Citrus Sinensis ID: 026137

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGLDIKAVFSNSKL
Secondary Structure (PSIPRED)
ccEEEEEccEEEEEEccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEcHHcHHHHHHHHHHccEEEEEcccEEEEcccccccccccccHHHHHHHHHcHHHHHHHHHcccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccEEEEEEEcccccccccccHHHHHHHHHHHHHHHcccccEEEEEEcccccEEEccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHccEEEEcccccEEccccccccccccHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccEEEcccc
Coil and Loop (DISEMBL)
mctsekhgDVFVLTLtgssnvdehrlgpsAIDSILSAIAQAKaeatpgsafittshgkffsnGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAmmdlpmptvaaVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKqlagrkctGEVYAEIRKSLypdlcgvlgldIKAVFSNSKL
Flexible Loop (DISEMBL)
mctsekhgdvFVLTLtgssnvdehRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREkvgsatarrDVLLrakkikgeealrMGLVEAAYDSEERVAEASMrlgkqlagrkCTGEVYAEIRKSLYPDLCGVLGLDIKavfsnskl
Low Complexity Region (SEG)
MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTvaavnghaaaagFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGLDIKAVFSNSKL
Disordered region (IsUnstruct)
*********VFVLTLTG************AIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYD**********RLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGLDIKAVF*****
Disordered Region (DISOPRED)
MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAG***GARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGLDIKAVFSNSKL
Disordered Region (DISEMBL)
MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGLDIKAVFSNSKL
Disordered Region (DISPRO)
MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGLDIKAVFS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGLDIKAVFSNSKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	243	2.2.26 [Sep-21-2011]
Q3MIE0	300	Enoyl-CoA hydratase domai	yes	no	0.777	0.63	0.301	5e-09
A8ALR7	261	Carnitinyl-CoA dehydratas	yes	no	0.604	0.563	0.326	6e-09
A9MR28	261	Carnitinyl-CoA dehydratas	N/A	no	0.604	0.563	0.320	7e-09
P59395	261	Carnitinyl-CoA dehydratas	yes	no	0.604	0.563	0.320	2e-08
Q8Z9L5	261	Carnitinyl-CoA dehydratas	N/A	no	0.604	0.563	0.320	2e-08
Q8ZRX5	261	Carnitinyl-CoA dehydratas	yes	no	0.604	0.563	0.320	2e-08
B4TWR3	261	Carnitinyl-CoA dehydratas	yes	no	0.604	0.563	0.320	2e-08
B4TIG9	261	Carnitinyl-CoA dehydratas	yes	no	0.604	0.563	0.320	2e-08
B4T6J5	261	Carnitinyl-CoA dehydratas	yes	no	0.604	0.563	0.320	2e-08
B5BL54	261	Carnitinyl-CoA dehydratas	yes	no	0.604	0.563	0.314	5e-08

>sp|Q3MIE0|ECHD3_RAT Enoyl-CoA hydratase domain-containing protein 3, mitochondrial OS=Rattus norvegicus GN=Echdc3 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 95/209 (45%), Gaps = 20/209 (9%)

Query: 42  KAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHY--MFKSFRPLVAAMMDL 99
           +AE+      I ++ G  FS+G DL         TGA+ R ++  +F++   ++  + + 
Sbjct: 85  EAESEDLKVIIISAEGPVFSSGHDLK------ELTGAQGRDYHTEVFQTCSEVMMLIRNH 138

Query: 100 PMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGS 159
           P+P VA VNG A AAG  L  S D  V   DK       V++GL       AL     G 
Sbjct: 139 PVPIVAMVNGLATAAGCQLVASCDIAVA-SDKSSFATPGVNVGLFCSTPAVAL-----GR 192

Query: 160 ATARR---DVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLA--GRKCTGEV 214
           A  R+   ++L   + I  +EALR GL+      EE++ E + R+ K++A   R      
Sbjct: 193 AVPRKVALEMLFTGEPISAQEALRHGLISKVV-PEEQLEEEATRIAKKIASLSRSVVALG 251

Query: 215 YAEIRKSLYPDLCGVLGLDIKAVFSNSKL 243
            A   K L  DL     L  +A+  N  L
Sbjct: 252 KATFYKQLPQDLSTAYFLASQAMVDNLTL 280

Rattus norvegicus (taxid: 10116)

>sp|A8ALR7|CAID_CITK8 Carnitinyl-CoA dehydratase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=caiD PE=3 SV=1

 Score = 61.2 bits (147), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 9/156 (5%)

Query: 50  AFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNG 109
           A IT    KFFS G+DL  A A G    A     +    F  L   + DL  P +AAVNG
Sbjct: 50  AIITGGGEKFFSAGWDLK-AAAEGEAPDA----DFGPGGFAGLTE-IFDLDKPVIAAVNG 103

Query: 110 HAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLR 169
           +A   GF LAL+ D++V   D     + E  +G+ +PD    L   K+       ++L+ 
Sbjct: 104 YAFGGGFELALAADFIVC-ADNASFALPEAKLGI-VPDSGGVLRLPKLLPPAIVNEMLMT 161

Query: 170 AKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQL 205
            +++  EEALR G+V     S++ + +++  L +QL
Sbjct: 162 GRRMDAEEALRWGIVNRVV-SQQALMDSARELAQQL 196

Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA.

Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) (taxid: 290338)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|A9MR28|CAID_SALAR Carnitinyl-CoA dehydratase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=caiD PE=3 SV=1

 Score = 60.8 bits (146), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 9/156 (5%)

Query: 50  AFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNG 109
           A IT +  KFFS G+DL  A A G    A     +    F  L   + DL  P +AAVNG
Sbjct: 50  AIITGAGEKFFSAGWDLK-AAAEGEAPDA----DFGPGGFAGLTE-LFDLNKPVIAAVNG 103

Query: 110 HAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLR 169
           +A   GF LAL+ D+++   D     + E  +G+ +PD    L   K+       D+++ 
Sbjct: 104 YAFGGGFELALAADFIIC-ADHASFALPEAKLGI-VPDSGGVLRLPKILPPAIVNDMVMT 161

Query: 170 AKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQL 205
            +++  EEALR G+V       E + +++  L +QL
Sbjct: 162 GRRMTAEEALRWGVVNRVVSPHE-LLDSARELARQL 196

Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA.

Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) (taxid: 41514)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|P59395|CAID_SHIFL Carnitinyl-CoA dehydratase OS=Shigella flexneri GN=caiD PE=3 SV=2

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 9/156 (5%)

Query: 50  AFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNG 109
           A IT +  KFFS G+DL  A A G    A     +    F  L   + +L  P +AAVNG
Sbjct: 50  AIITGAGEKFFSAGWDLK-AAAEGEAPDA----DFGPGGFAGLTE-IFNLDKPVIAAVNG 103

Query: 110 HAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLR 169
           +A   GF LAL+ D++V   D     + E  +G+ +PD    L   K+   T   ++++ 
Sbjct: 104 YAFGGGFELALAADFIVC-ADNASFALPEAKLGI-VPDSGGVLRLPKILPPTIVNEMVMT 161

Query: 170 AKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQL 205
            +++  EEALR G+V     S+  + + +  L +QL
Sbjct: 162 GRRMGAEEALRWGIVNRVV-SQAELMDNARELAQQL 196

Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA.

Shigella flexneri (taxid: 623)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q8Z9L5|CAID_SALTI Carnitinyl-CoA dehydratase OS=Salmonella typhi GN=caiD PE=3 SV=3

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 9/156 (5%)

Query: 50  AFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNG 109
           A IT    KFFS G+DL  A A G    A     +    F  L   + DL  P +AAVNG
Sbjct: 50  AIITGGGEKFFSAGWDLK-AAAEGEAPDA----DFGPGGFAGLTE-IFDLDKPVIAAVNG 103

Query: 110 HAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLR 169
           +A   GF LAL+ D++V   +     + E  +G+ +PD    L   K+       ++++ 
Sbjct: 104 YAFGGGFELALAADFIVCAENAS-FALPEAKLGI-VPDSGGVLRLPKLLPPAIVNEMVMT 161

Query: 170 AKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQL 205
            +++  EEALR G+V     S+  + E++  L +QL
Sbjct: 162 GRRMSAEEALRWGIVNRVV-SQSELMESARELAQQL 196

Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA.

Salmonella typhi (taxid: 90370)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q8ZRX5|CAID_SALTY Carnitinyl-CoA dehydratase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=caiD PE=3 SV=3

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 9/156 (5%)

Query: 50  AFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNG 109
           A IT    KFFS G+DL  A A G    A     +    F  L   + DL  P +AAVNG
Sbjct: 50  AIITGGGEKFFSAGWDLK-AAAEGEAPDA----DFGPGGFAGLTE-IFDLDKPVIAAVNG 103

Query: 110 HAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLR 169
           +A   GF LAL+ D++V   +     + E  +G+ +PD    L   K+       ++++ 
Sbjct: 104 YAFGGGFELALAADFIVCAENAS-FALPEAKLGI-VPDSGGVLRLPKLLPPAIVNEMVMT 161

Query: 170 AKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQL 205
            +++  EEALR G+V     S+  + E++  L +QL
Sbjct: 162 GRRMSAEEALRWGVVNRVV-SQSELMESARELAQQL 196

Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA.

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|B4TWR3|CAID_SALSV Carnitinyl-CoA dehydratase OS=Salmonella schwarzengrund (strain CVM19633) GN=caiD PE=3 SV=1

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 9/156 (5%)

Query: 50  AFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNG 109
           A IT    KFFS G+DL  A A G    A     +    F  L   + DL  P +AAVNG
Sbjct: 50  AIITGGGEKFFSAGWDLK-AAAEGEAPDA----DFGPGGFAGLTE-IFDLDKPVIAAVNG 103

Query: 110 HAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLR 169
           +A   GF LAL+ D++V   +     + E  +G+ +PD    L   K+       ++++ 
Sbjct: 104 YAFGGGFELALAADFIVCAENAS-FALPEAKLGI-VPDSGGVLRLPKLLPPAIVNEMVMT 161

Query: 170 AKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQL 205
            +++  EEALR G+V     S+  + E++  L +QL
Sbjct: 162 GRRMSAEEALRWGVVNRVV-SQSELMESARELAQQL 196

Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA.

Salmonella schwarzengrund (strain CVM19633) (taxid: 439843)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|B4TIG9|CAID_SALHS Carnitinyl-CoA dehydratase OS=Salmonella heidelberg (strain SL476) GN=caiD PE=3 SV=1

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 9/156 (5%)

Query: 50  AFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNG 109
           A IT    KFFS G+DL  A A G    A     +    F  L   + DL  P +AAVNG
Sbjct: 50  AIITGGGEKFFSAGWDLK-AAAEGEAPDA----DFGPGGFAGLTE-IFDLDKPVIAAVNG 103

Query: 110 HAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLR 169
           +A   GF LAL+ D++V   +     + E  +G+ +PD    L   K+       ++++ 
Sbjct: 104 YAFGGGFELALAADFIVCAENAS-FALPEAKLGI-VPDSGGVLRLPKLLPPAIVNEMVMT 161

Query: 170 AKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQL 205
            +++  EEALR G+V     S+  + E++  L +QL
Sbjct: 162 GRRMSAEEALRWGVVNRVV-SQSELMESARELAQQL 196

Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA.

Salmonella heidelberg (strain SL476) (taxid: 454169)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|B4T6J5|CAID_SALNS Carnitinyl-CoA dehydratase OS=Salmonella newport (strain SL254) GN=caiD PE=3 SV=1

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 9/156 (5%)

Query: 50  AFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNG 109
           A IT    KFFS G+DL  A A G    A     +    F  L   + DL  P +AAVNG
Sbjct: 50  AIITGGGEKFFSAGWDLK-AAAEGEAPDA----DFGPGGFAGLTE-IFDLDKPVIAAVNG 103

Query: 110 HAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLR 169
           +A   GF LAL+ D++V   +     + E  +G+ +PD    L   K+       ++++ 
Sbjct: 104 YAFGGGFELALAADFIVCAENAS-FALPEAKLGI-VPDSGGVLRLPKLLPPAIVNEMVMT 161

Query: 170 AKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQL 205
            +++  EEALR G+V     S+  + E++  L +QL
Sbjct: 162 GRRMSAEEALRWGVVNRVV-SQSELMESARELAQQL 196

Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA.

Salmonella newport (strain SL254) (taxid: 423368)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|B5BL54|CAID_SALPK Carnitinyl-CoA dehydratase OS=Salmonella paratyphi A (strain AKU_12601) GN=caiD PE=3 SV=1

 Score = 58.5 bits (140), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 77/156 (49%), Gaps = 9/156 (5%)

Query: 50  AFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNG 109
           A IT    KFFS G+DL  A A G    A     +    F  L   + DL  P +AAVNG
Sbjct: 50  AIITGGGEKFFSAGWDLK-AAAEGEAPDA----DFGPGGFAGLTE-IFDLDKPVIAAVNG 103

Query: 110 HAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLR 169
           +A   GF LAL+ D++V   +     + E  +G+ +PD    L   K+       ++++ 
Sbjct: 104 YAFGGGFELALAADFIVCAENAS-FALPEAKLGI-VPDSGGVLRLPKLLPPAIVNEMVMT 161

Query: 170 AKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQL 205
            +++  EEALR G+V     S+  + +++  L +QL
Sbjct: 162 GRRMSAEEALRWGIVNRVV-SQSELMDSARELAQQL 196

Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA.

Salmonella paratyphi A (strain AKU_12601) (taxid: 554290)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
297800796	240	enoyl-CoA hydratase/isomerase family pro	0.983	0.995	0.647	5e-82
224111012	238	predicted protein [Populus trichocarpa]	0.946	0.966	0.696	2e-81
15236499	238	3-hydroxyacyl-CoA dehydratase 1 [Arabido	0.934	0.953	0.630	3e-79
297800794	238	enoyl-CoA hydratase/isomerase family pro	0.934	0.953	0.630	2e-78
15236498	240	indole-3-butyric acid response 10 [Arabi	0.983	0.995	0.651	2e-78
225433001	238	PREDICTED: carnitinyl-CoA dehydratase-li	0.958	0.978	0.620	5e-78
225432999	238	PREDICTED: carnitinyl-CoA dehydratase-li	0.958	0.978	0.603	8e-78
21555734	240	carnitine racemase like protein [Arabido	0.983	0.995	0.647	3e-77
147858838	238	hypothetical protein VITISV_036844 [Viti	0.958	0.978	0.599	3e-76
449432584	239	PREDICTED: fatty acid oxidation complex	0.983	1.0	0.609	1e-75

>gi|297800796|ref|XP_002868282.1| enoyl-CoA hydratase/isomerase family protein [Arabidopsis lyrata subsp. lyrata] gi|297314118|gb|EFH44541.1| enoyl-CoA hydratase/isomerase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 158/244 (64%), Positives = 203/244 (83%), Gaps = 5/244 (2%)

Query: 1   MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFF 60
           MCT EK GD+F+LTLTG     EHR  P  I +ILS + QAK+++T GS  ITT++GKFF
Sbjct: 1   MCTLEKRGDLFLLTLTGDG---EHRFHPDTIATILSLLEQAKSQSTRGSILITTANGKFF 57

Query: 61  SNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILAL 120
           SNGFDLAWAQ AGS+TGA  R+H M +SF+P+VAA++DLPMPT+AA+NGHAAAAG +LA+
Sbjct: 58  SNGFDLAWAQTAGSKTGAANRLHQMVESFKPVVAALLDLPMPTIAALNGHAAAAGLMLAI 117

Query: 121 SHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALR 180
           SHDYV MR+D+GVLYMSEVDIGL++PDY +AL R K+G++ ARR++LL  KKI+GEEA+ 
Sbjct: 118 SHDYVFMRKDRGVLYMSEVDIGLSMPDYFSALVRAKIGTSAARRELLLSGKKIRGEEAVG 177

Query: 181 MGLVE-AAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGLDIKAVFS 239
           +G+V+ AAYDSEE V EAS+RLG++LA +K +GEVYA IRKSLYP+LCG+LGL+ + VF+
Sbjct: 178 LGIVDSAAYDSEEGVVEASVRLGEKLAAKKWSGEVYASIRKSLYPELCGILGLEAR-VFA 236

Query: 240 NSKL 243
             KL
Sbjct: 237 TPKL 240

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111012|ref|XP_002315715.1| predicted protein [Populus trichocarpa] gi|222864755|gb|EEF01886.1| predicted protein [Populus trichocarpa]

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 163/234 (69%), Positives = 196/234 (83%), Gaps = 4/234 (1%)

Query: 1   MCTSEKHG-DVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKF 59
           MCT EK G ++F+LTLTG+   DEHRL P+ IDSILSA+ QAK++AT GS  ITTS GKF
Sbjct: 1   MCTLEKTGTNIFILTLTGA---DEHRLNPTLIDSILSALRQAKSQATKGSVLITTSRGKF 57

Query: 60  FSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILA 119
           FSNGFDLAWAQAA S+  A ER+H+M +  +P+VA ++ LPMPT+AAVNGHAAAAG ILA
Sbjct: 58  FSNGFDLAWAQAASSKPKATERLHHMVELLKPVVAELISLPMPTIAAVNGHAAAAGLILA 117

Query: 120 LSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEAL 179
           LSHDY+ M+RD+GVLYMSEVDIGLT PDY  ALFR KVGS +  RDVLLR  K+KG+EA+
Sbjct: 118 LSHDYIHMKRDRGVLYMSEVDIGLTFPDYFTALFRAKVGSPSVLRDVLLRGAKVKGDEAV 177

Query: 180 RMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGLD 233
           R G+VEAA+D+EER++EA+MRLG+QLA RK  GE+Y EIRKSLYP+LCGVLGLD
Sbjct: 178 RRGIVEAAHDNEERLSEATMRLGEQLASRKWLGEIYKEIRKSLYPELCGVLGLD 231

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236499|ref|NP_193180.1| 3-hydroxyacyl-CoA dehydratase 1 [Arabidopsis thaliana] gi|2244800|emb|CAB10223.1| carnitine racemase like protein [Arabidopsis thaliana] gi|7268150|emb|CAB78486.1| carnitine racemase like protein [Arabidopsis thaliana] gi|18252927|gb|AAL62390.1| carnitine racemase like protein [Arabidopsis thaliana] gi|30023700|gb|AAP13383.1| At4g14440 [Arabidopsis thaliana] gi|332658045|gb|AEE83445.1| 3-hydroxyacyl-CoA dehydratase 1 [Arabidopsis thaliana]

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 147/233 (63%), Positives = 185/233 (79%), Gaps = 6/233 (2%)

Query: 1   MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFF 60
           MCT EK GD+F+LTLTG    DEHR  P  I S+LS + QAK+++T GS  ITT HGKFF
Sbjct: 1   MCTLEKRGDLFLLTLTGE---DEHRFHPDTIASVLSLLEQAKSQSTKGSVLITTGHGKFF 57

Query: 61  SNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILAL 120
           SNGFDLAWAQ+AG   GA +R+H M KSF+P++AA++DLPMPT+AA+NGHAAA+G + AL
Sbjct: 58  SNGFDLAWAQSAGH--GAIKRMHQMVKSFKPVLAALLDLPMPTIAALNGHAAASGLMFAL 115

Query: 121 SHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALR 180
           SHDYV MR+D+GVLYMSEVDIGL +PDY +AL   KVGS  ARR++LL  KK+KGEEA+ 
Sbjct: 116 SHDYVFMRKDRGVLYMSEVDIGLPVPDYFSALVVAKVGSGIARRELLLSGKKLKGEEAVA 175

Query: 181 MGLVE-AAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGL 232
           +G+V+ AA+DS E V EA++ LG+ LA +K  GEVYA IRKSLYP+LC ++ L
Sbjct: 176 LGIVDSAAHDSAEGVVEATVSLGESLAAKKWNGEVYATIRKSLYPELCRMVDL 228

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800794|ref|XP_002868281.1| enoyl-CoA hydratase/isomerase family protein [Arabidopsis lyrata subsp. lyrata] gi|297314117|gb|EFH44540.1| enoyl-CoA hydratase/isomerase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  298 bits (763), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 147/233 (63%), Positives = 183/233 (78%), Gaps = 6/233 (2%)

Query: 1   MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFF 60
           MCT EK GD+F LTLTG    DEHR  P  I S+LS + QAK+++T GS  ITT HG FF
Sbjct: 1   MCTLEKRGDLFHLTLTGD---DEHRFHPDTIASVLSLLEQAKSQSTKGSVLITTGHGNFF 57

Query: 61  SNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILAL 120
           SNGFDLAWAQ+A  R GA ER+H M KSF+P++AA++DLPMPT+AA+NGHAAA+G + AL
Sbjct: 58  SNGFDLAWAQSA--RHGAIERMHQMVKSFKPVLAALLDLPMPTIAALNGHAAASGLMFAL 115

Query: 121 SHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALR 180
           SHDYV MR+D+GVLYMSEVDIGL +PDY +AL   KVGS  ARR++LL  KK+KGE+A+ 
Sbjct: 116 SHDYVFMRKDRGVLYMSEVDIGLPVPDYFSALVVAKVGSGIARRELLLSGKKLKGEDAVA 175

Query: 181 MGLVE-AAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGL 232
           +G+V+ AA+DS E V EA++ LG+ LA +K  GEVYA IRKSLYP+LC +L L
Sbjct: 176 LGIVDSAAHDSAEGVVEATVSLGESLAAKKWNGEVYASIRKSLYPELCRMLEL 228

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236498|ref|NP_193179.1| indole-3-butyric acid response 10 [Arabidopsis thaliana] gi|14190481|gb|AAK55721.1|AF380640_1 AT4g14430/dl3255c [Arabidopsis thaliana] gi|2244799|emb|CAB10222.1| carnitine racemase like protein [Arabidopsis thaliana] gi|7268149|emb|CAB78485.1| carnitine racemase like protein [Arabidopsis thaliana] gi|15810107|gb|AAL06979.1| AT4g14430/dl3255c [Arabidopsis thaliana] gi|110738734|dbj|BAF01291.1| carnitine racemase like protein [Arabidopsis thaliana] gi|332658044|gb|AEE83444.1| indole-3-butyric acid response 10 [Arabidopsis thaliana]

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 159/244 (65%), Positives = 202/244 (82%), Gaps = 5/244 (2%)

Query: 1   MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFF 60
           MCT EK GD+F+LTLTG     EHR  P  I +ILS + QAK+++T GS  ITT++GKFF
Sbjct: 1   MCTLEKRGDLFLLTLTGDG---EHRFHPDTIATILSLLEQAKSQSTRGSILITTANGKFF 57

Query: 61  SNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILAL 120
           SNGFDLAWAQ AGS+TGA  R+H M +SF+P+VAA++DLPMPT+AA+NGHAAAAG ILAL
Sbjct: 58  SNGFDLAWAQTAGSKTGAANRLHQMVESFKPVVAALLDLPMPTIAALNGHAAAAGLILAL 117

Query: 121 SHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALR 180
           SHDYV MR+D+GVLYMSEVDIGL++PDY +AL R K+G++ ARR++LL  KKI+GEEA+ 
Sbjct: 118 SHDYVFMRKDRGVLYMSEVDIGLSMPDYFSALVRAKIGTSAARRELLLSGKKIRGEEAVG 177

Query: 181 MGLVE-AAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGLDIKAVFS 239
           +G+V+ AAYDSEE V  AS+RLG++LA +K +GEVYA IRKSLYP+LCG+LGL+ + VF+
Sbjct: 178 LGIVDSAAYDSEEGVVVASVRLGEKLAAKKWSGEVYASIRKSLYPELCGILGLETR-VFA 236

Query: 240 NSKL 243
             KL
Sbjct: 237 TPKL 240

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433001|ref|XP_002284547.1| PREDICTED: carnitinyl-CoA dehydratase-like [Vitis vinifera]

 Score =  296 bits (758), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 147/237 (62%), Positives = 193/237 (81%), Gaps = 4/237 (1%)

Query: 1   MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFF 60
           MCT E+ G++F LTLTG    +EHRLGPS  DSI SA+AQ K++ATPGSA ITT+ GKFF
Sbjct: 1   MCTLEQRGNLFFLTLTGD---NEHRLGPSLFDSIRSALAQVKSQATPGSALITTAQGKFF 57

Query: 61  SNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILAL 120
           SNG DLAWAQAAGS +  R+R+ ++   F+P+VA ++ LPMPT+AAV+GHAAAAGF+LA+
Sbjct: 58  SNGLDLAWAQAAGS-SSFRDRLSHLLDCFKPIVADLLSLPMPTIAAVSGHAAAAGFMLAI 116

Query: 121 SHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALR 180
           SHDYV+M+ D+ VLYMSE+DIGLT PDY  A+ + K+    ARRDV+LRAKK+K EEA+R
Sbjct: 117 SHDYVLMKNDRSVLYMSELDIGLTFPDYFMAMMKSKISDPAARRDVMLRAKKVKAEEAVR 176

Query: 181 MGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGLDIKAV 237
           MG+V++A+DS E   EA++RL +QL+GRK  GEVYAEIRK+++P++CG+LGL  +AV
Sbjct: 177 MGIVDSAHDSAESTVEAAVRLAEQLSGRKWNGEVYAEIRKAMHPEVCGLLGLSHRAV 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432999|ref|XP_002284541.1| PREDICTED: carnitinyl-CoA dehydratase-like [Vitis vinifera]

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 143/237 (60%), Positives = 196/237 (82%), Gaps = 4/237 (1%)

Query: 1   MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFF 60
           MCT E+ G++F+L LTG    +EHRLGP+ +DSI SA+AQ K++ATPGSA ITT+HGKFF
Sbjct: 1   MCTLEQRGNLFLLILTGD---NEHRLGPTLVDSIRSALAQVKSQATPGSALITTAHGKFF 57

Query: 61  SNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILAL 120
           SNG DL WAQAAGS +G R+R++++  +F+P++A ++ LPMPT+AAV+GHAAAAGF+LA+
Sbjct: 58  SNGLDLPWAQAAGS-SGFRDRLNHLVNNFKPIIADLLSLPMPTIAAVSGHAAAAGFMLAI 116

Query: 121 SHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALR 180
           SHDYV+M+ D+ VLYMSE+DIGLT  DY  A+ + ++    ARRDV+LRAKK+K EEA+R
Sbjct: 117 SHDYVLMKNDRSVLYMSELDIGLTFADYFMAMLKSRISDPAARRDVMLRAKKVKAEEAVR 176

Query: 181 MGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGLDIKAV 237
           MG+V++A+DS E   EA++RL +QL+GRK  GEVYAEIRK+++P++CG+LGL  +AV
Sbjct: 177 MGIVDSAHDSAESTVEAAVRLAEQLSGRKWNGEVYAEIRKAMHPEVCGLLGLSHRAV 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21555734|gb|AAM63923.1| carnitine racemase like protein [Arabidopsis thaliana]

 Score =  294 bits (752), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 158/244 (64%), Positives = 201/244 (82%), Gaps = 5/244 (2%)

Query: 1   MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFF 60
           MCT EK GD+F+LTLTG     EHR  P  I +ILS + QAK+++T GS  ITT++GKFF
Sbjct: 1   MCTLEKRGDLFLLTLTGDG---EHRFHPDTIATILSLLEQAKSQSTRGSILITTANGKFF 57

