hhhHHHHHHcCCceeeecH-HHHHHHHHHHHHHhCCCC
Confidence 1246677899999999998 788888888877776654
|
|
| >PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.028 Score=52.05 Aligned_cols=173 Identities=12% Similarity=0.136 Sum_probs=101.7
Q ss_pred eCcEEEEEEcCCCCCCCC--CCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHH
Q 026127 7 HGDVFVLTLTGSSDVDEH--RFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHY 84 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N--~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 84 (243)
+|.-.-|.=|+| +.+ .++.+-.+...+.++.+++..-+ +|.+... ..|..|.. .+...
T Consensus 292 ~G~pVGiian~~---~~~~G~~~~~~a~K~arfi~lcd~~~iP--lv~l~dt-pGf~~g~~--------------~E~~g 351 (493)
T PF01039_consen 292 GGRPVGIIANNP---RQRAGALDPDGARKAARFIRLCDAFNIP--LVTLVDT-PGFMPGPE--------------AERAG 351 (493)
T ss_dssp TTEEEEEEEE-T---TCGGGEB-HHHHHHHHHHHHHHHHTT----EEEEEEE-CEB--SHH--------------HHHTT
T ss_pred CCcceEEEEecc---ccccccCChHHHHHHHHHHHHHHhhCCc--eEEEeec-ccccccch--------------hhhcc
Confidence 333334555666 333 69999999999999999875333 4544433 45555542 22334
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhc----ceeEEecCCceeeccccccCcCCChhhHHHHHHH-hC-
Q 026127 85 MVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSH----DYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAK-VG- 158 (243)
Q Consensus 85 ~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~----D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~-~g- 158 (243)
......+++.++.++++|+|..|-|.+.|+|...+... |+++|.++ ++++ ...|...+..+.+. .-
T Consensus 352 ~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~-a~~~-------vm~~e~a~~i~~~~~~~~ 423 (493)
T PF01039_consen 352 IIRAGARLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPT-AEIG-------VMGPEGAASILYRDELEA 423 (493)
T ss_dssp HHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT--EEE-------SS-HHHHHHHHTHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhc-ceee-------ecChhhhheeeehhhhhh
Confidence 56677889999999999999999999999888555555 77777776 5554 42344433322211 10
Q ss_pred ------CHHH-HHHHH--hcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcC
Q 026127 159 ------SATA-RRDVL--LRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208 (243)
Q Consensus 159 ------~~~~-a~~l~--l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~ 208 (243)
.... ..+.+ ..-+.-++..+...|++|.|+++ .+.............++
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii~p-~~tR~~l~~~l~~~~~~ 481 (493)
T PF01039_consen 424 AEAEGADPEAQRAEKIAEYEDELSSPYRAASRGYVDDIIDP-AETRKVLIAALEMLWQK 481 (493)
T ss_dssp SCHCCHSHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEESSG-GGHHHHHHHHHHHHTTS
T ss_pred hhcccchhHHHHHHHHHHHHHhcCCHHHHHhcCCCCCccCH-HHHHHHHHHHHHHHHhC
Confidence 0000 11111 11223688999999999999988 56666655555554444
|
The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F .... |
| >PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.11 Score=48.74 Aligned_cols=158 Identities=11% Similarity=0.010 Sum_probs=96.0
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 25 RFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 25 ~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
+++.+..+...+.++.+++-.-+ +|.+.-. ..|..|.+-+. ....+...+++.++....+|.|
T Consensus 381 ~l~~~~a~Kaarfi~lc~~~~iP--lv~l~D~-pGf~~G~~~E~--------------~G~~~~~a~l~~A~a~~~VP~i 443 (569)
T PLN02820 381 ILFTESALKGAHFIELCAQRGIP--LLFLQNI-TGFMVGSRSEA--------------SGIAKAGAKMVMAVACAKVPKI 443 (569)
T ss_pred ccCHHHHHHHHHHHHHHHhcCCC--EEEEEEC-CCCCCCHHHHH--------------hhHHHHHHHHHHHHHhCCCCEE
Confidence 57788888888888888864333 3444332 33666653332 3356678889999999999999
Q ss_pred EEEccccchHHHHHHH----hcceeEEecCCceeeccccccCcCCChhhHHHHHH-Hh-----------CCHHHH-HHH-
Q 026127 105 AAVNGHAAAAGLTLAL----SHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRA-KV-----------GSATAR-RDV- 166 (243)
Q Consensus 105 aav~G~~~G~G~~la~----~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~-~~-----------g~~~~a-~~l- 166 (243)
+.|-|.+.|+|..-+. ..|++++.++ + .+|...|......+.+ .+ .....+ ++.
T Consensus 444 svi~g~a~G~g~~aM~g~~~~~d~~~awp~-A-------~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~ 515 (569)
T PLN02820 444 TIIVGGSFGAGNYGMCGRAYSPNFLFMWPN-A-------RIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKT 515 (569)
T ss_pred EEEECCcchHHHHHhcCcCCCCCEEEECCC-C-------eEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHH
Confidence 9999999998875554 4566666655 4 4455234443333332 11 101111 111
Q ss_pred -HhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcC
Q 026127 167 -LLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208 (243)
Q Consensus 167 -~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~ 208 (243)
-..-+..++-.|-+.|+||.|+++ .+.........+.....
T Consensus 516 ~~~~~~~~~p~~aa~~~~vD~VIdP-~dTR~~l~~~l~~~~~~ 557 (569)
T PLN02820 516 VEAYEREANPYYSTARLWDDGVIDP-ADTRRVLGLCLSAALNR 557 (569)
T ss_pred HHHHHHhCCHHHHHHcCCcCcccCH-HHHHHHHHHHHHHhhcC
Confidence 111234577788899999999987 54544444444444333
|
|
| >COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.032 Score=51.33 Aligned_cols=143 Identities=24% Similarity=0.280 Sum_probs=87.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCC
Q 026127 22 DEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPM 101 (243)
Q Consensus 22 ~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 101 (243)
+.-++.....+.+..+.+.+.++..+. +.+..+.|..---| +..+ ..+...|. -...++.. +
T Consensus 103 ~gGt~~~~~~~Ki~r~~~~A~~~g~P~-i~l~dsgGari~~~--v~~l-------------~g~g~iF~-~~a~~Sg~-I 164 (526)
T COG4799 103 KGGTLGEMTAKKILRAQELAIENGLPV-IGLNDSGGARIQEG--VPSL-------------AGYGRIFY-RNARASGV-I 164 (526)
T ss_pred ecccccccccchHHHHHHHHHHcCCCE-EEEEcccccccccC--cccc-------------ccchHHHH-HHHHhccC-C
Confidence 467888888888888888888877775 66665544333333 1111 11111222 22334445 9
Q ss_pred cEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHH----
Q 026127 102 PTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEE---- 177 (243)
Q Consensus 102 p~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~e---- 177 (243)
|.|++|-|+|.|||.-+-..||++|+.++.++ +.++-|+.- - ..||+.++++|
T Consensus 165 PqIsvv~G~c~gGgaY~pal~D~~imv~~~~~-------mfltGP~~i----k------------~vtGe~V~~e~LGGa 221 (526)
T COG4799 165 PQISVVMGPCAGGGAYSPALTDFVIMVRDQSY-------MFLTGPPVI----K------------AVTGEEVSAEELGGA 221 (526)
T ss_pred CEEEEEEecCcccccccccccceEEEEcCCcc-------EEeeCHHHH----H------------hhcCcEeehhhccch
Confidence 99999999999999999999999999998432 233223321 1 12344444433
Q ss_pred ---HHHcCcchhccCCHhHHHHHHHHHHHHH
Q 026127 178 ---ALRMGLVEAAYDSEEQVAEASMRLAKQL 205 (243)
Q Consensus 178 ---A~~~Glv~~v~~~~~~l~~~a~~~a~~l 205 (243)
+...|.+|.+.++.++..+.++++..-+
T Consensus 222 ~vh~~~sGva~~~a~dd~~Ai~~vr~~lsyl 252 (526)
T COG4799 222 QVHARKSGVADLLAEDDEDAIELVRRLLSYL 252 (526)
T ss_pred hhhcccccceeeeecCHHHHHHHHHHHHHhc
Confidence 2345999999988544444444444443
|
|
| >KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.21 Score=41.67 Aligned_cols=134 Identities=13% Similarity=0.095 Sum_probs=74.0
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVA 105 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 105 (243)
++.++.+.+...+-.++.++.-| -|.+- .-|.|+.+.. ...++..+..+.-||-.
T Consensus 101 Idd~va~~viaqlL~Ld~ed~~K-~I~ly----INSPGG~vta--------------------glAIYDtMq~ik~~V~T 155 (275)
T KOG0840|consen 101 IDDDVANLVIAQLLYLDSEDPKK-PIYLY----INSPGGSVTA--------------------GLAIYDTMQYIKPDVST 155 (275)
T ss_pred CcHHHHHHHHHHHHHhhccCCCC-CeEEE----EeCCCCccch--------------------hhhHHHHHHhhCCCcee
Confidence 77888888888777777554434 33331 1244444421 12345556666666666
Q ss_pred EEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhH--H---HH---HHHhCCHHHHHHH--HhcC-----
Q 026127 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFA--A---LF---RAKVGSATARRDV--LLRA----- 170 (243)
Q Consensus 106 av~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~--~---~l---~~~~g~~~~a~~l--~l~g----- 170 (243)
.+-|.|.+-|..|..+ .+.. .++.+|..++=+.-|.+|. + .. -+.+-......++ --||
T Consensus 156 ic~G~Aas~aalLLaa-----G~KG-~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~ 229 (275)
T KOG0840|consen 156 ICVGLAASMAALLLAA-----GAKG-KRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEV 229 (275)
T ss_pred eehhhHHhHHHHHHhc-----CCCc-ceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 6667777766555433 1222 5677777776665555441 1 11 1111101111111 1344
Q ss_pred --------cCCCHHHHHHcCcchhccCC
Q 026127 171 --------KKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 171 --------~~~~a~eA~~~Glv~~v~~~ 190 (243)
+-++|+||+++||||+|.++
T Consensus 230 i~~d~dRd~fmsa~EA~eyGliD~v~~~ 257 (275)
T KOG0840|consen 230 IEKDMDRDRFMSAEEAKEYGLIDKVIDH 257 (275)
T ss_pred HHhhhcccccCCHHHHHHhcchhhhhcC
Confidence 34899999999999999974
|
|
| >COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=92.82 E-value=3.2 Score=38.56 Aligned_cols=168 Identities=12% Similarity=0.113 Sum_probs=99.7
Q ss_pred EEEcCCCCCCCC-CCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHH
Q 026127 13 LTLTGSSDVDEH-RFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRP 91 (243)
Q Consensus 13 i~ln~p~~~~~N-~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (243)
|.=|.|. ..| .++.+....-.+.++-.+.. .+= .|.+. .-+.|..|-+-+. ....+...+
T Consensus 328 iIANqp~--~~~G~l~~~sa~KaArFI~~cd~~-~iP-lv~L~-d~pGFm~G~~~E~--------------~giik~Gak 388 (526)
T COG4799 328 IIANQPR--HLGGVLDIDSADKAARFIRLCDAF-NIP-LVFLV-DTPGFMPGTDQEY--------------GGIIKHGAK 388 (526)
T ss_pred EEecCcc--ccccccchHHHHHHHHHHHhhhcc-CCC-eEEEe-CCCCCCCChhHHh--------------ChHHHhhhH
Confidence 4556674 444 89999999999999655554 433 44443 3477999885543 334666788
Q ss_pred HHHHHhcCCCcEEEEEccccchHHHHHHH----hcceeEEecCCceeeccccccCcCCChhhHHHHH-HHhC---CHHHH
Q 026127 92 VVAAMMDLPMPTVAAVNGHAAAAGLTLAL----SHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFR-AKVG---SATAR 163 (243)
Q Consensus 92 ~~~~l~~~~kp~Iaav~G~~~G~G~~la~----~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~-~~~g---~~~~a 163 (243)
++.++.+..+|.|..|-|-+.|+|...+. ..|+.+|. |..++|..-|.+....+. +++. .+...
T Consensus 389 l~~A~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~~Aw--------P~a~iaVMG~egAv~i~~~k~l~~~~~~~~~ 460 (526)
T COG4799 389 LLYAVAEATVPKITVITRKAYGGAYYVMGGKALGPDFNYAW--------PTAEIAVMGPEGAVSILYRKELAAAERPEER 460 (526)
T ss_pred HHhhHhhccCCeEEEEecccccceeeeecCccCCCceeEec--------CcceeeecCHHHHHHHHHHHHhhcccCchhH
Confidence 99999999999999999999999975443 34454444 445555523433333333 2221 00000
Q ss_pred H----H-H--HhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcC
Q 026127 164 R----D-V--LLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208 (243)
Q Consensus 164 ~----~-l--~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~ 208 (243)
+ + + -+.-+-..+--|.+.|++|.|+++. +...........+..+
T Consensus 461 ~~~~~~~~~~eY~~~~~~p~~aa~r~~iD~vI~p~-~tR~~L~~~l~~~~~k 511 (526)
T COG4799 461 EALLRKQLIAEYEEQFSNPYYAAERGYIDAVIDPA-DTRAVLGRALSALANK 511 (526)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHhCCCCcccCHH-HHHHHHHHHHHHHhcC
Confidence 0 0 0 1111224566677899999999873 3433333333333333
|
|
| >KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.93 E-value=3.8 Score=37.16 Aligned_cols=168 Identities=8% Similarity=-0.010 Sum_probs=99.7
Q ss_pred EEEcCCCCCC-CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHH
Q 026127 13 LTLTGSSDVD-EHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRP 91 (243)
Q Consensus 13 i~ln~p~~~~-~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (243)
|.-|+|+ - .-.|..+....-.+.++-..+.. +- .|.+...++ |-.|.+.+... ..+....
T Consensus 353 Ivgnn~k--f~~G~L~s~sa~KgarfIe~c~q~~-IP-Li~l~ni~G-fm~g~~~e~~g--------------IaK~gAk 413 (536)
T KOG0540|consen 353 IVGNNPK--FAGGVLFSESAVKGARFIELCDQRN-IP-LIFLQNITG-FMVGRAAEAGG--------------IAKHGAK 413 (536)
T ss_pred EeccCch--hcccccchhhhhhhHHHHHHHHhcC-Cc-EEEEEccCC-ccccchhhhhc--------------hhhhhhh
Confidence 4556662 1 24777788888888877777654 33 555555544 99998776432 3444567
Q ss_pred HHHHHhcCCCcEEEEEccccchHHHH---HHHhcceeEEecCCceeeccccccCcCCChhhHHH-HHHHhCCHHHHHHHH
Q 026127 92 VVAAMMDLPMPTVAAVNGHAAAAGLT---LALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAAL-FRAKVGSATARRDVL 167 (243)
Q Consensus 92 ~~~~l~~~~kp~Iaav~G~~~G~G~~---la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~-l~~~~g~~~~a~~l~ 167 (243)
++.+.....+|-|..+-|.+.||-.. -+++-|+.|+.++ +++++-..+-. ...-.+. +.+.....+...+.+
T Consensus 414 lv~a~a~akvpkITiit~~syGG~y~m~sr~~~gd~~yawP~-A~IavmG~~~a---~~Vi~q~~~e~a~~~~~~~~E~f 489 (536)
T KOG0540|consen 414 LVYAVACAKVPKITIITGGSYGGNYAMCSRGYSGDINYAWPN-ARIAVMGGKQA---ANVIFQITLEKAVALKAPYIEKF 489 (536)
T ss_pred hhhhhhhccCceEEEEecCccCCcccccccccCCceeEEccc-ceeeeccccch---hhhhhhhhhhhhhhhcchHHHHh
Confidence 88889999999999999999997655 4466788888877 66653211100 0000111 222222122233333
Q ss_pred hcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCC
Q 026127 168 LRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRK 209 (243)
Q Consensus 168 l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~ 209 (243)
|.++.+. ..||+|.|+++ .+.....-...+..+.+|
T Consensus 490 --~npy~a~---~Rg~~D~II~p-~~tR~vl~~~l~~~~~~p 525 (536)
T KOG0540|consen 490 --GNPYYAA---ARGWDDGIIDP-SDTRKVLGLDLQAAANKP 525 (536)
T ss_pred --cCccHHH---HhhccccccCh-hHhhHHHHHHHHHHhcCC
Confidence 7776654 78999999987 334333333333334443
|
|
| >PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3 | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.65 Score=40.38 Aligned_cols=80 Identities=24% Similarity=0.271 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHHHHhcC---CCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026127 27 GPPAIDSILSAIAKAKAEA---TPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPT 103 (243)
Q Consensus 27 ~~~~~~~l~~~l~~~~~d~---~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ 103 (243)
......++.++++.+.... .+-++||.+|+| ..+.+....+ ..+.++|+.+|.||
T Consensus 53 G~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGG-------s~eDL~~FN~---------------e~varai~~~~~Pv 110 (319)
T PF02601_consen 53 GEGAAASIVSALRKANEMGQADDFDVIIIIRGGG-------SIEDLWAFND---------------EEVARAIAASPIPV 110 (319)
T ss_pred ccchHHHHHHHHHHHHhccccccccEEEEecCCC-------ChHHhcccCh---------------HHHHHHHHhCCCCE
Confidence 3456788999999998654 455466666643 3333332111 45888999999999
Q ss_pred EEEEccccchHHHHHHHhcceeEEecC
Q 026127 104 VAAVNGHAAAAGLTLALSHDYVIMRRD 130 (243)
Q Consensus 104 Iaav~G~~~G~G~~la~~~D~~ia~~~ 130 (243)
|++| ||-.-- .-.=+.+|.|..++.
T Consensus 111 isaI-GHe~D~-ti~D~vAd~ra~TPt 135 (319)
T PF02601_consen 111 ISAI-GHETDF-TIADFVADLRAPTPT 135 (319)
T ss_pred EEec-CCCCCc-hHHHHHHHhhCCCHH
Confidence 9976 333222 223366788888876
|
1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity |
| >TIGR00237 xseA exodeoxyribonuclease VII, large subunit | Back alignment and domain information |
|---|
Probab=89.83 E-value=1.1 Score=40.75 Aligned_cols=81 Identities=20% Similarity=0.214 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVA 105 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 105 (243)
-..+...++..+++.++..+++-++||.+|.| -.+.+....+ ..+.++++++|.|||+
T Consensus 167 QG~~a~~~i~~al~~~~~~~~~dviii~RGGG-------s~eDL~~Fn~---------------e~~~rai~~~~~Pvis 224 (432)
T TIGR00237 167 QGEGAVQSIVESIELANTKNECDVLIVGRGGG-------SLEDLWSFND---------------EKVARAIFLSKIPIIS 224 (432)
T ss_pred cCccHHHHHHHHHHHhhcCCCCCEEEEecCCC-------CHHHhhhcCc---------------HHHHHHHHcCCCCEEE
Confidence 34566788889998888766566355555533 2333332211 4588899999999999
Q ss_pred EEccccchHHHHHHHhcceeEEecC
Q 026127 106 AVNGHAAAAGLTLALSHDYVIMRRD 130 (243)
Q Consensus 106 av~G~~~G~G~~la~~~D~~ia~~~ 130 (243)
+| ||-.-- .-.=+.+|.|..++.
T Consensus 225 ~i-GHe~D~-ti~D~vAd~ra~TPt 247 (432)
T TIGR00237 225 AV-GHETDF-TISDFVADLRAPTPS 247 (432)
T ss_pred ec-CcCCCc-cHHHHhhhccCCCcH
Confidence 76 222111 113366788888776
|
This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits. |
| >PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins | Back alignment and domain information |
|---|
Probab=89.78 E-value=10 Score=31.55 Aligned_cols=96 Identities=15% Similarity=0.171 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccccchHHH-HHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHH
Q 026127 83 HYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGL-TLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSAT 161 (243)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~-~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~ 161 (243)
+++.....+.+...+...-|||+.|-|.+++||| .-.+.+|.+||-++ +... -+++ | .+.+.+++ . ..
T Consensus 88 ~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~rl~AL~g-a~i~----vM~~--~--s~ARVTk~-~-ve 156 (234)
T PF06833_consen 88 NQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANRLIALPG-AMIH----VMGK--P--SAARVTKR-P-VE 156 (234)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcchhcCCC-Ceee----cCCh--H--HhHHHhhc-C-HH
Confidence 3444455666667778899999999999999997 67788888888775 4332 1222 2 34454433 2 34
Q ss_pred HHHHHHhcCcC--CCHHHHHHcCcchhccC
Q 026127 162 ARRDVLLRAKK--IKGEEALRMGLVEAAYD 189 (243)
Q Consensus 162 ~a~~l~l~g~~--~~a~eA~~~Glv~~v~~ 189 (243)
.-.++.-+--+ .+.+--.++|.++++.+
T Consensus 157 ~Le~la~s~PvfA~gi~ny~~lG~l~~l~~ 186 (234)
T PF06833_consen 157 ELEELAKSVPVFAPGIENYAKLGALDELWD 186 (234)
T ss_pred HHHHHhhcCCCcCCCHHHHHHhccHHHHhc
Confidence 44455544433 45677789999999998
|
Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity. |
| >COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=87.71 E-value=1.6 Score=39.47 Aligned_cols=77 Identities=26% Similarity=0.299 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEE-ecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 026127 28 PPAIDSILSAIAKAKAEATPGSALIT-TSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAA 106 (243)
Q Consensus 28 ~~~~~~l~~~l~~~~~d~~v~~~vvl-~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa 106 (243)
.....++.++++.+++..++. ++|+ .| |+-++++...++ ..+.+++++++.|+|++
T Consensus 175 ~~A~~eIv~aI~~an~~~~~D-vlIVaRG-------GGSiEDLW~FNd---------------E~vaRAi~~s~iPvISA 231 (440)
T COG1570 175 EGAAEEIVEAIERANQRGDVD-VLIVARG-------GGSIEDLWAFND---------------EIVARAIAASRIPVISA 231 (440)
T ss_pred CCcHHHHHHHHHHhhccCCCC-EEEEecC-------cchHHHHhccCh---------------HHHHHHHHhCCCCeEee
Confidence 455788999999999888887 4444 34 344555544322 35889999999999998
Q ss_pred EccccchHHHHHH-HhcceeEEecC
Q 026127 107 VNGHAAAAGLTLA-LSHDYVIMRRD 130 (243)
Q Consensus 107 v~G~~~G~G~~la-~~~D~~ia~~~ 130 (243)
| ||-.- +.|+ ..+|+|-.++.
T Consensus 232 V-GHEtD--~tL~DfVAD~RApTPT 253 (440)
T COG1570 232 V-GHETD--FTLADFVADLRAPTPT 253 (440)
T ss_pred c-ccCCC--ccHHHhhhhccCCCch
Confidence 7 23211 2222 45677777776
|
|
| >PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=86.42 E-value=2.2 Score=38.90 Aligned_cols=79 Identities=24% Similarity=0.283 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 026127 27 GPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAA 106 (243)
Q Consensus 27 ~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaa 106 (243)
......++.++++.++... +-++||.+|.| -.+.+....+ ..+.++++++|.|||++
T Consensus 174 G~~A~~~i~~al~~~~~~~-~Dviii~RGGG-------S~eDL~~Fn~---------------e~v~~ai~~~~~Pvis~ 230 (438)
T PRK00286 174 GEGAAASIVAAIERANARG-EDVLIVARGGG-------SLEDLWAFND---------------EAVARAIAASRIPVISA 230 (438)
T ss_pred CccHHHHHHHHHHHhcCCC-CCEEEEecCCC-------CHHHhhccCc---------------HHHHHHHHcCCCCEEEe
Confidence 3456788888888887643 44366666643 2333332211 45888999999999997
Q ss_pred EccccchHHHHHHHhcceeEEecC
Q 026127 107 VNGHAAAAGLTLALSHDYVIMRRD 130 (243)
Q Consensus 107 v~G~~~G~G~~la~~~D~~ia~~~ 130 (243)
| ||-.-- .-.=+.+|.|..++.
T Consensus 231 I-GHE~D~-tl~D~vAd~ra~TPt 252 (438)
T PRK00286 231 V-GHETDF-TIADFVADLRAPTPT 252 (438)
T ss_pred c-cCCCCc-cHHHHhhhccCCChH
Confidence 6 222111 123366788888776
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 2e-25
Identities = 51/211 (24%), Positives = 82/211 (38%), Gaps = 24/211 (11%)
Query: 3 TLEKHGDVFVLTLTGSSDVDEHR-----FGPPAIDSILSAIAKAKAEATPGSALITTSHG 57
+ V LTL + P I + +A+ +A+ + + +I T
Sbjct: 9 SYHLDDGVATLTL--------NNGKVNAISPDVIIAFNAALDQAEKDR---AIVIVTGQP 57
Query: 58 KFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLT 117
S G+DL T + E +V + M+ P P + A GHA A G
Sbjct: 58 GILSGGYDLK------VMTSSAEAAINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAF 111
Query: 118 LALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEE 177
L LS DY I + ++EV IG+T+ L R ++ + R V+ A+ E
Sbjct: 112 LLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRSVIN-AEMFDPEG 170
Query: 178 ALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
A+ G ++ EE A + +A QL
Sbjct: 171 AMAAGFLDKVVSVEELQGAA-LAVAAQLKKI 200
|
| >3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263 | Back alignment and structure |
|---|
Score = 99.5 bits (249), Expect = 2e-25
Identities = 50/216 (23%), Positives = 85/216 (39%), Gaps = 25/216 (11%)
Query: 3 TLEKHGDVFVLTLTGSSDVDEHR------FGPPAIDSILSAIAKAKAEATPGSALITTSH 56
E D +TL S+L AI E + S ++ + H
Sbjct: 7 HTEIQNDALYITL--------DYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKH 58
Query: 57 GKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGL 116
+FS+G L S + RL ++ V + P TVA +NG+A G
Sbjct: 59 RAYFSSGPRLEDLLICAS-DQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGF 117
Query: 117 TLALSHDYVIMRRDKGVLYMSEVDIGLTLPD----YFAALFRAKVGSATARRDVLLRAKK 172
+ L+ D I + + +G++ PD YF L R +G ++LL K
Sbjct: 118 NMMLACDRRIA-LRRAKFLENFHKMGIS-PDLGASYF--LPRI-IGYEQT-MNLLLEGKL 171
Query: 173 IKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
EEALR+GL++ ++++++ E K ++
Sbjct: 172 FTSEEALRLGLIQEICENKQELQERVKNYLKAVSEG 207
|
| >3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 3e-25
Identities = 49/211 (23%), Positives = 83/211 (39%), Gaps = 23/211 (10%)
Query: 3 TLEKHGDVFVLTLTGSSDVDEHR-----FGPPAIDSILSAIAKAKAEATPGSALITTSHG 57
T + V+ + GP ++ AI A + AL+ +
Sbjct: 8 TYTHDDAIGVIRM--------DDGKVNVLGPTMQQALNEAIDAADRDNV--GALVIAGNH 57
Query: 58 KFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLT 117
+ FS GFDL +G A + M+ + ++ P P V A GHA A G
Sbjct: 58 RVFSGGFDLKVL-TSGEAKPAID----MLRGGFELSYRLLSYPKPVVIACTGHAIAMGAF 112
Query: 118 LALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEE 177
L S D+ + + +EV IG+T+P + + ++ + ++ L AK GE
Sbjct: 113 LLCSGDHRVA-AHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGL-AKTFFGET 170
Query: 178 ALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
AL G ++ E ++ A A++ AG
Sbjct: 171 ALAAGFIDEISLPEVVLSRA-EEAAREFAGL 200
|
| >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 8e-25
Identities = 42/177 (23%), Positives = 65/177 (36%), Gaps = 8/177 (4%)
Query: 35 LSAIAKA--KAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV 92
I +A A + T +G ++S+G DL G E+ R
Sbjct: 55 YHEIMRALKAASKDDSIITVLTGNGDYYSSGNDLT-NFTDIPPGGVEEKAKNNAVLLREF 113
Query: 93 VAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAAL 152
V +D P P +A VNG A +TL D V D+ + +G + P+ ++
Sbjct: 114 VGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYA-SDRATFHTPFSHLGQS-PEGCSSY 171
Query: 153 FRAK-VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
K + A A ++L+ KK+ EA GLV + E K A
Sbjct: 172 TFPKIMSPAKA-TEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEV-WTRLKAFAKL 226
|
| >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 4e-24
Identities = 49/215 (22%), Positives = 85/215 (39%), Gaps = 26/215 (12%)
Query: 3 TLEKHGDVFVLTLTGSSDVDEHR------FGPPAIDSILSAIAKAKAEATPGSALITTSH 56
V +T+ A+ + A+ +A+ + + G+ +IT +
Sbjct: 6 GHRVEDGVAEITI--------KLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGA- 56
Query: 57 GKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGL 116
F GF L G R+ + ++ ++ + P +AA+NG AA GL
Sbjct: 57 EDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGL 116
Query: 117 TLALSHDYVIMRRDKGVLYMSEVDIGLTLPD----YFAALFRAKVGSATARRDVLLRAKK 172
++L+ D I D + IG+ D Y L R VG A +++L +
Sbjct: 117 GISLASDMAIC-ADSAKFVCAWHTIGIG-NDTATSYS--LARI-VGMRRA-MELMLTNRT 170
Query: 173 IKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAG 207
+ EEA GLV Y +E A ++A++LA
Sbjct: 171 LYPEEAKDWGLVSRVYPKDEFREVA-WKVARELAA 204
|
| >1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 3e-23
Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 11/185 (5%)
Query: 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYM 85
P + +A + L+ G FS G + + A R+
Sbjct: 34 MPPALHRGLARVWRDLEAVEGVRAVLLRGE-GGVFSAGGSFGLIEEMRASHEALLRV--- 89
Query: 86 VESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTL 145
R +V ++ P P VAAV A AGL LAL+ D ++ L + +G+
Sbjct: 90 FWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVV-GKGTRLLDGHLRLGVA- 147
Query: 146 PDYFAALF--RAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAK 203
A L VG A A + LL + + GEEA R+GLV A + E+ +A + +A+
Sbjct: 148 AGDHAVLLWPLL-VGMAKA-KYHLLLNEPLTGEEAERLGLVALAVEDEKVYEKA-LEVAE 204
Query: 204 QLAGR 208
+LA
Sbjct: 205 RLAQG 209
|
| >3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 8e-23
Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 11/185 (5%)
Query: 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYM 85
GP + + L+ GK FS+G G E +
Sbjct: 37 VGPQMHRDLADVWPVIDRDPDVRVVLVRGE-GKAFSSGGSFELIDE---TIGDYEGRIRI 92
Query: 86 VESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTL 145
+ R +V +++L P V+A+ G A AGL +AL D + + +G+
Sbjct: 93 MREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVA-SATAKIIDGHTKLGVA- 150
Query: 146 PDYFAALF--RAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAK 203
AA+ VG A A + LL + + GEEA R+GLV D +E + A RLA+
Sbjct: 151 AGDHAAICWPLL-VGMAKA-KYYLLTCETLSGEEAERIGLVSTCVDDDEVLPTA-TRLAE 207
Query: 204 QLAGR 208
LA
Sbjct: 208 NLAQG 212
|
| >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 1e-22
Identities = 49/214 (22%), Positives = 88/214 (41%), Gaps = 33/214 (15%)
Query: 3 TLEKHGDVFVLTLTGSSDVDEHR------FGPPAIDSILSAIAKAKAEATPGSALITTSH 56
++E G V + L R P ++ + I A+A+ + + L+T +
Sbjct: 9 SVEHDGAVLRIRL--------DRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGA- 59
Query: 57 GKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGL 116
G+ F +G DL AG+ ++ VV A+ LP P +A V+G A G
Sbjct: 60 GRAFCSGGDLTGGDTAGAA-----------DAANRVVRAITSLPKPVIAGVHGAAVGFGC 108
Query: 117 TLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALF--RAKVGSATARRDVLLRAKKIK 174
+LAL+ D V+ ++ +GL PD A+ +G A R + A+KI
Sbjct: 109 SLALACDLVVA-APASYFQLAFTRVGLM-PDGGASALLPLL-IGRARTSRMAMT-AEKIS 164
Query: 175 GEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
A G++ ++E + + + ++G
Sbjct: 165 AATAFEWGMISHITSADEYESVL-TDVLRSVSGG 197
|
| >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 1e-22
Identities = 43/177 (24%), Positives = 69/177 (38%), Gaps = 8/177 (4%)
Query: 35 LSAIAKA--KAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV 92
+ + A A A ++ ++ G F G D + + RE M E+ R
Sbjct: 35 MREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRE-STKMAEAIRNF 93
Query: 93 VAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAAL 152
V + P + AVNG A G ++ D V +K G + PD + +
Sbjct: 94 VNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWA-NEKAWFQTPYTTFGQS-PDGCSTV 151
Query: 153 FRAK-VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
K +G A+A ++LL +K+ +EA GLV + E M K+LA
Sbjct: 152 MFPKIMGGASA-NEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEV-MVRIKELASC 206
|
| >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 2e-22
Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 7/159 (4%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNG 109
AL+ G+ F +G D+ A L + VV A+ + P P +AA++G
Sbjct: 64 ALVLAGEGRGFCSGGDVDEIIGATLSMDTARLLDFN-RMTGQVVRAVRECPFPVIAALHG 122
Query: 110 HAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALF--RAKVGSATARRDVL 167
AA AG LAL+ D+ + +GL+ D AA R VG A +L
Sbjct: 123 VAAGAGAVLALAADFRVA-DPSTRFAFLFTRVGLSGGDMGAAYLLPRV-VGLGHA-TRLL 179
Query: 168 LRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLA 206
+ ++ EA R+GL+ + A LA++LA
Sbjct: 180 MLGDTVRAPEAERIGLISELTEEGRADEAA-RTLARRLA 217
|
| >2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 3e-22
Identities = 41/177 (23%), Positives = 68/177 (38%), Gaps = 8/177 (4%)
Query: 35 LSAIAKA--KAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPV 92
+ I A A A ++ ++ G F G D R MV++ +
Sbjct: 53 IKEIVNALNSAAADDSKLVLFSAAGSVFCCGLDFG-YFVKHLRNNRNTASLEMVDTIKNF 111
Query: 93 VAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAAL 152
V + P V +VNG A G ++ D V +K G + PD +++
Sbjct: 112 VNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWA-NEKAWFQTPYTTFGQS-PDGCSSI 169
Query: 153 FRAK-VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
K +G A+A ++L+ +K+ EA GLV + + E M K+LA
Sbjct: 170 TFPKMMGKASA-NEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEV-MIQIKELASY 224
|
| >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 5e-22
Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 28/214 (13%)
Query: 3 TLEKHGDVFVLTLTGSSDVDEHR------FGPPAIDSILSAIAKAKAEATPGSALITTSH 56
E G V LTL +R F + A+ +A A+ +IT +
Sbjct: 6 RYEVKGQVAWLTL--------NRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGA- 56
Query: 57 GKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGL 116
G+ F G DL T + + + P++ A+ L P VAAVNG AA AG+
Sbjct: 57 GRAFCAGEDL------SGVTEEMDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGM 110
Query: 117 TLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALF--RAKVGSATARRDVLLRAKKIK 174
+LAL+ D+ ++ +K + + +GL PD + R VG A A ++ + +K+
Sbjct: 111 SLALACDFRLL-SEKASFAPAFIHVGLV-PDAGHLYYLPRL-VGRAKA-LELAVLGEKVT 166
Query: 175 GEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
EEA +GL + E + A++L+
Sbjct: 167 AEEAAALGLATKVIPLSDWEEEV-KQFAERLSAM 199
|
| >1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 9e-22
Identities = 35/171 (20%), Positives = 55/171 (32%), Gaps = 14/171 (8%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGA------RERLHYMVESFRPVVAAMMDLPMPT 103
I S G+FFS+G D A + + V V A +
Sbjct: 56 FTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVL 115
Query: 104 VAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAA-LFRAKVGSATA 162
+ +NG A L D V DK L ++GL + K G+ T
Sbjct: 116 ICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLI-TEGGTTVSLPLKFGTNTT 174
Query: 163 RRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASM-----RLAKQLAGR 208
+ L+ K K + G + ++ AEA L +++ G
Sbjct: 175 -YECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGL 224
|
| >3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256 | Back alignment and structure |
|---|
Score = 89.1 bits (222), Expect = 2e-21
Identities = 60/213 (28%), Positives = 87/213 (40%), Gaps = 26/213 (12%)
Query: 4 LEKHGDVFVLTLTGSSDVDEHR------FGPPAIDSILSAIAKAKAEATPGSALITTSHG 57
++ V LTL +R F D+ A+ A + L+T S G
Sbjct: 10 IDDDNRVRTLTL--------NRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGS-G 60
Query: 58 KFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLT 117
+ FS G DLA QA + E FR ++ A+ P P + AVNG G T
Sbjct: 61 RGFSAGTDLAEMQARITDPNFSEGKFG----FRGLIKALAGFPKPLICAVNGLGVGIGAT 116
Query: 118 LALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALF--RAKVGSATARRDVLLRAKKIKG 175
+ D M L +G+ P+ ++ + VG A +L+ ++ I
Sbjct: 117 ILGYADLAFM-SSTARLKCPFTSLGVA-PEAASSYLLPQL-VGRQNA-AWLLMSSEWIDA 172
Query: 176 EEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
EEALRMGLV EE + EA R A+ LA +
Sbjct: 173 EEALRMGLVWRICSPEELLPEA-RRHAEILAAK 204
|
| >3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 1e-20
Identities = 42/188 (22%), Positives = 68/188 (36%), Gaps = 11/188 (5%)
Query: 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDL---AWAQAAGSRTGARERL 82
+GP +AI +A+A+ ++T G+ F G L A +
Sbjct: 54 WGPDLAAGFYAAIDRAEADPGIRVIVLTGR-GRGFCAGAYLGSADAAAGYDKTMAKAKDA 112
Query: 83 HYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIG 142
+ + L P +AA+NG GLT AL D G
Sbjct: 113 NLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFA-AAGAKFAAVFARRG 171
Query: 143 LTLPDYFAALF--RAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMR 200
L ++ + R A A D+LL + EEA ++GLV+ E+ + A +
Sbjct: 172 LI-AEFGISWILPRL-TSWAVA-LDLLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRA-LE 227
Query: 201 LAKQLAGR 208
A+ +A
Sbjct: 228 YAEDIARY 235
|
| >3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 5e-20
Identities = 43/213 (20%), Positives = 71/213 (33%), Gaps = 27/213 (12%)
Query: 4 LEKHGDVFVLTLTGSSDVDEHR------FGPPAIDSILSAIAKAKAEATPGSALITTSHG 57
G V L + +R I A+ +A ++ +
Sbjct: 9 ANLEGGVLTLAI--------NRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGA-E 59
Query: 58 KFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLT 117
F+ G D+ A ++ + L P + AV G A G+T
Sbjct: 60 HDFTAGNDMKDFMGFVQNPNAGPAGQ---VPPFVLLKSAARLSKPLIIAVKGVAIGIGVT 116
Query: 118 LALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALF--RAKVGSATARRDVLLRAKKIKG 175
+ L D V + + + V +GL P+ A+ + G A ++L AKK
Sbjct: 117 ILLQADLVFA-DNTALFQIPFVSLGL-SPEGGASQLLVKQ-AGYHKA-AELLFTAKKFNA 172
Query: 176 EEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
E AL+ GLV + A+A A+ L
Sbjct: 173 ETALQAGLVNEIVEDAYATAQA---TAQHLTAL 202
|
| >3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276 | Back alignment and structure |
|---|
Score = 84.2 bits (209), Expect = 1e-19
Identities = 42/213 (19%), Positives = 76/213 (35%), Gaps = 27/213 (12%)
Query: 3 TLEKHGDVFVLTLTGSSDVDEHR------FGPPAIDSILSAIAKAKAEATPGSALITTSH 56
+ G + ++TL +R + + + T +A+IT +
Sbjct: 31 DVRADGALRIITL--------NRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGA- 81
Query: 57 GKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGL 116
G+ FS G D + + + + + R +V M +P VAAVNG A G
Sbjct: 82 GRAFSAGGDFGYLK---ELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGC 138
Query: 117 TLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALF--RAKVGSATARRDVLLRAKKIK 174
+L D V + + L V +GL L + A ++ L +I
Sbjct: 139 SLVALSDIVYI-AENAYLADPHVQVGLV-AADGGPLTWPLH-ISLLLA-KEYALTGTRIS 194
Query: 175 GEEALRMGLVEAAYDSEEQVAEASMRLAKQLAG 207
+ A+ +GL D ++ AK++
Sbjct: 195 AQRAVELGLANHVAD---DPVAEAIACAKKILE 224
|
| >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 4e-19
Identities = 38/213 (17%), Positives = 72/213 (33%), Gaps = 27/213 (12%)
Query: 4 LEKHGDVFVLTLTGSSDVDEHR------FGPPAIDSILSAIAKAKAEATPGSALITTSHG 57
LE+ G V ++T+ H + A D + + ++T + G
Sbjct: 20 LERDGGVLLVTV--------HTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGT-G 70
Query: 58 KFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLT 117
F N D ++ + ++ ++ + +P +AAVNG
Sbjct: 71 PSFCNEIDFTSFNLGTPHDWDE-----IIFEGQRLLNNLLSIEVPVIAAVNG-PVTNAPE 124
Query: 118 LALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALF--RAKVGSATARRDVLLRAKKIKG 175
+ + D V+ G+ P A + +GS R LL +++
Sbjct: 125 IPVMSDIVLAAESATFQDGPHFPSGIV-PGDGAHVVWPHV-LGSNRG-RYFLLTGQELDA 181
Query: 176 EEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
AL G V +E + A LA+ +A +
Sbjct: 182 RTALDYGAVNEVLSEQELLPRA-WELARGIAEK 213
|
| >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 5e-19
Identities = 28/161 (17%), Positives = 60/161 (37%), Gaps = 11/161 (6%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNG 109
+I T G + D + + + V+ ++D+ +P ++AVNG
Sbjct: 71 VVILTGSGDAWMAEIDFPSLGDVTNPREWDK----TYWEGKKVLQNLLDIEVPVISAVNG 126
Query: 110 HAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALF--RAKVGSATARRDVL 167
A L+ D ++ + M ++ G+ P + A +G R L
Sbjct: 127 AALLHS-EYILTTDIILASENTVFQDMPHLNAGIV-PGDGVHILWPLA-LGLYRG-RYFL 182
Query: 168 LRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
+K+ ++A + +V + + A +A+ LA +
Sbjct: 183 FTQEKLTAQQAYELNVVHEVLPQSKLMERA-WEIARTLAKQ 222
|
| >3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 5e-19
Identities = 34/211 (16%), Positives = 62/211 (29%), Gaps = 28/211 (13%)
Query: 31 IDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFR 90
I+ L + + + + ++ + F G D R + E
Sbjct: 36 IEECLQVLNQCETSTV--TVVVLEGLPEVFCFGADFQEIYQEMKRGRKQASSQ---EPLY 90
Query: 91 PVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFA 150
+ + P T++ V G A GL + D I +SE+ GL P
Sbjct: 91 DLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIA-DQTASFSLSELLFGL-YPACVL 148
Query: 151 ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEA-----------SM 199
++G A + L K I +EA GL++A + + +
Sbjct: 149 PFLIRRIGRQKAHY-MTLMTKPISVQEASEWGLIDAFDAESDVLLRKHLLRLRRLNKKGI 207
Query: 200 RLAKQL---------AGRKWAGEVYAEIRKS 221
KQ + A ++
Sbjct: 208 AHYKQFMSSLDHQVSRAKATALTANQDMFSD 238
|
| >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 6e-19
Identities = 41/179 (22%), Positives = 65/179 (36%), Gaps = 6/179 (3%)
Query: 31 IDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAW-AQAAGSRTGARERLHYMVESF 89
I ++ A+ +A + L+ G+ F G DL + R + + E+
Sbjct: 35 IAALHDALRRAMGDDHVH-VLVIHGPGRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEAC 93
Query: 90 RPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF 149
++ + P PT+A V G A AAGL L + D + V G
Sbjct: 94 SALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYA-SPAARFCLPGVQNGGFCTTPA 152
Query: 150 AALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
A+ R +G ++ L + AL GL+ E +A LA LA R
Sbjct: 153 VAVSRV-IGRRAV-TEMALTGATYDADWALAAGLINRIL-PEAALATHVADLAGALAAR 208
|
| >3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 9e-19
Identities = 37/182 (20%), Positives = 71/182 (39%), Gaps = 9/182 (4%)
Query: 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYM 85
+ + + A ++ ++ G F G DL+ A + GS + A +
Sbjct: 35 LSTALVSQLHQGLRDASSDPAV-RVVVLAHTGGTFCAGADLSEAGSGGSPSSAYDMAVER 93
Query: 86 VESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTL 145
++ A+++ +P +AA++GH A G L + D + ++E IG+
Sbjct: 94 AREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPR-SSFALTEARIGV-A 151
Query: 146 PDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLV-EAAYDSEEQVAEASMRLAKQ 204
P + K+ + A R L +K A +GL+ AA E + A +L
Sbjct: 152 PAIISLTLLPKLSARAAAR-YYLTGEKFDARRAEEIGLITMAA----EDLDAAIDQLVTD 206
Query: 205 LA 206
+
Sbjct: 207 VG 208
|
| >3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 1e-18
Identities = 39/195 (20%), Positives = 71/195 (36%), Gaps = 14/195 (7%)
Query: 26 FGPPAIDSILSAIAKAKAEATPGSALIT------TSHGKFFSNGFDLA------WAQAAG 73
F P +D + + A+ G L+T G F +G D + A+G
Sbjct: 81 FRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASG 140
Query: 74 SRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGV 133
+ V + +P + VNG AA G +L + D + R+
Sbjct: 141 DTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYAR 200
Query: 134 LYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQ 193
++ D+G Y +A +VG A R++ + E+ +MG V A + E
Sbjct: 201 FKQTDADVGSFDGGYGSAYLARQVGQKFA-REIFFLGRTYTAEQMHQMGAVNAVAEHAEL 259
Query: 194 VAEASMRLAKQLAGR 208
++ A ++ +
Sbjct: 260 ETVG-LQWAAEINAK 273
|
| >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 1e-18
Identities = 38/217 (17%), Positives = 68/217 (31%), Gaps = 37/217 (17%)
Query: 3 TLEKHGDVFVLTLTGSSDVDEHR------FGPPAIDSILSAIAKAKAEATPGSALITTSH 56
+E+ + TL R +++++ + A E P L+
Sbjct: 10 AIERRPAAWTFTL--------SRPEKRNALSAELVEALIDGVDAAHREQVP--LLVFAGA 59
Query: 57 GKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGL 116
G+ FS GFD + S R+ + + + P T+A +G AG+
Sbjct: 60 GRNFSAGFDFTDYETQ-SEGDLLLRMVRIEMLLQ----RVAGSPSLTLALAHGRNFGAGV 114
Query: 117 TLALSHDYVIMRRDKGVLYMSEVDIGLT-----LPDYFAALFRAKVGSATARRDVLLRAK 171
L + + + M + GL VG+ A +L A+
Sbjct: 115 DLFAACKWRYC-TPEAGFRMPGLKFGLVLGTRRFR-------DI-VGADQA-LSILGSAR 164
Query: 172 KIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
+EA R+G V + A A+
Sbjct: 165 AFDADEARRIGFVRDCAAQAQWPALI-DAAAEAATAL 200
|
| >2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 2e-18
Identities = 37/212 (17%), Positives = 79/212 (37%), Gaps = 32/212 (15%)
Query: 5 EKHGDVFVLTLTGSSDVDEHR------FGPPAIDSILSAIAKAKAEATPGSALITTSHGK 58
E V +T+ F P ++ + + ++T G
Sbjct: 8 ELGNGVVQITM--------KDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGY-GN 58
Query: 59 FFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTL 118
+FS+G + +T + + ++D +P +AA+ GH+ GL L
Sbjct: 59 YFSSGASKEFLI---RKTRGEVEVL-------DLSGLILDCEIPIIAAMQGHSFGGGLLL 108
Query: 119 ALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAA--LFRAKVGSATARRDVLLRAKKIKGE 176
L D+V+ + V + + G T P + L +GS A ++++ + +G+
Sbjct: 109 GLYADFVVF-SQESVYATNFMKYGFT-PVGATSLILREK-LGSELA-QEMIYTGENYRGK 164
Query: 177 EALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
E G+ ++ + A +L +++A
Sbjct: 165 ELAERGIPFPVVSRQDVLNYA-QQLGQKIAKS 195
|
| >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 3e-18
Identities = 36/167 (21%), Positives = 71/167 (42%), Gaps = 11/167 (6%)
Query: 50 ALITTSHGKFFSNGFDLA------WAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPT 103
A++ + GK F++G DL L ++ ++ + P P
Sbjct: 51 AVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPV 110
Query: 104 VAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDY--FAALFRAKVGSAT 161
+AA++G G+ L + D +D + EVD+GL D L + +G+ +
Sbjct: 111 IAAIHGGCIGGGVDLISACDIRYCTQD-AFFQVKEVDVGLA-ADVGTLQRLPKV-IGNRS 167
Query: 162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
++ A+K+ +EAL GLV + ++ + A+ LA ++ +
Sbjct: 168 LVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSK 214
|
| >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 7e-18
Identities = 30/186 (16%), Positives = 61/186 (32%), Gaps = 18/186 (9%)
Query: 31 IDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFR 90
+ + + + +++ + +++ +FF D+ + + V F+
Sbjct: 37 MRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELAASAPADVNVFQ 96
Query: 91 PVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLT------ 144
V + P T+ + G A G + D + L E +G+
Sbjct: 97 AVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGT 156
Query: 145 --LPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLA 202
L VG A +V+L A E A G + A ++E R+A
Sbjct: 157 QYLR-------GR-VGRNRA-LEVVLTADLFDAETAASYGWINRALPADELDEYV-DRVA 206
Query: 203 KQLAGR 208
+ +A
Sbjct: 207 RNIAAL 212
|
| >3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 9e-18
Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 13/189 (6%)
Query: 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERL--H 83
+ + + + +IT + GK F +G D A G +
Sbjct: 48 MAFDVMLPFKQMLVDISHDNDVRAVVITGA-GKGFCSGADQKSAGPIPHIGGLTQPTIAL 106
Query: 84 YMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGL 143
+E V+ + + P +AA+NG A GL LAL+ D + + ++ GL
Sbjct: 107 RSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVA-SQDAYFRAAGINNGL 165
Query: 144 TLPD----YFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASM 199
T + Y L RA +G++ A D++L + + +EA R+GLV SE + E
Sbjct: 166 TASELGLSYL--LPRA-IGTSRA-SDIMLTGRDVDADEAERIGLVSRKVASESLLEEC-Y 220
Query: 200 RLAKQLAGR 208
+ +++AG
Sbjct: 221 AIGERIAGF 229
|
| >3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 1e-17
Identities = 53/212 (25%), Positives = 85/212 (40%), Gaps = 28/212 (13%)
Query: 3 TLEKHGDVFVLTLTGSSDVDEHR------FGPPAIDSILSAIAKAKAEATPGSALITTSH 56
E V VLTL H F + +A + + ++T +
Sbjct: 10 HEEIRDGVAVLTL--------HGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGA- 60
Query: 57 GKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGL 116
F +G ++ A + + S PV A +L P +AAVNGHA G+
Sbjct: 61 PPAFCSGAQISAAAETFAAPRNPDF------SASPVQPAAFELRTPVIAAVNGHAIGIGM 114
Query: 117 TLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALF--RAKVGSATARRDVLLRAKKIK 174
TLAL D I+ ++G + +V G+ PD A R VG+A A ++LL
Sbjct: 115 TLALHADIRIL-AEEGRYAIPQVRFGV-APDALAHWTLPRL-VGTAVA-AELLLTGASFS 170
Query: 175 GEEALRMGLVEAAYDSEEQVAEASMRLAKQLA 206
+ A+ GL + + + A +R+A +A
Sbjct: 171 AQRAVETGLANRCLPAGKVLGAA-LRMAHDIA 201
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556 | Back alignment and structure |
|---|
Score = 79.7 bits (196), Expect = 2e-17
Identities = 39/219 (17%), Positives = 74/219 (33%), Gaps = 16/219 (7%)
Query: 3 TLEKHGDVFVLTLTGSSDVDEHRFGPPA--------IDSILSAIAKAKAEATP-GSALIT 53
L +G V L + + D + AI + + E + ++T
Sbjct: 24 KLSFNGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLT 83
Query: 54 TSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAA 113
+ + F +G ++ + + E+ + + + +AAVNG A
Sbjct: 84 SLKDRVFCSGANIF-MLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAG 142
Query: 114 AGLTLALSHDYVIMRRD-KGVLYMSEVDIGLTLPDYFAA---LFRAKVGSATARRDVLLR 169
G LAL+ D + + D + + EV + LP + KV A
Sbjct: 143 GGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRA-DIFCTV 201
Query: 170 AKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
+ ++GE A LV+ + A +LA +
Sbjct: 202 VEGVRGERAKAWRLVDEVVKPNQFDQAI-QARALELAAQ 239
|
| >3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 4e-17
Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 5/159 (3%)
Query: 50 ALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNG 109
++ ++GK FS G DL + + + ++P P++AAV G
Sbjct: 67 VIVLRANGKHFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQG 126
Query: 110 HAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLR 169
+ GL L D +I + + V + + +Y +G A +++L
Sbjct: 127 RCISGGLLLCWPCDLIIA-AEDALFSDPVVLMDIGGVEYH-GHTWE-LGPRKA-KEILFT 182
Query: 170 AKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
+ + EE + G+V + AE LA ++A
Sbjct: 183 GRAMTAEEVAQTGMVNRVVPRDRLDAET-RALAGEIAKM 220
|
| >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 5e-17
Identities = 40/207 (19%), Positives = 69/207 (33%), Gaps = 32/207 (15%)
Query: 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE----- 80
+ + + +A + ++ + G+ F GFDL+ S G
Sbjct: 59 IVADTPLELSALVERADLDPDVH-VILVSGRGEGFCAGFDLSAYAEGSSSAGGGSPYEGT 117
Query: 81 --------------------RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLAL 120
+ M+ F A++M PTV ++G+ A G +AL
Sbjct: 118 VLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIAL 177
Query: 121 SHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALR 180
D VI D + + + +G A+R +L I G +A
Sbjct: 178 HADQVIAAAD-AKIGYPPMRVWGVPAAGL--WAHR-LGDQRAKR-LLFTGDCITGAQAAE 232
Query: 181 MGLVEAAYDSEEQVAEASMRLAKQLAG 207
GL A D + A RL +++A
Sbjct: 233 WGLAVEAPDPADLDART-ERLVERIAA 258
|
| >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 6e-17
Identities = 39/222 (17%), Positives = 76/222 (34%), Gaps = 41/222 (18%)
Query: 3 TLEKHGDVFVLTLTGSSDVDEHRFGPPA-------IDSILSAIAKAKAEATPGSALITTS 55
+ V V+ PP + ++ ++ K + + + ++T+
Sbjct: 8 EPDAGAGVAVMKF--------KN--PPVNSLSLEFLTELVISLEKLENDKSFRGVILTSD 57
Query: 56 HGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAG 115
FS G DL S + E + + + V+A+NG A G
Sbjct: 58 RPGVFSAGLDLT-EMCGRSPAHYAGYWKAVQELWL----RLYQSNLVLVSAINGACPAGG 112
Query: 116 LTLALSHDYVIMRRD-KGVLYMSEVDIGL--------TLPDYFAALFRAKVGSATARRDV 166
+AL+ DY I+ + + + ++E +G+ TL +G A
Sbjct: 113 CLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLE-------NT-IGHRAA-ERA 163
Query: 167 LLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
L EAL++G+V+ E+ + A + Q
Sbjct: 164 LQLGLLFPPAEALQVGIVDQVVPEEQVQSTA-LSAIAQWMAI 204
|
| >3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 7e-17
Identities = 48/213 (22%), Positives = 74/213 (34%), Gaps = 37/213 (17%)
Query: 4 LEKHGDVFVLTLTGSSDVDEHR------FGPPAIDSILSAIAKAKAEATPGSALITTSHG 57
+ + V + L R ++ + AI KA + A++ T G
Sbjct: 25 ITQAEAVLTIEL--------QRPERRNALNSQLVEELTQAIRKAGDGSA--RAIVLTGQG 74
Query: 58 KFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLT 117
F G DL+ + + AM PMP V A+NG A AGL
Sbjct: 75 TAFCAGADLS----------GDAFAADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQ 124
Query: 118 LALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAA--LFRAKVGSATARRDVLLRAKKIKG 175
LA+ D ++ GL D ++ L VG A R +LL A+K+
Sbjct: 125 LAMQCDLRVV-APDAFFQFPTSKYGLA-LDNWSIRRLSSL-VGHGRA-RAMLLSAEKLTA 180
Query: 176 EEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
E AL G+ + + A ++A
Sbjct: 181 EIALHTGMANRIGTLAD-----AQAWAAEIARL 208
|
| >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 7e-17
Identities = 40/182 (21%), Positives = 71/182 (39%), Gaps = 17/182 (9%)
Query: 31 IDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFR 90
+ + + A + ++ ++GK FS G DL W Q+ + T E
Sbjct: 33 LTEMRIRLDSAINDTNVR-VIVLKANGKHFSAGADLTWMQSMANFT--EEENLEDSLVLG 89
Query: 91 PVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFA 150
++ ++ P PT+A V G A G LA + D I SEV +GL
Sbjct: 90 NLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIA-STSARFCFSEVKLGL-----IP 143
Query: 151 A-----LFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
A + RA +G A+ + + A+ A + LV+ + + ++ A Q+
Sbjct: 144 AVISPYVVRA-IGERAAKM-LFMSAEVFDATRAYSLNLVQHCVPDDTLLEFT-LKYASQI 200
Query: 206 AG 207
+
Sbjct: 201 SN 202
|
| >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 8e-17
Identities = 43/212 (20%), Positives = 81/212 (38%), Gaps = 24/212 (11%)
Query: 4 LEKHGDVFVLTLTGSSDVDEHR------FGPPAIDSILSAIAKAKAEATPGSALITTSHG 57
E +V V+TL F S+ A+A+A A+ + + ++
Sbjct: 4 EENSDEVRVITL--------DHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAE 55
Query: 58 KFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLT 117
+ FS G D + E ++ + A++++ PT+AAV+G+A G
Sbjct: 56 RSFSAGGDFNEVKQLSRSEDIEE----WIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQ 111
Query: 118 LALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAA-LFRAKVGSATARRDVLLRAKKIKGE 176
AL D +M M E+ G+ AA L G +T ++++ + + +
Sbjct: 112 FALMFDQRLM-ASTANFVMPELKHGIG-CSVGAAILGFT-HGFSTM-QEIIYQCQSLDAP 167
Query: 177 EALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
+ LV +S + A + A +A
Sbjct: 168 RCVDYRLVNQVVESSALLDAA-ITQAHVMASY 198
|
| >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 8e-17
Identities = 42/221 (19%), Positives = 76/221 (34%), Gaps = 40/221 (18%)
Query: 3 TLEKHGDVFVLTLTGSSDVDEHRFGPPA-------IDSILSAIAKAKAEATPGSALITTS 55
T+ K + + L H + +AI + + ++ +
Sbjct: 12 TVFKEDGIAEIHL--------HI--NKSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSD 61
Query: 56 HGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAG 115
KFFS G D+ + + + + P +A + GH G
Sbjct: 62 VPKFFSAGADIN-FLRSADPRFKTQ----FCLFCNETLDKIARSPQVYIACLEGHTVGGG 116
Query: 116 LTLALSHDYVIMRRDKGVLYMSEVDIGLT--------LPDYFAALFRAKVGSATARRDVL 167
L +AL+ D M + G + + EV +G+ L R +G + A D+
Sbjct: 117 LEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLA-------RL-IGYSRA-LDMN 167
Query: 168 LRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
+ + I +EAL +GLV + E A++LA
Sbjct: 168 ITGETITPQEALEIGLVNRVFPQAETRERT-REYARKLANS 207
|
| >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 3e-16
Identities = 35/186 (18%), Positives = 63/186 (33%), Gaps = 20/186 (10%)
Query: 31 IDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFR 90
+ +++ + + P + ++ FF D+ + A+ S
Sbjct: 36 VRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMT-KVPEYTAEAAKA-GGPGDASLG 93
Query: 91 PVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLT------ 144
+ + LP T+A + G A AG L+ D R+ +L EV IG
Sbjct: 94 MLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAI 153
Query: 145 --LPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLA 202
L R +G A + +L + + A R G V A E +A
Sbjct: 154 QHLT-------RL-LGRGRA-LEAVLTSSDFDADLAERYGWVNRAVPDAELDEFV-AGIA 203
Query: 203 KQLAGR 208
+++G
Sbjct: 204 ARMSGF 209
|
| >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 4e-16
Identities = 65/215 (30%), Positives = 94/215 (43%), Gaps = 31/215 (14%)
Query: 5 EKHGDVFVLTLTGSSDVDEHR------FGPPAIDSILSAIAKAKAEATPGSALITTSHGK 58
+ G V V+ L + P S+L A+ +A+ A++ T GK
Sbjct: 4 VEKGHVAVVFL--------NDPERRNPLSPEMALSLLQALDDLEADPGVR-AVVLTGRGK 54
Query: 59 FFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTL 118