Query: 61  SNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILAL 120
           SNGFDLAWAQ AGS+TGA  R+H M +SF+P+VAA++DLPMPT+AA+NGHAAAAG ILAL
Sbjct: 58  SNGFDLAWAQTAGSKTGAANRLHQMVESFKPVVAALLDLPMPTIAALNGHAAAAGLILAL 117

Query: 121 SHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALR 180
           SHDYV MR+D+GVLYMSEVDIGL++PDY +AL R K+G++ ARR++LL  KKI+GEEA+ 
Sbjct: 118 SHDYVFMRKDRGVLYMSEVDIGLSMPDYFSALVRAKIGTSAARRELLLSGKKIRGEEAVG 177

Query: 181 MGLVE-AAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGLDIKAVFS 239
           +G+V+ AAYDSEE V  AS+RLG++LA +K +GEVYA IRKSLYP+LC +LGL+ + VF+
Sbjct: 178 LGIVDSAAYDSEEGVVVASVRLGEKLAAKKWSGEVYASIRKSLYPELCEILGLETR-VFA 236

Query: 240 NSKL 243
             KL
Sbjct: 237 TPKL 240

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858838|emb|CAN82902.1| hypothetical protein VITISV_036844 [Vitis vinifera]

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 142/237 (59%), Positives = 193/237 (81%), Gaps = 4/237 (1%)

Query: 1   MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFF 60
           MCT E+ G++F+L LTG    +EHRLGP+ +DSI SA+AQ K++ATPGSA ITT+H KFF
Sbjct: 1   MCTLEERGNLFLLILTGD---NEHRLGPTLVDSIRSALAQVKSQATPGSALITTAHDKFF 57

Query: 61  SNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILAL 120
           SNG DL WAQAAGS +G R+R++++  +F+P++A ++ LPMPT+AAV+GHAAAAGF LA+
Sbjct: 58  SNGLDLPWAQAAGS-SGFRDRLNHLVNNFKPIIADLLSLPMPTIAAVSGHAAAAGFRLAI 116

Query: 121 SHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALR 180
           SHDYV+M+ D+ VLYMSE+DIGLT  DY  A+ + K+    ARRDV+LRAKK+K EEA+R
Sbjct: 117 SHDYVLMKNDRSVLYMSELDIGLTFADYFMAMLKSKISDPAARRDVMLRAKKVKAEEAVR 176

Query: 181 MGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGLDIKAV 237
           MG+V++ +DS E   EA++RL +QL+GRK  GEVYAEIRK+++P++CG+LGL  +AV
Sbjct: 177 MGIVDSTHDSAESTVEAAVRLAEQLSGRKWNGEVYAEIRKAMHPEVCGLLGLSHRAV 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432584|ref|XP_004134079.1| PREDICTED: fatty acid oxidation complex subunit alpha-like [Cucumis sativus]

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 148/243 (60%), Positives = 193/243 (79%), Gaps = 4/243 (1%)

Query: 1   MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFF 60
           MCT EK G+ F+LTLTG    D+HRL PS I+SIL A++Q KA+A+P S  ITTSHGKFF
Sbjct: 1   MCTVEKRGNFFILTLTGD---DDHRLSPSLINSILKALSQVKAQASPASVLITTSHGKFF 57

Query: 61  SNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILAL 120
           SNGFDL WA +AGS + AR R++++ + F+ +VA ++ LPMPT+AA+ GHAAAAGF LAL
Sbjct: 58  SNGFDLPWALSAGSVSAARHRLNHLIEIFKSVVAELISLPMPTIAAITGHAAAAGFTLAL 117

Query: 121 SHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALR 180
           SHDY++MR D+GVLYM E+D+GLTLPDY  ALF+ K+GS+ A RD++LR  K++GE A+R
Sbjct: 118 SHDYLIMRSDRGVLYMRELDLGLTLPDYFMALFKSKIGSSLAMRDLILRGMKVRGEAAVR 177

Query: 181 MGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGLDIKAVFSN 240
           MG+V++A+D E+ V  A++RLG+QLAGR   GEVYAEIRKSLYP++  VLGL  K + S 
Sbjct: 178 MGIVDSAHDGEDSVVNAAVRLGEQLAGRNWDGEVYAEIRKSLYPEVSEVLGLPGKPI-SI 236

Query: 241 SKL 243
           SKL
Sbjct: 237 SKL 239

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
TAIR|locus:2129730	240	IBR10 "indole-3-butyric acid r	0.983	0.995	0.610	2.7e-75
TAIR|locus:2129740	238	HCD1 "3-hydroxyacyl-CoA dehydr	0.934	0.953	0.592	5.6e-68
TAIR|locus:2034178	240	ECI1 ""delta(3), delta(2)-enoy	0.876	0.887	0.439	2.5e-42
DICTYBASE|DDB_G0282341	249	DDB_G0282341 "enoyl-CoA hydrat	0.942	0.919	0.272	1.8e-16
ASPGD|ASPL0000001974	244	AN6767 [Emericella nidulans (t	0.843	0.840	0.294	6.9e-15
DICTYBASE|DDB_G0289147	267	DDB_G0289147 "enoyl-CoA hydrat	0.740	0.674	0.229	5.6e-08
TIGR_CMR|CHY_2254	263	CHY_2254 "enoyl-CoA hydratase/	0.934	0.863	0.221	2.2e-05
TIGR_CMR|SPO_1882	258	SPO_1882 "enoyl-CoA hydratase/	0.641	0.604	0.299	0.00033
TIGR_CMR|CPS_1601	262	CPS_1601 "enoyl-CoA hydratase/	0.773	0.717	0.247	0.00034
RGD|1589147	300	Echdc3 "enoyl Coenzyme A hydra	0.851	0.69	0.256	0.00035

TAIR|locus:2129730 IBR10 "indole-3-butyric acid response 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
 Identities = 149/244 (61%), Positives = 190/244 (77%)

Query:     1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFF 60
             MCT EK GD+F+LTLTG     EHR  P  I +ILS + QAK+++T GS  ITT++GKFF
Sbjct:     1 MCTLEKRGDLFLLTLTGDG---EHRFHPDTIATILSLLEQAKSQSTRGSILITTANGKFF 57

Query:    61 SNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTXXXXXXXXXXXXFILAL 120
             SNGFDLAWAQ AGS+TGA  R+H M +SF+P+VAA++DLPMPT             ILAL
Sbjct:    58 SNGFDLAWAQTAGSKTGAANRLHQMVESFKPVVAALLDLPMPTIAALNGHAAAAGLILAL 117

Query:   121 SHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALR 180
             SHDYV MR+D+GVLYMSEVDIGL++PDY +AL R K+G++ ARR++LL  KKI+GEEA+ 
Sbjct:   118 SHDYVFMRKDRGVLYMSEVDIGLSMPDYFSALVRAKIGTSAARRELLLSGKKIRGEEAVG 177

Query:   181 MGLVE-AAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGLDIKAVFS 239
             +G+V+ AAYDSEE V  AS+RLG++LA +K +GEVYA IRKSLYP+LCG+LGL+ + VF+
Sbjct:   178 LGIVDSAAYDSEEGVVVASVRLGEKLAAKKWSGEVYASIRKSLYPELCGILGLETR-VFA 236

Query:   240 NSKL 243
               KL
Sbjct:   237 TPKL 240

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=IGI;IDA

GO:0009062 "fatty acid catabolic process" evidence=RCA;IMP

GO:0080024 "indolebutyric acid metabolic process" evidence=IMP

GO:0080026 "response to indolebutyric acid stimulus" evidence=IMP

GO:0048767 "root hair elongation" evidence=IMP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TAIR|locus:2129740 HCD1 "3-hydroxyacyl-CoA dehydratase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
 Identities = 138/233 (59%), Positives = 173/233 (74%)

Query:     1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFF 60
             MCT EK GD+F+LTLTG    DEHR  P  I S+LS + QAK+++T GS  ITT HGKFF
Sbjct:     1 MCTLEKRGDLFLLTLTGE---DEHRFHPDTIASVLSLLEQAKSQSTKGSVLITTGHGKFF 57

Query:    61 SNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTXXXXXXXXXXXXFILAL 120
             SNGFDLAWAQ+AG   GA +R+H M KSF+P++AA++DLPMPT             + AL
Sbjct:    58 SNGFDLAWAQSAGH--GAIKRMHQMVKSFKPVLAALLDLPMPTIAALNGHAAASGLMFAL 115

Query:   121 SHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALR 180
             SHDYV MR+D+GVLYMSEVDIGL +PDY +AL   KVGS  ARR++LL  KK+KGEEA+ 
Sbjct:   116 SHDYVFMRKDRGVLYMSEVDIGLPVPDYFSALVVAKVGSGIARRELLLSGKKLKGEEAVA 175

Query:   181 MGLVE-AAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGL 232
             +G+V+ AA+DS E V EA++ LG+ LA +K  GEVYA IRKSLYP+LC ++ L
Sbjct:   176 LGIVDSAAHDSAEGVVEATVSLGESLAAKKWNGEVYATIRKSLYPELCRMVDL 228

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0008809 "carnitine racemase activity" evidence=ISS

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=IGI;IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009062 "fatty acid catabolic process" evidence=IMP

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2034178 ECI1 ""delta(3), delta(2)-enoyl CoA isomerase 1"" [Arabidopsis thaliana (taxid:3702)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 98/223 (43%), Positives = 139/223 (62%)

Query:     1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEAT-PGSAFITTSHGKF 59
             MC+ EK   +F+L LTG     EHRL P+ +DS+ S I Q +++ +   S  ITTS GKF
Sbjct:     1 MCSLEKRDRLFILKLTGDG---EHRLNPTLLDSLRSTINQIRSDPSFSQSVLITTSDGKF 57

Query:    60 FSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTXXXXXXXXXXXXFILA 119
             FSNG+DLA A++  S +        M    R LVA ++ LPMPT             ILA
Sbjct:    58 FSNGYDLALAESNPSLSVV------MDAKLRSLVADLISLPMPTIAAVTGHASAAGCILA 111

Query:   120 LSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEAL 179
             +SHDYV+MRRD+G LYMSE+DI L +P +  A+ R K+GS  ARRDV+L A K+  +  +
Sbjct:   112 MSHDYVLMRRDRGFLYMSELDIELIVPAWFMAVIRGKIGSPAARRDVMLTAAKVTADVGV 171

Query:   180 RMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSL 222
             +MG+V++AY S     EA+++LG+++  R   G VY ++R+SL
Sbjct:   172 KMGIVDSAYGSAAETVEAAIKLGEEIVQRGGDGHVYGKMRESL 214

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0008809 "carnitine racemase activity" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=IGI

GO:0009062 "fatty acid catabolic process" evidence=IMP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

DICTYBASE|DDB_G0282341 DDB_G0282341 "enoyl-CoA hydratase/isomerase family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 66/242 (27%), Positives = 115/242 (47%)

Query:     5 EKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNG 63
             E + D+F+LTL    N +E+R     +     ++   ++     S  ITTS   KF+S G
Sbjct:    18 ESNEDIFLLTL----NDNENRFNDDNLGHFHKSLDYVES-CENASCLITTSISPKFYSLG 72

Query:    64 FDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTXXXXXXXXXXXXFILALSHD 123
              DL WA   G    A+    ++F+ F  L+  ++  P+PT             + +++HD
Sbjct:    73 LDLDWALPRG----AKNFQEFVFR-FHALLQRILVFPIPTISCINGHSFAGGAMFSMAHD 127

Query:   124 YVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGL 183
             Y +M+ DKG   + E+DI + L     A+ + K+ ++   RDV+L  K+  G+EA ++ L
Sbjct:   128 YRIMKSDKGFFCLPEIDIHIPLTPGMNAILQCKITNSNIFRDVVLTGKRFGGKEAEKLQL 187

Query:   184 VE-AAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG-VLGLDIKAVFSNS 241
             V+ +  D  E+  E +  L  +   R   G +  E+ K+   +L    +G   +     S
Sbjct:   188 VDKSCTDILEKSVELAELLHTKGKDRITFGSLKEEMYKNASKELLEKTIGFASRLKLFES 247

Query:   242 KL 243
             KL
Sbjct:   248 KL 249

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

ASPGD|ASPL0000001974 AN6767 [Emericella nidulans (taxid:162425)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 66/224 (29%), Positives = 104/224 (46%)

Query:     3 TSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGS--AFITT-SHGKF 59
             T  ++G+VF++T+       E+RL       ++ A    +    P S  A IT  S  KF
Sbjct:    11 TLSRYGNVFIITM---QKPPENRLNTWYCQELIRAFRTVEKILGPDSEGAVITRGSDAKF 67

Query:    60 FSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTXXXXXXXXXXXXFILA 119
             +  G +L     + +   A          F PLV  ++D P PT               A
Sbjct:    68 WCTGLEL---DESDTNPFANS------DGFYPLVHTVLDFPFPTIALLTGHTFGGACPFA 118

Query:   120 LSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEAL 179
             L+HDY +M   +G   M  V++GL   D   +L R K+    A + +LL A +  GEEAL
Sbjct:   119 LAHDYRIMNSKRGFFSMPPVNLGLHF-DGIGSLPRLKLRPDIAAK-MLLEAHRWTGEEAL 176

Query:   180 RMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLY 223
             R G+V A  D +E + + ++ +G++ A +   G VYA +R  L+
Sbjct:   177 RDGIVHAIADPDEML-DVALEMGRKWAPKAKMG-VYAALRAELW 218

GO:0005575 "cellular_component" evidence=ND

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

DICTYBASE|DDB_G0289147 DDB_G0289147 "enoyl-CoA hydratase/isomerase family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 142 (55.0 bits), Expect = 5.6e-08, P = 5.6e-08
 Identities = 43/187 (22%), Positives = 81/187 (43%)

Query:    20 NVDEHRLGPSAIDSILSAIAQAKAEATPGSAFIT-TSHGKFFSNGFDLAWAQAAGSRTGA 78
             N +E+R  P  +  I  A+   ++         T T   K++S G DL W +  G     
Sbjct:    49 NDNENRFNPINLKYINQALDYIESIEDCCCLITTGTDESKYYSLGLDLEWVKPRG----- 103

Query:    79 RERVHYMFKSFRPLVAAMMDLPMPTXXXXXXXXXXXXFILALSHDYVVMRRDKGVLYMSE 138
             +     +      L+  ++   +PT             I +L+HDY VM   KG + ++ 
Sbjct:   104 KSSFFNLLYDLCVLLERILTFSIPTISCINGHSYAGGAIFSLAHDYRVMNDSKGFICVNA 163

Query:   139 VDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEAS 198
             +D  + LP       + K+ + +  RD +L  K+  G +A ++ LV+    +   + E S
Sbjct:   164 IDNNIPLPPGLIDTMKCKINNPSLYRDFVLMGKRYGGLDAEKLQLVDRT-SNPSTILEES 222

Query:   199 MRLGKQL 205
             ++L K++
Sbjct:   223 IKLAKEI 229

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

TIGR_CMR|CHY_2254 CHY_2254 "enoyl-CoA hydratase/isomerase family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 121 (47.7 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 53/239 (22%), Positives = 94/239 (39%)

Query:     5 EKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGF 64
             E++G V ++TL     V+   +       +   + Q K       A + T  G  F  G 
Sbjct:     8 EQNGKVGIITLNRPEAVNA--INEEMQVEMAEILLQVKNNENI-RAVVLTGAGPGFCAGG 64

Query:    65 DLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTXXXXXXXXXXXXFILALSHDY 124
             D+    +  ++T A +RV  M       +  ++++  P               +AL+ D 
Sbjct:    65 DVKRMLSNFAKTPADQRVTLMENLVHNWLTLLINMEKPVISAVHGYAVGAGLSIALATDI 124

Query:   125 VVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLV 184
             ++  R   +  ++   +GL LPD     F  +       ++++  A +   E+A  +GLV
Sbjct:   125 IIAARST-IFSLAFAQVGL-LPDLSGLFFLARTLGVHRAKELIFTADRFSAEKAYELGLV 182

Query:   185 EAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGLDIKAVFSNSKL 243
                 D +  + EA M L KQLA        YA  +K L+        LD+   F   +L
Sbjct:   183 NRVVDDDLYLDEA-MNLAKQLADGPTRAYGYA--KKLLHL----ATSLDLNTFFEYERL 234

GO:0003824 "catalytic activity" evidence=ISS

GO:0009062 "fatty acid catabolic process" evidence=ISS

TIGR_CMR|SPO_1882 SPO_1882 "enoyl-CoA hydratase/isomerase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 111 (44.1 bits), Expect = 0.00033, P = 0.00033
 Identities = 50/167 (29%), Positives = 73/167 (43%)

Query:    29 SAIDSILSA-IAQA-KAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMF 86
             +A+ S + A I  A KA A    A + T  G+ F  G DL     AGS +G  +    + 
Sbjct:    26 NALTSRMRAEITHAMKAAAREARAIVLTGAGRAFCTGQDLG---DAGS-SGKIDLERTLR 81

Query:    87 KSFRPLVAAMMDLPMPTXXXXXXXXXXXXFILALSHDYVVMRRDKGVLYMSEVDIGLTLP 146
               + P++ A+ D P+PT              LAL  D VV+  +      +   IGL +P
Sbjct:    82 DEYNPMLEAIYDCPVPTIAAVNGPAAGAGANLALCAD-VVIATESAYFLQAFARIGL-MP 139

Query:   147 DYCAALFREK-VGSATARRDVLLRAKKIKGEEALRMGLV-EAAYDSE 191
             D     F  + +G A A    L  A KI   +A   G++ EA  D+E
Sbjct:   140 DAGGTWFLPRQMGLAKAMGAALF-ADKIDARQAEAWGMIWEAVPDAE 185

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=ISS

TIGR_CMR|CPS_1601 CPS_1601 "enoyl-CoA hydratase/isomerase family protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 111 (44.1 bits), Expect = 0.00034, P = 0.00034
 Identities = 48/194 (24%), Positives = 81/194 (41%)

Query:    12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQA 71
             + T+T  +N D+H     AI   L+ I    ++    S  I  S+GK FS G DL W + 
Sbjct:    17 IATVT-LNNPDKHNAFDDAIIKQLTEIFNDISKRDDISVMILASNGKSFSAGADLGWMKR 75

Query:    72 AGSRTGARERVHYMFKSFRPLVAAMMDLPMPTXXXXXXXXXXXXFILALSHDYVVMRRDK 131
               S +   + +     +   ++ A+  LP  T              LA   D +V+   K
Sbjct:    76 MASYS-YEDNLKDA-NALAQMLKALNFLPQTTIAKIQGAAFGGAVGLASCCD-IVIASTK 132

Query:   132 GVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSE 191
                 +SEV +GL +P   +    + +G   +RR     A++   ++A  +GLV+     E
Sbjct:   133 ASFCLSEVKLGL-IPATISPYVVDTIGLKASRR-YFQTAERFFSDKAQSLGLVDEVVSPE 190

Query:   192 ERVAEASMRLGKQL 205
                 E +  + K L
Sbjct:   191 LLTDEVNSMVAKLL 204

GO:0003824 "catalytic activity" evidence=ISS

GO:0009062 "fatty acid catabolic process" evidence=ISS

RGD|1589147 Echdc3 "enoyl Coenzyme A hydratase domain containing 3" [Rattus norvegicus (taxid:10116)]

 Score = 112 (44.5 bits), Expect = 0.00035, P = 0.00035
 Identities = 57/222 (25%), Positives = 93/222 (41%)

Query:    26 LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHY- 84
             L  + + S+ S I   +AE+      I ++ G  FS+G DL         TGA+ R ++ 
Sbjct:    70 LSLAMLKSLRSDILH-EAESEDLKVIIISAEGPVFSSGHDLK------ELTGAQGRDYHT 122

Query:    85 -MFKSFRPLVAAMMDLPMPTXXXXXXXXXXXXFILALSHDYVVMRRDKGVLYMSEVDIGL 143
              +F++   ++  + + P+P               L  S D + +  DK       V++GL
Sbjct:   123 EVFQTCSEVMMLIRNHPVPIVAMVNGLATAAGCQLVASCD-IAVASDKSSFATPGVNVGL 181

Query:   144 TLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGK 203
                    AL R  V    A  ++L   + I  +EALR GL+      EE++ E + R+ K
Sbjct:   182 FCSTPAVALGRA-VPRKVAL-EMLFTGEPISAQEALRHGLISKVVP-EEQLEEEATRIAK 238

Query:   204 QLAG--RKCTGEVYAEIRKSLYPDLCGVLGLDIKAVFSNSKL 243
             ++A   R       A   K L  DL     L  +A+  N  L
Sbjct:   239 KIASLSRSVVALGKATFYKQLPQDLSTAYFLASQAMVDNLTL 280

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	243
PLN02267	239	PLN02267, PLN02267, enoyl-CoA hydratase/isomerase	1e-133
cd06558	195	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme	2e-38
COG1024	257	COG1024, CaiD, Enoyl-CoA hydratase/carnithine race	1e-25
pfam00378	245	pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami	6e-20
PRK06213	229	PRK06213, PRK06213, enoyl-CoA hydratase; Provision	4e-13
PRK05981	266	PRK05981, PRK05981, enoyl-CoA hydratase; Provision	2e-12
PRK08140	262	PRK08140, PRK08140, enoyl-CoA hydratase; Provision	4e-12
PRK07511	260	PRK07511, PRK07511, enoyl-CoA hydratase; Provision	1e-11
PRK07659	260	PRK07659, PRK07659, enoyl-CoA hydratase; Provision	1e-11
PRK07327	268	PRK07327, PRK07327, enoyl-CoA hydratase; Provision	2e-11
PRK06688	259	PRK06688, PRK06688, enoyl-CoA hydratase; Provision	5e-11
PRK06495	257	PRK06495, PRK06495, enoyl-CoA hydratase; Provision	7e-11
TIGR02280	256	TIGR02280, PaaB1, phenylacetate degradation probab	1e-09
PRK08272	302	PRK08272, PRK08272, enoyl-CoA hydratase; Provision	4e-09
PRK07110	249	PRK07110, PRK07110, polyketide biosynthesis enoyl-	5e-09
PRK09245	266	PRK09245, PRK09245, enoyl-CoA hydratase; Provision	1e-08
PRK05870	249	PRK05870, PRK05870, enoyl-CoA hydratase; Provision	3e-08
TIGR03189	251	TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecar	4e-08
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	1e-07
PRK03580	261	PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr	1e-07
PRK07468	262	PRK07468, PRK07468, enoyl-CoA hydratase; Provision	3e-07
PRK06142	272	PRK06142, PRK06142, enoyl-CoA hydratase; Provision	8e-07
PRK06494	259	PRK06494, PRK06494, enoyl-CoA hydratase; Provision	9e-07
TIGR02441	737	TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c	9e-07
PRK07827	260	PRK07827, PRK07827, enoyl-CoA hydratase; Provision	1e-06
PRK05674	265	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr	1e-06
TIGR03210	256	TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hyd	1e-06
PRK08258	277	PRK08258, PRK08258, enoyl-CoA hydratase; Provision	2e-06
TIGR02440	699	TIGR02440, FadJ, fatty oxidation complex, alpha su	2e-06
PRK11730	715	PRK11730, fadB, multifunctional fatty acid oxidati	3e-06
PRK06210	272	PRK06210, PRK06210, enoyl-CoA hydratase; Provision	3e-06
PRK07854	243	PRK07854, PRK07854, enoyl-CoA hydratase; Provision	3e-06
PRK05995	262	PRK05995, PRK05995, enoyl-CoA hydratase; Provision	4e-06
PRK07658	257	PRK07658, PRK07658, enoyl-CoA hydratase; Provision	4e-06
PLN03214	278	PLN03214, PLN03214, probable enoyl-CoA hydratase/i	5e-06
PRK09076	258	PRK09076, PRK09076, enoyl-CoA hydratase; Provision	7e-06
TIGR01929	259	TIGR01929, menB, naphthoate synthase (dihydroxynap	2e-05
PRK11154	708	PRK11154, fadJ, multifunctional fatty acid oxidati	3e-05
PRK06072	248	PRK06072, PRK06072, enoyl-CoA hydratase; Provision	3e-05
PRK05869	222	PRK05869, PRK05869, enoyl-CoA hydratase; Validated	6e-05
PRK08138	261	PRK08138, PRK08138, enoyl-CoA hydratase; Provision	7e-05
PRK05864	276	PRK05864, PRK05864, enoyl-CoA hydratase; Provision	1e-04
PRK06144	262	PRK06144, PRK06144, enoyl-CoA hydratase; Provision	1e-04
PRK05809	260	PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata	2e-04
PRK07509	262	PRK07509, PRK07509, enoyl-CoA hydratase; Provision	2e-04
PRK08321	302	PRK08321, PRK08321, naphthoate synthase; Validated	2e-04
PLN02664	275	PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d	3e-04
PLN02888	265	PLN02888, PLN02888, enoyl-CoA hydratase	4e-04
PLN02600	251	PLN02600, PLN02600, enoyl-CoA hydratase	6e-04
PRK06127	269	PRK06127, PRK06127, enoyl-CoA hydratase; Provision	6e-04
PRK06143	256	PRK06143, PRK06143, enoyl-CoA hydratase; Provision	7e-04
PRK07260	255	PRK07260, PRK07260, enoyl-CoA hydratase; Provision	7e-04
PRK07657	260	PRK07657, PRK07657, enoyl-CoA hydratase; Provision	9e-04
PRK08139	266	PRK08139, PRK08139, enoyl-CoA hydratase; Validated	0.001
PRK06190	258	PRK06190, PRK06190, enoyl-CoA hydratase; Provision	0.001
cd07021	178	cd07021, Clp_protease_NfeD_like, Nodulation format	0.001
PRK08252	254	PRK08252, PRK08252, enoyl-CoA hydratase; Provision	0.003

>gnl|CDD|215151 PLN02267, PLN02267, enoyl-CoA hydratase/isomerase family protein

 Score =  374 bits (961), Expect = e-133
 Identities = 155/233 (66%), Positives = 184/233 (78%), Gaps = 6/233 (2%)

Query: 1   MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFF 60
           MCT EK G++F+LTLTG     EHRL P+ IDSI SA+ Q K++ATPGS  ITT+ GKFF
Sbjct: 1   MCTLEKRGNLFILTLTGD---GEHRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFF 57

Query: 61  SNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILAL 120
           SNGFDLAWAQAAGS   A  R+H M    RPLVA ++ LPMPT+AAV GHA+AAGFILAL
Sbjct: 58  SNGFDLAWAQAAGS---APSRLHLMVAKLRPLVADLISLPMPTIAAVTGHASAAGFILAL 114

Query: 121 SHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALR 180
           SHDYV+MR+D+GVLYMSEVDIGL LPDY  AL R K+GS  ARRDVLLRA K+  EEA+ 
Sbjct: 115 SHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRDVLLRAAKLTAEEAVE 174

Query: 181 MGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGLD 233
           MG+V++A+DS E   EA++RLG++LA RK  GEVYA IRKSL P++CG LGLD
Sbjct: 175 MGIVDSAHDSAEETVEAAVRLGEELAARKWNGEVYASIRKSLLPEVCGKLGLD 227

Length = 239

>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

 Score =  132 bits (334), Expect = 2e-38
 Identities = 60/193 (31%), Positives = 88/193 (45%), Gaps = 8/193 (4%)

Query: 5   EKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGF 64
           E+ G V  +TL        + L    +D + +A+ +A+A+       + T  GK F  G 
Sbjct: 4   ERDGGVATITLNRPEKR--NALSLEMLDELAAALDEAEADPDVR-VVVLTGAGKAFCAGA 60

Query: 65  DLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDY 124
           DL    A    + A E      +  + L+ A++ LP P +AAVNG A   G  LAL+ D 
Sbjct: 61  DLKELAAL---SDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDI 117

Query: 125 VVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLV 184
            +   D     + EV +GL             VG A AR  +LL  ++I  EEAL +GLV
Sbjct: 118 RIAAED-AKFGLPEVKLGLVPGGGGTQRLPRLVGPARARE-LLLTGRRISAEEALELGLV 175

Query: 185 EAAYDSEERVAEA 197
           +     EE +A A
Sbjct: 176 DEVVPDEELLAAA 188

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195

>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

 Score =  100 bits (251), Expect = 1e-25
 Identities = 58/205 (28%), Positives = 89/205 (43%), Gaps = 13/205 (6%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR--LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSN 62
           E+   + V+TL    N  E    L    +D +  A+ +A+A+       + T  GK FS 
Sbjct: 10  EREDGIAVITL----NRPEKLNALNLEMLDELAEALDEAEADPDVRVV-VLTGAGKAFSA 64

Query: 63  GFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSH 122
           G DL    +      A   +       R    A+ DLP P +AAVNG+A   G  LAL+ 
Sbjct: 65  GADLKELLSPEDGNAAENLMQPGQDLLR----ALADLPKPVIAAVNGYALGGGLELALAC 120

Query: 123 DYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMG 182
           D  +   D     + EV++GL   D         +G   A+  +L   + I   EAL +G
Sbjct: 121 DIRIAAEDA-KFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLT-GEPISAAEALELG 178

Query: 183 LVEAAYDSEERVAEASMRLGKQLAG 207
           LV+      E + E ++ L ++LA 
Sbjct: 179 LVDEVVPDAEELLERALELARRLAA 203

Length = 257

>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family

 Score = 85.0 bits (211), Expect = 6e-20
 Identities = 49/177 (27%), Positives = 89/177 (50%), Gaps = 11/177 (6%)

Query: 31  IDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFR 90
           +  ++ A+ + + + +   A + T     FS G D+   +   +   A++         +
Sbjct: 27  LTELIQALEKLEQDPSVK-AIVLTGGPGAFSAGADI---KEMAAEPLAQQAQFS--LEAQ 80

Query: 91  PLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCA 150
            L + + DLP P +AAVNG+A   G  LAL+ DY +   D     + EV +G+ +P    
Sbjct: 81  DLWSRLEDLPKPVIAAVNGYALGGGLELALACDYRIA-ADNAKFGLPEVKLGI-IPGAGG 138

Query: 151 ALFREK-VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLA 206
                + +G + A  ++LL  ++I+ +EAL+MGLV+     E+ V EA + L ++LA
Sbjct: 139 TQRLPRIIGVSAA-LEMLLTGRRIRAQEALKMGLVDKVVPEEQLVEEA-IELAQRLA 193

This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245

>gnl|CDD|235744 PRK06213, PRK06213, enoyl-CoA hydratase; Provisional

 Score = 66.2 bits (162), Expect = 4e-13
 Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 16/201 (7%)

Query: 8   GDVFVLTLT-GSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDL 66
             V  +TL  G  N     L P+ ID++ +A+ QA+ +    +  + T     FS GFDL
Sbjct: 11  DGVATITLDDGKVNA----LSPAMIDALNAALDQAEDDR---AVVVITGQPGIFSGGFDL 63

Query: 67  AWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVV 126
               +     GA+  +  +  +   L   ++  P P + A  GHA A G  L LS DY +
Sbjct: 64  KVMTS-----GAQAAIA-LLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRI 117

Query: 127 MRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEA 186
                  + ++EV IG+T+P     L R+++  +  +R V+  A+    EEA+  G ++ 
Sbjct: 118 GVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQRAVIN-AEMFDPEEAVAAGFLDE 176

Query: 187 AYDSEERVAEASMRLGKQLAG 207
               E+ +   +    ++LAG
Sbjct: 177 VVPPEQ-LLARAQAAARELAG 196

Length = 229

>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 65/213 (30%), Positives = 93/213 (43%), Gaps = 22/213 (10%)

Query: 3   TSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSI------LSAIAQAKAEATPGSAFITTSH 56
           T +  G V +LTL          +   +ID +      L AI   KAE       + T  
Sbjct: 7   TLDFDGGVAILTLD-----HPEVMNAVSIDMLGGLAEALDAIEDGKAEV---RCLVLTGA 58

Query: 57  GKFFSNGFDLAWAQAAGSRTGARERVHYMFKS-FRPLVAAMMDLPMPTVAAVNGHAAAAG 115
           G+ F  G +L    + G  + +        ++ + P +  + +LP P V AVNG AA  G
Sbjct: 59  GRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVG 118

Query: 116 FILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAA--LFREKVGSATARRDVLLRAKKI 173
              AL  D ++  R    L  +   IGL +PD   +  L    VG A A    LL  +K+
Sbjct: 119 MSFALMGDLILCARSAYFL-QAFRRIGL-VPD-GGSTWLLPRLVGKARAMELSLL-GEKL 174

Query: 174 KGEEALRMGLVEAAYDSEERVAEASMRLGKQLA 206
             E AL+ GLV    D  E +AEA M+L  +LA
Sbjct: 175 PAETALQWGLVNRVVDDAELMAEA-MKLAHELA 206

Length = 266

>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional

 Score = 63.8 bits (156), Expect = 4e-12
 Identities = 67/228 (29%), Positives = 97/228 (42%), Gaps = 26/228 (11%)

Query: 4   SEKHGDVFVLTLT-----GSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGK 58
                 V  LTL       S   + HR        +  A+ Q + +     A + T  G+
Sbjct: 8   LAIEAGVATLTLNRPDKLNSFTREMHR-------ELREALDQVEDDGA--RALLLTGAGR 58

Query: 59  FFSNGFDLA--WAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGF 116
            F  G DLA       G+     E +      + PLV  +  LP+P +AAVNG AA AG 
Sbjct: 59  GFCAGQDLADRDVTPGGAMPDLGESIE---TFYNPLVRRLRALPLPVIAAVNGVAAGAGA 115

Query: 117 ILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREK-VGSATARRDVLLRAKKIKG 175
            LAL+ D V+  R    +  + V IGL +PD     F  + VG A A    LL  +K+  
Sbjct: 116 NLALACDIVLAARSASFI-QAFVKIGL-VPDSGGTWFLPRLVGMARALGLALL-GEKLSA 172

Query: 176 EEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLY 223
           E+A + GL+    D      EA  +L   LA +   G   A I++++ 
Sbjct: 173 EQAEQWGLIWRVVDDAALADEA-QQLAAHLATQPTRG--LALIKQAMN 217

Length = 262

>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 62/207 (29%), Positives = 90/207 (43%), Gaps = 12/207 (5%)

Query: 4   SEKHGDVFVLTLTGSSNVDEHR--LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFS 61
           S + G   VLTL   SN    R  L P    + + A+  A+ + +   A + T  G FF 
Sbjct: 7   SRREGSTLVLTL---SNP-GARNALHPDMYAAGIEALNTAERDPSIR-AVVLTGAGGFFC 61

Query: 62  NGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALS 121
            G +L   +   +R                 + A+   P P +AAV G AA AGF LAL+
Sbjct: 62  AGGNLN--RLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALA 119

Query: 122 HDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRM 181
            D +V  RD     M+ V +GLT PD   + F  +        ++LL  K I  E    +
Sbjct: 120 CDLLVAARD-AKFVMAYVKVGLT-PDGGGSWFLARALPRQLATELLLEGKPISAERLHAL 177

Query: 182 GLVEAAYDSEERVAEASMRLGKQLAGR 208
           G+V    +  + +AEA + L  QLA  
Sbjct: 178 GVVNRLAEPGQALAEA-LALADQLAAG 203

Length = 260

>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional

 Score = 62.4 bits (152), Expect = 1e-11
 Identities = 54/213 (25%), Positives = 97/213 (45%), Gaps = 20/213 (9%)

Query: 32  DSILSAIAQA--KAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSF 89
           + +L  + QA  +   +     +   +G+ FS G D+    ++        +   +  + 
Sbjct: 32  EPMLKELLQALKEVAESSAHIVVLRGNGRGFSAGGDIKMMLSSNDE----SKFDGVMNTI 87

Query: 90  RPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC 149
             +V  +  +P  T++A++G AA  G  +AL+ DYV+       L M+ + IGL +PD  
Sbjct: 88  SEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADIS-AKLAMNFIGIGL-IPDGG 145

Query: 150 AALFREK-VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEA-----SMRLGK 203
              F +K VG   A++ ++   KK+   EAL +GL++     +     A     S  L K
Sbjct: 146 GHFFLQKRVGENKAKQ-IIWEGKKLSATEALDLGLIDEVIGGD--FQTAAKQKISEWLQK 202

Query: 204 QLAGRKCTGEVYAEIRKSLYPDLCGVLGLDIKA 236
            L     T ++Y E+ +S    L  VL L+ +A
Sbjct: 203 PLKAMIETKQIYCELNRS---QLEQVLQLEKRA 232

Length = 260

>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 6/158 (3%)

Query: 49  SAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVN 108
              +    GK FS G DLA  +        R RV   ++  R LV  +++   P V+A++
Sbjct: 58  RVVLIRGEGKAFSAGGDLALVEEMADDFEVRARV---WREARDLVYNVINCDKPIVSAIH 114

Query: 109 GHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLL 168
           G A  AG + AL  D  +  +D  ++      +G+   D+ A ++    G A A+  +LL
Sbjct: 115 GPAVGAGLVAALLADISIAAKDARII-DGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLL 173

Query: 169 RAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLA 206
             + + GEEA R+GLV  A D +E + +A + + ++LA
Sbjct: 174 -CEPVSGEEAERIGLVSLAVDDDELLPKA-LEVAERLA 209

Length = 268

>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional

 Score = 60.7 bits (148), Expect = 5e-11
 Identities = 46/146 (31%), Positives = 65/146 (44%), Gaps = 12/146 (8%)

Query: 54  TSHGKFFSNGFDL-AWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAA 112
           T  G+ FS G D+  + +A          V+         + A+  LP P VAAVNG A 
Sbjct: 56  TGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRF-------LRAIAALPKPVVAAVNGPAV 108

Query: 113 AAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREK-VGSATARRDVLLRAK 171
             G  LAL+ D V    +     +    +GL  PD   +    + +G A A   +LL  +
Sbjct: 109 GVGVSLALACDLVYA-SESAKFSLPFAKLGL-CPDAGGSALLPRLIGRARAAE-MLLLGE 165

Query: 172 KIKGEEALRMGLVEAAYDSEERVAEA 197
            +  EEALR+GLV     + E  AEA
Sbjct: 166 PLSAEEALRIGLVNRVVPAAELDAEA 191

Length = 259

>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional

 Score = 60.1 bits (146), Expect = 7e-11
 Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 9/157 (5%)

Query: 50  AFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNG 109
             + T  GK F  G DL          G   R H   +  R    A+ +   P +AAVNG
Sbjct: 50  VVVLTGAGKVFCAGADLKGRPDVIKGPGDL-RAHN--RRTRECFHAIRECAKPVIAAVNG 106

Query: 110 HAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLR 169
            A  AG  L  S D +++  +  V  + E+D+GL              G +  RR ++L 
Sbjct: 107 PALGAGLGLVASCD-IIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLTRR-MMLT 161

Query: 170 AKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLA 206
             ++   E  R G++EA    EE + EA M + +++A
Sbjct: 162 GYRVPAAELYRRGVIEACLPPEELMPEA-MEIAREIA 197

Length = 257

>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB

 Score = 56.8 bits (137), Expect = 1e-09
 Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 6/158 (3%)

Query: 42  KAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPM 101
           + E     A + T  G+ F  G DL+  +   +  GA +    +   + PLV  +  LP+
Sbjct: 37  RVERDDARALMLTGAGRGFCAGQDLS--ERNPTPGGAPDLGRTIETFYNPLVRRLRALPL 94

Query: 102 PTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREK-VGSA 160
           P V AVNG AA AG  LAL+ D V+       +  +   IGL +PD        + VG A
Sbjct: 95  PVVCAVNGVAAGAGANLALACDIVLAAESARFI-QAFAKIGL-IPDSGGTWSLPRLVGRA 152

Query: 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEAS 198
            A    +L  +K+    A   GL+    D    + EA 
Sbjct: 153 RAMGLAML-GEKLDARTAASWGLIWQVVDDAALMDEAQ 189

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256

>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 47/200 (23%), Positives = 76/200 (38%), Gaps = 29/200 (14%)

Query: 31  IDSILSAIAQA--KAEATPG-SAFITTSHGKFFSNGFDL-AWAQAAGSRTGARERVHY-- 84
                  +  A  +A+  PG    + +  GK F  G+DL A+A+ + S  G         
Sbjct: 35  TADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQ 94

Query: 85  -----------------MFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVM 127
                            M   F     ++     PTVA V+G+  A G  +AL  D V+ 
Sbjct: 95  AVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIA 154

Query: 128 RRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAA 187
             D  + Y      G+        ++  ++G   A+R +L     I G +A   GL   A
Sbjct: 155 ADDAKIGYPPTRVWGVP----ATGMWAYRLGPQRAKR-LLFTGDCITGAQAAEWGLAVEA 209

Query: 188 YDSEERVAEASMRLGKQLAG 207
              EE + E + RL +++A 
Sbjct: 210 VPPEE-LDERTERLVERIAA 228

Length = 302

>gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 54.6 bits (132), Expect = 5e-09
 Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 5/117 (4%)

Query: 91  PLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCA 150
            L +  ++ P+P +AA+ GHA   G +L L  D VV+ R+  V   + +  G T P   A
Sbjct: 85  NLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRES-VYTANFMKYGFT-PGMGA 142

Query: 151 -ALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLA 206
            A+  EK+G A   +++LL A+  +G E  + G+        E V E ++ L + LA
Sbjct: 143 TAILPEKLGLALG-QEMLLTARYYRGAELKKRGVPFPVLPRAE-VLEKALELARSLA 197

Length = 249

>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 64/222 (28%), Positives = 93/222 (41%), Gaps = 31/222 (13%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR---LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFS 61
           E+ G +  LT+    N  E R       A+D++++A A   A+ +   A I T  G  FS
Sbjct: 8   ERDGHIVTLTM----NRPETRNALSDNDAVDALVAACAAINADRSV-RAVILTGAGTAFS 62

Query: 62  NG---FDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFIL 118
           +G    D+     A   + A  R  Y     + +  A+ +L +P +AAVNG A  AG  L
Sbjct: 63  SGGNVKDMRARVGAFGGSPADIRQGYR-HGIQRIPLALYNLEVPVIAAVNGPAIGAGCDL 121

Query: 119 ALSHDYVVMR--RDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGE 176
           A   D   +R   +      S V +GL   D  A L    +G A A  ++      I   
Sbjct: 122 ACMCD---IRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARA-AEMAFTGDAIDAA 177

Query: 177 EALRMGLV----------EAAYDSEERVAE---ASMRLGKQL 205
            AL  GLV           AA    ER+A     ++RL K+L
Sbjct: 178 TALEWGLVSRVVPADQLLPAARALAERIAANPPHALRLTKRL 219

Length = 266

>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 57/172 (33%), Positives = 77/172 (44%), Gaps = 13/172 (7%)

Query: 30  AIDSILSA---IAQAKAEATPGS-AFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYM 85
           A+ + +SA    A A AEA P   A + T  GK F  G DL    AA  R  A + +  +
Sbjct: 26  AVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGR-PAEDGLRRI 84

Query: 86  FKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTL 145
           +  F     A+   P+PT+AAVNG A  AG  LAL+ D V +   K +       +GL  
Sbjct: 85  YDGF----LAVASCPLPTIAAVNGAAVGAGLNLALAAD-VRIAGPKALFDARFQKLGLHP 139

Query: 146 PDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEA 197
                 + +  VG   AR   LL   +   E A+R GL     D  + VA A
Sbjct: 140 GGGATWMLQRAVGPQVARA-ALLFGMRFDAEAAVRHGLALMVAD--DPVAAA 188

Length = 249

>gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA hydratase

 Score = 52.3 bits (125), Expect = 4e-08
 Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 14/168 (8%)

Query: 33  SILSAIAQAKAEATPGSAF---ITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSF 89
           ++++A++ A  E    SA    +  + G  FS G        A       ++   M  S 
Sbjct: 27  AMIAALSAALGEHLEDSALRAVLLDAEGPHFSFG--------ASVAEHMPDQCAAMLASL 78

Query: 90  RPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC 149
             LV AM+D P+P + AV G     G  +A + + +    D   L   E+ +G+  P   
Sbjct: 79  HKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPD-AKLGQPEIVLGVFAPA-A 136

Query: 150 AALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEA 197
           + L  E++G   A  D+L   + I G E  R+GL  A  +  E  A A
Sbjct: 137 SCLLPERMGRVAA-EDLLYSGRSIDGAEGARIGLANAVAEDPENAALA 183

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. Length = 251

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 2/111 (1%)

Query: 98  DLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKV 157
           DLP+PTVAA+NG A   G    L+ D+ +      +  + E  +G+ +P +   +   +V
Sbjct: 100 DLPVPTVAAINGIALGGGCECVLATDFRIADDTAKI-GLPETKLGI-MPGFGGTVRLPRV 157

Query: 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
             A    + +   K+ + E+AL++G V+A   +++  A A   L   + G+
Sbjct: 158 IGADNALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGK 208

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 9/157 (5%)

Query: 50  AFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNG 109
           A IT +  KFFS G+DL  A A G    A     +    F  L   + DL  P +AAVNG
Sbjct: 50  AIITGAGEKFFSAGWDLK-AAAEGEAPDA----DFGPGGFAGL-TEIFDLDKPVIAAVNG 103

Query: 110 HAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLR 169
           +A   GF LAL+ D++V   D     + E  +G  +PD    L   K        ++++ 
Sbjct: 104 YAFGGGFELALAADFIVC-ADNASFALPEAKLG-IVPDSGGVLRLPKRLPPAIANEMVMT 161

Query: 170 AKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLA 206
            +++  EEALR G+V      +  + + +  L +QL 
Sbjct: 162 GRRMDAEEALRWGIVNRVV-PQAELMDRARELAQQLV 197

Length = 261

>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 49/166 (29%), Positives = 70/166 (42%), Gaps = 21/166 (12%)

Query: 35  LSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQA---AGSRTGARE--RVHYMFKSF 89
           L+  A+  A        + T  GK F  G DL W +A   A   T   E  R+  M K  
Sbjct: 37  LTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLK-- 94

Query: 90  RPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGL---TLP 146
                A+ DLP P +  + G A   G  L    D V +        ++E  +GL   T+ 
Sbjct: 95  -----ALNDLPKPLIGRIQGQAFGGGVGLISVCD-VAIAVSGARFGLTETRLGLIPATIS 148

Query: 147 DYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEE 192
            Y  A    ++G A ARR V + A+    EEA+R+GL+     +E 
Sbjct: 149 PYVVA----RMGEANARR-VFMSARLFDAEEAVRLGLLSRVVPAER 189

Length = 262

>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional

 Score = 48.4 bits (116), Expect = 8e-07
 Identities = 47/184 (25%), Positives = 69/184 (37%), Gaps = 33/184 (17%)

Query: 43  AEATPG-SAFITTSHGKFFSNGFDLAW----AQAAGSRTGARER--VHYMFKSFRPLVAA 95
            +A P   A + +  GK FS G DL          G    AR R  +       +  + A
Sbjct: 45  LDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINA 104

Query: 96  MMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMS--EVDIGLTLPDYCAALF 153
           + D   P +AAV G     G  L  + D   MR        S  EVD+G+          
Sbjct: 105 VADCRKPVIAAVQGWCIGGGVDLISACD---MRYASADAKFSVREVDLGMV--------- 152

Query: 154 REKVGSATAR----------RDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGK 203
              VGS   R          R++ L  + I   EA ++GLV   YD  + +  A+    +
Sbjct: 153 -ADVGS-LQRLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAR 210

Query: 204 QLAG 207
           ++A 
Sbjct: 211 EIAA 214

Length = 272

>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 46/141 (32%), Positives = 64/141 (45%), Gaps = 22/141 (15%)

Query: 50  AFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNG 109
           A +T +  K FS G DL   QAAG + G  E        F  L  +  DL  P +AAVNG
Sbjct: 52  AIVTGAGDKAFSAGNDLKE-QAAGGKRGWPE------SGFGGL-TSRFDLDKPIIAAVNG 103

Query: 110 HAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAA----LFR--EKVGSATAR 163
            A   GF LAL+ D +V   +     + E  +GL      AA    L R   ++G   A 
Sbjct: 104 VAMGGGFELALACDLIVA-AENATFALPEPRVGL------AALAGGLHRLPRQIGLKRA- 155

Query: 164 RDVLLRAKKIKGEEALRMGLV 184
             ++L  +++   E L +G V
Sbjct: 156 MGMILTGRRVTAREGLELGFV 176

Length = 259

>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial

 Score = 49.1 bits (117), Expect = 9e-07
 Identities = 53/225 (23%), Positives = 87/225 (38%), Gaps = 33/225 (14%)

Query: 5   EKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGF 64
           E  GDV V+ +  S N   + L           + +        SA + +     F  G 
Sbjct: 18  EVKGDVAVVKID-SPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGA 76

Query: 65  DLAWAQAAGSRT-------GARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFI 117
           D+    A  +           +E    + KS             P VAA++G     G  
Sbjct: 77  DIQMIAACKTAQEVTQLSQEGQEMFERIEKS-----------QKPIVAAISGSCLGGGLE 125

Query: 118 LALSHDYVVMRRD-KGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGE 176
           LAL+  Y +  +D K +L + EV +GL LP         K+    A  D++L  KKI+ +
Sbjct: 126 LALACHYRIATKDRKTLLGLPEVMLGL-LPGAGGTQRLPKLTGVPAALDMMLTGKKIRAD 184

Query: 177 EALRMGLVE------------AAYDSEERVAEASMRLGKQLAGRK 209
            A +MG+V+            A  ++ E + E +++  + LA  K
Sbjct: 185 RAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGK 229

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737

>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 53/193 (27%), Positives = 81/193 (41%), Gaps = 9/193 (4%)

Query: 5   EKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGF 64
              G V  LTL    N   + L    +  +   +  A A+     A + T  G  F  G 
Sbjct: 11  AVDGGVATLTLDSPHN--RNALSARLVAQLHDGLRAAAADPAV-RAVVLTHTGGTFCAGA 67

Query: 65  DLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDY 124
           DL+  +A G      +      +    L+ A+++LP P +AA++GH  A GF L  + D 
Sbjct: 68  DLS--EAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDI 125

Query: 125 VVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLV 184
           VV   +     ++E  IG+  P   +     ++    A R   L  +K    EA R+GLV
Sbjct: 126 VVAGPE-STFALTEARIGVA-PAIISLTLLPRLSPRAAAR-YYLTGEKFGAAEAARIGLV 182

Query: 185 -EAAYDSEERVAE 196
             AA D +  VA 
Sbjct: 183 TAAADDVDAAVAA 195

Length = 260

>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 18/168 (10%)

Query: 31  IDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAA------GSRTGARERVHY 84
           I  ++ A+ Q +++A+     +    G+ FS G DLAW Q +       +   ARE    
Sbjct: 35  IRELILALDQVQSDASL-RFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAEL 93

Query: 85  MFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLT 144
           M+  +R        L +PT+A V G A      L    D  +   D     +SEV IGL 
Sbjct: 94  MYNLYR--------LKIPTLAVVQGAAFGGALGLISCCDMAIGADD-AQFCLSEVRIGLA 144

Query: 145 LPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEE 192
            P   +    + +G   ARR   L A++  G  A  +GL+  +Y + E
Sbjct: 145 -PAVISPFVVKAIGERAARR-YALTAERFDGRRARELGLLAESYPAAE 190

Length = 265

>gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 41/165 (24%), Positives = 66/165 (40%), Gaps = 8/165 (4%)

Query: 32  DSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRP 91
           D ++ A+  A  +   G   +  +  K F  G D        +  G  +    +      
Sbjct: 32  DELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGD------QSTHDGGYDGRGTIGLPMEE 85

Query: 92  LVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAA 151
           L +A+ D+P P +A V G+A   G +L    D  +   +K         +G   P Y  A
Sbjct: 86  LHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIA-SEKAQFGQVGPKVGSVDPGYGTA 144

Query: 152 LFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAE 196
           L    VG   A R++    ++   +EAL MGLV A    ++  AE
Sbjct: 145 LLARVVGEKKA-REIWYLCRRYTAQEALAMGLVNAVVPHDQLDAE 188

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. Length = 256

>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 39/117 (33%), Positives = 53/117 (45%), Gaps = 6/117 (5%)

Query: 92  LVAAMMDLPMPTVAAVNGHAAAAGFILALSHDY-VVMRRDKGVLYMSEVDIGLTLPDY-C 149
           LV AM   P P +AAV+G  A AG ILA++ D  +     K     + V  GL   D   
Sbjct: 105 LVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRV--GLAGADMGA 162

Query: 150 AALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLA 206
            AL    +G   A   +L   + +  EE  R G      + EE +AEA   L ++LA
Sbjct: 163 CALLPRIIGQGRASE-LLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQ-ALARRLA 217

Length = 277

>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 2/95 (2%)

Query: 92  LVAAMMDLPMPTVAAVNGHAAAAGFILALS-HDYVVMRRDKGVLYMSEVDIGLTLPDYCA 150
           L A +  LP+P VAA++G     G  LAL+ H  V    DK VL + EV +GL       
Sbjct: 88  LFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGT 147

Query: 151 ALFREKVGSATARRDVLLRAKKIKGEEALRMGLVE 185
                 +G +TA  D++L  K+++ ++AL++GLV+
Sbjct: 148 QRLPRLIGVSTAL-DMILTGKQLRAKQALKLGLVD 181

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699

>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 6/113 (5%)

Query: 98  DLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDY--CAALFRE 155
           DLP+PTVAA+NG+A   G    L+ DY V       + + E  +G+ +P +     L R 
Sbjct: 100 DLPVPTVAAINGYALGGGCECVLATDYRVA-SPDARIGLPETKLGI-MPGFGGTVRLPR- 156

Query: 156 KVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
            +G+  A  + +   K ++ E+AL++G V+A    E+    A   L + +AG+
Sbjct: 157 LIGADNA-LEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGK 208

Length = 715

>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 55/196 (28%), Positives = 76/196 (38%), Gaps = 22/196 (11%)

Query: 42  KAEATPG-SAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLV------- 93
           +AEA P     + T  G+ F  G D+   Q      G R+         RP V       
Sbjct: 44  RAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRD------TDVRPFVGNRRPDY 97