FS G DLA+ + H S + + P PTVAAVNG A A G L
Sbjct: 55 AFSAGADLAFLERVTELGAEENYRH--SLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGL 112
Query: 119 ALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAA-----LFRAKVGSATARRDVLLRAKKI 173
AL+ D V+M ++ L +EV IG AA L RA VG A +D+LL + +
Sbjct: 113 ALACDLVVM-DEEARLGYTEVKIGF-----VAALVSVILVRA-VGEKAA-KDLLLTGRLV 164
Query: 174 KGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
+ EA +GLV + + EA LA+++A
Sbjct: 165 EAREAKALGLVNRIAPPGKALEEA-KALAEEVAKN 198
|
| >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 1e-15
Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 11/179 (6%)
Query: 31 IDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFR 90
+ ++ A + + A++ + GK F G DL +A SR + +
Sbjct: 55 LAALGEAFGTLAEDESVR-AVVLAASGKAFCAGHDLKEMRAEPSREYYEKLFARCTDVML 113
Query: 91 PVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFA 150
A+ LP P +A V+G A AAG L D + +S +++GL
Sbjct: 114 ----AIQRLPAPVIARVHGIATAAGCQLVAMCDLAVA-TRDARFAVSGINVGL-FCSTPG 167
Query: 151 -ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
AL R VG A ++L+ + + ++A +GLV + E + ++ +
Sbjct: 168 VALSRN-VGRKAA-FEMLVTGEFVSADDAKGLGLVNRVVAPKALDDEI-EAMVSKIVAK 223
|
| >2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 2e-15
Identities = 37/184 (20%), Positives = 74/184 (40%), Gaps = 9/184 (4%)
Query: 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYM 85
F P + ++ A ++A+ + ++T F +G D G + +
Sbjct: 37 FTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNV 96
Query: 86 VESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTL 145
++ R + +P P +A V G+A G L + D I D + + +G +
Sbjct: 97 LDLQR----LIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAA-DNAIFGQTGPKVG-SF 150
Query: 146 PDYFAALFRAK-VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQ 204
+ + + A+ VG AR ++ ++ +EAL MGLV E+ E ++ K+
Sbjct: 151 DAGYGSGYLARIVGHKKAR-EIWYLCRQYNAQEALDMGLVNTVVPLEKVEDET-VQWCKE 208
Query: 205 LAGR 208
+
Sbjct: 209 IMKH 212
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 5e-15
Identities = 52/216 (24%), Positives = 87/216 (40%), Gaps = 26/216 (12%)
Query: 3 TLEKHGD-VFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFS 61
+E GD V V+TL + + ++ S +A + A++ T FS
Sbjct: 10 VMEVGGDGVAVITLINPP---VNSLSFDVLYNLKSNYEEALSRNDV-KAIVITGAKGRFS 65
Query: 62 NGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALS 121
GFD++ + G + S + + P+VAA++G A GL LA++
Sbjct: 66 GGFDISGFGEM--QKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMA 123
Query: 122 HDYVIMRRDKGVLYMSEVDIGLT--------LPDYFAALFRAKVGSATARRDVLLRAKKI 173
I L + E+ +G+ LP VG A +++L +K +
Sbjct: 124 CHARIS-APAAQLGLPELQLGVIPGFGGTQRLP--------RLVGLTKA-LEMILTSKPV 173
Query: 174 KGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRK 209
K EE +GL++A E V A R A + GR+
Sbjct: 174 KAEEGHSLGLIDAVVPPAELVTTA-RRWALDIVGRR 208
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 7e-15
Identities = 44/193 (22%), Positives = 80/193 (41%), Gaps = 22/193 (11%)
Query: 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYM 85
F ++ + A+ KA+A+ +I +S F G D+ L
Sbjct: 32 FNRLTLNELRQAVDAIKADASV-KGVIVSSGKDVFIVGADITEFVEN--FKLPDAELIAG 88
Query: 86 VESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLT- 144
+ + DL +PTVAA+NG A GL + L+ D+ +M D + + EV +G+
Sbjct: 89 NLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVM-ADSAKIGLPEVKLGIYP 147
Query: 145 -------LPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEA 197
LP +G A + + K+ + E+AL++ V+A +++ A A
Sbjct: 148 GFGGTVRLP--------RLIGVDNA-VEWIASGKENRAEDALKVSAVDAVVTADKLGAAA 198
Query: 198 SMRLAKQLAGRKW 210
+ L K+ +
Sbjct: 199 -LDLIKRAISGEL 210
|
| >3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 8e-15
Identities = 42/221 (19%), Positives = 75/221 (33%), Gaps = 29/221 (13%)
Query: 3 TLEKHGDVFVLTLTGSSDVDEHR--FGPPAIDSILSAIAKAKAEATPGS----ALITTSH 56
E DV+ + + ++ R F +D I ++ S
Sbjct: 35 IEEPQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASD 94
Query: 57 GKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAM---MDLPMPTVAAVNGHAAA 113
F+ G DLA R G R RL + V A + ++A V G+A
Sbjct: 95 SDVFNLGGDLA-LFCQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALG 153
Query: 114 AGLTLALSHDYVIMRRDKGVLYMSEVDIGLT--------LPDYFAALFRAKVGSATARRD 165
G ALS +I + ++ + EV L + + + + A +
Sbjct: 154 GGFEAALSCHTIIA-EEGVMMGLPEVLFDLFPGMGAYSFMC-------QR-ISAHLA-QK 203
Query: 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLA 206
++L E+ L MGLV+ + VA ++ ++
Sbjct: 204 IMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAV-EQVIRESK 243
|
| >2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 1e-14
Identities = 38/213 (17%), Positives = 76/213 (35%), Gaps = 22/213 (10%)
Query: 4 LEKHGDVFVLTLTGSSDVDEHR------FGPPAIDSILSAIAKAKAEATPGSALITTSHG 57
+E + + L +R P ++ + + + G L+ T G
Sbjct: 13 VEIEDGIAFVIL--------NRPEKRNAMSPTLNREMIDVLETLEQDPAAG-VLVLTGAG 63
Query: 58 KFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLT 117
+ ++ G DL + E+ + + PT+A VNG G +
Sbjct: 64 EAWTAGMDLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFS 123
Query: 118 LALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAA--LFRAKVGSATARRDVLLRAKKIKG 175
++ D I D+ +SE++ G+ P + + VG + ++ K G
Sbjct: 124 PLVACDLAIC-ADEATFGLSEINWGI-PPGNLVSKAMADT-VGHRQS-LMYIMTGKTFGG 179
Query: 176 EEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
++A MGLV + + + LA+ L +
Sbjct: 180 QKAAEMGLVNESVPLAQLREVT-IELARNLLEK 211
|
| >3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 2e-13
Identities = 39/186 (20%), Positives = 75/186 (40%), Gaps = 12/186 (6%)
Query: 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAW-AQAAGSRTGARERLHY 84
F P + ++ A+A A+ + G ++T + K F +G D G + +
Sbjct: 52 FRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLN 111
Query: 85 MVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLT 144
+++ R + P P VA V G++ G L + D I D + + +G +
Sbjct: 112 VLDFQR----QIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAA-DNAIFGQTGPKVG-S 165
Query: 145 LPDYFAA--LFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLA 202
+ A + R VG AR ++ ++ ++AL MGLV + E +R
Sbjct: 166 FDGGWGASYMARI-VGQKKAR-EIWFLCRQYDAKQALDMGLVNTVVPLADLEKET-VRWC 222
Query: 203 KQLAGR 208
+++
Sbjct: 223 REMLQN 228
|
| >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265 | Back alignment and structure |
|---|
Score = 66.7 bits (164), Expect = 2e-13
Identities = 42/186 (22%), Positives = 79/186 (42%), Gaps = 24/186 (12%)
Query: 31 IDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFR 90
++ + + + + EA ++T + K F G DL +A + R V R
Sbjct: 38 LEELQNILTQINEEANTRVVILTGAGEKAFCAGADLK-ERAGMNEEQVRH----AVSMIR 92
Query: 91 PVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLT------ 144
+ + LP P +AA+NG A G L+L+ D+ I + L ++E + +
Sbjct: 93 TTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIA-AESASLGLTETTLAIIPGAGGT 151
Query: 145 --LPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLA 202
LP R +G A ++++ ++I +EA GLVE +A + +A
Sbjct: 152 QRLP-------RL-IGVGRA-KELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKA-IEIA 201
Query: 203 KQLAGR 208
+++A
Sbjct: 202 EKIASN 207
|
| >3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 5e-13
Identities = 50/214 (23%), Positives = 82/214 (38%), Gaps = 29/214 (13%)
Query: 2 CTLEKHGDVFVLTLTGSSDVDEHR------FGPPAIDSILSAIAKAKAEATPGSALITTS 55
+EK G V + L +R P ++L+A + A+ A++
Sbjct: 13 VRVEKAGPVTTVIL--------NRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGD 64
Query: 56 HGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAG 115
F G DL A P+ + + L P +AA++GHA A G
Sbjct: 65 -NGTFCAGADLK-AMGTDRGNELHP------HGPGPMGPSRLRLSKPVIAAISGHAVAGG 116
Query: 116 LTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFR--AKVGSATARRDVLLRAKKI 173
+ LAL D ++ + VL + G+ L D R +G + A D++L + +
Sbjct: 117 IELALWCDLRVV-EEDAVLGVFCRRWGVPLID--GGTIRLPRLIGHSRA-MDLILTGRPV 172
Query: 174 KGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAG 207
EAL +GLV + A LA ++A
Sbjct: 173 HANEALDIGLVNRVVARGQAREAA-ETLAAEIAA 205
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 7e-13
Identities = 45/216 (20%), Positives = 81/216 (37%), Gaps = 35/216 (16%)
Query: 3 TLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSN 62
L + ++ L + P I + + + KA ++ T A++ F
Sbjct: 24 YLRLPHSLAMIRLCNPP---VNAVSPTVIREVRNGLQKAGSDHTV-KAIVICGANGNFCA 79
Query: 63 GFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSH 122
G D+ A +V + P +AA+ G A GL LAL
Sbjct: 80 GADIHGFSAFTPGLALGS-----------LVDEIQRYQKPVLAAIQGVALGGGLELALGC 128
Query: 123 DYVIMRRDKGVLYMSEVDIGLT--------LPDYFAALFRAKVGSATARRDVLLRAKKIK 174
Y I K + + EV +G+ LP VG A D++ K +
Sbjct: 129 HYRIA-NAKARVGLPEVTLGILPGARGTQLLP--------RVVGVPVA-LDLITSGKYLS 178
Query: 175 GEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKW 210
+EALR+G+++A S+ E +++ A+++ +
Sbjct: 179 ADEALRLGILDAVVKSDP--VEEAIKFAQKIIDKPI 212
|
| >4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 7e-13
Identities = 48/221 (21%), Positives = 84/221 (38%), Gaps = 42/221 (19%)
Query: 3 TLEKHGDVFVLTLTGSSDVDEHRFGPPA-------IDSILSAIAKAKAEATPGSALITTS 55
++ + L + R PP I++A + G A++
Sbjct: 27 SVVADQGLATLVV--------SR--PPTNAMTRQVYREIVAAADELGRRDDIG-AVVLFG 75
Query: 56 HGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAG 115
+ FS G D+ + + + A+ +P PTVAAV G+A AG
Sbjct: 76 GHEIFSAGDDMPELRTLNAPEADT-----AARVRLEAIDAVAAIPKPTVAAVTGYALGAG 130
Query: 116 LTLALSHDYVIMRRDKGVLYMSEVDIGLT--------LPDYFAALFRAKVGSATARRDVL 167
LTLAL+ D+ + D +E+ GL L R VGS+ A ++++
Sbjct: 131 LTLALAADWRVS-GDNVKFGATEILAGLIPGGGGMGRLT-------RV-VGSSRA-KELV 180
Query: 168 LRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
+ EEAL +GL++ ++ A + A++
Sbjct: 181 FSGRFFDAEEALALGLIDDMVAPDDVYDSA-VAWARRYLEC 220
|
| >3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 1e-12
Identities = 54/214 (25%), Positives = 81/214 (37%), Gaps = 28/214 (13%)
Query: 3 TLEKHGDVFVLTLTGSSDVDEHRFGPPAI----DSILSAIAKA--KAEATPG-SALITTS 55
+ + G V V+ L +R P ++L +A A + E A +
Sbjct: 12 RIRRDGYVLVIGL--------NR--PAKRNAFDKTMLEELALALGEYETDTDLRAAVLYG 61
Query: 56 HGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAG 115
G F+ G DLA + AA + GA P L P + AV+G G
Sbjct: 62 EGPLFTAGLDLA-SVAAEIQGGASL---TPEGGINPWQVDGRQLSKPLLVAVHGKVLTLG 117
Query: 116 LTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFR--AKVGSATARRDVLLRAKKI 173
+ LAL+ D VI + EV+ G+ P A R G A +L A
Sbjct: 118 IELALAADIVIA-DETATFAQLEVNRGI-YPF-GGATIRFPRTAGWGNA-MRWMLTADTF 173
Query: 174 KGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAG 207
EA R+G+V+ E V A + +A+ +A
Sbjct: 174 DAVEAHRIGIVQEIVPVGEHVDTA-IAIAQTIAR 206
|
| >3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 1e-12
Identities = 38/220 (17%), Positives = 70/220 (31%), Gaps = 39/220 (17%)
Query: 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAI----DSILSAIAKAKAEATPG-SALITTSH 56
++ G V + L +R P D +++A+ + A++
Sbjct: 18 LVVDTVGPVLTIGL--------NR--PKKRNALNDGLMAALKDCLTDIPDQIRAVVIHGI 67
Query: 57 GKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGL 116
G FS G DL+ T F + +P +AA+ G GL
Sbjct: 68 GDHFSAGLDLS-ELRERDATEGLVHSQTWHRVFD----KIQYCRVPVIAALKGAVIGGGL 122
Query: 117 TLALSHDYVIMRRDKGVLYMSEVDIGLT--------LPDYFAALFRAKVGSATARRDVLL 168
LA + + + E G+ LP R +G A D++L
Sbjct: 123 ELACAAHIRVA-EASAYYALPEGSRGIFVGGGGSVRLP-------RL-IGVARM-ADMML 172
Query: 169 RAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
+ E + G + ++ +A + L ++A
Sbjct: 173 TGRVYSAAEGVVHGFSQYLIENGSAYDKA-LELGNRVAQN 211
|
| >4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 1e-12
Identities = 40/190 (21%), Positives = 72/190 (37%), Gaps = 16/190 (8%)
Query: 26 FGPPAIDSILSAIAKAKAEATPGSALIT-----TSHGKFFSNGFDLAWAQAAGSRTGARE 80
F P + + A A+ + G L+T + F +G D + G
Sbjct: 34 FRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGGYIDDQGT 93
Query: 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVD 140
+++ R + +P +A V G+A G L L D I D + +
Sbjct: 94 PRLNVLDLQR----LIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAA-DNAIFGQTGPK 148
Query: 141 IGLTLPDYFAA--LFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEAS 198
+G + F + L R VG AR ++ ++ +EA RMG+V + E
Sbjct: 149 VG-SFDGGFGSSYLARI-VGQKKAR-EIWYLCRQYSAQEAERMGMVNTVVPVDRLEEEG- 204
Query: 199 MRLAKQLAGR 208
++ AK++ +
Sbjct: 205 IQWAKEILSK 214
|
| >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261 | Back alignment and structure |
|---|
Score = 64.4 bits (158), Expect = 1e-12
Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 41/221 (18%)
Query: 3 TLEKHGDVFVLTLTGSSDVDEHRFGPPA-------IDSILSAIAKAKAEATPGSALITTS 55
++ + V TL + PA + + I + + + +I
Sbjct: 9 SVRVEDHIAVATL--------NH--APANAMSSQVMHDVTELIDQVEKDDNIRVVVIHGE 58
Query: 56 HGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAG 115
G+FFS G D+ + A E +F + P +AA++G A G
Sbjct: 59 -GRFFSAGADIKEFTSVTEAKQATELAQLGQVTFE----RVEKCSKPVIAAIHGAALGGG 113
Query: 116 LTLALSHDYVIMRRDKGVLYMSEVDIGLT--------LPDYFAALFRAKVGSATARRDVL 167
L A+S + L + E+ +GL LP R VG A A +++
Sbjct: 114 LEFAMSCHMRFA-TESAKLGLPELTLGLIPGFAGTQRLP-------RY-VGKAKA-CEMM 163
Query: 168 LRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
L + I G EAL+ GLV + E + + +++AKQ+AG+
Sbjct: 164 LTSTPITGAEALKWGLVNGVFAEETFLDDT-LKVAKQIAGK 203
|
| >3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 2e-12
Identities = 41/221 (18%), Positives = 80/221 (36%), Gaps = 35/221 (15%)
Query: 3 TLEKHGDVFVLTLTGSSDVDEHR------FGPPAIDSILSAIAKAKAEATPGSALITTSH 56
E G +TL +R P I + +A +A+ + ++T +
Sbjct: 14 KYEVDGHTATITL--------NRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGT- 64
Query: 57 GKFFSNGFDLAWAQAAGSRTGARERL--HYMVESFRPVVAAMMDLPMPTVAAVNGHAAAA 114
G+ F +G D+ G R L + E+ + + P + AVNG A
Sbjct: 65 GRAFCSGADVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGA 124
Query: 115 GLTLALSHDYVIMRRDKGVLYMSEVDIGLT-------LPDYFAALFRAKVGSATARRDVL 167
G+ + D VI ++ + V IGL + R + + A R L
Sbjct: 125 GMDWVTTTDIVIA-SEQATFFDPHVSIGLVAGRELVRVS-------RV-LPRSIALRMAL 175
Query: 168 L-RAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAG 207
+ + +++ + A +GL+ + + + A +A +
Sbjct: 176 MGKHERMSAQRAYELGLISEIVEHDRLLERA-HEIADIVNS 215
|
| >3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 2e-12
Identities = 52/221 (23%), Positives = 81/221 (36%), Gaps = 42/221 (19%)
Query: 3 TLEKHGDVFVLTLTGSSDVDEHRFGPP----AIDS-ILSAIAKA--KAEATPG-SALITT 54
T E+ G +F++ L R A DS +L+ +A A + E + +
Sbjct: 15 TREQRGHLFLIGL--------DR---AGKRNAFDSAMLADLALAMGEYERSEESRCAVLF 63
Query: 55 SHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAA 114
+HG+ F+ G DL + A Y P P V AV G A
Sbjct: 64 AHGEHFTAGLDLM----ELAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTA 119
Query: 115 GLTLALSHDYVIMRRDKGVLYMSEVDIGLT--------LPDYFAALFRAKVGSATARRDV 166
G+ L L+ D + EV G+ P RA G A
Sbjct: 120 GIELMLNADIAVA-ARGTRFAHLEVLRGIPPLGGSTVRFP-------RA-AGWTDA-MRY 169
Query: 167 LLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAG 207
+L + +EALRM L+ + E++A A + A+++A
Sbjct: 170 ILTGDEFDADEALRMRLLTEVVEPGEELARA-LEYAERIAR 209
|
| >1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 2e-12
Identities = 45/222 (20%), Positives = 88/222 (39%), Gaps = 40/222 (18%)
Query: 4 LEKHGDVFVLTLTGSSDVDEHR------FGPPAIDSILSAIAKAKAEATPGSALITTSHG 57
E++ + VL + +R I + A+ K++ + +I +
Sbjct: 16 EEENRGIVVLGI--------NRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVP 67
Query: 58 KFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLT 117
F G DL S V R V+ + +LP+PT+AA++G A GL
Sbjct: 68 GIFCAGADLKERAKMSSSEVGP-----FVSKIRAVINDIANLPVPTIAAIDGLALGGGLE 122
Query: 118 LALSHDYVIMRRDKGVLYMSEVDIGLT--------LPDYFAALFRAKVGSATARRDVLLR 169
LAL+ D + + + E + + LP RA +G + A ++++
Sbjct: 123 LALACDIRVA-ASSAKMGLVETKLAIIPGGGGTQRLP-------RA-IGMSLA-KELIFS 172
Query: 170 AKKIKGEEALRMGLVEAAYDSEE---QVAEASMRLAKQLAGR 208
A+ + G+EA +GL+ + + ++ LA++ +
Sbjct: 173 ARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQ 214
|
| >1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 3e-12
Identities = 35/222 (15%), Positives = 73/222 (32%), Gaps = 45/222 (20%)
Query: 4 LEKHGDVFVLTLTGSSDVDEHRFGPPA--------IDSILSAIAKAKAEATPGSALITTS 55
+ V V+ + ID ++ A++ ++
Sbjct: 8 VVTINKVAVIEF--------NY--GRKLNALSKVFIDDLMQALSDLNRPEI-RCIILRAP 56
Query: 56 HG-KFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAA 114
G K FS G D+ +G R + R + + P P ++ V G
Sbjct: 57 SGSKVFSAGHDIH-ELPSGGRDPL-----SYDDPLRQITRMIQKFPKPIISMVEGSVWGG 110
Query: 115 GLTLALSHDYVIMRRDKGVLYMSEVDIGLT--------LPDYFAALFRAKVGSATARRDV 166
+ +S D +I M+ V++G+ L R G +++
Sbjct: 111 AFEMIMSSDLIIA-ASTSTFSMTPVNLGVPYNLVGIHNLT-------RD-AGFHIV-KEL 160
Query: 167 LLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
+ A I + AL +G++ + EE +++A ++ +
Sbjct: 161 IFTASPITAQRALAVGILNHVVEVEELEDFT-LQMAHHISEK 201
|
| >3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 4e-12
Identities = 45/215 (20%), Positives = 78/215 (36%), Gaps = 40/215 (18%)
Query: 4 LEKHGDVFVLTLTGSSDVDEHRFGPPA--------IDSILSAIAKAKAEATPGSALITTS 55
++ V LTL +R P + + A++ A+ + ++T +
Sbjct: 13 VDTTDRVRTLTL--------NR--PQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGA 62
Query: 56 HGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAG 115
F G DL + D+ P + A+NG A G
Sbjct: 63 -DPVFCAGLDLKELGDTTEL--------------PDISPKWPDMTKPVIGAINGAAVTGG 107
Query: 116 LTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAA--LFRAKVGSATARRDVLLRAKKI 173
L LAL D +I + + +GL +P + + L + VG A R + L +
Sbjct: 108 LELALYCDILIA-SENAKFADTHARVGL-MPTWGLSVRLPQK-VGVGLA-RRMSLTGDYL 163
Query: 174 KGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
++ALR GLV ++ + A R+A + G
Sbjct: 164 SAQDALRAGLVTEVVAHDDLLTAA-RRVAASIVGN 197
|
| >4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 6e-12
Identities = 42/214 (19%), Positives = 77/214 (35%), Gaps = 24/214 (11%)
Query: 2 CTLEKHGDVFVLTLTGSSDVDEHR------FGPPAIDSILSAIAKAKAEATPGSALITTS 55
+E+ G ++T+ +R + ++ A + + ++T +
Sbjct: 22 ALVEQRGHTLIVTM--------NRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGA 73
Query: 56 HGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAG 115
G +F G DL A ++ S + L P +AAV G A A G
Sbjct: 74 -GGYFCAGMDLKAATKKPPGDSFKDG--SYDPSRIDALLKGRRLKKPLIAAVEGPAIAGG 130
Query: 116 LTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFR--AKVGSATARRDVLLRAKKI 173
+ D + + +SE L P + R ++ A D+LL + I
Sbjct: 131 TEILQGTDIRVA-AESAKFGISEAKWSL-YPM-GGSAVRLVRQIPYTVA-CDLLLTGRHI 186
Query: 174 KGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAG 207
EA MGLV + + +A + +A+ +A
Sbjct: 187 TAAEAKEMGLVGHVVPDGQALTKA-LEIAEIIAA 219
|
| >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 2e-11
Identities = 44/222 (19%), Positives = 77/222 (34%), Gaps = 45/222 (20%)
Query: 3 TLEKHGDVFVLTLTGSSDVDEHRFGPPA--------IDSILSAIAKAKAEATPGSALITT 54
+ G V ++ L R P + I++A+ ++ T
Sbjct: 8 AARQEGAVGIIEL--------AR--PDVLNALSRQMVAEIVAAVEAFDRNEKVR-VIVLT 56
Query: 55 SHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAA 114
G+ F+ G D+ + + + P +AAVNG A
Sbjct: 57 GRGRAFAAGADIQEMAKDDPIRL-------EWLNQFADWDRLSIVKTPMIAAVNGLALGG 109
Query: 115 GLTLALSHDYVIMRRDKGVLYMSEVDIGLT--------LPDYFAALFRAKVGSATARRDV 166
G LALS D ++ EV++G+ L + +G A +
Sbjct: 110 GFELALSCDLIVA-SSAAEFGFPEVNLGVMPGAGGTQRLT-------KL-IGPKRA-LEW 159
Query: 167 LLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
L ++ +EA ++G+V E + E MRLA +LA +
Sbjct: 160 LWTGARMSAKEAEQLGIVNRVVSPELLMEET-MRLAGRLAEQ 200
|
| >2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 2e-11
Identities = 50/183 (27%), Positives = 73/183 (39%), Gaps = 19/183 (10%)
Query: 31 IDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFR 90
+ S+ S I +I ++ G FS+G DL R E +
Sbjct: 62 LKSLQSDILHDADSNDLK-VIIISAEGPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMM 120
Query: 91 PVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFA 150
+ + P+P +A VNG A AAG L S D + DK V++GL F
Sbjct: 121 HIR----NHPVPVIAMVNGLATAAGCQLVASCDIAVA-SDKSSFATPGVNVGL-----FC 170
Query: 151 -----ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205
AL RA V A ++L + I +EAL GL+ E E MR+A+++
Sbjct: 171 STPGVALARA-VPRKVA-LEMLFTGEPISAQEALLHGLLSKVVPEAELQEET-MRIARKI 227
Query: 206 AGR 208
A
Sbjct: 228 ASL 230
|
| >3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 6e-11
Identities = 45/214 (21%), Positives = 81/214 (37%), Gaps = 27/214 (12%)
Query: 2 CTLEKHGDVFVLTLTGSSDVDEHR------FGPPAIDSILSAIAKAKAEATPGSALITTS 55
E+ G+V V+T+ +R + A+ +A+ + + ++T +
Sbjct: 11 ALAERRGNVMVITI--------NRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGA 62
Query: 56 HGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAG 115
K F G DL A A + + + PT+AAVNG A G
Sbjct: 63 GDKSFCAGADLK-AIARRENLYHPDH-----PEWGFAGYVRHFIDKPTIAAVNGTALGGG 116
Query: 116 LTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFR--AKVGSATARRDVLLRAKKI 173
LAL+ D V+ ++ + EV GL + +FR ++ A +LL + +
Sbjct: 117 TELALASDLVVA-DERAQFGLPEVKRGL-IAA-AGGVFRIAEQLPRKVA-MRLLLTGEPL 172
Query: 174 KGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAG 207
A GL+ ++ + A + LA +
Sbjct: 173 SAAAARDWGLINEVVEAGSVLDAA-LALASAITV 205
|
| >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 8e-11
Identities = 50/221 (22%), Positives = 83/221 (37%), Gaps = 45/221 (20%)
Query: 4 LEKHGDVFVLTLTGSSDVDEHRFGPPA--------IDSILSAIAKAKAEATPGSALITTS 55
+E+ V ++TL +R P A ++ + SA + + G A+I T
Sbjct: 29 VERDQRVGIITL--------NR--PQALNALNSQVMNEVTSAATELDDDPDIG-AIIITG 77
Query: 56 HGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAG 115
K F+ G D+ F + + PT+AAV G+A G
Sbjct: 78 SAKAFAAGADIKEMADLTFADA-------FTADFFATWGKLAAVRTPTIAAVAGYALGGG 130
Query: 116 LTLALSHDYVIMRRDKGVLYMSEVDIGLT--------LPDYFAALFRAKVGSATARRDVL 167
LA+ D +I D E+ +G+ L RA +G A A D++
Sbjct: 131 CELAMMCDVLIA-ADTAKFGQPEIKLGVLPGMGGSQRLT-------RA-IGKAKA-MDLI 180
Query: 168 LRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208
L + + EA R GLV +++ + EA A ++
Sbjct: 181 LTGRTMDAAEAERSGLVSRVVPADDLLTEA-RATATTISQM 220
|
| >3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 2e-10
Identities = 39/221 (17%), Positives = 73/221 (33%), Gaps = 42/221 (19%)
Query: 3 TLEKHGDVFVLTLTGSSDVDEHRFGPPA--------IDSILSAIAKAKAEATPGSALITT 54
+E+ G V +LT+ +R P + +A + + +A++T
Sbjct: 12 LVERDGPVVILTM--------NR--PHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTG 61
Query: 55 SHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAA 114
+ G + G DL+ + + + L P +AAVNG
Sbjct: 62 A-GSAYCVGGDLSDGWMVRDGSAPPLDPATIGKGLL----LSHTLTKPLIAAVNGACLGG 116
Query: 115 GLTLALSHDYVIMRRDKGVLYMSEVDIGLT--------LPDYFAALFRAKVGSATARRDV 166
G + D + + + EV GL L R + A ++
Sbjct: 117 GCEMLQQTDIRVS-DEHATFGLPEVQRGLVPGAGSMVRLK-------RQ-IPYTKA-MEM 166
Query: 167 LLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAG 207
+L + + EA GLV + + +A LA ++
Sbjct: 167 ILTGEPLTAFEAYHFGLVGHVVPAGTALDKA-RSLADRIVR 206
|
| >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 2e-10
Identities = 46/186 (24%), Positives = 74/186 (39%), Gaps = 27/186 (14%)
Query: 31 IDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFR 90
+L A A+ G A++ T + F+ G D+A +
Sbjct: 39 EAEVLDAARDFDADLEIG-AIVVTGSERAFAAGADIAEMVTLTPHQARER-------NLL 90
Query: 91 PVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLT------ 144
++ + P VAAV G+A G LA+ D VI D E+ +G+
Sbjct: 91 SGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIA-ADTARFGQPEITLGILPGLGGT 149
Query: 145 --LPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLA 202
L RA VG A A D+ L + + EEA R+GLV + + + EA + +A
Sbjct: 150 QRLT-------RA-VGKAKA-MDLCLTGRSLTAEEAERVGLVSRIVPAADLLDEA-LAVA 199
Query: 203 KQLAGR 208
+++A
Sbjct: 200 QRIARM 205
|
| >3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256 | Back alignment and structure |
|---|
Score = 57.1 bits (139), Expect = 4e-10
Identities = 45/214 (21%), Positives = 78/214 (36%), Gaps = 33/214 (15%)
Query: 2 CTLEKHGDVFVLTLTGSSDVDEHR------FGPPAIDSILSAIAKAKAEATPGSALITTS 55
+E+ V ++T+ +R + +A + + A A+IT +
Sbjct: 9 VLIEQRDRVLLITI--------NRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGA 60
Query: 56 HGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAG 115
G F G DL + + V S R + + P +AAV G A A G
Sbjct: 61 -GGNFCAGMDLKAFVSGEA-----------VLSERGLGFTNVPPRKPIIAAVEGFALAGG 108
Query: 116 LTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFR--AKVGSATARRDVLLRAKKI 173
L LS D V+ + EV GL + L R ++ A ++ L +
Sbjct: 109 TELVLSCDLVVA-GRSAKFGIPEVKRGL-VAG-AGGLLRLPNRIPYQVA-MELALTGESF 164
Query: 174 KGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAG 207
E+A + G + D + + A + LA ++
Sbjct: 165 TAEDAAKYGFINRLVDDGQALDTA-LELAAKITA 197
|
| >1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 5e-10
Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 27/186 (14%)
Query: 31 IDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFR 90
I+ + A+ + + G A++ T K F+ G D+ Q + F
Sbjct: 36 IEELNQALETFEEDPAVG-AIVLTGGEKAFAAGADIKEMQNRTFQDC-------YSGKFL 87
Query: 91 PVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLT------ 144
+ + P +AAVNG+A G LA+ D + +K E+ +G
Sbjct: 88 SHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYA-GEKAQFGQPEILLGTIPGAGGT 146
Query: 145 --LPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLA 202
L RA VG + A +++L +I ++A + GLV + E V EA ++ A
Sbjct: 147 QRLT-------RA-VGKSLA-MEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEA-IQCA 196
Query: 203 KQLAGR 208
+++A
Sbjct: 197 EKIANN 202
|
| >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 8e-10
Identities = 34/169 (20%), Positives = 53/169 (31%), Gaps = 29/169 (17%)
Query: 57 GKFFSNGFDLA-----------WAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVA 105
+ FS G +L + + + RP + P VA
Sbjct: 230 KRVFSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVA 289
Query: 106 AVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLT-------LPDYFAALFRAKVG 158
AV+G A G L L D V+ + G+ L R G
Sbjct: 290 AVDGFAIGGGAQLLLVFDRVLA-SSDAYFSLPAAKEGIIPGAANLRLG-------RF-AG 340
Query: 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAG 207
+ R V+L ++I +E LV+ + +E A R +L G
Sbjct: 341 PRVS-RQVILEGRRIWAKEPEARLLVDEVVEPDELDAAI-ERSLTRLDG 387
|
| >3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 1e-09
Identities = 45/214 (21%), Positives = 80/214 (37%), Gaps = 32/214 (14%)
Query: 2 CTLEKHGDVFVLTLTGSSDVDEHR------FGPPAIDSILSAIAKAKAEATPGSALITTS 55
+E+ + ++T+ +R ++ A+ + A+A ++T +
Sbjct: 17 VLVEQRDRILIITI--------NRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGA 68
Query: 56 HGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAG 115
G F G DL A A G R E P +AAV G+A A G
Sbjct: 69 -GGSFCAGMDLK-AFARGENVVVEGRGLGFTER---------PPAKPLIAAVEGYALAGG 117
Query: 116 LTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFR--AKVGSATARRDVLLRAKKI 173
LAL+ D ++ + EV GL + L R ++ A A ++ L +
Sbjct: 118 TELALATDLIVA-ARDSAFGIPEVKRGL-VAG-GGGLLRLPERIPYAIA-MELALTGDNL 173
Query: 174 KGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAG 207
E A +G+V + + A + LA+++
Sbjct: 174 SAERAHALGMVNVLAEPGAALDAA-IALAEKITA 206
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 243 | |||
| 3hrx_A | 254 | Probable enoyl-COA hydratase; the spiral fold, the | 100.0 | |
| 4fzw_C | 274 | 1,2-epoxyphenylacetyl-COA isomerase; structural ge | 100.0 | |
| 4fzw_A | 258 | 2,3-dehydroadipyl-COA hydratase; structural genomi | 100.0 | |
| 2a7k_A | 250 | CARB; crotonase, antibiotic, beta-lactam, biosynth | 100.0 | |
| 3i47_A | 268 | Enoyl COA hydratase/isomerase (crotonase); structu | 100.0 | |
| 3r6h_A | 233 | Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m | 100.0 | |
| 3gow_A | 254 | PAAG, probable enoyl-COA hydratase; the spiral fol | 100.0 | |
| 3pea_A | 261 | Enoyl-COA hydratase/isomerase family protein; stru | 100.0 | |
| 3ot6_A | 232 | Enoyl-COA hydratase/isomerase family protein; stru | 100.0 | |
| 3lke_A | 263 | Enoyl-COA hydratase; nysgrc, target 112 structural | 100.0 | |
| 4di1_A | 277 | Enoyl-COA hydratase ECHA17; structural genomics, s | 100.0 | |
| 3g64_A | 279 | Putative enoyl-COA hydratase; alpha-beta structure | 100.0 | |
| 3kqf_A | 265 | Enoyl-COA hydratase/isomerase family protein; IDP0 | 100.0 | |
| 3myb_A | 286 | Enoyl-COA hydratase; ssgcid, struct genomics, seat | 100.0 | |
| 3l3s_A | 263 | Enoyl-COA hydratase/isomerase family protein; crot | 100.0 | |
| 3sll_A | 290 | Probable enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3qmj_A | 256 | Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, | 100.0 | |
| 2ej5_A | 257 | Enoyl-COA hydratase subunit II; structural genomic | 100.0 | |
| 3rrv_A | 276 | Enoyl-COA hydratase/isomerase; structural genomics | 100.0 | |
| 1uiy_A | 253 | Enoyl-COA hydratase; lyase, beta-oxidation, croton | 100.0 | |
| 3p5m_A | 255 | Enoyl-COA hydratase/isomerase; seattle structural | 100.0 | |
| 3hin_A | 275 | Putative 3-hydroxybutyryl-COA dehydratase; structu | 100.0 | |
| 1nzy_A | 269 | Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen | 100.0 | |
| 2vx2_A | 287 | Enoyl-COA hydratase domain-containing protein 3; i | 100.0 | |
| 3moy_A | 263 | Probable enoyl-COA hydratase; ssgcid, seattle stru | 100.0 | |
| 3h81_A | 278 | Enoyl-COA hydratase ECHA8; niaid, decode, infectio | 100.0 | |
| 2pbp_A | 258 | Enoyl-COA hydratase subunit I; B-oxidation, struct | 100.0 | |
| 2j5i_A | 276 | P-hydroxycinnamoyl COA hydratase/lyase; vanillin, | 100.0 | |
| 2ppy_A | 265 | Enoyl-COA hydratase; beta-oxidation, fatty acid me | 100.0 | |
| 2gtr_A | 261 | CDY-like, chromodomain Y-like protein; structural | 100.0 | |
| 3fdu_A | 266 | Putative enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3pe8_A | 256 | Enoyl-COA hydratase; emerald biostructures, struct | 100.0 | |
| 3qk8_A | 272 | Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB | 100.0 | |
| 2f6q_A | 280 | Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis | 100.0 | |
| 2fbm_A | 291 | Y chromosome chromodomain protein 1, telomeric IS; | 100.0 | |
| 3gkb_A | 287 | Putative enoyl-COA hydratase; structural genomics, | 100.0 | |
| 3lao_A | 258 | Enoyl-COA hydratase/isomerase; alpha-beta sandwich | 100.0 | |
| 1sg4_A | 260 | 3,2-trans-enoyl-COA isomerase, mitochondrial; crot | 100.0 | |
| 1pjh_A | 280 | Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral | 100.0 | |
| 4eml_A | 275 | Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe | 100.0 | |
| 1wz8_A | 264 | Enoyl-COA hydratase; lyase, crotonase, hexamer, st | 100.0 | |
| 1dci_A | 275 | Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg | 100.0 | |
| 3t3w_A | 279 | Enoyl-COA hydratase; ssgcid, structural genomics, | 100.0 | |
| 3oc7_A | 267 | Enoyl-COA hydratase; seattle structural genomics c | 100.0 | |
| 3rsi_A | 265 | Putative enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3qre_A | 298 | Enoyl-COA hydratase, ECHA12_1; structural genomics | 100.0 | |
| 1szo_A | 257 | 6-oxocamphor hydrolase; enzyme-product complex; HE | 100.0 | |
| 3swx_A | 265 | Probable enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3t89_A | 289 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 100.0 | |
| 3r9q_A | 262 | Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome | 100.0 | |
| 2q35_A | 243 | CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} | 100.0 | |
| 3hp0_A | 267 | Putative polyketide biosynthesis enoyl-COA hydrata | 100.0 | |
| 2j5g_A | 263 | ALR4455 protein; enzyme evolution, C-C bond hydrol | 100.0 | |
| 3njd_A | 333 | Enoyl-COA hydratase; ssgcid, mycobacerium smegmati | 100.0 | |
| 4f47_A | 278 | Enoyl-COA hydratase ECHA19; ssgcid, seattle struct | 100.0 | |
| 3isa_A | 254 | Putative enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3tlf_A | 274 | Enoyl-COA hydratase/isomerase; structural genomics | 100.0 | |
| 3qxz_A | 265 | Enoyl-COA hydratase/isomerase; structural genomics | 100.0 | |
| 1mj3_A | 260 | Enoyl-COA hydratase, mitochondrial; homohexamer, l | 100.0 | |
| 4hdt_A | 353 | 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti | 100.0 | |
| 1ef8_A | 261 | Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc | 100.0 | |
| 3t8b_A | 334 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 100.0 | |
| 2uzf_A | 273 | Naphthoate synthase; lyase, menaquinone biosynthes | 100.0 | |
| 3h0u_A | 289 | Putative enoyl-COA hydratase; structural genomics, | 100.0 | |
| 3trr_A | 256 | Probable enoyl-COA hydratase/isomerase; ssgcid, st | 100.0 | |
| 3qxi_A | 265 | Enoyl-COA hydratase ECHA1; structural genomics, se | 100.0 | |
| 3r9t_A | 267 | ECHA1_1; ssgcid, seattle structural genomics cente | 100.0 | |
| 3he2_A | 264 | Enoyl-COA hydratase ECHA6; fatty acid metabolism, | 100.0 | |
| 3m6n_A | 305 | RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X | 100.0 | |
| 1hzd_A | 272 | AUH, AU-binding protein/enoyl-COA hydratase; RNA-b | 100.0 | |
| 3bpt_A | 363 | 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet | 100.0 | |
| 2np9_A | 440 | DPGC; protein inhibitor complex, oxidoreductase; H | 100.0 | |
| 3ju1_A | 407 | Enoyl-COA hydratase/isomerase family protein; alph | 100.0 | |
| 2w3p_A | 556 | Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri | 100.0 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 100.0 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 100.0 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 100.0 | |
| 3bf0_A | 593 | Protease 4; bacterial, hydrolase, inner membrane, | 99.88 | |
| 3viv_A | 230 | 441AA long hypothetical NFED protein; protein-pept | 99.87 | |
| 3rst_A | 240 | Signal peptide peptidase SPPA; alpha/beta protein | 99.86 | |
| 1y7o_A | 218 | ATP-dependent CLP protease proteolytic subunit; hy | 99.69 | |
| 2f9y_B | 304 | Acetyl-coenzyme A carboxylase carboxyl transferas | 99.69 | |
| 2f9i_A | 327 | Acetyl-coenzyme A carboxylase carboxyl transferase | 99.64 | |
| 2f9y_A | 339 | Acetyl-COA carboxylase, carboxyltransferase alpha; | 99.59 | |
| 2cby_A | 208 | ATP-dependent CLP protease proteolytic subunit 1; | 99.38 | |
| 1yg6_A | 193 | ATP-dependent CLP protease proteolytic subunit; en | 99.0 | |
| 3qwd_A | 203 | ATP-dependent CLP protease proteolytic subunit; ca | 98.99 | |
| 2f6i_A | 215 | ATP-dependent CLP protease, putative; structural g | 98.98 | |
| 3p2l_A | 201 | ATP-dependent CLP protease proteolytic subunit; st | 98.97 | |
| 1tg6_A | 277 | Putative ATP-dependent CLP protease proteolytic S; | 98.94 | |
| 2w3p_A | 556 | Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri | 98.57 | |
| 4gm2_A | 205 | ATP-dependent CLP protease proteolytic subunit; st | 98.46 | |
| 3bf0_A | 593 | Protease 4; bacterial, hydrolase, inner membrane, | 98.44 | |
| 3iav_A | 530 | Propionyl-COA carboxylase complex B subunit; accas | 98.35 | |
| 3n6r_B | 531 | Propionyl-COA carboxylase, beta subunit; protein c | 98.3 | |
| 1pix_A | 587 | Glutaconyl-COA decarboxylase A subunit; biotin-dep | 98.27 | |
| 2f9i_B | 285 | Acetyl-coenzyme A carboxylase carboxyl transferase | 98.18 | |
| 1on3_A | 523 | Methylmalonyl-COA carboxyltransferase 12S subunit; | 98.1 | |
| 1x0u_A | 522 | Hypothetical methylmalonyl-COA decarboxylase ALPH; | 98.08 | |
| 3u9r_B | 555 | MCC beta, methylcrotonyl-COA carboxylase, beta-sub | 98.06 | |
| 2bzr_A | 548 | Propionyl-COA carboxylase beta chain 5; fatty acid | 98.0 | |
| 1vrg_A | 527 | Propionyl-COA carboxylase, beta subunit; TM0716, s | 97.95 | |
| 1vrg_A | 527 | Propionyl-COA carboxylase, beta subunit; TM0716, s | 97.73 | |
| 1x0u_A | 522 | Hypothetical methylmalonyl-COA decarboxylase ALPH; | 97.7 | |
| 1on3_A | 523 | Methylmalonyl-COA carboxyltransferase 12S subunit; | 97.59 | |
| 1pix_A | 587 | Glutaconyl-COA decarboxylase A subunit; biotin-dep | 97.47 | |
| 2bzr_A | 548 | Propionyl-COA carboxylase beta chain 5; fatty acid | 97.43 | |
| 3iav_A | 530 | Propionyl-COA carboxylase complex B subunit; accas | 97.28 | |
| 3n6r_B | 531 | Propionyl-COA carboxylase, beta subunit; protein c | 97.14 | |
| 3gf3_A | 588 | Glutaconyl-COA decarboxylase subunit A; sodium ION | 97.07 | |
| 3u9r_B | 555 | MCC beta, methylcrotonyl-COA carboxylase, beta-sub | 96.82 | |
| 3gf3_A | 588 | Glutaconyl-COA decarboxylase subunit A; sodium ION | 96.29 | |
| 3k8x_A | 758 | Acetyl-COA carboxylase; transferase, carboxyltrans | 96.28 | |
| 2x24_A | 793 | Acetyl-COA carboxylase; fatty acid biosynthesis, l | 96.1 | |
| 2x24_A | 793 | Acetyl-COA carboxylase; fatty acid biosynthesis, l | 95.21 | |
| 3k8x_A | 758 | Acetyl-COA carboxylase; transferase, carboxyltrans | 92.93 |
| >3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-54 Score=363.61 Aligned_cols=212 Identities=31% Similarity=0.402 Sum_probs=195.2
Q ss_pred CceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
||.++++|+|++||||||+ +.|++|.+|+.+|.++++++++|++|| +||+||.|+.||+|.|++++.....
T Consensus 1 lvl~E~~dgVa~itlnrP~--~~NAl~~~m~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~------ 71 (254)
T 3hrx_A 1 MVLKERQDGVLVLTLNRPE--KLNAITGELLDALYAALKEGEEDREVR-ALLLTGAGRAFSAGQDLTEFGDRKP------ 71 (254)
T ss_dssp CEEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCSBCCBCGGGTTTSCC------
T ss_pred CeEEEEECCEEEEEEcCCC--cCCCCCHHHHHHHHHHHHHHHhCCCeE-EEEEeCCCCCcccCccHHHhcccch------
Confidence 6889999999999999998 899999999999999999999999999 9999999999999999998765321
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+.+.+++++.+|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+ +|++| +++|++++|
T Consensus 72 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~lGl-~p~~g~~~~L~r~vG- 148 (254)
T 3hrx_A 72 DYEAHLRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVG-ASFTTAFVRIGL-VPDSGLSFLLPRLVG- 148 (254)
T ss_dssp CHHHHTHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTCSEEEEETT-CEEECCGGGGTC-CCCTTHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHHHHHhCCCCEEEEECCEeeehhhhhhhccceeeEcCC-CEEEchhhCcCc-CCcccHHHHHHHHhC-
Confidence 22345566788999999999999999999999999999999999999998 899999999999 78776 579999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
..+++++++||++|+|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++....
T Consensus 149 ~~~A~~llltg~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~~~ 213 (254)
T 3hrx_A 149 LAKAQELLLLSPRLSAEEALALGLVHRVVPA-EKLMEEALSLAKELAQGP--TRAYALTKKLLLETYR 213 (254)
T ss_dssp HHHHHHHHHHCCCEEHHHHHHHTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHGGG
T ss_pred cchHHHHhhcCcccCHHHHHHCCCeEEecCc-HHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999998 899999999999999998 9999999998876543
|
| >4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-54 Score=363.42 Aligned_cols=216 Identities=25% Similarity=0.326 Sum_probs=192.3
Q ss_pred CceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+|.++++|||++||||||+ +.|++|.+|+.+|.+++++++.|++|| +|||||.|+.||+|.|++++..... ....+
T Consensus 16 ~il~~~~~gVa~itlnRP~--~~NAl~~~m~~~L~~al~~~~~d~~vr-~vVltg~G~~FcaG~Dl~~~~~~~~-~~~~~ 91 (274)
T 4fzw_C 16 FILSHVEKGVMTLTLNRPE--RLNSFNDEMHAQLAECLKQVERDDTIR-CLLLTGAGRGFCAGQDLNDRNVDPT-GPAPD 91 (274)
T ss_dssp CEEEEEETTEEEEEECCTT--TTSCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSCSBCCBCCC----------CCC
T ss_pred cEEEEEECCEEEEEEcCcC--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCceeCCcChHhhhcccc-ccchH
Confidence 5788999999999999997 899999999999999999999999999 9999999999999999998754321 11123
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+.+.+++++.+|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++|
T Consensus 92 ~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG- 168 (274)
T 4fzw_C 92 LGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARS-AKFVMAFSKLGL-IPDCGGTWLLPRVAG- 168 (274)
T ss_dssp HHHHHHHTHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETT-CEEECCGGGTTC-CCTTTHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEECCceeecCceeeeccceEEECCC-CEEECcccCccc-CCCccHHHHHHHHhh-
Confidence 34556667788999999999999999999999999999999999999998 899999999999 78776 579999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
..++++++++|++++|+||+++||||+|+|+ +++.+++.++|++++..| +.++..+|+.++...
T Consensus 169 ~~~A~~llltg~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 232 (274)
T 4fzw_C 169 RARAMGLALLGNQLSAEQAHEWGMIWQVVDD-ETLADTAQQLARHLATQP--TFGLGLIKQAINSAE 232 (274)
T ss_dssp HHHHHHHHHHCCCEEHHHHHHTTSSSEEECG-GGHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCcCCHHHHHHCCCceEEeCh-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998 899999999999999998 999999999987653
|
| >4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-53 Score=355.74 Aligned_cols=209 Identities=21% Similarity=0.330 Sum_probs=191.7
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++|+|++||||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|++||+|.|++++... ..
T Consensus 7 l~ve~~~~Va~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~-------~~ 76 (258)
T 4fzw_A 7 LIVSRQQRVLLLTLNRPA--ARNALNNALLMQLVNELEAAATDTSIS-VCVITGNARFFAAGADLNEMAEK-------DL 76 (258)
T ss_dssp EEEEEETTEEEEEEECGG--GTTCBCHHHHHHHHHHHHHHHTCTTCC-EEEEECCSSEEEECBCHHHHHTC-------CH
T ss_pred EEEEEECCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhhCCCeE-EEEEeCCCCceeCCCchhhhccc-------hh
Confidence 568899999999999997 899999999999999999999999999 99999999999999999988652 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+.+....++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus 77 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG-~ 153 (258)
T 4fzw_A 77 AATLNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGEN-ARFGLPEITLGI-MPGAGGTQRLIRSVG-K 153 (258)
T ss_dssp HHHHTCSHHHHHHHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCGGGGTC-CCCSSHHHHHHHHHC-H
T ss_pred hhHHHhHHHHHHHHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCC-CEEECcccCCCc-CCCchHHHHHHHHhC-H
Confidence 2233455678899999999999999999999999999999999999998 899999999999 67765 679999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
.++++++++|+.++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++...
T Consensus 154 ~~A~~llltg~~i~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~ 216 (258)
T 4fzw_A 154 SLASKMVLSGESITAQQAQQAGLVSDVFPS-DLTLEYALQLASKMARHS--PLALQAAKQALRQSQ 216 (258)
T ss_dssp HHHHHHHHHCCCEEHHHHHHHTSCSEEECT-TTHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCcCcHHHHHHCCCeeEEeCc-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998 899999999999999998 999999999997654
|
| >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-51 Score=343.84 Aligned_cols=217 Identities=20% Similarity=0.306 Sum_probs=195.7
Q ss_pred CceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEec-CCCcccCCCChhhHHhcCCCcchH
Q 026127 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTS-HGKFFSNGFDLAWAQAAGSRTGAR 79 (243)
Q Consensus 1 ~~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g-~g~~F~~G~Dl~~~~~~~~~~~~~ 79 (243)
|+.++++++|++|+||||+ +.|++|.+|+++|.+++++++.|+++| +||+|| .|+.||+|.|++++..... .
T Consensus 1 mv~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVltg~~g~~F~aG~Dl~~~~~~~~----~ 73 (250)
T 2a7k_A 1 MVFEENSDEVRVITLDHPN--KHNPFSRTLETSVKDALARANADDSVR-AVVVYGGAERSFSAGGDFNEVKQLSR----S 73 (250)
T ss_dssp CEEEEEETTEEEEEECCSS--TTCBCCHHHHHHHHHHHHHHHHCTTCC-EEEEECCTTSCSBCBSCHHHHHTC-C----H
T ss_pred CeEEEeeCCEEEEEecCCC--ccCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEECCCCCCccCCcCHHHHhhcCc----h
Confidence 6788999999999999997 899999999999999999999999999 999999 9999999999998865211 2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCC
Q 026127 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGS 159 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~ 159 (243)
+....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+.++++++|
T Consensus 74 ~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~l~~~vG- 150 (250)
T 2a7k_A 74 EDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMAST-ANFVMPELKHGI-GCSVGAAILGFTHG- 150 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETT-CEEECCGGGGTC-CCHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCC-CEEeCcccccCC-CCCcHHHHHHHHhH-
Confidence 222344556788899999999999999999999999999999999999988 899999999999 78887449999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHh
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVL 230 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l 230 (243)
..++++++++|+.++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++......+
T Consensus 151 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~~ 218 (250)
T 2a7k_A 151 FSTMQEIIYQCQSLDAPRCVDYRLVNQVVES-SALLDAAITQAHVMASYP--ASAFINTKRAVNKPFIHLL 218 (250)
T ss_dssp HHHHHHHHHHCCCBCHHHHHHHTCCSEEECH-HHHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcccHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhhcCH
Confidence 9999999999999999999999999999997 899999999999999998 8999999999987554433
|
| >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-52 Score=350.68 Aligned_cols=214 Identities=21% Similarity=0.304 Sum_probs=195.7
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|++||+|.|++++..... .. ...
T Consensus 6 v~~~~~~~va~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~-~~~ 80 (268)
T 3i47_A 6 LLYEIQDKVGLLTMNRIS--KHNAFDNQLLTEMRIRLDSAINDTNVR-VIVLKANGKHFSAGADLTWMQSMAN-FT-EEE 80 (268)
T ss_dssp EEEEEETTEEEEEECCTT--TTTCBCHHHHHHHHHHHHHHHHCTTCS-EEEEEECSSCSBCSBCHHHHHHHHT-CC-HHH
T ss_pred EEEEEECCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHHHhCCCeE-EEEEECCCCCeeCCCChhhhhcccc-cc-HHH
Confidence 678899999999999997 889999999999999999999999999 9999999999999999999865321 11 233
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSAT 161 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~ 161 (243)
...+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+.++++++| ..
T Consensus 81 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~l~~~vG-~~ 157 (268)
T 3i47_A 81 NLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTS-ARFCFSEVKLGL-IPAVISPYVVRAIG-ER 157 (268)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCGGGGTC-CCTTTHHHHHHHHC-HH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCC-CEEECcccccCC-CcccHHHHHHHHhC-HH
Confidence 3345566788999999999999999999999999999999999999998 899999999999 79888779999999 99
Q ss_pred HHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
++++++++|++++|+||+++||||+|+|+ +++.+++.++|++|+..| +.++..+|+.++...
T Consensus 158 ~A~~llltg~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 219 (268)
T 3i47_A 158 AAKMLFMSAEVFDATRAYSLNLVQHCVPD-DTLLEFTLKYASQISNNA--PEAVKNSKQLAQYVA 219 (268)
T ss_dssp HHHHHHHHCCEEEHHHHHHTTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCccCHHHHHHcCCCcEeeCh-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhh
Confidence 99999999999999999999999999998 899999999999999998 999999999998653
|
| >3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-51 Score=342.26 Aligned_cols=216 Identities=22% Similarity=0.286 Sum_probs=196.3
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+|||| +.|++|.+|+.+|.++++++++| ++| +||+||.|+.||+|.|++++.... ...
T Consensus 7 v~~~~~~~v~~itlnrp---~~Nal~~~~~~~L~~al~~~~~d-~vr-~vvltg~g~~F~aG~Dl~~~~~~~-----~~~ 76 (233)
T 3r6h_A 7 VTYTHDDAIGVIRMDDG---KVNVLGPTMQQALNEAIDAADRD-NVG-ALVIAGNHRVFSGGFDLKVLTSGE-----AKP 76 (233)
T ss_dssp EEEEEETTEEEEEECCS---SSCCCSHHHHHHHHHHHHHHHHH-TCS-EEEEECCSSEEECCSCHHHHC--------CHH
T ss_pred eEEEEECCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHHhC-CCe-EEEEECCCCCccCCcChHHHhccC-----hHH
Confidence 67889999999999999 78999999999999999999987 689 999999999999999999986521 233
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSAT 161 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~ 161 (243)
...+.+.+++++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+.+|++|++++++++| ..
T Consensus 77 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl~~~~~g~~~l~~~~g-~~ 154 (233)
T 3r6h_A 77 AIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHA-YNVQANEVAIGMTIPYAAMEVLKLRLT-PS 154 (233)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTT-CCEECCGGGGTCCCCHHHHHHHHHHSC-HH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCC-cEEECchhhhCCCCCccHHHHHHHHhC-HH
Confidence 4556777888999999999999999999999999999999999999998 899999999999546666789999999 99
Q ss_pred HHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhcc
Q 026127 162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLGL 232 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~~ 232 (243)
++++++++|++++|+||+++||||+|+|+ +++.+++.++|++++..| +.+++.+|+.++......++.
T Consensus 155 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~~ 222 (233)
T 3r6h_A 155 AYQQAAGLAKTFFGETALAAGFIDEISLP-EVVLSRAEEAAREFAGLN--QQAHNATKLRARAEALKAIRA 222 (233)
T ss_dssp HHHHHHHSCCEECHHHHHHHTSCSEECCG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHcCCcCCHHHHHHcCCCcEeeCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999998 899999999999999998 999999999999887766663
|
| >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-51 Score=346.93 Aligned_cols=212 Identities=20% Similarity=0.348 Sum_probs=193.6
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ + |++|.+|+.+|.+++++++.|+++| +||+||.|++||+|.|++++..... ...
T Consensus 8 v~~~~~~~v~~itlnrp~--~-Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~----~~~ 79 (261)
T 3pea_A 8 LSVRVEDHIAVATLNHAP--A-NAMSSQVMHDVTELIDQVEKDDNIR-VVVIHGEGRFFSAGADIKEFTSVTE----AKQ 79 (261)
T ss_dssp EEEEEETTEEEEEECCTT--T-TCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCSBCCBCGGGSSTTCC----HHH
T ss_pred eEEEEECCEEEEEECCCC--C-CCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCceeCCcCHHHHhhcCc----hhH
Confidence 678899999999999996 7 9999999999999999999999999 9999999999999999998865321 233
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+....+.++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG-~ 156 (261)
T 3pea_A 80 ATELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATES-AKLGLPELTLGL-IPGFAGTQRLPRYVG-K 156 (261)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCGGGGTC-CCCSSHHHHHHHHHC-H
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC-CEEECcccccCc-CCCccHHHHHHHHhC-H
Confidence 4455566678899999999999999999999999999999999999998 899999999999 78776 579999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
.++++++++|+.++|+||+++||||+|+|+ +++.+++.++|++++..| +.+++.+|+.++....
T Consensus 157 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~ 220 (261)
T 3pea_A 157 AKACEMMLTSTPITGAEALKWGLVNGVFAE-ETFLDDTLKVAKQIAGKS--PATARAVLELLQTTKS 220 (261)
T ss_dssp HHHHHHHHHCCCEEHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCccEecCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999998 899999999999999998 9999999999976543
|
| >3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-51 Score=339.64 Aligned_cols=214 Identities=23% Similarity=0.306 Sum_probs=194.9
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|||||| +.|++|.+|+.+|.+++++++.| ++ +||+||.|++||+|.|++++... ...
T Consensus 8 v~~~~~~~v~~itlnrp---~~Nal~~~~~~~L~~al~~~~~d--~~-~vvltg~g~~F~aG~Dl~~~~~~------~~~ 75 (232)
T 3ot6_A 8 VSYHLDDGVATLTLNNG---KVNAISPDVIIAFNAALDQAEKD--RA-IVIVTGQPGILSGGYDLKVMTSS------AEA 75 (232)
T ss_dssp EEEEEETTEEEEEECCT---TTTCBCHHHHHHHHHHHHHHHHT--TC-EEEEECBTEEEECCBCHHHHHHC------HHH
T ss_pred eEEEEECCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHhcC--CC-EEEEECCCCCccCCcCHHHHhhC------hHH
Confidence 57889999999999999 77999999999999999999976 48 99999999999999999998751 233
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSAT 161 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~ 161 (243)
...+...+++++.++.++||||||+|||+|+|||++|+++||+||+++++++|++||+++|+.+|++|++++++++| ..