Query: 94  ----AAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC 149
                 +  L  P +AA+NG  A  G   AL  D V    D      +    GL      
Sbjct: 98  QTRYHFLTALRKPVIAAINGACAGIGLTHALMCD-VRFAADGAKFTTAFARRGLIAEHGI 156

Query: 150 AALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRK 209
           + +    VG A A  D+LL A+    EEALR+GLV      +E +    +   + LA R 
Sbjct: 157 SWILPRLVGHANAL-DLLLSARTFYAEEALRLGLVNRVVPPDELMERT-LAYAEDLA-RN 213

Query: 210 CTGEVYAEIRKSLYPD 225
            +    A I++ LY D
Sbjct: 214 VSPASMAVIKRQLYED 229

Length = 272

>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 46/180 (25%), Positives = 74/180 (41%), Gaps = 22/180 (12%)

Query: 8   GDVFVLTLTGSSNVDEHRLGPSAIDS-ILSAIAQA--KAEATPGSAFITTSHGKFFSNGF 64
           G V  + L       E R   +A+++ +   + +A  KA      A + T  G  F  G 
Sbjct: 8   GQVLTIEL----QRPERR---NALNAELCEELREAVRKAVDESARAIVLTGQGTVFCAGA 60

Query: 65  DLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDY 124
           DL+    A     A   + +          A+   P+P +AA+NG A  AG  LA++ D 
Sbjct: 61  DLSGDVYADDFPDALIEMLH----------AIDAAPVPVIAAINGPAIGAGLQLAMACDL 110

Query: 125 VVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLV 184
            V+   +          G+ L ++        VG   A R +LL A+K+  E+AL  G+ 
Sbjct: 111 RVV-APEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRA-RAMLLGAEKLTAEQALATGMA 168

Length = 243

>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 56/202 (27%), Positives = 83/202 (41%), Gaps = 15/202 (7%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR--LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSN 62
           E+ G V  +TL    N  + R     + I  + +A     A+ +   A +    GK F  
Sbjct: 9   EQRGQVATVTL----NRPDVRNAFNETVIAELTAAFRALDADDSV-RAVVLAGAGKAFCA 63

Query: 63  GFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSH 122
           G DL W +     +    R          ++ A+   P P +A V+G A A G  L  + 
Sbjct: 64  GADLNWMKKMAGYSDDENRADAR--RLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAAC 121

Query: 123 DYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMG 182
           D  V   D  V  +SEV +GL +P   +      +G   ARR  L  A++    EALR+G
Sbjct: 122 DIAVA-ADHAVFCLSEVRLGL-IPATISPYVIRAMGERAARRYFLT-AERFDAAEALRLG 178

Query: 183 LVEAAYDSEE---RVAEASMRL 201
           LV     +E    +V E    L
Sbjct: 179 LVHEVVPAEALDAKVDELLAAL 200

Length = 262

>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 21/118 (17%)

Query: 100 PMPTVAAVNGHAAAAGFILALS-HDYVVMRRDKGVLYMSEVDIGLT--------LPDYCA 150
             P +AA++G A   G  LA+S H        K  L + E+++GL         LP Y  
Sbjct: 94  SKPVIAAIHGAALGGGLELAMSCHIRFATESAK--LGLPELNLGLIPGFAGTQRLPRY-- 149

Query: 151 ALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
                 VG A A  +++L ++ I G EAL+ GLV   +  EE + + + +L K++AG+
Sbjct: 150 ------VGKAKAL-EMMLTSEPITGAEALKWGLVNGVF-PEETLLDDAKKLAKKIAGK 199

Length = 257

>gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase; Provisional

 Score = 46.0 bits (109), Expect = 5e-06
 Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 1/102 (0%)

Query: 100 PMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGS 159
            + TV A+ G   A G  ++L  DY +    +G + ++EV +G+ +P + A LF  +V  
Sbjct: 107 RLATVCAIRGACPAGGCAVSLCCDYRLQT-TEGTMGLNEVALGIPVPKFWARLFMGRVID 165

Query: 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRL 201
                 +LLR + ++  EA ++GL++    +   +  A+  +
Sbjct: 166 RKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAM 207

Length = 278

>gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 46/140 (32%), Positives = 66/140 (47%), Gaps = 14/140 (10%)

Query: 50  AFITTSHG-KFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVN 108
           A + T  G KFFS G DL    A G +  ARE    M + F     A+      ++AA+N
Sbjct: 49  ALVITGDGEKFFSAGADLN-LFADGDKAVARE----MARRFGEAFEALSAFRGVSIAAIN 103

Query: 109 GHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAA---LFREKVGSATARRD 165
           G+A   G   AL+ D  +    +  + + E  +GL LP  CA         VG   A+R 
Sbjct: 104 GYAMGGGLECALACDIRIAEE-QAQMALPEASVGL-LP--CAGGTQNLPWLVGEGWAKRM 159

Query: 166 VLLRAKKIKGEEALRMGLVE 185
           +L   +++    ALR+GLVE
Sbjct: 160 ILC-GERVDAATALRIGLVE 178

Length = 258

>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase)

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 36/171 (21%), Positives = 65/171 (38%), Gaps = 18/171 (10%)

Query: 28  PSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFK 87
           P  +  I+ A+  A+ +   G   +T +  K F +G D    Q      G      Y+  
Sbjct: 29  PLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGD----QKVRGDYG------YIDD 78

Query: 88  SFRP------LVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDI 141
           S         +   +   P P +A VNG+A   G +L +  D + +  +      +   +
Sbjct: 79  SGVHRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHMMCD-LTIAAENARFGQTGPKV 137

Query: 142 GLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEE 192
           G     Y ++     VG   A R++    ++   ++AL MGLV       +
Sbjct: 138 GSFDGGYGSSYMARIVGQKKA-REIWFLCRQYDAKQALDMGLVNTVVPLAD 187

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259

>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 18/105 (17%)

Query: 92  LVAAMMDLPMPTVAAVNGHAAAAGFILALSHDY-VVMRRDKGVLYMSEVDIGLT------ 144
           L A +  LP+P VAA++G     G  LAL+  Y V     K VL + EV +GL       
Sbjct: 93  LFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGT 152

Query: 145 --LPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAA 187
             LP          +G +TA  D++L  K+++ ++AL++GLV+  
Sbjct: 153 QRLP--------RLIGVSTA-LDMILTGKQLRAKQALKLGLVDDV 188

Length = 708

>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 12/156 (7%)

Query: 34  ILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLV 93
            +S + Q  A+       +T   G+ F  G DL+          A +    + ++F P++
Sbjct: 32  FISKLKQINADPKIRVVIVTGE-GRAFCVGADLS--------EFAPDFAIDLRETFYPII 82

Query: 94  AAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALF 153
             +       ++A+NG  A A   +ALS D+    RD   +  +   +GL   D   A F
Sbjct: 83  REIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFV-TAFQRLGLA-SDTGVAYF 140

Query: 154 REKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYD 189
             K+       ++L+   +   EEA R GL++ + D
Sbjct: 141 LLKLTGQRF-YEILVLGGEFTAEEAERWGLLKISED 175

Length = 248

>gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated

 Score = 42.5 bits (100), Expect = 6e-05
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 93  VAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAAL 152
           V A+  +P PTVAA+ G+A  AG  LAL+ D+ V   D      +E+  GL       A 
Sbjct: 92  VDAVAAIPKPTVAAITGYALGAGLTLALAADWRV-SGDNVKFGATEILAGLAPSGDGMAR 150

Query: 153 FREKVGSATARRDVLLRAKKIKGEEALRMGLVE 185
                G + A ++++   +    EEAL +GL++
Sbjct: 151 LTRAAGPSRA-KELVFSGRFFDAEEALALGLID 182

Length = 222

>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 14/160 (8%)

Query: 50  AFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNG 109
           A + T   K F+ G D+     AG+           +        A+   P P +AAVNG
Sbjct: 55  AIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYW-------EAIAQCPKPVIAAVNG 107

Query: 110 HAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAA--LFREKVGSATARRDVL 167
           +A   G  LA+  D +V           E+ +GL +P       L R  VG   A R + 
Sbjct: 108 YALGGGCELAMHADIIVAGES-ASFGQPEIKVGL-MPGAGGTQRLVR-AVGKFKAMR-MA 163

Query: 168 LRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAG 207
           L    +   EAL +GLV    + E+ +  A + L +++A 
Sbjct: 164 LTGCMVPAPEALAIGLVSEVVEDEQTLPRA-LELAREIAR 202

Length = 261

>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 53/182 (29%), Positives = 77/182 (42%), Gaps = 36/182 (19%)

Query: 50  AFITTSHGKFFSNGFDLAWAQAAGS--RTGARERVHYMFKSFRPL---VAAMMDLPMPTV 104
             + T  G+ FS+G D    ++AG         R  Y  +S   L   + A+  L  P +
Sbjct: 57  VVVLTGAGRGFSSGAD---HKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQPVI 113

Query: 105 AAVNGHAAAAGFILALSHDYVVMR-----RDKGV---LYMSEVDIGLTLPDYCAALFREK 156
           AAVNG A   G  LAL+ D  V       R  G+   L  SE+ +   LP          
Sbjct: 114 AAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLP--------RA 165

Query: 157 VGSATARRDVLLRAKKIKGEEALRMGLV----------EAAYDSEERVAEASMRLGKQLA 206
           +GS+ A  +++L  + +  EEA R+GLV          +  Y    R+A  S R G +L 
Sbjct: 166 IGSSRA-FEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFS-RPGIELT 223

Query: 207 GR 208
            R
Sbjct: 224 KR 225

Length = 276

>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 10/157 (6%)

Query: 52  ITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHA 111
           +  +  K F  G D+A  +A  +   A + V Y  +  R ++ A+  L +PT+AA+ G  
Sbjct: 58  LRGAGDKAFVAGTDIAQFRAFST---AEDAVAYERRIDR-VLGALEQLRVPTIAAIAGAC 113

Query: 112 AAAGFILALSHDYVVMRRDK--GVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLR 169
              G  +A + D  +       G      +   L++ +   A     +G+A  + D+L  
Sbjct: 114 VGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNL--ARLVALLGAARVK-DMLFT 170

Query: 170 AKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLA 206
           A+ ++ EEAL  GLV    +     A A   L + LA
Sbjct: 171 ARLLEAEEALAAGLVNEVVEDAALDARAD-ALAELLA 206

Length = 262

>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 7/112 (6%)

Query: 99  LPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAA--LFREK 156
           L  P +AA+NG A   G  L+++ D  +    K      EV +G+T P +     L R  
Sbjct: 96  LDKPVIAAINGFALGGGCELSMACDIRIASE-KAKFGQPEVGLGIT-PGFGGTQRLAR-I 152

Query: 157 VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
           VG   A+ +++     I  EEALR+GLV    + E+ + EA   L  ++A  
Sbjct: 153 VGPGKAK-ELIYTGDMINAEEALRIGLVNKVVEPEKLMEEA-KALANKIAAN 202

Length = 260

>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 18/185 (9%)

Query: 31  IDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLA-WAQAAGSRTGA-RERVHYMFKS 88
            + +++ I + K +     A I +  G  F  G D+   A + G+      +R+      
Sbjct: 32  FEELIATIKRLKKDRGI-RAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANL 90

Query: 89  FRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDY 148
            + +      LP+P +AA+ G     G  +AL  D  +   D  +  M E   GL +PD 
Sbjct: 91  AQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIM-EAKWGL-VPDM 148

Query: 149 CA-ALFREKVGSATARRDVLLR----AKKIKGEEALRMGLVEAAYDSEERVAEASMRLGK 203
                 R  V     R+DV       A+    EEAL +GLV    D       A++ L +
Sbjct: 149 AGTVSLRGLV-----RKDVARELTYTARVFSAEEALELGLVTHVSDDPL---AAALALAR 200

Query: 204 QLAGR 208
           ++A R
Sbjct: 201 EIAQR 205

Length = 262

>gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 1/99 (1%)

Query: 99  LPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVG 158
           +P   +A V G AA  G  L +  D  +  R+      ++ D+G     Y +A    +VG
Sbjct: 134 MPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVG 193

Query: 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEA 197
              AR ++    +    EEA  MG V A     E   EA
Sbjct: 194 QKFAR-EIFFLGRTYSAEEAHDMGAVNAVVPHAELETEA 231

Length = 302

>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 8/166 (4%)

Query: 49  SAFITTSHGKFFSNGFDL------AWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMP 102
           S  I +  G  F +G DL      +   ++G R  + ER+    K  +  + A+     P
Sbjct: 54  SVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQCRKP 113

Query: 103 TVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATA 162
            +AA++G     G  +  + D      D     + EVD+ +T            VG   A
Sbjct: 114 VIAAIHGACIGGGVDIVTACDIRYCSED-AFFSVKEVDLAITADLGTLQRLPSIVGYGNA 172

Query: 163 RRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
             ++ L  ++  G EA  +GLV   + S+E + E    + + +A +
Sbjct: 173 M-ELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAK 217

Length = 275

>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 49/172 (28%), Positives = 70/172 (40%), Gaps = 22/172 (12%)

Query: 35  LSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFK--SFRPL 92
           L+A  +   E       I T  G+ F +G DL         T A E      K     P 
Sbjct: 42  LAAAFKRLDEDDSVKVIILTGSGRAFCSGVDL---------TAAEEVFKGDVKDVETDP- 91

Query: 93  VAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYM-SEVDIGLTLPDYCAA 151
           VA M     P + A+NG A  AGF +AL+ D +V    +G  ++ +    G+  P +  +
Sbjct: 92  VAQMERCRKPIIGAINGFAITAGFEIALACDILVA--SRGAKFIDTHAKFGI-FPSWGLS 148

Query: 152 LFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEE------RVAEA 197
               ++  A   R+V L A  +  E A R GLV    +  E       VAEA
Sbjct: 149 QKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEA 200

Length = 265

>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 7/160 (4%)

Query: 26  LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYM 85
           +G   +  + SA  + +A+A+     + +S    F  G DL        R  +   V   
Sbjct: 19  IGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLK-----ERRKMSPSEVQKF 73

Query: 86  FKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTL 145
             S R   +++  L +PT+A V G A   G  LALS D  +   +  V  + E  + +  
Sbjct: 74  VNSLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEE-AVFGLPETGLAIIP 132

Query: 146 PDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVE 185
                      VG + A ++++   ++I   EA  MGLV 
Sbjct: 133 GAGGTQRLPRLVGRSRA-KELIFTGRRIGAREAASMGLVN 171

Length = 251

>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 6/171 (3%)

Query: 37  AIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAM 96
           A+A A+ +       +T +  K F +G D++  Q   SR+ A     Y         AA+
Sbjct: 46  ALAAAEDDDAIRVVVLTGAGEKAFVSGADIS--QFEESRSDAEAVAAYEQAVEAAQ-AAL 102

Query: 97  MDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREK 156
            D   PT+A + G+    G  +AL+ D  +   D     +    +GL           + 
Sbjct: 103 ADYAKPTIACIRGYCIGGGMGIALACDIRIAAED-SRFGIPAARLGLGYGYDGVKNLVDL 161

Query: 157 VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAG 207
           VG + A+ D+   A++    EALR+GLV     +++     +      +AG
Sbjct: 162 VGPSAAK-DLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAA-TIAG 210

Length = 269

>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 57/205 (27%), Positives = 82/205 (40%), Gaps = 26/205 (12%)

Query: 12  VLTLT----GSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLA 67
           V TLT    GS N+    LG   I ++  A+    A+       +  +  K F  G D+ 
Sbjct: 17  VATLTIRNAGSLNI----LGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIK 72

Query: 68  WAQAAGSRTGARERVHYMFKS-FRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVV 126
              A   +  A       F S  R L  A+   P+P +A + G     G  LA + D  +
Sbjct: 73  -EMATLDQASAE-----AFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRI 126

Query: 127 MRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSATARRDVLLRAKKIKGEEALRMGLVE 185
                    M EV +G  +P    AAL    +G A  R  +LL  + I   +AL  GLV+
Sbjct: 127 A-AHDAQFGMPEVRVG--IPSVIHAALLPRLIGWARTRW-LLLTGETIDAAQALAWGLVD 182

Query: 186 -----AAYDSE-ERVAEASMRLGKQ 204
                A  D+  ER+A +    G Q
Sbjct: 183 RVVPLAELDAAVERLAASLAGCGPQ 207

Length = 256

>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 15/193 (7%)

Query: 32  DSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRP 91
             IL A+  A+ + +     +  ++GK FS G DL   + A       + V  + K    
Sbjct: 32  QEILEALRLAEEDPSV-RFLLINANGKVFSVGGDLVEMKRAV----DEDDVQSLVK-IAE 85

Query: 92  LVA----AMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPD 147
           LV     A+  LP P +  V+G  A A   +A++ D+ +    K     + V +GL  PD
Sbjct: 86  LVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIA-STKTKFIQAFVGVGLA-PD 143

Query: 148 YCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAG 207
                   +         + +  + +  E+AL  G V    +S E++ +   +L K+L  
Sbjct: 144 AGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRVAES-EKLEKTCEQLLKKL-- 200

Query: 208 RKCTGEVYAEIRK 220
           R+ +   YA I+ 
Sbjct: 201 RRGSSNSYAAIKS 213

Length = 255

>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional

 Score = 39.3 bits (92), Expect = 9e-04
 Identities = 44/181 (24%), Positives = 75/181 (41%), Gaps = 25/181 (13%)

Query: 35  LSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLV 93
           L  I     E       I T  G K F  G DL   +A  +    R  V  +    R  +
Sbjct: 36  LQNILTQINEEANVRVVILTGAGEKAFCAGADLK-ERAGMNEEQVRHAVSLI----RTTM 90

Query: 94  AAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLT--------L 145
             +  LP P +AA+NG A   G  LAL+ D+ +   +   L ++E  + +         L
Sbjct: 91  EMVEQLPQPVIAAINGIALGGGLELALACDFRIA-AESASLGLTETTLAIIPGAGGTQRL 149

Query: 146 PDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQL 205
           P          VG A   ++++   ++I  +EA  +GLVE    +   + E ++ + +++
Sbjct: 150 PRLIG------VGRA---KELIYTGRRISAQEAKEIGLVEFVVPAHL-LEEKAIEIAEKI 199

Query: 206 A 206
           A
Sbjct: 200 A 200

Length = 260

>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 46/165 (27%), Positives = 64/165 (38%), Gaps = 30/165 (18%)

Query: 55  SHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMM----DLPMPTVAAVNGH 110
           + GK F  G DL   +AA           Y    F    + +M     LP P +A V+G 
Sbjct: 63  AAGKAFCAGHDLKEMRAARGLA-------YFRALFA-RCSRVMQAIVALPQPVIARVHGI 114

Query: 111 AAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCA----ALFREKVGSATARR-- 164
           A AAG  L  S D  V   D     +  V+IGL    +C+    AL R        R+  
Sbjct: 115 ATAAGCQLVASCDLAVA-ADTARFAVPGVNIGL----FCSTPMVALSR-----NVPRKQA 164

Query: 165 -DVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
            ++LL  + I    A   GLV       + +  A  RL   +A +
Sbjct: 165 MEMLLTGEFIDAATAREWGLVNRVV-PADALDAAVARLAAVIAAK 208

Length = 266

>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 59/219 (26%), Positives = 84/219 (38%), Gaps = 45/219 (20%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR--LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSN 62
           E H  V  LTL    N  E R  L  +   ++ +A+A+A A+       + T     F  
Sbjct: 9   ETHDRVRTLTL----NRPEARNALSAALRRALFAALAEADADDDV-DVVVLTGADPAFCA 63

Query: 63  GFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSH 122
           G DL      GS  GA++ +            A   +  P + A+NG A   G  LAL+ 
Sbjct: 64  GLDLKELGGDGSAYGAQDAL-------PNPSPAWPAMRKPVIGAINGAAVTGGLELALAC 116

Query: 123 DYVVMRRDKGVLYMSE----------VDI----GLTLPDYCAALFREKVGSATARRDVLL 168
           D         +L  SE          V I    GL+          +KVG   ARR + L
Sbjct: 117 D---------ILIASERARFADTHARVGILPGWGLS------VRLPQKVGIGRARR-MSL 160

Query: 169 RAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAG 207
               +   +ALR GLV      +E +   + RL   +AG
Sbjct: 161 TGDFLDAADALRAGLVTEVVPHDELL-PRARRLAASIAG 198

Length = 258

>gnl|CDD|132932 cd07021, Clp_protease_NfeD_like, Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 14/34 (41%), Positives = 24/34 (70%)

Query: 95  AMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMR 128
            +++ P+PT+A VN  AA+AG ++AL+ D + M 
Sbjct: 53  LILNSPIPTIAYVNDRAASAGALIALAADEIYMA 86

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cleaving hydrophobic substrates. Difference in oligomeric form and catalytic residues between 1510-N (forming a dimer) and ClpP (forming a tetradecamer) shows a possible functional difference: 1510-N is likely to have a regulatory function while ClpP is involved in protein quality control. Length = 178

>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 43/133 (32%), Positives = 59/133 (44%), Gaps = 26/133 (19%)

Query: 5   EKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKA------EATPG-SAFITTSHG 57
           E+ G V ++T+            P A +++ +A+AQ  A      +A P  S  I T  G
Sbjct: 8   ERRGRVLIITINR----------PEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAG 57

Query: 58  KFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFI 117
             F  G DL  A A G      ER     + F  L       P+  +AAV G+A A GF 
Sbjct: 58  GTFCAGMDLK-AFARG------ERPSIPGRGFGGLTERPPRKPL--IAAVEGYALAGGFE 108

Query: 118 LALSHDYVVMRRD 130
           LAL+ D +V  RD
Sbjct: 109 LALACDLIVAARD 121

Length = 254

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
PRK08139	266	enoyl-CoA hydratase; Validated	100.0
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	100.0
PRK05980	260	enoyl-CoA hydratase; Provisional	100.0
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	100.0
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	100.0
PRK06190	258	enoyl-CoA hydratase; Provisional	100.0
PRK08150	255	enoyl-CoA hydratase; Provisional	100.0
PRK06142	272	enoyl-CoA hydratase; Provisional	100.0
PRK05995	262	enoyl-CoA hydratase; Provisional	100.0
PRK05862	257	enoyl-CoA hydratase; Provisional	100.0
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	100.0
PRK07260	255	enoyl-CoA hydratase; Provisional	100.0
PRK06143	256	enoyl-CoA hydratase; Provisional	100.0
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	100.0
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	100.0
PRK06144	262	enoyl-CoA hydratase; Provisional	100.0
PRK06563	255	enoyl-CoA hydratase; Provisional	100.0
PRK08258	277	enoyl-CoA hydratase; Provisional	100.0
PRK06127	269	enoyl-CoA hydratase; Provisional	100.0
PRK05869	222	enoyl-CoA hydratase; Validated	100.0
PRK08140	262	enoyl-CoA hydratase; Provisional	100.0
KOG1680	290	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PRK09245	266	enoyl-CoA hydratase; Provisional	100.0
PRK07658	257	enoyl-CoA hydratase; Provisional	100.0
PRK09076	258	enoyl-CoA hydratase; Provisional	100.0
PRK07327	268	enoyl-CoA hydratase; Provisional	100.0
PRK08138	261	enoyl-CoA hydratase; Provisional	100.0
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	100.0
PRK06023	251	enoyl-CoA hydratase; Provisional	100.0
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	100.0
PRK07511	260	enoyl-CoA hydratase; Provisional	100.0
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	100.0
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK06688	259	enoyl-CoA hydratase; Provisional	100.0
PRK08252	254	enoyl-CoA hydratase; Provisional	100.0
PRK07468	262	enoyl-CoA hydratase; Provisional	100.0
PRK06213	229	enoyl-CoA hydratase; Provisional	100.0
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	100.0
PRK07657	260	enoyl-CoA hydratase; Provisional	100.0
PRK07799	263	enoyl-CoA hydratase; Provisional	100.0
PRK07659	260	enoyl-CoA hydratase; Provisional	100.0
PLN02600	251	enoyl-CoA hydratase	100.0
PRK05864	276	enoyl-CoA hydratase; Provisional	100.0
PRK05870	249	enoyl-CoA hydratase; Provisional	100.0
PRK06494	259	enoyl-CoA hydratase; Provisional	100.0
PRK08259	254	enoyl-CoA hydratase; Provisional	100.0
PLN02888	265	enoyl-CoA hydratase	100.0
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	100.0
PRK05981	266	enoyl-CoA hydratase; Provisional	100.0
PRK07938	249	enoyl-CoA hydratase; Provisional	100.0
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	100.0
PRK06495	257	enoyl-CoA hydratase; Provisional	100.0
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	100.0
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	100.0
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	100.0
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	100.0
PRK08260	296	enoyl-CoA hydratase; Provisional	100.0
PRK06210	272	enoyl-CoA hydratase; Provisional	100.0
PRK08290	288	enoyl-CoA hydratase; Provisional	100.0
PRK06072	248	enoyl-CoA hydratase; Provisional	100.0
PRK07509	262	enoyl-CoA hydratase; Provisional	100.0
PRK07854	243	enoyl-CoA hydratase; Provisional	100.0
PLN02921	327	naphthoate synthase	100.0
PRK08272	302	enoyl-CoA hydratase; Provisional	100.0
PRK07827	260	enoyl-CoA hydratase; Provisional	100.0
PRK08321	302	naphthoate synthase; Validated	100.0
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK12478	298	enoyl-CoA hydratase; Provisional	100.0
PRK08788	287	enoyl-CoA hydratase; Validated	100.0
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	100.0
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	100.0
KOG1681	292	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	100.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	100.0
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	100.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	100.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
KOG1679	291	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	100.0
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	100.0
KOG0016	266	consensus Enoyl-CoA hydratase/isomerase [Lipid tra	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	100.0
KOG1682	287	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
KOG1684	401	consensus Enoyl-CoA hydratase [Lipid transport and	99.97
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.87
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.85
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	99.73
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.68
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.66
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	99.65
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	99.61
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.59
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	99.59
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.51
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	99.43
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	99.26
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	99.08
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	99.01
PRK10949	618	protease 4; Provisional	98.99
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	98.94
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	98.93
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	98.87
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	98.84
PRK11778	330	putative inner membrane peptidase; Provisional	98.82
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	98.79
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	98.72
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	98.71
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	98.6
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	98.59
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	98.57
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	98.57
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	98.56
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	98.5
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	98.46
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	98.36
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	98.33
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	98.21
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	98.2
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	98.2
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	98.18
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	98.09
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	98.09
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	98.08
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	98.05
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	98.01
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	97.99
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	97.95
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	97.93
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	97.82
CHL00174	296	accD acetyl-CoA carboxylase beta subunit; Reviewed	97.72
PRK10949	618	protease 4; Provisional	97.7
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	97.61
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	97.54
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	97.47
COG0777	294	AccD Acetyl-CoA carboxylase beta subunit [Lipid me	96.94
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	96.91
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	96.83
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	96.37
KOG0840	275	consensus ATP-dependent Clp protease, proteolytic	95.92
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	95.1
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	92.13
PF02601	319	Exonuc_VII_L: Exonuclease VII, large subunit; Inte	88.11
PF06833	234	MdcE: Malonate decarboxylase gamma subunit (MdcE);	86.14
KOG0540	536	consensus 3-Methylcrotonyl-CoA carboxylase, non-bi	85.91
TIGR00237	432	xseA exodeoxyribonuclease VII, large subunit. This	85.66