T Consensus 76 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~~~ig-~~ 154 (232)
T 3ot6_A 76 AINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLR-KS 154 (232)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSC-HH
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHHHHhC-HH
Confidence 45667778899999999999999999999999999999999999999864689999999999546667789999999 99
Q ss_pred HHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhc
Q 026127 162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLG 231 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~ 231 (243)
++++++++|++++|+||+++||||+|+|+ +++.+++.++|++++..| +.+++.+|+.++......++
T Consensus 155 ~a~~l~ltg~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~ 221 (232)
T 3ot6_A 155 AFNRSVINAEMFDPEGAMAAGFLDKVVSV-EELQGAALAVAAQLKKIN--MNAHKKTKLKVRKGLLDTLD 221 (232)
T ss_dssp HHHHHHTSCCEECHHHHHHHTSCSEEECT-TTHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCccCHHHHHHCCCCCEecCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhHhHHH
Confidence 99999999999999999999999999998 899999999999999998 99999999999887766655
|
| >3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-51 Score=345.84 Aligned_cols=221 Identities=23% Similarity=0.277 Sum_probs=198.5
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcc-cCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFF-SNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F-~~G~Dl~~~~~~~~~~~~~~ 80 (243)
|.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|+.| |+|.|++++..... .....
T Consensus 6 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~FF~aG~Dl~~~~~~~~-~~~~~ 81 (263)
T 3lke_A 6 VHTEIQNDALYITLDYPE--KKNGLDAELGTSLLEAIRAGNNETSIH-SIILQSKHRAYFSSGPRLEDLLICAS-DQSDV 81 (263)
T ss_dssp EEEEECSSEEEEEECCGG--GTTBCCHHHHHHHHHHHHHHHHCSSCC-EEEEEESCTTEEECBSCHHHHHHHHH-CSSSH
T ss_pred EEEEEECCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHhcCCCeE-EEEEEcCCCceEecCcCHHHHHhhcc-cCCHH
Confidence 678899999999999997 899999999999999999999999999 99999999999 99999999865100 01123
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+.+.+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++|
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~~~vG- 158 (263)
T 3lke_A 82 RLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRR-AKFLENFHKMGI-SPDLGASYFLPRIIG- 158 (263)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETT-CEEECCHHHHTC-CCCTTHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCC-CEEeCchHhhCC-CCCccHHHHHHHHhC-
Confidence 44556777889999999999999999999999999999999999999998 899999999999 78876 579999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhc
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLG 231 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~ 231 (243)
..++++++++|++++|+||+++||||+|+|+.+++.+++.++|++++..| +.+++.+|+.++......++
T Consensus 159 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~ 228 (263)
T 3lke_A 159 YEQTMNLLLEGKLFTSEEALRLGLIQEICENKQELQERVKNYLKAVSEGY--VPAIAATKKLLKGKAAEELK 228 (263)
T ss_dssp HHHHHHHHHHCCCEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHTSC--HHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHhCCCcCHHHHHHcCCCcEecCChhHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhhcCHH
Confidence 99999999999999999999999999999944899999999999999998 99999999999876555444
|
| >4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-51 Score=346.93 Aligned_cols=210 Identities=20% Similarity=0.281 Sum_probs=195.0
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++|+||||+ + |++|.+|+.+|.+++++++.|+++| +||+||.|++||+|.|++++... . ...
T Consensus 26 v~~~~~~~Va~ItlnrP~--~-Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~-~----~~~ 96 (277)
T 4di1_A 26 VSVVADQGLATLVVSRPP--T-NAMTRQVYREIVAAADELGRRDDIG-AVVLFGGHEIFSAGDDMPELRTL-N----APE 96 (277)
T ss_dssp EEEEEETTEEEEEECCTT--T-TCBCHHHHHHHHHHHHHHHHCTTCC-EEEEECCSSCSBCCBCHHHHHTC-C----HHH
T ss_pred EEEEEECCEEEEEECCCC--C-CCCCHHHHHHHHHHHHHHHhCCCcE-EEEEECCCCCEecCcCccccccc-C----hHH
Confidence 678899999999999997 7 9999999999999999999999999 99999999999999999998753 1 344
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+...+++++.+|.++||||||+|||+|+|+|++|+++||+|||+++ ++|++||+++|+ +|++| +++|++++| .
T Consensus 97 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~lGl-~p~~g~~~~L~r~vG-~ 173 (277)
T 4di1_A 97 ADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDN-VKFGATEILAGL-IPGGGGMGRLTRVVG-S 173 (277)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECGGGGGTC-CCCTTHHHHHHHHHC-H
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCC-CEEECcccccCC-CCCchHHHHHHHHhC-H
Confidence 5566777889999999999999999999999999999999999999998 899999999999 78876 679999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
.++++++++|+.++|+||+++||||+|+|+ +++.+++.++|++++..| +.++..+|+.++...
T Consensus 174 ~~A~~llltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 236 (277)
T 4di1_A 174 SRAKELVFSGRFFDAEEALALGLIDDMVAP-DDVYDSAVAWARRYLECP--PRALAAAKAVINDVF 236 (277)
T ss_dssp HHHHHHHHHCCCEEHHHHHHHTSCSEEECG-GGHHHHHHHHHHTTTTSC--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCccEEeCh-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhh
Confidence 999999999999999999999999999998 899999999999999998 999999999998654
|
| >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-51 Score=347.96 Aligned_cols=215 Identities=25% Similarity=0.285 Sum_probs=195.4
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.++++++++|+++| +||+||.|++||+|.|++++..... ......
T Consensus 19 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~~ 94 (279)
T 3g64_A 19 LRVEITDGVATVTLARPD--KLNALTFEAYADLRDLLAELSRRRAVR-ALVLAGEGRGFCSGGDVDEIIGATL-SMDTAR 94 (279)
T ss_dssp EEEEEETTEEEEEESCGG--GTTCBCHHHHHHHHHHHHHHHHTTCCS-EEEEEECSSCSBCCBCTTTTHHHHT-TCCHHH
T ss_pred EEEEEECCEEEEEECCCc--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCceecCcCHHHHhhccc-cchhhH
Confidence 678899999999999997 789999999999999999999999999 9999999999999999998865322 111233
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCC-Chhh-HHHHHHHhCC
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTL-PDYF-AALFRAKVGS 159 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~-p~~g-~~~l~~~~g~ 159 (243)
...+.+.+++++.+|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+ + |++| +++|++++|
T Consensus 95 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~~p~~g~~~~l~r~vG- 171 (279)
T 3g64_A 95 LLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPS-TRFAFLFTRVGL-SGGDMGAAYLLPRVVG- 171 (279)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEECTT-CEEECCGGGGTC-CSCCTTHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCeeccccHHHHHhCCEEEEeCC-CEEeCchhhcCC-CCCchhHHHHHHHHhC-
Confidence 4456667788999999999999999999999999999999999999988 899999999999 6 8776 579999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
..++++++++|+.++|+||+++||||+|+|+ +++.+++.++|++|+..| +.+++.+|+.++...
T Consensus 172 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 235 (279)
T 3g64_A 172 LGHATRLLMLGDTVRAPEAERIGLISELTEE-GRADEAARTLARRLADGP--ALAHAQTKALLTAEL 235 (279)
T ss_dssp HHHHHHHHHHCCCEEHHHHHHHTCCSEECCT-TCHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcCHHHHHHCCCCCEecCc-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999998 889999999999999998 999999999987653
|
| >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-51 Score=344.86 Aligned_cols=211 Identities=20% Similarity=0.349 Sum_probs=194.9
Q ss_pred ceee-EeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchH
Q 026127 2 CTLE-KHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGAR 79 (243)
Q Consensus 2 ~~~~-~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~ 79 (243)
+.++ ++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.| +.||+|.|++++... . .
T Consensus 10 v~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~~F~aG~Dl~~~~~~-~----~ 81 (265)
T 3kqf_A 10 ISVDYATPHVVKISLNRER--QANSLSLALLEELQNILTQINEEANTR-VVILTGAGEKAFCAGADLKERAGM-N----E 81 (265)
T ss_dssp EEEECCSTTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHTCTTCC-EEEEEESSSSEEECCBCHHHHTTC-C----H
T ss_pred EEEEEeeCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEecCCCCeeeeCcChHHHhcc-C----H
Confidence 5677 78999999999997 789999999999999999999999999 99999999 999999999998652 1 3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhC
Q 026127 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVG 158 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g 158 (243)
.....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++|
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG 159 (265)
T 3kqf_A 82 EQVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAES-ASLGLTETTLAI-IPGAGGTQRLPRLIG 159 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCGGGGTC-CCCSSHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC-cEEECcccccCc-CCCccHHHHHHHHhC
Confidence 445566777889999999999999999999999999999999999999998 899999999999 78776 579999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
..++++++++|++++|+||+++||||+|+|+ +++.+++.++|++++..| +.+++.+|+.++...
T Consensus 160 -~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~ 223 (265)
T 3kqf_A 160 -VGRAKELIYTGRRISAQEAKEYGLVEFVVPV-HLLEEKAIEIAEKIASNG--PIAVRLAKEAISNGI 223 (265)
T ss_dssp -HHHHHHHHHHCCCEEHHHHHHHTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHcCCCCCHHHHHHCCCccEEeCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999997 899999999999999998 999999999997653
|
| >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-51 Score=346.66 Aligned_cols=212 Identities=21% Similarity=0.311 Sum_probs=196.7
Q ss_pred ceeeEe--CcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchH
Q 026127 2 CTLEKH--GDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGAR 79 (243)
Q Consensus 2 ~~~~~~--~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~ 79 (243)
|.++++ ++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +|||||.|+.||+|.|++++... ...
T Consensus 26 v~~~~~~~~~va~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~G~~F~aG~Dl~~~~~~----~~~ 98 (286)
T 3myb_A 26 LLLQDRDERGVVTLTLNRPQ--AFNALSEAMLAALGEAFGTLAEDESVR-AVVLAASGKAFCAGHDLKEMRAE----PSR 98 (286)
T ss_dssp SEEEEECTTSEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHTCTTCC-EEEEEECSSCSBCCBCHHHHHSS----CCH
T ss_pred EEEEEecCCCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHHhCCCeE-EEEEECCCCCccCCcChhhhhcc----ccH
Confidence 578888 999999999997 789999999999999999999999999 99999999999999999998752 114
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCC
Q 026127 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGS 159 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~ 159 (243)
.....+.+.+++++.+|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++++++|++++|
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~lGl-~~~g~~~~L~r~vG- 175 (286)
T 3myb_A 99 EYYEKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRD-ARFAVSGINVGL-FCSTPGVALSRNVG- 175 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCEEEEECSCEETHHHHHHHHSSEEEEETT-CEEECGGGGGTC-CCHHHHHHHTTTSC-
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEECCeehHHHHHHHHhCCEEEEcCC-CEEECcccccCC-CCchHHHHHHHHcC-
Confidence 455667788899999999999999999999999999999999999999998 899999999999 57777889999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
..++++++++|+.++|+||+++||||+|+|+ +++.+++.++|++++..| +.++..+|+.++...
T Consensus 176 ~~~A~~llltG~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~ 239 (286)
T 3myb_A 176 RKAAFEMLVTGEFVSADDAKGLGLVNRVVAP-KALDDEIEAMVSKIVAKP--RAAVAMGKALFYRQI 239 (286)
T ss_dssp HHHHHHHHHHCCCEEHHHHHHHTSCSEEECG-GGHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHCCCCcEecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998 899999999999999998 999999999987653
|
| >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-51 Score=343.86 Aligned_cols=212 Identities=22% Similarity=0.265 Sum_probs=192.3
Q ss_pred EeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcC-CCcchHHHHHH
Q 026127 6 KHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAG-SRTGARERLHY 84 (243)
Q Consensus 6 ~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~-~~~~~~~~~~~ 84 (243)
.+++|++|+||||+ + |++|.+|+.+|.++++.++.|+++| +||+||.|+.||+|.|++++.... ..+........
T Consensus 13 ~~~~v~~itlnrP~--~-Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 88 (263)
T 3l3s_A 13 LSEGVLTLTLGRAP--A-HPLSRAMIAALHDALRRAMGDDHVH-VLVIHGPGRIFCAGHDLKEIGRHRADPDEGRAFVTD 88 (263)
T ss_dssp ESSSEEEEEECSTT--T-CCCCHHHHHHHHHHHHHHHTCTTCC-EEEEECCSSEEECCSCSCCCCC-----CCSHHHHHH
T ss_pred eeCCEEEEEECCCC--C-CCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCccCCcChHHHhhccccccccHHHHHH
Confidence 48999999999997 7 9999999999999999999999999 999999999999999999875421 00112445566
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHH
Q 026127 85 MVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARR 164 (243)
Q Consensus 85 ~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~ 164 (243)
+.+.+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|+++++++++++| ..+++
T Consensus 89 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~~~g~~~~l~r~vG-~~~A~ 165 (263)
T 3l3s_A 89 LFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPA-ARFCLPGVQNGG-FCTTPAVAVSRVIG-RRAVT 165 (263)
T ss_dssp HHHHHHHHHHHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTT-CEEECCTTTTTS-CCHHHHHHHHTTSC-HHHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCC-CEEeCchhccCC-CCccHHHHHHHHcC-HHHHH
Confidence 7778899999999999999999999999999999999999999998 899999999999 58877889999999 99999
Q ss_pred HHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 165 DVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 165 ~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
+++++|++++|+||+++||||+|+|+ +++.+++.++|++++..| +.+++.+|+.++....
T Consensus 166 ~l~ltg~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~ 225 (263)
T 3l3s_A 166 EMALTGATYDADWALAAGLINRILPE-AALATHVADLAGALAARN--QAPLRRGLETLNRHLE 225 (263)
T ss_dssp HHHHHCCEEEHHHHHHHTSSSEECCH-HHHHHHHHHHHHHHHSSC--HHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCHHHHHHCCCccEEeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhc
Confidence 99999999999999999999999997 899999999999999998 9999999999986543
|
| >3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-50 Score=345.51 Aligned_cols=217 Identities=20% Similarity=0.273 Sum_probs=190.5
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCc--chH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRT--GAR 79 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~--~~~ 79 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +|||+|.|+.||+|.|++++....... .+.
T Consensus 26 v~~~~~~~va~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~ 102 (290)
T 3sll_A 26 LVDRPRPEIALVTLNRPE--RMNAMAFDVMLPFKQMLVDISHDNDVR-AVVITGAGKGFCSGADQKSAGPIPHIGGLTQP 102 (290)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCCCHHHHHHHHHHHHHHHTCTTCC-EEEEEESTTCSBCC------CCCSSCTTCCHH
T ss_pred EEEEEECCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHHHcCCCee-EEEEECCCCCeeCCcChHHHhcccccccccch
Confidence 567889999999999997 899999999999999999999999999 999999999999999999886532211 112
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCCh-hh-HHHHHHHh
Q 026127 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPD-YF-AALFRAKV 157 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~-~g-~~~l~~~~ 157 (243)
.....+.+.+++++.+|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|+ +| +++|++++
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl-~p~~~g~~~~L~r~v 180 (290)
T 3sll_A 103 TIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQD-AYFRAAGINNGL-TASELGLSYLLPRAI 180 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECTTTTTTS-CSCCTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCC-CEEECchhccCc-CCCcccHHHHHHHHh
Confidence 234566777889999999999999999999999999999999999999998 899999999999 787 55 67999999
Q ss_pred CCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
| ..++++++++|+.++|+||+++||||+|+|+ +++.+++.++|++|+..| +.+++.+|+.++....
T Consensus 181 G-~~~A~~llltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~ 246 (290)
T 3sll_A 181 G-TSRASDIMLTGRDVDADEAERIGLVSRKVAS-ESLLEECYAIGERIAGFS--RPGIELTKRTIWSGLD 246 (290)
T ss_dssp C-HHHHHHHHHHCCCEEHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHT
T ss_pred C-HHHHHHHHHcCCCCCHHHHHHCCCccEEeCh-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhcc
Confidence 9 9999999999999999999999999999998 889999999999999998 9999999999986544
|
| >3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-51 Score=346.54 Aligned_cols=217 Identities=24% Similarity=0.301 Sum_probs=187.7
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|++||+|.|++++..... . ..
T Consensus 8 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~---~~ 80 (256)
T 3qmj_A 8 LQIDDDNRVRTLTLNRPE--ALNAFNEALYDATAQALLDAADDPQVA-VVLLTGSGRGFSAGTDLAEMQARIT-D---PN 80 (256)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTEEECCBCHHHHHHHHH-S---SS
T ss_pred EEEEEECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCcccCcCHHHHhhccc-c---hh
Confidence 578899999999999997 789999999999999999999999999 9999999999999999998865211 0 00
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+...+++++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus 81 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG-~ 157 (256)
T 3qmj_A 81 FSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSST-ARLKCPFTSLGV-APEAASSYLLPQLVG-R 157 (256)
T ss_dssp CCCCSSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEEETT-CEEECCGGGC----CCTTHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEeCC-CEEECcccccCC-CCCccHHHHHHHHhC-H
Confidence 0112334577889999999999999999999999999999999999998 899999999999 68776 578999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhc
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLG 231 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~ 231 (243)
.++++++++|++++|+||+++||||+|+|+ +++.+++.++|++++..| +.++..+|+.++......++
T Consensus 158 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~ 225 (256)
T 3qmj_A 158 QNAAWLLMSSEWIDAEEALRMGLVWRICSP-EELLPEARRHAEILAAKP--ISSLMAVKHTMVEPNRAQIA 225 (256)
T ss_dssp HHHHHHHHSCCCEEHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHCC------
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCccEEeCH-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhcCCHH
Confidence 999999999999999999999999999998 899999999999999998 99999999999866544443
|
| >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-50 Score=339.71 Aligned_cols=211 Identities=24% Similarity=0.329 Sum_probs=186.1
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|+.||+|.|++++..... ...
T Consensus 5 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~----~~~ 77 (257)
T 2ej5_A 5 IRYEVKGQVAWLTLNRPD--QLNAFTEQMNAEVTKALKQAGADPNVR-CVVITGAGRAFCAGEDLSGVTEEMD----HGD 77 (257)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSCSBCCBCC-------C----HHH
T ss_pred eEEEeECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHhhCCCeE-EEEEECCCCCccCCcCHHHHhhccc----hhH
Confidence 567889999999999997 899999999999999999999999999 9999999999999999998754211 111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
.... .+++++.+|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+ +|++| +++|++++| .
T Consensus 78 ~~~~--~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-~ 152 (257)
T 2ej5_A 78 VLRS--RYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEK-ASFAPAFIHVGL-VPDAGHLYYLPRLVG-R 152 (257)
T ss_dssp HHHH--THHHHHHHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCGGGGTC-CCCTTHHHHHHHHHC-H
T ss_pred HHHH--HHHHHHHHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCC-CEEeCcccccCC-CCcchHHHHHHHHhC-H
Confidence 1111 3678889999999999999999999999999999999999998 899999999999 78777 569999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
.++++++++|+.|+|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++....
T Consensus 153 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~ 216 (257)
T 2ej5_A 153 AKALELAVLGEKVTAEEAAALGLATKVIPL-SDWEEEVKQFAERLSAMP--TKAIGLIKRLLRESEE 216 (257)
T ss_dssp HHHHHHHHHCCCEEHHHHHHHTCCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccCHHHHHHcCCcceecCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999998 889999999999999998 8999999999976543
|
| >3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-51 Score=344.30 Aligned_cols=216 Identities=18% Similarity=0.244 Sum_probs=195.4
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +|||||.|+.||+|.|++++.... .+...
T Consensus 30 v~~~~~~~v~~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~---~~~~~ 103 (276)
T 3rrv_A 30 IDVRADGALRIITLNRPD--SLNSVNDDLHVGLARLWQRLTDDPTAR-AAVITGAGRAFSAGGDFGYLKELS---ADADL 103 (276)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCSBCCBCHHHHHHHH---HCHHH
T ss_pred EEEEEECCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCcccCCcCHHHHhhcc---cchHH
Confidence 678899999999999996 799999999999999999999999999 999999999999999999886521 11334
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus 104 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG-~ 180 (276)
T 3rrv_A 104 RAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAEN-AYLADPHVQVGL-VAADGGPLTWPLHIS-L 180 (276)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETT-CEEECCHHHHTC-CCCSSHHHHGGGTSC-H
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHHCCEEEEeCC-CEEECchhccCc-CCCccHHHHHHHHhC-H
Confidence 4556677889999999999999999999999999999999999999998 899999999999 67776 568999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhc
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLG 231 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~ 231 (243)
.++++++++|+.++|+||+++||||+|+ +++.+++.++|++++..| +.++..+|+.++......++
T Consensus 181 ~~A~ellltG~~i~A~eA~~~GLv~~vv---~~l~~~a~~~A~~la~~~--~~a~~~~K~~l~~~~~~~l~ 246 (276)
T 3rrv_A 181 LLAKEYALTGTRISAQRAVELGLANHVA---DDPVAEAIACAKKILELP--QQAVESTKRVLNIHLERAVL 246 (276)
T ss_dssp HHHHHHHHHCCCEEHHHHHHHTSCSEEE---SSHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHcCCHHHHH---HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhhcCHH
Confidence 9999999999999999999999999999 469999999999999998 99999999999876554443
|
| >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-50 Score=339.61 Aligned_cols=213 Identities=30% Similarity=0.413 Sum_probs=190.3
Q ss_pred CceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
|+.++ +++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|+.||+|.|++++..... .....
T Consensus 1 ~i~~~-~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~ 75 (253)
T 1uiy_A 1 MVQVE-KGHVAVVFLNDPE--RRNPLSPEMALSLLQALDDLEADPGVR-AVVLTGRGKAFSAGADLAFLERVTE-LGAEE 75 (253)
T ss_dssp CEEEE-CSSEEEEEECCGG--GTCCCCHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSCSBCCCCHHHHHHHTT-SCHHH
T ss_pred CEEEE-eCCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCcccCcChHHHHhccc-CCchh
Confidence 67888 9999999999997 799999999999999999999999999 9999999999999999998765210 01111
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCH
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSA 160 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~ 160 (243)
... ....+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+++|++++| .
T Consensus 76 ~~~-~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~l~r~vG-~ 151 (253)
T 1uiy_A 76 NYR-HSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEE-ARLGYTEVKIGF-VAALVSVILVRAVG-E 151 (253)
T ss_dssp HHH-HHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETT-CEEECCHHHHTC-CCHHHHHHHHHHSC-H
T ss_pred HHH-HHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCC-cEEeCcccccCc-CCchHHHHHHHHhC-H
Confidence 111 1112678889999999999999999999999999999999999988 899999999999 79888669999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
.++++++++|+.++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 152 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 213 (253)
T 1uiy_A 152 KAAKDLLLTGRLVEAREAKALGLVNRIAPP-GKALEEAKALAEEVAKNA--PTSLRLTKELLLAL 213 (253)
T ss_dssp HHHHHHHHHCCEEEHHHHHHHTSCSEEECT-TCHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHG
T ss_pred HHHHHHHHhCCccCHHHHHHCCCcceecCh-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhh
Confidence 999999999999999999999999999998 889999999999999998 89999999998764
|
| >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=340.75 Aligned_cols=205 Identities=22% Similarity=0.364 Sum_probs=188.3
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|+.||+|.|++++.. .
T Consensus 8 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~-------~-- 75 (255)
T 3p5m_A 8 ISVEHDGAVLRIRLDRPE--KLNAVDTPMLEELSVHIRDAEADESVR-AVLLTGAGRAFCSGGDLTGGDT-------A-- 75 (255)
T ss_dssp EEEEEETTEEEEEECCGG--GTTEECHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSCSBCEECC---CH-------H--
T ss_pred EEEEEECCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHHhhCCCeE-EEEEECCCCCccCCCChhhhcc-------h--
Confidence 678899999999999997 789999999999999999999999999 9999999999999999998642 1
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
.+...+++++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus 76 --~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG-~ 150 (255)
T 3p5m_A 76 --GAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPA-SYFQLAFTRVGL-MPDGGASALLPLLIG-R 150 (255)
T ss_dssp --HHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEECTT-CEEECGGGGGTC-CCCTTHHHHTHHHHC-H
T ss_pred --HHHHHHHHHHHHHHhCCCCEEEEeCCeehhhHHHHHHHCCEEEEcCC-cEEeCcccccCc-CCCccHHHHHHHHhC-H
Confidence 34566788999999999999999999999999999999999999988 899999999999 67776 579999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
.++++++++|+.++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++...
T Consensus 151 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 213 (255)
T 3p5m_A 151 ARTSRMAMTAEKISAATAFEWGMISHITSA-DEYESVLTDVLRSVSGGP--TLAFGWTKRALAAAT 213 (255)
T ss_dssp HHHHHHHHHCCCEEHHHHHHTTSCSEECCT-TCHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcCHHHHHHCCCCCEeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998 889999999999999998 999999999997653
|
| >3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-51 Score=344.93 Aligned_cols=210 Identities=14% Similarity=0.198 Sum_probs=191.7
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.++++++ |+++| +||+||.|+.||+|.|++++... . ...
T Consensus 18 v~~~~~~~va~itlnrP~--~~Nal~~~~~~~L~~al~~~--d~~vr-~vVltg~g~~F~aG~Dl~~~~~~----~-~~~ 87 (275)
T 3hin_A 18 LVVDTVGPVLTIGLNRPK--KRNALNDGLMAALKDCLTDI--PDQIR-AVVIHGIGDHFSAGLDLSELRER----D-ATE 87 (275)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHTSSC--CTTCC-EEEEEESSSCSBCCBCGGGCCCC----C-HHH
T ss_pred EEEEEECCEEEEEEcCCC--cCCCCCHHHHHHHHHHHHHh--CcCce-EEEEECCCCCccCCCCHHHHhcc----C-hhh
Confidence 678899999999999997 89999999999999999999 67999 99999999999999999987642 1 233
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus 88 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG-~ 164 (275)
T 3hin_A 88 GLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEAS-AYYALPEGSRGI-FVGGGGSVRLPRLIG-V 164 (275)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECGGGGGTC-CCCSSHHHHHHHHHC-H
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC-CEEECchhccCC-CCCccHHHHHHHHhC-H
Confidence 3455667788999999999999999999999999999999999999998 899999999999 78776 579999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
.++++++++|++++|+||+++||||+|+|+ +++.+++.++|++++..| +.++..+|+.++....
T Consensus 165 ~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~ia~~~--p~a~~~~K~~l~~~~~ 228 (275)
T 3hin_A 165 ARMADMMLTGRVYSAAEGVVHGFSQYLIEN-GSAYDKALELGNRVAQNA--PLTNFAVLQALPMIAE 228 (275)
T ss_dssp HHHHHHHHHCCCEEHHHHHHHTSCSEEESS-SCHHHHHHHHHHHHTTSC--HHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCCCEEeCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999998 899999999999999998 9999999999876543
|
| >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=342.78 Aligned_cols=215 Identities=20% Similarity=0.303 Sum_probs=191.6
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|+.||+|.|++++.......+....
T Consensus 5 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 81 (269)
T 1nzy_A 5 IGHRVEDGVAEITIKLPR--HRNALSVKAMQEVTDALNRAEEDDSVG-AVMITGAEDAFCAGFYLREIPLDKGVAGVRDH 81 (269)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCSBCCBCGGGSCSSSHHHHHHHH
T ss_pred EEEEEECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHhhCCCee-EEEEECCCCCcccCcCHHHHhhcccccChHHH
Confidence 678889999999999997 899999999999999999999999999 99999999999999999987531000001121
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+.+.+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus 82 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-~ 158 (269)
T 1nzy_A 82 FRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADS-AKFVCAWHTIGI-GNDTATSYSLARIVG-M 158 (269)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCHHHHTC-CCCTTHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCC-CEEeCcccccCC-CCCccHHHHHHHHhh-H
Confidence 1344556788899999999999999999999999999999999999988 899999999999 78877 579999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
.++++++++|+.++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 159 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~ 220 (269)
T 1nzy_A 159 RRAMELMLTNRTLYPEEAKDWGLVSRVYPK-DEFREVAWKVARELAAAP--THLQVMAKERFHAG 220 (269)
T ss_dssp HHHHHHHHHCCCBCHHHHHHHTSCSCEECH-HHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCccEeeCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhh
Confidence 999999999999999999999999999997 899999999999999998 89999999998754
|
| >2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-50 Score=344.52 Aligned_cols=211 Identities=20% Similarity=0.301 Sum_probs=190.9
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +|||||.|+.||+|.|++++..... ...
T Consensus 35 v~~~~~~~V~~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~~~----~~~ 107 (287)
T 2vx2_A 35 TSARQLDGIRNIVLSNPK--KRNTLSLAMLKSLQSDILHDADSNDLK-VIIISAEGPVFSSGHDLKELTEEQG----RDY 107 (287)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCCCHHHHHHHHHHHHTTTTCTTCC-EEEEEESSSEEECCSCCC-CCGGGC----HHH
T ss_pred eEEEEECCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhCCCeE-EEEEECCCCCccCCcCHHHHhcccc----hhH
Confidence 567889999999999997 789999999999999999999999999 9999999999999999988754211 233
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSAT 161 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~ 161 (243)
...+...+++++.+|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+..|++++| ..
T Consensus 108 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~lGl-~p~~g~~~L~r~vG-~~ 184 (287)
T 2vx2_A 108 HAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDK-SSFATPGVNVGL-FCSTPGVALARAVP-RK 184 (287)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCGGGGTC-CCHHHHHHHHTTSC-HH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCC-CEEECchhhhCC-CCchHHHHHHHHhh-HH
Confidence 3445566788999999999999999999999999999999999999988 899999999999 78887544999999 99
Q ss_pred HHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
++++++++|+.++|+||+++||||+|+|+ +++.+++.++|++|+..| +.++..+|+.++..
T Consensus 185 ~A~~llltg~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~ 245 (287)
T 2vx2_A 185 VALEMLFTGEPISAQEALLHGLLSKVVPE-AELQEETMRIARKIASLS--RPVVSLGKATFYKQ 245 (287)
T ss_dssp HHHHHHHHCCCEEHHHHHHHTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHCCCcceecCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHh
Confidence 99999999999999999999999999998 899999999999999998 89999999998764
|
| >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-51 Score=343.06 Aligned_cols=209 Identities=20% Similarity=0.270 Sum_probs=190.6
Q ss_pred ceeeEeCc-EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGD-VFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~-v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++ |++||||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|++||+|.|++++.... ..
T Consensus 11 i~~~~~~~gv~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~-----~~ 82 (263)
T 3moy_A 11 IATSRPVAGVGLIRLDRPD--ALNALNQTLEAEVLDAARDFDADLEIG-AIVVTGSERAFAAGADIAEMVTLT-----PH 82 (263)
T ss_dssp EEEECCSTTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEECCSSEEEESBCHHHHTTCC-----HH
T ss_pred EEEEEeCCeEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCeeCCcChHHHhccC-----ch
Confidence 56788887 9999999997 789999999999999999999999999 999999999999999999986521 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
. .+.+.++.++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++|
T Consensus 83 ~--~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG- 157 (263)
T 3moy_A 83 Q--ARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADT-ARFGQPEITLGI-LPGLGGTQRLTRAVG- 157 (263)
T ss_dssp H--HHHTTTTHHHHHHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETT-CEEECGGGGGTC-CCSSSTTTHHHHHHC-
T ss_pred h--HHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCC-CEEeCcccccCC-CCchhHHHHHHHHhC-
Confidence 1 22455677889999999999999999999999999999999999998 899999999999 78776 679999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
..++++++++|+.++|+||+++||||+|+|+ +++.+++.++|++++..| +.+++.+|+.++...
T Consensus 158 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 221 (263)
T 3moy_A 158 KAKAMDLCLTGRSLTAEEAERVGLVSRIVPA-ADLLDEALAVAQRIARMS--RPAGRAVKDAINEAF 221 (263)
T ss_dssp HHHHHHHHHHCCEEEHHHHHHTTSCSEEECG-GGHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCCHHHHHHCCCccEecCc-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998 899999999999999998 999999999997653
|
| >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-50 Score=343.03 Aligned_cols=209 Identities=20% Similarity=0.287 Sum_probs=188.2
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|++||+|.|++++.... . ..
T Consensus 27 v~~~~~~~va~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~---~-~~- 98 (278)
T 3h81_A 27 ILVERDQRVGIITLNRPQ--ALNALNSQVMNEVTSAATELDDDPDIG-AIIITGSAKAFAAGADIKEMADLT---F-AD- 98 (278)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHTCTTCC-EEEEECCSSEEECCBCSHHHHTCC---H-HH-
T ss_pred EEEEEECCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHhhCCCeE-EEEEECCCCCeecCcCHHHHhccC---h-hh-
Confidence 678899999999999997 789999999999999999999999999 999999999999999999987531 1 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
.+...+...+.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus 99 --~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~lGl-~p~~g~~~~L~r~vG-~ 173 (278)
T 3h81_A 99 --AFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADT-AKFGQPEIKLGV-LPGMGGSQRLTRAIG-K 173 (278)
T ss_dssp --HHHHTTTGGGHHHHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETT-CEEECGGGGGTC-CCCSSHHHHHHHHHC-H
T ss_pred --HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCC-CEEECchhhcCc-CCCccHHHHHHHHhC-H
Confidence 11222222378899999999999999999999999999999999998 899999999999 78776 679999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
.++++++++|++++|+||+++||||+|+|+ +++.+++.++|++|+..| +.++..+|+.++...
T Consensus 174 ~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~ 236 (278)
T 3h81_A 174 AKAMDLILTGRTMDAAEAERSGLVSRVVPA-DDLLTEARATATTISQMS--ASAARMAKEAVNRAF 236 (278)
T ss_dssp HHHHHHHHHCCCEEHHHHHHHTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCcCHHHHHHCCCccEEeCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhh
Confidence 999999999999999999999999999998 889999999999999998 999999999987643
|
| >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-50 Score=337.03 Aligned_cols=210 Identities=20% Similarity=0.296 Sum_probs=189.0
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|+.||+|.|++++... . ..
T Consensus 7 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~---~--~~- 77 (258)
T 2pbp_A 7 IAARQEGAVGIIELARPD--VLNALSRQMVAEIVAAVEAFDRNEKVR-VIVLTGRGRAFAAGADIQEMAKD---D--PI- 77 (258)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCCCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTEEECCCCHHHHHTC---C--HH-
T ss_pred EEEEeeCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCCccCCcCHHHHhcc---c--ch-
Confidence 457889999999999997 889999999999999999999999999 99999999999999999987642 1 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+...+ +++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus 78 ~~~~~~~~-~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-~ 153 (258)
T 2pbp_A 78 RLEWLNQF-ADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSA-AEFGFPEVNLGV-MPGAGGTQRLTKLIG-P 153 (258)
T ss_dssp HHHHHCTT-HHHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEETT-CEEECGGGGGTC-CCCSSHHHHHHHHHC-H
T ss_pred hHHHHHHH-HHHHHHHhCCCCEEEEEcCEEEhHHHHHHHhCCEEEEcCC-CEEECcccccCC-CCcccHHHHHHHHhC-H
Confidence 12223334 6788899999999999999999999999999999999998 899999999999 78776 579999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
.++++++++|+.++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++....
T Consensus 154 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~ 217 (258)
T 2pbp_A 154 KRALEWLWTGARMSAKEAEQLGIVNRVVSP-ELLMEETMRLAGRLAEQP--PLALRLIKEAVQKAVD 217 (258)
T ss_dssp HHHHHHHHHCCCEEHHHHHHTTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccCHHHHHHcCCcceeeCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999998 899999999999999998 8999999999976543
|
| >2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=344.29 Aligned_cols=214 Identities=18% Similarity=0.285 Sum_probs=187.2
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|+.||+|.|++++..... ......
T Consensus 11 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~~~-~~~~~~ 86 (276)
T 2j5i_A 11 VKVEIEDGIAFVILNRPE--KRNAMSPTLNREMIDVLETLEQDPAAG-VLVLTGAGEAWTAGMDLKEYFREVD-AGPEIL 86 (276)
T ss_dssp EEEEEETEEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHTCTTEE-EEEEEESTTCSBCCBCHHHHHHHHH-HSCTTH
T ss_pred EEEEEeCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCCcCCcChhhHhhccc-cchhHH
Confidence 567889999999999997 899999999999999999999999999 9999999999999999998743110 000111
Q ss_pred HHHHHHHHHHH-HHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 82 LHYMVESFRPV-VAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 82 ~~~~~~~~~~~-~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
...+.....++ +.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+ +|++| +++|++++|
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG- 163 (276)
T 2j5i_A 87 QEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADE-ATFGLSEINWGI-PPGNLVSKAMADTVG- 163 (276)
T ss_dssp HHHHHHHHHHHHTTTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETT-CEEECGGGGGTC-CCCTTHHHHHHHHSC-
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCC-CEEeCcccccCC-CCcchHHHHHHHHhC-
Confidence 12222223343 67889999999999999999999999999999999998 899999999999 78776 579999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
..++++++++|+.++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 164 ~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~ 226 (276)
T 2j5i_A 164 HRQSLMYIMTGKTFGGQKAAEMGLVNESVPL-AQLREVTIELARNLLEKN--PVVLRAAKHGFKRC 226 (276)
T ss_dssp HHHHHHHHHHCCEEEHHHHHHHTSSSEEECH-HHHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcccHHHHHHcCCccEeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997 899999999999999998 89999999998754
|
| >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=336.51 Aligned_cols=208 Identities=21% Similarity=0.316 Sum_probs=189.9
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEec-CCCcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTS-HGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g-~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|+|||| +.|++|.+|+.+|.+++++++.|+++| +||+|| .|+.||+|.|++++.. . . .
T Consensus 11 i~~~~~~~v~~itlnrp---~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~~g~~F~aG~Dl~~~~~--~-~---~ 80 (265)
T 2ppy_A 11 LTVFKEDGIAEIHLHIN---KSNSYDLEFYKEFNAAIDDIRFDPDIK-VVIVMSDVPKFFSAGADINFLRS--A-D---P 80 (265)
T ss_dssp EEEEEETTEEEEEECSS---TTCCBCHHHHHHHHHHHHHHHTCTTCC-EEEEEECSTTEEECCBCHHHHTT--S-C---H
T ss_pred EEEEeeCCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEEcCCCCeeeeCcCHHHHhc--c-c---h
Confidence 56788999999999999 899999999999999999999999999 999999 8999999999998764 1 1 1
Q ss_pred HHHHHHHHH-HHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCc-eeeccccccCcCCChhh-HHHHHHHh
Q 026127 81 RLHYMVESF-RPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKG-VLYMSEVDIGLTLPDYF-AALFRAKV 157 (243)
Q Consensus 81 ~~~~~~~~~-~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~-~f~~pe~~~Gl~~p~~g-~~~l~~~~ 157 (243)
....+.+.+ ++++.+|.++||||||+|||+|+|||++|+++||+|||+++ + +|++||+++|+ +|++| +++|++++
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-ag~f~~pe~~~Gl-~p~~g~~~~l~~~v 158 (265)
T 2ppy_A 81 RFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDE-AGKIGLPEVSLGV-LAGTGGTQRLARLI 158 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHTSSEEEEETT-CCCEECCGGGGTC-CCTTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCEEEEECCEEeeHHHHHHHhCCEEEEeCC-CCEEECcccccCC-CCCchHHHHHHHHh
Confidence 122344556 78889999999999999999999999999999999999998 8 99999999999 78876 57899999
Q ss_pred CCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
| ..++++++++|+.++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 159 G-~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 222 (265)
T 2ppy_A 159 G-YSRALDMNITGETITPQEALEIGLVNRVFPQ-AETRERTREYARKLANSA--TYAVSNIKLAIMNG 222 (265)
T ss_dssp C-HHHHHHHHHHCCCBCHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHhCCccCHHHHHHCCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence 9 9999999999999999999999999999998 899999999999999998 89999999998764
|
| >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-50 Score=337.55 Aligned_cols=215 Identities=21% Similarity=0.314 Sum_probs=190.3
Q ss_pred ceeeEeCcEEEEEEc-CCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLT-GSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln-~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|+|| ||+ +.|++|.+|+.+|.+++++++.|+. | +||+||.|+.||+|.|++++..... .....
T Consensus 7 i~~~~~~~v~~itln~rp~--~~Nal~~~~~~~L~~al~~~~~d~~-r-~vvltg~g~~F~aG~Dl~~~~~~~~-~~~~~ 81 (261)
T 2gtr_A 7 IVVRKQDGFTHILLSTKSS--ENNSLNPEVMREVQSALSTAAADDS-K-LVLLSAVGSVFCCGLDFIYFIRRLT-DDRKR 81 (261)
T ss_dssp EEEEEETTEEEEEECCSSS--STTEECHHHHHHHHHHHHHHHHSSC-S-CEEEEESSSCSBCEECHHHHHHHHH-HCHHH
T ss_pred EEEEEeCCEEEEEECCCCc--cCCCCCHHHHHHHHHHHHHHhcCCC-E-EEEEecCCCccccccCchhhhhccc-cchhh
Confidence 567889999999999 697 8999999999999999999999874 8 9999999999999999998754210 01112
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG- 158 (261)
T 2gtr_A 82 ESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEK-AWFQTPYTTFGQ-SPDGCSTVMFPKIMG- 158 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETT-CEEECCTTTTTC-CCCTTHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCC-CEEeCchhccCC-CccchHHHHHHHHcC-
Confidence 23344556778899999999999999999999999999999999999998 899999999999 68776 569999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
...+++++++|+.++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++....
T Consensus 159 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~ 223 (261)
T 2gtr_A 159 GASANEMLLSGRKLTAQEACGKGLVSQVFWP-GTFTQEVMVRIKELASCN--PVVLEESKALVRCNMK 223 (261)
T ss_dssp HHHHHHHHHHCCCEEHHHHHHTTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHcCCCCCHHHHHHCCCcccccCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999998 889999999999999998 9999999999976543
|
| >3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-50 Score=338.94 Aligned_cols=207 Identities=19% Similarity=0.227 Sum_probs=188.1
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHH---hcCCCcch
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQ---AAGSRTGA 78 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~---~~~~~~~~ 78 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|+.||+|.|++++. .... ..
T Consensus 7 v~~~~~~~v~~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~~~~-~~- 81 (266)
T 3fdu_A 7 LNANLEGGVLTLAINRPE--AKNALYGELYLWIAKALDEADQNKDVR-VVVLRGAEHDFTAGNDMKDFMGFVQNPN-AG- 81 (266)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSCSBCCBCHHHHHHHHHSCC-CS-
T ss_pred EEEEEECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEECCCCCeECCcCHHHHhhhccccc-hh-
Confidence 678899999999999997 899999999999999999999999999 999999999999999999987 4221 11
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHh
Q 026127 79 RERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKV 157 (243)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~ 157 (243)
. .....+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++
T Consensus 82 ~----~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~v 155 (266)
T 3fdu_A 82 P----AGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNT-ALFQIPFVSLGL-SPEGGASQLLVKQA 155 (266)
T ss_dssp C----GGGSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTT-CEEECCTTTTTC-CCCTTHHHHHHHHH
T ss_pred h----HHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCC-CEEECchhhhCC-CCcchHHHHHHHHh
Confidence 0 12234567888999999999999999999999999999999999998 899999999999 68776 57999999
Q ss_pred CCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
| ..++++++++|+.++|+||+++||||+|+| ++.+++.++|++++..| +.++..+|+.++..
T Consensus 156 G-~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~---~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 217 (266)
T 3fdu_A 156 G-YHKAAELLFTAKKFNAETALQAGLVNEIVE---DAYATAQATAQHLTALP--LASLKQTKALMKHD 217 (266)
T ss_dssp C-HHHHHHHHHHCCEECHHHHHHTTSCSEECS---CHHHHHHHHHHHHHTSC--HHHHHHHHHHHTTT
T ss_pred C-HHHHHHHHHhCCCcCHHHHHHCCCHHHHHH---HHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence 9 999999999999999999999999999998 69999999999999998 99999999999864
|
| >3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-50 Score=338.99 Aligned_cols=207 Identities=22% Similarity=0.327 Sum_probs=185.5
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|+.||+|.|++++...
T Consensus 11 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vvltg~g~~F~aG~Dl~~~~~~--------- 78 (256)
T 3pe8_A 11 LLVDTTDRVRTLTLNRPQ--SRNALSAELRSTFFRALSDAQNDDDVD-VVIVTGADPVFCAGLDLKELGDT--------- 78 (256)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCS-EEEEEESTTCSBCCBCTTTC------------
T ss_pred EEEEEECCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHHhCCCeE-EEEEECCCCCccCCcCHHHHhhh---------
Confidence 678899999999999997 889999999999999999999999999 99999999999999999987541
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
..+..+..++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus 79 -----~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG-~ 150 (256)
T 3pe8_A 79 -----TELPDISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASEN-AKFADTHARVGL-MPTWGLSVRLPQKVG-V 150 (256)
T ss_dssp -----------CCCCCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCHHHHTC-CCCSSHHHHHHHHHC-H
T ss_pred -----HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEcCC-CEEECchhhhCC-CCcccHHHHHHHhcC-H
Confidence 11233457788999999999999999999999999999999998 899999999999 78776 579999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhc
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLG 231 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~ 231 (243)
.++++++++|++++|+||+++||||+|+|+ +++.+++.++|++++..| +.+++.+|+.++......++
T Consensus 151 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~~~~~~~ 218 (256)
T 3pe8_A 151 GLARRMSLTGDYLSAQDALRAGLVTEVVAH-DDLLTAARRVAASIVGNN--QKAVRALLDSYHRIDALQTG 218 (256)
T ss_dssp HHHHHHHHHCCCEEHHHHHHHTSCSCEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCCeEEeCH-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhhcCCHH
Confidence 999999999999999999999999999998 899999999999999998 99999999999766544433
|
| >3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-50 Score=340.46 Aligned_cols=212 Identities=24% Similarity=0.316 Sum_probs=192.3
Q ss_pred ceeeEeC-cEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHG-DVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~-~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.+++++ +|++|+|||| +.|++|.+|+.+|.+++++++.|+++| +|||||.|++||+|.|++++.... .+..
T Consensus 15 v~~~~~~~~v~~itlnrp---~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~---~~~~ 87 (272)
T 3qk8_A 15 LRFEPGEHGVLNLVLDSP---GLNSVGPQMHRDLADVWPVIDRDPDVR-VVLVRGEGKAFSSGGSFELIDETI---GDYE 87 (272)
T ss_dssp EEEEECSTTEEEEEECCH---HHHEECHHHHHHHHHHHHHHHHCTTCS-EEEEEESSSCSBCEECHHHHHHHH---HCHH
T ss_pred EEEEEeCCCEEEEEECCC---CcCCCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCCeeCCcCHHHHhccc---cchH
Confidence 5677875 8999999999 699999999999999999999999999 999999999999999999886521 1123
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+...+++++.++.++||||||+|||+|+|+|++|+++||+|||+++ ++|++||+++|+ +|++| +++|++++|
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG- 164 (272)
T 3qk8_A 88 GRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASAT-AKIIDGHTKLGV-AAGDHAAICWPLLVG- 164 (272)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETT-CEEECCHHHHTS-CSCSSHHHHTHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC-CEEECchhccCC-CCCccHHHHHHHHhC-
Confidence 33456667788999999999999999999999999999999999999998 899999999999 68776 579999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
..++++++++|+.++|+||+++||||+|+|+ +++.+++.++|++|+..| +.+++.+|+.++...
T Consensus 165 ~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 228 (272)
T 3qk8_A 165 MAKAKYYLLTCETLSGEEAERIGLVSTCVDD-DEVLPTATRLAENLAQGA--QNAIRWTKRSLNHWY 228 (272)
T ss_dssp HHHHHHHHHHCCCEEHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHCCCCcEeeCH-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 889999999999999998 999999999997543
|
| >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-49 Score=337.11 Aligned_cols=215 Identities=18% Similarity=0.239 Sum_probs=187.4
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++ +||+||.|+.||+|.|++++..... ......
T Consensus 28 i~~~~~~~va~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~v--~vVltg~g~~FcaG~Dl~~~~~~~~-~~~~~~ 102 (280)
T 2f6q_A 28 LVVTSEDGITKIMFNRPK--KKNAINTEMYHEIMRALKAASKDDSI--ITVLTGNGDYYSSGNDLTNFTDIPP-GGVEEK 102 (280)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHSSCS--EEEEEESTTCSBCCBCC----CCCT-THHHHH
T ss_pred EEEEEECCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHHhhCCCE--EEEEeCCCCCcccCCCHHHHhhcCc-chhhHH
Confidence 567889999999999997 89999999999999999999999997 7899999999999999998764211 110111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
...+...+++++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+ +|++| ++++++++| .
T Consensus 103 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG-~ 179 (280)
T 2f6q_A 103 AKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDR-ATFHTPFSHLGQ-SPEGCSSYTFPKIMS-P 179 (280)
T ss_dssp HHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETT-CEEECCTGGGTC-CCCTTHHHHHHHHHC-H
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCC-cEEECchHhhCC-CCcccHHHHHHHHhC-H
Confidence 2334456778889999999999999999999999999999999999988 899999999999 68776 579999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
.++++++++|+.++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++....
T Consensus 180 ~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~ 243 (280)
T 2f6q_A 180 AKATEMLIFGKKLTAGEACAQGLVTEVFPD-STFQKEVWTRLKAFAKLP--PNALRISKEVIRKRER 243 (280)
T ss_dssp HHHHHHHTTCCCEEHHHHHHTTSCSEEECT-TTHHHHHHHHHHHHTTSC--HHHHHHHHHHHHGGGH
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCcceEECH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999998 889999999999999998 8999999999976543
|
| >2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-50 Score=341.50 Aligned_cols=215 Identities=20% Similarity=0.297 Sum_probs=190.4
Q ss_pred ceeeEeCcEEEEEEc-CCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLT-GSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln-~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|+|| ||+ +.|++|.+|+.+|.+++++++.|+. | +||+||.|+.||+|.|++++..... .....
T Consensus 25 v~~~~~~~v~~itln~rp~--~~Nal~~~m~~~L~~al~~~~~d~~-r-~vVltg~G~~FcaG~Dl~~~~~~~~-~~~~~ 99 (291)
T 2fbm_A 25 IVVKKEDGFTQIVLSTRST--EKNALNTEVIKEIVNALNSAAADDS-K-LVLFSAAGSVFCCGLDFGYFVKHLR-NNRNT 99 (291)
T ss_dssp EEEEECSSEEEEEECCSSS--STTCBCHHHHHHHHHHHHHHHHSSC-S-EEEEEECSSCSBCCBCHHHHHHHHH-HCHHH
T ss_pred EEEEEeCCEEEEEECCCCC--CCCCCCHHHHHHHHHHHHHHhcCCC-e-EEEEECCCCCccCCcCHHHHHhccc-ccchh
Confidence 567889999999999 697 8999999999999999999999875 8 9999999999999999998754110 01012
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+...+++++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+ +|++| +++|++++|
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~lGl-~p~~g~~~~L~r~vG- 176 (291)
T 2fbm_A 100 ASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEK-AWFQTPYTTFGQ-SPDGCSSITFPKMMG- 176 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETT-CEEECCHHHHTC-CCCTTHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCC-CEEECcHHhcCC-CCcccHHHHHHHHHh-
Confidence 23344556778889999999999999999999999999999999999998 899999999999 68776 569999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
..++++++++|+.++|+||+++|||++|+|+ +++.+++.++|++++..| +.++..+|+.++....
T Consensus 177 ~~~A~el~ltg~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~ 241 (291)
T 2fbm_A 177 KASANEMLIAGRKLTAREACAKGLVSQVFLT-GTFTQEVMIQIKELASYN--PIVLEECKALVRCNIK 241 (291)
T ss_dssp HHHHHHHHTSCCEEEHHHHHHTTSCSEEECS-TTSHHHHHHHHHHHTTSC--HHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHcCCccCHHHHHHCCCcceecCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999998 899999999999999998 9999999999976443
|
| >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=345.58 Aligned_cols=213 Identities=17% Similarity=0.248 Sum_probs=187.8
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|||||| +.|++|.+|+.+|.++++++++|++|| +|||||.| ++||+|.|++++...........
T Consensus 11 i~~~~~~~va~itlnrP---~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~ 86 (287)
T 3gkb_A 11 LRVSSEHGVARIILDNP---PVNVIGATMMRELRTVLTTLADDSSVR-VIVFSSADPEFFLAHVDMRIGEKMDALQELAA 86 (287)
T ss_dssp EEEEEETTEEEEEECCT---TTTCBCHHHHHHHHHHHHHHHTCTTCC-EEEEEESSSSEEECCBCTTGGGSHHHHHHHHH
T ss_pred EEEEEECCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHHcCCCee-EEEEecCCCCceeCCcCHHHHhhccccchhhH
Confidence 57889999999999999 679999999999999999999999999 99999998 89999999998753100000000
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEec-CCceeeccccccCcCCChhh-HHHHHHHhC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRR-DKGVLYMSEVDIGLTLPDYF-AALFRAKVG 158 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~-~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g 158 (243)
....+...+++++.+|.++||||||+|||+|+|||++|+++||+|||++ + ++|++||+++|+ +|++| +++|++++|
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~-a~f~~pe~~lGl-~p~~g~~~~L~r~vG 164 (287)
T 3gkb_A 87 SAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAET-AGLGQIEALMGI-IPGGGGTQYLRGRVG 164 (287)
T ss_dssp TSCTTCCTTHHHHHHHHHCSSEEEEEECSEEETHHHHHHHHSSEEEEETTT-CEEECGGGGGTS-CCCSSHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCC-cEEECcccccCC-CCCchHHHHHHHHhC
Confidence 0111233467789999999999999999999999999999999999999 7 899999999999 78776 579999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 026127 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCP 224 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~ 224 (243)
..++++++++|++++|+||+++||||+|+|+ +++.+++.++|++|+..| +.+++.+|+.++.
T Consensus 165 -~~~A~ellltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~lA~~la~~~--p~a~~~~K~~l~~ 226 (287)
T 3gkb_A 165 -RNRALEVVLTADLFDAETAASYGWINRALPA-DELDEYVDRVARNIAALP--DGVIEAAKRSLPA 226 (287)
T ss_dssp -HHHHHHHHHHCCCEEHHHHHHHTSSSEEECH-HHHHHHHHHHHHHHHTSC--TTHHHHHHHHSCC
T ss_pred -HHHHHHHHHcCCCCCHHHHHHCCCCcEEeCh-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHc
Confidence 9999999999999999999999999999998 899999999999999998 8999999999875
|
| >3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-51 Score=345.54 Aligned_cols=216 Identities=19% Similarity=0.215 Sum_probs=189.8
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|+.||+|.|++++..... ...
T Consensus 14 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~~--- 86 (258)
T 3lao_A 14 VTREQRGHLFLIGLDRAG--KRNAFDSAMLADLALAMGEYERSEESR-CAVLFAHGEHFTAGLDLMELAPKLA-ASG--- 86 (258)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSCSBCCBCHHHHGGGCB-TTB---
T ss_pred EEEEEECCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhhCCCcE-EEEEECCCCCeecCcCHHHHhhccc-hhh---
Confidence 678899999999999997 889999999999999999999999999 9999999999999999999876321 110
Q ss_pred HHHHHHHHHHHHHHH-hcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 82 LHYMVESFRPVVAAM-MDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l-~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
..+...+++++.++ .++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++|
T Consensus 87 -~~~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG- 162 (258)
T 3lao_A 87 -FRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARG-TRFAHLEVLRGI-PPLGGSTVRFPRAAG- 162 (258)
T ss_dssp -CCCCTTCCCTTSCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETT-CEEECGGGGTCC-CSSCCCCSHHHHHHC-
T ss_pred -HHHHHHHHHHHHHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCC-CEEeCcccccCC-CCCccHHHHHHHHhC-
Confidence 01122334556778 8999999999999999999999999999999998 899999999999 78776 579999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhc
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLG 231 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~ 231 (243)
..++++++++|++++|+||+++||||+|+|+ +++.+++.++|++++..| +.+++.+|+.++......++
T Consensus 163 ~~~A~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~~~ 231 (258)
T 3lao_A 163 WTDAMRYILTGDEFDADEALRMRLLTEVVEP-GEELARALEYAERIARAA--PLAVRAALQSAFQGRDEGDD 231 (258)
T ss_dssp HHHHHHHHTTCCCEEHHHHHHTTSCSEEECT-TCHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHcCCCCCHHHHHHcCCCcEeeCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhcCCHH
Confidence 9999999999999999999999999999998 889999999999999998 99999999999876444333
|
| >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-49 Score=334.39 Aligned_cols=215 Identities=17% Similarity=0.237 Sum_probs=192.1
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC-CCcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH-GKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~-g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|+|||| +.|++|.+|+.+|.+++++++.|+++| +||++|. |++||+|.|++++... . ..
T Consensus 7 v~~~~~~~v~~itlnrp---~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~~g~~F~aG~Dl~~~~~~----~-~~ 77 (260)
T 1sg4_A 7 VEPDAGAGVAVMKFKNP---PVNSLSLEFLTELVISLEKLENDKSFR-GVILTSDRPGVFSAGLDLTEMCGR----S-PA 77 (260)
T ss_dssp EEEETTTTEEEEEECCT---TTTEECHHHHHHHHHHHHHHHHCTTCC-EEEEEESSTEESCCEECGGGGSSC----C-HH
T ss_pred EEEEecCCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEEcCCCCceEcCcCHHHHhcc----C-HH
Confidence 34566789999999999 679999999999999999999999999 9999998 7999999999987531 1 22
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEe--cCCceeeccccccCcCCChhh-HHHHHHHh
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMR--RDKGVLYMSEVDIGLTLPDYF-AALFRAKV 157 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~--~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~ 157 (243)
....+.+.+++++.+|.++||||||+|||+|+|||++|+++||+||++ ++ ++|++||+++|+ +|++| +++|++++
T Consensus 78 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~v 155 (260)
T 1sg4_A 78 HYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPR-YCIGLNETQLGI-IAPFWLKDTLENTI 155 (260)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTT-CCBSCCGGGGTC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCC-CEEeCchhhhCC-CCchhHHHHHHHHh
Confidence 334455667889999999999999999999999999999999999999 77 899999999999 68776 57999999
Q ss_pred CCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhc
Q 026127 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLG 231 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~ 231 (243)
| ..++++++++|+.++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++......++
T Consensus 156 G-~~~a~~llltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~~~ 225 (260)
T 1sg4_A 156 G-HRAAERALQLGLLFPPAEALQVGIVDQVVPE-EQVQSTALSAIAQWMAIP--DHARQLTKAMMRKATASRLV 225 (260)
T ss_dssp C-HHHHHHHHHHTCCBCHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHcCCcCCHHHHHHcCCCCEecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhhccHH
Confidence 9 9999999999999999999999999999987 899999999999999998 89999999999876554443
|
| >1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-49 Score=337.61 Aligned_cols=220 Identities=16% Similarity=0.176 Sum_probs=189.8
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCc-----
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRT----- 76 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~----- 76 (243)
+.++++++|++||||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|++||+|.|++++.......
T Consensus 11 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~ 87 (280)
T 1pjh_A 11 ISYRIEGPFFIIHLINPD--NLNALEGEDYIYLGELLELADRNRDVY-FTIIQSSGRFFSSGADFKGIAKAQGDDTNKYP 87 (280)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEECBTTBSBCCBCHHHHHC-------CCS
T ss_pred eEEEEECCEEEEEECCCc--ccCCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCccCCcCHHHHhhcccccccchh
Confidence 568889999999999997 899999999999999999999999999 999999999999999999875321100
Q ss_pred chH-HHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEe-cCCceeeccccccCcCCChhh-HHHH
Q 026127 77 GAR-ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMR-RDKGVLYMSEVDIGLTLPDYF-AALF 153 (243)
Q Consensus 77 ~~~-~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~-~~~~~f~~pe~~~Gl~~p~~g-~~~l 153 (243)
... .....+....++++.+|.++||||||+|||+|+|||++|+++||+|||+ ++ ++|++||+++|+ +|++| +++|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~-a~f~~pe~~lGl-~p~~g~~~~l 165 (280)
T 1pjh_A 88 SETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDK-VYLLYPFANLGL-ITEGGTTVSL 165 (280)
T ss_dssp SHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTT-CEEECCHHHHTC-CCCTTHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCC-CEEeCchhhcCC-CCCccHHHHH
Confidence 000 1111222334678899999999999999999999999999999999999 87 899999999999 68776 5799
Q ss_pred HHHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCH----hHHHHHHH-HHHHHHhcCCCChhHHHHHHHHHhHHHHH
Q 026127 154 RAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSE----EQVAEASM-RLAKQLAGRKWAGEVYAEIRKSLCPDLCG 228 (243)
Q Consensus 154 ~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~----~~l~~~a~-~~a~~l~~~~~~~~a~~~~k~~l~~~~~~ 228 (243)
++++| ..++++++++|+.++|+||+++|||++|+|+. +++.+++. +++++++..| +.++..+|+.++.....
T Consensus 166 ~r~vG-~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~~~~~~l~~~a~~~~a~~la~~~--~~a~~~~K~~l~~~~~~ 242 (280)
T 1pjh_A 166 PLKFG-TNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLY--LPSCLGMKKLLKSNHID 242 (280)
T ss_dssp HHHHC-HHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHTTTHH
T ss_pred HHHhC-HHHHHHHHHhCCCCCHHHHHHCCCcceeeCCccccHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhHHH
Confidence 99999 99999999999999999999999999999983 37998885 9999999998 99999999999765443
Q ss_pred H
Q 026127 229 V 229 (243)
Q Consensus 229 ~ 229 (243)
.
T Consensus 243 ~ 243 (280)
T 1pjh_A 243 A 243 (280)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-50 Score=340.75 Aligned_cols=212 Identities=17% Similarity=0.265 Sum_probs=184.5
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEec-----CC-CcccCCCChhhHHhcCCC
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTS-----HG-KFFSNGFDLAWAQAAGSR 75 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g-----~g-~~F~~G~Dl~~~~~~~~~ 75 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+|| .| ++||+|.|++++.....