>PRK08139 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.1e-50  Score=343.28  Aligned_cols=214  Identities=23%  Similarity=0.310  Sum_probs=194.0

Q ss_pred             CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      ++.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +||+||.|++||+|.|++++....   . ..
T Consensus        12 ~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~---~-~~   84 (266)
T PRK08139         12 LLLREDRDGVATLTLNRPQ--AFNALSEAMLAALQAALDAIAADPSVR-VVVLAAAGKAFCAGHDLKEMRAAR---G-LA   84 (266)
T ss_pred             ceEEEeeCCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHHhcCCCee-EEEEecCCCcceeccCHHHHhccc---c-hh
Confidence            3678889999999999997  889999999999999999999999999 999999999999999999875421   1 22


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCH
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSA  160 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~  160 (243)
                      ....+.+.+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++++.++++++| .
T Consensus        85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~~~~~l~r~vG-~  161 (266)
T PRK08139         85 YFRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADT-ARFAVPGVNIGL-FCSTPMVALSRNVP-R  161 (266)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCC-CEEeCcccCcCC-CCCccHHHHHHHhC-H
Confidence            23344556778899999999999999999999999999999999999987 899999999999 68777788999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      .++++++++|++++|+||+++||||+|+|+ +++.+++.++++++++.+  +.++..+|+.+++...
T Consensus       162 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  225 (266)
T PRK08139        162 KQAMEMLLTGEFIDAATAREWGLVNRVVPA-DALDAAVARLAAVIAAKS--PAAVRIGKEAFYRQAE  225 (266)
T ss_pred             HHHHHHHHcCCccCHHHHHHcCCccEeeCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999998 889999999999999998  9999999999976543

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=100.00  E-value=4.9e-50  Score=334.19  Aligned_cols=225  Identities=66%  Similarity=1.069  Sum_probs=198.6

Q ss_pred             CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      ||+++++++|++|+||||   +.|++|.+|+.+|.+++++++.|++++.+||++|.|++||+|.|++++... . .. ..
T Consensus         1 ~~~~~~~~~v~~i~Lnrp---~~Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~-~-~~-~~   74 (239)
T PLN02267          1 MCTLEKRGNLFILTLTGD---GEHRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAA-G-SA-PS   74 (239)
T ss_pred             CceeEecCCEEEEEeCCC---CcCcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhcc-c-cC-HH
Confidence            789999999999999999   459999999999999999999998875377789999999999999987532 1 11 22


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCH
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSA  160 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~  160 (243)
                      ....+...+++++.++.++||||||+|||+|+|||++|+++||+||+++++++|++||+++|+++|++++.++++++| .
T Consensus        75 ~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG-~  153 (239)
T PLN02267         75 RLHLMVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIG-S  153 (239)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcC-h
Confidence            223345567888999999999999999999999999999999999998655799999999999558888889999999 8


Q ss_pred             HHH-HHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHhh
Q 026137          161 TAR-RDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGL  232 (243)
Q Consensus       161 ~~a-~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~~  232 (243)
                      .++ ++++++|++++|+||+++||||+++++.+++.+++.++|+++++.++.+.++..+|+.++++..+.+..
T Consensus       154 ~~a~~~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~~~~~~~~~~k~~~~~~~~~~~~~  226 (239)
T PLN02267        154 PAARRDVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAARKWNGEVYASIRKSLLPEVCGKLGL  226 (239)
T ss_pred             HHHHHHHHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHhcc
Confidence            888 699999999999999999999999986478999999999999998877899999999999999998775

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.9e-50  Score=339.34  Aligned_cols=216  Identities=22%  Similarity=0.318  Sum_probs=192.2

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.++++.++.|++++ +||+||.| ++||+|.|++++..... .....
T Consensus         5 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~~~~   80 (260)
T PRK05980          5 VLIEIRDGIALLTLNRPE--KLNALNYALIDRLLARLDAIEVDESVR-AVILTGAGDRAFSAGADIHEFSASVA-AGADV   80 (260)
T ss_pred             EEEEEECCEEEEEECCcc--cccCCCHHHHHHHHHHHHHHhhCCCcE-EEEEEeCCCCceEcCcCHHHHhhhcc-ccchh
Confidence            678889999999999998  899999999999999999999999999 99999998 79999999998754211 01112


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                      ....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-  157 (260)
T PRK05980         81 ALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASER-ALFAKPEIRLGM-PPTFGGTQRLPRLAG-  157 (260)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCC-CEecCcccccCC-CCCchHhhHHHhhcC-
Confidence            23345556678889999999999999999999999999999999999987 899999999999 57665 579999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      ..++++++++|++++|+||+++||||+++|+ +++++++.++++++++.+  +.+++.+|+.+++...
T Consensus       158 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~~~~~~~  222 (260)
T PRK05980        158 RKRALELLLTGDAFSAERALEIGLVNAVVPH-EELLPAARALARRIIRHS--PVAVAAILTAVTRGLN  222 (260)
T ss_pred             HHHHHHHHHcCCccCHHHHHHcCCCCcccCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999998 889999999999999998  8899999999876543

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=100.00  E-value=5.1e-50  Score=340.71  Aligned_cols=217  Identities=16%  Similarity=0.217  Sum_probs=192.2

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|++||+|.|++++..... ......
T Consensus        10 i~~~~~~~va~itlnrp~--~~Nal~~~m~~el~~al~~~~~d~~vr-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~   85 (275)
T PRK09120         10 VKVEVEDGIAWVTLNRPE--KRNAMSPTLNREMIDVLDALEFDDDAG-VLVLTGAGDAWSAGMDLKEYFRETD-AQPEIL   85 (275)
T ss_pred             EEEEEECCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHHhCCCce-EEEEEcCCCceecCcCHHHHhhccc-cchhHH
Confidence            678899999999999998  899999999999999999999999999 9999999999999999998753211 110111


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+...+++++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus        86 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~iG-~  162 (275)
T PRK09120         86 QERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADE-AQFGLSEINWGI-PPGGGVSKAMADTVG-H  162 (275)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCC-cEecCCccccCC-CCCcchHHHHHHHcC-H
Confidence            2223345677888999999999999999999999999999999999987 899999999999 67766 578999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      .++++++++|++++|+||+++|||++|||+ +++++++.+++++++..+  +.+++.+|+.++.....
T Consensus       163 ~~a~~llltg~~~~A~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~~  227 (275)
T PRK09120        163 RDALYYIMTGETFTGRKAAEMGLVNESVPL-AQLRARTRELAAKLLEKN--PVVLRAAKDGFKRVREL  227 (275)
T ss_pred             HHHHHHHhcCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999997 889999999999999998  99999999999875443

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=100.00  E-value=6e-50  Score=337.15  Aligned_cols=210  Identities=21%  Similarity=0.327  Sum_probs=189.6

Q ss_pred             CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      +|.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +||+||.|++||+|.|++++...   +. . 
T Consensus         3 ~i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~~~~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~---~~-~-   74 (255)
T PRK09674          3 ELLVSRQQRVLLLTLNRPE--ARNALNNALLTQLVNELEAAATDTSIG-VCVITGNARFFAAGADLNEMAEK---DL-A-   74 (255)
T ss_pred             eEEEEeECCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhhCCCcE-EEEEECCCCceecccChHhHhcc---ch-h-
Confidence            4678889999999999997  889999999999999999999999999 99999999999999999987541   10 1 


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                        ..+.....+++.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        75 --~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~ig-  149 (255)
T PRK09674         75 --ATLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGEN-ARFGLPEITLGI-MPGAGGTQRLIRSVG-  149 (255)
T ss_pred             --hhHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCC-CEEeCchhhcCC-CCCccHHHHHHHHhC-
Confidence              112334567888999999999999999999999999999999999987 899999999999 57766 678999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL  226 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ..++++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..|  +.++..+|+.+++..
T Consensus       150 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~  213 (255)
T PRK09674        150 KSLASQMVLTGESITAQQAQQAGLVSEVFPP-ELTLERALQLASKIARHS--PLALRAAKQALRQSQ  213 (255)
T ss_pred             HHHHHHHHHcCCccCHHHHHHcCCCcEecCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999998 889999999999999998  999999999997653

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.8e-50  Score=336.74  Aligned_cols=212  Identities=22%  Similarity=0.330  Sum_probs=191.4

Q ss_pred             CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      +|.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|++||+|+|++++....   . ..
T Consensus         5 ~v~~~~~~~va~Itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~~---~-~~   77 (258)
T PRK06190          5 ILLVETHDRVRTLTLNRPE--ARNALSAALRRALFAALAEADADDDVD-VVVLTGADPAFCAGLDLKELGGDG---S-AY   77 (258)
T ss_pred             eEEEEeeCCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCCccCCcCHHHHhccc---c-hh
Confidence            4788999999999999998  899999999999999999999999999 999999999999999999886421   1 11


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                      ..   ...+++++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| 
T Consensus        78 ~~---~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG-  151 (258)
T PRK06190         78 GA---QDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASER-ARFADTHARVGI-LPGWGLSVRLPQKVG-  151 (258)
T ss_pred             hH---HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCC-CEEECcccccCc-CCCccHHHHHHHHhC-
Confidence            11   234567888999999999999999999999999999999999987 899999999999 67765 578999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      ..++++++++|++++|+||+++||||+++|+ +++++++.++++++++.+  +.+++.+|+.++.....
T Consensus       152 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~  217 (258)
T PRK06190        152 IGRARRMSLTGDFLDAADALRAGLVTEVVPH-DELLPRARRLAASIAGNN--PAAVRALKASYDDGAAA  217 (258)
T ss_pred             HHHHHHHHHhCCccCHHHHHHcCCCeEecCH-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999997 889999999999999998  99999999999865443

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.1e-50  Score=335.85  Aligned_cols=210  Identities=17%  Similarity=0.226  Sum_probs=188.7

Q ss_pred             CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      +|.++++++|++||||||+  +.|++|.+|+.+|.++++.++  ++++ +|||||.|++||+|.|++++....     ..
T Consensus         3 ~v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~--~~vr-~vvltg~g~~F~aG~Dl~~~~~~~-----~~   72 (255)
T PRK08150          3 LVSYELDGGVATIGLNRPA--KRNALNDGLIAALRAAFARLP--EGVR-AVVLHGEGDHFCAGLDLSELRERD-----AG   72 (255)
T ss_pred             eEEEEeeCCEEEEEEcCCc--cccCCCHHHHHHHHHHHHHhh--cCCe-EEEEECCCCceecCcCHHHHhhcc-----ch
Confidence            4678899999999999998  899999999999999999997  7899 999999999999999999986421     11


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                      ....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        73 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~iG-  149 (255)
T PRK08150         73 EGMHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADES-TYFALPEGQRGI-FVGGGGSVRVPRLIG-  149 (255)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCC-CEEeccccccCC-CCCccHHHHHHHHhC-
Confidence            11233456678889999999999999999999999999999999999987 899999999999 56665 578999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL  226 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ..++++++++|++++|+||+++||||++||+ +++.+++.++++++++.+  +.+++.+|+.++...
T Consensus       150 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~  213 (255)
T PRK08150        150 VARMTDMMLTGRVYDAQEGERLGLAQYLVPA-GEALDKAMELARRIAQNA--PLTNFAVLNALPRIA  213 (255)
T ss_pred             HHHHHHHHHcCCcCCHHHHHHcCCccEeeCc-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999998 889999999999999998  899999999997653

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9e-50  Score=339.13  Aligned_cols=219  Identities=21%  Similarity=0.279  Sum_probs=193.3

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCC------
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSR------   75 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~------   75 (243)
                      +.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|++||+|.|++++......      
T Consensus         8 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~   84 (272)
T PRK06142          8 FTVELADHVAQVTLNRPG--KGNAMNPAFWSELPEIFRWLDADPEVR-AVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGL   84 (272)
T ss_pred             EEEEecCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhhCCCeE-EEEEECCCCceecccCHHHHhhhccccccccc
Confidence            567889999999999998  899999999999999999999999999 99999999999999999987541100      


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHH
Q 026137           76 TGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFR  154 (243)
Q Consensus        76 ~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~  154 (243)
                      .........+...+++++.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~  162 (272)
T PRK06142         85 ARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASAD-AKFSVREVDLGM-VADVGSLQRLP  162 (272)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCC-CeecchhhhhCC-CCCchHHHHHH
Confidence            0001223334556788899999999999999999999999999999999999987 899999999999 57666 57999


Q ss_pred             HHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137          155 EKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       155 ~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      +++| ..++++++++|++++|+||+++||||+|+++.+++++++.++++++++.|  +.++..+|+.+++....
T Consensus       163 ~~~G-~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~--~~a~~~~K~~l~~~~~~  233 (272)
T PRK06142        163 RIIG-DGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKS--PLAVRGTKEVLDYMRDH  233 (272)
T ss_pred             HHhC-HHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhcC
Confidence            9999 99999999999999999999999999999865789999999999999998  99999999999866443

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.7e-50  Score=337.57  Aligned_cols=214  Identities=23%  Similarity=0.344  Sum_probs=191.2

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||+|+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|++||+|.|++++..... .. ...
T Consensus         6 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~-~~~   80 (262)
T PRK05995          6 LEIEQRGQVATVTLNRPD--VRNAFNETVIAELTAAFRALDADDSVR-AVVLAGAGKAFCAGADLNWMKKMAG-YS-DDE   80 (262)
T ss_pred             EEEEeeCCEEEEEEcCcc--cccCCCHHHHHHHHHHHHHHhcCCCeE-EEEEECCCCccccCcCHHHHhhhcc-cC-chh
Confidence            578889999999999997  899999999999999999999999999 9999999999999999998754211 01 111


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSAT  161 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~  161 (243)
                      .......+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+.++++++| ..
T Consensus        81 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~l~~~vg-~~  157 (262)
T PRK05995         81 NRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADH-AVFCLSEVRLGL-IPATISPYVIRAMG-ER  157 (262)
T ss_pred             hhhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCC-CEEeCccccccc-CccchHHHHHHHhC-HH
Confidence            1112345678889999999999999999999999999999999999987 999999999999 68888888999999 99


Q ss_pred             HHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137          162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL  226 (243)
Q Consensus       162 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ++++++++|++++|+||+++||||+++|+ +++.+++.++++++++.+  +.++..+|+.++...
T Consensus       158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~  219 (262)
T PRK05995        158 AARRYFLTAERFDAAEALRLGLVHEVVPA-EALDAKVDELLAALVANS--PQAVRAGKRLVRDVA  219 (262)
T ss_pred             HHHHHHHcCCccCHHHHHHcCCCCeecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhh
Confidence            99999999999999999999999999997 889999999999999998  999999999997653

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.9e-50  Score=336.55  Aligned_cols=210  Identities=20%  Similarity=0.263  Sum_probs=189.0

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +||++|.|+.||+|.|++++...   +. .. 
T Consensus         6 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~---~~-~~-   77 (257)
T PRK05862          6 ILVETRGRVGLITLNRPK--ALNALNDALMDELGAALAAFDADEGIG-AIVITGSEKAFAAGADIKEMADL---SF-MD-   77 (257)
T ss_pred             EEEEeeCCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhhCCCee-EEEEECCCCceECCcChHhHhcc---ch-hH-
Confidence            677889999999999997  789999999999999999999999999 99999999999999999987642   11 11 


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                        .+...+.+++.+|..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| .
T Consensus        78 --~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-~  152 (257)
T PRK05862         78 --VYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADT-AKFGQPEIKLGV-LPGMGGSQRLTRAVG-K  152 (257)
T ss_pred             --HHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCC-CEEeCchhccCc-CCCccHHHHHHHHhC-H
Confidence              12233455778899999999999999999999999999999999987 899999999999 67776 579999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      .++++++++|++++|+||+++||||+++|+ +++++++.++++++++.+  +.++..+|+.+++.+.
T Consensus       153 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~~  216 (257)
T PRK05862        153 AKAMDLCLTGRMMDAAEAERAGLVSRVVPA-DKLLDEALAAATTIASFS--LPAVMMAKEAVNRAYE  216 (257)
T ss_pred             HHHHHHHHhCCccCHHHHHHcCCCCEeeCH-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999998 899999999999999988  8999999999977543

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=100.00  E-value=6.7e-50  Score=336.95  Aligned_cols=210  Identities=20%  Similarity=0.295  Sum_probs=189.5

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.++++.++.|++++ +||+||.| ++||+|.|++++... . +  ..
T Consensus         4 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVl~g~g~~~F~aG~Dl~~~~~~-~-~--~~   76 (256)
T TIGR03210         4 ILYEKRNGIAWIMINRPA--KMNAFRGQTCDELIHALKDAGYDRQIG-VIVLAGAGDKAFCTGGDQSTHDGG-Y-D--GR   76 (256)
T ss_pred             eEEEeeCCEEEEEEcCCc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEecCCCCceecCcChHHHhcc-c-c--ch
Confidence            678899999999999998  899999999999999999999999999 99999998 799999999987431 1 1  11


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCH
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSA  160 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~  160 (243)
                        ..+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+.+|++|++++++++| .
T Consensus        77 --~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~G~~~~~~~~~~l~~~vG-~  152 (256)
T TIGR03210        77 --GTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEK-AQFGQVGPKVGSVDPGYGTALLARVVG-E  152 (256)
T ss_pred             --hHHHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCC-CEEecccccccccCCccHHHHHHHHhC-H
Confidence              112234567888999999999999999999999999999999999987 999999999998556677889999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD  225 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~  225 (243)
                      .+|++++++|++++|+||+++||||+++|+ +++.+++.++++++++.|  +.+++.+|+.++..
T Consensus       153 ~~A~~lll~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~ia~~~--~~a~~~~K~~l~~~  214 (256)
T TIGR03210       153 KKAREIWYLCRRYTAQEALAMGLVNAVVPH-DQLDAEVQKWCDEIVEKS--PTAIAIAKRSFNMD  214 (256)
T ss_pred             HHHHHHHHhCCCcCHHHHHHcCCceeeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence            999999999999999999999999999997 889999999999999998  99999999999765

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-49  Score=335.43  Aligned_cols=217  Identities=22%  Similarity=0.314  Sum_probs=193.2

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      +.++++++|++|+||||+  +.|++|.+|+.+|.++++.++.|++++ +||++|.|++||+|+|++++..... ..+...
T Consensus         4 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~   79 (255)
T PRK07260          4 IIYEVEDDLATLTLNRPE--VSNGFNIPMCQEILEALRLAEEDPSVR-FLLINANGKVFSVGGDLVEMKRAVD-EDDVQS   79 (255)
T ss_pred             eEEEEECCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCcccccCHHHHHhhcc-ccchhh
Confidence            567889999999999997  889999999999999999999999999 9999999999999999998864211 111222


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+.+.+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| .
T Consensus        80 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vg-~  156 (255)
T PRK07260         80 LVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTK-TKFIQAFVGVGL-APDAGGLFLLTRAIG-L  156 (255)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCC-CEEechHhhcCC-CCCCchhhhhHHhhC-H
Confidence            2234556788889999999999999999999999999999999999987 899999999999 56665 568999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      .++++++++|++++|+||+++|||++++|+ +++.+++.++++++++.+  +.++..+|+.++.....
T Consensus       157 ~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~~~~  221 (255)
T PRK07260        157 NRATHLAMTGEALTAEKALEYGFVYRVAES-EKLEKTCEQLLKKLRRGS--SNSYAAIKSLVWESFFK  221 (255)
T ss_pred             HHHHHHHHhCCccCHHHHHHcCCcceecCH-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999997 889999999999999998  99999999999876544

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-49  Score=335.50  Aligned_cols=210  Identities=23%  Similarity=0.307  Sum_probs=190.2

Q ss_pred             eee-eeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHH
Q 026137            3 TSE-KHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         3 ~~~-~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      .++ .+++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.| ++||+|.|++++... .    ..
T Consensus         9 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~~F~aG~Dl~~~~~~-~----~~   80 (256)
T PRK06143          9 GVTRDDRGVATLTIRNAG--SLNILGTPVILALTQALRWLAADPDVR-VLVLRGAGEKAFIGGADIKEMATL-D----QA   80 (256)
T ss_pred             eeeecCCCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhcCCCcE-EEEEEeCCCCcccCCcCHHHHhhc-C----hh
Confidence            445 46899999999998  899999999999999999999999999 99999998 799999999987542 1    22


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCH
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSA  160 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~  160 (243)
                      ....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|+++++++++++| .
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~G~-p~~~~~~~l~~~iG-~  157 (256)
T PRK06143         81 SAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHD-AQFGMPEVRVGI-PSVIHAALLPRLIG-W  157 (256)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCC-CEEeCCccccCC-CCccHHHHHHHhcC-H
Confidence            23345566788999999999999999999999999999999999999987 899999999998 67677789999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL  226 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~  226 (243)
                      .++++++++|++++|+||+++||||++||+ +++.+++.+++++++..|  +.+++.+|+.++...
T Consensus       158 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~  220 (256)
T PRK06143        158 ARTRWLLLTGETIDAAQALAWGLVDRVVPL-AELDAAVERLAASLAGCG--PQALRQQKRLLREWE  220 (256)
T ss_pred             HHHHHHHHcCCcCCHHHHHHCCCcCeecCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHc
Confidence            999999999999999999999999999998 899999999999999998  999999999998653

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=100.00  E-value=1.3e-49  Score=335.36  Aligned_cols=214  Identities=23%  Similarity=0.284  Sum_probs=188.7

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|+ ++ +||+||.|++||+|.|++++..... .. ...
T Consensus         1 ~~~e~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~-v~-~vVltg~g~~F~aG~Dl~~~~~~~~-~~-~~~   74 (256)
T TIGR02280         1 ILSALEAGVARLTLNRPD--KLNSFTAEMHLELREALERVERDD-AR-ALMLTGAGRGFCAGQDLSERNPTPG-GA-PDL   74 (256)
T ss_pred             CeEEEECCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhcCC-cE-EEEEECCCCCcccCcCHHHHhhccc-cc-hhH
Confidence            568899999999999998  899999999999999999999998 99 9999999999999999998764211 00 111


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+...+..++.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus        75 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~-a~f~~pe~~lG~-~p~~g~~~~l~~~vG-~  151 (256)
T TIGR02280        75 GRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAES-ARFIQAFAKIGL-IPDSGGTWSLPRLVG-R  151 (256)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCC-CEEeChhhhcCC-CCCccHHHHHHHHhC-H
Confidence            1122333466788999999999999999999999999999999999988 899999999999 56665 568999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      .++++++++|++++|+||+++|||++++|+ +++.+++.++++++++.|  +.++..+|+.++....
T Consensus       152 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~~~~~~K~~l~~~~~  215 (256)
T TIGR02280       152 ARAMGLAMLGEKLDARTAASWGLIWQVVDD-AALMDEAQALAVHLAAQP--TRGLALTKRAIQAAAT  215 (256)
T ss_pred             HHHHHHHHcCCCCCHHHHHHcCCcceeeCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999998 789999999999999998  8999999999986543

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=100.00  E-value=7.7e-50  Score=338.08  Aligned_cols=215  Identities=21%  Similarity=0.287  Sum_probs=190.2

Q ss_pred             ceeeee-CCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEKH-GDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~~-~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |+++++ ++|++||||||+  +.|++|.+|+.+|.++++.++.|++++ +|||||.|++||+|.|++++..... .. ..
T Consensus         7 l~~~~~~~~v~~itlnrp~--~~Nal~~~~~~el~~al~~~~~d~~vr-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~-~~   81 (265)
T PRK05674          7 IELIRDPRGFATLWLSRAD--KNNAFNAQMIRELILALDQVQSDASLR-FLLLRGRGRHFSAGADLAWMQQSAD-LD-YN   81 (265)
T ss_pred             EEEEEcCCCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhcCCCee-EEEEECCCCCcccCcCHHHHhhccc-cc-ch
Confidence            567775 789999999998  899999999999999999999999999 9999999999999999998754211 00 11


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCH
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSA  160 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~  160 (243)
                      ........+.+++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+.++++++| .
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gi-~p~~~~~~l~~~vG-~  158 (265)
T PRK05674         82 TNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADD-AQFCLSEVRIGL-APAVISPFVVKAIG-E  158 (265)
T ss_pred             hhhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCC-CEEeCcccccCC-CcchhHHHHHHHhC-H
Confidence            11112234567888999999999999999999999999999999999987 899999999999 68888778999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      .++++++++|++++|+||+++|||++|+|+ +++.+++.++++++++.+  +.+++.+|+.++....
T Consensus       159 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~  222 (265)
T PRK05674        159 RAARRYALTAERFDGRRARELGLLAESYPA-AELEAQVEAWIANLLLNS--PQALRASKDLLREVGD  222 (265)
T ss_pred             HHHHHHHHhCcccCHHHHHHCCCcceecCH-HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999997 889999999999999998  9999999999976543

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-49  Score=335.62  Aligned_cols=213  Identities=19%  Similarity=0.237  Sum_probs=191.3

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++|+||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.| ++||+|.|++++.....    ..
T Consensus        10 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVltg~g~~~F~aG~Dl~~~~~~~~----~~   82 (262)
T PRK06144         10 LLLEVRGGIARITFNRPA--ARNAMTWAMYEGLAEICEAIAADPSIR-AVVLRGAGDKAFVAGTDIAQFRAFST----AE   82 (262)
T ss_pred             eEEEeeCCEEEEEecCCc--ccCCCCHHHHHHHHHHHHHHhcCCCce-EEEEecCCCCceecCcCHHHHhhccc----hh
Confidence            678899999999999997  889999999999999999999999999 99999998 79999999998765211    12


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccc-cCCCCChhh-HHHHHHHhC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVD-IGLTLPDYC-AALFREKVG  158 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~-~G~~~p~~g-~~~l~~~~g  158 (243)
                      ....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||++ +|+ +|++| ++++++++|
T Consensus        83 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~~G~-~p~~g~~~~l~~~vG  160 (262)
T PRK06144         83 DAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPS-ARFGFPIARTLGN-CLSMSNLARLVALLG  160 (262)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCC-CEeechhHHhccC-CCCccHHHHHHHHhC
Confidence            22234456778889999999999999999999999999999999999987 899999997 999 56665 579999999


Q ss_pred             CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                       ..++++++++|++++|+||+++||||+|+|+ +++.+++.++++++++.+  +.++..+|+.++....
T Consensus       161 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~i~~~~--~~a~~~~K~~l~~~~~  225 (262)
T PRK06144        161 -AARVKDMLFTARLLEAEEALAAGLVNEVVED-AALDARADALAELLAAHA--PLTLRATKEALRRLRR  225 (262)
T ss_pred             -HHHHHHHHHcCCCcCHHHHHHcCCcCeecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhh
Confidence             9999999999999999999999999999998 899999999999999998  9999999999976543

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-49  Score=334.97  Aligned_cols=211  Identities=23%  Similarity=0.300  Sum_probs=185.4

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +||+||.|+.||+|.|++++..... +. .  
T Consensus         1 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-vvvl~g~g~~F~aG~Dl~~~~~~~~-~~-~--   73 (255)
T PRK06563          1 VSRERRGHVLLIGLDRPA--KRNAFDSAMLDDLALALGEYEADDELR-VAVLFAHGEHFTAGLDLADVAPKLA-AG-G--   73 (255)
T ss_pred             CeEEEECCEEEEEECCcc--cccCCCHHHHHHHHHHHHHHhhCCCcE-EEEEECCCCCCcCCcCHHHHhhccc-cc-h--
Confidence            568899999999999997  899999999999999999999999999 9999999999999999998754211 11 1  


Q ss_pred             HHHHHH-HHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           82 VHYMFK-SFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        82 ~~~~~~-~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                       ..+.. ....+...+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| 
T Consensus        74 -~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-  149 (255)
T PRK06563         74 -FPFPEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADN-TRFAQLEVQRGI-LPFGGATLRFPQAAG-  149 (255)
T ss_pred             -hhhhhhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCC-CEEeChhhhcCC-CCCccHHHHHHHHhh-
Confidence             11111 1222333588999999999999999999999999999999987 899999999999 67776 568999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL  226 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ..++++++++|++++|+||+++||||+++|+ +++.+++.++++++++.+  +.+++.+|+.++...
T Consensus       150 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~~  213 (255)
T PRK06563        150 WGNAMRYLLTGDEFDAQEALRLGLVQEVVPP-GEQLERAIELAERIARAA--PLGVQATLASARAAV  213 (255)
T ss_pred             HHHHHHHHHcCCCcCHHHHHHcCCCcEeeCH-HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999998 889999999999999998  899999999987654

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.6e-49  Score=336.92  Aligned_cols=218  Identities=20%  Similarity=0.200  Sum_probs=192.5

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      +.++++++|++|+||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|++||+|.|++++..... +.....
T Consensus        19 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~eL~~~l~~~~~d~~vr-~vVltg~g~~FsaG~Dl~~~~~~~~-~~~~~~   94 (277)
T PRK08258         19 FLWEVDDGVATITLNRPE--RKNPLTFESYAELRDLFRELVYADDVK-AVVLTGAGGNFCSGGDVHEIIGPLT-KMDMPE   94 (277)
T ss_pred             eEEEEECCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEeCCCCCcccccCHHHHhcccc-ccChhH
Confidence            567889999999999998  899999999999999999999999999 9999999999999999998743211 011222


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+.+.+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+.+|++| ++++++++| .
T Consensus        95 ~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl~p~~~g~~~~l~~~vG-~  172 (277)
T PRK08258         95 LLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPS-AKTAFLFTRVGLAGADMGACALLPRIIG-Q  172 (277)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCC-CEEeccccccCcCCCCchHHHHHHHHhC-H
Confidence            3344556678899999999999999999999999999999999999987 899999999999434555 679999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      .++++++++|++++|+||+++||||+++|+ +++.+++.++++++++.|  +.+++.+|+.++.....
T Consensus       173 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~  237 (277)
T PRK08258        173 GRASELLYTGRSMSAEEGERWGFFNRLVEP-EELLAEAQALARRLAAGP--TFAHGMTKTMLHQEWDM  237 (277)
T ss_pred             HHHHHHHHcCCCCCHHHHHHcCCCcEecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhccC
Confidence            999999999999999999999999999997 889999999999999998  99999999999875433

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.8e-49  Score=335.40  Aligned_cols=215  Identities=22%  Similarity=0.315  Sum_probs=192.1

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++|+||||+  +.|++|.+|+.+|.+++++++.|++++ +|||+|.| ++||+|.|++++..... +  ..
T Consensus        13 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~~FcaG~Dl~~~~~~~~-~--~~   86 (269)
T PRK06127         13 LLAEKTGGLGRITFNNPA--RHNAMSLDMWEALPQALAAAEDDDAIR-VVVLTGAGEKAFVSGADISQFEESRS-D--AE   86 (269)
T ss_pred             eEEEEECCEEEEEecCCC--ccCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEEeCCCCceecCcCHHHHhhccc-c--hH
Confidence            578889999999999998  899999999999999999999999999 99999998 79999999998764211 1  12


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChh-hHHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDY-CAALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~-g~~~l~~~~g~  159 (243)
                      ....+...++.++.++..+||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++ +++++++++| 
T Consensus        87 ~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-  163 (269)
T PRK06127         87 AVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAED-SRFGIPAARLGL-GYGYDGVKNLVDLVG-  163 (269)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCC-CEeeCchhhhCC-CCCccHHHHHHHHhC-
Confidence            22344556677889999999999999999999999999999999999987 899999999999 4655 4679999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      ..++++++++|++++|+||+++||||+|||+ +++++++.+++++++..+  +.+++.+|+.++.....
T Consensus       164 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~~~  229 (269)
T PRK06127        164 PSAAKDLFYTARRFDAAEALRIGLVHRVTAA-DDLETALADYAATIAGNA--PLTLRAAKRAIAELLKD  229 (269)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCCCEeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999999997 889999999999999988  89999999999776433

>PRK05869 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=2.3e-49  Score=326.68  Aligned_cols=205  Identities=21%  Similarity=0.285  Sum_probs=185.0

Q ss_pred             eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHH
Q 026137            7 HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMF   86 (243)
Q Consensus         7 ~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~   86 (243)
                      +++|++|+||||   +.|++|.+|+.+|.+++++++.|++++ +||+||.|++||+|+|++++... .    ........
T Consensus        15 ~~~i~~itlnrp---~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~-~----~~~~~~~~   85 (222)
T PRK05869         15 DAGLATLLLSRP---PTNALTRQVYREIVAAANELGRRDDVA-AVILYGGHEIFSAGDDMPELRTL-S----AQEADTAA   85 (222)
T ss_pred             cCCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCcCcCcCHHHHhcc-C----hhhHHHHH
Confidence            589999999999   569999999999999999999999999 99999999999999999987642 1    11122334


Q ss_pred             HHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCHHHHHH
Q 026137           87 KSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSATARRD  165 (243)
Q Consensus        87 ~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~~~a~~  165 (243)
                      +.+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| ..++++
T Consensus        86 ~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~ig-~~~a~~  162 (222)
T PRK05869         86 RVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDN-VKFGATEILAGL-APSGDGMARLTRAAG-PSRAKE  162 (222)
T ss_pred             HHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCC-CEEcCchhccCC-CCCccHHHHHHHHhC-HHHHHH
Confidence            55678999999999999999999999999999999999999987 899999999999 56665 578999999 999999


Q ss_pred             HHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137          166 VLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL  226 (243)
Q Consensus       166 l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ++++|++++|+||+++||||+++|+ +++++++.+++++++..+  +.+++.+|+.++..+
T Consensus       163 l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~ia~~~--~~a~~~~K~~~~~~~  220 (222)
T PRK05869        163 LVFSGRFFDAEEALALGLIDEMVAP-DDVYDAAAAWARRFLDGP--PHALAAAKAGISDVY  220 (222)
T ss_pred             HHHcCCCcCHHHHHHCCCCCEeeCc-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHh
Confidence            9999999999999999999999998 889999999999999998  999999999997643

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.1e-49  Score=334.23  Aligned_cols=216  Identities=26%  Similarity=0.325  Sum_probs=189.3

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++ |++++ +|||+|.|++||+|.|++++..... ......
T Consensus         6 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~~~~~~-d~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~   80 (262)
T PRK08140          6 ILLAIEAGVATLTLNRPD--KLNSFTREMHRELREALDQVE-DDGAR-ALLLTGAGRGFCAGQDLADRDVTPG-GAMPDL   80 (262)
T ss_pred             EEEEeECCEEEEEecCCc--ccCCCCHHHHHHHHHHHHHhc-CCCce-EEEEECCCCCcccCcChHHHhcccc-ccchhh
Confidence            577889999999999998  899999999999999999999 99999 9999999999999999998753210 000111


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+...+..++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus        81 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~vG-~  157 (262)
T PRK08140         81 GESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARS-ASFIQAFVKIGL-VPDSGGTWFLPRLVG-M  157 (262)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCC-CEEeccccccCC-CCCccHHHHHHHHhC-H
Confidence            1122334566888999999999999999999999999999999999987 899999999999 56665 679999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      .++++++++|++++|+||+++||||+|+|+ +++++++.++++++++.+  +.++..+|+.++.....
T Consensus       158 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~ia~~~--~~a~~~~K~~l~~~~~~  222 (262)
T PRK08140        158 ARALGLALLGEKLSAEQAEQWGLIWRVVDD-AALADEAQQLAAHLATQP--TRGLALIKQAMNASATN  222 (262)
T ss_pred             HHHHHHHHcCCCcCHHHHHHcCCccEeeCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhhC
Confidence            999999999999999999999999999998 789999999999999998  89999999999866444

>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=1.6e-50  Score=330.22  Aligned_cols=213  Identities=21%  Similarity=0.289  Sum_probs=189.3

Q ss_pred             eeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHH
Q 026137            3 TSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERV   82 (243)
Q Consensus         3 ~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~   82 (243)
                      ....+++|+.|+||||.  ..|+++..++.||.+++..++.|++++ ++|+||.|+.||+|+|++++.....    .+  
T Consensus        40 ~~~~d~~I~lItlNRP~--~~Nal~~~~m~eL~~A~~~~e~D~s~~-viVltG~gksFcsG~Dl~e~~~~~~----~~--  110 (290)
T KOG1680|consen   40 LVGEDNGIALITLNRPK--ALNALCRATMLELAEAFKDFESDDSVG-VIVLTGSGKSFCSGADLKEMKKDEF----QD--  110 (290)
T ss_pred             EeecCCCeEEEEeCChH--HhccccHHHHHHHHHHHHHhhccCccc-EEEEEcCCCccccccCHHHHhhccc----cc--
Confidence            34568899999999998  899999999999999999999999999 9999999999999999999987322    11  


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCHH
Q 026137           83 HYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSAT  161 (243)
Q Consensus        83 ~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~~  161 (243)
                       -....+.+.+..+.+.+||+|++|||+|+|||+||++.||+|||+++ ++|++|+.++|+ +|++| +++|+|.+| ..
T Consensus       111 -~~~~~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~-Akfg~~~~~~Gi-~p~~GGT~rl~r~vG-~s  186 (290)
T KOG1680|consen  111 -VSDGIFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEG-AKFGFFEIRMGI-IPSWGGTQRLPRIVG-KS  186 (290)
T ss_pred             -cccccccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCC-CeecccccccCC-ccCCCchhhHHHHhC-hH
Confidence             12223444555566899999999999999999999999999999987 999999999999 78776 579999999 99


Q ss_pred             HHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137          162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       162 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~  231 (243)
                      +|+++++||++++|+||+++|||++|||. ++++++|.+|+++|++.|  +.+++..|++++......+.
T Consensus       187 ~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~-~~~l~eAv~l~~~Ia~~~--~~~v~~~K~svn~~~e~~l~  253 (290)
T KOG1680|consen  187 RALEMILTGRRLGAQEAKKIGLVNKVVPS-GDALGEAVKLAEQIAKNS--PLVVRADKESVNAAYETTLF  253 (290)
T ss_pred             HHHHHHHhcCcccHHHHHhCCceeEeecc-hhHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHhhccHH
Confidence            99999999999999999999999999998 889999999999999999  99999999999885444433

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.8e-49  Score=335.21  Aligned_cols=218  Identities=23%  Similarity=0.297  Sum_probs=191.2

Q ss_pred             CceeeeeCCEEEEEEcCCCCCCCCCCCH-HHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCC-c-c
Q 026137            1 MCTSEKHGDVFVLTLTGSSNVDEHRLGP-SAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSR-T-G   77 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~-~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~-~-~   77 (243)
                      +|.++++++|++||||||+  +.|++|. +|+.+|.+++++++.|++++ +|||+|.|++||+|.|++++...... . .
T Consensus         4 ~v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~~l~~~l~~~~~d~~vr-~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (266)
T PRK09245          4 FLLVERDGHIVTLTMNRPE--TRNALSDNDAVDALVAACAAINADRSVR-AVILTGAGTAFSSGGNVKDMRARVGAFGGS   80 (266)
T ss_pred             ceEEEEECCEEEEEECCcc--cccCCChHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCcccCcCHHHHhhcccccccc
Confidence            3678899999999999997  8899995 99999999999999999999 99999999999999999988542110 0 0


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHH
Q 026137           78 ARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREK  156 (243)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~  156 (243)
                      .......+...+.+++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +++++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~  158 (266)
T PRK09245         81 PADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASET-ARFAESFVKLGL-IPGDGGAWLLPRI  158 (266)
T ss_pred             chhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCC-CEEcccccccCc-CCCcchhhhHHHH
Confidence            01111223344677888999999999999999999999999999999999987 899999999999 57766 5789999


Q ss_pred             hCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          157 VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      +| ..++++++++|++++|+||+++||||+++|+ +++++++.++++++++.|  +.+++.+|+.+++...
T Consensus       159 vG-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~~  225 (266)
T PRK09245        159 IG-MARAAEMAFTGDAIDAATALEWGLVSRVVPA-DQLLPAARALAERIAANP--PHALRLTKRLLREGQH  225 (266)
T ss_pred             hh-HHHHHHHHHcCCCcCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhc
Confidence            99 9999999999999999999999999999997 889999999999999998  8999999999987543

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.2e-49  Score=332.54  Aligned_cols=211  Identities=21%  Similarity=0.356  Sum_probs=190.2

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||   +.|++|.+|+.+|.+++++++.|++++ +|||+|.|++||+|.|++++.....    ...
T Consensus         4 i~~~~~~~v~~itl~rp---~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~~~----~~~   75 (257)
T PRK07658          4 LSVRVEDHVAVITLNHP---PANALSSQVLHELSELLDQVEKDDNVR-VVVIHGEGRFFSAGADIKEFTSVTE----AEQ   75 (257)
T ss_pred             EEEEeeCCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCceEeCcCHHHHhccCc----hhh
Confidence            67888999999999999   459999999999999999999999999 9999999999999999998754211    122


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+....++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus        76 ~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-~  152 (257)
T PRK07658         76 ATELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATES-AKLGLPELNLGL-IPGFAGTQRLPRYVG-K  152 (257)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCC-CcccCcccccCC-CCCCcHHHHHHHHhC-H
Confidence            2334456678899999999999999999999999999999999999987 899999999999 67776 579999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL  226 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~  226 (243)
                      .++++++++|++++++||+++||||+++|+ +++.+++.++++++++.+  +.+++.+|+.++...
T Consensus       153 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~  215 (257)
T PRK07658        153 AKALEMMLTSEPITGAEALKWGLVNGVFPE-ETLLDDAKKLAKKIAGKS--PATTRAVLELLQTTK  215 (257)
T ss_pred             HHHHHHHHcCCCcCHHHHHHcCCcCeecCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence            999999999999999999999999999997 899999999999999998  899999999997653

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.3e-49  Score=331.94  Aligned_cols=210  Identities=23%  Similarity=0.341  Sum_probs=188.8

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++||||||   +.|++|.+|+.+|.++++.++.|++++ +|||+|.| ++||+|.|++++... .    ..
T Consensus         5 v~~~~~~~v~~itlnrp---~~Nal~~~~~~~l~~al~~~~~d~~vr-vvVl~g~g~~~F~aG~Dl~~~~~~-~----~~   75 (258)
T PRK09076          5 LDLEIDGHVAILTLNNP---PANTWTADSLQALKQLVLELNADKDVY-ALVITGDGEKFFSAGADLNLFADG-D----KA   75 (258)
T ss_pred             EEEEEECCEEEEEECCC---CcCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCceEeCcCHHHHhhc-C----hh
Confidence            57788999999999999   459999999999999999999999999 99999998 789999999987542 1    11


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                      ....+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        76 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~iG-  152 (258)
T PRK09076         76 VAREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQ-AQMALPEASVGL-LPCAGGTQNLPWLVG-  152 (258)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCC-CEeeCcccccCC-CCCccHHHHHHHHhC-
Confidence            12234455678889999999999999999999999999999999999987 999999999999 57665 678999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL  226 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ..++++++++|++++|+||+++|||++|+|+ +++.+++.+++++++..+  +.++..+|+.++...
T Consensus       153 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~  216 (258)
T PRK09076        153 EGWAKRMILCGERVDAATALRIGLVEEVVEK-GEAREAALALAQKVANQS--PSAVAACKTLIQAAR  216 (258)
T ss_pred             HHHHHHHHHcCCcCCHHHHHHCCCCceecCc-hhHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998 889999999999999998  899999999997653

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.3e-49  Score=334.82  Aligned_cols=212  Identities=21%  Similarity=0.283  Sum_probs=189.2

Q ss_pred             ceeee-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEK-HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.+++ +++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|++||+|.|++++.....  . ..
T Consensus        13 i~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~--~-~~   86 (268)
T PRK07327         13 LRFDRPPPGVLEIVLNGPG--ALNAADARMHRELADIWRDVDRDPDVR-VVLIRGEGKAFSAGGDLALVEEMAD--D-FE   86 (268)
T ss_pred             EEEEecCCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHhhhCCCce-EEEEECCCCCcccccCHHHHhhccC--c-HH
Confidence            45676 5789999999997  789999999999999999999999999 9999999999999999998764211  1 12


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                      ....+...+.+++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| 
T Consensus        87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-  163 (268)
T PRK07327         87 VRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKD-ARIIDGHTRLGV-AAGDHAAIVWPLLCG-  163 (268)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCC-CEEeCcccccCC-CCCcchhhHHHHHhC-
Confidence            22233455678889999999999999999999999999999999999987 899999999999 56655 579999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD  225 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~  225 (243)
                      ..++++++++|++++|+||+++|||++++|+ +++++++.++|+++++.+  +.+++.+|+.++..
T Consensus       164 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~  226 (268)
T PRK07327        164 MAKAKYYLLLCEPVSGEEAERIGLVSLAVDD-DELLPKALEVAERLAAGS--QTAIRWTKYALNNW  226 (268)
T ss_pred             HHHHHHHHHcCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998 889999999999999998  99999999999864

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.1e-49  Score=333.15  Aligned_cols=209  Identities=21%  Similarity=0.292  Sum_probs=188.0

Q ss_pred             ceeee-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEK-HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      +.+++ +++|++|+||||+  +.|++|.+|+.+|.++++.++.|++++ +|||||.|++||+|.|++++...   +. . 
T Consensus         9 ~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~---~~-~-   80 (261)
T PRK08138          9 VLLERPADGVALLRLNRPE--ARNALNMEVRQQLAEHFTELSEDPDIR-AIVLTGGEKVFAAGADIKEFATA---GA-I-   80 (261)
T ss_pred             EEEEEccCCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhhCCCee-EEEEECCCCCeeCCcCHHHHhcc---ch-h-
Confidence            45666 7899999999997  889999999999999999999999999 99999999999999999987642   11 1 


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                        ..+...+++++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| 
T Consensus        81 --~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-  155 (261)
T PRK08138         81 --EMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGES-ASFGQPEIKVGL-MPGAGGTQRLVRAVG-  155 (261)
T ss_pred             --HHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCC-CEeeCccccccc-CCCCcHHHHHHHHhC-
Confidence              123345677888999999999999999999999999999999999987 899999999999 67775 579999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL  226 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ..++++++++|++++++||+++||||+++|+ +++.+++.++++++++.+  +.++..+|+.++...
T Consensus       156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~  219 (261)
T PRK08138        156 KFKAMRMALTGCMVPAPEALAIGLVSEVVED-EQTLPRALELAREIARMP--PLALAQIKEVVLAGA  219 (261)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCCcEecCc-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998 789999999999999988  899999999997654

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=100.00  E-value=3e-49  Score=333.54  Aligned_cols=211  Identities=20%  Similarity=0.327  Sum_probs=186.1

Q ss_pred             ceeee-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchH
Q 026137            2 CTSEK-HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGAR   79 (243)
Q Consensus         2 i~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~   79 (243)
                      |.+++ +++|++||||||+  +.|++|.+|+.+|.++++.++.|++++ +|||||.| ++||+|+|++++..... .. .
T Consensus         4 i~~~~~~~~v~~itlnrp~--~~Nal~~~~~~el~~~l~~~~~d~~vr-~vVltg~g~~~F~aG~Dl~~~~~~~~-~~-~   78 (259)
T TIGR01929         4 IRYEKSTDGIAKITINRPQ--VRNAFRPLTVKEIIQALDDAREDPDIG-VVILTGAGDKAFCSGGDQKVRGDYGY-ID-D   78 (259)
T ss_pred             EEEEEcCCCEEEEEecCCc--cccCCCHHHHHHHHHHHHHHhhCCCeE-EEEEEeCCCCceEeCcChHhHhhccc-cc-h
Confidence            45777 8999999999998  889999999999999999999999999 99999999 89999999997643211 01 1


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCCh-hhHHHHHHHhC
Q 026137           80 ERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPD-YCAALFREKVG  158 (243)
Q Consensus        80 ~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~-~g~~~l~~~~g  158 (243)
                      ....  ...+.+++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|+ +++.++++++|
T Consensus        79 ~~~~--~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~G~-~p~~~~~~~l~~~vG  154 (259)
T TIGR01929        79 SGVH--RLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAEN-ARFGQTGPKVGS-FDGGYGSSYLARIVG  154 (259)
T ss_pred             hhHH--HHHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCC-CEecCccccccc-CCCccHHHHHHHHhH
Confidence            1111  113456788899999999999999999999999999999999987 899999999999 455 45789999999


Q ss_pred             CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137          159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD  225 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~  225 (243)
                       +.++++++++|++++|+||+++||||+++|+ +++.+++.++++++++.|  +.+++.+|+.++..
T Consensus       155 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~  217 (259)
T TIGR01929       155 -QKKAREIWFLCRQYDAEQALDMGLVNTVVPL-ADLEKETVRWCREILQKS--PMAIRMLKAALNAD  217 (259)
T ss_pred             -HHHHHHHHHhCCccCHHHHHHcCCcccccCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence             9999999999999999999999999999997 889999999999999998  99999999999765

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.7e-49  Score=330.48  Aligned_cols=209  Identities=20%  Similarity=0.245  Sum_probs=187.7

Q ss_pred             ceeeeeC---CEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcch
Q 026137            2 CTSEKHG---DVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGA   78 (243)
Q Consensus         2 i~~~~~~---~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~   78 (243)
                      |.+++++   +|++||||||+  +.|++|.+|+++|.+++++++.|++++ +||++|.|++||+|.|++++.....  . 
T Consensus         5 i~~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~~l~~~~~d~~vr-~vVl~g~g~~FcaG~Dl~~~~~~~~--~-   78 (251)
T PRK06023          5 ILVERPGAHPGVQVIRFNRPE--KKNAITRAMYATMAKALKAADADDAIR-AHVFLGTEGCFSAGNDMQDFLAAAM--G-   78 (251)
T ss_pred             EEEEeecCcCcEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCeecCcCHHHHhhccc--c-
Confidence            5677776   49999999998  899999999999999999999999999 9999999999999999998764211  1 


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHh
Q 026137           79 RERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKV  157 (243)
Q Consensus        79 ~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~  157 (243)
                      .   ..+...+++++.++.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| +.++++++
T Consensus        79 ~---~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~~  153 (251)
T PRK06023         79 G---TSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPR-SLFRTPFVDLAL-VPEAGSSLLAPRLM  153 (251)
T ss_pred             c---hhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCC-CEecCcccccCC-CCCchHHHHHHHHH
Confidence            1   112345667888999999999999999999999999999999999987 999999999999 67776 46899999


Q ss_pred             CCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137          158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD  225 (243)
Q Consensus       158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~  225 (243)
                      | ..++++++++|++++|+||+++|||++++|. +++.+++.+++++++..+  +.++..+|+.++..
T Consensus       154 g-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~  217 (251)
T PRK06023        154 G-HQRAFALLALGEGFSAEAAQEAGLIWKIVDE-EAVEAETLKAAEELAAKP--PQALQIARDLMRGP  217 (251)
T ss_pred             h-HHHHHHHHHhCCCCCHHHHHHcCCcceeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhc
Confidence            9 9999999999999999999999999999998 889999999999999998  99999999999754

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=100.00  E-value=4.5e-49  Score=335.18  Aligned_cols=216  Identities=19%  Similarity=0.302  Sum_probs=189.6

Q ss_pred             eeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCC----cc-
Q 026137            3 TSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSR----TG-   77 (243)
Q Consensus         3 ~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~----~~-   77 (243)
                      .++.+++|++|+||||+  +.|++|.+|+.+|.++++.++.|++++ +|||||.|++||+|+|++++......    +. 
T Consensus        11 ~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-vvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~   87 (275)
T PLN02664         11 QKSPNSSVFHLNLNRPS--QRNALSLDFFTEFPKALSSLDQNPNVS-VIILSGAGDHFCSGIDLKTLNSISEQSSSGDRG   87 (275)
T ss_pred             EecCCCCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEECCCCceeeCcChHHhhhcccccccccch
Confidence            34568999999999998  899999999999999999999999999 99999999999999999987542110    00 


Q ss_pred             h-HHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHH
Q 026137           78 A-RERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFRE  155 (243)
Q Consensus        78 ~-~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~  155 (243)
                      . ......+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ .|++| ++++++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~  165 (275)
T PLN02664         88 RSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSED-AFFSVKEVDLAI-TADLGTLQRLPS  165 (275)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCC-CEeccHHHhhCC-CCCccHHHHHHH
Confidence            0 1122334455678888999999999999999999999999999999999987 999999999999 57666 578999


Q ss_pred             HhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137          156 KVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL  226 (243)
Q Consensus       156 ~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ++| ..++++++++|++++|+||+++||||++||+.+++.+.+.++++++++.+  +.+++.+|+.+++..
T Consensus       166 ~vG-~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~--p~a~~~~K~~l~~~~  233 (275)
T PLN02664        166 IVG-YGNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKS--PLAVTGTKAVLLRSR  233 (275)
T ss_pred             HhC-HHHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence            999 99999999999999999999999999999854789999999999999998  999999999998654

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.2e-49  Score=332.01  Aligned_cols=214  Identities=26%  Similarity=0.367  Sum_probs=192.4

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      +.++++++|++|+||||+  +.|++|.+|+.+|.+++++++.|++++ +||++|.|+.||+|.|++++.+... .. ...
T Consensus         5 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVl~g~g~~F~~G~Dl~~~~~~~~-~~-~~~   79 (260)
T PRK07511          5 LLSRREGSTLVLTLSNPG--ARNALHPDMYAAGIEALNTAERDPSIR-AVVLTGAGGFFCAGGNLNRLLENRA-KP-PSV   79 (260)
T ss_pred             eEEEeECCEEEEEECCcc--cccCCCHHHHHHHHHHHHHhccCCCeE-EEEEECCCCCcccCcCHHHHhhccc-cc-chh
Confidence            567889999999999997  899999999999999999999999999 9999999999999999998864211 01 122