T Consensus 12 v~~~~~~~va~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~~- 87 (275)
T 4eml_A 12 ILYYKAGGIAKIVINRPH--KRNAFRPQTVFELYDAFCNAREDNRIG-VVLLTGAGPHSDGKYAFCSGGDQSVRGEGGY- 87 (275)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEECCCCTTSCCEEECCBCCC--------
T ss_pred EEEEEECCEEEEEecCCC--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEeCCCcCcCCCCceeCCcChhhhhcccc-
Confidence 678899999999999997 889999999999999999999999999 999999 88 59999999998764211
Q ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHH
Q 026127 76 TGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRA 155 (243)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~ 155 (243)
..........+.+++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+.+|++|+++|++
T Consensus 88 ---~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl~p~~~g~~~L~r 163 (275)
T 4eml_A 88 ---IDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADN-AIFGQTGPKVGSFDGGFGSSYLAR 163 (275)
T ss_dssp ----------CCCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCHHHHTCCCCSTTTHHHHH
T ss_pred ---cchhhHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC-CEEECcccccCCCCCccHHHHHHH
Confidence 1101111123567888999999999999999999999999999999999998 899999999998445556789999
Q ss_pred HhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 156 KVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 156 ~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
++| ..++++++++|+.++|+||+++||||+|+|+ +++.+++.++|++|+..| +.+++.+|+.++..
T Consensus 164 ~vG-~~~A~~llltg~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 229 (275)
T 4eml_A 164 IVG-QKKAREIWYLCRQYSAQEAERMGMVNTVVPV-DRLEEEGIQWAKEILSKS--PLAIRCLKAAFNAD 229 (275)
T ss_dssp HHC-HHHHHHHHHHCCCEEHHHHHHHTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHT
T ss_pred HhH-HHHHHHHHHhCCCcCHHHHHHcCCccEeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence 999 9999999999999999999999999999998 889999999999999998 99999999999764
|
| >1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=336.29 Aligned_cols=213 Identities=24% Similarity=0.306 Sum_probs=190.2
Q ss_pred ceeeE-eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.+++ +++|++|+|||| +.|++|.+|+.+|.+++++++.|+++| +||+||.|+.||+|.|++ +.... ..+.+
T Consensus 12 v~~~~~~~~v~~itlnrp---~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~-~~~~~--~~~~~ 84 (264)
T 1wz8_A 12 LAFAWPRPGVLEITFRGE---KLNAMPPALHRGLARVWRDLEAVEGVR-AVLLRGEGGVFSAGGSFG-LIEEM--RASHE 84 (264)
T ss_dssp EEEEEEETTEEEEEECCS---GGGCBCHHHHHHHHHHHHHHTTCTTCS-EEEEEEGGGCCBCCBCHH-HHHHH--HHCHH
T ss_pred EEEEEccCCEEEEEeCCC---CcCCCCHHHHHHHHHHHHHHhcCCCee-EEEEECCCCCCcccCccc-ccccc--ccchH
Confidence 56788 899999999999 699999999999999999999999999 999999999999999999 65310 00011
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+.+.+++++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+ +|++| +++|++++|
T Consensus 85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG- 161 (264)
T 1wz8_A 85 ALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKG-TRLLDGHLRLGV-AAGDHAVLLWPLLVG- 161 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCHHHHTS-CCTTTHHHHTHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCC-CEEeCchhhcCc-CCCccHHHHHHHHhC-
Confidence 22334566788899999999999999999999999999999999999998 899999999999 68776 579999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
..++++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++....
T Consensus 162 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~ 226 (264)
T 1wz8_A 162 MAKAKYHLLLNEPLTGEEAERLGLVALAVED-EKVYEKALEVAERLAQGP--KEALHHTKHALNHWYR 226 (264)
T ss_dssp HHHHHHHHHHTCCEEHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHCCCceeecCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 889999999999999998 8999999999876543
|
| >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-49 Score=338.38 Aligned_cols=217 Identities=18% Similarity=0.300 Sum_probs=191.1
Q ss_pred ceeeE-eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCc---c
Q 026127 2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRT---G 77 (243)
Q Consensus 2 ~~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~---~ 77 (243)
+.+++ +++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|++||+|.|++++....... .
T Consensus 5 v~~~~~~~~v~~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~ 81 (275)
T 1dci_A 5 IQVTSAQKHVLHVQLNRPE--KRNAMNRAFWRELVECFQKISKDSDCR-AVVVSGAGKMFTSGIDLMDMASDILQPPGDD 81 (275)
T ss_dssp EEEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHTCTTCC-EEEEEESTTCSBCCBCHHHHHHHHTSCCCSS
T ss_pred EEEEEcCCCEEEEEECCCc--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCccCCcChHHHhhcccccccch
Confidence 56777 5789999999997 899999999999999999999999999 999999999999999999876421000 1
Q ss_pred h---HHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHH
Q 026127 78 A---RERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALF 153 (243)
Q Consensus 78 ~---~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l 153 (243)
. ......+...+++++.+|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l 159 (275)
T 1dci_A 82 VARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQD-AFFQVKEVDVGL-AADVGTLQRL 159 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETT-CEEECCGGGGTS-CCCSSHHHHG
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCC-CEEeCcccccCC-CCCccHHHHH
Confidence 0 1122344456778889999999999999999999999999999999999998 899999999999 68776 5799
Q ss_pred HHHhCCH-HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 154 RAKVGSA-TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 154 ~~~~g~~-~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
++++| . ..+++++++|+.++|+||+++||||+|+|+.+++.+++.++|++++..| +.++..+|+.++...
T Consensus 160 ~r~vG-~~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~ 230 (275)
T 1dci_A 160 PKVIG-NRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKS--PVAVQGSKINLIYSR 230 (275)
T ss_dssp GGTCS-CHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHH
T ss_pred HHHhC-cHHHHHHHHHcCCCCCHHHHHHcCCcceecCChHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhc
Confidence 99999 7 8999999999999999999999999999875789999999999999998 999999999997654
|
| >3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-49 Score=337.70 Aligned_cols=215 Identities=17% Similarity=0.268 Sum_probs=186.4
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||++|.|+.||+|.|++++............
T Consensus 22 v~~~~~~~v~~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~ 98 (279)
T 3t3w_A 22 IDYDVSDRIATITLNRPE--AANAQNPELLDELDAAWTRAAEDNDVS-VIVLRANGKHFSAGHDLRGGGPVPDKLTLEFI 98 (279)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEECSSCSBCCBCCC--------CCHHHH
T ss_pred EEEEEECCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHhcCCCeE-EEEEECCCCceeeccChHhhhhcccccchHHH
Confidence 678899999999999997 899999999999999999999999999 99999999999999999988653211111222
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSAT 161 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~ 161 (243)
.......+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|.++.. +++++| ..
T Consensus 99 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl-~~~~~~~-~~~~vG-~~ 174 (279)
T 3t3w_A 99 YAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAED-ALFSDPVVLMDI-GGVEYHG-HTWELG-PR 174 (279)
T ss_dssp HHHHHHHTHHHHHHHHHCSSCEEEEECSEEEGGGHHHHTTSSEEEEETT-CEEECCGGGGTC-SSCSSCC-HHHHHC-HH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeEhHHHHHHHHhCCEEEecCC-CEEeCcHHhcCC-CCchHHH-HHhhcC-HH
Confidence 2333455677889999999999999999999999999999999999998 899999999999 5554433 399999 99
Q ss_pred HHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
++++++++|++++|+||+++||||+|+|+ +++.+++.++|++++..| +.+++.+|+.++...
T Consensus 175 ~A~~llltG~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 236 (279)
T 3t3w_A 175 KAKEILFTGRAMTAEEVAQTGMVNRVVPR-DRLDAETRALAGEIAKMP--PFALRQAKRAVNQTL 236 (279)
T ss_dssp HHHHHHHHCCCEEHHHHHHHTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCccCHHHHHHCCCCcEeeCh-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhh
Confidence 99999999999999999999999999998 899999999999999998 999999999998664
|
| >3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-49 Score=335.75 Aligned_cols=218 Identities=20% Similarity=0.308 Sum_probs=186.7
Q ss_pred ceee----EeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcc
Q 026127 2 CTLE----KHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTG 77 (243)
Q Consensus 2 ~~~~----~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~ 77 (243)
+.++ ++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|+.||+|.|++++........
T Consensus 9 v~~~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~~~~ 85 (267)
T 3oc7_A 9 VDYAGPAATGGPVARLTLNSPH--NRNALSTALVSQLHQGLRDASSDPAVR-VVVLAHTGGTFCAGADLSEAGSGGSPSS 85 (267)
T ss_dssp EEEECHHHHSSSEEEEEECCGG--GTSCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEECSSEEECCBC-----------C
T ss_pred cCCCCccceeCCEEEEEecCCC--ccCCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCceeCCcCchhhhhccCchh
Confidence 4566 78999999999997 889999999999999999999999999 9999999999999999998762111011
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhH-HHHHHH
Q 026127 78 ARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFA-ALFRAK 156 (243)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~-~~l~~~ 156 (243)
.......+.+.+++++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++|+ ++++ +
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~-~ 162 (267)
T 3oc7_A 86 AYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPR-SSFALTEARIGV-APAIISLTLLP-K 162 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTT-CEEECCGGGGTC-CCTTTHHHHTT-T
T ss_pred hhhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCC-CEEeCcccccCC-CcchhHHHHHH-H
Confidence 11223356777889999999999999999999999999999999999999998 899999999999 788874 6788 9
Q ss_pred hCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhc
Q 026127 157 VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLG 231 (243)
Q Consensus 157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~ 231 (243)
+| ..++++++++|+.++|+||+++||||+| + +++.+++.+++++++..| +.++..+|+.++......++
T Consensus 163 vG-~~~A~~l~ltg~~~~a~eA~~~GLv~~v--~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~ 231 (267)
T 3oc7_A 163 LS-ARAAARYYLTGEKFDARRAEEIGLITMA--A-EDLDAAIDQLVTDVGRGS--PQGLAASKALTTAAVLERFD 231 (267)
T ss_dssp SC-HHHHHHHHHHCCCBCHHHHHHHTSSSEE--C-SSHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred hC-HHHHHHHHHcCCccCHHHHHHCCChhhh--h-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhcCCHH
Confidence 99 9999999999999999999999999999 4 679999999999999998 99999999999876554444
|
| >3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-50 Score=338.18 Aligned_cols=208 Identities=17% Similarity=0.220 Sum_probs=182.5
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|+.||+|.|++ ... . ..
T Consensus 11 v~~~~~~~v~~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~-~~~----~--~~- 79 (265)
T 3rsi_A 11 LLVERDGPVVILTMNRPH--RRNALSTNMVSQFAAAWDEIDHDDGIR-AAILTGAGSAYCVGGDLS-DGW----M--VR- 79 (265)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCCCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCSEECC-----------------
T ss_pred EEEEEECCEEEEEEcCcc--cccCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCcccCcCCC-ccc----c--cc-
Confidence 678899999999999997 899999999999999999999999999 999999999999999998 221 1 11
Q ss_pred HHHHHHHHHH-HHHHH-h--cCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHH
Q 026127 82 LHYMVESFRP-VVAAM-M--DLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAK 156 (243)
Q Consensus 82 ~~~~~~~~~~-~~~~l-~--~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~ 156 (243)
...+....++ ++.++ . ++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +++|+++
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~ 157 (265)
T 3rsi_A 80 DGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEH-ATFGLPEVQRGL-VPGAGSMVRLKRQ 157 (265)
T ss_dssp -----CCCHHHHHHHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETT-CEEECGGGGGTC-CCTTTHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCC-CEEECchhccCC-CCCccHHHHHHHH
Confidence 1233334456 88888 8 999999999999999999999999999999998 899999999999 68776 6799999
Q ss_pred hCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 157 VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
+| ..++++++++|++++|+||+++||||+|+|+ +++.+++.++|++++..| +.++..+|+.++...
T Consensus 158 vG-~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 223 (265)
T 3rsi_A 158 IP-YTKAMEMILTGEPLTAFEAYHFGLVGHVVPA-GTALDKARSLADRIVRNG--PLAVRNAKEAIVRSG 223 (265)
T ss_dssp SC-HHHHHHHHHHCCCEEHHHHHHTTSCSEEEST-TCHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHT
T ss_pred hC-HHHHHHHHHcCCCCCHHHHHHCCCccEecCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhh
Confidence 99 9999999999999999999999999999998 899999999999999998 999999999997653
|
| >3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-50 Score=347.11 Aligned_cols=219 Identities=21% Similarity=0.246 Sum_probs=181.2
Q ss_pred ceeeEeC-cEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchH-
Q 026127 2 CTLEKHG-DVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGAR- 79 (243)
Q Consensus 2 ~~~~~~~-~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~- 79 (243)
|.+++++ +|++|+||||+ +.|++|.+|+.+|.+++++++.|++|| +|||||.|+.||+|.|++++..........
T Consensus 31 v~~~~~~~~Va~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~ 107 (298)
T 3qre_A 31 VLYEATPGGVAIITFNRAD--RLNAWGPDLAAGFYAAIDRAEADPGIR-VIVLTGRGRGFCAGAYLGSADAAAGYDKTMA 107 (298)
T ss_dssp EEEEECTTSEEEEEECCGG--GTTCCCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCSEECC----------------
T ss_pred EEEEEeCCCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCcccCcCHHHHhhccccccccc
Confidence 5678889 99999999997 889999999999999999999999999 999999999999999999876410000000
Q ss_pred --HHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHH
Q 026127 80 --ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAK 156 (243)
Q Consensus 80 --~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~ 156 (243)
.....+....+.++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+ +|++| +++|+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~ 185 (298)
T 3qre_A 108 KAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAG-AKFAAVFARRGL-IAEFGISWILPRL 185 (298)
T ss_dssp -------------CCTTGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETT-CEEECCCCHHHH-HCTTSHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCC-CEEECcccccCC-CcchhHHHHHHHh
Confidence 011222333456778899999999999999999999999999999999998 899999999999 68776 6799999
Q ss_pred hCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcC-CCChhHHHHHHHHHhHHHHHH
Q 026127 157 VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR-KWAGEVYAEIRKSLCPDLCGV 229 (243)
Q Consensus 157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~-~~~~~a~~~~k~~l~~~~~~~ 229 (243)
+| ..++++++++|++++|+||+++||||+|+|+ +++.+++.++|++|+.. | +.+++.+|+.++......
T Consensus 186 vG-~~~A~ellltg~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~A~~la~~~~--p~a~~~~K~~l~~~~~~~ 255 (298)
T 3qre_A 186 TS-WAVALDLLLSGRTFLAEEAAQLGLVKEVVTP-EQLMPRALEYAEDIARYCS--PSSMAVIKRQVYGDATRD 255 (298)
T ss_dssp SC-HHHHHHHHHHCCEEEHHHHHHTTSCSEEECG-GGHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHGGGGC-
T ss_pred cC-HHHHHHHHHcCCCCCHHHHHHcCCCeEecCH-HHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHhhhcCC
Confidence 99 9999999999999999999999999999998 89999999999999998 8 899999999998764433
|
| >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-49 Score=332.44 Aligned_cols=215 Identities=18% Similarity=0.271 Sum_probs=193.2
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|+.||+|.|++++... . ...
T Consensus 18 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~----~-~~~ 89 (257)
T 1szo_A 18 IRLERDGGVLLVTVHTEG--KSLVWTSTAHDELAYCFHDIACDRENK-VVILTGTGPSFCNEIDFTSFNLG----T-PHD 89 (257)
T ss_dssp EEEEEETTEEEEEECBTT--BSCEECHHHHHHHHHHHHHHHHCTTCC-EEEEECBTTBSBCEECGGGSCCS----S-HHH
T ss_pred EEEEEECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEEcCCCccccCcCchhhhcC----C-HHH
Confidence 578889999999999997 899999999999999999999999999 99999999999999999987421 1 222
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeec-cccccCcCCChhh-HHHHHHHhCC
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYM-SEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~-pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
...+...+++++.++.++||||||+|||+|+| |++|+++||+||++++ ++|++ ||+++|+ +|++| ++++++++|
T Consensus 90 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G-G~~LalacD~ria~~~-a~f~~~pe~~lGl-~p~~g~~~~l~r~vG- 165 (257)
T 1szo_A 90 WDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTN-APEIPVMSDIVLAAES-ATFQDGPHFPSGI-VPGDGAHVVWPHVLG- 165 (257)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCEEEEECSCBCS-STHHHHTSSEEEEETT-CEEECTTSGGGTC-CCTTTHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEECCchHH-HHHHHHHCCEEEEeCC-CEEecCccccccc-CCCccHHHHHHHHcC-
Confidence 23344556788899999999999999999995 9999999999999998 89999 9999999 68776 568999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhc
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLG 231 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~ 231 (243)
..++++++++|+.++|+||+++||||+|+|+ +++.+++.+++++++..| +.+++.+|+.++......++
T Consensus 166 ~~~A~~llltG~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~ 234 (257)
T 1szo_A 166 SNRGRYFLLTGQELDARTALDYGAVNEVLSE-QELLPRAWELARGIAEKP--LLARRYARKVLTRQLRRVME 234 (257)
T ss_dssp HHHHHHHHHTTCEEEHHHHHHHTSCSEEECH-HHHHHHHHHHHHHHHTSC--HHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHCCCceEEeCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhhccHH
Confidence 9999999999999999999999999999987 899999999999999998 99999999999887665554
|
| >3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-51 Score=342.98 Aligned_cols=216 Identities=20% Similarity=0.238 Sum_probs=190.0
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++||||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|+.||+|.|++++..... ..
T Consensus 11 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~---- 82 (265)
T 3swx_A 11 LRIRRDGYVLVIGLNRPA--KRNAFDKTMLEELALALGEYETDTDLR-AAVLYGEGPLFTAGLDLASVAAEIQ-GG---- 82 (265)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCSBCCBCHHHHHHHHC-------
T ss_pred EEEEEECCEEEEEECCCc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCCcccCcChHHHhhccc-ch----
Confidence 678899999999999997 889999999999999999999999999 9999999999999999998865211 00
Q ss_pred HHHHHHHHHHHHHHH-hcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 82 LHYMVESFRPVVAAM-MDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l-~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
...+...+.+++.++ .++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +++|++++|
T Consensus 83 ~~~~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG- 159 (265)
T 3swx_A 83 ASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADET-ATFAQLEVNRGI-YPFGGATIRFPRTAG- 159 (265)
T ss_dssp CCCCCTTCCCTTCCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECGGGGGTS-CCCSSHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCC-CEEECccccccc-CCCccHHHHHHHHhh-
Confidence 001112233456677 8999999999999999999999999999999998 899999999999 78776 568999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhc
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLG 231 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~ 231 (243)
..++++++++|+.++|+||+++||||+|+|+ +++.+++.++|++++..| +.++..+|+.++......++
T Consensus 160 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~~~~~ 228 (265)
T 3swx_A 160 WGNAMRWMLTADTFDAVEAHRIGIVQEIVPV-GEHVDTAIAIAQTIARQA--PLGVQATLRNARLAVREGDA 228 (265)
T ss_dssp HHHHHHHHTTCCCEEHHHHHHTTSCSEEEST-TCHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHcCCcCCHHHHHHcCCCCEecCh-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhcCCHH
Confidence 9999999999999999999999999999998 889999999999999998 99999999999876554433
|
| >3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-49 Score=339.96 Aligned_cols=213 Identities=19% Similarity=0.287 Sum_probs=185.0
Q ss_pred ceeeEe-CcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchH
Q 026127 2 CTLEKH-GDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGAR 79 (243)
Q Consensus 2 ~~~~~~-~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~ 79 (243)
+.++++ ++|++||||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.| ++||+|.|++++..... . .
T Consensus 29 v~~~~~~~~va~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~G~~~FcaG~Dl~~~~~~~~-~--~ 102 (289)
T 3t89_A 29 IRYEKSTDGIAKITINRPQ--VRNAFRPLTVKEMIQALADARYDDNIG-VIILTGAGDKAFCSGGDQKVRGDYGG-Y--K 102 (289)
T ss_dssp EEEEEETTSEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSSEEECCBCCC------------
T ss_pred EEEEEecCCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEEcCCCCCccCCCChhhhhcccc-c--h
Confidence 567888 999999999997 789999999999999999999999999 99999999 59999999998754211 0 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCC
Q 026127 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGS 159 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~ 159 (243)
.........+.+++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+.+|++|+++|++++|
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl~~~~~g~~~L~r~vG- 180 (289)
T 3t89_A 103 DDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADN-AIFGQTGPKVGSFDGGWGASYMARIVG- 180 (289)
T ss_dssp -------CTHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCHHHHTCCCCSTTTHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEeCC-CEEeccccccCCCCCchHHHHHHHhcC-
Confidence 111122234677889999999999999999999999999999999999988 899999999997456667889999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
..++++++++|+.++|+||+++||||+|+++ +++.+++.++|++|+..| +.+++.+|+.++..
T Consensus 181 ~~~A~~llltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~A~~la~~~--~~a~~~~K~~l~~~ 243 (289)
T 3t89_A 181 QKKAREIWFLCRQYDAKQALDMGLVNTVVPL-ADLEKETVRWCREMLQNS--PMALRCLKAALNAD 243 (289)
T ss_dssp HHHHHHHHHHCCCEEHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCcccHHHHHHCCCceEeeCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998 899999999999999998 99999999999765
|
| >3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=341.33 Aligned_cols=209 Identities=23% Similarity=0.282 Sum_probs=185.9
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|+.||+|.|++++..... .. ..
T Consensus 13 v~~~~~~~va~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~-~~- 86 (262)
T 3r9q_A 13 VRVEKAGPVTTVILNRPH--ARNAVDGPTAAALLAAFTEFDADPEAS-VAVLWGDNGTFCAGADLKAMGTDRG-NE-LH- 86 (262)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCSBCCBCTTTTTSTTS-CC-CC-
T ss_pred EEEEEECCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCccCCcCHHHHhccCh-hh-HH-
Confidence 678899999999999997 889999999999999999999999999 9999999999999999998765321 00 00
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
......++..+.++||||||+|||+|+|+|++|+++||+|||+++ ++|++||+++|+ +|++| +++|++++| .
T Consensus 87 ----~~~~~~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG-~ 159 (262)
T 3r9q_A 87 ----PHGPGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEED-AVLGVFCRRWGV-PLIDGGTIRLPRLIG-H 159 (262)
T ss_dssp ----TTSSCTTSSTTCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECTHHHHTC-CCCSSHHHHHHHHHC-H
T ss_pred ----HhhhhHHHHHHHhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCC-CEEecchhccCC-CCCccHHHHHHHHhC-H
Confidence 011223444567999999999999999999999999999999998 899999999999 67776 579999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
.++++++++|+.++|+||+++||||+|+|+ +++.+++.++|++|+..| +.+++.+|+.++...
T Consensus 160 ~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~~ 222 (262)
T 3r9q_A 160 SRAMDLILTGRPVHANEALDIGLVNRVVAR-GQAREAAETLAAEIAAFP--QQCVRADRDSAIAQW 222 (262)
T ss_dssp HHHHHHHHHCCCEEHHHHHHTTSCSEEECT-TCHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCcCCHHHHHHcCCccEecCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhh
Confidence 999999999999999999999999999998 889999999999999998 999999999997654
|
| >2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-50 Score=333.72 Aligned_cols=209 Identities=19% Similarity=0.338 Sum_probs=188.1
Q ss_pred eeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHH
Q 026127 3 TLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERL 82 (243)
Q Consensus 3 ~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 82 (243)
.++++++|++|+||||+ +.|++|.+|+++|.+++++++.|+++| +||+||.|+.||+|.|++++..... . ..
T Consensus 6 ~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~---~~- 77 (243)
T 2q35_A 6 LTELGNGVVQITMKDES--SRNGFSPSIVEGLRHCFSVVAQNQQYK-VVILTGYGNYFSSGASKEFLIRKTR-G---EV- 77 (243)
T ss_dssp EEEEETTEEEEEECCGG--GTSBSCHHHHHHHHHHHHHHHHCTTCC-EEEEECBTTEEECBSCHHHHHHHHT-T---CC-
T ss_pred EEEeeCCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCeeCCCChHHHhhccc-h---hh-
Confidence 46788999999999997 899999999999999999999999999 9999999999999999998754211 0 00
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCHH
Q 026127 83 HYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSAT 161 (243)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~ 161 (243)
..++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| ..
T Consensus 78 -----~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-~~ 149 (243)
T 2q35_A 78 -----EVLDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQE-SVYATNFMKYGF-TPVGATSLILREKLG-SE 149 (243)
T ss_dssp -----CCCCCHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEESS-SEEECCHHHHTS-CCCSSHHHHHHHHHC-HH
T ss_pred -----HHHHHHHHHHhCCCCEEEEEcCccccchHHHHHhCCEEEEeCC-CEEECCccccCC-CCcchHHHHHHHHhC-HH
Confidence 1245778899999999999999999999999999999999998 899999999999 78776 569999999 99
Q ss_pred HHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHh
Q 026127 162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVL 230 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l 230 (243)
++++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.+++.+|+.++......+
T Consensus 150 ~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~~ 215 (243)
T 2q35_A 150 LAQEMIYTGENYRGKELAERGIPFPVVSR-QDVLNYAQQLGQKIAKSP--RLSLVALKQHLSADIKAKF 215 (243)
T ss_dssp HHHHHHHHCCCEEHHHHHHTTCSSCEECH-HHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHcCCCCEecCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhhcCH
Confidence 99999999999999999999999999987 899999999999999998 8999999999987654443
|
| >3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-49 Score=336.00 Aligned_cols=209 Identities=17% Similarity=0.205 Sum_probs=185.2
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++||||||+ +.|++|.+|+.+|.+++++++.| ++| +||+||.|+.||+|.|++++....... ..
T Consensus 9 i~~~~~~~v~~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d-~vr-~vVltg~g~~F~aG~Dl~~~~~~~~~~---~~ 81 (267)
T 3hp0_A 9 IKVRFQASVCYITFHRPE--ANNTINDTLIEECLQVLNQCETS-TVT-VVVLEGLPEVFCFGADFQEIYQEMKRG---RK 81 (267)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCBCSHHHHHHHHHHHHHHHS-SCC-EEEEECCSSCSBCCBCHHHHHHTTTTT---CC
T ss_pred EEEEEECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHhcC-CCE-EEEEECCCCceecCcCHHHHHhcccCh---HH
Confidence 678899999999999997 88999999999999999999986 699 999999999999999999987632100 00
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSAT 161 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~ 161 (243)
...+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+.+|++++| ..
T Consensus 82 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~l~r~vG-~~ 158 (267)
T 3hp0_A 82 QASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQT-ASFSLSELLFGL-YPACVLPFLIRRIG-RQ 158 (267)
T ss_dssp SCCCCHHHHHHHHHHHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTT-CEEECCGGGGTC-CCTTTHHHHHHHHC-HH
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCC-CEEECchhccCc-CchhHHHHHHHHhC-HH
Confidence 1122345677889999999999999999999999999999999999998 899999999999 79988889999999 99
Q ss_pred HHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
++++++++|++++|+||+++||||+|+++.+ +.+.+++++++..| +.+++.+|+.++..
T Consensus 159 ~A~ellltg~~i~A~eA~~~GLV~~vv~~~~---~~~~~~a~~la~~~--p~a~~~~K~~l~~~ 217 (267)
T 3hp0_A 159 KAHYMTLMTKPISVQEASEWGLIDAFDAESD---VLLRKHLLRLRRLN--KKGIAHYKQFMSSL 217 (267)
T ss_dssp HHHHHHHHCCCBCHHHHHHHTSSSCBCSCTT---HHHHHHHHHHTTSC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHCCCcceecCCHH---HHHHHHHHHHHhCC--HHHHHHHHHHHHhc
Confidence 9999999999999999999999999998633 34778999999998 99999999998754
|
| >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-49 Score=335.06 Aligned_cols=216 Identities=15% Similarity=0.225 Sum_probs=193.3
Q ss_pred ceeeEeC-cEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHG-DVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~-~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.+++++ +|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||++|.|+.||+|.|++++.... . ..
T Consensus 25 i~~~~~~~~Va~ItLnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~~---~-~~ 97 (263)
T 2j5g_A 25 LHFHRDENGILEVRMHTNG--SSLVFTGKTHREFPDAFYDISRDRDNR-VVILTGSGDAWMAEIDFPSLGDVT---N-PR 97 (263)
T ss_dssp EEEEECTTCEEEEEECBTT--BSCEECHHHHHHHHHHHHHHHHCTTCC-EEEEECBTTEEECEECSGGGCCTT---S-HH
T ss_pred EEEEEcCCCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEECCCCCcccCcCHHHHhccC---C-HH
Confidence 5678888 99999999997 899999999999999999999999999 999999999999999999875321 1 22
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeec-cccccCcCCChhh-HHHHHHHhC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYM-SEVDIGLTLPDYF-AALFRAKVG 158 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~-pe~~~Gl~~p~~g-~~~l~~~~g 158 (243)
....+...+++++.++.++||||||+|||+|+ ||++|+++||+||++++ ++|++ ||+++|+ +|++| ++++++++|
T Consensus 98 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~-a~f~~~pe~~lGl-~p~~g~~~~L~r~vG 174 (263)
T 2j5g_A 98 EWDKTYWEGKKVLQNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASEN-TVFQDMPHLNAGI-VPGDGVHILWPLALG 174 (263)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETT-CEECCCHHHHHTC-CCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCC-CEEecCccccccc-CCCccHHHHHHHHcC
Confidence 23334455678899999999999999999999 59999999999999998 89999 9999999 68776 569999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhc
Q 026127 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLG 231 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~ 231 (243)
..++++++++|+.++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++......++
T Consensus 175 -~~~A~~llltG~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~ 243 (263)
T 2j5g_A 175 -LYRGRYFLFTQEKLTAQQAYELNVVHEVLPQ-SKLMERAWEIARTLAKQP--TLNLRYTRVALTQRLKRLVN 243 (263)
T ss_dssp -HHHHHHHHHTTCCEEHHHHHHTTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHcCCCCCHHHHHHCCCccEecCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhhccHH
Confidence 9999999999999999999999999999998 899999999999999998 99999999999877655544
|
| >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-49 Score=344.02 Aligned_cols=215 Identities=20% Similarity=0.254 Sum_probs=187.0
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcch---
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGA--- 78 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~--- 78 (243)
|.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|++|| +|||||.|+.||+|.|++++.........
T Consensus 37 i~~e~~~~Va~ItLnrP~--~~NAl~~~m~~eL~~al~~~~~d~~vr-vvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~ 113 (333)
T 3njd_A 37 MTYEVTDRVARITFNRPE--KGNAIVADTPLELSALVERADLDPDVH-VILVSGRGEGFCAGFDLSAYAEGSSSAGGGSP 113 (333)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCBCTHHHHHHHHHHHHHHHCTTCC-EEEEEESTTSSBCCBC---------------C
T ss_pred EEEEEECCEEEEEeCCCC--ccCCCCHHHHHHHHHHHHHHhhCCCcE-EEEEECCCCceecCcCHHHHhhcccccccccc
Confidence 678899999999999997 899999999999999999999999999 99999999999999999987653210000
Q ss_pred ----------------------HHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeec
Q 026127 79 ----------------------RERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYM 136 (243)
Q Consensus 79 ----------------------~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~ 136 (243)
......+...+++++.+|.++||||||+|||+|+|||++|+++||+|||+++ ++|++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~-a~f~~ 192 (333)
T 3njd_A 114 YEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAAD-AKIGY 192 (333)
T ss_dssp CTTSTTCHHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTT-CEEEC
T ss_pred cccccccccccccccccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECCC-Ceeec
Confidence 0022345566778889999999999999999999999999999999999998 89999
Q ss_pred cccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHH
Q 026127 137 SEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYA 216 (243)
Q Consensus 137 pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~ 216 (243)
||+++|+ +|++| ++++++| ..++++|+++|+.|+|+||+++||||+|+|+ +++.+++.++|++|+..| +.++.
T Consensus 193 pe~~lG~-~P~~g--~l~~~vG-~~~A~ellltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~lA~~ia~~~--~~al~ 265 (333)
T 3njd_A 193 PPMRVWG-VPAAG--LWAHRLG-DQRAKRLLFTGDCITGAQAAEWGLAVEAPDP-ADLDARTERLVERIAAMP--VNQLI 265 (333)
T ss_dssp GGGGTTC-CCTTC--CHHHHHC-HHHHHHHHTTCCEEEHHHHHHTTSSSBCCCG-GGHHHHHHHHHHHHHTSC--HHHHH
T ss_pred hhhceec-cCHHH--HHHHHHH-HHHHHHHHhcCCCCCHHHHHHCCCccEecCh-HHHHHHHHHHHHHHHcCC--HHHHH
Confidence 9999999 78876 5889999 9999999999999999999999999999998 899999999999999998 99999
Q ss_pred HHHHHHhHHHH
Q 026127 217 EIRKSLCPDLC 227 (243)
Q Consensus 217 ~~k~~l~~~~~ 227 (243)
.+|+.++..+.
T Consensus 266 ~~K~~l~~~~~ 276 (333)
T 3njd_A 266 MAKLACNTALL 276 (333)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987654
|
| >4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-50 Score=341.68 Aligned_cols=211 Identities=21% Similarity=0.270 Sum_probs=176.9
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.++++++++|+++| +||+||.|+.||+|.|++++..... ...
T Consensus 22 v~~~~~~~v~~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~----~~~ 94 (278)
T 4f47_A 22 ALVEQRGHTLIVTMNRPS--RRNALSGEMMQIMVEAWDRVDNDPDIR-CCILTGAGGYFCAGMDLKAATKKPP----GDS 94 (278)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCCCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCCC--------------------
T ss_pred eEEEEECCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhcCCCee-EEEEECCCCcccCCcChHhhhccch----hhh
Confidence 678899999999999997 899999999999999999999999999 9999999999999999998865311 111
Q ss_pred HHHHHHHHHHHHHHHh---cCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHh
Q 026127 82 LHYMVESFRPVVAAMM---DLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKV 157 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~---~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~ 157 (243)
.. .......++..+. ++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++
T Consensus 95 ~~-~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~v 171 (278)
T 4f47_A 95 FK-DGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAES-AKFGISEAKWSL-YPMGGSAVRLVRQI 171 (278)
T ss_dssp -------CTTCBTTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETT-CEEECCGGGGTC-CCTTSHHHHHHHHS
T ss_pred HH-HHHHHHHHHHHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCC-CEEECcccccCC-CCCccHHHHHHHHh
Confidence 11 1112344556666 999999999999999999999999999999998 899999999999 78776 67999999
Q ss_pred CCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
| ..++++++++|+.++|+||+++||||+|+|+ +++.+++.++|++++..| +.++..+|+.++...
T Consensus 172 G-~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 236 (278)
T 4f47_A 172 P-YTVACDLLLTGRHITAAEAKEMGLVGHVVPD-GQALTKALEIAEIIAANG--PLAVQAILRTIRETE 236 (278)
T ss_dssp C-HHHHHHHHHHCCCEEHHHHHHTTSCSEEECT-TCHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHTT
T ss_pred C-HHHHHHHHHcCCcCCHHHHHHCCCceEeeCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhc
Confidence 9 9999999999999999999999999999998 889999999999999998 999999999997653
|
| >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-49 Score=328.73 Aligned_cols=207 Identities=19% Similarity=0.268 Sum_probs=188.0
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++. +++| +||+||.|+.||+|.|++++... . ...
T Consensus 9 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~-~~vr-~vVltg~g~~F~aG~Dl~~~~~~----~-~~~ 79 (254)
T 3isa_A 9 LAIERRPAAWTFTLSRPE--KRNALSAELVEALIDGVDAAHR-EQVP-LLVFAGAGRNFSAGFDFTDYETQ----S-EGD 79 (254)
T ss_dssp EEEEECSSEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHH-TTCS-EEEEEESTTCSCCCBCCTTCTTS----C-HHH
T ss_pred EEEEEECCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHhhc-CCcE-EEEEECCCCceeeCcChHHhhcc----C-chh
Confidence 578889999999999997 8999999999999999999987 5899 99999999999999999987642 1 222
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSAT 161 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~ 161 (243)
.......+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +| |+++|++++| ..
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p--g~~~l~~~vG-~~ 154 (254)
T 3isa_A 80 LLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPE-AGFRMPGLKFGL-VL--GTRRFRDIVG-AD 154 (254)
T ss_dssp HHHHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTT-CEEECCGGGGTC-CC--SHHHHHHHHC-HH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCC-CEEECchhccCc-cH--HHHHHHHHcC-HH
Confidence 2334455788999999999999999999999999999999999999998 899999999999 67 5789999999 99
Q ss_pred HHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
++++++++|+.++|+||+++||||+|+|+ +++.+++.+++++++..| +.+++.+|+.+...
T Consensus 155 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 215 (254)
T 3isa_A 155 QALSILGSARAFDADEARRIGFVRDCAAQ-AQWPALIDAAAEAATALD--PATRATLHRVLRDD 215 (254)
T ss_dssp HHHHHHTTTCEEEHHHHHHTTSSSEECCG-GGHHHHHHHHHHHHTTSC--HHHHHHHHHHHSCC
T ss_pred HHHHHHHhCCCCcHHHHHHCCCccEEeCh-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhh
Confidence 99999999999999999999999999998 899999999999999998 99999999998543
|
| >3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-50 Score=343.57 Aligned_cols=216 Identities=18% Similarity=0.238 Sum_probs=183.5
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcc--hH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTG--AR 79 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~--~~ 79 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|++||+|.|++++........ ..
T Consensus 13 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 89 (274)
T 3tlf_A 13 IKYEVDGHTATITLNRPD--ALNALSPHMITELRAAYHEAENDDRVW-LLVVTGTGRAFCSGADVKEIPEDGKVIYERPY 89 (274)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTEEECCBC--------------CT
T ss_pred eEEEEECCEEEEEECCcc--ccCCCCHHHHHHHHHHHHHHhcCCCeE-EEEEeCCCCCcccCcCHHHHhhccccccccch
Confidence 678899999999999997 799999999999999999999999999 9999999999999999998765211000 00
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCC
Q 026127 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGS 159 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~ 159 (243)
.........+++++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+ +|.+++++|++++|
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~g~~~~L~r~vG- 166 (274)
T 3tlf_A 90 LSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQ-ATFFDPHVSIGL-VAGRELVRVSRVLP- 166 (274)
T ss_dssp TCSGGGGSCCCTTCCCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETT-CEEECCGGGGTC-CCCHHHHHHTTTSC-
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC-CEEECcccccCc-ccchHHHHHHHHhC-
Confidence 000111123456778899999999999999999999999999999999998 899999999999 78444679999999
Q ss_pred HHHHHHHHhcCc--CCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 160 ATARRDVLLRAK--KIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~--~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
..++++++++|+ .++|+||+++||||+|+|+ +++.+++.++|++++..| +.+++.+|+.++...
T Consensus 167 ~~~A~~l~ltg~~~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 232 (274)
T 3tlf_A 167 RSIALRMALMGKHERMSAQRAYELGLISEIVEH-DRLLERAHEIADIVNSNA--PLAVRGTRLAILKGL 232 (274)
T ss_dssp HHHHHHHHHHGGGCCEEHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCccCHHHHHHCCCCCeecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence 999999999999 9999999999999999998 899999999999999998 999999999997653
|
| >3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=341.97 Aligned_cols=215 Identities=25% Similarity=0.329 Sum_probs=191.6
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|+.||+|.|++++..... .....
T Consensus 9 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~- 83 (265)
T 3qxz_A 9 LHEEIRDGVAVLTLHGPS--TRNSFTVELGRQLGAAYQRLDDDPAVR-VIVLTGAPPAFCSGAQISAAAETFA-APRNP- 83 (265)
T ss_dssp EEEEEETTEEEEEEECGG--GTSCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTEEECCBCSTTCTTCCC-CCCSS-
T ss_pred EEEEEECCEEEEEEcCCc--cCCCCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCccccCcChHHHhhccc-hhHHH-
Confidence 568889999999999997 889999999999999999999999999 9999999999999999998765321 11011
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
.... ++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus 84 ---~~~~-~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG-~ 156 (265)
T 3qxz_A 84 ---DFSA-SPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEE-GRYAIPQVRFGV-APDALAHWTLPRLVG-T 156 (265)
T ss_dssp ---CCCS-CCSSSCGGGSSSCEEEEECSEEETHHHHHHTTSSEEEEETT-CCEECCGGGGTS-CCCTTHHHHTHHHHH-H
T ss_pred ---HHHH-HHHHHHHHhCCCCEEEEECCEEehHhHHHHHHCCEEEEcCC-CEEECcccccCc-CCCccHHHHHHHHhC-H
Confidence 1122 56778899999999999999999999999999999999998 899999999999 68776 569999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcC-CCChhHHHHHHHHHhHHHHHHhc
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR-KWAGEVYAEIRKSLCPDLCGVLG 231 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~-~~~~~a~~~~k~~l~~~~~~~l~ 231 (243)
.++++++++|+.++|+||+++||||+|+|+ +++.+++.++|++++.. | +.++..+|+.++......++
T Consensus 157 ~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~~--p~a~~~~K~~l~~~~~~~l~ 225 (265)
T 3qxz_A 157 AVAAELLLTGASFSAQRAVETGLANRCLPA-GKVLGAALRMAHDIATNVA--PESAALTKRLLWDAQMTGMS 225 (265)
T ss_dssp HHHHHHHHHCCCBCHHHHHHHTSCSEEECH-HHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCCcCHHHHHHCCCccEeeCH-HHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHhhcCCHH
Confidence 999999999999999999999999999997 89999999999999998 8 99999999999877655543
|
| >1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-49 Score=334.08 Aligned_cols=208 Identities=21% Similarity=0.294 Sum_probs=184.1
Q ss_pred ceeeE---eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcch
Q 026127 2 CTLEK---HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGA 78 (243)
Q Consensus 2 ~~~~~---~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~ 78 (243)
+.++. .++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|+.||+|.|++++... ..
T Consensus 6 ~~~~~~v~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~---~~- 78 (260)
T 1mj3_A 6 IITEKKGKNSSVGLIQLNRPK--ALNALCNGLIEELNQALETFEEDPAVG-AIVLTGGEKAFAAGADIKEMQNR---TF- 78 (260)
T ss_dssp EEEEEESGGGCEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEECCSSEEECCBCHHHHTTC---CH-
T ss_pred ceeecccCcCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHHhCCCee-EEEEECCCCCccCCcChHhhhcc---cc-
Confidence 34555 6789999999997 899999999999999999999999999 99999999999999999987531 11
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHh
Q 026127 79 RERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKV 157 (243)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~ 157 (243)
.. .+...+.+.+.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++
T Consensus 79 ~~---~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~v 153 (260)
T 1mj3_A 79 QD---CYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEK-AQFGQPEILLGT-IPGAGGTQRLTRAV 153 (260)
T ss_dssp HH---HHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECGGGGGTC-CCCSSTTTHHHHHH
T ss_pred hH---HHHHHHHHHHHHHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCC-CEEeCcccccCC-CCCccHHHHHHHHh
Confidence 11 12222333467888999999999999999999999999999999988 899999999999 78776 56999999
Q ss_pred CCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
| ..++++++++|+.++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++..
T Consensus 154 G-~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 217 (260)
T 1mj3_A 154 G-KSLAMEMVLTGDRISAQDAKQAGLVSKIFPV-ETLVEEAIQCAEKIANNS--KIIVAMAKESVNAA 217 (260)
T ss_dssp C-HHHHHHHHHHCCCEEHHHHHHHTSCSEEECT-TTHHHHHHHHHHHHHHSC--HHHHHHHHHHHHGG
T ss_pred C-HHHHHHHHHcCCcCCHHHHHHcCCccEEeCh-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHh
Confidence 9 9999999999999999999999999999998 889999999999999998 89999999998754
|
| >4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-48 Score=340.47 Aligned_cols=192 Identities=17% Similarity=0.224 Sum_probs=171.1
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
|.++++|+|++||||||+ +.|++|.+|+.+|.++++++++|++|| +|||||.| ++||+|+|++++..... .+..
T Consensus 11 vl~e~~~~Va~itLnrP~--~~NAl~~~m~~~l~~al~~~~~d~~vr-~vvltg~G~~~FcaG~Dl~~~~~~~~--~~~~ 85 (353)
T 4hdt_A 11 VLVNVEGGVGLLTLNRPK--AINSLTHGMVTTMAERLAAWENDDSVR-AVLLTGAGERGLCAGGDVVAIYHSAK--ADGA 85 (353)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHTCTTCC-EEEEEESSSSBSBCCBCHHHHHHHHH--TTSH
T ss_pred EEEEEECCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEEeCCCCCEecCcCHHHHhhccc--hhhH
Confidence 578999999999999997 899999999999999999999999999 99999998 79999999998864321 1134
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhH-HHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFA-ALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~-~~l~~~~g~ 159 (243)
....+....++++..|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+ +++++.+|
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~iGl-~p~~g~~~~l~rl~g- 162 (353)
T 4hdt_A 86 EARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDT-TKMAMPEVGIGF-IPDVGGTYLLSRAPG- 162 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTT-CEEECCGGGGTC-CCCTTHHHHHHTSST-
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEeECceeecCccccCCcCeeccchh-ccccCccccccc-CCCccceehhhhhhh-
Confidence 45567777888999999999999999999999999999999999999998 899999999999 788875 57776666
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAK 203 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~ 203 (243)
..+++|++||++++|+||+++||||+|||+ ++|.+.+.++++
T Consensus 163 -~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~la~ 204 (353)
T 4hdt_A 163 -KLGLHAALTGAPFSGADAIVMGFADHYVPH-DKIDEFTRAVIA 204 (353)
T ss_dssp -THHHHHHHHCCCBCHHHHHHHTSCSEECCG-GGHHHHHHHHHH
T ss_pred -HHHHHHHhcCCCCCHHHHHHcCCCcEEeCH-HHHHHHHHHHHH
Confidence 478999999999999999999999999998 889888877643
|
| >1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-49 Score=335.21 Aligned_cols=211 Identities=17% Similarity=0.295 Sum_probs=187.3
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEec-CC-CcccCCCChhhHHhcCCCcchH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTS-HG-KFFSNGFDLAWAQAAGSRTGAR 79 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g-~g-~~F~~G~Dl~~~~~~~~~~~~~ 79 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+ +| +||+|| .| +.||+|.|++++..... +. .
T Consensus 6 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~-vr-~vVltg~~g~~~F~aG~Dl~~~~~~~~-~~-~ 79 (261)
T 1ef8_A 6 VNVVTINKVAVIEFNYGR--KLNALSKVFIDDLMQALSDLNRPE-IR-CIILRAPSGSKVFSAGHDIHELPSGGR-DP-L 79 (261)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCCCHHHHHHHHHHHHHTCSTT-CC-EEEEECCTTCSEEECCSCSTTC------CT-T
T ss_pred EEEEEeCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhhCC-ce-EEEEECCCCCCeeecCcChHhhhccCc-hh-H
Confidence 678899999999999997 799999999999999999999999 99 999999 88 99999999998754211 00 0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhC
Q 026127 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVG 158 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g 158 (243)
.+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++|
T Consensus 80 ----~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG 153 (261)
T 1ef8_A 80 ----SYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAAST-STFSMTPVNLGV-PYNLVGIHNLTRDAG 153 (261)
T ss_dssp ----CTTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCHHHHTC-CCCHHHHHTTSSSSC
T ss_pred ----HHHHHHHHHHHHHHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCC-CEEeCchhccCC-CCCccHHHHHHHHhC
Confidence 11223567888999999999999999999999999999999999988 899999999999 78876 568999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHH
Q 026127 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCG 228 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~ 228 (243)
..++++++++|+.++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++.....
T Consensus 154 -~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~ 219 (261)
T 1ef8_A 154 -FHIVKELIFTASPITAQRALAVGILNHVVEV-EELEDFTLQMAHHISEKA--PLAIAVIKEELRVLGEA 219 (261)
T ss_dssp -HHHHHHHHHHCCCEEHHHHHHTTSCSEEECH-HHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHcCCccCHHHHHHCCCcccccCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999987 899999999999999998 89999999999876443
|
| >3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-49 Score=339.58 Aligned_cols=215 Identities=17% Similarity=0.281 Sum_probs=185.1
Q ss_pred ceeeEe--CcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCC-------cccCCCChhhHHhc
Q 026127 2 CTLEKH--GDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGK-------FFSNGFDLAWAQAA 72 (243)
Q Consensus 2 ~~~~~~--~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~-------~F~~G~Dl~~~~~~ 72 (243)
|.++++ ++|++|+||||+ +.|++|.+|+.+|.++++.++.|++|| +|||||.|+ .||+|.|++++...
T Consensus 57 i~~~~~~~~gVa~ItlnrP~--~~NAl~~~~~~eL~~al~~~~~d~~vr-vVVltG~G~~~~~~~~~FcaG~Dl~~~~~~ 133 (334)
T 3t8b_A 57 ITYHRHVDDATVRVAFNRPE--VRNAFRPHTVDELYRVLDHARMSPDVG-VVLLTGNGPSPKDGGWAFCSGGDQRIRGRS 133 (334)
T ss_dssp EEEEEESSSSEEEEEECCGG--GTTCCCHHHHHHHHHHHHHHHHCTTCC-EEEEEECCCCTTTCCCEEECCSCTTTTC--
T ss_pred EEEEEeccCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEeCCCCCcCCCCCcccCCCCHHHhhcc
Confidence 556665 899999999997 889999999999999999999999999 999999995 89999999876421
Q ss_pred CC--Ccc----hHHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEe-cCCceeeccccccCcCC
Q 026127 73 GS--RTG----ARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMR-RDKGVLYMSEVDIGLTL 145 (243)
Q Consensus 73 ~~--~~~----~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~-~~~~~f~~pe~~~Gl~~ 145 (243)
.. ... ...........+.+++.+|.++||||||+|||+|+|||++|+++||+|||+ ++ ++|++||+++|+ +
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~-A~f~~pe~~lGl-~ 211 (334)
T 3t8b_A 134 GYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREY-ARFKQTDADVGS-F 211 (334)
T ss_dssp --------------------CCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTT-CEEECCCTTCSS-S
T ss_pred cccccccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeCCC-cEEECcccccCC-C
Confidence 00 000 001111122345678889999999999999999999999999999999999 87 899999999999 6
Q ss_pred Chhh-HHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 026127 146 PDYF-AALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCP 224 (243)
Q Consensus 146 p~~g-~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~ 224 (243)
|++| +++|++++| ..++++++++|+.++|+||+++||||+|||+ +++.+++.++|++|+..| +.+++.+|+.++.
T Consensus 212 p~~gg~~~L~r~vG-~~~A~ellltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~A~~ia~~~--p~a~~~~K~~l~~ 287 (334)
T 3t8b_A 212 DGGYGSAYLARQVG-QKFAREIFFLGRTYTAEQMHQMGAVNAVAEH-AELETVGLQWAAEINAKS--PQAQRMLKFAFNL 287 (334)
T ss_dssp SCCSCHHHHHHHHH-HHHHHHHHHHCCEEEHHHHHHHTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHhh-HHHHHHHHHhCCcCCHHHHHHCCCCcEecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHh
Confidence 7765 789999999 9999999999999999999999999999998 899999999999999998 9999999999876
Q ss_pred H
Q 026127 225 D 225 (243)
Q Consensus 225 ~ 225 (243)
.
T Consensus 288 ~ 288 (334)
T 3t8b_A 288 L 288 (334)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-49 Score=334.90 Aligned_cols=209 Identities=18% Similarity=0.311 Sum_probs=182.6
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCC-cccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGK-FFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~-~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|+ +||+|.|++++..... .. ..
T Consensus 15 i~~~~~~~va~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~~FcaG~Dl~~~~~~~~-~~-~~ 89 (273)
T 2uzf_A 15 IKYEFYEGIAKVTINRPE--VRNAFTPKTVAEMIDAFSRARDDQNVS-VIVLTGEGDLAFCSGGDQKKRGHGGY-VG-ED 89 (273)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCCCHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSEEEECCCCCC---------C-CS
T ss_pred EEEEEECCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEecCCCCceecCcCcHhhhcccc-ch-hh
Confidence 567889999999999997 899999999999999999999999999 999999998 9999999998753110 00 00
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
... ...+++++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++|
T Consensus 90 ~~~--~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG- 164 (273)
T 2uzf_A 90 QIP--RLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADN-AIFGQTGPKVGS-FDAGYGSGYLARIVG- 164 (273)
T ss_dssp SSC--CCTHHHHHHHHHHSSSCEEEEECEEEETHHHHHHHHSSEEEEETT-CEEECCGGGTTC-CCCSTTTHHHHHHHC-
T ss_pred hHH--HhhHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEEcCC-CEEECchhhhCC-CCchhHHHHHHHHhC-
Confidence 000 011456778889999999999999999999999999999999988 899999999999 68776 679999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHh
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLC 223 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~ 223 (243)
..++++++++|+.++|+||+++||||+|+++ +++.+++.++|++++..| +.++..+|+.++
T Consensus 165 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~ 225 (273)
T 2uzf_A 165 HKKAREIWYLCRQYNAQEALDMGLVNTVVPL-EKVEDETVQWCKEIMKHS--PTALRFLKAAMN 225 (273)
T ss_dssp HHHHHHHHHTCCCEEHHHHHHHTSSSEEECG-GGSHHHHHHHHHHHTTSC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHcCCCccccCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHH
Confidence 9999999999999999999999999999997 889999999999999998 899999999987
|
| >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-48 Score=332.83 Aligned_cols=211 Identities=19% Similarity=0.254 Sum_probs=188.2
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCC-cccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGK-FFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~-~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|+|||| +.|++|.+|+.+|.+++++++.|++|| +||+||.|+ +||.|.|++++.... ..
T Consensus 10 v~~~~~~~Va~itlnrP---~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~G~~ff~~G~Dl~~~~~~~-----~~ 80 (289)
T 3h0u_A 10 IKARLDGTVLSATFNAP---PMNLIGPEVVRDLVALLEELAHPTAPR-VVIFDSADADFFFPHVDMTKVPEYT-----AE 80 (289)
T ss_dssp EEEEEETTEEEEEECCT---TTCCBCHHHHHHHHHHHHHTTSTTSCS-EEEEEECSSSEEECSBCTTCHHHHH-----HH
T ss_pred EEEEEECCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCceeCCcCHHHHhhcC-----cc
Confidence 67889999999999999 679999999999999999999999999 999999985 566677999876521 11
Q ss_pred HHH---HHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHH
Q 026127 81 RLH---YMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAK 156 (243)
Q Consensus 81 ~~~---~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~ 156 (243)
... .+...+++++.++.++||||||+|||+|+|||++|+++||+|||++++++|++||+++|+ +|++| +++|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl-~p~~g~~~~L~r~ 159 (289)
T 3h0u_A 81 AAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGA-PPGAGAIQHLTRL 159 (289)
T ss_dssp HHTTSSTTCCSHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTS-CCCSSHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCC-CCCccHHHHHHHH
Confidence 111 234467889999999999999999999999999999999999999864789999999999 68776 5799999
Q ss_pred hCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 157 VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
+| ..++++++++|++++|+||+++||||+|+|+ +++.+++.++|++|+..| |.++..+|+.++...
T Consensus 160 vG-~~~A~ellltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~lA~~la~~~--p~a~~~~K~~l~~~~ 225 (289)
T 3h0u_A 160 LG-RGRALEAVLTSSDFDADLAERYGWVNRAVPD-AELDEFVAGIAARMSGFP--RDALIAAKSAINAIS 225 (289)
T ss_dssp HC-HHHHHHHHHHCCCEEHHHHHHHTSSSEEECH-HHHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHH
T ss_pred hC-HHHHHHHHHcCCCCCHHHHHHCCCccEecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhc
Confidence 99 9999999999999999999999999999997 899999999999999998 999999999998654
|
| >3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-49 Score=333.51 Aligned_cols=205 Identities=20% Similarity=0.273 Sum_probs=183.6
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|+.||+|.|++++..... .. ..
T Consensus 9 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~-~~- 82 (256)
T 3trr_A 9 VLIEQRDRVLLITINRPD--ARNAVNRAVSQGLAAAADQLDSSADLS-VAIITGAGGNFCAGMDLKAFVSGEA-VL-SE- 82 (256)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEEGGGCCCCCBCHHHHHHTCC-CE-ET-
T ss_pred eEEEEECCEEEEEEcCCC--cCCCCCHHHHHHHHHHHHHHhcCCCeE-EEEEECCCCceecCcCHHHhccccc-hh-hh-
Confidence 678899999999999997 889999999999999999999999999 9999999999999999999876321 11 00
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
.. + . +..+ ++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus 83 -~~----~-~-~~~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG-~ 151 (256)
T 3trr_A 83 -RG----L-G-FTNV-PPRKPIIAAVEGFALAGGTELVLSCDLVVAGRS-AKFGIPEVKRGL-VAGAGGLLRLPNRIP-Y 151 (256)
T ss_dssp -TE----E-T-TSSS-CCSSCEEEEECSBCCTHHHHHHHTSSEEEEETT-CEECCCGGGGTC-CCCSSHHHHHHHHSC-H
T ss_pred -hh----h-h-HHHh-cCCCCEEEEECCeeeechhHHHHhCCEEEECCC-CEEEehhhccCC-CCCccHHHHHHHHhC-H
Confidence 00 1 1 2334 899999999999999999999999999999998 899999999999 67776 579999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
.++++++++|+.++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.++...
T Consensus 152 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 214 (256)
T 3trr_A 152 QVAMELALTGESFTAEDAAKYGFINRLVDD-GQALDTALELAAKITANG--PLAVAATKRIIIESA 214 (256)
T ss_dssp HHHHHHHHHCCCEEHHHHGGGTCCSEEECT-TCHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHGG
T ss_pred HHHHHHHHhCCCcCHHHHHHCCCeeEecCh-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhh
Confidence 999999999999999999999999999998 889999999999999998 999999999997654
|
| >3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-49 Score=331.99 Aligned_cols=207 Identities=19% Similarity=0.274 Sum_probs=178.6
Q ss_pred CceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
.+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.|+.||+|.|++++..... .....
T Consensus 16 ~v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~ 91 (265)
T 3qxi_A 16 EVLVEQRDRILIITINRPK--AKNSVNAAVSRALADAMDRLDADAGLS-VGILTGAGGSFCAGMDLKAFARGEN-VVVEG 91 (265)
T ss_dssp CEEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCCCCSBC-------CC-CEETT
T ss_pred eEEEEEECCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEECCCCCeeCCCChhhhhccch-hhhhh
Confidence 3678899999999999997 889999999999999999999999999 9999999999999999998765321 11000
Q ss_pred HHHHHHHHHHHH-HHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhC
Q 026127 81 RLHYMVESFRPV-VAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVG 158 (243)
Q Consensus 81 ~~~~~~~~~~~~-~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g 158 (243)
+.+ +..+.. ||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +++|++++|
T Consensus 92 ---------~~~~~~~~~~-~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG 159 (265)
T 3qxi_A 92 ---------RGLGFTERPP-AKPLIAAVEGYALAGGTELALATDLIVAARD-SAFGIPEVKRGL-VAGGGGLLRLPERIP 159 (265)
T ss_dssp ---------TEETTTTSCC-SSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECGGGGGTC-CCCSSHHHHHHHHSC
T ss_pred ---------hhhhHHHhhC-CCCEEEEECCceeHHHHHHHHhCCEEEEcCC-CEEECcccccCc-CCcccHHHHHHHHhC
Confidence 111 333444 9999999999999999999999999999998 899999999999 68776 579999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
..++++++++|+.|+|+||+++||||+|+|+ +++.+++.++|++|+..| +.++..+|+.++....
T Consensus 160 -~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~ 224 (265)
T 3qxi_A 160 -YAIAMELALTGDNLSAERAHALGMVNVLAEP-GAALDAAIALAEKITANG--PLAVAATKRIITESRG 224 (265)
T ss_dssp -HHHHHHHHHHCCCEEHHHHHHTTSCSEEECT-TCHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHcCCCcCHHHHHHCCCccEeeCh-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999998 899999999999999998 9999999999986543
|
| >3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-49 Score=332.61 Aligned_cols=209 Identities=20% Similarity=0.232 Sum_probs=182.5
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.| +.||+|.|++++..... .....
T Consensus 11 v~~~~~~~v~~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~~F~aG~Dl~~~~~~~~-~~~~~ 86 (267)
T 3r9t_A 11 ALAERRGNVMVITINRPE--ARNAINAAVSIGVGDALEEAQHDPEVR-AVVLTGAGDKSFCAGADLKAIARREN-LYHPD 86 (267)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSSEEECCBCHHHHHTTCC-CSCTT
T ss_pred EEEEEECCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCceeCCcChHHHhcccc-hhhHH
Confidence 678899999999999997 899999999999999999999999999 99999999 69999999999875322 11010
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
. ..+ ....+ ...++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +++|++++|
T Consensus 87 ~-~~~---~~~~~-~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG- 158 (267)
T 3r9t_A 87 H-PEW---GFAGY-VRHFIDKPTIAAVNGTALGGGTELALASDLVVADER-AQFGLPEVKRGL-IAAAGGVFRIAEQLP- 158 (267)
T ss_dssp C-GGG---CGGGT-TTCCCSSCEEEEECSEECTHHHHHHHHSSEEEEETT-CEECCGGGGTTC-CCTTTHHHHHHHHSC-
T ss_pred H-HhH---HHHHH-HHHhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCC-CEEECcccccCC-CCCccHHHHHHHHcC-
Confidence 0 000 00111 224899999999999999999999999999999998 899999999999 68776 569999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHH---HhHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKS---LCPD 225 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~---l~~~ 225 (243)
..++++++++|+.++|+||+++||||+|+|+ +++.+++.++|++|+..| +.+++.+|+. ++..