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+...+++++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| .
T Consensus        80 ~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vg-~  156 (260)
T PRK07511         80 QAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARD-AKFVMAYVKVGL-TPDGGGSWFLARALP-R  156 (260)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCC-CEEeccccccCc-CCCchHHHHHHHHhC-H
Confidence            3345567788999999999999999999999999999999999999988 899999999999 57766 578999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL  226 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~  226 (243)
                      .++++++++|++++++||+++||||+++++ +++.+++.++++++++.+  +.++..+|+.++...
T Consensus       157 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~l~~~~--~~~~~~~K~~l~~~~  219 (260)
T PRK07511        157 QLATELLLEGKPISAERLHALGVVNRLAEP-GQALAEALALADQLAAGS--PNALARIKSLIADAP  219 (260)
T ss_pred             HHHHHHHHhCCCCCHHHHHHcCCccEeeCc-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhh
Confidence            999999999999999999999999999998 789999999999999988  899999999997654

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=100.00  E-value=2.9e-49  Score=331.39  Aligned_cols=215  Identities=29%  Similarity=0.478  Sum_probs=198.6

Q ss_pred             eeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHH
Q 026137            3 TSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERV   82 (243)
Q Consensus         3 ~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~   82 (243)
                      .++++++|++|+||+|+  +.|++|.+++.+|.++++.++.|++++ +||++|.+++||+|.|++++...     .....
T Consensus         1 ~~~~~~~v~~i~ln~p~--~~N~l~~~~~~~l~~~l~~~~~d~~v~-vvv~~~~~~~F~~G~Dl~~~~~~-----~~~~~   72 (245)
T PF00378_consen    1 KYEIEDGVATITLNRPE--KRNALNPEMLDELEEALDEAEADPDVK-VVVISGGGKAFCAGADLKEFLNS-----DEEEA   72 (245)
T ss_dssp             EEEEETTEEEEEEECGG--GTTEBSHHHHHHHHHHHHHHHHSTTES-EEEEEESTSESBESB-HHHHHHH-----HHHHH
T ss_pred             CEEEECCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhcCCcc-EEEEeecccccccccchhhhhcc-----ccccc
Confidence            37899999999999998  999999999999999999999999999 99999999999999999999874     25566


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChh-hHHHHHHHhCCHH
Q 026137           83 HYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDY-CAALFREKVGSAT  161 (243)
Q Consensus        83 ~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~-g~~~l~~~~g~~~  161 (243)
                      ..+.+.+++++.++..+||||||+|||+|+|+|++++++||+||++++ ++|++||+++|+ +|++ ++.++++++| ..
T Consensus        73 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~G~-~p~~g~~~~l~r~~g-~~  149 (245)
T PF00378_consen   73 REFFRRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAED-AKFGFPEVRLGI-FPGAGGTFRLPRLIG-PS  149 (245)
T ss_dssp             HHHHHHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETT-TEEETGGGGGTS-SSTSTHHHHHHHHHH-HH
T ss_pred             cccchhhccccccchhhhhheeecccccccccccccccccceEEeecc-cceeeeecccCc-ccccccccccceeee-cc
Confidence            778889999999999999999999999999999999999999999988 889999999999 6755 4679999999 99


Q ss_pred             HHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137          162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       162 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~  231 (243)
                      ++++++++|++++|+||+++||||+++|+ +++.+++.+++++++..+  +.+++.+|+.+++.+...++
T Consensus       150 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~~~~~~~~~~~  216 (245)
T PF00378_consen  150 RARELLLTGEPISAEEALELGLVDEVVPD-EELDEEALELAKRLAAKP--PSALRATKKALNRALEQSLE  216 (245)
T ss_dssp             HHHHHHHHTCEEEHHHHHHTTSSSEEESG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHSHHH
T ss_pred             cccccccccccchhHHHHhhcceeEEcCc-hhhhHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHhhHH
Confidence            99999999999999999999999999998 679999999999999998  99999999999987555444

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=9.6e-49  Score=328.64  Aligned_cols=213  Identities=21%  Similarity=0.321  Sum_probs=191.2

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      +.++++++|++|+||+|+  +.|++|.+|+.+|.+++++++.|++++ +||++|.|++||+|.|++++.....  . .  
T Consensus         7 ~~~~~~~~v~~i~ln~p~--~~Nal~~~~~~~L~~~l~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~~~--~-~--   78 (249)
T PRK07110          7 ELREVEEGIAQVTMQDRV--NKNAFSDELCDQLHEAFDTIAQDPRYK-VVILTGYPNYFATGGTQEGLLSLQT--G-K--   78 (249)
T ss_pred             EEEEeeCCEEEEEecCCC--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCeeCCcChHHHhhccc--h-h--
Confidence            567889999999999998  899999999999999999999999999 9999999999999999998764211  1 1  


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                       ..+..  ++++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| +
T Consensus        79 -~~~~~--~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~~g-~  152 (249)
T PRK07110         79 -GTFTE--ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRE-SVYTANFMKYGF-TPGMGATAILPEKLG-L  152 (249)
T ss_pred             -hhHhh--HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCC-CEecCchhccCC-CCCchHHHHHHHHhC-H
Confidence             11222  57889999999999999999999999999999999999988 899999999999 57665 679999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~  231 (243)
                      .++++++++|++++++||+++|||++|+++ +++.+++.++++++++.|  +.+++.+|+.+++.....++
T Consensus       153 ~~a~~llltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~  220 (249)
T PRK07110        153 ALGQEMLLTARYYRGAELKKRGVPFPVLPR-AEVLEKALELARSLAEKP--RHSLVLLKDHLVADRRRRLP  220 (249)
T ss_pred             HHHHHHHHcCCccCHHHHHHcCCCeEEeCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhhccHH
Confidence            999999999999999999999999999997 889999999999999998  89999999999876555444

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.3e-49  Score=330.87  Aligned_cols=212  Identities=23%  Similarity=0.329  Sum_probs=192.6

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+|+.+|.++++.++.|++++ +||++|.|++||+|.|++++.....    .. 
T Consensus         7 i~~~~~~~v~~i~lnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~----~~-   78 (259)
T PRK06688          7 LLVELEDGVLTITINRPD--KKNALTAAMYQALADALEAAATDPAVR-VVVLTGAGRAFSAGGDIKDFPKAPP----KP-   78 (259)
T ss_pred             eEEEEECCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCccCccCHHHHhccCc----ch-
Confidence            578899999999999998  899999999999999999999999999 9999999999999999998865311    11 


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                       ..+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| .
T Consensus        79 -~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~~G-~  154 (259)
T PRK06688         79 -PDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASES-AKFSLPFAKLGL-CPDAGGSALLPRLIG-R  154 (259)
T ss_pred             -HHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCC-CEecCchhhcCC-CCCcchhhHHHHHhh-H
Confidence             234566788999999999999999999999999999999999999987 999999999999 67765 579999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      .++++++++|++++|+||+++||||+++|+ +++.+++.++++++++.+  +.++..+|+.+++....
T Consensus       155 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-~~l~~~a~~~a~~i~~~~--~~a~~~~K~~l~~~~~~  219 (259)
T PRK06688        155 ARAAEMLLLGEPLSAEEALRIGLVNRVVPA-AELDAEADAQAAKLAAGP--ASALRYTKRAINAATLT  219 (259)
T ss_pred             HHHHHHHHhCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhhC
Confidence            999999999999999999999999999997 889999999999999988  88999999999875443

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.2e-49  Score=330.41  Aligned_cols=207  Identities=22%  Similarity=0.292  Sum_probs=183.2

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|++||+|.|++++...   +. ...
T Consensus         5 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~---~~-~~~   77 (254)
T PRK08252          5 VLVERRGRVLIITINRPE--ARNAVNAAVAQGLAAALDELDADPDLS-VGILTGAGGTFCAGMDLKAFARG---ER-PSI   77 (254)
T ss_pred             EEEEEECCEEEEEECCCc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCceEcCcCHHHHhcc---cc-hhh
Confidence            678899999999999997  889999999999999999999999999 99999999999999999988642   11 111


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                         ....+..++.  ..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus        78 ---~~~~~~~~~~--~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vg-~  149 (254)
T PRK08252         78 ---PGRGFGGLTE--RPPRKPLIAAVEGYALAGGFELALACDLIVAARD-AKFGLPEVKRGL-VAAGGGLLRLPRRIP-Y  149 (254)
T ss_pred             ---hHHHHHHHHH--hcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCC-CEEeCchhhcCC-CCCchHHHHHHHHcC-H
Confidence               1112222322  4799999999999999999999999999999987 899999999999 56665 679999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL  226 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~  226 (243)
                      .++++++++|++++|+||+++||||+|+|+ +++++++.++++++++.|  +.++..+|+.++...
T Consensus       150 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~  212 (254)
T PRK08252        150 HIAMELALTGDMLTAERAHELGLVNRLTEP-GQALDAALELAERIAANG--PLAVAASKRIVVESG  212 (254)
T ss_pred             HHHHHHHHcCCccCHHHHHHcCCcceecCc-chHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhh
Confidence            999999999999999999999999999998 889999999999999998  999999999997653

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.4e-49  Score=331.10  Aligned_cols=213  Identities=22%  Similarity=0.298  Sum_probs=187.6

Q ss_pred             ceeeee-CCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEKH-GDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~~-~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      +.++++ ++|++|+||||+  +.|++|.+|+.+|.++++.++.|++++ +|||||.|++||+|.|++++..... .. ..
T Consensus         6 ~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~-~~   80 (262)
T PRK07468          6 IRIAVDARGVATLTLNRPE--KHNALSARMIAELTTAARRLAADAAVR-VVVLTGAGKSFCAGGDLGWMRAQMT-AD-RA   80 (262)
T ss_pred             EEEEEcCCcEEEEEEcCcc--cccCCCHHHHHHHHHHHHHHhcCCCeE-EEEEECCCCcccCCcCHHHHHhhcc-cc-hh
Confidence            456775 689999999998  899999999999999999999999999 9999999999999999998753211 11 11


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCH
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSA  160 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~  160 (243)
                      ........+++++.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+.++.+++| .
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~~~~vG-~  157 (262)
T PRK07468         81 TRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSG-ARFGLTETRLGL-IPATISPYVVARMG-E  157 (262)
T ss_pred             hHHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCC-CEEeCchhccCC-CcccchhhHHhhcc-H
Confidence            11122345677889999999999999999999999999999999999987 899999999999 68777666777899 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD  225 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~  225 (243)
                      .++++++++|++++|+||+++||||+++|+ +++.+++.++++++++.+  +.++..+|+.++..
T Consensus       158 ~~a~~lll~g~~~~a~eA~~~Glv~~v~~~-~~l~~~~~~~a~~l~~~~--~~a~~~~K~~l~~~  219 (262)
T PRK07468        158 ANARRVFMSARLFDAEEAVRLGLLSRVVPA-ERLDAAVEAEVTPYLSCA--PGAVAAAKALVRAL  219 (262)
T ss_pred             HHHHHHHHhCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhh
Confidence            999999999999999999999999999997 889999999999999998  99999999998764

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.4e-48  Score=322.55  Aligned_cols=219  Identities=23%  Similarity=0.351  Sum_probs=195.3

Q ss_pred             CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      +|.++++++|++||||+|   +.|++|.+|+.+|.++++.++  ++++ +||+||.|++||+|.|++++...      ..
T Consensus         4 ~i~~~~~~~v~~itln~~---~~Nal~~~~~~~l~~~l~~~~--~~~~-vvvl~g~g~~F~~G~Dl~~~~~~------~~   71 (229)
T PRK06213          4 LVSYTLEDGVATITLDDG---KVNALSPAMIDALNAALDQAE--DDRA-VVVITGQPGIFSGGFDLKVMTSG------AQ   71 (229)
T ss_pred             eEEEEecCCEEEEEeCCC---CCCCCCHHHHHHHHHHHHHhh--ccCc-EEEEeCCCCceEcCcCHHHHhcc------hH
Confidence            367888999999999998   789999999999999999988  5678 99999999999999999987642      12


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCH
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSA  160 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~  160 (243)
                      ....+...+.+++.++.++||||||+|||+|+|+|++|+++||+||+++++++|++||+++|+.+|+++..++++++| .
T Consensus        72 ~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g-~  150 (229)
T PRK06213         72 AAIALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLT-P  150 (229)
T ss_pred             hHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcC-H
Confidence            223455667888999999999999999999999999999999999999865889999999999656666778999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHhhhHH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGLDIK  235 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~~~~~  235 (243)
                      ..+++++++|++++|+||+++||||+++|+ +++.+++.++++++++.+  +.++..+|+.+++.....++....
T Consensus       151 ~~a~~lll~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~~~~~  222 (229)
T PRK06213        151 SAFQRAVINAEMFDPEEAVAAGFLDEVVPP-EQLLARAQAAARELAGLN--MGAHAATKLKVRAAALEAIRAAIE  222 (229)
T ss_pred             HHHHHHHHcCcccCHHHHHHCCCceeccCh-HHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHhchh
Confidence            999999999999999999999999999997 889999999999999998  999999999999887777765443

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=100.00  E-value=1.4e-48  Score=329.94  Aligned_cols=212  Identities=21%  Similarity=0.315  Sum_probs=191.4

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +||++|.| ++||+|.|++++....     ..
T Consensus         6 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~~~~~~~d~~v~-~vvl~g~g~~~F~aG~Dl~~~~~~~-----~~   77 (260)
T PRK05809          6 VILEKEGHIAVVTINRPK--ALNALNSETLKELDTVLDDIENDDNVY-AVILTGAGEKAFVAGADISEMKDLN-----EE   77 (260)
T ss_pred             EEEEEeCCEEEEEECCCc--ccCCCCHHHHHHHHHHHHHHhcCCCcE-EEEEEcCCCCceeeCcChHhHhccC-----hH
Confidence            567889999999999997  899999999999999999999999999 99999999 9999999999876421     11


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                      ....+....++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| 
T Consensus        78 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-  154 (260)
T PRK05809         78 EGRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEK-AKFGQPEVGLGI-TPGFGGTQRLARIVG-  154 (260)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCC-CEEeCcccccCC-CCCccHHHHHHHHhC-
Confidence            22234455677889999999999999999999999999999999999987 999999999999 67776 578999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      ..++++++++|++++|+||+++||||+++|+ +++.+++.+++++++..+  +.++..+|+.+++...
T Consensus       155 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  219 (260)
T PRK05809        155 PGKAKELIYTGDMINAEEALRIGLVNKVVEP-EKLMEEAKALANKIAANA--PIAVKLCKDAINRGMQ  219 (260)
T ss_pred             HHHHHHHHHhCCCCCHHHHHHcCCCCcccCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999997 899999999999999998  8999999999986543

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-48  Score=330.06  Aligned_cols=212  Identities=21%  Similarity=0.347  Sum_probs=191.2

Q ss_pred             ceeee-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchH
Q 026137            2 CTSEK-HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGAR   79 (243)
Q Consensus         2 i~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~   79 (243)
                      |.+++ +++|++|+||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.| ++||+|.|++++... .    .
T Consensus         5 v~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~v~-~vVl~g~g~~~F~aG~Dl~~~~~~-~----~   76 (260)
T PRK07657          5 ISVDYVTPHVVKITLNRPR--AANALSLALLEELQNILTQINEEANVR-VVILTGAGEKAFCAGADLKERAGM-N----E   76 (260)
T ss_pred             EEEEEccCCEEEEEEeCCc--ccCCCCHHHHHHHHHHHHHHHhCCCeE-EEEEecCCCCceEcCcChHhhhcC-C----h
Confidence            56775 7899999999997  899999999999999999999999999 99999998 599999999987542 1    1


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhC
Q 026137           80 ERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVG  158 (243)
Q Consensus        80 ~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g  158 (243)
                      .....+...+++++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus        77 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~vG  154 (260)
T PRK07657         77 EQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAES-ASLGLTETTLAI-IPGAGGTQRLPRLIG  154 (260)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCC-CEEcCchhccCc-CCCccHHHHHHHHhC
Confidence            223344566788899999999999999999999999999999999999987 899999999999 57666 678999999


Q ss_pred             CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                       ..++++++++|++++|+||+++||||+++|+ +++++++.+++++++..+  +.++..+|+.++....
T Consensus       155 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~~  219 (260)
T PRK07657        155 -VGRAKELIYTGRRISAQEAKEIGLVEFVVPA-HLLEEKAIEIAEKIASNG--PIAVRQAKEAISNGIQ  219 (260)
T ss_pred             -HHHHHHHHHhCCCCCHHHHHHcCCCCeecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhcc
Confidence             9999999999999999999999999999998 889999999999999998  9999999999986543

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.7e-49  Score=331.29  Aligned_cols=214  Identities=19%  Similarity=0.237  Sum_probs=185.9

Q ss_pred             CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      +|.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|++||+|.|++++.....  .+..
T Consensus         6 ~i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~--~~~~   80 (263)
T PRK07799          6 HALVEQRGHTLIVTMNRPE--ARNALSTEMLRIMVDAWDRVDNDPDIR-SCILTGAGGAFCAGMDLKAATKKPP--GDSF   80 (263)
T ss_pred             eEEEEEECCEEEEEECCCc--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCccccccCHHHHhhccc--cchh
Confidence            3678899999999999997  889999999999999999999999999 9999999999999999998865211  1010


Q ss_pred             HHHHH-HHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhC
Q 026137           81 RVHYM-FKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVG  158 (243)
Q Consensus        81 ~~~~~-~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g  158 (243)
                      ....+ ...+.. +.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus        81 ~~~~~~~~~~~~-~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG  157 (263)
T PRK07799         81 KDGSYDPSRIDA-LLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGES-AKFGISEAKWSL-FPMGGSAVRLVRQIP  157 (263)
T ss_pred             hhhhhhhhHHHH-HHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCC-CEecCcccccCc-CCCccHHHHHHHHhC
Confidence            00001 122233 33578999999999999999999999999999999987 899999999999 67766 568999999


Q ss_pred             CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137          159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL  226 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~  226 (243)
                       ..++++++++|++++|+||+++||||++||+ +++.+++.++++++++.|  +.++..+|+.++...
T Consensus       158 -~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~~~~~~--~~a~~~~K~~l~~~~  221 (263)
T PRK07799        158 -YTVACDLLLTGRHITAAEAKEIGLIGHVVPD-GQALDKALELAELINANG--PLAVQAILRTIRETE  221 (263)
T ss_pred             -HHHHHHHHHcCCCCCHHHHHHcCCccEecCc-chHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHhh
Confidence             9999999999999999999999999999998 789999999999999998  899999999997654

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-48  Score=329.71  Aligned_cols=212  Identities=21%  Similarity=0.347  Sum_probs=190.1

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.++++++ .|++++ +||++|.|++||+|.|++++.+...    ...
T Consensus         8 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~-~d~~vr-vvvl~g~g~~F~aG~Dl~~~~~~~~----~~~   79 (260)
T PRK07659          8 VVVKYEGRVATIMLNRPE--ALNALDEPMLKELLQALKEV-AESSAH-IVVLRGNGRGFSAGGDIKMMLSSND----ESK   79 (260)
T ss_pred             EEEEeeCCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHh-cCCCee-EEEEECCCCCcccccCHHHHhhccC----chh
Confidence            578889999999999997  89999999999999999999 588999 9999999999999999998864211    222


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+...+++++.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~~~vg-~  156 (260)
T PRK07659         80 FDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADIS-AKLAMNFIGIGL-IPDGGGHFFLQKRVG-E  156 (260)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCC-CEEcCchhhcCC-CCCCchhhhHHHhcC-H
Confidence            3345567788999999999999999999999999999999999999987 899999999999 57665 679999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      .++++++++|++++|+||+++||||++| + +++.+++.++++++++.|  +.++..+|+.++.....
T Consensus       157 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~-~~~~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~~~  220 (260)
T PRK07659        157 NKAKQIIWEGKKLSATEALDLGLIDEVI-G-GDFQTAAKQKISEWLQKP--LKAMIETKQIYCELNRS  220 (260)
T ss_pred             HHHHHHHHhCCccCHHHHHHcCChHHHh-h-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhcC
Confidence            9999999999999999999999999999 6 789999999999999998  89999999999865433

>PLN02600 enoyl-CoA hydratase

Probab=100.00  E-value=1.5e-48  Score=327.88  Aligned_cols=206  Identities=21%  Similarity=0.351  Sum_probs=186.9

Q ss_pred             eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecC-CCccccCCChhhHHHcCCCcchHHHHHHH
Q 026137            7 HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSH-GKFFSNGFDLAWAQAAGSRTGARERVHYM   85 (243)
Q Consensus         7 ~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~-g~~F~~G~D~~~~~~~~~~~~~~~~~~~~   85 (243)
                      +++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||. |++||+|.|++++... .    ......+
T Consensus         2 ~~~v~~itlnrp~--~~Nal~~~~~~~l~~~~~~~~~d~~vr-~vVl~g~~g~~F~aG~Dl~~~~~~-~----~~~~~~~   73 (251)
T PLN02600          2 DSGIVELRLDRPE--AKNAIGKEMLRGLRSAFEKIQADASAR-VVMLRSSVPGVFCAGADLKERRKM-S----PSEVQKF   73 (251)
T ss_pred             CCcEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEecCCCCceeeCcCHHHHhcc-C----hHHHHHH
Confidence            5789999999998  899999999999999999999999999 9999998 5899999999987542 1    1223345


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCHHHHH
Q 026137           86 FKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSATARR  164 (243)
Q Consensus        86 ~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~~~a~  164 (243)
                      ...++.++.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| ..+++
T Consensus        74 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~~G-~~~a~  150 (251)
T PLN02600         74 VNSLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEE-AVFGLPETGLAI-IPGAGGTQRLPRLVG-RSRAK  150 (251)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCC-CEEeCcccccCc-CCCchHHHHHHHHhC-HHHHH
Confidence            566788889999999999999999999999999999999999987 999999999999 67666 579999999 99999


Q ss_pred             HHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137          165 DVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL  226 (243)
Q Consensus       165 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~  226 (243)
                      +++++|++++++||+++||||+++|+ +++++++.++++++++.+  +.++..+|+.++...
T Consensus       151 ~l~ltg~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~  209 (251)
T PLN02600        151 ELIFTGRRIGAREAASMGLVNYCVPA-GEAYEKALELAQEINQKG--PLAIKMAKKAINEGS  209 (251)
T ss_pred             HHHHhCCccCHHHHHHcCCCcEeeCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHc
Confidence            99999999999999999999999998 889999999999999998  999999999998653

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-48  Score=332.57  Aligned_cols=216  Identities=20%  Similarity=0.307  Sum_probs=188.3

Q ss_pred             ceeee-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCc--ch
Q 026137            2 CTSEK-HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRT--GA   78 (243)
Q Consensus         2 i~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~--~~   78 (243)
                      |.+++ +++|++|+||||+  +.|++|.+|+.+|.+++++++.|++++ +|||+|.|++||+|.|++++.......  .+
T Consensus        11 v~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~~l~~~~~d~~vr-vvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~   87 (276)
T PRK05864         11 VLVDHPRPEIALITLNRPE--RMNSMAFDVMVPLKEALAEVSYDNSVR-VVVLTGAGRGFSSGADHKSAGVVPHVEGLTR   87 (276)
T ss_pred             eEEeeecCCEEEEEecCCc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCeecCcchhhhhcccccccccc
Confidence            56676 7899999999998  899999999999999999999999999 999999999999999999874311000  00


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHh
Q 026137           79 RERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKV  157 (243)
Q Consensus        79 ~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~  157 (243)
                      ..........+++++.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+++|++| ++++++++
T Consensus        88 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl~p~~~g~~~~l~~~v  166 (276)
T PRK05864         88 PTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSS-AYFRAAGINNGLTASELGLSYLLPRAI  166 (276)
T ss_pred             hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCC-CEecCcccccCCCCCCcchheehHhhh
Confidence            1111223455677888999999999999999999999999999999999987 999999999999433665 56899999


Q ss_pred             CCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137          158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD  225 (243)
Q Consensus       158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~  225 (243)
                      | ..++++++++|++++|+||+++|||++++++ +++++++.++|++++..|  +.++..+|+.++..
T Consensus       167 G-~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~  230 (276)
T PRK05864        167 G-SSRAFEIMLTGRDVDAEEAERIGLVSRQVPD-EQLLDTCYAIAARMAGFS--RPGIELTKRTLWSG  230 (276)
T ss_pred             C-HHHHHHHHHcCCccCHHHHHHcCCcceeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence            9 9999999999999999999999999999998 889999999999999998  89999999998764

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-48  Score=328.29  Aligned_cols=210  Identities=24%  Similarity=0.294  Sum_probs=187.7

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||||+  +.|++|.+|+++|.++++.++.|++++ +|||||.|++||+|+|++++..... .. .  
T Consensus         5 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~~~-~~-~--   77 (249)
T PRK05870          5 VLLDVDDGVALITVNDPD--RRNAVTAEMSAQLRAAVAAAEADPDVH-ALVVTGAGKAFCAGADLTALGAAPG-RP-A--   77 (249)
T ss_pred             EEEEccCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhcCCCee-EEEEECCCCCeecCcChHHHhcccc-cc-h--
Confidence            577889999999999998  899999999999999999999999999 9999999999999999998865211 11 1  


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                       ......+.+++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| +
T Consensus        78 -~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~~G-~  153 (249)
T PRK05870         78 -EDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPK-ALFDARFQKLGL-HPGGGATWMLQRAVG-P  153 (249)
T ss_pred             -HHHHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCC-CEEeCcccccCc-CCCCcceeeHHhhhC-H
Confidence             223345566778899999999999999999999999999999999987 899999999999 67766 468999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      .++++++++|++++|+||+++||||+++   +++.+++.++++++++.+  +.++..+|+.++....
T Consensus       154 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv---~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~~~  215 (249)
T PRK05870        154 QVARAALLFGMRFDAEAAVRHGLALMVA---DDPVAAALELAAGPAAAP--RELVLATKASMRATAS  215 (249)
T ss_pred             HHHHHHHHhCCccCHHHHHHcCCHHHHH---hhHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999   468999999999999998  9999999999987543

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-48  Score=329.25  Aligned_cols=208  Identities=25%  Similarity=0.322  Sum_probs=183.2

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++|+||||+  +.|++|.+|+.+|.+++++++.|++++ +||++|.| ++||+|.|++++.....  . ..
T Consensus         6 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~~F~aG~Dl~~~~~~~~--~-~~   79 (259)
T PRK06494          6 STVERKGHVTIVTLNRPE--VMNALHLDAHFELEEVFDDFAADPEQW-VAIVTGAGDKAFSAGNDLKEQAAGGK--R-GW   79 (259)
T ss_pred             eEEEeECCEEEEEEcCcc--ccCCCCHHHHHHHHHHHHHHhhCCCcE-EEEEEcCCCCceeccccHHhHhhcCc--c-hh
Confidence            577889999999999997  789999999999999999999999999 99999998 79999999998754211  0 11


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                      .    ...+..+ ..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        80 ~----~~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vg-  151 (259)
T PRK06494         80 P----ESGFGGL-TSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAEN-ATFALPEPRVGL-AALAGGLHRLPRQIG-  151 (259)
T ss_pred             h----hHHHHHH-HHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCC-CEEeCcccccCC-CCCchHHHHHHHHcC-
Confidence            1    1122233 3346899999999999999999999999999999987 899999999999 56665 679999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL  226 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ..++++++++|++++|+||+++||||+++|+ +++++++.+++++++..+  +.++..+|+.+++..
T Consensus       152 ~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~  215 (259)
T PRK06494        152 LKRAMGMILTGRRVTAREGLELGFVNEVVPA-GELLAAAERWADDILACS--PLSIRASKQAVYRGL  215 (259)
T ss_pred             HHHHHHHHHcCCcCCHHHHHHcCCCcEecCH-hHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999998 889999999999999998  999999999998653