T Consensus 159 ~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~~~~l~~~ 224 (267)
T 3r9t_A 159 RKVAMRLLLTGEPLSAAAARDWGLINEVVEA-GSVLDAALALASAITVNA--PLSVQASKRIAYGVDDG 224 (267)
T ss_dssp HHHHHHHHHHCCCEEHHHHHHHTSSSEEECT-TCHHHHHHHHHHHHHTSC--HHHHHHHHHHHTTEETT
T ss_pred HHHHHHHHHcCCCCCHHHHHHCCCccEEcCh-hHHHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998 889999999999999998 9999999999 7643
|
| >3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-48 Score=326.64 Aligned_cols=201 Identities=24% Similarity=0.328 Sum_probs=178.5
Q ss_pred CceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+|.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.| ++| +||+||.|+.||+|.|++.... .
T Consensus 22 ~i~~~~~~~v~~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d-~vr-~vVltg~G~~FcaG~Dl~~~~~-------~- 89 (264)
T 3he2_A 22 MIGITQAEAVLTIELQRPE--RRNALNSQLVEELTQAIRKAGDG-SAR-AIVLTGQGTAFCAGADLSGDAF-------A- 89 (264)
T ss_dssp CEEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHCC----CCS-EEEEEESSSCSBCCBCCTTCTT-------G-
T ss_pred eEEEEEECCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHhhC-Cce-EEEEECCCCCccCCcCCccchh-------h-
Confidence 4778999999999999997 89999999999999999999988 999 9999999999999999983111 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
..+.+.+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++|
T Consensus 90 --~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG- 164 (264)
T 3he2_A 90 --ADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPD-AFFQFPTSKYGL-ALDNWSIRRLSSLVG- 164 (264)
T ss_dssp --GGHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTT-CEEECTHHHHTC-CCCHHHHHHHHHHHC-
T ss_pred --HHHHHHHHHHHHHHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCC-CEEECcccccCc-CCcchHHHHHHHHhC-
Confidence 123445677889999999999999999999999999999999999998 899999999999 67665 679999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
..++++++++|+.++|+||+++||||+|++ .+++.++|++++..| +.+++.+|+.++..
T Consensus 165 ~~~A~~llltG~~i~A~eA~~~GLV~~v~~-----~~~a~~~A~~la~~~--p~a~~~~K~~l~~~ 223 (264)
T 3he2_A 165 HGRARAMLLSAEKLTAEIALHTGMANRIGT-----LADAQAWAAEIARLA--PLAIQHAKRVLNDD 223 (264)
T ss_dssp HHHHHHHHHHCCCEEHHHHHHHTSCSEECC-----HHHHHHHHHHHHTSC--HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCccHHHHHHCCCeEEEec-----HHHHHHHHHHHHcCC--HHHHHHHHHHHHcc
Confidence 999999999999999999999999999986 256899999999998 99999999999865
|
| >3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-48 Score=334.00 Aligned_cols=213 Identities=20% Similarity=0.232 Sum_probs=182.4
Q ss_pred ceeeEeCcEEEEEEcCCCCCC----CCCCCHHHHHHHHHHHHHHHh-----cCCCCeEEEEecCCCcccCCCChhhHHhc
Q 026127 2 CTLEKHGDVFVLTLTGSSDVD----EHRFGPPAIDSILSAIAKAKA-----EATPGSALITTSHGKFFSNGFDLAWAQAA 72 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~----~N~l~~~~~~~l~~~l~~~~~-----d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~ 72 (243)
|.++++++|++|+||+|+ + .|++|.+|+.+|.+++++++. |+++| +||++|.|++||+|.|++++...
T Consensus 34 v~~~~~~~V~~itLnrp~--k~n~~rpal~~~m~~eL~~al~~~~~d~~~~d~~vr-~vVltg~G~~FcaG~Dl~~~~~~ 110 (305)
T 3m6n_A 34 IIEEPQRDVYWIHMHADL--AINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAP-HVVLASDSDVFNLGGDLALFCQL 110 (305)
T ss_dssp EEEETTTTEEEEEECTTC-------CCSBCHHHHHHHHHHHHHHHHHHHHHTCSSC-EEEEEESSSSSBCCBCHHHHHHH
T ss_pred EEEEEECCEEEEEECCcc--ccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCeE-EEEEECCCCCeecCcCHHHHHhc
Confidence 345678999999999997 7 459999999999999999987 48999 99999999999999999988652
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHH---hcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh
Q 026127 73 GSRTGARERLHYMVESFRPVVAAM---MDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF 149 (243)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~l---~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g 149 (243)
.. ..+......+...+.+.+..+ ..+||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+ +|++|
T Consensus 111 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl-~p~~g 187 (305)
T 3m6n_A 111 IR-EGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEG-VMMGLPEVLFDL-FPGMG 187 (305)
T ss_dssp HH-HTCHHHHHHHHHHHHHHHHHHHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETT-CEEECGGGGGTC-CCCSS
T ss_pred cc-cccHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCEeehHHHHHHHhCCEEEEcCC-CEEECchhccCc-CCCcc
Confidence 11 011223334444444555444 5689999999999999999999999999999998 899999999999 78776
Q ss_pred -HHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 026127 150 -AALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPD 225 (243)
Q Consensus 150 -~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~ 225 (243)
+++|++++| ..++++++++|++|+|+||+++|||++|+|+ +++.+++.++|++|+. + |.++..+|+.++..
T Consensus 188 ~~~~L~r~vG-~~~A~~llltG~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~-~--p~a~~~~K~~l~~~ 259 (305)
T 3m6n_A 188 AYSFMCQRIS-AHLAQKIMLEGNLYSAEQLLGMGLVDRVVPR-GQGVAAVEQVIRESKR-T--PHAWAAMQQVREMT 259 (305)
T ss_dssp HHHHHTTTSC-HHHHHHHHHHCCEEEHHHHHHHTSCSEEECT-TCHHHHHHHHHHHHTT-C--HHHHHHHHHHHHTT
T ss_pred HHHHHHHHhc-HHHHHHHHHcCCCCCHHHHHHCCCCCEecCh-hHHHHHHHHHHHHHhh-C--hHHHHHHHHHHHhh
Confidence 579999999 9999999999999999999999999999998 8999999999999986 5 88999999998754
|
| >1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-48 Score=326.63 Aligned_cols=206 Identities=19% Similarity=0.342 Sum_probs=184.8
Q ss_pred eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchHHHHHHH
Q 026127 7 HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGARERLHYM 85 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 85 (243)
+++|++|+||||+ +.|++|.+|+.+|.+++++++.|+++| +||+||.| ++||+|.|++++... . ......+
T Consensus 19 ~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~~F~aG~Dl~~~~~~----~-~~~~~~~ 90 (272)
T 1hzd_A 19 NRGIVVLGINRAY--GKNSLSKNLIKMLSKAVDALKSDKKVR-TIIIRSEVPGIFCAGADLKERAKM----S-SSEVGPF 90 (272)
T ss_dssp GTTEEEEEECCGG--GTTCBCTTHHHHHHHHHHHHHHCSSCS-EEEEEESBTEEEECCBCHHHHTTS----C-HHHHHHH
T ss_pred cCCEEEEEEcCCC--cCCCCCHHHHHHHHHHHHHHHhCCCeE-EEEEecCCCCCCcCCCChhhhhcc----C-hHHHHHH
Confidence 6899999999997 799999999999999999999999999 99999988 799999999987542 1 2233445
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCHHHHH
Q 026127 86 VESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSATARR 164 (243)
Q Consensus 86 ~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~~a~ 164 (243)
...+++++.+|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+ +|++| +++|++++| ...++
T Consensus 91 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG-~~~A~ 167 (272)
T 1hzd_A 91 VSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASS-AKMGLVETKLAI-IPGGGGTQRLPRAIG-MSLAK 167 (272)
T ss_dssp HHHHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETT-CEEECCGGGGTC-CCCSSHHHHHHHHHC-HHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCC-CEEeCchhccCC-CCCchHHHHHHHHhC-HHHHH
Confidence 566788999999999999999999999999999999999999998 899999999999 78776 579999999 99999
Q ss_pred HHHhcCcCCCHHHHHHcCcchhccCCHhH----HHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 165 DVLLRAKKIKGEEALRMGLVEAAYDSEEQ----VAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 165 ~l~l~g~~~~a~eA~~~Glv~~v~~~~~~----l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
+++++|+.++|+||+++||||+|+|+ ++ +.+++.+++++++..| +.++..+|+.++...
T Consensus 168 ~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~~~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~ 230 (272)
T 1hzd_A 168 ELIFSARVLDGKEAKAVGLISHVLEQ-NQEGDAAYRKALDLAREFLPQG--PVAMRVAKLAINQGM 230 (272)
T ss_dssp HHHHHTCEEEHHHHHHHTSCSEEECC-CTTSCHHHHHHHHHHHTTTTSC--HHHHHHHHHHHHHHH
T ss_pred HHHHcCCcCCHHHHHHCCCcceecCh-hhhhHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence 99999999999999999999999997 55 4567889999999987 889999999987643
|
| >3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-47 Score=331.98 Aligned_cols=185 Identities=22% Similarity=0.250 Sum_probs=161.6
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|++|| +||+||.| +.||+|+|++++..... .. ..
T Consensus 8 v~~~~~~~v~~itLnrP~--~~Nal~~~m~~~L~~al~~~~~d~~vr-~vVltG~g~~~FcaG~Dl~~~~~~~~-~~-~~ 82 (363)
T 3bpt_A 8 VLLGKKGCTGVITLNRPK--FLNALTLNMIRQIYPQLKKWEQDPETF-LIIIKGAGGKAFCAGGDIRVISEAEK-AK-QK 82 (363)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEETTSSEEECCBCHHHHHHHHT-SS-CC
T ss_pred eEEEEECCEEEEEEcCCC--cCCCCCHHHHHHHHHHHHHHHhCCCeE-EEEEECCCCCcccCCcCHHHHHhhcc-cc-cH
Confidence 567889999999999997 899999999999999999999999999 99999988 99999999998754211 00 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+....++++.+|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+ +|++| +++|++++|
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~~g- 159 (363)
T 3bpt_A 83 IAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEK-CLFAMPETAIGL-FPDVGGGYFLPRLQG- 159 (363)
T ss_dssp CHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTT-CEEECCGGGTTS-CCCTTHHHHHHHSST-
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCC-eEEeCCccccCC-CCCchHHHHHHHhhH-
Confidence 11223444567888999999999999999999999999999999999988 899999999999 78877 568999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAE 196 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~ 196 (243)
. ++++|++||++++|+||+++|||++|+|+ +++.+
T Consensus 160 ~-~a~~l~ltg~~i~A~eA~~~GLv~~vv~~-~~l~~ 194 (363)
T 3bpt_A 160 K-LGYFLALTGFRLKGRDVYRAGIATHFVDS-EKLAM 194 (363)
T ss_dssp T-HHHHHHHHCCCEETHHHHHTTSCSEECCG-GGHHH
T ss_pred H-HHHHHHHcCCCCCHHHHHHCCCcceecCH-HHHHH
Confidence 6 88999999999999999999999999998 66754
|
| >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-46 Score=330.17 Aligned_cols=211 Identities=21% Similarity=0.272 Sum_probs=180.9
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC--------C-CcccCCCChhhHHhc
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH--------G-KFFSNGFDLAWAQAA 72 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~--------g-~~F~~G~Dl~~~~~~ 72 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|++|| +|||||. | ++||+|.|++++...
T Consensus 169 v~~e~~~gVa~ItLNRP~--k~NALs~~m~~eL~~al~~~~~D~~VR-vVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~~ 245 (440)
T 2np9_A 169 VHLERRDGVARLTMCRDD--RLNAEDGQQVDDMETAVDLALLDPGVR-VGLLRGGVMSHPRYRGKRVFSAGINLKYLSQG 245 (440)
T ss_dssp EEEEEETTEEEEEECCTT--TTTCBCHHHHHHHHHHHHHHHHCTTCS-EEEEEECBCCSTTTTTCBCCBCCBCHHHHHTT
T ss_pred EEEEEECCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEEcCCccccccCCCccccCCcchhhhhcc
Confidence 567889999999999997 899999999999999999999999999 9999994 6 899999999988653
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHH------------hcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccc
Q 026127 73 GSRTGARERLHYMVESFRPVVAAM------------MDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVD 140 (243)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~l------------~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~ 140 (243)
.. +............+++++..+ .++||||||+|||+|+|||++|+++||+||++++ ++|++||++
T Consensus 246 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~-A~Fglpev~ 323 (440)
T 2np9_A 246 GI-SLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSD-AYFSLPAAK 323 (440)
T ss_dssp CC-CTTTTHHHHHHTHHHHHHHCEECCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETT-CEEECCCTT
T ss_pred Cc-chhhhhhHHHHHHHHHHHHHHHhhcccchhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCC-CEEECchhc
Confidence 11 110110111122344555554 4799999999999999999999999999999998 899999999
Q ss_pred cCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 026127 141 IGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRK 220 (243)
Q Consensus 141 ~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~ 220 (243)
+|+ +|++|+++|++++| ..++++|+++|+.|+|+||+++||||+||++ +++.+++.+++++++ +.++..+|+
T Consensus 324 lGl-~P~~g~~~L~rlvG-~~~A~ellLtG~~i~A~EA~~~GLV~~Vvp~-~eL~~~a~~~A~~la-----~~Av~~~K~ 395 (440)
T 2np9_A 324 EGI-IPGAANLRLGRFAG-PRVSRQVILEGRRIWAKEPEARLLVDEVVEP-DELDAAIERSLTRLD-----GDAVLANRR 395 (440)
T ss_dssp TCC-CCTTHHHHHHHHHH-HHHHHHHHHHCCCEETTSGGGGGTCSEEECH-HHHHHHHHHHHHTTC-----SHHHHHHHH
T ss_pred cCc-CcchHHHHHHHHhh-HHHHHHHHHcCCCCCHHHHHHCCCCcEecCh-HHHHHHHHHHHHHhC-----HHHHHHHHH
Confidence 999 79888889999999 9999999999999999999999999999997 889999999998873 457899999
Q ss_pred HHhHH
Q 026127 221 SLCPD 225 (243)
Q Consensus 221 ~l~~~ 225 (243)
.++..
T Consensus 396 ~l~~~ 400 (440)
T 2np9_A 396 MLNLA 400 (440)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88754
|
| >3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=333.88 Aligned_cols=187 Identities=17% Similarity=0.148 Sum_probs=164.0
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCc--ch
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRT--GA 78 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~--~~ 78 (243)
+.++++++|++||||||+ +.|++|.+|+.+|.+++++++.|++|| +|||||.| ++||+|+|++++....... ..
T Consensus 44 v~~~~~~~V~~ItLnrP~--~~NAl~~~m~~~L~~al~~~~~d~~vr-~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~~~ 120 (407)
T 3ju1_A 44 LATASGKLVGVVTLNVEK--ALNALDLDMVRAMTVQLNLWKKDPLIA-CVVLDGSGEKAFCAGGDVRALYHASVAAKGQV 120 (407)
T ss_dssp EECTTSCEEEEEEECCGG--GTSCBCHHHHHHHHHHHHHHHHCTTEE-EEEEEESSSSEEECCBCCHHHHHHHHHHTSSC
T ss_pred EEEEEECCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEecCCCCcccCCCChhhhhhccccccccc
Confidence 456678999999999997 789999999999999999999999999 99999999 8999999999886421100 01
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHh
Q 026127 79 RERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKV 157 (243)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~ 157 (243)
......+....++++.+|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+ +|++| +++|++++
T Consensus 121 ~~~~~~~~~~~~~l~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~-a~f~~pe~~lGl-~P~~G~t~~L~rl~ 198 (407)
T 3ju1_A 121 TEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTET-SRIAMPEVTIGL-YPDVGGSYFLNRMP 198 (407)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTT-CEEECGGGGGTC-CSCTTHHHHTTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCC-CEEeChHhhcCC-CCCchHHHHHhhhh
Confidence 2334566667788999999999999999999999999999999999999998 899999999999 78877 56888888
Q ss_pred CCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHH
Q 026127 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAE 196 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~ 196 (243)
| .++++|++||++|+|+||+++|||++|+|+ +++.+
T Consensus 199 g--~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~-~~l~~ 234 (407)
T 3ju1_A 199 G--KMGLFLGLTAYHMNAADACYVGLADHYLNR-DDKEL 234 (407)
T ss_dssp T--THHHHHHHHCCCBCHHHHHHHTSCSEECCG-GGHHH
T ss_pred H--HHHHHHHHcCCcCcHHHHHHCCCccEEcCH-HHHHH
Confidence 7 578999999999999999999999999998 66666
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-44 Score=323.19 Aligned_cols=213 Identities=19% Similarity=0.201 Sum_probs=185.0
Q ss_pred ceeeEeCcEEEEEEcCCCC--------CCCCCCCHHHHHHHHHHHHHHHhc-CCCCeEEEEec-CCCcccCCCChhhHHh
Q 026127 2 CTLEKHGDVFVLTLTGSSD--------VDEHRFGPPAIDSILSAIAKAKAE-ATPGSALITTS-HGKFFSNGFDLAWAQA 71 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~--------~~~N~l~~~~~~~l~~~l~~~~~d-~~v~~~vvl~g-~g~~F~~G~Dl~~~~~ 71 (243)
+.++++++|++|+||+|++ .+.|++|.+|+.+|.+++++++.| ++|| +||++| .|+.||+|+|++++..
T Consensus 23 v~ve~~ggVA~ITLNRPed~~l~~g~~~k~NALs~~ml~eL~~AL~~~~~D~~~VR-aVVLTGa~G~~FcAGaDL~el~~ 101 (556)
T 2w3p_A 23 WKLSFNGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVR-TVVLTSLKDRVFCSGANIFMLGL 101 (556)
T ss_dssp EEEEEETTEEEEEECCCTTCCSSSSCCCCTTEECHHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSSEEECEECHHHHHH
T ss_pred EEEEeeCCEEEEEEecccccccccccCCCCCCCCHHHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCcccCCcCHHHHhh
Confidence 5678899999999999931 157999999999999999999999 9999 999999 8999999999999875
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHH----hcCCCcEEEEEccccchHHHHHHHhcceeEEecC-Cceeeccccc-cCcCC
Q 026127 72 AGSRTGARERLHYMVESFRPVVAAM----MDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRD-KGVLYMSEVD-IGLTL 145 (243)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~-~~~f~~pe~~-~Gl~~ 145 (243)
.. ......+.+.+++++.+| .++||||||+|||+|+|||++|+++||+||++++ +++|++||++ +|+ +
T Consensus 102 ~~-----~~~~~~~~~~~~~l~~~L~~a~~~~pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~~LGL-~ 175 (556)
T 2w3p_A 102 ST-----HAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGV-L 175 (556)
T ss_dssp SC-----HHHHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHHHHSS-C
T ss_pred cc-----cHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEecccccccCC-C
Confidence 21 122233445567788888 9999999999999999999999999999999987 3789999999 999 7
Q ss_pred Chhh-HHHHH--HHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 026127 146 PDYF-AALFR--AKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSL 222 (243)
Q Consensus 146 p~~g-~~~l~--~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l 222 (243)
|++| +++++ +++| ..++++++++|+.++|+||+++||||+|+|+ +++.+++.++|++++..| +.++.. |+.+
T Consensus 176 Pg~Ggt~rLp~~RlVG-~~rA~eLlLTGr~isA~EAl~lGLVdeVVp~-~eL~~~A~~lA~~LA~~~--p~Av~~-K~l~ 250 (556)
T 2w3p_A 176 PGTGGLTRVTDKRKVR-HDRADIFCTVVEGVRGERAKAWRLVDEVVKP-NQFDQAIQARALELAAQS--DRPAHA-QGVP 250 (556)
T ss_dssp CTTTHHHHHHHTSCCC-HHHHHHHTTCSSCEEHHHHHHTTSCSEEECH-HHHHHHHHHHHHHHHTTC--CCCTTC-CCCC
T ss_pred CCccHHHHHHhhccCC-HHHHHHHHHcCCCCCHHHHHHCCCceEEeCh-hHHHHHHHHHHHHHHcCC--hHHHhh-hhhh
Confidence 8887 56899 9999 9999999999999999999999999999987 899999999999999998 556554 6655
Q ss_pred hHHH
Q 026127 223 CPDL 226 (243)
Q Consensus 223 ~~~~ 226 (243)
+..+
T Consensus 251 ~~~l 254 (556)
T 2w3p_A 251 LTRI 254 (556)
T ss_dssp CCCC
T ss_pred cchh
Confidence 5443
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-43 Score=332.31 Aligned_cols=186 Identities=23% Similarity=0.370 Sum_probs=169.3
Q ss_pred eEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHH
Q 026127 5 EKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHY 84 (243)
Q Consensus 5 ~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 84 (243)
+.+|+|++|||||| +.|++|.+|+.+|.+++++++.|++|| +|||||.|+.||+|.|++++..... ..
T Consensus 26 ~~~~~Va~itlnrP---~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aGaDl~~~~~~~~----~~---- 93 (742)
T 3zwc_A 26 RLPHSLAMIRLCNP---PVNAVSPTVIREVRNGLQKAGSDHTVK-AIVICGANGNFCAGADIHGFSAFTP----GL---- 93 (742)
T ss_dssp ECSTTEEEEEECCT---TTTCBCHHHHHHHHHHHHHHHTCTTCC-EEEEEESTTCSBCCBCSSSCCSSCS----CS----
T ss_pred EeeCCEEEEEeCCC---cccCCCHHHHHHHHHHHHHHhhCCCCe-EEEEECCCCccccCcChHhhhccCh----hH----
Confidence 45899999999999 789999999999999999999999999 9999999999999999998865322 11
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCHHHH
Q 026127 85 MVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSATAR 163 (243)
Q Consensus 85 ~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~~a 163 (243)
.+.+++.+|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+ +|++| +++|++++| ..+|
T Consensus 94 ---~~~~~~~~i~~~~kPvIAai~G~a~GGG~elalacD~ria~~~-a~fg~pev~lGl-~Pg~ggt~rL~rlvG-~~~A 167 (742)
T 3zwc_A 94 ---ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAK-ARVGLPEVTLGI-LPGARGTQLLPRVVG-VPVA 167 (742)
T ss_dssp ---HHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHTSSEEEEETT-CEEECGGGGGTC-CCTTTHHHHHHHHHC-HHHH
T ss_pred ---HHHHHHHHHHhCCCCEEEEECccchHHHHHHHHhcCEEEEcCC-CEEECcccCccc-CCCccHHHHHHHhhh-HHHH
Confidence 2456788899999999999999999999999999999999998 899999999999 78876 579999999 9999
Q ss_pred HHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCC
Q 026127 164 RDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKW 210 (243)
Q Consensus 164 ~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~ 210 (243)
++|+++|+.++|+||+++||||+|+++ + ..++|.++|++++.+++
T Consensus 168 ~~l~ltG~~i~a~eA~~~GLv~~vv~~-d-~~~~A~~~A~~ia~~~~ 212 (742)
T 3zwc_A 168 LDLITSGKYLSADEALRLGILDAVVKS-D-PVEEAIKFAQKIIDKPI 212 (742)
T ss_dssp HHHHHHCCCEEHHHHHHHTSCSEEESS-C-HHHHHHHHHHHHTTSCS
T ss_pred HHHHHcCCchhHHHHHHcCCccEecCc-h-hhHHHHHHHHHHhcCCc
Confidence 999999999999999999999999987 5 45789999999998864
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-41 Score=318.70 Aligned_cols=198 Identities=22% Similarity=0.333 Sum_probs=175.5
Q ss_pred ceee-EeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCC-cccCCCChhhHHhcCCCcchH
Q 026127 2 CTLE-KHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGK-FFSNGFDLAWAQAAGSRTGAR 79 (243)
Q Consensus 2 ~~~~-~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~-~F~~G~Dl~~~~~~~~~~~~~ 79 (243)
+.++ ++++|++||||+|+ .+.|++|.+|+.+|.+++++++.|+++| +||+|| |+ .||+|.|++++..... .. .
T Consensus 8 i~~~~~~~~va~itlnrp~-~~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg-g~~~F~aG~Dl~~~~~~~~-~~-~ 82 (715)
T 1wdk_A 8 ITVTALESGIVELKFDLKG-ESVNKFNRLTLNELRQAVDAIKADASVK-GVIVSS-GKDVFIVGADITEFVENFK-LP-D 82 (715)
T ss_dssp EEEEECGGGEEEEEECCTT-SSSCBCCHHHHHHHHHHHHHHHHCTTCC-EEEEEE-SSSSSBBCCCHHHHHHHTT-SC-H
T ss_pred EEEEEeeCCEEEEEEcCCC-CCCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEEC-CCCeEeCCcCHHHHhhccc-CC-H
Confidence 4566 67899999999992 1479999999999999999999999999 999999 76 9999999999865321 11 2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhC
Q 026127 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVG 158 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g 158 (243)
.....+...+++++.+|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+ +|++| +++|++++|
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~-a~fglpev~lGl-~P~~ggt~~L~r~vG 160 (715)
T 1wdk_A 83 AELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADS-AKIGLPEVKLGI-YPGFGGTVRLPRLIG 160 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETT-CEEECGGGGGTC-CCCSSHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCC-CEEeChhhccCC-CCCccHHHHHHHHhC
Confidence 233344566788999999999999999999999999999999999999998 899999999999 78886 579999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcC
Q 026127 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~ 208 (243)
..++++++++|+.++|+||+++||||+|+++ +++.++|.+++++++..
T Consensus 161 -~~~A~~l~ltG~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~ 208 (715)
T 1wdk_A 161 -VDNAVEWIASGKENRAEDALKVSAVDAVVTA-DKLGAAALDLIKRAISG 208 (715)
T ss_dssp -HHHHHHHHHHCCCEEHHHHHHTTSSSEEECG-GGHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHcCCCCCHHHHHHCCCceEEeCh-HHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999987 88999999999999876
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-42 Score=323.96 Aligned_cols=196 Identities=23% Similarity=0.322 Sum_probs=167.2
Q ss_pred ceee-EeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCC-cccCCCChhhHHhcCCCcchH
Q 026127 2 CTLE-KHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGK-FFSNGFDLAWAQAAGSRTGAR 79 (243)
Q Consensus 2 ~~~~-~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~-~F~~G~Dl~~~~~~~~~~~~~ 79 (243)
+.++ ++++|++|||||| +.|++|.+|+.+|.+++++++.|+++| +||+|| |+ .||+|.|++++..... .. .
T Consensus 9 i~~~~~~~~va~itlnrp---~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg-g~~~F~aG~Dl~~~~~~~~-~~-~ 81 (725)
T 2wtb_A 9 TVMEVGGDGVAVITLINP---PVNSLSFDVLYNLKSNYEEALSRNDVK-AIVITG-AKGRFSGGFDISGFGEMQK-GN-V 81 (725)
T ss_dssp EEEEECTTSEEEEEEECT---TTTCCCHHHHHHHHHHHHHHTTCTTCC-EEEEEE-SSSCCBCSSCC-------------
T ss_pred EEEEEeeCCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEEC-CCCcccCCcCHHHHhcccc-hh-h
Confidence 4566 6789999999999 899999999999999999999999999 999999 76 9999999998754210 00 0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhC
Q 026127 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVG 158 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g 158 (243)
.....+...+++++.+|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+ +|++| +++|++++|
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~-a~fglpev~lGl-~P~~Ggt~~L~rlvG 159 (725)
T 2wtb_A 82 KEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPA-AQLGLPELQLGV-IPGFGGTQRLPRLVG 159 (725)
T ss_dssp -CCSSSHHHHHCCCCCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTT-CEEECCGGGGTC-CCCSSHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCC-CEEeCchhccCC-CCCccHHHHHHHhcC
Confidence 000112334566778889999999999999999999999999999999998 899999999999 78886 579999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcC
Q 026127 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~ 208 (243)
..++++++++|+.++|+||+++||||+|+++ +++.+++.+++++++..
T Consensus 160 -~~~A~~l~ltG~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~ 207 (725)
T 2wtb_A 160 -LTKALEMILTSKPVKAEEGHSLGLIDAVVPP-AELVTTARRWALDIVGR 207 (725)
T ss_dssp -HHHHHHHHHHCCCEEHHHHHHHTSCSEECCT-TTHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHcCCCCCHHHHHHCCccceEcCh-hHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999987 78999999999999876
|
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.8e-24 Score=196.28 Aligned_cols=170 Identities=20% Similarity=0.245 Sum_probs=139.5
Q ss_pred EeCcEEEEEEcCCCCCCCCC--CCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHH
Q 026127 6 KHGDVFVLTLTGSSDVDEHR--FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLH 83 (243)
Q Consensus 6 ~~~~v~~i~ln~p~~~~~N~--l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 83 (243)
.+++|++|++|+|. ..|+ ++..+.++|.++|+++..|+++| +||+++.+ .|+|+...
T Consensus 299 ~~~~VavI~l~g~i--~~n~~~~~~~~~~~l~~~L~~a~~d~~vk-aVVL~i~s----pGG~~~~~-------------- 357 (593)
T 3bf0_A 299 TGDSIGVVFANGAI--MDGEETQGNVGGDTTAAQIRDARLDPKVK-AIVLRVNS----PGGSVTAS-------------- 357 (593)
T ss_dssp CSCEEEEEEEEEEE--ESSSSCTTSEEHHHHHHHHHHHHHCTTEE-EEEEEEEE----EEECHHHH--------------
T ss_pred CCCCEEEEEEeeee--cCCccccchhHHHHHHHHHHHHHhCCCCC-EEEEEecC----CCCCHHHH--------------
Confidence 35789999999996 6787 68899999999999999999999 99999864 57776542
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeecccc------------ccCcCCChh---
Q 026127 84 YMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEV------------DIGLTLPDY--- 148 (243)
Q Consensus 84 ~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~------------~~Gl~~p~~--- 148 (243)
..+++.+.++..++||||++|+|.|.|||+.|+++||++||+++ +.|+.+++ ++|+ .|+.
T Consensus 358 ---~~i~~~i~~l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~-a~~Gsigv~~~~~~~~~~~~klGi-~~~~~~~ 432 (593)
T 3bf0_A 358 ---EVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPS-TLTGSIGIFGVITTVENSLDSIGV-HTDGVST 432 (593)
T ss_dssp ---HHHHHHHHHHHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTT-CEEECCCEEEEEEECHHHHHHTTC-EEECCBS
T ss_pred ---HHHHHHHHHHHhCCCCEEEEECCChHHHHHHHHHhCCEEEECCC-CEeecceeEEecCchHHHHHhcCc-eeeeeec
Confidence 12345667788899999999999999999999999999999998 88998874 5787 3421
Q ss_pred ----------h-H---------------HHHHHHhCCHHH-----HHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHH
Q 026127 149 ----------F-A---------------ALFRAKVGSATA-----RRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEA 197 (243)
Q Consensus 149 ----------g-~---------------~~l~~~~g~~~~-----a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~ 197 (243)
+ + ..+.+.++ ..+ +.+++++|+.|+|+||+++||||+|++. +++.+.
T Consensus 433 g~~k~~~~~~~~t~~~~~~l~~~l~~~~~~f~~~V~-~~Rg~~~~a~~~l~~G~~~ta~eA~~~GLVD~v~~~-~~~~~~ 510 (593)
T 3bf0_A 433 SPLADVSITRALPPEAQLMMQLSIENGYKRFITLVA-DARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDF-DDAVAK 510 (593)
T ss_dssp CGGGCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCHHHHHTTCTTCEEEHHHHHHHTSCSEECCH-HHHHHH
T ss_pred ccccccCcCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHhcCCCcCHHHHHHCCCCcCccCH-HHHHHH
Confidence 1 1 35667777 565 7889999999999999999999999976 778887
Q ss_pred HHHHHH
Q 026127 198 SMRLAK 203 (243)
Q Consensus 198 a~~~a~ 203 (243)
+.+++.
T Consensus 511 a~~~a~ 516 (593)
T 3bf0_A 511 AAELAK 516 (593)
T ss_dssp HHHHSC
T ss_pred HHHHcC
Confidence 777643
|
| >3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-21 Score=158.21 Aligned_cols=157 Identities=19% Similarity=0.242 Sum_probs=127.2
Q ss_pred EeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHH
Q 026127 6 KHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYM 85 (243)
Q Consensus 6 ~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 85 (243)
..+.|++|+++.+ ++..+...|.++++.++++ +++ +|+++.. |.|+++...
T Consensus 6 ~~~~V~vI~i~g~-------I~~~~~~~l~~~l~~a~~~-~~~-~Ivl~in----spGG~v~~~---------------- 56 (230)
T 3viv_A 6 AKNIVYVAQIKGQ-------ITSYTYDQFDRYITIAEQD-NAE-AIIIELD----TPGGRADAM---------------- 56 (230)
T ss_dssp CCCEEEEEEEESC-------BCHHHHHHHHHHHHHHHHT-TCS-EEEEEEE----BSCEEHHHH----------------
T ss_pred CCCeEEEEEEeCE-------ECHHHHHHHHHHHHHHhcC-CCC-EEEEEEe----CCCcCHHHH----------------
Confidence 3567999999854 9999999999999999864 688 8888764 778766532
Q ss_pred HHHHHHHHHHHhcCCCcEEEEE---ccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhH------------
Q 026127 86 VESFRPVVAAMMDLPMPTVAAV---NGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFA------------ 150 (243)
Q Consensus 86 ~~~~~~~~~~l~~~~kp~Iaav---~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~------------ 150 (243)
..++..|..+|||||+.| +|.|.|+|+.|+++||+++++++ ++|+.++...+. |..|.
T Consensus 57 ----~~i~~~i~~~~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~-a~ig~~~p~~~~--~~~G~~~~~~~k~~~~~ 129 (230)
T 3viv_A 57 ----MNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPG-TSIGACRPILGY--SQNGSIIEAPPAITNYF 129 (230)
T ss_dssp ----HHHHHHHHTCSSCEEEEECSTTCEEETHHHHHHHTSSEEEECTT-CEEECCCEEEEE--CTTSCEEECCHHHHHHH
T ss_pred ----HHHHHHHHhCCCCEEEEEecCCCEEhHHHHHHHHhcCceeECCC-CEEEeccceecC--CCCCCchHHHHHHHHHH
Confidence 346677888999999999 99999999999999999999998 889988877432 22221
Q ss_pred ----HHHHHHhCC-HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHH
Q 026127 151 ----ALFRAKVGS-ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEAS 198 (243)
Q Consensus 151 ----~~l~~~~g~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a 198 (243)
..+.++.|. ...+++++..+..++|+||+++||||+|+++.+++.+++
T Consensus 130 ~~~~~~la~~~Gr~~~~a~~~~~~~~~ltA~EAle~GliD~V~~~~~~ll~~~ 182 (230)
T 3viv_A 130 IAYIKSLAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELLKKS 182 (230)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTCCEECHHHHHHTTSCSEECSSHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHhcCCeecHHHHHHcCCceEecCCHHHHHHHh
Confidence 246777882 378899999999999999999999999998856565544
|
| >3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-21 Score=159.87 Aligned_cols=168 Identities=14% Similarity=0.183 Sum_probs=124.7
Q ss_pred eCcEEEEEEcCCCCCCCCC-----CC--HHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchH
Q 026127 7 HGDVFVLTLTGSSDVDEHR-----FG--PPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGAR 79 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~-----l~--~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~ 79 (243)
++.|+.|.++.+= ..+. ++ .-.+++|.++++++.+|++|| +||+++. |.|+|+....
T Consensus 2 ~~~iavi~i~G~I--~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~-~ivL~~~----s~Gg~~~~~~--------- 65 (240)
T 3rst_A 2 SSKIAVLEVSGTI--QDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVK-GIVLKVN----SPGGGVYESA--------- 65 (240)
T ss_dssp CCEEEEEEEESCB--CCC---------CCCCHHHHHHHHHHHHHCTTEE-EEEEEEE----ECCBCHHHHH---------
T ss_pred CCeEEEEEEEEEE--cCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcE-EEEEEec----CCCCCHHHHH---------
Confidence 4679999998763 1111 11 014689999999999999999 9999886 6788876432
Q ss_pred HHHHHHHHHHHHHHHHHhc-CCCcEEEEEccccchHHHHHHHhcceeEEecCCceeecc---------------------
Q 026127 80 ERLHYMVESFRPVVAAMMD-LPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMS--------------------- 137 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~-~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~p--------------------- 137 (243)
.+.+.+.++.. ++|||||+++|.|.|+|+.|+++||++|++++ +.|+.+
T Consensus 66 --------~i~~~l~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~-a~~g~~Gv~~~~~~~~~~l~k~Gi~~~ 136 (240)
T 3rst_A 66 --------EIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPE-TLTGSLGVIMESVNYSKLADKLGISFE 136 (240)
T ss_dssp --------HHHHHHHHHHHHHCCCEEEEEEEEEETHHHHHHTTSSEEEECTT-CEEECCCCEEEEEECHHHHHHHTCEEE
T ss_pred --------HHHHHHHHHHHhCCCeEEEEECCeehHhHHHHHHhCCeeEECCC-CeEeccceeeEecCHHHHHHHcCCeEE
Confidence 23455666666 89999999999999999999999999999998 889998
Q ss_pred ccccCcCCChhhHH---------------------------HHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCC
Q 026127 138 EVDIGLTLPDYFAA---------------------------LFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 138 e~~~Gl~~p~~g~~---------------------------~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
..+.|- +++.+.. ...|.+. ....+ .+++|+.|++++|+++||||++.+.
T Consensus 137 ~~~~G~-~k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~~Va~~R~l~-~~~~~-~~~~g~~~~a~~A~~~GLVD~i~~~ 213 (240)
T 3rst_A 137 TIKSGA-HADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMP-KAEVK-KIADGRVYDGRQAKKLNLVDELGFY 213 (240)
T ss_dssp EEESST-TTTTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-HHHHH-HHCSSCEEEHHHHHHTTSSSEECCH
T ss_pred EEeccc-cccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-HHHHH-HHhcCCcccHHHHHHcCCCcccCCH
Confidence 555665 4544310 1123345 44444 4778999999999999999999986
Q ss_pred HhHHHHHHHHHHH
Q 026127 191 EEQVAEASMRLAK 203 (243)
Q Consensus 191 ~~~l~~~a~~~a~ 203 (243)
+++.+.+.+++.
T Consensus 214 -~~~~~~~~~~~~ 225 (240)
T 3rst_A 214 -DDTITAMKKDHK 225 (240)
T ss_dssp -HHHHHHHHHHCG
T ss_pred -HHHHHHHHHHhC
Confidence 667666665543
|
| >1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-16 Score=128.83 Aligned_cols=137 Identities=14% Similarity=0.110 Sum_probs=107.9
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVA 105 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 105 (243)
++.++.+++.+.|..++.++.++ .|++. ..|.|+++.. ...++..|..+++||++
T Consensus 54 I~~~~a~~i~~~L~~l~~~~~~k-~I~l~----InSPGG~v~a--------------------g~~I~~~i~~~~~pV~t 108 (218)
T 1y7o_A 54 VEDNMANSVIAQLLFLDAQDSTK-DIYLY----VNTPGGSVSA--------------------GLAIVDTMNFIKADVQT 108 (218)
T ss_dssp BCHHHHHHHHHHHHHHHHHCTTS-CEEEE----EEECCBCHHH--------------------HHHHHHHHHHSSSCEEE
T ss_pred ECHHHHHHHHHHHHHHHhcCCCC-CEEEE----EECcCCCHHH--------------------HHHHHHHHHhcCCCEEE
Confidence 88899999999999999887777 66664 4666765543 13356677788999999
Q ss_pred EEccccchHHHHHHHhcce--eEEecCCceeeccccccCcCCChhh-------------------HHHHHHHhCC-HHHH
Q 026127 106 AVNGHAAAAGLTLALSHDY--VIMRRDKGVLYMSEVDIGLTLPDYF-------------------AALFRAKVGS-ATAR 163 (243)
Q Consensus 106 av~G~~~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~~p~~g-------------------~~~l~~~~g~-~~~a 163 (243)
.++|.|.++|+.|+++||. |++.++ +.|++++..-|. |..| ...+.+..|. ...+
T Consensus 109 ~v~G~AaS~G~~Ia~a~d~g~r~a~p~-a~igih~p~~g~--~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i 185 (218)
T 1y7o_A 109 IVMGMAASMGTVIASSGAKGKRFMLPN-AEYMIHQPMGGT--GGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKV 185 (218)
T ss_dssp EEEEEEETHHHHHHTTSCTTCEEECTT-CEEECCCCC----------------CHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred EEccEeHHHHHHHHHcCCcCcEEEcCC-cEEEEecccccc--cCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999999999 999998 889988887333 3222 1456677772 2477
Q ss_pred HHHHhcCcCCCHHHHHHcCcchhccCC
Q 026127 164 RDVLLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 164 ~~l~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
++++..++.|+|+||+++||||+|+++
T Consensus 186 ~~~~~~~~~~ta~EA~e~GLVD~v~~~ 212 (218)
T 1y7o_A 186 HADAERDNWMSAQETLEYGFIDEIMAN 212 (218)
T ss_dssp HHHHHSCCCBCHHHHHHHTSCSEECCC
T ss_pred HHHHhCCCEEcHHHHHHCCCCcEEcCc
Confidence 788889999999999999999999987
|
| >2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-16 Score=135.01 Aligned_cols=158 Identities=12% Similarity=0.114 Sum_probs=123.5
Q ss_pred EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHH
Q 026127 10 VFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESF 89 (243)
Q Consensus 10 v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (243)
|+.+..+..- ..|+++..+.+++.++++.+.++ .+. +|++++.| |.|+.+... .. ..+
T Consensus 120 V~v~a~d~~~--~ggslg~~~~~Ki~r~~e~A~~~-~~P-vI~l~~sG-----Garlqeg~~---------~l----~~~ 177 (304)
T 2f9y_B 120 VVAAAFEFAF--MGGSMGSVVGARFVRAVEQALED-NCP-LICFSASG-----GARMQEALM---------SL----MQM 177 (304)
T ss_dssp CBEEEECTTS--TTTCBCTHHHHHHHHHHHHHHHH-TCC-EEEEEEES-----SBCGGGTHH---------HH----HHH
T ss_pred EEEEEEcCcc--ccCCCCHHHHHHHHHHHHHHHhC-CCC-EEEEECCC-----CcCHHHHHH---------HH----HHH
Confidence 3444444332 47999999999999999999998 788 89998866 778754321 11 223
Q ss_pred HHHHHHH---hcCCCcEEEEEccccchHH-HHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHH
Q 026127 90 RPVVAAM---MDLPMPTVAAVNGHAAAAG-LTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRD 165 (243)
Q Consensus 90 ~~~~~~l---~~~~kp~Iaav~G~~~G~G-~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~ 165 (243)
.+++.++ ...++|+|++|+|+|.||| +.++++||++|+.++ ++|++. |...+.+.+| ..
T Consensus 178 ~~i~~al~~~~~~~vP~IavV~G~~~GGg~a~~a~~~D~via~~~-A~i~v~-----------Gp~~i~~~ig-~~---- 240 (304)
T 2f9y_B 178 AKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPK-ALIGFA-----------GPRVIEQTVR-EK---- 240 (304)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTT-CBEESS-----------CHHHHHHHHT-SC----
T ss_pred HHHHHHHHHHhcCCCCEEEEEECCCccHHHHHHHhcCCEEEEeCC-cEEEee-----------cHHHHHHHhC-cc----
Confidence 4455555 4559999999999999999 788999999999988 777754 3455677777 32
Q ss_pred HHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCC
Q 026127 166 VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRK 209 (243)
Q Consensus 166 l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~ 209 (243)
++++..+|++++++|+||.|+++ +++.+.+.+++..+...|
T Consensus 241 --l~~~~~~Ae~~~~~Glvd~Vv~~-~el~~~l~~ll~~l~~~~ 281 (304)
T 2f9y_B 241 --LPPGFQRSEFLIEKGAIDMIVRR-PEMRLKLASILAKLMNLP 281 (304)
T ss_dssp --CCTTTTBHHHHGGGTCCSEECCH-HHHHHHHHHHHHHHTTCC
T ss_pred --CCcccCCHHHHHhcCCccEEeCc-HHHHHHHHHHHHHhhcCC
Confidence 46888999999999999999988 789999999999997653
|
| >2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.8e-15 Score=128.08 Aligned_cols=157 Identities=18% Similarity=0.198 Sum_probs=112.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026127 24 HRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPT 103 (243)
Q Consensus 24 N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ 103 (243)
++++.+..+...++++.+++..-+- +.++.+.|... |..-++ ......+.+++.++.++++|+
T Consensus 139 G~~~~~~~~Ka~r~~~~A~~~~~Pl-I~lvdt~Ga~~--g~~ae~--------------~g~~~~~a~~l~al~~~~vPv 201 (327)
T 2f9i_A 139 GMAHPEGYRKALRLMKQAEKFNRPI-FTFIDTKGAYP--GKAAEE--------------RGQSESIATNLIEMASLKVPV 201 (327)
T ss_dssp GCCCHHHHHHHHHHHHHHHHTTCCE-EEEEEESCSCC--CHHHHH--------------TTHHHHHHHHHHHHHTCSSCE
T ss_pred CCCCHHHHHHHHHHHHHHhhcCCCE-EEEEeCCCCCc--chhhhh--------------hhhHHHHHHHHHHHHhCCCCE
Confidence 5899999999999999998876653 44444433322 221111 112345567788899999999
Q ss_pred EEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCc
Q 026127 104 VAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGL 183 (243)
Q Consensus 104 Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Gl 183 (243)
|++|+|.|.|||+.++++||++||.++ ++|++ + .|.+++..+.+..+....+.++ +.++|++|+++|+
T Consensus 202 IavV~G~a~GGGa~~~~~~D~via~~~-A~~~v------~-~peg~a~il~~~~~~a~~A~e~----~~itA~~a~~~Gl 269 (327)
T 2f9i_A 202 IAIVIGEGGSGGALGIGIANKVLMLEN-STYSV------I-SPEGAAALLWKDSNLAKIAAET----MKITAHDIKQLGI 269 (327)
T ss_dssp EEEEEEEEBHHHHHTTCCCSEEEEETT-CBCBS------S-CHHHHHHHHSSCGGGHHHHHHH----HTCBHHHHHHTTS
T ss_pred EEEEECCcChHHHHHHHCCCEEEEcCC-ceEee------c-CchHHHHHHHHHhcchHHHHHH----cCCCHHHHHHcCC
Confidence 999999999999999999999999998 77774 3 5777666666555424555555 7799999999999
Q ss_pred chhccCCH--------h----HHHHHHHHHHHHHhcCC
Q 026127 184 VEAAYDSE--------E----QVAEASMRLAKQLAGRK 209 (243)
Q Consensus 184 v~~v~~~~--------~----~l~~~a~~~a~~l~~~~ 209 (243)
||+|++.+ + ++.+...+..+.+...+
T Consensus 270 Vd~VV~ep~gga~~~~~~~~~~lr~~l~~~L~~l~~~~ 307 (327)
T 2f9i_A 270 IDDVISEPLGGAHKDIEQQALAIKSAFVAQLDSLESLS 307 (327)
T ss_dssp SSEEECCCTTCGGGCHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred ceEEecCCCCCCccCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999853 2 44444444455554443
|
| >2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-14 Score=124.24 Aligned_cols=138 Identities=16% Similarity=0.146 Sum_probs=103.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026127 24 HRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPT 103 (243)
Q Consensus 24 N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ 103 (243)
++++.+..+...++++.+++..-+- +.++.+.|... |...++ ......+.+++.++.++++|+
T Consensus 153 G~~~~~~~~Ka~r~~~~A~~~~lPl-I~lvDt~Ga~~--g~~aE~--------------~g~~~~~a~~l~al~~~~vPv 215 (339)
T 2f9y_A 153 GMPAPEGYRKALRLMQMAERFKMPI-ITFIDTPGAYP--GVGAEE--------------RGQSEAIARNLREMSRLGVPV 215 (339)
T ss_dssp GCCCHHHHHHHHHHHHHHHHTTCCE-EEEEEESCSCC--SHHHHH--------------TTHHHHHHHHHHHHHTCSSCE
T ss_pred CCCCHHHHHHHHHHHHHHhhcCCCE-EEEEeCCCCcc--chHHHH--------------HHHHHHHHHHHHHHHhCCCCE
Confidence 5899999999999999998876653 44443333222 221111 112445677888899999999
Q ss_pred EEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCc
Q 026127 104 VAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGL 183 (243)
Q Consensus 104 Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Gl 183 (243)
|++|+|.|.|||+.++++||++||.++ ++|++ + .|.+++..+.+.......+.++ ..++|++|+++|+
T Consensus 216 IavV~G~a~GGGa~~~~~~D~via~p~-A~~~v------~-~Peg~asil~~~~~~~~~Aae~----~~itA~~a~~~Gl 283 (339)
T 2f9y_A 216 VCTVIGEGGSGGALAIGVGDKVNMLQY-STYSV------I-SPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKL 283 (339)
T ss_dssp EEEEEEEEEHHHHHTTCCCSEEEECTT-CEEES------S-CHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTS
T ss_pred EEEEeCCcCcHHHHHHhccCeeeecCC-CEEEe------e-ccchHHHHHHHhhccHHHHHHH----cCCCHHHHHHcCC
Confidence 999999999999999999999999998 77874 3 5777766554443325666666 6799999999999
Q ss_pred chhccCC
Q 026127 184 VEAAYDS 190 (243)
Q Consensus 184 v~~v~~~ 190 (243)
||+|++.
T Consensus 284 Vd~VV~e 290 (339)
T 2f9y_A 284 IDSIIPE 290 (339)
T ss_dssp CSCCCCC
T ss_pred eeEEecC
Confidence 9999985
|
| >2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A | Back alignment and structure |
|---|
Probab=99.38 E-value=5.4e-12 Score=102.07 Aligned_cols=149 Identities=17% Similarity=0.084 Sum_probs=99.8
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVA 105 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 105 (243)
++..+.+.+.+.|..++.++.++ .|++. .-|.|+++.. ...++..|..+++||++
T Consensus 36 I~~~~a~~i~~~L~~~~~~~~~k-~I~l~----InSPGG~v~a--------------------~~~I~~~i~~~~~pV~~ 90 (208)
T 2cby_A 36 VNDEIANRLCAQILLLAAEDASK-DISLY----INSPGGSISA--------------------GMAIYDTMVLAPCDIAT 90 (208)
T ss_dssp BCHHHHHHHHHHHHHHHHHCSSS-CEEEE----EEECCBCHHH--------------------HHHHHHHHHHCSSCEEE
T ss_pred ECHHHHHHHHHHHHHHHhCCCCC-CEEEE----EECCCCCHHH--------------------HHHHHHHHHhcCCCEEE
Confidence 78899999999999999877777 55552 3455654432 23466677788999999
Q ss_pred EEccccchHHHHHHHhcce--eEEecCCceeeccccccCcCCC--hhh-------------HHHHHHHhCC-HHHHHHHH
Q 026127 106 AVNGHAAAAGLTLALSHDY--VIMRRDKGVLYMSEVDIGLTLP--DYF-------------AALFRAKVGS-ATARRDVL 167 (243)
Q Consensus 106 av~G~~~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~~p--~~g-------------~~~l~~~~g~-~~~a~~l~ 167 (243)
.+.|.|.++|..++++||. |++.++ +.+++....-|..-+ +.. ...+.+..|. .....+++
T Consensus 91 ~v~g~AaS~g~~Ia~agd~~~~~a~p~-a~igih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~ 169 (208)
T 2cby_A 91 YAMGMAASMGEFLLAAGTKGKRYALPH-ARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADS 169 (208)
T ss_dssp EEEEEEETHHHHHHHTSCTTCEEECTT-CEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred EECcEeHHHHHHHHhCCCcCCEEEcCC-cEEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 9999999999999999998 999998 778766544222000 000 0113334441 33345678
Q ss_pred hcCcCCCHHHHHHcCcchhccCCHhHHHHHHHH
Q 026127 168 LRAKKIKGEEALRMGLVEAAYDSEEQVAEASMR 200 (243)
Q Consensus 168 l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~ 200 (243)
..|.-|+++||+++||||+|.++.+++.+...+
T Consensus 170 ~~~~~~ta~eA~e~GLvD~i~~~~~~ll~~~~~ 202 (208)
T 2cby_A 170 DRDRWFTAAEALEYGFVDHIITRAHVNGEAQLE 202 (208)
T ss_dssp HTTCEEEHHHHHHHTSCSEECSCC---------
T ss_pred hCCcEEcHHHHHHcCCCcEecCchHHHHHHHHH
Confidence 889999999999999999999876666655443
|
| >1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A | Back alignment and structure |
|---|
Probab=99.00 E-value=3.6e-09 Score=84.46 Aligned_cols=139 Identities=15% Similarity=0.084 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVA 105 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 105 (243)
++..+...+.+.|..++.++.++ .|++. .=|.|+++.. ...++..|..+++||++
T Consensus 35 I~~~~a~~i~~~L~~l~~~~~~~-~I~l~----InSPGG~v~a--------------------~~~I~~~i~~~~~pV~~ 89 (193)
T 1yg6_A 35 VEDHMANLIVAQMLFLEAENPEK-DIYLY----INSPGGVITA--------------------GMSIYDTMQFIKPDVST 89 (193)
T ss_dssp BCHHHHHHHHHHHHHHHHHCSSS-CEEEE----EEECCBCHHH--------------------HHHHHHHHHHSSSCEEE
T ss_pred EcHHHHHHHHHHHHHHHhcCCCC-CEEEE----EECcCCCHHH--------------------HHHHHHHHHhcCCCEEE
Confidence 78889999999999998776667 55552 2455665432 23466667778899999
Q ss_pred EEccccchHHHHHHHhcce--eEEecCCceeeccccccCcC--CChhhH-------------HHHHHHhCC-HHHHHHHH
Q 026127 106 AVNGHAAAAGLTLALSHDY--VIMRRDKGVLYMSEVDIGLT--LPDYFA-------------ALFRAKVGS-ATARRDVL 167 (243)
Q Consensus 106 av~G~~~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~--~p~~g~-------------~~l~~~~g~-~~~a~~l~ 167 (243)
.+.|.|.++|.-++++||. |++.++ +.+++.....|.. ..+... ..+.+..|. .....+++
T Consensus 90 ~v~g~AaS~g~~Ia~ag~~~~r~a~p~-s~i~ih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~ 168 (193)
T 1yg6_A 90 ICMGQAASMGAFLLTAGAKGKRFCLPN-SRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDT 168 (193)
T ss_dssp EEEEEEETHHHHHHHTSCTTCEEECTT-CEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHT
T ss_pred EEeeeHHHHHHHHHHCCCcCcEEEecC-cEEEEEeccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence 9999999999999999999 999998 7777654433320 011110 012233331 23334444
Q ss_pred hcCcCCCHHHHHHcCcchhccCC
Q 026127 168 LRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 168 l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
-.+.-|+++||+++||||++..+
T Consensus 169 ~~~~~~ta~eA~~~GliD~i~~~ 191 (193)
T 1yg6_A 169 ERDRFLSAPEAVEYGLVDSILTH 191 (193)
T ss_dssp SSCEEEEHHHHHHHTSSSEECCC
T ss_pred cCCeEEcHHHHHHcCCCCEecCC
Confidence 33455799999999999999875
|
| >3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.5e-08 Score=81.23 Aligned_cols=139 Identities=14% Similarity=0.097 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVA 105 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 105 (243)
++.++...+...|..++.++..+ .|++. .=|.|+++.. ...++..|..+++||++
T Consensus 36 I~~~~a~~i~~~L~~l~~~~~~~-~I~l~----InSPGG~v~~--------------------~~~I~~~i~~~~~~V~t 90 (203)
T 3qwd_A 36 IDDNVANSIVSQLLFLQAQDSEK-DIYLY----INSPGGSVTA--------------------GFAIYDTIQHIKPDVQT 90 (203)
T ss_dssp BCHHHHHHHHHHHHHHHHHCSSS-CEEEE----EEECCBCHHH--------------------HHHHHHHHHHSSSCEEE
T ss_pred ECHHHHHHHHHHHHHHHhcCCCC-CEEEE----EeCCCCCHHH--------------------HHHHHHHHHHhcCCcEE
Confidence 88999999999999999876666 44442 2345554432 23456667778999999
Q ss_pred EEccccchHHHHHHHhcc--eeEEecCCceeeccccccCcC--CChhhH-------------HHHHHHhC-CHHHHHHHH
Q 026127 106 AVNGHAAAAGLTLALSHD--YVIMRRDKGVLYMSEVDIGLT--LPDYFA-------------ALFRAKVG-SATARRDVL 167 (243)
Q Consensus 106 av~G~~~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl~--~p~~g~-------------~~l~~~~g-~~~~a~~l~ 167 (243)
.+.|.|.++|..++++|| .|++.++ +.+.+....-|.. ..+.-. ..+.++-| ......+++
T Consensus 91 ~~~G~AaSag~~i~~ag~~g~r~~~p~-a~imiHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~~e~i~~~~ 169 (203)
T 3qwd_A 91 ICIGMAASMGSFLLAAGAKGKRFALPN-AEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDT 169 (203)
T ss_dssp EEEEEEETHHHHHHHTSCTTCEEECTT-CEEECCCCSSSTTTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred EEeeeehhHHHHHHHcCCcCeEEEcCC-ceEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence 999999999999999999 6999998 7787644332220 111110 01223333 133344555
Q ss_pred hcCcCCCHHHHHHcCcchhccCC
Q 026127 168 LRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 168 l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
-...-++|+||+++||||+|..+
T Consensus 170 ~~d~~lta~EA~e~GliD~I~~~ 192 (203)
T 3qwd_A 170 DRDNFLTAEEAKEYGLIDEVMVP 192 (203)
T ss_dssp TSCCCEEHHHHHHHTSCSEECCC
T ss_pred hcCceecHHHHHHcCCcCEecCC
Confidence 44566899999999999999987
|
| >2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=8.1e-09 Score=83.66 Aligned_cols=138 Identities=9% Similarity=-0.012 Sum_probs=92.5
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVA 105 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 105 (243)
++..+...+...|..++.++. + .|++. .=|.|+++.. ...++..|..+++||++
T Consensus 48 I~~~~a~~i~~~L~~l~~~~~-k-~I~l~----INSPGGsv~a--------------------~~~I~~~i~~~~~pV~t 101 (215)
T 2f6i_A 48 INKKTADELISQLLYLDNINH-N-DIKIY----INSPGGSINE--------------------GLAILDIFNYIKSDIQT 101 (215)
T ss_dssp BCHHHHHHHHHHHHHHHHHCC-S-CEEEE----EEECCBCHHH--------------------HHHHHHHHHHSSSCEEE
T ss_pred ECHHHHHHHHHHHHHHHhCCC-C-cEEEE----EECCCCCHHH--------------------HHHHHHHHHhcCCCEEE
Confidence 788889999999998876655 6 45442 2355554432 23466667788899999
Q ss_pred EEccccchHHHHHHHhcce--eEEecCCceeeccccccCcC--CChhh--HH-----------HHHHHhCC-HHHHHHHH
Q 026127 106 AVNGHAAAAGLTLALSHDY--VIMRRDKGVLYMSEVDIGLT--LPDYF--AA-----------LFRAKVGS-ATARRDVL 167 (243)
Q Consensus 106 av~G~~~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~--~p~~g--~~-----------~l~~~~g~-~~~a~~l~ 167 (243)
.+.|.|.++|.-++++||. |++.++ +.+.+.....|.. ..+.. .. .+.+..|. .....+++
T Consensus 102 ~v~g~AAS~g~~Ia~agd~g~i~a~p~-s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~~e~i~~~~ 180 (215)
T 2f6i_A 102 ISFGLVASMASVILASGKKGKRKSLPN-CRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDS 180 (215)
T ss_dssp EEEEEECHHHHHHHHTSCTTCEEECTT-CEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred EEeeEhHhHHHHHHHcCCcccEEEcCC-CEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 9999999999999999999 999998 7777654433320 01111 00 11222231 33444444
Q ss_pred hcCcCCCHHHHHHcCcchhccCC
Q 026127 168 LRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 168 l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
-.+.-++++||+++||||+|.++
T Consensus 181 ~~~~~lta~eA~e~GLiD~I~~~ 203 (215)
T 2f6i_A 181 DRDYYMNALEAKQYGIIDEVIET 203 (215)
T ss_dssp HTTCEECHHHHHHHTSCSEECCC
T ss_pred hCCeecCHHHHHHCCCCCEecCC
Confidence 43445699999999999999976
|
| >3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=3.8e-09 Score=84.67 Aligned_cols=143 Identities=14% Similarity=0.070 Sum_probs=95.2
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVA 105 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 105 (243)
++.++...+...+..++.++..+ .|++. .=|.|+++.. ...++..|..+++||++
T Consensus 39 I~~~~a~~i~~~L~~l~~~~~~~-~I~l~----INSpGG~v~~--------------------~~~I~~~i~~~~~~v~t 93 (201)
T 3p2l_A 39 VNDHSANLVIAQLLFLESEDPDK-DIYFY----INSPGGMVTA--------------------GMGVYDTMQFIKPDVST 93 (201)
T ss_dssp BCHHHHHHHHHHHHHHHHHCSSS-CEEEE----EEECCBCHHH--------------------HHHHHHHHHHSSSCEEE
T ss_pred ECHHHHHHHHHHHHHHHhcCCCC-CEEEE----EECCCCCHHH--------------------HHHHHHHHHHhCCCeEE
Confidence 88899999999999998776566 44442 2355555432 23466677788999999
Q ss_pred EEccccchHHHHHHHhcce--eEEecCCceeeccccccCcC--CChhh-------------HHHHHHHhCC-HHHHHHHH
Q 026127 106 AVNGHAAAAGLTLALSHDY--VIMRRDKGVLYMSEVDIGLT--LPDYF-------------AALFRAKVGS-ATARRDVL 167 (243)
Q Consensus 106 av~G~~~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~--~p~~g-------------~~~l~~~~g~-~~~a~~l~ 167 (243)
.+.|.|.++|..+++++|. |++.++ +.+.+....-|.. ..+.. ...+.++.|. .....+++
T Consensus 94 ~~~G~AaS~g~~i~~ag~~g~r~~~p~-a~imiH~p~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~e~i~~~~ 172 (201)
T 3p2l_A 94 ICIGLAASMGSLLLAGGAKGKRYSLPS-SQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDT 172 (201)
T ss_dssp EEEEEEETHHHHHHHTSSTTCEEECTT-CEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHT
T ss_pred EEcCEehhHHHHHHHcCccCCEEEcCC-CeEEEeccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHh
Confidence 9999999999999999998 999998 7776655442220 01100 0011223331 22333343
Q ss_pred hcCcCCCHHHHHHcCcchhccCCHhHH
Q 026127 168 LRAKKIKGEEALRMGLVEAAYDSEEQV 194 (243)
Q Consensus 168 l~g~~~~a~eA~~~Glv~~v~~~~~~l 194 (243)
-...-++|+||+++||||+|+++.++|
T Consensus 173 ~~~~~lta~EA~e~GliD~I~~~~~~l 199 (201)
T 3p2l_A 173 DRDNFMMADEAKAYGLIDHVIESREAI 199 (201)
T ss_dssp SSCEEEEHHHHHHHTSCSEECCCSCC-
T ss_pred hcCeeecHHHHHHcCCccEecCCHHHh
Confidence 333446999999999999999875544
|
| >1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-08 Score=84.79 Aligned_cols=145 Identities=12% Similarity=0.084 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVA 105 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 105 (243)
++.++...+...|..++.++..+ .|++. .=|.|+++.. ...++..|...++||++
T Consensus 91 I~d~~a~~iiaqL~~l~~ed~~k-~I~L~----INSPGGsV~a--------------------g~aIyd~I~~~k~pV~t 145 (277)
T 1tg6_A 91 IDDSVASLVIAQLLFLQSESNKK-PIHMY----INSPGGVVTA--------------------GLAIYDTMQYILNPICT 145 (277)
T ss_dssp BCHHHHHHHHHHHHHHHHHCSSS-CEEEE----EEECCBCHHH--------------------HHHHHHHHHHSCSCEEE
T ss_pred ECHHHHHHHHHHHHHHHhcCCCC-CEEEE----EECCCCCHHH--------------------HHHHHHHHHhcCCCEEE
Confidence 78889999999999887655556 55552 2455554432 23356667778899999
Q ss_pred EEccccchHHHHHHHhcce--eEEecCCceeeccccccCcCCC--hhhH-------------HHHHHHhCC-HHHHHHHH
Q 026127 106 AVNGHAAAAGLTLALSHDY--VIMRRDKGVLYMSEVDIGLTLP--DYFA-------------ALFRAKVGS-ATARRDVL 167 (243)
Q Consensus 106 av~G~~~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~~p--~~g~-------------~~l~~~~g~-~~~a~~l~ 167 (243)
.+.|.|..+|..++++||. |++.++ +.+.......|..-. +... ..+.+..|. .....+++
T Consensus 146 ~v~G~AASaG~~Ia~Agd~gkr~a~P~-S~ImihqP~~g~~G~a~Di~~~a~ei~~~~~~~~~i~a~~tG~~~e~i~~~~ 224 (277)
T 1tg6_A 146 WCVGQAASMGSLLLAAGTPGMRHSLPN-SRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAM 224 (277)
T ss_dssp EEEEEEETHHHHHHHTSCTTCEEECTT-CEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred EEccEeHHHHHHHHHCCCcCCEEEecC-CEEEEecccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999999998 999998 777765443332101 1100 011222231 23334444
Q ss_pred hcCcCCCHHHHHHcCcchhccCCHhHHHH
Q 026127 168 LRAKKIKGEEALRMGLVEAAYDSEEQVAE 196 (243)
Q Consensus 168 l~g~~~~a~eA~~~Glv~~v~~~~~~l~~ 196 (243)
-.+.-|+++||+++||||+|..+.+++.+
T Consensus 225 drd~~lta~EAle~GLID~I~~~~~~~~~ 253 (277)
T 1tg6_A 225 ERDRYMSPMEAQEFGILDKVLVHPPQDGE 253 (277)
T ss_dssp SSCEEECHHHHHHHTSCSEECSSCC----
T ss_pred hcCcccCHHHHHHCCCCCEecCcchhhcc
Confidence 44556799999999999999976554433
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.1e-06 Score=76.57 Aligned_cols=207 Identities=18% Similarity=0.151 Sum_probs=145.8
Q ss_pred eEeCcEEEEEEcCCCCCCC-----------CCCCHHHHHHHHHHHHHHH-hcCCCCeEEEEecCCCcccCCCChhhHHh-
Q 026127 5 EKHGDVFVLTLTGSSDVDE-----------HRFGPPAIDSILSAIAKAK-AEATPGSALITTSHGKFFSNGFDLAWAQA- 71 (243)
Q Consensus 5 ~~~~~v~~i~ln~p~~~~~-----------N~l~~~~~~~l~~~l~~~~-~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~- 71 (243)
++..+++.++...|...+. +.....|.+||.+++..+. ++.++. .+++...|.. .....
T Consensus 273 ~ra~r~a~~~~~g~~~a~~~~ld~i~aa~~~~~~l~~~~el~~All~l~~ne~~~~-~~~~~t~g~~-------~~~~~~ 344 (556)
T 2w3p_A 273 DRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVG-TWVFRTEGDA-------RHLLAA 344 (556)
T ss_dssp ETTTTEEEEEEECCSSCCCCSHHHHHHHGGGSHHHHHHHHHHHHHHHHHHHCSSCC-EEEEEEESCH-------HHHHHH
T ss_pred HHHHHHHHHHhcCCCCCchhhHHHHHHhhhcchhhhhhhHHHHHHHhhhhccHHHh-HhhhhccCCH-------HHHhhh
Confidence 3445788888887752112 2233557889977777666 577887 7776665533 32211
Q ss_pred --cCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEc-cccchHH-HHHHHhcceeEEec---C---Cceeecccccc
Q 026127 72 --AGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVN-GHAAAAG-LTLALSHDYVIMRR---D---KGVLYMSEVDI 141 (243)
Q Consensus 72 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~-G~~~G~G-~~la~~~D~~ia~~---~---~~~f~~pe~~~ 141 (243)
......+....++....+++.+.++--.+.-+++.|. |.|+.|- ++|+++||..|+-+ + ...+.+.+.++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (556)
T 2w3p_A 345 DASLMQHKDHWFVRETIGLLRRTLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEVNF 424 (556)
T ss_dssp HHHHHHTTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEECTTCCEEGGGHHHHHTSSEEEECCCTTCTTTSCCEECCGGGG
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhcccchhheeeecCCcchHHHHHHHHHHhhhhhhhcCCCCCCCCceeEeecccc
Confidence 0000112445677788889999999999999999996 9996555 69999999999864 1 35788999999
Q ss_pred CcCCChhh-HHHHHHHhCCHHHHHH--HHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHH
Q 026127 142 GLTLPDYF-AALFRAKVGSATARRD--VLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEI 218 (243)
Q Consensus 142 Gl~~p~~g-~~~l~~~~g~~~~a~~--l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~ 218 (243)
|. +|-.. ..+|.+++-....... -...|+++++++|.++|||+-..++ -+.+++.+-..++-++.+ |.++-.+
T Consensus 425 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~ 500 (556)
T 2w3p_A 425 GL-YPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPDD-IDWADEIRIALEERAAMS--PDALTGL 500 (556)
T ss_dssp TT-SCCTTSSCHHHHHTTTCHHHHHHHHTTTTSCBCHHHHHHTTSSSBCCCT-TTHHHHHHHHHHHHHHSC--HHHHHHH
T ss_pred Cc-ccCCCchhHHHHHhcCCcchHHHHHHHhCCCCCHHHHHhcCCeecCccc-CChHHHHHHHHHHHhccC--cchhccc
Confidence 99 78664 4577777531221111 1345999999999999999988887 578999999999999988 7788766
Q ss_pred HHHHh
Q 026127 219 RKSLC 223 (243)
Q Consensus 219 k~~l~ 223 (243)
...++
T Consensus 501 ~~~~~ 505 (556)
T 2w3p_A 501 EANLR 505 (556)
T ss_dssp HHHHS
T ss_pred hhhcc
Confidence 65553
|
| >4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A | Back alignment and structure |
|---|
Probab=98.46 E-value=2.9e-06 Score=67.86 Aligned_cols=144 Identities=15% Similarity=0.157 Sum_probs=91.7
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCe-EEEEecCCCcc----cCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCC
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGS-ALITTSHGKFF----SNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLP 100 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~-~vvl~g~g~~F----~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (243)
++.++...+...|..++.++..+- .+.|-+.|..- ..-+++. ....++..|...+
T Consensus 37 I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v~--------------------aglaIyd~m~~~~ 96 (205)
T 4gm2_A 37 IYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGIT--------------------DVISIVDVINYIS 96 (205)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHHH--------------------HHHHHHHHHHHSS
T ss_pred EcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCHH--------------------HHHHHHHHHHhcC
Confidence 899999999999998886432231 34454433110 0002222 2345677778889
Q ss_pred CcEEEEEccccchHHHHHHHhcc--eeEEecCCceeeccccccCc-C--CChhh--HH-----------HHHHHhCC-HH
Q 026127 101 MPTVAAVNGHAAAAGLTLALSHD--YVIMRRDKGVLYMSEVDIGL-T--LPDYF--AA-----------LFRAKVGS-AT 161 (243)
Q Consensus 101 kp~Iaav~G~~~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl-~--~p~~g--~~-----------~l~~~~g~-~~ 161 (243)
.||...+-|.|.+.|..|++++| .|++.++ +++-+-....|. . ..+.- .. .+.++-|. ..
T Consensus 97 ~~V~t~~~G~AaS~as~il~aG~~gkR~~lP~-a~iMIHqP~~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e 175 (205)
T 4gm2_A 97 SDVYTYCLGKAYGIACILASSGKKGYRFSLKN-SSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTN 175 (205)
T ss_dssp SCEEEEEEEEEETHHHHHHTTSCTTCEEECTT-CEEEECCCCCCCCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHTCCHH
T ss_pred CCEEEEEEeeehhHHHHHHhcCCCCCEEecCC-CEEEEecCcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999 5999998 677654443332 0 22221 00 11222221 22
Q ss_pred HHHHHHhcCcCCCHHHHHHcCcchhccCC
Q 026127 162 ARRDVLLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
...+++-...-++|+||+++||||+|+.+
T Consensus 176 ~I~~~m~rd~~msa~EA~eyGlID~V~~~ 204 (205)
T 4gm2_A 176 VISNVLERDKYFNADEAVDFKLIDHILEK 204 (205)
T ss_dssp HHHHHTTSCEEEEHHHHHHTTSCSEECCC
T ss_pred HHHHHhcCCcccCHHHHHHcCCccEeecC
Confidence 22344444455999999999999999976
|
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A | Back alignment and structure |
|---|
Probab=98.44 E-value=2.4e-06 Score=79.08 Aligned_cols=86 Identities=15% Similarity=0.131 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCC-CChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEc
Q 026127 30 AIDSILSAIAKAKAEATPGSALITTSHGKFFSNG-FDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVN 108 (243)
Q Consensus 30 ~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G-~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~ 108 (243)
....+.+.|+.+.+|+.++ .|++.-. |.| +++.... .+++.+..+....|||||.++
T Consensus 71 ~~~~i~~~L~~a~~d~~ik-~I~L~in----spGgG~v~~~~-----------------~I~~~i~~~k~~gkpvva~~~ 128 (593)
T 3bf0_A 71 SLFDIVNTIRQAKDDRNIT-GIVMDLK----NFAGGDQPSMQ-----------------YIGKALKEFRDSGKPVYAVGE 128 (593)
T ss_dssp EHHHHHHHHHHHHHCTTCC-CEEEECT----EEEECCHHHHH-----------------HHHHHHHHHHHTTCCEEEEES
T ss_pred CHHHHHHHHHHHHhCCCce-EEEEEeC----CCCCCcHHHHH-----------------HHHHHHHHHHhcCCeEEEEEc
Confidence 5678899999999999999 7888543 445 5554432 234455555556799999987
Q ss_pred cccchHHHHHHHhcceeEEecCCceeecccc
Q 026127 109 GHAAAAGLTLALSHDYVIMRRDKGVLYMSEV 139 (243)
Q Consensus 109 G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~ 139 (243)
+ +..+|+-|+++||.+++.+. +.++....
T Consensus 129 ~-aas~~y~lAsaad~i~~~P~-~~vg~~g~ 157 (593)
T 3bf0_A 129 N-YSQGQYYLASFANKIWLSPQ-GVVDLHGF 157 (593)
T ss_dssp C-EEHHHHHHHTTSSEEEECTT-CCEECCCC
T ss_pred c-chhHHHHHHHhCCEEEECCC-ceEEEecc
Confidence 6 67888999999999999998 66664433
|
| >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A | Back alignment and structure |
|---|
Probab=98.35 E-value=2.8e-05 Score=70.55 Aligned_cols=144 Identities=17% Similarity=0.212 Sum_probs=98.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026127 23 EHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMP 102 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 102 (243)
.-++.....+.+..+++.+.+..-+ +|.+..+| |..+.+- ...+..+.+.+..+.+ +.. -.|
T Consensus 110 gGS~g~~~~~Ki~ra~e~A~~~~lP--~I~l~dSg-----GaRmqEg---------~~~l~~~~~i~~~~~~-~s~-~iP 171 (530)
T 3iav_A 110 GGALGEVYGQKIVKVMDFALKTGCP--VVGINDSG-----GARIQEG---------VASLGAYGEIFRRNTH-ASG-VIP 171 (530)
T ss_dssp GGCBCHHHHHHHHHHHHHHHHHTCC--EEEEECCC-----SBCGGGT---------HHHHHHHHHHHHHHHH-TTT-TSC
T ss_pred eEeccHHHHHHHHHHHHHHHHcCCC--EEEEEcCC-----Ccchhhh---------hhhHHHHHHHHHHHHH-HcC-CCC
Confidence 4689999999999999999987655 55555433 3333221 1222233333343332 333 399
Q ss_pred EEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHH----
Q 026127 103 TVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEA---- 178 (243)
Q Consensus 103 ~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA---- 178 (243)
+|++|.|+|.||+......||++|++++.+.+.+ + | +...+ ..+|+.+++++.
T Consensus 172 ~Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~~-------a-------------G-P~vi~--~~~ge~v~~e~LGGa~ 228 (530)
T 3iav_A 172 QISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFI-------T-------------G-PDVIK--TVTGEDVGFEELGGAR 228 (530)
T ss_dssp EEEEECSEEEGGGGHHHHHSSEEEEETTTCEEES-------S-------------C-HHHHH--HHHCCCCCHHHHHBHH
T ss_pred EEEEEecCcchHHHHHHHhCCEEEEecCCcEEEe-------c-------------C-HHHHH--HHhCCcCChhhcchHH
Confidence 9999999999999988889999999987455543 1 2 33222 236788888775
Q ss_pred ---HHcCcchhccCCHhHHHHHHHHHHHHHhc
Q 026127 179 ---LRMGLVEAAYDSEEQVAEASMRLAKQLAG 207 (243)
Q Consensus 179 ---~~~Glv~~v~~~~~~l~~~a~~~a~~l~~ 207 (243)
...|++|.++++.++..+.++++...+-.
T Consensus 229 ~h~~~sGv~d~va~de~~a~~~~r~~ls~lp~ 260 (530)
T 3iav_A 229 THNSTSGVAHHMAGDEKDAVEYVKQLLSYLPS 260 (530)
T ss_dssp HHHHTSCCCSEEESSHHHHHHHHHHHHHHSCS
T ss_pred HHHhccCceeEEecChHHHHHHHHHHHHhccc
Confidence 68999999999855677777777776633
|
| >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.1e-05 Score=69.45 Aligned_cols=142 Identities=16% Similarity=0.254 Sum_probs=94.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026127 23 EHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMP 102 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 102 (243)
.-++.....+.+..+++.+.+..-+ +|.+..+| |..+.+- ...+..+.+.+....+ + .-..|
T Consensus 118 gGS~g~~~~~Ki~ra~e~A~~~~lP--vI~l~dSG-----GARmqeg---------~~sl~~~~~i~~~~~~-~-s~~iP 179 (531)
T 3n6r_B 118 GGSVSETHSKKICKIMDMAMQNGAP--VIGINDSG-----GARIQEG---------VDSLAGYGEVFQRNIM-A-SGVVP 179 (531)
T ss_dssp GGCBCHHHHHHHHHHHHHHHHHTCC--EEEEECCC-----CBCGGGT---------HHHHHHHHHHHHHHHH-T-TTTSC
T ss_pred cccccHHHHHHHHHHHHHHHHcCCC--EEEEeCCC-----ccccCcc---------cchhhhHHHHHHHHHH-H-hCCCC
Confidence 4589999999999999999887665 45555433 3333321 1112223333333332 2 24599
Q ss_pred EEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHH----
Q 026127 103 TVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEA---- 178 (243)
Q Consensus 103 ~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA---- 178 (243)
+|+++.|+|.|||......||++|+.++.+.+ |++ | +...+ ..+|+.+++++.
T Consensus 180 ~Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a~i-------~~a-------------G-P~vI~--~~~ge~v~~E~LGGa~ 236 (531)
T 3n6r_B 180 QISMIMGPCAGGAVYSPAMTDFIFMVKDSSYM-------FVT-------------G-PDVVK--TVTNEQVSAEELGGAT 236 (531)
T ss_dssp EEEEECSCCBGGGGHHHHHSSEEEEETTTCBC-------BSS-------------C-HHHHH--HHHCCCCCHHHHHBHH
T ss_pred EEEEEeCCcchHHHHHhhhCCEEEEecCCceE-------eec-------------C-HHHHH--HHhCCccChhhcchHH
Confidence 99999999999999888889999999864443 332 2 22222 236888999998
Q ss_pred ---HHcCcchhccCCHhHHHHHHHHHHHHH
Q 026127 179 ---LRMGLVEAAYDSEEQVAEASMRLAKQL 205 (243)
Q Consensus 179 ---~~~Glv~~v~~~~~~l~~~a~~~a~~l 205 (243)
.+.|++|.++++.++..+.++++...+
T Consensus 237 ~h~~~sG~~d~v~~~e~~a~~~~r~lls~L 266 (531)
T 3n6r_B 237 THTRKSSVADAAFENDVEALAEVRRLVDFL 266 (531)
T ss_dssp HHHHTTSCCSEEESSHHHHHHHHHHHHTTS
T ss_pred HHhhccCcceEEeCCHHHHHHHHHHHHHhc
Confidence 899999999998555555555555444
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=98.27 E-value=4.6e-06 Score=76.65 Aligned_cols=160 Identities=18% Similarity=0.169 Sum_probs=103.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026127 23 EHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMP 102 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 102 (243)
.-++.....+.+..+++.+.+..-+ +|.+.. |.|..+.+-..... . .. .+.+ +..-...+....+|
T Consensus 118 gGs~g~~~~~Ki~r~~e~A~~~~lP--vI~l~d-----SgGArlqe~~~~l~-~--~~---~~g~-i~~~~~~ls~~giP 183 (587)
T 1pix_A 118 AGAWVPGQAECLLRASDTAKTLHVP--LVYVLN-----CSGVKFDEQEKVYP-N--RR---GGGT-PFFRNAELNQLGIP 183 (587)
T ss_dssp TTEECTTHHHHHHHHHHHHHHHTCC--EEEEEC-----CCEECGGGHHHHSS-S--TT---STTH-HHHHHHHHHHTTCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCC--EEEEEe-----CCCCCccccchhcc-c--cc---cHHH-HHHHHHHHhCCCCC
Confidence 3588889999999999999987665 454444 44555544322100 0 00 0111 22234556678999
Q ss_pred EEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHH-HHHHHhCCHHHHHHHH-hcCcCCCHHH---
Q 026127 103 TVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAA-LFRAKVGSATARRDVL-LRAKKIKGEE--- 177 (243)
Q Consensus 103 ~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~-~l~~~~g~~~~a~~l~-l~g~~~~a~e--- 177 (243)
+|++|.|+|.|||... ..||++|++++.+++++. -|..--. .-.-.++ ...+.+++ .+|+.+++++
T Consensus 184 ~Isvv~G~~~GGga~~-a~~d~vim~e~~a~i~~~-------GP~vi~~~~~~~~~d-~~~A~el~~~tge~v~~e~lgg 254 (587)
T 1pix_A 184 VIVGIYGTNPAGGGYH-SISPTVIIAHEKANMAVG-------GAGIMGGMNPKGHVD-LEYANEIADMVDRTGKTEPPGA 254 (587)
T ss_dssp EEEEECSEEETHHHHH-HHSSSEEEEETTCEEESC-------CCTTCCSCCSSSSCC-HHHHHHHHHHHHTTCCCCCSSB
T ss_pred EEEEEecCCcHHHHHH-HhcCceEEecCCcEEEec-------CHHHHhhhccccccc-hhHHHHHHHHhCCccChhhccc
Confidence 9999999999999999 999999998864666542 2221100 0001266 78888998 8888887655
Q ss_pred --H--HHcCcchhccCCHhHHHHHHHHHHHHH
Q 026127 178 --A--LRMGLVEAAYDSEEQVAEASMRLAKQL 205 (243)
Q Consensus 178 --A--~~~Glv~~v~~~~~~l~~~a~~~a~~l 205 (243)
. .+.|++|.++++.++..+.++++...+
T Consensus 255 a~~h~~~~GvvD~vv~~e~~a~~~~r~~ls~l 286 (587)
T 1pix_A 255 VDIHYTETGFMREVYASEEGVLEGIKKYVGML 286 (587)
T ss_dssp HHHHTTTSCCSCEEESSHHHHHHHHHHHHHTS
T ss_pred HHHHHhhcCceeEecCCHHHHHHHHHHHHHhC
Confidence 2 369999999998544555555554433
|
| >2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.18 E-value=9.5e-05 Score=62.09 Aligned_cols=145 Identities=10% Similarity=0.039 Sum_probs=93.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026127 24 HRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPT 103 (243)
Q Consensus 24 N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ 103 (243)
-+++....+.+.++++.+.+..-+ +|.+...|++ -..+- ...+.+ .......+.++.....|.
T Consensus 135 Gs~g~~~~~K~~r~ie~A~~~~lP--lI~l~dsgGa-----r~qEG---------i~sl~q-~aki~~~l~~~s~~~vP~ 197 (285)
T 2f9i_B 135 GSMGSVIGEKICRIIDYCTENRLP--FILFSASGGA-----RMQEG---------IISLMQ-MGKTSVSLKRHSDAGLLY 197 (285)
T ss_dssp GCCCHHHHHHHHHHHHHHHHTTCC--EEEEEEECSC-----CGGGH---------HHHHHH-HHHHHHHHHHHHHTTCCE
T ss_pred CcCCHHHHHHHHHHHHHHHHcCCC--EEEEEeCCCc-----chhhh---------hhhHhH-HHHHHHHHHHHHcCCCCE
Confidence 589999999999999999987665 4555443332 22210 111111 123344566777789999
Q ss_pred EEEEccccchHHHHH-HHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcC
Q 026127 104 VAAVNGHAAAAGLTL-ALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMG 182 (243)
Q Consensus 104 Iaav~G~~~G~G~~l-a~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~G 182 (243)
|+.+-|+|.||+... ++.+|++++.++ +.++ +.-|......+-+.++ -.--+|+.+.+.|
T Consensus 198 Isvv~g~~~GG~~as~a~~~D~i~a~p~-A~i~-------~aGP~vi~~~~~~~~~-----------e~~~~Ae~~~~~G 258 (285)
T 2f9i_B 198 ISYLTHPTTGGVSASFASVGDINLSEPK-ALIG-------FAGRRVIEQTINEKLP-----------DDFQTAEFLLEHG 258 (285)
T ss_dssp EEEEEEEEEHHHHTTGGGCCSEEEECTT-CBEE-------SSCHHHHHHHHTSCCC-----------TTTTBHHHHHHTT
T ss_pred EEEEeCCccHHHHHHhhhCCCEEEEeCC-cEEE-------EcCHHHHHHHhcccch-----------HhHhhHHHHHhcC
Confidence 999999999999544 789999999877 6554 3234433222221111 0112477788999
Q ss_pred cchhccCCHhHHHHHHHHHHHHH
Q 026127 183 LVEAAYDSEEQVAEASMRLAKQL 205 (243)
Q Consensus 183 lv~~v~~~~~~l~~~a~~~a~~l 205 (243)
+||.|+++ +++.+...++...+
T Consensus 259 ~iD~Iv~~-~e~r~~l~~~L~~l 280 (285)
T 2f9i_B 259 QLDKVVHR-NDMRQTLSEILKIH 280 (285)
T ss_dssp CCSEECCG-GGHHHHHHHHHHHT
T ss_pred CccEEeCh-HHHHHHHHHHHHHh
Confidence 99999997 56666666655544
|
| >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00017 Score=65.51 Aligned_cols=142 Identities=17% Similarity=0.247 Sum_probs=95.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026127 23 EHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMP 102 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 102 (243)
.-++.....+.+..+++.+.++.-+ +|.+.. |.|..+.+-. ..+.++.+.+..+.. + .-..|
T Consensus 108 gGS~g~~~~~Ki~ra~e~A~~~~lP--~I~l~~-----SGGARmqeg~---------~sl~~~~~i~~~~~~-~-s~~iP 169 (523)
T 1on3_A 108 GGSAGETQSTKVVETMEQALLTGTP--FLFFYD-----SGGARIQEGI---------DSLSGYGKMFFANVK-L-SGVVP 169 (523)
T ss_dssp GGCBCHHHHHHHHHHHHHHHHHTCC--EEEEEE-----ECSBCGGGTH---------HHHHHHHHHHHHHHH-H-TTTSC
T ss_pred CCcCcHHHHHHHHHHHHHHHHcCCC--EEEEEc-----CCCCChhhHH---------HHHHHHHHHHHHHHH-h-cCCCC
Confidence 4589999999999999999987665 455544 4455554322 122233444444442 2 34599
Q ss_pred EEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHH-----H
Q 026127 103 TVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGE-----E 177 (243)
Q Consensus 103 ~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~-----e 177 (243)
+|+++.|+|.||+......||++|+.++ +.++ ++-| ...+. .+|+.++.+ |
T Consensus 170 ~Isvv~gp~~GG~a~s~~l~D~ii~~~~-a~i~-------~aGP--------------~vI~~--~~ge~~~~e~lggae 225 (523)
T 1on3_A 170 QIAIIAGPCAGGASYSPALTDFIIMTKK-AHMF-------ITGP--------------QVIKS--VTGEDVTADELGGAE 225 (523)
T ss_dssp EEEEEEEEEESGGGHHHHHSSEEEEETT-CEEE-------SSCH--------------HHHHH--HHCCCCCHHHHHSHH
T ss_pred EEEEEcCCCchHHHHHHhhCCeEEEeCC-CEEE-------ecCH--------------HHHHH--HhCCcCChHhcccHH
Confidence 9999999999999999999999999988 6554 3222 22221 246666653 3
Q ss_pred HH--HcCcchhccCCHhHHHHHHHHHHHHHh
Q 026127 178 AL--RMGLVEAAYDSEEQVAEASMRLAKQLA 206 (243)
Q Consensus 178 A~--~~Glv~~v~~~~~~l~~~a~~~a~~l~ 206 (243)
.+ +.|++|.++++..++.+.+.++...+-
T Consensus 226 ~h~~~~G~vd~vv~d~~~~~~~~r~lL~~lp 256 (523)
T 1on3_A 226 AHMAISGNIHFVAEDDDAAELIAKKLLSFLP 256 (523)
T ss_dssp HHHHTTCCCSEEESSHHHHHHHHHHHHHTSC
T ss_pred HHhhccCceEEEeCCHHHHHHHHHHHHHhcC
Confidence 33 699999999985567777766665554
|
| >1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00034 Score=63.60 Aligned_cols=144 Identities=19% Similarity=0.235 Sum_probs=97.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026127 23 EHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMP 102 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 102 (243)
.-++.....+.+..+++.+.+..-+ +|.+.. |.|..+.+-. ..+.++.+.+..+.. + .-..|
T Consensus 104 gGS~g~~~~~Ki~ra~e~A~~~~~P--~I~l~~-----SGGaRmqeg~---------~sl~~~~~i~~~~~~-~-s~~iP 165 (522)
T 1x0u_A 104 GGSLGETHANKIVRAYELALKVGAP--VVGIND-----SGGARIQEGA---------LSLEGYGAVFKMNVM-A-SGVIP 165 (522)
T ss_dssp GGCBCHHHHHHHHHHHHHHHHHTCC--EEEEEC-----CCSBCGGGTH---------HHHHHHHHHHHHHHH-H-TTTSC
T ss_pred CccccHHHHHHHHHHHHHHHHcCCC--EEEEEc-----CCCCChhHHH---------HHHHHHHHHHHHHHH-h-CCCCc
Confidence 4589999999999999999987655 566655 4455554321 112233444444442 2 34599
Q ss_pred EEEEEccccchHHHHHHHhcceeEEecCCc-eeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHH-----
Q 026127 103 TVAAVNGHAAAAGLTLALSHDYVIMRRDKG-VLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGE----- 176 (243)
Q Consensus 103 ~Iaav~G~~~G~G~~la~~~D~~ia~~~~~-~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~----- 176 (243)
+|+++.|+|.||+......||++|+.++.+ .+ |++-|. ..+ -.+|+.++.+
T Consensus 166 ~Isvv~gp~~GG~a~s~~l~D~~i~~~~~a~~i-------~~aGP~--------------vI~--~~~ge~~~~e~lgga 222 (522)
T 1x0u_A 166 QITIMAGPAAGGAVYSPALTDFIIMIKGDAYYM-------FVTGPE--------------ITK--VVLGEEVSFQDLGGA 222 (522)
T ss_dssp EEEEECSEEEGGGGHHHHHSSEEEEECSTTCEE-------ESSCHH--------------HHH--HTTCCCCCHHHHHBH
T ss_pred EEEEEcCCCchHHHHHHhcCCeEEEecCCccEE-------EecCHH--------------HHH--HHhCCcCChhhcchH
Confidence 999999999999999899999999998744 33 332222 211 1356666653
Q ss_pred HHH--HcCcchhccCCHhHHHHHHHHHHHHHhc
Q 026127 177 EAL--RMGLVEAAYDSEEQVAEASMRLAKQLAG 207 (243)
Q Consensus 177 eA~--~~Glv~~v~~~~~~l~~~a~~~a~~l~~ 207 (243)
|.+ +.|++|.++++.+++.+.+.++...+-.
T Consensus 223 e~~~~~~G~~d~vv~~~~~~~~~~~~ll~~lp~ 255 (522)
T 1x0u_A 223 VVHATKSGVVHFMVDSEQEAINLTKRLLSYLPS 255 (522)
T ss_dssp HHHHHTTCCCSEEESCHHHHHHHHHHHHHHSCS
T ss_pred HHHhhcCceeEEEeCCHHHHHHHHHHHHHhccc
Confidence 323 6999999999856777777777766643
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00011 Score=67.01 Aligned_cols=146 Identities=20% Similarity=0.206 Sum_probs=93.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026127 23 EHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMP 102 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 102 (243)
.-++.....+.+..+++.+.+..-+ +|.+..+|+.. +.+-..... . .. .+.+ +..-...+.....|
T Consensus 134 gGS~g~~~~~Ki~ra~e~A~~~~lP--vI~l~dSgGAR-----l~~q~~~~~-~--~~---~~~~-i~~~~~~ls~~giP 199 (555)
T 3u9r_B 134 GGTYYPLTVKKHLRAQAIALENRLP--CIYLVDSGGAN-----LPRQDEVFP-D--RE---HFGR-IFFNQANMSARGIP 199 (555)
T ss_dssp GGCBCHHHHHHHHHHHHHHHHHTCC--EEEEECCCCBC-----GGGGGGTSS-S--TT---STTH-HHHHHHHHHHTTCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCC--EEEEECCCCCC-----CCCcceeec-c--cc---cHHH-HHHHHHHHhcCCCC
Confidence 3588999999999999999987655 45454433333 211111000 0 00 0011 11223345567899
Q ss_pred EEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHH----
Q 026127 103 TVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEA---- 178 (243)
Q Consensus 103 ~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA---- 178 (243)
+|++|.|+|.|||......||++|+.++.+. +++.-| ...+ ..+|+.+++++.
T Consensus 200 ~Isvv~G~~~GGga~~~a~~d~vim~e~~a~-------i~~aGP--------------~vik--~~~ge~~~~e~LGGa~ 256 (555)
T 3u9r_B 200 QIAVVMGSCTAGGAYVPAMSDETVMVREQAT-------IFLAGP--------------PLVK--AATGEVVSAEELGGAD 256 (555)
T ss_dssp EEEEECSCCBGGGGHHHHTSSEEEEETTTCB-------CBSSCH--------------HHHH--HHHCCCCCHHHHHBHH
T ss_pred EEEEEecCCCccHHHHHHhCCceEEecCCce-------EEEccH--------------HHHH--HHhcCccChhhccchh
Confidence 9999999999999999999999998876443 344222 2222 246899999988
Q ss_pred ---HHcCcchhccCCHhHHHHHHHHHHHHH
Q 026127 179 ---LRMGLVEAAYDSEEQVAEASMRLAKQL 205 (243)
Q Consensus 179 ---~~~Glv~~v~~~~~~l~~~a~~~a~~l 205 (243)
.+.|++|.++++.++..+.++++...+
T Consensus 257 ~h~~~sGv~d~v~~de~~a~~~~r~~ls~L 286 (555)
T 3u9r_B 257 VHCKVSGVADHYAEDDDHALAIARRCVANL 286 (555)
T ss_dssp HHHHTTCSCSEEESSHHHHHHHHHHHHHTS
T ss_pred hhhhccCceeEEeCCHHHHHHHHHHHHHhC
Confidence 789999999998444445555554444
|
| >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00042 Score=63.24 Aligned_cols=142 Identities=17% Similarity=0.178 Sum_probs=92.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026127 23 EHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMP 102 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 102 (243)
.-++.....+.+..+++.+.+..-+ +|.+.. |.|..+.+-. ..+..+.+.+..+.. + .-..|
T Consensus 121 gGS~g~~~~~Ki~ra~e~A~~~~lP--~I~l~d-----SGGARmqeg~---------~sl~~~~~i~~~~~~-~-s~~iP 182 (548)
T 2bzr_A 121 GGSLGEVYGEKIVKVQELAIKTGRP--LIGIND-----GAGARIQEGV---------VSLGLYSRIFRNNIL-A-SGVIP 182 (548)
T ss_dssp GGCCCHHHHHHHHHHHHHHHHHTCC--EEEEEC-----CCSCCGGGTT---------HHHHHHHHHHHHHHH-T-TTTSC
T ss_pred cCCCChhHHHHHHHHHHHHHHcCCC--EEEEEc-----CCCCCchhHH---------HHHHHHHHHHHHHHH-h-cCCCc
Confidence 4589999999999999999987665 555555 4455544321 112233333444432 2 34599
Q ss_pred EEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHH-----H
Q 026127 103 TVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGE-----E 177 (243)
Q Consensus 103 ~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~-----e 177 (243)
.|+++.|+|.||+......||++|+.++.+.+ |++-| ...+. .+|+.++.+ +
T Consensus 183 ~Isvv~gp~~GG~a~s~al~D~ii~~~~~a~i-------~~aGP--------------~vI~~--~~ge~v~~e~lggae 239 (548)
T 2bzr_A 183 QISLIMGAAAGGHVYSPALTDFVIMVDQTSQM-------FITGP--------------DVIKT--VTGEEVTMEELGGAH 239 (548)
T ss_dssp EEEEECSEEESGGGHHHHHSSEEEEETTTCEE-------ESSCH--------------HHHHH--HHCCCCCHHHHHBHH
T ss_pred EEEEecCCCchHHHHHHHhCCeEEeccCceeE-------EeccH--------------HHHHH--HhCCcCChHhcccHH
Confidence 99999999999999888899999999874444 33222 22221 246666653 3
Q ss_pred HH--HcCcchhccCCHhHHHHHHHHHHHHH
Q 026127 178 AL--RMGLVEAAYDSEEQVAEASMRLAKQL 205 (243)
Q Consensus 178 A~--~~Glv~~v~~~~~~l~~~a~~~a~~l 205 (243)
.+ +.|++|.++++..++.+.+.++...+
T Consensus 240 ~h~~~sG~~d~vv~d~~~~~~~~r~lls~l 269 (548)
T 2bzr_A 240 THMAKSGTAHYAASGEQDAFDYVRELLSYL 269 (548)
T ss_dssp HHHHTSSCCSEEESSHHHHHHHHHHHHTTS
T ss_pred HHhhccCceeEEeCCHHHHHHHHHHHHHhc
Confidence 23 69999999997555666666655444
|
| >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0005 Score=62.54 Aligned_cols=142 Identities=15% Similarity=0.170 Sum_probs=91.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026127 23 EHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMP 102 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 102 (243)
.-++.....+.+..+++.+.+..-+ +|.+..+ .|..+.+-. ..+..+.+.+..... .....|
T Consensus 111 gGS~g~~~~~Ki~r~~e~A~~~~lP--vI~l~dS-----gGAR~qeg~---------~~l~g~~~~~~~~~~--~s~~iP 172 (527)
T 1vrg_A 111 GGSLGEMHAKKIVKLLDLALKMGIP--VIGINDS-----GGARIQEGV---------DALAGYGEIFLRNTL--ASGVVP 172 (527)
T ss_dssp GGCBCHHHHHHHHHHHHHHHHHTCC--EEEEEEE-----CSBCGGGTH---------HHHHHHHHHHHHHHH--HTTTSC
T ss_pred CccccHHHHHHHHHHHHHHHHcCCC--EEEEECC-----CCCCccchh---------HHHHHHHHHHHHHHH--hCCCCC
Confidence 4589999999999999999887665 4444433 333333211 111233444444432 256799
Q ss_pred EEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHH-----H
Q 026127 103 TVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGE-----E 177 (243)
Q Consensus 103 ~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~-----e 177 (243)
+|++|.|+|.|||......||++|+.++.+. +|++-|.. .+ ..+|+.++.+ +
T Consensus 173 ~Isvv~Gp~~GG~a~s~al~D~vi~~~~~a~-------i~~aGP~v--------------i~--~~~ge~v~~e~lggae 229 (527)
T 1vrg_A 173 QITVIAGPCAGGAVYSPALTDFIVMVDQTAR-------MFITGPNV--------------IK--AVTGEEISQEDLGGAM 229 (527)
T ss_dssp EEEEEEEEEBGGGGHHHHHSSEEEEETTTCB-------CBSSCHHH--------------HH--HHHCCCCCHHHHHBHH
T ss_pred EEEEEeCCCchHHHHHHHcCCeEEEecCceE-------EEecCHHH--------------HH--HHhCCCCCccccccHH
Confidence 9999999999999988889999999987343 34432322 11 1235555543 3
Q ss_pred HH--HcCcchhccCCHhHHHHHHHHHHHHH
Q 026127 178 AL--RMGLVEAAYDSEEQVAEASMRLAKQL 205 (243)
Q Consensus 178 A~--~~Glv~~v~~~~~~l~~~a~~~a~~l 205 (243)
.+ +.|++|.++++..++.+.+.++...+
T Consensus 230 ~~~~~~G~vd~vv~d~~~~~~~~~~~Ls~l 259 (527)
T 1vrg_A 230 VHNQKSGNAHFLADNDEKAMSLVRTLLSYL 259 (527)
T ss_dssp HHHHTSCCCSEEESSHHHHHHHHHHHHTTS
T ss_pred HHhhcccceEEEecCHHHHHHHHHHHHHhc
Confidence 23 69999999998555666666555444
|
| >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0011 Score=60.22 Aligned_cols=159 Identities=13% Similarity=0.100 Sum_probs=99.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026127 24 HRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPT 103 (243)
Q Consensus 24 N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ 103 (243)
-.++.+..+...+.++.+++..-+ +|.+.-. +.|..|.+-++ ......+.+++.++.+..+|+
T Consensus 344 G~~~~~~~~Kaar~i~~a~~~~~P--lv~lvDt-pG~~~G~~~E~--------------~g~~~~~A~~~~a~~~~~vP~ 406 (527)
T 1vrg_A 344 GVLDIDSSDKAARFIRFLDAFNIP--ILTFVDT-PGYLPGVAQEH--------------GGIIRHGAKLLYAYSEATVPK 406 (527)
T ss_dssp GCBCHHHHHHHHHHHHHHHHTTCC--EEEEEEE-CCBCCCHHHHH--------------TTHHHHHHHHHHHHHHCCSCE
T ss_pred CCCCHHHHHHHHHHHHHHhhcCCC--eEEEecC-CCCcCchhhHH--------------hHHHHHHHHHHHHHhcCCCCE
Confidence 379999999999999888765444 3333322 34555543222 223445567888888999999
Q ss_pred EEEEccccchHHHHHHHh----cceeEEecCCceeeccccccCcCCChhhHHHHHH-Hh---CCHHHHHH-HH--hcCcC
Q 026127 104 VAAVNGHAAAAGLTLALS----HDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRA-KV---GSATARRD-VL--LRAKK 172 (243)
Q Consensus 104 Iaav~G~~~G~G~~la~~----~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~-~~---g~~~~a~~-l~--l~g~~ 172 (243)
|+.|-|.|.|||+.-... +|+++|.++ ++++ ...|.+.+..+.+ .+ ..+...++ +. +.-+.
T Consensus 407 isvI~g~~~gGg~~am~~~~~~~d~~~a~p~-a~~~-------Vm~pegaa~Il~r~~~~~~~d~~~~~~~~~~~y~~~~ 478 (527)
T 1vrg_A 407 ITVILRKAYGGAYIAMGSKHLGADMVLAWPS-AEIA-------VMGPEGAANIIFKREIEASSNPEETRRKLIEEYKQQF 478 (527)
T ss_dssp EEEEEEEEEHHHHHHTTCGGGTCSEEEECTT-CEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHT
T ss_pred EEEEeCCcccHHHHHhcCCCCCCCEEEEcCC-CeEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHHhh
Confidence 999999999888754433 888888887 6665 3134443333322 11 11112111 22 11123
Q ss_pred CCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcC
Q 026127 173 IKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208 (243)
Q Consensus 173 ~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~ 208 (243)
-++..+.+.|+||.|+++ .+..+......+.+...
T Consensus 479 ~~p~~~~~~g~iD~II~p-~~tR~~l~~~L~~l~~~ 513 (527)
T 1vrg_A 479 ANPYIAASRGYVDMVIDP-RETRKYIMRALEVCETK 513 (527)
T ss_dssp SSHHHHHHTTSSSEECCG-GGHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHcCCCCeeeCH-HHHHHHHHHHHHHHhcC
Confidence 667889999999999987 55655555555555443
|
| >1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0005 Score=62.49 Aligned_cols=158 Identities=13% Similarity=0.097 Sum_probs=99.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026127 24 HRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPT 103 (243)
Q Consensus 24 N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ 103 (243)
-+++.+..+.+.+.++.+++..-+ +|.+... ..|..|.+-++ ......+.+++.++.+...|+
T Consensus 339 G~l~~~~~~K~ar~i~~a~~~~~P--lv~l~ds-~G~~~G~~~E~--------------~G~~~~~Ak~l~~~~~~~vP~ 401 (522)
T 1x0u_A 339 GSIDIDAADKAARFIRFCDAFNIP--LISLVDT-PGYVPGTDQEY--------------KGIIRHGAKMLYAFAEATVPK 401 (522)
T ss_dssp GCBCHHHHHHHHHHHHHHHHTTCC--EEEEEEE-CCBCCSHHHHH--------------TTHHHHHHHHHHHHHHCCSCE
T ss_pred CCcCHHHHHHHHHHHHHHhhCCCC--EEEEecC-CCCCCchHHHH--------------HHHHHHHHHHHHHHHhCCCCE
Confidence 489999999999999988876554 4444443 23444432221 112335566788888999999
Q ss_pred EEEEccccchHHHHHHHh----cceeEEecCCceeeccccccCcCCChhhHHHHHHH-hCCH-----HHHHHHHh--cCc
Q 026127 104 VAAVNGHAAAAGLTLALS----HDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAK-VGSA-----TARRDVLL--RAK 171 (243)
Q Consensus 104 Iaav~G~~~G~G~~la~~----~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~-~g~~-----~~a~~l~l--~g~ 171 (243)
|+.|-|.|.|||+..... +|++++.++ ++++ +.-|.+.+..+.+. +- . ...+++.- .-.
T Consensus 402 Isvi~g~~~GGg~~~~a~~a~~~D~v~a~p~-A~i~-------v~gpegaa~Il~r~~i~-~~~d~~~~~~~l~~~y~~~ 472 (522)
T 1x0u_A 402 ITVIVRKSYGGAHIAMSIKSLGADLVYAWPT-AEIA-------VTGPEGAVRILYRKEIQ-QASNPDDVLKQRIAEYRKL 472 (522)
T ss_dssp EEEEEEEEEHHHHHHTCCGGGTCSEEEECTT-CEEE-------SSCHHHHHHHHTSSSSS-SSSSSSSSSHHHHHHHHHH
T ss_pred EEEEeCCcccHHHHHhcccccCCCEEEEeCC-CEEE-------ecCHHHHHHHHhhhhhh-cccCHHHHHHHHHHHHHHh
Confidence 999999999998755544 999999887 6654 32344433333222 11 0 00011110 011
Q ss_pred CCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcC
Q 026127 172 KIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208 (243)
Q Consensus 172 ~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~ 208 (243)
--++..+.+.|+||.|++. .++.+......+.+...
T Consensus 473 ~~~~~~~~~~G~iD~II~p-~~tR~~L~~~L~~~~~~ 508 (522)
T 1x0u_A 473 FANPYWAAEKGLVDDVIEP-KDTRRVIVAGLEMLKTK 508 (522)
T ss_dssp HSSSHHHHHTTSSSEECCG-GGHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHhcCCCcEeECH-HHHHHHHHHHHHHHhhc
Confidence 2456789999999999987 66766666666665443
|
| >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0021 Score=58.39 Aligned_cols=172 Identities=12% Similarity=0.049 Sum_probs=106.0
Q ss_pred CcEEEEEEcCCCCCCC--CCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHH
Q 026127 8 GDVFVLTLTGSSDVDE--HRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYM 85 (243)
Q Consensus 8 ~~v~~i~ln~p~~~~~--N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 85 (243)
+.-.-|.=|+| .. -.++.+-.....+.++.+++..-+ +|.+.-. ..|..|.+-++ ...
T Consensus 325 G~~Vgvian~~---~~~~G~~~~~~a~Kaar~i~~~~~~~iP--lv~lvDt-pGf~~G~~~E~--------------~Gi 384 (523)
T 1on3_A 325 GRSVGIVANQP---SVMSGCLDINASDKAAEFVNFCDSFNIP--LVQLVDV-PGFLPGVQQEY--------------GGI 384 (523)
T ss_dssp TEEEEEEEECT---TSGGGCBCHHHHHHHHHHHHHHHHTTCC--EEEEEEE-CCBCCCHHHHH--------------TTH
T ss_pred CEEEEEEEecC---CccCCCCCHHHHHHHHHHHHHHHhcCCC--eEEEEeC-CCcCcchHHHH--------------hhH
Confidence 33334444555 33 379999999999999888765443 3333332 45666653332 233
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHh----cceeEEecCCceeeccccccCcCCChhhHHHHHHH-h---
Q 026127 86 VESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALS----HDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAK-V--- 157 (243)
Q Consensus 86 ~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~----~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~-~--- 157 (243)
.+...+++.++.+..+|+|+.|-|.+.|||+.-... +|++++.++ ++++ ...|.+.+..+.+. +
T Consensus 385 ~~~~A~~l~a~a~~~vP~itvI~g~~~Ggg~~am~~~~~~~d~~~a~p~-a~~~-------Vm~pegaa~Il~r~~~~~~ 456 (523)
T 1on3_A 385 IRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPS-AEIA-------VMGAEGAANVIFRKEIKAA 456 (523)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTT-CEEE-------SSCHHHHHHHHTHHHHHHS
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeCCcccHHHHHhcccCCCCCEEEEcCC-CeEE-------ecCHHHHHHHHhhhhhhcc
Confidence 555777888889999999999999999988755544 788888776 6554 32344433333222 1
Q ss_pred CCHHHHHH-HHh--cCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcC
Q 026127 158 GSATARRD-VLL--RAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208 (243)
Q Consensus 158 g~~~~a~~-l~l--~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~ 208 (243)
......++ +.- .-+.-++..+.+.|+||.|+++ .+..+......+.+...
T Consensus 457 ~d~~~~~~~~~~~y~~~~~~p~~~a~~g~iD~II~p-~~tR~~l~~~L~~l~~~ 509 (523)
T 1on3_A 457 DDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDP-ADTRRKIASALEMYATK 509 (523)
T ss_dssp SCHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEECCG-GGHHHHHHHHHHHGGGC
T ss_pred cCHHHHHHHHHHHHHHhhCCHHHHHhcCCCCEeeCH-HHHHHHHHHHHHHHhcC
Confidence 11111111 221 1112567889999999999987 55655555555555443
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0071 Score=55.61 Aligned_cols=157 Identities=9% Similarity=0.079 Sum_probs=102.7
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 25 RFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 25 ~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
.++.+-.....+.++.+++..-+ +|.+.-. ..|..|.+-+ .....+...+++.++.++.+|+|
T Consensus 386 ~l~~~~a~Kaarfi~~c~~~~iP--lv~lvDt-pGf~~G~~~E--------------~~Gi~~~gA~~~~a~a~a~vP~i 448 (587)
T 1pix_A 386 KLYRQGLVKMNEFVTLCARDRLP--IVWIQDT-TGIDVGNDAE--------------KAELLGLGQSLIYSIQTSHIPQF 448 (587)
T ss_dssp EECHHHHHHHHHHHHHHHHTTCC--EEEEECC-CEECCSHHHH--------------HTTHHHHHHHHHHHHHTCCCCEE
T ss_pred CcCHHHHHHHHHHHHHhhcCCCC--eEEEecC-CCCCCcHHHH--------------HHHHHHHHHHHHHHHHhCCCCEE
Confidence 68999999999999877665433 4444443 5666666333 23346677889999999999999
Q ss_pred EEEccccchHHHHHHHh-----c--ceeEEecCCceeeccccccCcCCChhhHHHHH-HHhCCH-----------HH-HH
Q 026127 105 AAVNGHAAAAGLTLALS-----H--DYVIMRRDKGVLYMSEVDIGLTLPDYFAALFR-AKVGSA-----------TA-RR 164 (243)
Q Consensus 105 aav~G~~~G~G~~la~~-----~--D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~-~~~g~~-----------~~-a~ 164 (243)
+.|-|.+.|||+ ++++ . |++++.++ ++++ +..|.+.+..+. ...- . .. .+
T Consensus 449 tvI~g~~~Ggg~-~am~~~~~~~~~d~~~a~p~-A~~~-------Vm~pegaa~Il~r~~~~-~~~~~g~~~~~~~~~~~ 518 (587)
T 1pix_A 449 EITLRKGTAAAH-YVLGGPQGNDTNAFSIGTAA-TEIA-------VMNGETAATAMYSRRLA-KDRKAGKDLQPTIDKMN 518 (587)
T ss_dssp EEECSEEETTHH-HHTTCTTCTTTEEEEEECTT-CEEE-------SSCHHHHHHHHHHHHHH-HHHHTTCCCHHHHHHHH
T ss_pred EEEcCCCccHHH-HHhcCcccCcccceeeeccC-CeEe-------cCCHHHHHHHHHhhhhh-hhhhcCCChHHHHHHHH
Confidence 999999998885 4444 4 99888887 6665 312433333322 1111 1 00 01
Q ss_pred HHHh-cCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCC
Q 026127 165 DVLL-RAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRK 209 (243)
Q Consensus 165 ~l~l-~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~ 209 (243)
++.- .-+..++..|.+.|+||.|+++ .+.........+.+...|
T Consensus 519 ~~~~~y~~~~~p~~aa~~g~iD~VI~p-~~tR~~l~~~L~~~~~~~ 563 (587)
T 1pix_A 519 NLIQAFYTKSRPKVCAELGLVDEIVDM-NKIRGYVEAFTEAAYQNP 563 (587)
T ss_dssp HHHHHHHHTTSHHHHHHHTSSSEECCT-TTHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhCCHHHHHhcCCCccccCH-HHHHHHHHHHHHHHhcCC
Confidence 1110 1124889999999999999987 566666666666666655
|
| >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0032 Score=57.48 Aligned_cols=170 Identities=9% Similarity=0.035 Sum_probs=101.7
Q ss_pred CcEEEEEEcCCCCCCC--CCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHH
Q 026127 8 GDVFVLTLTGSSDVDE--HRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYM 85 (243)
Q Consensus 8 ~~v~~i~ln~p~~~~~--N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 85 (243)
+.-.-|.=|+| .. -.++.+..+...+.++.+++..-+ +|.+--. ..|..|.+-++ ...
T Consensus 346 G~~Vgvian~~---~~~~G~l~~~~a~Kaar~i~~a~~~~iP--lv~lvDt-~Gf~~G~~~E~--------------~Gi 405 (548)
T 2bzr_A 346 GRPVGIVANQP---THFAGCLDINASEKAARFVRTCDCFNIP--IVMLVDV-PGFLPGTDQEY--------------NGI 405 (548)
T ss_dssp TEEEEEEEECT---TSGGGCBCHHHHHHHHHHHHHHHHTTCC--EEEEEEE-CCBCCCHHHHH--------------TTH
T ss_pred CEEEEEEEECC---cccCCCCCHHHHHHHHHHHHHHHhcCCC--EEEEeec-cCCCCChHHHH--------------hhH
Confidence 33334444555 33 379999999999999998765444 3333322 44666654332 223
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHH----hcceeEEecCCceeeccccccCcCCChhhHHHHHHH-hCC-
Q 026127 86 VESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLAL----SHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAK-VGS- 159 (243)
Q Consensus 86 ~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~----~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~-~g~- 159 (243)
.+...+++.++.+..+|+|+.|-|.+.|||+.-.. .+|++++.++ ++++ +..|.+.+..+.+. +-.
T Consensus 406 ~~~ga~~l~a~~~~~VP~isvI~g~~~Ggg~~am~~~~~~~d~~~awp~-a~i~-------Vmgpegaa~Il~r~~~~~~ 477 (548)
T 2bzr_A 406 IRRGAKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPT-AQIA-------VMGASGAVGFVYRQQLAEA 477 (548)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTT-CEEE-------SSCHHHHHHHHTCCC----
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhccccCCCCEEEEcCC-CEEE-------ecCHHHHHHHHhhhHHhhh
Confidence 44566788888899999999999999998875543 3899999887 6665 31244333333221 110
Q ss_pred ------HHHH-HHHHh--cCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHh
Q 026127 160 ------ATAR-RDVLL--RAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLA 206 (243)
Q Consensus 160 ------~~~a-~~l~l--~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~ 206 (243)
.... +++.- .-..-++..+.+.|+||.|+++ .+..+......+.+.
T Consensus 478 ~~~g~~~~~~~~~~~~~y~~~~~~p~~~a~~g~iD~II~p-~~tR~~l~~~L~~l~ 532 (548)
T 2bzr_A 478 AANGEDIDKLRLRLQQEYEDTLVNPYVAAERGYVGAVIPP-SHTRGYIGTALRLLE 532 (548)
T ss_dssp ------CHHHHHHHHHHHHHHHSBSHHHHHTTSSSEECCG-GGHHHHHHHHHHHTT
T ss_pred hcccccHHHHHHHHHHHHHHhhCCHHHHHhcCCCceeeCH-HHHHHHHHHHHHHHh
Confidence 0011 11211 0112455778999999999987 555555444444443
|
| >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0083 Score=54.45 Aligned_cols=170 Identities=12% Similarity=0.131 Sum_probs=104.3
Q ss_pred eCcEEEEEEcCCCCCCC--CCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHH
Q 026127 7 HGDVFVLTLTGSSDVDE--HRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHY 84 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~--N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 84 (243)
+|.-.-|.=|+| .. -.++.+..+...+.++.+++..-+ +|.+.-.+ .|..|.+-++ ..
T Consensus 330 ~G~~Vgvian~~---~~~~G~l~~~~a~Kaarfi~~c~~~~iP--lv~lvDtp-Gf~~G~~~E~--------------~g 389 (530)
T 3iav_A 330 EGRPVGIVANQP---MQFAGCLDITASEKAARFVRTCDAFNVP--VLTFVDVP-GFLPGVDQEH--------------DG 389 (530)
T ss_dssp TTEEEEEEEECT---TSGGGCBCHHHHHHHHHHHHHHHHTTCC--EEEEEEEC-CBCCCHHHHH--------------TT
T ss_pred CCEEEEEEEecC---cccCCCCCHHHHHHHHHHHHHHHhcCCC--EEEEeeCC-CCCccHHHHH--------------hh
Confidence 343444555666 44 379999999999999888876544 44444332 3766664332 33
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHh-----cceeEEecCCceeeccccccCcCCChhhHHHHHHH-hC
Q 026127 85 MVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALS-----HDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAK-VG 158 (243)
Q Consensus 85 ~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~-----~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~-~g 158 (243)
..+...+++.++.+..+|+|+.|-|.+.|||+ ++++ .|+++|.++ ++++ ...|...+..+.+. +-
T Consensus 390 i~~~~Ak~l~a~a~a~vP~itvI~g~~~GGa~-~am~~~~~~~d~~~awp~-a~~~-------Vm~~egaa~il~r~~~~ 460 (530)
T 3iav_A 390 IIRRGAKLIFAYAEATVPLITVITRKAFGGAY-VVMGSKHLGADLNLAWPT-AQIA-------VMGAQGAVNILHRRTIA 460 (530)
T ss_dssp HHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTT-CEEE-------SSCHHHHHHHHTSTTTS
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEeCCcchHHH-HHhcCCCCCCCEEEEcCC-ceEe-------cCCHHHHHHHHhhhhhh
Confidence 46667889999999999999999999998776 4444 699888887 6665 31233333333221 11
Q ss_pred -----CHHHHHHHH--hcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHh
Q 026127 159 -----SATARRDVL--LRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLA 206 (243)
Q Consensus 159 -----~~~~a~~l~--l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~ 206 (243)
......++. +.-+.-++..|.+.|+||.|+++ .+.........+.+.
T Consensus 461 ~~~~d~~~~~~~~~~~y~~~~~~p~~aa~~~~vD~VIdP-~~TR~~l~~~l~~~~ 514 (530)
T 3iav_A 461 DAGDDAEATRARLIQEYEDALLNPYTAAERGYVDAVIMP-SDTRRHIVRGLRQLR 514 (530)
T ss_dssp TTCTTCHHHHHHHHHHHHHHHSSSHHHHHTTSSSEECCG-GGHHHHHHHHHHHHT
T ss_pred hcccCHHHHHHHHHHHHHHhcCCHHHHHhcCCCCcccCH-HHHHHHHHHHHHHHh
Confidence 011111111 11112467788899999999987 445444444334443
|
| >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0061 Score=55.33 Aligned_cols=166 Identities=11% Similarity=0.051 Sum_probs=100.1
Q ss_pred eCcEEEEEEcCCCCCCC--CCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHH
Q 026127 7 HGDVFVLTLTGSSDVDE--HRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHY 84 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~--N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 84 (243)
++.-.-|.=|+| .. -.++.+..+...+.++.+++..-+ +|.+.-. ..|..|.+-+ ...
T Consensus 336 ~G~~Vgvian~~---~~~~G~l~~~~a~Kaarfi~lcd~~~iP--lv~lvDt-pGf~~G~~~E--------------~~G 395 (531)
T 3n6r_B 336 EGRTVGVVANQP---LVLAGCLDIDSSRKAARFVRFCDAFEIP--LLTLIDV-PGFLPGTSQE--------------YGG 395 (531)
T ss_dssp TTEEEEEEEECT---TTGGGCBCHHHHHHHHHHHHHHHHTTCC--EEEEEEE-CSBCCSHHHH--------------HTT
T ss_pred CCEEEEEEEecc---cccCCCCCHHHHHHHHHHHHHhhccCCC--EEEEeCC-CCCCCCHHHH--------------Hhh
Confidence 343344555566 43 379999999999999888765443 4444332 3455555332 223
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHh----cceeEEecCCceeeccccccCcCCChhhHHHHH-HHhCC
Q 026127 85 MVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALS----HDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFR-AKVGS 159 (243)
Q Consensus 85 ~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~----~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~-~~~g~ 159 (243)
..+...+++.++.+..+|+|+.|-|.+.|||+.-... +|+++|.++ ++++ ...|...+..+. +.+-.
T Consensus 396 i~~~gAk~l~a~a~a~VP~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~-A~i~-------Vm~pegaa~Il~r~~~~~ 467 (531)
T 3n6r_B 396 VIKHGAKLLYAYGEATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPT-AEVA-------VMGAKGATEIIHRGDLGD 467 (531)
T ss_dssp HHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTT-CEEE-------SSCHHHHHHHHCCTTTTS
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCccchhhhhccCccCCCCeEEEcCC-ceEe-------cCCHHHHHHHHhcccccc
Confidence 4566788999999999999999999999988744432 899888887 6665 312333333322 11210
Q ss_pred --HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHH
Q 026127 160 --ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRL 201 (243)
Q Consensus 160 --~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~ 201 (243)
......--+.-+.-++..|.+.|+||.|+++ .+........
T Consensus 468 ~~~~~~~~~~y~~~~~~p~~aa~~~~vD~vIdP-~~TR~~l~~~ 510 (531)
T 3n6r_B 468 PEKIAQHTADYEERFANPFVASERGFVDEVIQP-RSTRKRVARA 510 (531)
T ss_dssp TTHHHHHHHHHHHHHSSSHHHHHHTSSSEECCG-GGHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHhcCccCcccCH-HHHHHHHHHH
Confidence 1110000111122456678899999999987 4444433333
|
| >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.008 Score=55.15 Aligned_cols=164 Identities=13% Similarity=0.137 Sum_probs=91.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026127 23 EHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMP 102 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 102 (243)
.-++.....+.+..+++.+.+..-+ +|.+..+|+.+.. +-++.... . ..+.+.+. -...+.....|
T Consensus 119 gGS~g~~~~~Ki~Ra~e~A~~~~lP--vI~l~dSgGArl~--~qe~~~~~-l--------~~~g~if~-~~~~ls~~~iP 184 (588)
T 3gf3_A 119 AGAWVPGQAENLIRCSDAAKMMHLP--LIYLLNCSGVEFP--NQDKVYPN-R--------RGGGTPFF-RNSELNQLGIP 184 (588)
T ss_dssp GGCBCTTHHHHHHHHHHHHHHHTCC--EEEEECCCCBCGG--GHHHHSSS-T--------TSTTHHHH-HHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCC--EEEEEcCCCcCcc--cccccccc-h--------hhHHHHHH-HHHHHhcCCCC
Confidence 3588889999999999999887655 4555544433331 00111100 0 00111112 22344557899
Q ss_pred EEEEEccccchHHHHHHHhcceeEEecCCceeeccccc--cCcCCChhhHHHHHHH---hCCHHHHHHHHhcCcCCCHHH
Q 026127 103 TVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVD--IGLTLPDYFAALFRAK---VGSATARRDVLLRAKKIKGEE 177 (243)
Q Consensus 103 ~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~--~Gl~~p~~g~~~l~~~---~g~~~~a~~l~l~g~~~~a~e 177 (243)
+|++|-|+|.|||...++++|++++.++ +.+.+.... -|+ .|. +.+.+.- +. .....+-..+.+.+.+.+
T Consensus 185 ~Isvv~Gp~~gGgAy~a~~~~vim~~~~-a~i~~aGP~vI~~~-~p~--g~~~~~~~~~~~-~~~~ge~~vs~eeLGGa~ 259 (588)
T 3gf3_A 185 VIVGIYGTNPAGGGYHSISPTILIAHQD-ANMAVGGAGILSGM-NPK--GYIDDEAAEQII-AAQIENSKLKVPAPGSVP 259 (588)
T ss_dssp EEEEECSEEETHHHHHHHSSSEEEEETT-CEEESSCCC------------------CHHHH-HHHHHHHHTTCCCTTBHH
T ss_pred EEEEEeCCCCchhhhHhhCCeEEEEECC-cEEEecChhhhccc-Ccc--ccccccchhhhh-hhhccccccChhhccchh
Confidence 9999999999998866888888888766 655542211 111 011 0111111 11 111112224677787777
Q ss_pred HH--HcCcchhccCCHhHHHHHHHHHHHHH
Q 026127 178 AL--RMGLVEAAYDSEEQVAEASMRLAKQL 205 (243)
Q Consensus 178 A~--~~Glv~~v~~~~~~l~~~a~~~a~~l 205 (243)
.+ ..|++|.++++.++..+.++++..-+
T Consensus 260 ~h~~~sGv~d~~a~de~~al~~~r~~ls~L 289 (588)
T 3gf3_A 260 IHYDETGFFREVYQNDLGVIDGIKKYISYL 289 (588)
T ss_dssp HHTTTSCCSCEEESSHHHHHHHHHHHHHTS
T ss_pred hhccccccceEEeCCHHHHHHHHHHHHHhC
Confidence 77 69999999998545555555555444
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B | Back alignment and structure |
|---|
Probab=96.82 E-value=0.038 Score=50.38 Aligned_cols=157 Identities=13% Similarity=0.016 Sum_probs=93.9
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 25 RFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 25 ~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
.++.+..+...+.++.+++..-+ +|.+.-. ..|..|.+-++ ....+...+++.++.+..+|+|
T Consensus 367 ~l~~~~a~Kaarfi~~c~~~~iP--lv~lvDt-pGf~~G~~~E~--------------~Gi~~~gAk~~~a~~~a~vP~i 429 (555)
T 3u9r_B 367 ILFAEAAQKGAHFIELACQRGIP--LLFLQNI-TGFMVGQKYEA--------------GGIAKHGAKLVTAVACARVPKF 429 (555)
T ss_dssp SBCHHHHHHHHHHHHHHHHHTCC--EEEEEEE-CCBCCSHHHHH--------------TTHHHHHHHHHHHHHHCCSCEE
T ss_pred ccCHHHHHHHHHHHHHHhcCCCC--EEEEecC-cCCCCCHHHHH--------------HHHHHHHHHHHHHHHhCCCCEE
Confidence 68899999999999988875443 4555443 34655653322 2235567888999999999999
Q ss_pred EEEccccchHHHHHHH----hcceeEEecCCceeeccccccCcCCChhhHHHHHH--H--h-------CCHHH---HHH-
Q 026127 105 AAVNGHAAAAGLTLAL----SHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRA--K--V-------GSATA---RRD- 165 (243)
Q Consensus 105 aav~G~~~G~G~~la~----~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~--~--~-------g~~~~---a~~- 165 (243)
+.|-|.+.|+|..-.. .+|++++.++ ++++ +.-|...+..+.. + + . ... .++
T Consensus 430 tvi~g~~~Ggg~~am~~~~~~~d~~~a~p~-A~i~-------Vmgpegaa~il~~~~~~~~~~~g~~~~-~~~~~~~~~~ 500 (555)
T 3u9r_B 430 TVLIGGSFGAGNYGMCGRAYDPRFLWMWPN-ARIG-------VMGGEQAAGVLAQVKREQAERAGQQLG-VEEEAKIKAP 500 (555)
T ss_dssp EEEEEEEETTHHHHTTCGGGCCSEEEECTT-CEEE-------SSCHHHHHHHHHHHHHHHHHTTTCCCC-HHHHHHHHHH
T ss_pred EEEeCCccchhhHhhcCccCCCCeEEEcCC-cEEE-------cCCHHHHHHHHHHHHHHHHHhccCCCC-cchHHHHHHH
Confidence 9999998888654322 3688888877 6665 3124333333221 1 0 1 000 000
Q ss_pred HH-hcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcC
Q 026127 166 VL-LRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208 (243)
Q Consensus 166 l~-l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~ 208 (243)
+. ..-+..++-.|-+.|++|.|+++ .+.........+.+..+
T Consensus 501 ~~~~y~~~~~p~~aa~r~~vD~vIdP-~~TR~~l~~~l~~~~~~ 543 (555)
T 3u9r_B 501 ILEQYEHQGHPYYSSARLWDDGVIDP-AQTREVLALALSAALNA 543 (555)
T ss_dssp HHHHHHHHHSHHHHHHTTSSSCBCCG-GGHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCHHHHhhccccCcccCh-HHHHHHHHHHHHHHhcC
Confidence 10 00122467777789999999987 44444444333444333
|
| >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.098 Score=48.02 Aligned_cols=157 Identities=11% Similarity=0.095 Sum_probs=99.4
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 25 RFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 25 ~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
.++.+-.+.-.+.++.+++..-+ +|.+.-. ..|..|.+-+ .....+...+++.++.++.+|+|
T Consensus 388 ~l~~~~a~Kaarfi~lcd~f~iP--lv~lvDt-pGf~~G~~aE--------------~~Gi~~~gAk~l~a~a~a~VP~i 450 (588)
T 3gf3_A 388 KLYRQGLIKMNEFVTLCARDRIP--LIWLQDT-TGIDVGDEAE--------------KAELLGLGQSLIYSIENSKLPSL 450 (588)
T ss_dssp EECHHHHHHHHHHHHHHHHTTCC--EEEEECC-CEECCSHHHH--------------HTTHHHHHHHHHHHHHHHCSCEE
T ss_pred CcCHHHHHHHHHHHHHhhhcCCC--eEEEecC-CCCCCCHHHH--------------HHHHHHHHHHHHHHHHhCCCCEE
Confidence 67899999999999988875433 4544443 5677776333 23346667889999999999999
Q ss_pred EEEccccchHHHHHHHhc-------ceeEEecCCceeeccccccCcCCChhhHHHHH-HHhC---C------H--HHHHH
Q 026127 105 AAVNGHAAAAGLTLALSH-------DYVIMRRDKGVLYMSEVDIGLTLPDYFAALFR-AKVG---S------A--TARRD 165 (243)
Q Consensus 105 aav~G~~~G~G~~la~~~-------D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~-~~~g---~------~--~~a~~ 165 (243)
+.|-|.+.|||. +++++ |+++|.++ ++++ ...|.+.+..+. +.+- . . ....+
T Consensus 451 tvI~g~~~Ggg~-~am~~~~~~~~~~~~~awp~-A~~s-------Vm~pEgaa~Il~~~~~~~~~~~~~~~~~~~~~~~~ 521 (588)
T 3gf3_A 451 EITIRKASAAAH-YVLGGPQGNNTNVFSIGTGA-CEYY-------VMPGETAANAMYSRKLVKAKKAGEDLQPIIGKMND 521 (588)
T ss_dssp EEESSEEETTHH-HHTTCTTCTTTEEEEEECTT-CEEE-------SSCHHHHHHHHHHHHHHHC-------CHHHHHHHH
T ss_pred EEEcCCccHHHH-HHhcccccCCccceEEECCC-ceEE-------eCCHHHHHHHHhhhHHhhhhccccccchHHHHHHH
Confidence 999999988876 44443 37777776 5554 323444443322 2221 0 0 00011
Q ss_pred HH-hcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcC
Q 026127 166 VL-LRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208 (243)
Q Consensus 166 l~-l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~ 208 (243)
+. -.-+..++-.|-+.|+||.|+++ .+.......+.....++
T Consensus 522 ~~~~y~~~~~p~~aA~r~~vD~VIdP-~~TR~~l~~~~~~~~~~ 564 (588)
T 3gf3_A 522 MIQMYTDKSRPKYCTEKGMVDEIVDM-TEVRPYIQAFTEAAYQN 564 (588)
T ss_dssp HHHHHHHTTSHHHHHHTTSSSEECCG-GGHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCHHHHHhcCCCCeeeCH-HHHHHHHHHHHHHHHcC
Confidence 11 11123588899999999999987 55666655555555444
|
| >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.012 Score=55.13 Aligned_cols=79 Identities=13% Similarity=0.031 Sum_probs=53.5
Q ss_pred CCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCC--CHH
Q 026127 99 LPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKI--KGE 176 (243)
Q Consensus 99 ~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~--~a~ 176 (243)
-..|+|+.|.|+|.|||.-+...||++|+.++ +. ++++-|.. +... +|+.+ +.+
T Consensus 245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~-s~-------ifltGP~v----Ik~~------------tGeeV~~s~e 300 (758)
T 3k8x_A 245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEG-QP-------IILTGAPA----INKM------------LGREVYTSNL 300 (758)
T ss_dssp TTSCEEEEECSCEETHHHHHHHHTCEEEEETT-CC-------EESSCHHH----HHHH------------HTSCCCSCTH
T ss_pred cCCCEEEEEccCCchHHHHHHhhCCEEEEECC-ce-------EEEeCHHH----HHHH------------hCCccccCch
Confidence 57899999999999999999999999999987 42 34432322 1111 34444 332
Q ss_pred H------HHHcCcchhccCCHhHHHHHHHHH
Q 026127 177 E------ALRMGLVEAAYDSEEQVAEASMRL 201 (243)
Q Consensus 177 e------A~~~Glv~~v~~~~~~l~~~a~~~ 201 (243)
+ ..+.|.+|.++++.++..+.++++
T Consensus 301 eLGGA~vh~~sGvad~va~dd~eal~~ir~l 331 (758)
T 3k8x_A 301 QLGGTQIMYNNGVSHLTAVDDLAGVEKIVEW 331 (758)
T ss_dssp HHHSHHHHTTTTSSSEEESSHHHHHHHHHHH
T ss_pred hcchhhHHHhcCCeeEEecCHHHHHHHHHHH
Confidence 2 237999999999844444444433
|
| >2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0028 Score=59.85 Aligned_cols=79 Identities=14% Similarity=0.107 Sum_probs=53.4
Q ss_pred CCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCC--C--
Q 026127 99 LPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKI--K-- 174 (243)
Q Consensus 99 ~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~--~-- 174 (243)
...|+|+.|.|+|.|+|..++..||++|+.++ +.+ +++-|.. +...+ |+.+ +
T Consensus 258 ~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~-a~i-------~ltGp~v----i~~~~------------Ge~vy~s~e 313 (793)
T 2x24_A 258 DEIVTISMVSCRALGIGAYLVRLGQRVIQVEN-SHI-------ILTGATA----LNKVL------------GRDVYTSNN 313 (793)
T ss_dssp HHSCEEEEECSEEETHHHHHHHHTCCEEEETT-CEE-------ESSCHHH----HHHHH------------SSCCCSCHH
T ss_pred CCCCEEEEEecCCchHHHHHHhhCCeEEEecc-ccE-------EecCHHH----HHHhc------------CCcccCChh
Confidence 47999999999999999999999999999987 543 3322322 22222 3332 2
Q ss_pred ---HHH-HHHcCcchhccCCHhHHHHHHHHH
Q 026127 175 ---GEE-ALRMGLVEAAYDSEEQVAEASMRL 201 (243)
Q Consensus 175 ---a~e-A~~~Glv~~v~~~~~~l~~~a~~~ 201 (243)
+.+ ..+.|++|.++++..+..+.++++
T Consensus 314 ~LGGa~v~~~~Gv~d~vv~dd~ea~~~ir~~ 344 (793)
T 2x24_A 314 QLGGVQIMHHNGVSHVTVPDDFEGVCTILEW 344 (793)
T ss_dssp HHHSHHHHTTTTSCSEEESSHHHHHHHHHHH
T ss_pred hhccHHHHHhcCceEEEeCCHHHHHHHHHHH
Confidence 112 567999999999844444444444
|
| >2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.54 Score=44.53 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 25 RFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 25 ~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
.++.+......+.++.+++..-+ +|.+.- -+.|..|.+- +.....+...+++.++.++.+|+|
T Consensus 463 ~l~~~~a~KaarfI~~cd~f~iP--lv~LvD-tpGf~~G~~a--------------E~~Gi~~~gAkll~A~a~a~VP~i 525 (793)
T 2x24_A 463 VWFPDSAYKTAQAIKDFNREKLP--LMIFAN-WRGFSGGMKD--------------MYDQVLKFGAYIVDGLRKYRQPVL 525 (793)
T ss_dssp EECHHHHHHHHHHHHHHHTTTCC--EEEECC-BCEECCSHHH--------------HHTTHHHHHHHHHHHHHTCCSCEE
T ss_pred cccHHHHHHHHHHHHHhccCCCC--EEEEec-CCCCCCCHHH--------------HHhhHHHHHHHHHHHHHhcCCCEE
Confidence 58899999999999999765433 444433 3567776633 233456677889999999999999
Q ss_pred EEE--ccccchHHHHH
Q 026127 105 AAV--NGHAAAAGLTL 118 (243)
Q Consensus 105 aav--~G~~~G~G~~l 118 (243)
+.| .|.+.||++.+
T Consensus 526 tvI~r~Ge~~GGa~~~ 541 (793)
T 2x24_A 526 IYIPPYAEVRGGSWAV 541 (793)
T ss_dssp EEECTTCEEEHHHHHT
T ss_pred EEEecCCcccchhHHh
Confidence 999 89887766543
|
| >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A | Back alignment and structure |
|---|
Probab=92.93 E-value=0.44 Score=44.79 Aligned_cols=89 Identities=15% Similarity=0.159 Sum_probs=63.4
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 25 RFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 25 ~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
.++.+......+.++.+++.-.+= +|.+. .-+.|..|.+-+ .....+...+++.++.++.+|+|
T Consensus 448 ~l~pe~a~KaArfI~lcd~~f~iP-Lv~Lv-DtpGf~~G~~aE--------------~~Gi~k~gAkll~A~a~a~VP~i 511 (758)
T 3k8x_A 448 VWHPNSAFKTAQAINDFNNGEQLP-MMILA-NWRGFSGGQRDM--------------FNEVLKYGSFIVDALVDYKQPII 511 (758)
T ss_dssp EECHHHHHHHHHHHHHHHHTSCCC-EEECC-CCCEECCSHHHH--------------HTTHHHHHHHHHHHHHTCCSCEE
T ss_pred CCCHHHHHHHHHHHHHhhhccCCC-EEEEe-cCCCCCCCHHHH--------------HccHHHHHHHHHHHHHhCCCCEE
Confidence 578899999999999988723433 44443 336777777433 23456677889999999999999
Q ss_pred EEEc--cccchHHHHHHHh----cce--eEEecC
Q 026127 105 AAVN--GHAAAAGLTLALS----HDY--VIMRRD 130 (243)
Q Consensus 105 aav~--G~~~G~G~~la~~----~D~--~ia~~~ 130 (243)
+.|- |.+.||++ ++++ +|+ ++|.++
T Consensus 512 tVI~RkGe~~GGA~-~am~~~~~ad~~~v~Awp~ 544 (758)
T 3k8x_A 512 IYIPPTGELRGGSW-VVVDPTINADQMEMYADVN 544 (758)
T ss_dssp EEECTTCEEETHHH-HTTCGGGSTTTEEEEEETT
T ss_pred EEEecCCccchHHH-HHhCcccCCCHHHHhcCCC
Confidence 9998 99988777 5555 344 555554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 243 | ||||
| d1mj3a_ | 260 | c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat | 7e-15 | |
| d1uiya_ | 253 | c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The | 9e-08 | |
| d1dcia_ | 275 | c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2 | 7e-07 | |
| d1pjha_ | 266 | c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2 | 1e-05 | |
| d1q52a_ | 297 | c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter | 4e-05 |
| >d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 69.8 bits (170), Expect = 7e-15
Identities = 36/179 (20%), Positives = 66/179 (36%), Gaps = 16/179 (8%)
Query: 6 KHGDVFVLTLTGSSDVDEHR--FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNG 63
K+ V ++ L + + I+ + A+ + + G A++ T K F+ G
Sbjct: 13 KNSSVGLIQL----NRPKALNALCNGLIEELNQALETFEEDPAVG-AIVLTGGEKAFAAG 67
Query: 64 FDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHD 123
D+ Q R F + + P +AAVNG+A G LA+ D
Sbjct: 68 ADIKEMQN-------RTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCD 120
Query: 124 YVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMG 182
+ +K E+ +G VG + A ++L +I ++A + G
Sbjct: 121 IIYA-GEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAME-MVLTGDRISAQDAKQAG 177
|
| >d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Thermus thermophilus [TaxId: 274]
Score = 49.3 bits (116), Expect = 9e-08
Identities = 50/184 (27%), Positives = 77/184 (41%), Gaps = 13/184 (7%)
Query: 1 MCTLEKHGDVFVLTLTGSSDVDEHR--FGPPAIDSILSAIAKAKAEATPGSALITTSHGK 58
M +EK G V V+ L + E R P S+L A+ +A+ A++ T GK
Sbjct: 1 MVQVEK-GHVAVVFL----NDPERRNPLSPEMALSLLQALDDLEADPGVR-AVVLTGRGK 54
Query: 59 FFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTL 118
FS G DLA+ + E + S + + P PTVAAVNG A A G L
Sbjct: 55 AFSAGADLAFLERVTEL--GAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGL 112
Query: 119 ALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEA 178
AL+ D ++ D+ + + + VG A+ +L + ++ EA
Sbjct: 113 ALACD--LVVMDEEARLGYTEVKIGFVAALVSVILVRAVGEKAAKDLLLT-GRLVEAREA 169
Query: 179 LRMG 182
+G
Sbjct: 170 KALG 173
|
| >d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.7 bits (109), Expect = 7e-07
Identities = 27/162 (16%), Positives = 58/162 (35%), Gaps = 6/162 (3%)
Query: 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTG-----ARE 80
++ K ++ + +++ + F S + A G
Sbjct: 28 MNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAW 87
Query: 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVD 140
L ++ ++ + P P +AA++G G+ L + D +D + EVD
Sbjct: 88 YLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFF-QVKEVD 146
Query: 141 IGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMG 182
+GL +G+ + ++ A+K+ +EAL G
Sbjct: 147 VGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSG 188
|
| >d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.1 bits (100), Expect = 1e-05
Identities = 34/214 (15%), Positives = 62/214 (28%), Gaps = 13/214 (6%)
Query: 3 TLEKHGDVFVLTLTGSSDVDEHR--FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
+ G F++ L ++ + + A +I +S F
Sbjct: 8 SYRIEGPFFIIHL----INPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFS 63
Query: 61 SNGFDLAWAQAAGSRTGARER-----LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAG 115
S A+A G T + V V A + + +NG A
Sbjct: 64 SGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLS 123
Query: 116 LTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKG 175
L D V DK L ++GL + L+ K K
Sbjct: 124 AALVALCDIVYSINDKVYLLYPFANLGLITEGGTTV-SLPLKFGTNTTYECLMFNKPFKY 182
Query: 176 EEALRMGLVEAAYDSEEQVAEA-SMRLAKQLAGR 208
+ G + ++ AEA + ++ ++L +
Sbjct: 183 DIMCENGFISKNFNMPSSNAEAFNAKVLEELREK 216
|
| >d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Naphthoate synthase MenB species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 41.7 bits (96), Expect = 4e-05
Identities = 29/155 (18%), Positives = 53/155 (34%), Gaps = 18/155 (11%)
Query: 3 TLEKHGDVFVLTLTGSSDVDEHR--FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
T +H D + + + E R F P +D + + A+ G L+T +G
Sbjct: 21 TYHRHVDDATVRVA--FNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLT-GNGPSP 77
Query: 61 SNGFDL-------------AWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVAAV 107
+G + A+G + V + +P + V
Sbjct: 78 KDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLV 137
Query: 108 NGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIG 142
NG AA G +L + D + R+ ++ D+G
Sbjct: 138 NGWAAGGGHSLHVVCDLTLASREYARFKQTDADVG 172
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 243 | |||
| d2a7ka1 | 230 | Carbapenem biosynthes protein CarB {Pectobacterium | 100.0 | |
| d2f6qa1 | 245 | Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human ( | 100.0 | |
| d1nzya_ | 269 | 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., | 100.0 | |
| d2fw2a1 | 258 | Chromodomain protein CDY2A {Human (Homo sapiens) [ | 100.0 | |
| d1uiya_ | 253 | Enoyl-CoA hydratase (crotonase) {Thermus thermophi | 100.0 | |
| d1sg4a1 | 249 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 100.0 | |
| d1wz8a1 | 263 | Probable enoyl-CoA hydratase TTHA0218 {Thermus the | 100.0 | |
| d1mj3a_ | 260 | Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve | 100.0 | |
| d1pjha_ | 266 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 100.0 | |
| d1szoa_ | 249 | 6-oxo camphor hydrolase {Rhodococcus erythropolis | 100.0 | |
| d1ef8a_ | 261 | Methylmalonyl CoA decarboxylase {Escherichia coli | 100.0 | |
| d1dcia_ | 275 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 100.0 | |
| d1wdka4 | 310 | Fatty oxidation complex alpha subunit, N-terminal | 100.0 | |
| d1hzda_ | 266 | AUH protein {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1q52a_ | 297 | Naphthoate synthase MenB {Mycobacterium tuberculos | 100.0 | |
| d1yg6a1 | 183 | Clp protease, ClpP subunit {Escherichia coli [TaxI | 98.67 | |
| d2cbya1 | 179 | Clp protease, ClpP subunit {Mycobacterium tubercul | 98.6 | |
| d2f6ia1 | 190 | Clp protease, ClpP subunit {Plasmodium falciparum | 98.52 | |
| d1y7oa1 | 192 | Clp protease, ClpP subunit {Streptococcus pneumoni | 98.45 | |
| d1tg6a1 | 193 | Clp protease, ClpP subunit {Human (Homo sapiens), | 98.36 | |
| d1xnya1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 98.18 | |
| d2a7sa1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 98.17 | |
| d1on3a1 | 253 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 98.09 | |
| d2f9ya1 | 316 | Acetyl-coenzyme A carboxylase carboxyl transferase | 98.07 | |
| d1vrga1 | 251 | Propionyl-CoA carboxylase complex B subunit, PccB | 98.01 | |
| d2f9yb1 | 263 | Acetyl-coenzyme A carboxylase carboxyl transferase | 97.67 | |
| d1pixa2 | 287 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 97.56 | |
| d1vrga2 | 264 | Propionyl-CoA carboxylase complex B subunit, PccB | 97.56 | |
| d1xnya2 | 263 | Propionyl-CoA carboxylase complex B subunit, PccB | 97.49 | |
| d2a7sa2 | 271 | Propionyl-CoA carboxylase complex B subunit, PccB | 97.31 | |
| d1on3a2 | 264 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 97.15 | |
| d1uyra1 | 333 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 96.67 | |
| d1pixa3 | 299 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 96.32 | |
| d1uyra2 | 404 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 94.22 |
| >d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Carbapenem biosynthes protein CarB species: Pectobacterium carotovorum [TaxId: 554]
Probab=100.00 E-value=1.4e-52 Score=345.27 Aligned_cols=222 Identities=20% Similarity=0.293 Sum_probs=203.4
Q ss_pred CceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchH
Q 026127 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGAR 79 (243)
Q Consensus 1 ~~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~ 79 (243)
|+..+.+|+|++||||||+ +.|++|.+|+.+|.++++++++|+++| +||++|.| ++||+|.|++++..... .
T Consensus 1 ~~~~~~~d~I~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~i~-~vVl~~~g~~~F~aG~Dl~~~~~~~~----~ 73 (230)
T d2a7ka1 1 MVFEENSDEVRVITLDHPN--KHNPFSRTLETSVKDALARANADDSVR-AVVVYGGAERSFSAGGDFNEVKQLSR----S 73 (230)
T ss_dssp CEEEEEETTEEEEEECCSS--TTCBCCHHHHHHHHHHHHHHHHCTTCC-EEEEECCTTSCSBCBSCHHHHHTC-C----H
T ss_pred CEEEEecCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHHhCCccc-ccceeccchhhhhhhccccccccccc----c
Confidence 3556678999999999998 899999999999999999999999999 88888876 89999999999976432 4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCC
Q 026127 80 ERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGS 159 (243)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~ 159 (243)
+....+.+.+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+.++++++|
T Consensus 74 ~~~~~~~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~G~-~p~~g~~~l~~~iG- 150 (230)
T d2a7ka1 74 EDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMAST-ANFVMPELKHGI-GCSVGAAILGFTHG- 150 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETT-CEEECCGGGGTC-CCHHHHHHHHHHHC-
T ss_pred cccccchhhhhhhhhcccchhcceeeecccccccccccchhccchhhcccc-chhhhccccccc-cccccccccccccc-
Confidence 556677888999999999999999999999999999999999999999998 899999999999 79999889999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhccchh
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLGLDMR 235 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~~~~~ 235 (243)
...+++++++|+.++|+||+++||||+|+++ +++.+++.++++++++.| +.++..+|+.++..+...+++..+
T Consensus 151 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~ia~~~--~~a~~~~K~~l~~~~~~~l~~~~~ 223 (230)
T d2a7ka1 151 FSTMQEIIYQCQSLDAPRCVDYRLVNQVVES-SALLDAAITQAHVMASYP--ASAFINTKRAVNKPFIHLLEQTRD 223 (230)
T ss_dssp HHHHHHHHHHCCCBCHHHHHHHTCCSEEECH-HHHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccchHHHHHHhhhcccCCCh-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999999999999999999999997 899999999999999998 999999999999888877774443
|
| >d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-50 Score=335.87 Aligned_cols=219 Identities=18% Similarity=0.232 Sum_probs=194.8
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|+. . +||++|.|+.||+|+|++++..... ......
T Consensus 5 i~~~~~~gi~~Itlnrp~--~~Nals~~~~~~l~~~l~~~~~d~~-v-~vvl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~ 79 (245)
T d2f6qa1 5 LVVTSEDGITKIMFNRPK--KKNAINTEMYHEIMRALKAASKDDS-I-ITVLTGNGDYYSSGNDLTNFTDIPP-GGVEEK 79 (245)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHSSC-S-EEEEEESTTCSBCCBCC----CCCT-THHHHH
T ss_pred EEEEEECCEEEEEEcCCC--cCCCCCHHHHHHHHHHHHHHhcCCc-e-EEeecCCCccccCCccchhhhcccc-cccccc
Confidence 678999999999999997 8999999999999999999999876 4 7999999999999999999876433 333455
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
.......+.+++.+|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| .+++++++| .
T Consensus 80 ~~~~~~~~~~~~~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~~g-~ 156 (245)
T d2f6qa1 80 AKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDR-ATFHTPFSHLGQ-SPEGCSSYTFPKIMS-P 156 (245)
T ss_dssp HHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETT-CEEECCTGGGTC-CCCTTHHHHHHHHHC-H
T ss_pred cchhhhHHHHHHhhhhhcCCceEEEECCccccccccchhhhhhhhhhcc-CeEecccccCCC-Cccccchhhcccccc-c
Confidence 5666777889999999999999999999999999999999999999998 899999999999 67776 569999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhc
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLG 231 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~ 231 (243)
.++++++++|+.++|+||+++||||+|+|+ +++.+++.++|+++++.| +.++..+|+.++......++
T Consensus 157 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~ 224 (245)
T d2f6qa1 157 AKATEMLIFGKKLTAGEACAQGLVTEVFPD-STFQKEVWTRLKAFAKLP--PNALRISKEVIRKREREKLH 224 (245)
T ss_dssp HHHHHHHTTCCCEEHHHHHHTTSCSEEECT-TTHHHHHHHHHHHHTTSC--HHHHHHHHHHHHGGGHHHHH
T ss_pred chhhhhcccccccccccccccccccccCCc-chHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhhhcCHH
Confidence 999999999999999999999999999998 899999999999999998 99999999999876555544
|
| >d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 4-Chlorobenzoyl-CoA dehalogenase species: Pseudomonas sp., strain CBS-3 [TaxId: 306]
Probab=100.00 E-value=2.1e-50 Score=339.66 Aligned_cols=218 Identities=20% Similarity=0.295 Sum_probs=195.1
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
|.++++|||++||||||+ +.|++|.+|+.+|.++++.+++|++++ +||+||.|+.||+|+|++++..........+.
T Consensus 5 i~~~i~dgVa~Itlnrp~--~~Nal~~~~~~el~~~l~~~~~d~~i~-~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 81 (269)
T d1nzya_ 5 IGHRVEDGVAEITIKLPR--HRNALSVKAMQEVTDALNRAEEDDSVG-AVMITGAEDAFCAGFYLREIPLDKGVAGVRDH 81 (269)
T ss_dssp EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCSBCCBCGGGSCSSSHHHHHHHH
T ss_pred eEEEEECCEEEEEEcCCC--cCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEeCCcccccchhhHHHHhhcccccchhhH
Confidence 678999999999999997 899999999999999999999999999 99999999999999999987542111111234
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCH
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~ 160 (243)
.......+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||.++|+ +|++| ..++++++| .
T Consensus 82 ~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~-a~~~~~~~~~g~-~~~~g~~~~l~~~ig-~ 158 (269)
T d1nzya_ 82 FRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADS-AKFVCAWHTIGI-GNDTATSYSLARIVG-M 158 (269)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCHHHHTC-CCCTTHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHhhcchhehhhhhhcCCCceeeeecccHhhhhhh-hhhccccccccc-ccccccccccccccC-h
Confidence 4455566788999999999999999999999999999999999999988 899999999999 56665 679999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCG 228 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~ 228 (243)
..+++++++|+.|+|+||+++||||+|+++ +++.+++.++|+++++.| +.++..+|+.++..+..
T Consensus 159 ~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~ 223 (269)
T d1nzya_ 159 RRAMELMLTNRTLYPEEAKDWGLVSRVYPK-DEFREVAWKVARELAAAP--THLQVMAKERFHAGWMQ 223 (269)
T ss_dssp HHHHHHHHHCCCBCHHHHHHHTSCSCEECH-HHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHTTS
T ss_pred hhhhhccccccccchhHHHHcCCccccccc-cccccchhhhhhhhhhhh--HHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999997 899999999999999998 99999999999766443
|
| >d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Chromodomain protein CDY2A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-49 Score=332.95 Aligned_cols=219 Identities=19% Similarity=0.286 Sum_probs=196.8
Q ss_pred ceeeEeCcEEEEEEc-CCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLT-GSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln-~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.++++++|++|++| ||+ +.|++|.+|+.+|.++++.++.| +++ +||+||.|+.||+|+|+.++..... .....
T Consensus 4 i~v~~~~gi~~i~l~~rp~--~~Nals~~~~~el~~al~~~~~d-~~~-~vvl~g~g~~FsaG~Dl~~~~~~~~-~~~~~ 78 (258)
T d2fw2a1 4 IVVKKEDGFTQIVLSTRST--EKNALNTEVIKEMVNALNSAAAD-DSK-LVLFSAAGSVFCCGLDFGYFVRHLR-NDRNT 78 (258)
T ss_dssp EEEEEETTEEEEEECCSSS--STTCBCHHHHHHHHHHHHHHHHS-SCS-EEEEEECSSCSBCCBCHHHHHHHHH-HCHHH
T ss_pred EEEEEECCEEEEEECCCCc--ccCCCCHHHHHHHHHHHHHHHcC-CCE-EEEEecCccccccccccchhhhccc-ccccc
Confidence 678899999999998 687 89999999999999999999987 568 9999999999999999999865322 12234
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
...++.+.+++++..+.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 79 ~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~ig- 155 (258)
T d2fw2a1 79 ASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEK-AWFQTPYTTFGQ-SPDGCSSITFPKMMG- 155 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETT-CEEECCHHHHTC-CCCTTHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHhhhccceeeeeecccccccccccccccccccceecc-cceeeccccccc-cccccccccchhhcC-
Confidence 45577888999999999999999999999999999999999999999998 899999999999 67765 578999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhc
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLG 231 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~ 231 (243)
...+++++++|++++|+||+++||||+|+++ +++.+++.++++++++.| +.+++.+|+.++......++
T Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~i~~~~--~~a~~~~K~~~~~~~~~~l~ 224 (258)
T d2fw2a1 156 KASANEMLIAGRKLTAREACAKGLVSQVFLT-GTFTQEVMIQIKELASYN--AIVLEECKALVRCNIKLELE 224 (258)
T ss_dssp HHHHHHHHTTCCEEEHHHHHHTTSCSEEECS-TTHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhccCcccccccccccccccccccc-cccccccchhhhhhhhhh--HHHHHHHHHHHHHhhcCCHH
Confidence 9999999999999999999999999999998 899999999999999998 89999999999876655544
|
| >d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1e-49 Score=332.44 Aligned_cols=215 Identities=29% Similarity=0.375 Sum_probs=195.3
Q ss_pred CceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
|+.+++ |+|++||||||+ +.|++|.+|+.+|.++++++++|++++ +||+||.|+.||+|.|+..+..... ....
T Consensus 1 ~v~ie~-G~va~Itlnrp~--~~Nal~~~~~~el~~~l~~~~~d~~v~-~vvl~g~g~~f~aG~dl~~~~~~~~--~~~~ 74 (253)
T d1uiya_ 1 MVQVEK-GHVAVVFLNDPE--RRNPLSPEMALSLLQALDDLEADPGVR-AVVLTGRGKAFSAGADLAFLERVTE--LGAE 74 (253)
T ss_dssp CEEEEC-SSEEEEEECCGG--GTCCCCHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSCSBCCCCHHHHHHHTT--SCHH
T ss_pred CEEEee-CCEEEEEEcCCC--cCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEecccccccccchhHHhhhccc--cCcc
Confidence 455653 679999999997 789999999999999999999999999 9999999999999999998876432 2245
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCH
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSA 160 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~ 160 (243)
....+...++.++..|.++||||||+|||+|+|||++|+++||+||++++ ++|++||.++|+ +|.+++.++++++| .
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~-a~~~~~e~~~g~-~~~~~~~~l~~~~g-~ 151 (253)
T d1uiya_ 75 ENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEE-ARLGYTEVKIGF-VAALVSVILVRAVG-E 151 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETT-CEEECCHHHHTC-CCHHHHHHHHHHSC-H
T ss_pred cccchhhhhhhhhhHHhcCCCCEEEEeCeEEehhhHHHHhhhhhhhhhhh-hHHhhhhccccc-ccccchhhhhcccC-H
Confidence 55666777889999999999999999999999999999999999999998 899999999999 78877889999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
.++++++++|++++|+||+++||||+|+++ +++.+.+.++++++++.| +.++..+|+.++....
T Consensus 152 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-~~~~~~a~~~a~~~~~~~--~~a~~~~K~~l~~~~~ 215 (253)
T d1uiya_ 152 KAAKDLLLTGRLVEAREAKALGLVNRIAPP-GKALEEAKALAEEVAKNA--PTSLRLTKELLLALPG 215 (253)
T ss_dssp HHHHHHHHHCCEEEHHHHHHHTSCSEEECT-TCHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHGGG
T ss_pred HHHHHHhhcCcCCCHHHHHHhCCCcccccc-cccchhHHHHHHhhcccc--hHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999998 789999999999999998 8999999999876543
|
| >d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=100.00 E-value=3.2e-49 Score=328.84 Aligned_cols=215 Identities=17% Similarity=0.241 Sum_probs=194.3
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCC-cccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGK-FFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~-~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
|.++.++||++|||||| +.|++|.+|+.+|.++++.+++|++++ +||++|.|+ +||+|+|++++... ...
T Consensus 6 ve~~~~~gIa~itln~p---~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vvl~g~g~~~Fs~G~Dl~~~~~~-----~~~ 76 (249)
T d1sg4a1 6 VEPDAGAGVAVMKFKNP---PVNSLSLEFLTELVISLEKLENDKSFR-GVILTSDRPGVFSAGLDLTEMCGR-----SPA 76 (249)
T ss_dssp EEEETTTTEEEEEECCT---TTTEECHHHHHHHHHHHHHHHHCTTCC-EEEEEESSTEESCCEECGGGGSSC-----CHH
T ss_pred EEEECCCCEEEEEECCC---CcCCCCHHHHHHHHHHHHHHHhCCCcc-EEEEEeccceeEeccccccccccc-----ccc
Confidence 44555688999999999 679999999999999999999999999 999999874 79999999988542 256
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCcee--eccccccCcCCChhh-HHHHHHHh
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVL--YMSEVDIGLTLPDYF-AALFRAKV 157 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f--~~pe~~~Gl~~p~~g-~~~l~~~~ 157 (243)
....+...+++++.++.++||||||+|||+|+|+|++|+++||+||++++ ++| ++||+++|+ +|++| .+++++++
T Consensus 77 ~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~~~pe~~~Gl-~p~~g~~~~l~~~i 154 (249)
T d1sg4a1 77 HYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADN-PRYCIGLNETQLGI-IAPFWLKDTLENTI 154 (249)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECC-TTCCBSCCGGGGTC-CCCHHHHHHHHHHH
T ss_pred cccccchhhHHHHHhhhcCccccchhhcccccccccccccccccceeecc-cccccccccccccc-cccccccccccccc
Confidence 66778888999999999999999999999999999999999999999998 555 789999999 56655 67999999
Q ss_pred CCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhc
Q 026127 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLG 231 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~ 231 (243)
| ...+++++++|++++|++|+++||||+|+|+ +++.+++.+++++++..| +.+++.+|+.++......+.
T Consensus 155 G-~~~a~~lll~g~~~~a~~A~~~Glv~~v~~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~~~~~~~~~l~ 224 (249)
T d1sg4a1 155 G-HRAAERALQLGLLFPPAEALQVGIVDQVVPE-EQVQSTALSAIAQWMAIP--DHARQLTKAMMRKATASRLV 224 (249)
T ss_dssp C-HHHHHHHHHHTCCBCHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred c-cccccccccccccccHHHHHhhccccccCCh-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCHH
Confidence 9 9999999999999999999999999999997 899999999999999998 99999999999887766655
|
| >d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Probable enoyl-CoA hydratase TTHA0218 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.3e-49 Score=333.71 Aligned_cols=212 Identities=24% Similarity=0.308 Sum_probs=192.9
Q ss_pred ceeeE-eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 ~~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
+.+++ ++||++|+| ||+ +.|++|.+|+.+|.++++++++|++|| +|||||.|++||+|+|++++.... ...+
T Consensus 11 i~~~~~~~gV~~itl-rp~--~~Nal~~~m~~el~~~~~~~~~d~~vr-~vvl~g~g~~FsaG~Dl~~~~~~~---~~~~ 83 (263)
T d1wz8a1 11 LAFAWPRPGVLEITF-RGE--KLNAMPPALHRGLARVWRDLEAVEGVR-AVLLRGEGGVFSAGGSFGLIEEMR---ASHE 83 (263)
T ss_dssp EEEEEEETTEEEEEE-CCS--GGGCBCHHHHHHHHHHHHHHTTCTTCS-EEEEEEGGGCCBCCBCHHHHHHHH---HCHH
T ss_pred EEEEEcCCCEEEEEE-CCC--CCCCCCHHHHHHHHHHHHHHhhCCCCe-EEEEecccccccccchhhhhhhhc---cccc
Confidence 34665 678999999 686 899999999999999999999999999 999999999999999999886531 1145
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
....+....++++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 84 ~~~~~~~~~~~~~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl-~p~~~~~~~l~~~~G- 160 (263)
T d1wz8a1 84 ALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKG-TRLLDGHLRLGV-AAGDHAVLLWPLLVG- 160 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCHHHHTS-CCTTTHHHHTHHHHC-
T ss_pred ccccchhhhhHHHHHhhhhhcceeeecccccccccccccccccccccccc-cccccccccccc-ccccccccccccccc-
Confidence 56677778899999999999999999999999999999999999999998 899999999999 67776 578899999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
...+++++++|++++|+||+++||||+|+++ +++.+++.++|++++..| +.++..+|+.++...
T Consensus 161 ~~~a~~l~l~g~~i~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~al~~~K~~l~~~~ 224 (263)
T d1wz8a1 161 MAKAKYHLLLNEPLTGEEAERLGLVALAVED-EKVYEKALEVAERLAQGP--KEALHHTKHALNHWY 224 (263)
T ss_dssp HHHHHHHHHHTCCEEHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHH
T ss_pred cchhhhhcccccccchhHHHhcCCcccccch-hhhhHHHHHHHHHhhccH--HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 899999999999999998 999999999987654
|
| >d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=2.6e-50 Score=337.36 Aligned_cols=211 Identities=21% Similarity=0.282 Sum_probs=189.2
Q ss_pred CceeeEe---CcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcc
Q 026127 1 MCTLEKH---GDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTG 77 (243)
Q Consensus 1 ~~~~~~~---~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~ 77 (243)
+|.++++ ++|++||||||+ +.|++|.+|+++|.++++++++|++++ +||+||.|+.||+|.|++++... .
T Consensus 5 ~i~~e~~g~~~~I~~itlnrP~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vvl~g~g~~F~aG~Dl~~~~~~---~- 77 (260)
T d1mj3a_ 5 YIITEKKGKNSSVGLIQLNRPK--ALNALCNGLIEELNQALETFEEDPAVG-AIVLTGGEKAFAAGADIKEMQNR---T- 77 (260)
T ss_dssp SEEEEEESGGGCEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEECCSSEEECCBCHHHHTTC---C-
T ss_pred EEEEEEEcCCCCEEEEEEcCCC--cCCCCCHHHHHHHHHHHHHHHhCCCcc-eEEEecccccccccchhhhhhcc---c-
Confidence 3677776 589999999997 889999999999999999999999999 99999999999999999998652 1
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHH
Q 026127 78 ARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAK 156 (243)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~ 156 (243)
....+...+.+++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++++++
T Consensus 78 ---~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl-~p~~~~~~~l~~~ 152 (260)
T d1mj3a_ 78 ---FQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEK-AQFGQPEILLGT-IPGAGGTQRLTRA 152 (260)
T ss_dssp ---HHHHHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECGGGGGTC-CCCSSTTTHHHHH
T ss_pred ---hhhhhHHHHHHHHHHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCC-CEEECchhccCc-CCcccHHHHHHHH
Confidence 11234455677888999999999999999999999999999999999988 899999999999 67776 5689999
Q ss_pred hCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 157 VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
+| ...+++++++|++|+++||+++|||++|+++ +++.+.+.+++++++..+ +.++..+|+.++....
T Consensus 153 ig-~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-~~~~~~a~~~a~~i~~~~--~~a~~~~K~~l~~~~~ 219 (260)
T d1mj3a_ 153 VG-KSLAMEMVLTGDRISAQDAKQAGLVSKIFPV-ETLVEEAIQCAEKIANNS--KIIVAMAKESVNAAFE 219 (260)
T ss_dssp HC-HHHHHHHHHHCCCEEHHHHHHHTSCSEEECT-TTHHHHHHHHHHHHHHSC--HHHHHHHHHHHHGGGS
T ss_pred hC-HHHHHHHHHcCcccCchhhccCCCceeeecc-cccccccccccccccchh--hHHHHHHHHHHHHHHh
Confidence 99 9999999999999999999999999999998 889999999999999998 9999999999876543
|
| >d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1e-48 Score=328.84 Aligned_cols=224 Identities=17% Similarity=0.172 Sum_probs=189.2
Q ss_pred CceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCC-----
Q 026127 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSR----- 75 (243)
Q Consensus 1 ~~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~----- 75 (243)
.|.++++|+|++|+||||+ +.|++|.+|+.+|.++++++++|++++ +|||+|.|++||+|+|++++.....+
T Consensus 6 ~i~~~~~~~v~~Itlnrp~--~~Na~~~~~~~el~~al~~~~~d~~v~-~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~ 82 (266)
T d1pjha_ 6 KISYRIEGPFFIIHLINPD--NLNALEGEDYIYLGELLELADRNRDVY-FTIIQSSGRFFSSGADFKGIAKAQGDDTNKY 82 (266)
T ss_dssp TEEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEECBTTBSBCCBCHHHHHC-------CC
T ss_pred eEEEEEECCEEEEEEcCCC--cCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEeccccccccchhHHHHHhccccccccc
Confidence 3788999999999999997 889999999999999999999999999 99999999999999999998653210
Q ss_pred -cchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHH
Q 026127 76 -TGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALF 153 (243)
Q Consensus 76 -~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l 153 (243)
....+....+...+..++..+.++||||||+|||+|+|||++|+++||+|||++++++|++||+++|+ +|++| ++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl-~p~~g~~~~l 161 (266)
T d1pjha_ 83 PSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGL-ITEGGTTVSL 161 (266)
T ss_dssp SSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTC-CCCTTHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhcchhhhhhhhcccccccccchhccchhhhhhcccccccccccccc-cccccccccc
Confidence 11134455667778889999999999999999999999999999999999998776789999999999 78776 5799
Q ss_pred HHHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHH-HH----HHHHHHHHHhcCCCChhHHHHHHHHHhHHHHH
Q 026127 154 RAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQV-AE----ASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCG 228 (243)
Q Consensus 154 ~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l-~~----~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~ 228 (243)
++++| ...+++++++|+.++|+||+++||||+|+++++.. ++ .+.++++++...+ +.++..+|+.++....+
T Consensus 162 ~r~~g-~~~a~~llltg~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~s~~~~K~~l~~~~~~ 238 (266)
T d1pjha_ 162 PLKFG-TNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLY--LPSCLGMKKLLKSNHID 238 (266)
T ss_dssp HHHHC-HHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHTTTHH
T ss_pred ccccc-cchhhhhhccCCcCCHHHHHHCCCEeEeeCchhhhHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhhHH
Confidence 99999 99999999999999999999999999999863221 11 2345566666666 78899999988766655
Q ss_pred Hhc
Q 026127 229 VLG 231 (243)
Q Consensus 229 ~l~ 231 (243)
.++
T Consensus 239 ~~~ 241 (266)
T d1pjha_ 239 AFN 241 (266)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 6-oxo camphor hydrolase species: Rhodococcus erythropolis [TaxId: 1833]
Probab=100.00 E-value=2.7e-48 Score=323.20 Aligned_cols=215 Identities=19% Similarity=0.281 Sum_probs=196.6
Q ss_pred ceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHH
Q 026127 2 CTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 ~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 81 (243)
|.++++|+|++|+||+|+ +.|++|.+|+.+|.++++++++|+++| +||++|.|++||+|.|++++.. ...+.
T Consensus 15 i~~~~~~~v~~itln~p~--~~Nal~~~~~~el~~al~~~~~d~~v~-~vvl~g~g~~FsaG~Dl~~~~~-----~~~~~ 86 (249)
T d1szoa_ 15 IRLERDGGVLLVTVHTEG--KSLVWTSTAHDELAYCFHDIACDRENK-VVILTGTGPSFCNEIDFTSFNL-----GTPHD 86 (249)
T ss_dssp EEEEEETTEEEEEECBTT--BSCEECHHHHHHHHHHHHHHHHCTTCC-EEEEECBTTBSBCEECGGGSCC-----SSHHH
T ss_pred EEEEEECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHHhCCCcc-eEeeecccccccccchhhhhhc-----ccccc
Confidence 678999999999999997 889999999999999999999999999 9999999999999999998753 22556
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCcee-eccccccCcCCChhh-HHHHHHHhCC
Q 026127 82 LHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVL-YMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f-~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
...+...+++++.++.++|||||+++||+|.| |++|+++||+||++++ ++| ++||.++|+ +|++| ++++++++|
T Consensus 87 ~~~~~~~~~~l~~~i~~~~~pvIa~v~g~~~G-G~~l~l~~D~ria~~~-a~f~~~pe~~~g~-~p~~g~~~~l~r~ig- 162 (249)
T d1szoa_ 87 WDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTN-APEIPVMSDIVLAAES-ATFQDGPHFPSGI-VPGDGAHVVWPHVLG- 162 (249)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCEEEEECSCBCS-STHHHHTSSEEEEETT-CEEECTTSGGGTC-CCTTTHHHHHHHHHC-
T ss_pred hhhhhhhhhhhhhhcccCcccceeeecccccc-ccccccccccccccCC-cEEEEeecccccc-ccccccccccccccC-
Confidence 66777888999999999999999999998865 7789999999999998 667 589999999 78876 579999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHHhc
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCGVLG 231 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~~l~ 231 (243)
...+++++++|++++++||+++||||+|+++ +++.+++.++++++++.| +.+++.+|+.+++.+...++
T Consensus 163 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~~e 231 (249)
T d1szoa_ 163 SNRGRYFLLTGQELDARTALDYGAVNEVLSE-QELLPRAWELARGIAEKP--LLARRYARKVLTRQLRRVME 231 (249)
T ss_dssp HHHHHHHHHTTCEEEHHHHHHHTSCSEEECH-HHHHHHHHHHHHHHHTSC--HHHHHHHHHHHSHHHHHHHH
T ss_pred ccceeeecccCCCCCHHHHHHhCCcCcccCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHhccHH
Confidence 9999999999999999999999999999997 899999999999999998 99999999999988766655
|
| >d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Methylmalonyl CoA decarboxylase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-48 Score=327.74 Aligned_cols=210 Identities=16% Similarity=0.291 Sum_probs=185.1
Q ss_pred CceeeEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC--CCcccCCCChhhHHhcCCCcch
Q 026127 1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH--GKFFSNGFDLAWAQAAGSRTGA 78 (243)
Q Consensus 1 ~~~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~--g~~F~~G~Dl~~~~~~~~~~~~ 78 (243)
+|.++++|+|++|+||+|+ +.|++|.+|+.+|.+++++++ +++++ +|||+|. |++||+|+|++++..... +
T Consensus 5 ~i~~~~~~~v~~Itlnrp~--~~Nal~~~~~~~l~~al~~~~-~~~~~-~vVl~g~~g~~~F~aG~Dl~~~~~~~~-~-- 77 (261)
T d1ef8a_ 5 YVNVVTINKVAVIEFNYGR--KLNALSKVFIDDLMQALSDLN-RPEIR-CIILRAPSGSKVFSAGHDIHELPSGGR-D-- 77 (261)
T ss_dssp SEEEEEETTEEEEEECCGG--GTTCCCHHHHHHHHHHHHHTC-STTCC-EEEEECCTTCSEEECCSCSTTC------C--
T ss_pred EEEEEEECCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHh-CCCCE-EEEEeccccchhhcccccccccccCCc-c--
Confidence 4789999999999999997 889999999999999999997 45788 8888875 589999999998865322 1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHh
Q 026127 79 RERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKV 157 (243)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~ 157 (243)
...+.+.+++++.+|.++||||||+|||+|+|||++|+++||+||++++ ++|++||.++|+ +|+++ ..++++.+
T Consensus 78 ---~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~-a~~~~pe~~~Gl-~~~~~~~~~l~r~~ 152 (261)
T d1ef8a_ 78 ---PLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAAST-STFSMTPVNLGV-PYNLVGIHNLTRDA 152 (261)
T ss_dssp ---TTCTTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCHHHHTC-CCCHHHHHTTSSSS
T ss_pred ---ccccccchhhhHHHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHh-HHHhhhhccccc-cccccccccccccc
Confidence 1123455678999999999999999999999999999999999999998 899999999999 67775 56899999
Q ss_pred CCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 026127 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDL 226 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~ 226 (243)
| ..++++++++|+.++|+||+++||||+|+++ +++.+++.+++++++..| +.++..+|+.++...
T Consensus 153 g-~~~a~~~~l~g~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 217 (261)
T d1ef8a_ 153 G-FHIVKELIFTASPITAQRALAVGILNHVVEV-EELEDFTLQMAHHISEKA--PLAIAVIKEELRVLG 217 (261)
T ss_dssp C-HHHHHHHHHHCCCEEHHHHHHTTSCSEEECH-HHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHH
T ss_pred C-ccccccccccCceEcHHHHHHcCCcceeeec-hhhhhhhHHHHHHHHhcC--cHHHHHHHHHHHHHH
Confidence 9 9999999999999999999999999999998 889999999999999998 999999999886543
|
| >d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=3.2e-47 Score=321.05 Aligned_cols=217 Identities=18% Similarity=0.292 Sum_probs=189.4
Q ss_pred eEeCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCc---c---h
Q 026127 5 EKHGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRT---G---A 78 (243)
Q Consensus 5 ~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~---~---~ 78 (243)
+.+++|++||||||+ +.|++|.+|+.+|.++++.+++|++++ +||+||.|+.||+|+|+.++......+ . .
T Consensus 9 ~~~~~I~~itlnrP~--~~Nals~~m~~el~~~l~~~~~d~~v~-~vvltg~~~~F~aG~dl~~~~~~~~~~~~~~~~~~ 85 (275)
T d1dcia_ 9 SAQKHVLHVQLNRPE--KRNAMNRAFWRELVECFQKISKDSDCR-AVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARI 85 (275)
T ss_dssp EEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHTCTTCC-EEEEEESTTCSBCCBCHHHHHHHHTSCCCSSHHHH
T ss_pred EccCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEeccccccccCccHHHhhhcccccccccccch
Confidence 448899999999997 899999999999999999999999999 999999999999999999876532211 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHh
Q 026127 79 RERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKV 157 (243)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~ 157 (243)
......+...+++++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|+++ ..++++++
T Consensus 86 ~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~-a~f~~pe~~~Gl-~p~~~~~~~~~~~~ 163 (275)
T d1dcia_ 86 AWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQD-AFFQVKEVDVGL-AADVGTLQRLPKVI 163 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETT-CEEECCGGGGTS-CCCSSHHHHGGGTC
T ss_pred hhhhccchhhhHHHHHHHHhcCCCEEEEEeeEeehhhHHHHhhcCchhhccC-ccccchhccccc-cccccccccccccc
Confidence 1234456667788999999999999999999999999999999999999998 799999999999 67766 56888888
Q ss_pred CCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHH
Q 026127 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLCG 228 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~~ 228 (243)
|...++++++++|+.++++||+++||||+|+++.+++.+.+.++++++++.+ |.+++.+|+.++.....
T Consensus 164 g~~~~~~~ll~~g~~~~a~eA~~~Glv~~v~~~~~~l~~~~~~~a~~i~~~~--p~a~~~~K~~l~~~~~~ 232 (275)
T d1dcia_ 164 GNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKS--PVAVQGSKINLIYSRDH 232 (275)
T ss_dssp SCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHS
T ss_pred ccccccccccccccccchhhhccCCCceeeeehhhhhhhccccccccccccc--HHHHHHHHHHHHHHhcC
Confidence 8566667899999999999999999999999986667888899999999998 99999999998765443
|
| >d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Fatty oxidation complex alpha subunit, N-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=100.00 E-value=1.2e-46 Score=322.31 Aligned_cols=200 Identities=21% Similarity=0.324 Sum_probs=179.3
Q ss_pred eeeE-eCcEEEEEEc-CCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHH
Q 026127 3 TLEK-HGDVFVLTLT-GSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 3 ~~~~-~~~v~~i~ln-~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (243)
.+++ ++||++|+|| +|+ +.|++|.+|+.+|.++++.++.|++++ +||++|.|+.||+|.|++++..... .. ..
T Consensus 9 ~~~~~~~gva~i~ln~~p~--~~Nal~~~~~~el~~al~~~~~d~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~-~~ 83 (310)
T d1wdka4 9 TVTALESGIVELKFDLKGE--SVNKFNRLTLNELRQAVDAIKADASVK-GVIVSSGKDVFIVGADITEFVENFK-LP-DA 83 (310)
T ss_dssp EEEECGGGEEEEEECCTTS--SSCBCCHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSSSBBCCCHHHHHHHTT-SC-HH
T ss_pred EEEEecCCEEEEEECCCCc--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCccchhhhhhhhhccc-cc-ch
Confidence 3444 7899999998 786 899999999999999999999999999 9999999999999999999876433 22 23
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCC
Q 026127 81 RLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~ 159 (243)
........+++++.+|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++|
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~-a~f~~pe~~~Gl-~P~~gg~~~L~r~iG- 160 (310)
T d1wdka4 84 ELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADS-AKIGLPEVKLGI-YPGFGGTVRLPRLIG- 160 (310)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETT-CEEECGGGGGTC-CCCSSHHHHHHHHHC-
T ss_pred hhhhhhhHHHHHHHHhhcCCccceeeccccccccccccchhhhhhhcccc-ceecccccccCC-Cccccchhhhhhhhh-
Confidence 33344456788999999999999999999999999999999999999998 899999999999 78776 579999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCC
Q 026127 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWA 211 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~ 211 (243)
...+++++++|+.++|+||+++||||+|+|+ +++.+.+.+++++++..+++
T Consensus 161 ~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~~~~~~~~ 211 (310)
T d1wdka4 161 VDNAVEWIASGKENRAEDALKVSAVDAVVTA-DKLGAAALDLIKRAISGELD 211 (310)
T ss_dssp HHHHHHHHHHCCCEEHHHHHHTTSSSEEECG-GGHHHHHHHHHHHHHTTSSC
T ss_pred hhhhhhhhccccccCHHHHhhccCccEEccH-HHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999998 89999999999999987643
|
| >d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: AUH protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.7e-47 Score=319.28 Aligned_cols=207 Identities=19% Similarity=0.335 Sum_probs=186.8
Q ss_pred eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-CcccCCCChhhHHhcCCCcchHHHHHHH
Q 026127 7 HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGFDLAWAQAAGSRTGARERLHYM 85 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 85 (243)
++||++|+||||+ +.|++|.+|+.+|.++++.++.|++++ +||++|.| ++||+|.|++.+.... ......+
T Consensus 13 ~~gI~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~~f~~g~d~~~~~~~~-----~~~~~~~ 84 (266)
T d1hzda_ 13 NRGIVVLGINRAY--GKNSLSKNLIKMLSKAVDALKSDKKVR-TIIIRSEVPGIFCAGADLKERAKMS-----SSEVGPF 84 (266)
T ss_dssp GTTEEEEEECCGG--GTTCBCTTHHHHHHHHHHHHHHCSSCS-EEEEEESBTEEEECCBCHHHHTTSC-----HHHHHHH
T ss_pred cCCEEEEEeCCCC--CCCCCCHHHHHHHHHHHHHHHhCCCcc-eEEEecccccccccccccccccccc-----chhhhhh
Confidence 4679999999997 889999999999999999999999999 99999987 6899999999887531 3455677
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhh-HHHHHHHhCCHHHHH
Q 026127 86 VESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYF-AALFRAKVGSATARR 164 (243)
Q Consensus 86 ~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~~a~ 164 (243)
...+.+++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| ...++
T Consensus 85 ~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~ig-~~~a~ 161 (266)
T d1hzda_ 85 VSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASS-AKMGLVETKLAI-IPGGGGTQRLPRAIG-MSLAK 161 (266)
T ss_dssp HHHHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETT-CEEECCGGGGTC-CCCSSHHHHHHHHHC-HHHHH
T ss_pred hhHHHHHHHHHhcCCcccccccccccccccceeccccceeeecCC-cEEeecccceee-cCCccceeeehhhhH-HHHHH
Confidence 888999999999999999999999999999999999999999998 899999999999 67776 578999999 99999
Q ss_pred HHHhcCcCCCHHHHHHcCcchhccCCHhH----HHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 026127 165 DVLLRAKKIKGEEALRMGLVEAAYDSEEQ----VAEASMRLAKQLAGRKWAGEVYAEIRKSLCPDLC 227 (243)
Q Consensus 165 ~l~l~g~~~~a~eA~~~Glv~~v~~~~~~----l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~~~~ 227 (243)
+++++|+.++|+||+++||||+|||+ ++ +.+.|.+++++++..| +.+++.+|+.++....
T Consensus 162 ~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~~~~~a~~~a~~i~~~~--p~a~~~~K~~l~~~~~ 225 (266)
T d1hzda_ 162 ELIFSARVLDGKEAKAVGLISHVLEQ-NQEGDAAYRKALDLAREFLPQG--PVAMRVAKLAINQGME 225 (266)
T ss_dssp HHHHHTCEEEHHHHHHHTSCSEEECC-CTTSCHHHHHHHHHHHTTTTSC--HHHHHHHHHHHHHHHT
T ss_pred hhhccCCccCHHHhhcccccccccCh-hhhhhHHHHHHHHHHHhcccCC--hHHHHHHHHHHHHHhc
Confidence 99999999999999999999999997 44 5667777778888888 9999999999976543
|
| >d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Naphthoate synthase MenB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=5.5e-46 Score=316.75 Aligned_cols=215 Identities=16% Similarity=0.262 Sum_probs=176.5
Q ss_pred ceeeE--eCcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecC-------CCcccCCCChhhHHhc
Q 026127 2 CTLEK--HGDVFVLTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPGSALITTSH-------GKFFSNGFDLAWAQAA 72 (243)
Q Consensus 2 ~~~~~--~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~-------g~~F~~G~Dl~~~~~~ 72 (243)
+++++ ++||++||||||+ +.|++|.+|+.+|.++++++++|+++| +|||||. |+.||+|.|+......
T Consensus 20 i~~~~~~~~gi~~ItlnRP~--~~NAl~~~m~~eL~~~l~~~~~d~~vr-~vVltg~~~~f~~gG~~f~ag~Dl~~~~~~ 96 (297)
T d1q52a_ 20 ITYHRHVDDATVRVAFNRPE--VRNAFRPHTVDELYRVLDHARMSPDVG-VVLLTGNGPSPKDGGWAFCSGGDQRIRGRS 96 (297)
T ss_dssp EEEEEESSSSEEEEEECCGG--GTTCCCHHHHHHHHHHHHHHHHCTTCC-EEEEEECCCCTTTCCCEEECCC--------
T ss_pred eEEEEEccCCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHHHhCCCcc-EEEEecCCCcccchhhhhhhcchhhhhccc
Confidence 45554 6899999999997 889999999999999999999999999 9999997 4567777888755432
Q ss_pred CCC------cchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCC
Q 026127 73 GSR------TGARERLHYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLP 146 (243)
Q Consensus 73 ~~~------~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p 146 (243)
... ....+........+.+++..|.++||||||+|||+|+|||++|+++||+||+++++++|++||+++|+ +|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~Gl-~p 175 (297)
T d1q52a_ 97 GYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGS-FD 175 (297)
T ss_dssp ---------------------CHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGTC-CC
T ss_pred ccccccccccchhhhHHHHHHHHHHHHHHHHhcCCeEEEEEcceeeeccchhhhhhhccccccccccceeeeecccc-cc
Confidence 110 00112233444557789999999999999999999999999999999999998875689999999999 67
Q ss_pred hh-hHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 026127 147 DY-FAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGRKWAGEVYAEIRKSLCP 224 (243)
Q Consensus 147 ~~-g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~~~~~~a~~~~k~~l~~ 224 (243)
++ +..+|++++| .+.+++++++|+.++|+||+++||||+|+++ +++.+++.++++++++.| +.+++.+|+.++.
T Consensus 176 ~~~~~~~L~r~iG-~~~a~~llltg~~~~a~eA~~~Glv~~vv~~-~el~~~~~~~a~~l~~~~--~~a~~~~K~~~~~ 250 (297)
T d1q52a_ 176 GGYGSAYLARQVG-QKFAREIFFLGRTYTAEQMHQMGAVNAVAEH-AELETVGLQWAAEINAKS--PQAQRMLKFAFNL 250 (297)
T ss_dssp CSTTTHHHHHHHC-HHHHHHHHHHCCEECHHHHHHHTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHH
T ss_pred ccccccccccccC-ccceeeccccccccchHhhhhhccccccCch-HHhhHHHHHHhhhhccCC--HHHHHHHHHHHHH
Confidence 55 4689999999 9999999999999999999999999999998 899999999999999998 8999999987754
|
| >d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Escherichia coli [TaxId: 562]
Probab=98.67 E-value=1e-07 Score=73.35 Aligned_cols=143 Identities=17% Similarity=0.120 Sum_probs=95.5
Q ss_pred EEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCC-eEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHH
Q 026127 13 LTLTGSSDVDEHRFGPPAIDSILSAIAKAKAEATPG-SALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRP 91 (243)
Q Consensus 13 i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~d~~v~-~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (243)
|.|+.| ++.++..++...+..++.++..+ ..|.+. |.|+|+... ..
T Consensus 19 I~l~g~-------I~~~~~~~~i~~l~~l~~~~~~~~I~l~In------S~GG~v~~g--------------------~~ 65 (183)
T d1yg6a1 19 IFLTGQ-------VEDHMANLIVAQMLFLEAENPEKDIYLYIN------SPGGVITAG--------------------MS 65 (183)
T ss_dssp EEEESS-------BCHHHHHHHHHHHHHHHHHCSSSCEEEEEE------ECCBCHHHH--------------------HH
T ss_pred EEECCE-------ECHHHHHHHHHHHHHhhhhccCCceEEEEe------CCCccHHHH--------------------HH
Confidence 456655 88899999988888877543322 134443 345655432 34
Q ss_pred HHHHHhcCCCcEEEEEccccchHHHHHHHhcc--eeEEecCCceeeccccccCcCCChhh-HH---------------HH
Q 026127 92 VVAAMMDLPMPTVAAVNGHAAAAGLTLALSHD--YVIMRRDKGVLYMSEVDIGLTLPDYF-AA---------------LF 153 (243)
Q Consensus 92 ~~~~l~~~~kp~Iaav~G~~~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~---------------~l 153 (243)
++..|..++.|+...+.|.|.+.|..+++++| .|++.++ +.|-+.+...|. ..... .. .+
T Consensus 66 i~d~i~~~~~~v~tv~~G~aaS~a~~I~~ag~~~~R~~~~n-s~~miH~~~~~~-~G~~~~i~~~~~~~~~~~~~~~~~~ 143 (183)
T d1yg6a1 66 IYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPN-SRVMIHQPLGGY-QGQATDIEIHAREILKVKGRMNELM 143 (183)
T ss_dssp HHHHHHHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTT-CEEEECCCEEEE-EEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEEEEEeHHHHHHHHHcCCCCceeeCCC-ceEEeccccccc-ccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778889999999999999999999999998 7999998 777776666554 11111 10 11
Q ss_pred HHHhCC-HHHHHHHHhcCcCCCHHHHHHcCcchhccCC
Q 026127 154 RAKVGS-ATARRDVLLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 154 ~~~~g~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
.++.|. ....++++-.-.-++|+||+++||||+|+.+
T Consensus 144 ~~~tg~~~e~i~~~~~~d~~lta~EAl~~GliD~Ii~~ 181 (183)
T d1yg6a1 144 ALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTH 181 (183)
T ss_dssp HHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSSSEECCC
T ss_pred HHHHCcCHHHHHHHhccCccccHHHHHHcCCCcEEecc
Confidence 122231 2223333333344799999999999999975
|
| >d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.60 E-value=4.4e-07 Score=69.47 Aligned_cols=137 Identities=17% Similarity=0.086 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCC-eEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPG-SALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~-~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
+|.++..++...+..++.+...+ .-+.+. |.|+|+... ..++..|..++.||.
T Consensus 22 I~~~~~~~~i~~l~~l~~~~~~~~I~l~In------S~GG~v~~g--------------------l~i~d~i~~~~~~v~ 75 (179)
T d2cbya1 22 VNDEIANRLCAQILLLAAEDASKDISLYIN------SPGGSISAG--------------------MAIYDTMVLAPCDIA 75 (179)
T ss_dssp BCHHHHHHHHHHHHHHHHHCSSSCEEEEEE------ECCBCHHHH--------------------HHHHHHHHHCSSCEE
T ss_pred ECHHHHHHHHHHHHHHhccCCCCeEEEEee------CCCCCHHHH--------------------HHHHHHHHhhcccee
Confidence 88899999988776665432212 134554 456655532 235667778899999
Q ss_pred EEEccccchHHHHHHHhcc--eeEEecCCceeeccccccCcCCChhh-HH----H-----------HHHHhCC-HHHHHH
Q 026127 105 AAVNGHAAAAGLTLALSHD--YVIMRRDKGVLYMSEVDIGLTLPDYF-AA----L-----------FRAKVGS-ATARRD 165 (243)
Q Consensus 105 aav~G~~~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~----~-----------l~~~~g~-~~~a~~ 165 (243)
..+.|.|.+.|..+++++| .|++.++ ++|-+.+...|. ..... .. . +.++.|. ....++
T Consensus 76 t~~~G~aaS~a~~il~ag~k~~R~~~~~-s~~miH~~~~~~-~G~~~~i~~~~~~l~~~~~~i~~i~a~~tg~~~~~i~~ 153 (179)
T d2cbya1 76 TYAMGMAASMGEFLLAAGTKGKRYALPH-ARILMHQPLGGV-TGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEA 153 (179)
T ss_dssp EEEEEEEETHHHHHHHTSCTTCEEECTT-CEEECCCC-----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred eehhhhhhhHHHHHHHcCCCCceEECCc-hHhhcCCCchhc-CCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999 7999998 778776665444 11110 00 0 1122231 222234
Q ss_pred HHhcCcCCCHHHHHHcCcchhccCC
Q 026127 166 VLLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 166 l~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
.+-...-++|+||+++||||+|+.+
T Consensus 154 ~~~~d~~l~a~EA~~~GliDeIi~~ 178 (179)
T d2cbya1 154 DSDRDRWFTAAEALEYGFVDHIITR 178 (179)
T ss_dssp HHHTTCEEEHHHHHHHTSCSEECSC
T ss_pred hhcCCceecHHHHHHcCCCcEEecC
Confidence 4445555999999999999999864
|
| >d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Plasmodium falciparum [TaxId: 5833]
Probab=98.52 E-value=3.1e-06 Score=65.19 Aligned_cols=137 Identities=8% Similarity=-0.004 Sum_probs=91.1
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTVA 105 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 105 (243)
+|.++..++...+..++....-..-+.+ -|.|+|+... ..++..|..++.|+..
T Consensus 27 Id~~~~~~~i~~l~~l~~~~~~~I~l~I------NS~GG~v~~g--------------------~ai~d~i~~~~~~v~t 80 (190)
T d2f6ia1 27 INKKTADELISQLLYLDNINHNDIKIYI------NSPGGSINEG--------------------LAILDIFNYIKSDIQT 80 (190)
T ss_dssp BCHHHHHHHHHHHHHHHHHCCSCEEEEE------EECCBCHHHH--------------------HHHHHHHHHSSSCEEE
T ss_pred eCHHHHHHHHHHHHHHhccCCCCeEEEE------eCchhhhhHH--------------------HHHHHHHHhhCCceEE
Confidence 8889999999988887653221113555 4556655532 3366677788999999
Q ss_pred EEccccchHHHHHHHhcc--eeEEecCCceeeccccccCcCCChhh-H----H-----------HHHHHhCC-HHHHHHH
Q 026127 106 AVNGHAAAAGLTLALSHD--YVIMRRDKGVLYMSEVDIGLTLPDYF-A----A-----------LFRAKVGS-ATARRDV 166 (243)
Q Consensus 106 av~G~~~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl~~p~~g-~----~-----------~l~~~~g~-~~~a~~l 166 (243)
.+.|.|.+.|..+++++| .|++.++ ++|-+.....|. .-... . . .+.++.|. .....+.
T Consensus 81 v~~G~aaS~a~~i~~aG~kg~R~~~pn-s~imiH~~s~~~-~G~~~di~~~~~~l~~~~~~~~~i~a~~tg~~~~~i~~~ 158 (190)
T d2f6ia1 81 ISFGLVASMASVILASGKKGKRKSLPN-CRIMIHQPLGNA-FGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKD 158 (190)
T ss_dssp EEEEEECHHHHHHHHTSCTTCEEECTT-CEEESSCTTCSC-C--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred EEeccccchhHHHHHhCCCCccccCCC-cEEEEccccccc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHh
Confidence 999999999999999988 6999998 778777776665 21110 0 0 12223331 1122233
Q ss_pred HhcCcCCCHHHHHHcCcchhccCC
Q 026127 167 LLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 167 ~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
+-.-.-++|+||+++||||+|+.+
T Consensus 159 ~~~d~~l~a~EAl~~GliD~Ii~~ 182 (190)
T d2f6ia1 159 SDRDYYMNALEAKQYGIIDEVIET 182 (190)
T ss_dssp HHTTCEECHHHHHHHTSCSEECCC
T ss_pred ccCCeeecHHHHHHcCCCcEEccc
Confidence 333344899999999999999965
|
| >d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.45 E-value=3.3e-06 Score=65.15 Aligned_cols=137 Identities=15% Similarity=0.124 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCC-eEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 26 FGPPAIDSILSAIAKAKAEATPG-SALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~-~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
++.++...+...+..++.+..-+ .-+.+.+ .|+|+... ..++..|..++.||.
T Consensus 33 I~~~~~~~~~~~l~~l~~~~~~~~I~l~InS------~GG~v~~g--------------------lai~d~i~~~~~~v~ 86 (192)
T d1y7oa1 33 VEDNMANSVIAQLLFLDAQDSTKDIYLYVNT------PGGSVSAG--------------------LAIVDTMNFIKADVQ 86 (192)
T ss_dssp BCHHHHHHHHHHHHHHHHHCTTSCEEEEEEE------CCBCHHHH--------------------HHHHHHHHHSSSCEE
T ss_pred EchHHHHHHHHHHHHhhhhcccCceeeeecC------CCCCHHHH--------------------HHHHHHHHhcCcceE
Confidence 78888888888887766432212 1455544 45544432 346677788999999
Q ss_pred EEEccccchHHHHHHHh--cceeEEecCCceeeccccccCcCCChhh-H------HH-----------HHHHhCC-HHHH
Q 026127 105 AAVNGHAAAAGLTLALS--HDYVIMRRDKGVLYMSEVDIGLTLPDYF-A------AL-----------FRAKVGS-ATAR 163 (243)
Q Consensus 105 aav~G~~~G~G~~la~~--~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~------~~-----------l~~~~g~-~~~a 163 (243)
..+.|.|.+.|..++++ +|.|++.++ +++-+.+...|. ..... . .. +.++.|. ....
T Consensus 87 t~~~G~aaS~as~il~aG~~g~R~~~pn-s~~miHq~~~~~-~G~~~~~~~~~~~~el~~~~~~i~~i~~~~tg~~~~~i 164 (192)
T d1y7oa1 87 TIVMGMAASMGTVIASSGAKGKRFMLPN-AEYMIHQPMGGT-GGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKV 164 (192)
T ss_dssp EEEEEEEETHHHHHHTTSCTTCEEECTT-CEEECCCCC---------------CHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred EEeccccCCccceeeeecCCCccccchH-HHHHhhcccccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999888776 679999999 778777666555 21110 0 00 1122221 2223
Q ss_pred HHHHhcCcCCCHHHHHHcCcchhccCC
Q 026127 164 RDVLLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 164 ~~l~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
.+.+-...=++|+||+++||||+|+.+
T Consensus 165 ~~~~~rd~~lsa~EAleyGliD~Ii~~ 191 (192)
T d1y7oa1 165 HADAERDNWMSAQETLEYGFIDEIMAN 191 (192)
T ss_dssp HHHHHSCCCBCHHHHHHHTSCSEECCC
T ss_pred HHhhcCCceecHHHHHHcCCCcEEecC
Confidence 344444556999999999999999865
|
| >d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=98.36 E-value=4.5e-06 Score=64.42 Aligned_cols=135 Identities=12% Similarity=0.091 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHHHHHHHhc-C--CCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026127 26 FGPPAIDSILSAIAKAKAE-A--TPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMP 102 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~d-~--~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 102 (243)
++.++...+...+..++.. + .+ .+.+.+. |+++.. ...++..|..++.|
T Consensus 35 I~~~~~~~~i~~l~~l~~~~~~~~I--~l~InS~------GG~v~~--------------------g~~i~d~i~~~~~~ 86 (193)
T d1tg6a1 35 IDDSVASLVIAQLLFLQSESNKKPI--HMYINSP------GGVVTA--------------------GLAIYDTMQYILNP 86 (193)
T ss_dssp BCHHHHHHHHHHHHHHHHHCSSSCE--EEEEEEC------CBCHHH--------------------HHHHHHHHHHSCSC
T ss_pred EchHHHHHHHHHHHHhcccCCCcEE--EEEeecC------cccHHH--------------------HHHHHHHHHhhcCc
Confidence 7888888888777766643 2 33 4555444 444332 13467778889999
Q ss_pred EEEEEccccchHHHHHHHhcc--eeEEecCCceeeccccccCcCCChhh-HHH---------------HHHHhCC-HHHH
Q 026127 103 TVAAVNGHAAAAGLTLALSHD--YVIMRRDKGVLYMSEVDIGLTLPDYF-AAL---------------FRAKVGS-ATAR 163 (243)
Q Consensus 103 ~Iaav~G~~~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~---------------l~~~~g~-~~~a 163 (243)
|...+.|.|.+.|..+.+++| .|++.++ ++|-+.+...|. .-... ... +..+.|. ....
T Consensus 87 V~tv~~G~aaS~a~~il~aG~~g~R~~~pn-s~~miHq~~~~~-~G~~~di~~~~~el~~~~~~i~~i~a~~Tg~~~~~i 164 (193)
T d1tg6a1 87 ICTWCVGQAASMGSLLLAAGTPGMRHSLPN-SRIMIHQPSGGA-RGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVI 164 (193)
T ss_dssp EEEEEEEEEETHHHHHHHTSCTTCEEECTT-CEEEECCCCCCC-CSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred eEEEEccchHHHHHHHhhcCccCccccCcc-cHHHhcCCccCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 999999999999999999999 5999999 788877776665 22111 100 1122221 2222
Q ss_pred HHHHhcCcCCCHHHHHHcCcchhccCC
Q 026127 164 RDVLLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 164 ~~l~l~g~~~~a~eA~~~Glv~~v~~~ 190 (243)
++++-.-.-++|+||+++||||+|+.+
T Consensus 165 ~~~~~rD~~lta~EAl~yGliD~Ii~~ 191 (193)
T d1tg6a1 165 ESAMERDRYMSPMEAQEFGILDKVLVH 191 (193)
T ss_dssp HHHHSSCEEECHHHHHHHTSCSEECSS
T ss_pred HHHhccCccCCHHHHHHcCCCCEEccC
Confidence 333333334999999999999999864
|
| >d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=98.18 E-value=9.4e-05 Score=59.33 Aligned_cols=143 Identities=18% Similarity=0.174 Sum_probs=90.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCC
Q 026127 22 DEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPM 101 (243)
Q Consensus 22 ~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 101 (243)
..-+++....+.+..+.+.+.++.-+ +|.+...| |..+.+-. .........+. .... ..-..
T Consensus 100 ~gGS~g~~~~~K~~r~~e~A~~~~lP--lI~l~dsg-----Garm~e~~---------~~~~~~~~~~~-~~~~-~s~~v 161 (258)
T d1xnya1 100 FGGALGEVYGQKIVKVMDFALKTGCP--VVGINDSG-----GARIQEGV---------ASLGAYGEIFR-RNTH-ASGVI 161 (258)
T ss_dssp GGGCBCHHHHHHHHHHHHHHHHHTCC--EEEEECCC-----SBCGGGTH---------HHHHHHHHHHH-HHHH-TTTTS
T ss_pred hcCccchhhHHHHHHHHHHHHHcCCc--eEEEecCC-----CcccCccc---------ccccchhHHHH-HHHH-HcCCC
Confidence 34688999999999999999887665 44444433 33333211 11112222222 2222 23469
Q ss_pred cEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHH---
Q 026127 102 PTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEA--- 178 (243)
Q Consensus 102 p~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA--- 178 (243)
|+|+++.|+|.||+.....+||++|..++.+++ |+.-|. ..+ ..+|+.++.+|+
T Consensus 162 P~I~vv~G~~~gG~a~~~~~~~~vim~~~~a~i-------~~aGP~--------------vv~--~~~ge~i~~eelgga 218 (258)
T d1xnya1 162 PQISLVVGPCAGGAVYSPAITDFTVMVDQTSHM-------FITGPD--------------VIK--TVTGEDVGFEELGGA 218 (258)
T ss_dssp CEEEEECSEEEGGGGHHHHHSSEEEEETTTCEE-------ESSCHH--------------HHH--HHHCCCCCHHHHHBH
T ss_pred CEEEEEcCCcChhHHHHHHhccchhhcccceEE-------EecCHH--------------HHH--HHhcCccChHHhccH
Confidence 999999999999999999999999988764544 332222 111 235777777774
Q ss_pred ----HHcCcchhccCCHhHHHHHHHHHHHHH
Q 026127 179 ----LRMGLVEAAYDSEEQVAEASMRLAKQL 205 (243)
Q Consensus 179 ----~~~Glv~~v~~~~~~l~~~a~~~a~~l 205 (243)
..-|++|.++++.++..+.++++..-+
T Consensus 219 ~~h~~~sG~~d~v~~de~ea~~~~r~~Ls~l 249 (258)
T d1xnya1 219 RTHNSTSGVAHHMAGDEKDAVEYVKQLLSYL 249 (258)
T ss_dssp HHHHHTSSCCSEEESSHHHHHHHHHHHHHHS
T ss_pred HHHHhcCCeeEEEeCCHHHHHHHHHHHHHhc
Confidence 457999999998555555555554444
|
| >d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.17 E-value=8.4e-05 Score=59.60 Aligned_cols=141 Identities=18% Similarity=0.176 Sum_probs=89.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026127 23 EHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMP 102 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 102 (243)
.-+++....+.+..+.+.+.++.-+- +.++.+.| ..+.+-. .....+...+.. . ....--.|
T Consensus 102 gGS~g~~~g~K~~ra~e~A~~~~lP~-I~l~dsgG------ar~~eg~---------~~~~~~~~~~~~-~-~~~~~~vP 163 (258)
T d2a7sa1 102 GGSLGEVYGEKIVKVQELAIKTGRPL-IGINDGAG------ARIQEGV---------VSLGLYSRIFRN-N-ILASGVIP 163 (258)
T ss_dssp GGCBCHHHHHHHHHHHHHHHHHTCCE-EEEECCCS------BCGGGCT---------HHHHHHHHHHHH-H-HHHTTTSC
T ss_pred CCccchhhhhHHHHHHHHHHhcCCce-EEEeccCC------ccccccc---------ccccchhhHHHH-H-HHHcCCCC
Confidence 45889999999999999999887663 55554443 3332211 001111222222 2 23345799
Q ss_pred EEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHH----
Q 026127 103 TVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEA---- 178 (243)
Q Consensus 103 ~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA---- 178 (243)
+|+++.|+|.||+......||++|+.++.+.+ ++.-|. ..+ ..+|+.++.+|.
T Consensus 164 ~I~~v~G~~~gG~a~~~~~~d~~vm~~~~a~i-------~~aGP~--------------vV~--~~~ge~~~~eeLGga~ 220 (258)
T d2a7sa1 164 QISLIMGAAAGGHVYSPALTDFVIMVDQTSQM-------FITGPD--------------VIK--TVTGEEVTMEELGGAH 220 (258)
T ss_dssp EEEEECSCCBSGGGHHHHHSSEEEEEBTTBBC-------BSSCHH--------------HHH--HHHCCCCCHHHHHBHH
T ss_pred EEEEEecCcccHHHHHHHhccceEeecCceEE-------EccChh--------------HHH--HhcCCccChhhccCHh
Confidence 99999999999999999999999988774433 332222 222 225777776653
Q ss_pred ---HHcCcchhccCCHhHHHHHHHHHHHH
Q 026127 179 ---LRMGLVEAAYDSEEQVAEASMRLAKQ 204 (243)
Q Consensus 179 ---~~~Glv~~v~~~~~~l~~~a~~~a~~ 204 (243)
.+.|++|.++++.++..+.++++...
T Consensus 221 ~h~~~sG~~D~v~~de~~a~~~~r~~Ls~ 249 (258)
T d2a7sa1 221 THMAKSGTAHYAASGEQDAFDYVRELLSY 249 (258)
T ss_dssp HHHHTSCCCSEEESSHHHHHHHHHHHHHH
T ss_pred HhhhhccccceEeCCHHHHHHHHHHHHHh
Confidence 46799999999855555555544443
|
| >d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=98.09 E-value=0.00011 Score=58.85 Aligned_cols=140 Identities=16% Similarity=0.234 Sum_probs=89.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026127 23 EHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMP 102 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 102 (243)
.-+++....+.+..+.+.+.++.-+- +.++.+. |..+.+- ......+...+..+ ..+.. ..|
T Consensus 102 GGS~g~~~~~K~~~a~e~A~~~~lPl-V~l~~sg------G~r~~eg---------~~~l~~~~~~~~~~-~~ls~-~vP 163 (253)
T d1on3a1 102 GGSAGETQSTKVVETMEQALLTGTPF-LFFYDSG------GARIQEG---------IDSLSGYGKMFFAN-VKLSG-VVP 163 (253)
T ss_dssp GGCBCHHHHHHHHHHHHHHHHHTCCE-EEEEEEC------SBCGGGT---------HHHHHHHHHHHHHH-HHHTT-TSC
T ss_pred cccceecccchhhhhHHHHhhcCCCe-EEEEecC------CCccccc---------ceeccccceehHHH-HHHhc-cce
Confidence 46889999999999999998877663 4554443 3334321 11122233333333 33333 599
Q ss_pred EEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHH-----
Q 026127 103 TVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEE----- 177 (243)
Q Consensus 103 ~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~e----- 177 (243)
+|+++.|+|.||+.....+||++|+.++ +.+. +.-|.. .+ ..+|+.++.+|
T Consensus 164 ~i~vv~Gp~~GG~a~~~~~~d~vi~~~~-a~i~-------~aGP~v--------------Ve--~~~ge~~~~eelGga~ 219 (253)
T d1on3a1 164 QIAIIAGPCAGGASYSPALTDFIIMTKK-AHMF-------ITGPQV--------------IK--SVTGEDVTADELGGAE 219 (253)
T ss_dssp EEEEEEEEEESGGGHHHHHSSEEEEETT-CEEE-------SSCHHH--------------HH--HHHCCCCCHHHHHSHH
T ss_pred EEEEEecCcccceeeccchhhheecccc-ceEE-------ecCcch--------------hh--hhhCCcCChHhccCHH
Confidence 9999999999999999999999999876 5443 312322 11 11356666543
Q ss_pred --HHHcCcchhccCCHhHHHHHHHHHHHHHhcC
Q 026127 178 --ALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208 (243)
Q Consensus 178 --A~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~ 208 (243)
+.+-|.+|.|+++ | +.+.++++++.+.
T Consensus 220 ~h~~~sG~iD~v~~~-e---~~a~~~~r~lls~ 248 (253)
T d1on3a1 220 AHMAISGNIHFVAED-D---DAAELIAKKLLSF 248 (253)
T ss_dssp HHHHTTCCCSEEESS-H---HHHHHHHHHHHHT
T ss_pred HhhhccccceEEECC-H---HHHHHHHHHHHHh
Confidence 3467999999998 4 3366666655543
|
| >d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA species: Escherichia coli [TaxId: 562]
Probab=98.07 E-value=4.4e-05 Score=62.88 Aligned_cols=137 Identities=16% Similarity=0.117 Sum_probs=96.4
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 25 RFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 25 ~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
.++++-.+.-.+.++.+++-.-+ +|-+--. +.|-.|.+-++ ....+.+.+++.++.++++|+|
T Consensus 131 ~~~p~~~rKa~r~~~~a~~~~~P--ii~~vDt-pG~~~g~~~E~--------------~g~~~~~a~~~~~~~~~~vP~i 193 (316)
T d2f9ya1 131 MPAPEGYRKALRLMQMAERFKMP--IITFIDT-PGAYPGVGAEE--------------RGQSEAIARNLREMSRLGVPVV 193 (316)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCC--EEEEEEE-SCSCCSHHHHH--------------TTHHHHHHHHHHHHHTCSSCEE
T ss_pred cccHHHHHHHHHHHHHHHHcCcc--eEEEEec-CcccCCccccc--------------ccHHHHHHHHHHHHHhCCCceE
Confidence 57888888888888888876544 3333222 22333443322 2345567788999999999999
Q ss_pred EEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCcc
Q 026127 105 AAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALRMGLV 184 (243)
Q Consensus 105 aav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv 184 (243)
+.|-|.+.|||......+|.+++.++ ++++. + .|.+.+..+-+--.....+. ....+++++++++|+|
T Consensus 194 ~vv~g~g~~gga~a~~~~d~v~m~~~-a~~sv------i-spEg~AsILwkd~~~a~eaA----ealklta~dL~~lgiI 261 (316)
T d2f9ya1 194 CTVIGEGGSGGALAIGVGDKVNMLQY-STYSV------I-SPEGCASILWKSADKAPLAA----EAMGIIRPRLKELKLI 261 (316)
T ss_dssp EEEEEEEEHHHHHTTCCCSEEEECTT-CEEES------S-CHHHHHHHHSSCSTTHHHHH----HHHTCSHHHHHTTTSC
T ss_pred EEEEhhhhchhhhhhhhhhHHHHHhh-hHHhh------c-cchhhhhHhhccchhhcchH----HHHhhhhHHHHHcCch
Confidence 99999999999988889999999998 88872 2 46665555433222122222 2345899999999999
Q ss_pred hhccCC
Q 026127 185 EAAYDS 190 (243)
Q Consensus 185 ~~v~~~ 190 (243)
|+|++.
T Consensus 262 DeII~E 267 (316)
T d2f9ya1 262 DSIIPE 267 (316)
T ss_dssp SCCCCC
T ss_pred hhcccC
Confidence 999964
|
| >d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=98.01 E-value=0.00021 Score=56.94 Aligned_cols=141 Identities=18% Similarity=0.215 Sum_probs=90.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026127 23 EHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMP 102 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 102 (243)
.-+++....+.+..+.+.+.+..-+- +.++.+ .|..+.+-. .......+.+.. . ....-..|
T Consensus 99 gGs~g~~~~~K~~r~~e~A~~~~~P~-I~~~ds------gG~r~~e~~---------~~l~~~~~~~~~-~-~~~s~~iP 160 (251)
T d1vrga1 99 GGSLGEMHAKKIVKLLDLALKMGIPV-IGINDS------GGARIQEGV---------DALAGYGEIFLR-N-TLASGVVP 160 (251)
T ss_dssp GGCBCHHHHHHHHHHHHHHHHHTCCE-EEEEEE------CSBCGGGTH---------HHHHHHHHHHHH-H-HHHTTTSC
T ss_pred hcccchHHHHHHHHHHHHHHHcCCCE-EEEEcC------CCccccccc---------cccccchHHHHH-H-HHHCCCCC
Confidence 45888999999999999888776653 444443 344443311 111122222222 2 22345799
Q ss_pred EEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHH----
Q 026127 103 TVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEA---- 178 (243)
Q Consensus 103 ~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA---- 178 (243)
+|+++.|+|.||+......||++|+.++.+.+ ++..| ...+ ..+|+.++.++.
T Consensus 161 ~I~vv~G~~~gG~a~~~~~~d~~im~~~~a~i-------~~aGp--------------~vv~--~~~ge~~~~eelGga~ 217 (251)
T d1vrga1 161 QITVIAGPCAGGAVYSPALTDFIVMVDQTARM-------FITGP--------------NVIK--AVTGEEISQEDLGGAM 217 (251)
T ss_dssp EEEEEEEEEBGGGGHHHHHSSEEEEETTTCBC-------BSSCH--------------HHHH--HHHCCCCCHHHHHBHH
T ss_pred EEEEEccCccccceehhhhCceEEEEccceeE-------EecCc--------------hhhh--hhcCCcCChHHccchh
Confidence 99999999999999999999999998774432 33212 2211 235788887775
Q ss_pred ---HHcCcchhccCCHhHHHHHHHHHHHHHhcC
Q 026127 179 ---LRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208 (243)
Q Consensus 179 ---~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~ 208 (243)
.+-|.+|.++++. +.+.+.++++.+.
T Consensus 218 ~h~~~sG~~D~v~~de----~~a~~~ir~lLs~ 246 (251)
T d1vrga1 218 VHNQKSGNAHFLADND----EKAMSLVRTLLSY 246 (251)
T ss_dssp HHHHTSCCCSEEESSH----HHHHHHHHHHHTT
T ss_pred hhhhccccceEEECCH----HHHHHHHHHHHHh
Confidence 4679999999984 3455555555543
|
| >d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD species: Escherichia coli [TaxId: 562]
Probab=97.67 E-value=0.00056 Score=54.78 Aligned_cols=151 Identities=14% Similarity=0.163 Sum_probs=88.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCC
Q 026127 22 DEHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPM 101 (243)
Q Consensus 22 ~~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 101 (243)
..-+++....+.+..+.+.+.+..-+- +.+..+ .|..+.+-.. .... ..........+.....
T Consensus 108 ~gGS~g~~~~~Ki~~a~e~A~~~~lPl-I~~~~s------gG~r~~e~~~---------sl~~-~~~~~~~~~~~~~~~v 170 (263)
T d2f9yb1 108 MGGSMGSVVGARFVRAVEQALEDNCPL-ICFSAS------GGARMQEALM---------SLMQ-MAKTSAALAKMQERGL 170 (263)
T ss_dssp TTTCBCTHHHHHHHHHHHHHHHHTCCE-EEEEEE------SSBCGGGTHH---------HHHH-HHHHHHHHHHHHHTTC
T ss_pred hccccccchhhHHhHHHHHHHHcCCCe-EEEecC------CCcccccccc---------hhhc-chhHHHHHHHHHhCCC
Confidence 346889999999999999998876653 444433 3344433111 1111 1122333444556778
Q ss_pred cEEEEEccccchHHH-HHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHH
Q 026127 102 PTVAAVNGHAAAAGL-TLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKIKGEEALR 180 (243)
Q Consensus 102 p~Iaav~G~~~G~G~-~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~ 180 (243)
|+|+++.|+|.||+. .+++++|++++.+. +++ |+.-|.. .....| + -+.-+.-+++-..+
T Consensus 171 P~I~v~~g~~~GG~aa~~~~~~d~i~~~~~-s~i-------~~aGP~v----ve~~~g------e-~~~e~~g~a~~~~~ 231 (263)
T d2f9yb1 171 PYISVLTDPTMGGVSASFAMLGDLNIAEPK-ALI-------GFAGPRV----IEQTVR------E-KLPPGFQRSEFLIE 231 (263)
T ss_dssp CEEEEEEEEEEHHHHTTGGGCCSEEEECTT-CBE-------ESSCHHH----HHHHHT------S-CCCTTTTBHHHHGG
T ss_pred ceEEEecCCcchHHHhhhhhcCceEeeecc-eee-------eccCHHH----HhhhcC------C-cCChhhccHHHHHh
Confidence 999999999999986 46777777777654 544 3322322 111222 0 01212224555567
Q ss_pred cCcchhccCCHhHHHHHHHHHHHHHhcCC
Q 026127 181 MGLVEAAYDSEEQVAEASMRLAKQLAGRK 209 (243)
Q Consensus 181 ~Glv~~v~~~~~~l~~~a~~~a~~l~~~~ 209 (243)
.|+||.|+++ ++.-++..++.+.|...|
T Consensus 232 ~G~iD~vv~~-ee~~~~l~~~l~~L~~~p 259 (263)
T d2f9yb1 232 KGAIDMIVRR-PEMRLKLASILAKLMNLP 259 (263)
T ss_dssp GTCCSEECCH-HHHHHHHHHHHHHHTTCC
T ss_pred CCCCCEEECC-HHHHHHHHHHHHHHhhCC
Confidence 8999999986 655555555555555443
|
| >d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=97.56 E-value=0.00017 Score=58.65 Aligned_cols=162 Identities=17% Similarity=0.223 Sum_probs=87.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026127 23 EHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMP 102 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 102 (243)
.-+++....+.+.++++.+.+..-+ +|.+.- |.|..+.+-..... . .. .....+. -...+....+|
T Consensus 117 gGs~~~~~~~K~~r~~~lA~~~~lP--~I~l~d-----s~Ga~~~~~~e~~~-~--~~---~~g~~~~-~~a~ls~~~VP 182 (287)
T d1pixa2 117 AGAWVPGQAECLLRASDTAKTLHVP--LVYVLN-----CSGVKFDEQEKVYP-N--RR---GGGTPFF-RNAELNQLGIP 182 (287)
T ss_dssp TTEECTTHHHHHHHHHHHHHHHTCC--EEEEEC-----CCEECGGGHHHHSS-S--TT---STTHHHH-HHHHHHHTTCC
T ss_pred cccchhhHHHHHHHHHHhhhhcCCC--EEEEec-----CCcccCCcchhhcc-c--hh---hHHHHHH-HHHHHhhcCCC
Confidence 3478888999999999888887665 344433 33344432111000 0 00 0111122 12345667899
Q ss_pred EEEEEccccchHHHHHHHhcceeEEecCCceeec--cccccCcCCChhhH-HHHHHHhCCHHHHHHHHhcCcCCCHHHH-
Q 026127 103 TVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYM--SEVDIGLTLPDYFA-ALFRAKVGSATARRDVLLRAKKIKGEEA- 178 (243)
Q Consensus 103 ~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~--pe~~~Gl~~p~~g~-~~l~~~~g~~~~a~~l~l~g~~~~a~eA- 178 (243)
+|++|-|+|.|||...+++||++++.++ +.+.+ |.+--+. .+..+. ......+. ..... -.+-+.+.+.+.
T Consensus 183 ~Isvv~G~~~gGgAy~~~~~~~i~~~~~-a~i~~~Gp~vv~~~-~~~~~~~~~~~~ei~-~~~ge--~~~~eeLGGa~~H 257 (287)
T d1pixa2 183 VIVGIYGTNPAGGGYHSISPTVIIAHEK-ANMAVGGAGIMGGM-NPKGHVDLEYANEIA-DMVDR--TGKTEPPGAVDIH 257 (287)
T ss_dssp EEEEECSEEETHHHHHHHSSSEEEEETT-CEEESCCCTTCCSC-CSSSSCCHHHHHHHH-HHHHT--TCCCCCSSBHHHH
T ss_pred eEEEecCCccccceeccccceeEEecCC-eEEEEECHHHhccc-chhhhhhhhhHHHHH-hhhcc--cccccccccHHHh
Confidence 9999999999999888888888888776 54443 2222222 222221 11111121 11101 123344554443
Q ss_pred -HHcCcchhccCCHhHHHHHHHHHHHHHhc
Q 026127 179 -LRMGLVEAAYDSEEQVAEASMRLAKQLAG 207 (243)
Q Consensus 179 -~~~Glv~~v~~~~~~l~~~a~~~a~~l~~ 207 (243)
...|.+|.++++.+ ++.+.++++.+
T Consensus 258 ~~~sG~~d~v~~~e~----~ai~~~r~~ls 283 (287)
T d1pixa2 258 YTETGFMREVYASEE----GVLEGIKKYVG 283 (287)
T ss_dssp TTTSCCSCEEESSHH----HHHHHHHHHHH
T ss_pred hhhcccceeecCCHH----HHHHHHHHHHh
Confidence 45799999999843 44555555544
|
| >d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=97.56 E-value=0.0024 Score=50.95 Aligned_cols=170 Identities=12% Similarity=0.089 Sum_probs=104.3
Q ss_pred eCcEEEEEEcCCCCCCC--CCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHH
Q 026127 7 HGDVFVLTLTGSSDVDE--HRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHY 84 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~--N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 84 (243)
+|...-+.-|+| .. -+++.+..+...+.++-++...-+ +|.+.-. ..|..|.+.++ ..
T Consensus 65 ~G~~vgvian~~---~~~~G~~~~~~a~Kaa~fi~lc~~~~iP--li~l~Dt-pGf~~G~~~E~--------------~g 124 (264)
T d1vrga2 65 QGKTVGIVANQP---SVLAGVLDIDSSDKAARFIRFLDAFNIP--ILTFVDT-PGYLPGVAQEH--------------GG 124 (264)
T ss_dssp TTEEEEEEEECT---TSGGGCBCHHHHHHHHHHHHHHHHTTCC--EEEEEEE-CCBCCCHHHHH--------------TT
T ss_pred cCceEEEEeccc---cccccchhhhhHHHHHHHHHHHHHhCCc--eEEEeec-ccccccHHHHH--------------Hh
Confidence 343344445666 44 479999999999999998876443 4544443 45666654332 23
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHH----hcceeEEecCCceeeccccccCcCCChhhHHHHHHH-h--
Q 026127 85 MVESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLAL----SHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAK-V-- 157 (243)
Q Consensus 85 ~~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~----~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~-~-- 157 (243)
..+...+++.++.++.+|.|+.|=|.+.|+|..-+. .+|++++.++ +.++ ...|..+...+.++ +
T Consensus 125 ~~~~ga~~~~a~a~~~vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~-a~~~-------vm~pe~aa~v~~~~~l~~ 196 (264)
T d1vrga2 125 IIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPS-AEIA-------VMGPEGAANIIFKREIEA 196 (264)
T ss_dssp HHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTT-CEEE-------SSCHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCCcccHHhhhccCCccCCCeeeeccc-eeEE-------ecCHHHhhhhhhhhhhhh
Confidence 466778899999999999999999999998873332 4778777776 5554 32344443332211 1
Q ss_pred -CCHHHHHH-H--HhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHH
Q 026127 158 -GSATARRD-V--LLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQL 205 (243)
Q Consensus 158 -g~~~~a~~-l--~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l 205 (243)
......++ + .+.-+.-++-.+.+.|++|.|+++ .+.........+.+
T Consensus 197 ~~~~~~~~~~~~~~~~e~~~~~~~aa~~g~iD~VIdP-~dTR~~L~~~Le~l 247 (264)
T d1vrga2 197 SSNPEETRRKLIEEYKQQFANPYIAASRGYVDMVIDP-RETRKYIMRALEVC 247 (264)
T ss_dssp SSCHHHHHHHHHHHHHHHTSSHHHHHHTTSSSEECCG-GGHHHHHHHHHHHH
T ss_pred hhCcHHHHHHHHHHHHHHhcCHHHHHHcCCCCeeECH-HHHHHHHHHHHHHH
Confidence 10111111 0 011122367788899999999987 55555544444433
|
| >d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.49 E-value=0.0022 Score=51.11 Aligned_cols=172 Identities=12% Similarity=0.099 Sum_probs=105.4
Q ss_pred eCcEEEEEEcCCCCCC-CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHH
Q 026127 7 HGDVFVLTLTGSSDVD-EHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYM 85 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~-~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 85 (243)
+|.-.-|.-|+|. . .-+++.+..+...+.++.+++..-+ +|.+.-. ..|..|.+-+ ....
T Consensus 63 ~G~~vgvia~~~~--~~~G~~~~~~a~Ka~~fi~lc~~~~iP--li~l~d~-pGf~~G~~~E--------------~~g~ 123 (263)
T d1xnya2 63 EGRPVGIVANQPM--QFAGCLDITASEKAARFVRTCDAFNVP--VLTFVDV-PGFLPGVDQE--------------HDGI 123 (263)
T ss_dssp TTEEEEEEEECTT--TGGGCBCHHHHHHHHHHHHHHHHTTCC--EEEEEEE-CCBCCCHHHH--------------HTTH
T ss_pred ccceEEEEecccc--eecCCcchhhHHHHHHHHHHHHHhCCc--eEEeecc-cccccchhHH--------------HHhH
Confidence 3433344456662 2 2489999999999999999876543 4444443 4466666433 2234
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHH----hcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHH
Q 026127 86 VESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLAL----SHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSAT 161 (243)
Q Consensus 86 ~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~----~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~ 161 (243)
.+...+++.++.++.+|.|+.|-|.+.|+|...+. ..|++++.++ +.++ ...|.++...+.+.-. ..
T Consensus 124 ~~~ga~~~~a~a~~~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~-a~~g-------vm~pe~aa~il~~~~~-~~ 194 (263)
T d1xnya2 124 IRRGAKLIFAYAEATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPT-AQIA-------VMGAQGAVNILHRRTI-AD 194 (263)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTT-CEEE-------SSCHHHHHHHHTHHHH-HS
T ss_pred HHHHHHHHHHHHccCCCeEEEEecCccccceeccCCcccCCcEEEEcch-hhhh-------ccCHHHHHHHHHHHHH-hh
Confidence 66778899999999999999999999998765533 3577777776 5554 4234444433322110 00
Q ss_pred -------HHHHHH--hcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhc
Q 026127 162 -------ARRDVL--LRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAG 207 (243)
Q Consensus 162 -------~a~~l~--l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~ 207 (243)
...++. ..-+..++-.+...|++|.|+++ .+..+......+.+..
T Consensus 195 a~~~~~~~~~~~~~~~~~~~~~p~~aA~~g~iD~VIdP-~dTR~~L~~~L~~l~~ 248 (263)
T d1xnya2 195 AGDDAEATRARLIQEYEDALLNPYTAAERGYVDAVIMP-SDTRRHIVRGLRQLRT 248 (263)
T ss_dssp CCTTCSSSHHHHHHHHHHHHSSSHHHHHHTSSSEECCG-GGHHHHHHHHHHHHTT
T ss_pred hccchHHHHHHHHHHHHHHhcCHHHHHHcccCCcccCH-HHHHHHHHHHHHHHhc
Confidence 000010 01112356678889999999987 5665555555555433
|
| >d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.31 E-value=0.0041 Score=49.75 Aligned_cols=167 Identities=9% Similarity=0.040 Sum_probs=101.5
Q ss_pred eCcEEEEEEcCCCCCC-CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHH
Q 026127 7 HGDVFVLTLTGSSDVD-EHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYM 85 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~-~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 85 (243)
+|.-.-|.-|+|. . .-.++.+..+...+.++.+++..-+ +|.+.-. ..|..|.+-+ ....
T Consensus 68 ~G~~vgvian~~~--~~~G~~~~~~~~Ka~rfi~lc~~~~iP--lv~l~dt-pGf~~G~~~E--------------~~g~ 128 (271)
T d2a7sa2 68 DGRPVGIVANQPT--HFAGCLDINASEKAARFVRTCDCFNIP--IVMLVDV-PGFLPGTDQE--------------YNGI 128 (271)
T ss_dssp SSCEEEEEEECTT--TGGGCBCHHHHHHHHHHHHHHHHTTCC--EEEEEEE-CCBCCCHHHH--------------HHCH
T ss_pred CCeEEEEEecccc--ccCCCcCHHHHHHHHHHHHHHHHhCCc--eEEeech-hhhhhhccHH--------------HhhH
Confidence 3433334445552 2 2489999999999999999876443 5555443 4566665333 2334
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHH----hcceeEEecCCceeeccccccCcCCChhhHHHHHH-HhCCH
Q 026127 86 VESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLAL----SHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRA-KVGSA 160 (243)
Q Consensus 86 ~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~----~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~-~~g~~ 160 (243)
.....+++.++.++..|.|+.+-|.+.|+|..... .+|++++.++ +.++ ...|..+...+.+ .+. .
T Consensus 129 ~~~ga~~~~a~a~~~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~-A~ig-------vMgpegaa~v~~~~~l~-~ 199 (271)
T d2a7sa2 129 IRRGAKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPT-AQIA-------VMGASGAVGFVYRQQLA-E 199 (271)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTT-CEEE-------SSCHHHHHHHHTTTTTT-G
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeCCccchhhhhhcccccccceEEEecc-eeEe-------ecCHHHHHHHHHHHhhh-h
Confidence 66778899999999999999999999998754332 3678777776 5554 4224433333222 121 0
Q ss_pred H----------H-HHHHHhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHH
Q 026127 161 T----------A-RRDVLLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLA 202 (243)
Q Consensus 161 ~----------~-a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a 202 (243)
. . ....-..-+.-++-.+.+.|++|.|+++ .+..+......
T Consensus 200 ~~~~~~~~~~~~~~~~~e~~e~~~~p~~aa~~g~iD~VIdP-~dTR~~L~~~L 251 (271)
T d2a7sa2 200 AAANGEDIDKLRLRLQQEYEDTLVNPYVAAERGYVDAVIPP-SHTRGYIGTAL 251 (271)
T ss_dssp GGTSSCCTTSSTTHHHHHHHTTTSBSHHHHHHTSSSEECCG-GGHHHHHHHHH
T ss_pred hhhcccchHHHHHHHHHHHHHHhcCHHHHHHcCCCCeeECH-HHHHHHHHHHH
Confidence 0 0 0011112233456778889999999987 44544433333
|
| >d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=97.15 E-value=0.0052 Score=48.93 Aligned_cols=173 Identities=11% Similarity=0.041 Sum_probs=103.2
Q ss_pred eCcEEEEEEcCCCCCC-CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHH
Q 026127 7 HGDVFVLTLTGSSDVD-EHRFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYM 85 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~-~N~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 85 (243)
+|.-.-|.=|+|. . ..+++.+..+...+.++-+++..-+ +|.+.-. ..|..|.+.++ ...
T Consensus 65 ~G~~vgvian~~~--~~~G~~~~~~a~Kaarfi~lc~~~~iP--lv~l~D~-pGf~~G~~~E~--------------~g~ 125 (264)
T d1on3a2 65 NGRSVGIVANQPS--VMSGCLDINASDKAAEFVNFCDSFNIP--LVQLVDV-PGFLPGVQQEY--------------GGI 125 (264)
T ss_dssp TTEEEEEEEECTT--SGGGCBCHHHHHHHHHHHHHHHHTTCC--EEEEEEE-CCBCCCHHHHH--------------TTH
T ss_pred ecceEEEEeccch--hcccccChHHHHHHHHHHHHHHhcCCc--eEEEecc-ccccccHHHHH--------------HHH
Confidence 3333334445562 3 3489999999999999998875443 4444433 45666664332 234
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEccccchHHHHHHH----hcceeEEecCCceeeccccccCcCCChhhHHHHHH-Hh---
Q 026127 86 VESFRPVVAAMMDLPMPTVAAVNGHAAAAGLTLAL----SHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRA-KV--- 157 (243)
Q Consensus 86 ~~~~~~~~~~l~~~~kp~Iaav~G~~~G~G~~la~----~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~-~~--- 157 (243)
.+...+++.++.++.+|.|+.|=|.+.|+|..-+. ..|++++.++ +.+ |...|.++...+.+ .+
T Consensus 126 i~~ga~~~~a~a~~~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~-A~~-------~vMg~Egaa~v~~~~el~a~ 197 (264)
T d1on3a2 126 IRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPS-AEI-------AVMGAEGAANVIFRKEIKAA 197 (264)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTT-CEE-------ESSCHHHHHHHHTHHHHHHS
T ss_pred HHHHHHHHHHHHcCCCCEEEEEeccccCccccccccccCChhheeeHHh-hHh-------hhccHHHHHHHHHhhhhhhh
Confidence 66778899999999999999999999998764443 3566666665 444 44234443332221 11
Q ss_pred CCHH--HHHHH-HhcCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhc
Q 026127 158 GSAT--ARRDV-LLRAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAG 207 (243)
Q Consensus 158 g~~~--~a~~l-~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~ 207 (243)
.... ....+ -..-+.-++-.+.+.|++|.|+++ .+..+......+.+..
T Consensus 198 ~~~~~~~~~~~~e~~~~~~~p~~aA~~g~iD~VIdP-~eTR~~L~~aLe~~~~ 249 (264)
T d1on3a2 198 DDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDP-ADTRRKIASALEMYAT 249 (264)
T ss_dssp SCHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEECCG-GGHHHHHHHHHHHGGG
T ss_pred hhhhhhhHHHHHHHHHHhcCHHHHHHcCCCCeeECH-HHHHHHHHHHHHHHhc
Confidence 1000 00001 111122356778889999999987 5555554444444443
|
| >d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.67 E-value=0.00055 Score=56.34 Aligned_cols=82 Identities=11% Similarity=0.058 Sum_probs=56.1
Q ss_pred CCCcEEEEEccccchHHHHHHHhcceeEEecCCceeeccccccCcCCChhhHHHHHHHhCCHHHHHHHHhcCcCC--C--
Q 026127 99 LPMPTVAAVNGHAAAAGLTLALSHDYVIMRRDKGVLYMSEVDIGLTLPDYFAALFRAKVGSATARRDVLLRAKKI--K-- 174 (243)
Q Consensus 99 ~~kp~Iaav~G~~~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~--~-- 174 (243)
-..|+|++|.|+|+|+|.-++..||++|+.++ +.+. ++-| ..+...+ |+.+ +
T Consensus 239 ~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~-s~i~-------ltGp----~~l~~~l------------G~eVy~s~~ 294 (333)
T d1uyra1 239 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEG-QPII-------LTGA----PAINKML------------GREVYTSNL 294 (333)
T ss_dssp HHSCEEEEESSCEETHHHHHHHHTCCEEEETT-CCEE-------SSCH----HHHHHHS------------SSCCCSCTH
T ss_pred CCCCEEEEEeCCccccceeecccccEEEEeCC-ceEE-------eeCH----HHHHHhc------------CccccCChh
Confidence 46999999999999999999999999999988 5442 2112 1222233 3333 2
Q ss_pred ----HHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcC
Q 026127 175 ----GEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208 (243)
Q Consensus 175 ----a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~ 208 (243)
++-..+.|.+|-++++ | .++.+.++++.+.
T Consensus 295 eLGG~~i~~~nGv~h~~a~d-d---~eai~~i~~~LSy 328 (333)
T d1uyra1 295 QLGGTQIMYNNGVSHLTAVD-D---LAGVEKIVEWMSY 328 (333)
T ss_dssp HHHSHHHHHHHTSSSEEESS-H---HHHHHHHHHHHTT
T ss_pred HhCCHhHHhhCCCceEEeCC-H---HHHHHHHHHHHhh
Confidence 2333579999999998 3 4455555555554
|
| >d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=96.32 E-value=0.13 Score=41.24 Aligned_cols=161 Identities=8% Similarity=0.068 Sum_probs=96.8
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 25 RFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 25 ~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
+++.+..+...+.++.+++..-+ +|.+.-. ..|-.|.+-+. ....+...+++.++.++.+|.|
T Consensus 98 ~l~~~~a~K~~rfi~lc~~~~iP--lv~l~D~-pGf~~g~~~E~--------------~g~~r~ga~~~~a~~~~~VP~i 160 (299)
T d1pixa3 98 KLYRQGLVKMNEFVTLCARDRLP--IVWIQDT-TGIDVGNDAEK--------------AELLGLGQSLIYSIQTSHIPQF 160 (299)
T ss_dssp EECHHHHHHHHHHHHHHHHTTCC--EEEEECC-CEECCSHHHHH--------------TTHHHHHHHHHHHHHTCCCCEE
T ss_pred ccCHHHHHHHHHHHHHHHHcCCe--EEEEEeC-CCcccchHHHh--------------hhHHHHHHHHHHHHHhhcceeE
Confidence 68899999999999999876543 4444332 44666654332 2245667788999999999999
Q ss_pred EEEccccchHHHHHHHhcceeEEecCCcee--eccccccCcCCChhhHHH-HHHHhCCHH------------HHHHHHh-
Q 026127 105 AAVNGHAAAAGLTLALSHDYVIMRRDKGVL--YMSEVDIGLTLPDYFAAL-FRAKVGSAT------------ARRDVLL- 168 (243)
Q Consensus 105 aav~G~~~G~G~~la~~~D~~ia~~~~~~f--~~pe~~~Gl~~p~~g~~~-l~~~~g~~~------------~a~~l~l- 168 (243)
+.|=|.+.|+|...+....+ .++ ..| ..|..++|...|..+... +.+.+. .. ..++++-
T Consensus 161 svi~r~~~G~a~~am~g~~~---~~~-~~~~~awP~aeigvMg~E~aa~vl~~~el~-~~~~~~~~~~e~~e~~~~~~~~ 235 (299)
T d1pixa3 161 EITLRKGTAAAHYVLGGPQG---NDT-NAFSIGTAATEIAVMNGETAATAMYSRRLA-KDRKAGKDLQPTIDKMNNLIQA 235 (299)
T ss_dssp EEECSEEETTHHHHTTCTTC---TTT-EEEEEECTTCEEESSCHHHHHHHHHHHHHH-HHHHTTCCCHHHHHHHHHHHHH
T ss_pred EEEecccccccccccccCcc---Ccc-cceecCCCccccccccchhhheeehhhhhh-hhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999988654332211 112 122 234455666234444333 222221 10 0011110
Q ss_pred cCcCCCHHHHHHcCcchhccCCHhHHHHHHHHHHHHHhcC
Q 026127 169 RAKKIKGEEALRMGLVEAAYDSEEQVAEASMRLAKQLAGR 208 (243)
Q Consensus 169 ~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l~~~ 208 (243)
.-+.-++-.+.+.|+||.|+++ .+.........+.+..+
T Consensus 236 ~~~~~sp~~aAs~~~iD~IIDP-~dTR~~L~~~Le~~~~~ 274 (299)
T d1pixa3 236 FYTKSRPKVCAELGLVDEIVDM-NKIRGYVEAFTEAAYQN 274 (299)
T ss_dssp HHHTTSHHHHHHHTSSSEECCT-TTHHHHHHHHHHHHTTS
T ss_pred HHHhcCHHHHHHhCCcCeeECH-HHHHHHHHHHHHHHHhC
Confidence 1133577888899999999987 55655555555555444
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| >d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.22 E-value=0.56 Score=38.76 Aligned_cols=78 Identities=14% Similarity=0.169 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcccCCCChhhHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026127 25 RFGPPAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGFDLAWAQAAGSRTGARERLHYMVESFRPVVAAMMDLPMPTV 104 (243)
Q Consensus 25 ~l~~~~~~~l~~~l~~~~~d~~v~~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I 104 (243)
.+..+....-.+.+..+.+.-.+= ||+-..-+.|+.|.+-+. ....+....++.++.++.+|+|
T Consensus 109 v~~p~sA~K~A~~i~d~cd~~~lP--Li~l~D~pGF~~G~~~E~--------------~gilr~GA~iv~A~~~~~vP~i 172 (404)
T d1uyra2 109 VWHPNSAFKTAQAINDFNNGEQLP--MMILANWRGFSGGQRDMF--------------NEVLKYGSFIVDALVDYKQPII 172 (404)
T ss_dssp CBCHHHHHHHHHHHHHHHTTSCCC--EEECCCCCCBCC--------------------CTHHHHHHHHHHHHHTCCSCEE
T ss_pred ccCchHHHHHHHHHHHhhhccccc--eEEeecCCcccCcHHHHH--------------HHHHHHHHHHHHHHHhcCCCEE
Confidence 456778888888888777544543 444444578888874332 2345667889999999999999
Q ss_pred EEE--ccccchHHHHH
Q 026127 105 AAV--NGHAAAAGLTL 118 (243)
Q Consensus 105 aav--~G~~~G~G~~l 118 (243)
..| .|.+.||.+.+
T Consensus 173 ~vI~~~g~~~GGa~vv 188 (404)
T d1uyra2 173 IYIPPTGELRGGSWVV 188 (404)
T ss_dssp EEECTTCEEEHHHHHT
T ss_pred EEEeCCcccchhhhhc
Confidence 999 67777765543
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