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-48  Score=328.53  Aligned_cols=208  Identities=22%  Similarity=0.258  Sum_probs=182.0

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +||+||.|++||+|.|++++....   . .. 
T Consensus         5 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvltg~g~~FcaG~Dl~~~~~~~---~-~~-   76 (254)
T PRK08259          5 VRVERNGPVTTVILNRPE--VRNAVDGPTAAALADAFRAFDADDAAS-VAVLWGAGGTFCAGADLKAVGTGR---G-NR-   76 (254)
T ss_pred             EEEEEECCEEEEEecCCc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCccCCcChHHHhccc---c-hh-
Confidence            567889999999999997  889999999999999999999999999 999999999999999999875421   1 11 


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                      ....  ....+...+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|.+| ++++++++| .
T Consensus        77 ~~~~--~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~iG-~  151 (254)
T PRK08259         77 LHPS--GDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEED-AVFGVFCRRWGV-PLIDGGTVRLPRLIG-H  151 (254)
T ss_pred             hhhh--hcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCC-CEecCcccccCC-CCCccHHHHHHHHhC-H
Confidence            1100  0111222334799999999999999999999999999999987 899999999999 56655 678999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD  225 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~  225 (243)
                      .++++++++|++++|+||+++||||+|||+ +++++++.++|+++++.+  +.+++.+|+.++..
T Consensus       152 ~~a~~lll~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~  213 (254)
T PRK08259        152 SRAMDLILTGRPVDADEALAIGLANRVVPK-GQARAAAEELAAELAAFP--QTCLRADRLSALEQ  213 (254)
T ss_pred             HHHHHHHHcCCccCHHHHHHcCCCCEeeCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence            999999999999999999999999999998 889999999999999998  99999999999764

>PLN02888 enoyl-CoA hydratase

Probab=100.00  E-value=2.7e-48  Score=328.54  Aligned_cols=209  Identities=21%  Similarity=0.302  Sum_probs=186.1

Q ss_pred             ceeee-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEK-HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.++. +++|++||||||+  +.|++|.+|+.+|.++++.++.|++++ +||+||.|++||+|+|++++.....    ..
T Consensus        11 i~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~----~~   83 (265)
T PLN02888         11 ILVPKSRNGIATITINRPK--ALNALTRPMMVELAAAFKRLDEDDSVK-VIILTGSGRAFCSGVDLTAAEEVFK----GD   83 (265)
T ss_pred             EEEEeccCCEEEEEEcCCC--cccCCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCcccCCCCHHHHHhhcc----ch
Confidence            56665 7899999999997  899999999999999999999999999 9999999999999999998754211    11


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                          ......+++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| 
T Consensus        84 ----~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-  156 (265)
T PLN02888         84 ----VKDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRG-AKFIDTHAKFGI-FPSWGLSQKLSRIIG-  156 (265)
T ss_pred             ----hhHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCC-CEecCccccccC-CCCccHhhHHHHHhC-
Confidence                1112355677889999999999999999999999999999999987 899999999999 67766 578999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      ..++++++++|++++|+||+++||||++|++ +++.+++.++++++++.+  +.+++.+|+.++....
T Consensus       157 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  221 (265)
T PLN02888        157 ANRAREVSLTAMPLTAETAERWGLVNHVVEE-SELLKKAREVAEAIIKNN--QGMVLRYKSVINDGLK  221 (265)
T ss_pred             HHHHHHHHHhCCccCHHHHHHcCCccEeeCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999998 789999999999999998  8999999999986543

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=100.00  E-value=2.1e-48  Score=328.79  Aligned_cols=209  Identities=22%  Similarity=0.349  Sum_probs=185.5

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++||||||   +.|++|.+|+.+|.+++++++.|++++ +||+||.| ++||+|.|++++.+...  . ..
T Consensus         5 i~~~~~~~v~~itlnrp---~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvl~g~g~~~F~aG~Dl~~~~~~~~--~-~~   77 (261)
T PRK03580          5 LHTTRNGSILEITLDRP---KANAIDAKTSFAMGEVFLNFRDDPELR-VAIITGAGEKFFSAGWDLKAAAEGEA--P-DA   77 (261)
T ss_pred             EEEEEECCEEEEEECCc---cccCCCHHHHHHHHHHHHHHHhCCCcE-EEEEEeCCCCceecccCHHHHhccCc--c-hh
Confidence            57889999999999999   669999999999999999999999999 99999998 79999999998764211  1 11


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                         .+.......+.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| 
T Consensus        78 ---~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~vg-  151 (261)
T PRK03580         78 ---DFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADN-ASFALPEAKLGI-VPDSGGVLRLPKRLP-  151 (261)
T ss_pred             ---hhhhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCC-CEEeCcccccCc-CCCccHHHHHHHHhC-
Confidence               11122345677899999999999999999999999999999999987 899999999999 56666 569999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL  226 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ..++++++++|++++|+||+++|||++++|+ +++.+++.++++++++.+  +.+++.+|+.++...
T Consensus       152 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~  215 (261)
T PRK03580        152 PAIANEMVMTGRRMDAEEALRWGIVNRVVPQ-AELMDRARELAQQLVNSA--PLAIAALKEIYRETS  215 (261)
T ss_pred             HHHHHHHHHhCCccCHHHHHHcCCCcEecCH-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999997 899999999999999998  999999999997653

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.4e-48  Score=328.54  Aligned_cols=217  Identities=24%  Similarity=0.351  Sum_probs=190.3

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcC-CCCEEEEEecCCCccccCCChhhHHHcCCCcc-hH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEA-TPGSAFITTSHGKFFSNGFDLAWAQAAGSRTG-AR   79 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~-~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~-~~   79 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.++++.++.|+ +++ +||+||.|++||+|.|++++........ ..
T Consensus         6 v~~~~~~~i~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~~v~-vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   82 (266)
T PRK05981          6 VTLDFDGGVAILTLDHPE--VMNAVSIDMLGGLAEALDAIEDGKAEVR-CLVLTGAGRGFCTGANLQGRGSGGRESDSGG   82 (266)
T ss_pred             EEEEeECCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhcCCCceE-EEEEeCCCCCcccccCHHhhhcccccccccc
Confidence            678889999999999997  899999999999999999999876 599 9999999999999999998754211000 00


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhC
Q 026137           80 ERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVG  158 (243)
Q Consensus        80 ~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g  158 (243)
                      .....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||.++|+ +|++| ++++++++|
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~~e~~lG~-~p~~g~~~~l~~~vg  160 (266)
T PRK05981         83 DAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARS-AYFLQAFRRIGL-VPDGGSTWLLPRLVG  160 (266)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCC-CEEechHhhcCC-CCCccHHHHHHHHhH
Confidence            112234455678899999999999999999999999999999999999987 899999999999 67766 578999999


Q ss_pred             CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                       +..+++++++|++++|+||+++|||++++|+ +++++++.+++++++..|  +.++..+|+.++....
T Consensus       161 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~l~~~~--~~a~~~~K~~~~~~~~  225 (266)
T PRK05981        161 -KARAMELSLLGEKLPAETALQWGLVNRVVDD-AELMAEAMKLAHELANGP--TVALGLIRKLYWDSPE  225 (266)
T ss_pred             -HHHHHHHHHhCCCcCHHHHHHcCCceEeeCH-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhh
Confidence             9999999999999999999999999999998 889999999999999988  8899999999976543

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.9e-48  Score=325.65  Aligned_cols=207  Identities=21%  Similarity=0.264  Sum_probs=184.3

Q ss_pred             eeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHH
Q 026137            4 SEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVH   83 (243)
Q Consensus         4 ~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~   83 (243)
                      -+++++|++||||||   +.|++|.+|+.+|.++++.++.|++++ +|||||.|++||+|.|++++...   +. .....
T Consensus         6 ~~~~~~v~~itlnrp---~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~G~~F~aG~Dl~~~~~~---~~-~~~~~   77 (249)
T PRK07938          6 TTPEPGIAEVTVDYP---PVNALPSAGWFALADAITAAGADPDTR-VVVLRAEGRGFNAGVDIKELQAT---PG-FTALI   77 (249)
T ss_pred             cccCCCEEEEEECCC---CcccCCHHHHHHHHHHHHHhhcCCCeE-EEEEECCCCceecCcCHHHHhhc---cc-hhHHH
Confidence            345889999999999   569999999999999999999999999 99999999999999999987542   11 12222


Q ss_pred             HHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHH
Q 026137           84 YMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATAR  163 (243)
Q Consensus        84 ~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a  163 (243)
                      .....+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +  +++.++++++| ..++
T Consensus        78 ~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~-a~f~~pe~~~G~-~--g~~~~l~~~vg-~~~a  152 (249)
T PRK07938         78 DANRGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDD-ATFGLPEVDRGA-L--GAATHLQRLVP-QHLM  152 (249)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCC-CEeeCccceecC-c--hhHHHHHHhcC-HHHH
Confidence            23345677888999999999999999999999999999999999987 899999999998 4  44568999999 9999


Q ss_pred             HHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137          164 RDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL  226 (243)
Q Consensus       164 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ++++++|++++|+||+++|||+++||+ +++++++.+++++++..+  +.++..+|+.++...
T Consensus       153 ~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~  212 (249)
T PRK07938        153 RALFFTAATITAAELHHFGSVEEVVPR-DQLDEAALEVARKIAAKD--TRVIRAAKEALNGID  212 (249)
T ss_pred             HHHHHhCCcCCHHHHHHCCCccEEeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhc
Confidence            999999999999999999999999997 899999999999999998  999999999997653

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=100.00  E-value=2.7e-48  Score=329.96  Aligned_cols=211  Identities=19%  Similarity=0.309  Sum_probs=185.9

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.++++.++.|++++ +||+||.| ++||+|.|++++..... .. ..
T Consensus        15 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVltg~g~~~F~aG~Dl~~~~~~~~-~~-~~   89 (273)
T PRK07396         15 ILYKSADGIAKITINRPE--VRNAFRPKTVKEMIDAFADARDDDNIG-VIILTGAGDKAFCSGGDQKVRGYGGY-VD-DD   89 (273)
T ss_pred             eEEEecCCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEEeCCCCceEeCcChhhhhcccc-cc-hh
Confidence            567889999999999998  899999999999999999999999999 99999998 69999999998743110 00 11


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChh-hHHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDY-CAALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~-g~~~l~~~~g~  159 (243)
                      ....+  ...+++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++ ++.++++++| 
T Consensus        90 ~~~~~--~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~~~~~~l~~~vG-  164 (273)
T PRK07396         90 GVPRL--NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADN-AIFGQTGPKVGS-FDGGYGASYLARIVG-  164 (273)
T ss_pred             hhhhh--HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCC-cEEecccccccc-cCCchHHHHHHHHhh-
Confidence            11111  2345777899999999999999999999999999999999987 899999999999 5655 5679999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD  225 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~  225 (243)
                      ..++++++++|++++|+||+++||||+|||+ +++++++.++|+++++.+  +.+++.+|+.++..
T Consensus       165 ~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~  227 (273)
T PRK07396        165 QKKAREIWFLCRQYDAQEALDMGLVNTVVPL-ADLEKETVRWCREMLQNS--PMALRCLKAALNAD  227 (273)
T ss_pred             HHHHHHHHHhCCCcCHHHHHHcCCcCeecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence            9999999999999999999999999999997 899999999999999998  99999999999764

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.5e-48  Score=326.12  Aligned_cols=209  Identities=22%  Similarity=0.284  Sum_probs=187.4

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||   +.|++|.+|+.+|.+++++++.|++++ +|||+|.|++||+|.|++++..... .  ...
T Consensus         6 i~~~~~~~v~~itlnrp---~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVl~g~g~~FcaG~Dl~~~~~~~~-~--~~~   78 (257)
T PRK06495          6 LKLEVSDHVAVVTLDNP---PVNALSRELRDELIAVFDEISERPDVR-VVVLTGAGKVFCAGADLKGRPDVIK-G--PGD   78 (257)
T ss_pred             EEEEeeCCEEEEEECCC---ccccCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCCcccCcCHHhHhhccC-C--chh
Confidence            56788999999999999   569999999999999999999999999 9999999999999999998754211 1  112


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSAT  161 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~  161 (243)
                      ...+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ .  +++.++++++| ..
T Consensus        79 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~--~~~~~l~~~~g-~~  153 (257)
T PRK06495         79 LRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASEN-AVFGLPEIDVGL-A--GGGKHAMRLFG-HS  153 (257)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCC-CEeeChhhccCc-c--ccHHHHHHHhC-HH
Confidence            2233455678889999999999999999999999999999999999987 999999999999 3  34567999999 99


Q ss_pred             HHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137          162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD  225 (243)
Q Consensus       162 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~  225 (243)
                      ++++++++|++++|+||+++|||++++|+ +++.+++.++++++++.|  +.+++.+|+.++..
T Consensus       154 ~a~~lll~g~~~~a~eA~~~GLv~~vv~~-~~~~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~  214 (257)
T PRK06495        154 LTRRMMLTGYRVPAAELYRRGVIEACLPP-EELMPEAMEIAREIASKS--PLATRLAKDALNTI  214 (257)
T ss_pred             HHHHHHHcCCeeCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHH
Confidence            99999999999999999999999999997 889999999999999998  99999999999765

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=100.00  E-value=2.9e-48  Score=327.78  Aligned_cols=208  Identities=16%  Similarity=0.302  Sum_probs=186.6

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecC--CCccccCCChhhHHHcCCCcchH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSH--GKFFSNGFDLAWAQAAGSRTGAR   79 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~--g~~F~~G~D~~~~~~~~~~~~~~   79 (243)
                      +.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|+ ++ +||+||.  |++||+|.|++++.....  . .
T Consensus         6 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~-v~-~vvltg~~~~~~FcaG~Dl~~~~~~~~--~-~   78 (261)
T PRK11423          6 VNVVTINKIATITFNNPA--KRNALSKVLIDDLMQALSDLNRPE-IR-VVILRAPSGSKVWSAGHDIHELPSGGR--D-P   78 (261)
T ss_pred             eEEEeECCEEEEEEcCcc--ccCCCCHHHHHHHHHHHHHHhcCC-ce-EEEEECCCCCCeeECCcCHHHHhhccc--c-H
Confidence            678889999999999998  899999999999999999999887 99 9999986  389999999998754211  1 1


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChh-hHHHHHHHhC
Q 026137           80 ERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDY-CAALFREKVG  158 (243)
Q Consensus        80 ~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~-g~~~l~~~~g  158 (243)
                         ..+...+.+++.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++ |+.++++++|
T Consensus        79 ---~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~~~~g~~~~l~~~vg  153 (261)
T PRK11423         79 ---LSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAAST-STFAMTPANLGV-PYNLSGILNFTNDAG  153 (261)
T ss_pred             ---HHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCC-CEecCchhhcCC-CCCccHHHHHHHHhH
Confidence               123455678899999999999999999999999999999999999987 899999999999 4555 5779999999


Q ss_pred             CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137          159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD  225 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~  225 (243)
                       +.++++++++|++++|+||+++||||+|||+ +++++++.++++++++.+  +.+++.+|+.++..
T Consensus       154 -~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~~~~~  216 (261)
T PRK11423        154 -FHIVKEMFFTASPITAQRALAVGILNHVVEV-EELEDFTLQMAHHISEKA--PLAIAVIKEQLRVL  216 (261)
T ss_pred             -HHHHHHHHHcCCCcCHHHHHHcCCcCcccCH-HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhh
Confidence             9999999999999999999999999999997 889999999999999998  89999999999753

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=100.00  E-value=9.6e-48  Score=326.97  Aligned_cols=218  Identities=18%  Similarity=0.290  Sum_probs=191.3

Q ss_pred             ceeee-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC--CccccCCChhhHHHcCCCcch
Q 026137            2 CTSEK-HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG--KFFSNGFDLAWAQAAGSRTGA   78 (243)
Q Consensus         2 i~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g--~~F~~G~D~~~~~~~~~~~~~   78 (243)
                      |.+++ +++|++||||+|   +.|++|.+|+.+|.+++++++.|++++ +||+||.|  ++||+|.|++++....  .. 
T Consensus        13 i~~~~~~~~Va~itlnr~---~~Nal~~~~~~eL~~al~~~~~d~~vr-~vVltg~g~~~~FcaG~Dl~~~~~~~--~~-   85 (278)
T PLN03214         13 VRVDRRPGGIAVVWLAKE---PVNSMTLAMWRSLDDALTALENDPTVR-GVVFASGLRRDVFTAGNDIAELYAPK--TS-   85 (278)
T ss_pred             eEEEEcCCCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHHcCCCce-EEEEeCCCCCCcccCccCHHHHhccc--cc-
Confidence            56777 689999999998   789999999999999999999999999 99999987  7999999999875311  11 


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHh
Q 026137           79 RERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKV  157 (243)
Q Consensus        79 ~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~  157 (243)
                      ......+....++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+++|+++ ++++++++
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~lGl~~p~~~~~~~l~~~~  164 (278)
T PLN03214         86 AARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTE-GTMGLNEVALGIPVPKFWARLFMGRVI  164 (278)
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCC-CEecCcHHHhCCCCCChhHHHHHHHhc
Confidence            1122233344567888999999999999999999999999999999999987 899999999999446655 57999999


Q ss_pred             CCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137          158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~  231 (243)
                      | ..++++++++|++++++||+++||||+|||+ +++++++.++++++++.+  +.++..+|+.+++.....++
T Consensus       165 G-~~~a~~llltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~~~~l~  234 (278)
T PLN03214        165 D-RKVAESLLLRGRLVRPAEAKQLGLIDEVVPA-AALMEAAASAMERALKLP--SAARAATKALLREEFSAAWE  234 (278)
T ss_pred             C-HHHHHHHHHcCCccCHHHHHHcCCCcEecCh-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhHHHHHH
Confidence            9 9999999999999999999999999999998 889999999999999998  99999999999877655444

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=100.00  E-value=5e-48  Score=324.47  Aligned_cols=207  Identities=22%  Similarity=0.338  Sum_probs=182.4

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||+|   +.|++|.+|+.+|.+++++++.|++++ +||+||.|++||+|.|++++..       .. 
T Consensus         3 v~~~~~~~v~~itlnrp---~~Nal~~~~~~~l~~~l~~~~~~~~vr-~vVl~g~g~~FcaG~Dl~~~~~-------~~-   70 (251)
T TIGR03189         3 VWLERDGKLLRLRLARP---KANIVDAAMIAALSAALGEHLEDSALR-AVLLDAEGPHFSFGASVAEHMP-------DQ-   70 (251)
T ss_pred             EEEEeeCCEEEEEeCCC---CcCCCCHHHHHHHHHHHHHHHcCCCce-EEEEECCCCceecCcChhhhCc-------hh-
Confidence            56788999999999999   569999999999999999999999999 9999999999999999997532       11 


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSAT  161 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~  161 (243)
                      .......+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ .|++++.++++++| ..
T Consensus        71 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~Gl-~p~~~~~~l~~~vg-~~  147 (251)
T TIGR03189        71 CAAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPD-AKLGQPEIVLGV-FAPAASCLLPERMG-RV  147 (251)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCC-CEEeCchhhcCC-CCCchHHHHHHHhC-HH
Confidence            1123345677888999999999999999999999999999999999987 899999999999 56667789999999 99


Q ss_pred             HHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHH-HHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137          162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRL-GKQLAGRKCTGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       162 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~-a~~~~~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      ++++++++|++++|+||+++|||++++++ ++  +++.++ ++++++.|  +.+++.+|+.++.....
T Consensus       148 ~a~~l~ltg~~~~a~eA~~~Glv~~v~~~-~~--~~a~~~~a~~la~~~--p~a~~~~K~~l~~~~~~  210 (251)
T TIGR03189       148 AAEDLLYSGRSIDGAEGARIGLANAVAED-PE--NAALAWFDEHPAKLS--ASSLRFAVRAARLGMNE  210 (251)
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCcceecCc-HH--HHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhcc
Confidence            99999999999999999999999999986 43  466666 68999998  89999999999765443

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=100.00  E-value=5.4e-48  Score=325.75  Aligned_cols=214  Identities=27%  Similarity=0.400  Sum_probs=191.9

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      +.++.+++|++||||||+  +.|++|.+|+.+|.++++.++.|++++ +||+||.|++||+|+|++++... . .  ...
T Consensus         7 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vvltg~g~~FsaG~Dl~~~~~~-~-~--~~~   79 (257)
T COG1024           7 ILVEREDGIAVITLNRPE--KLNALNLEMLDELAEALDEAEADPDVR-VVVLTGAGKAFSAGADLKELLSP-E-D--GNA   79 (257)
T ss_pred             eEEEeeCCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhhCCCeE-EEEEECCCCceecccCHHHHhcc-c-c--hhH
Confidence            566778889999999998  889999999999999999999999999 99999999999999999998741 1 1  122


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCCh-hhHHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPD-YCAALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~-~g~~~l~~~~g~~  160 (243)
                      ...+....+.++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+ +|+ +++.++++.+| .
T Consensus        80 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~-a~f~~pe~~iGl-~Pg~g~~~~l~r~~G-~  156 (257)
T COG1024          80 AENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAED-AKFGLPEVNLGL-LPGDGGTQRLPRLLG-R  156 (257)
T ss_pred             HHHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCC-cEecCccccccc-CCCCcHHHHHHHhcC-H
Confidence            2256677788999999999999999999999999999999999999987 999999999999 675 44679999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      .+++++++||+.++++||+++|||+++++..+++++.+.+++++++. +  +.++..+|+.++.....
T Consensus       157 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~-~--~~a~~~~k~~~~~~~~~  221 (257)
T COG1024         157 GRAKELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA-P--PLALAATKRLVRAALEA  221 (257)
T ss_pred             HHHHHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc-C--HHHHHHHHHHHHHhhhc
Confidence            99999999999999999999999999999757999999999999998 5  88999999998876443

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.3e-48  Score=331.69  Aligned_cols=215  Identities=19%  Similarity=0.215  Sum_probs=188.7

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCc-----
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRT-----   76 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~-----   76 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.++++.++.|++++ +|||||.|++||+|.|++++.......     
T Consensus         6 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (296)
T PRK08260          6 IRYDVADGIATITLNRPD--KLNAFTVTMARELIEAFDAADADDAVR-AVIVTGAGRAFCAGADLSAGGNTFDLDAPRTP   82 (296)
T ss_pred             EEEeeeCCEEEEEeCCCc--ccCCCCHHHHHHHHHHHHHHhcCCCeE-EEEEECCCCCeecCcChHHhhhcccccccccc
Confidence            577889999999999998  899999999999999999999999999 999999999999999999875310000     


Q ss_pred             -------chHHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh
Q 026137           77 -------GARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC  149 (243)
Q Consensus        77 -------~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g  149 (243)
                             ........+...+.+++.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl-~p~~g  160 (296)
T PRK08260         83 VEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTA-ARFGFVFGRRGI-VPEAA  160 (296)
T ss_pred             cccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCC-CEEecchhhcCc-CCCcc
Confidence                   000111223344567888999999999999999999999999999999999987 899999999999 67776


Q ss_pred             -HHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcC-CCCcchHHHHHHhhchh
Q 026137          150 -AALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR-KCTGEVYAEIRKSLYPD  225 (243)
Q Consensus       150 -~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~-~~~~~~~~~~K~~l~~~  225 (243)
                       ++++++++| ..++++++++|++++|+||+++|||++|||+ +++++++.++++++++. +  +.++..+|+.+++.
T Consensus       161 ~~~~l~r~vG-~~~A~~llltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~i~~~~~--~~a~~~~K~~l~~~  234 (296)
T PRK08260        161 SSWFLPRLVG-LQTALEWVYSGRVFDAQEALDGGLVRSVHPP-DELLPAARALAREIADNTS--PVSVALTRQMMWRM  234 (296)
T ss_pred             hhhhHHHhhC-HHHHHHHHHcCCccCHHHHHHCCCceeecCH-HHHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhc
Confidence             468999999 9999999999999999999999999999998 88999999999999985 6  88999999999765

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.7e-48  Score=327.73  Aligned_cols=218  Identities=23%  Similarity=0.307  Sum_probs=188.2

Q ss_pred             ceeeeeC-CEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcch-H
Q 026137            2 CTSEKHG-DVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGA-R   79 (243)
Q Consensus         2 i~~~~~~-~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~-~   79 (243)
                      |.+++++ +|++||||||+  +.|++|.+|+.+|.++++.++.|++++ +|||+|.|++||+|.|++++......... .
T Consensus         7 i~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~~l~~~~~d~~vr-~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~   83 (272)
T PRK06210          7 VLYEVADSGVAVITLNRPD--RLNAWTPVMEAEVYAAMDRAEADPAVR-VIVLTGAGRGFCAGADMGELQTIDPSDGRRD   83 (272)
T ss_pred             EEEEECCCCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHhccCCCee-EEEEECCCCCcccccCHHHHhccCccccccc
Confidence            5678888 99999999998  899999999999999999999999999 99999999999999999987542110000 0


Q ss_pred             H---HH-HHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHH
Q 026137           80 E---RV-HYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFR  154 (243)
Q Consensus        80 ~---~~-~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~  154 (243)
                      .   .. ......+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~  161 (272)
T PRK06210         84 TDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADG-AKFTTAFARRGL-IAEHGISWILP  161 (272)
T ss_pred             ccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCC-CEEechHHhcCC-CCCCchhhhhH
Confidence            0   00 011113456778899999999999999999999999999999999987 999999999999 67776 56899


Q ss_pred             HHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcC-CCCcchHHHHHHhhchhHHH
Q 026137          155 EKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR-KCTGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       155 ~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~-~~~~~~~~~~K~~l~~~~~~  228 (243)
                      +++| +.++++++++|++++|+||+++||||+++|+ +++.+++.++++++++. +  +.++..+|+.+++....
T Consensus       162 ~~ig-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~i~~~~~--p~a~~~~K~~l~~~~~~  232 (272)
T PRK06210        162 RLVG-HANALDLLLSARTFYAEEALRLGLVNRVVPP-DELMERTLAYAEDLARNVS--PASMAVIKRQLYEDAFQ  232 (272)
T ss_pred             hhhC-HHHHHHHHHcCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcccC
Confidence            9999 9999999999999999999999999999998 88999999999999975 7  89999999999865433

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-47  Score=328.08  Aligned_cols=216  Identities=21%  Similarity=0.341  Sum_probs=188.4

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCC------
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSR------   75 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~------   75 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|++||+|.|++++......      
T Consensus         6 v~~~~~~~Va~ItlnrP~--~~Nal~~~~~~eL~~~l~~~~~d~~vr-vvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~   82 (288)
T PRK08290          6 VRYEVAGRIARITLNRPE--ARNAQNRQMLYELDAAFRRAEADDAVR-VIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQ   82 (288)
T ss_pred             EEEEeeCCEEEEEecCcc--ccCCCCHHHHHHHHHHHHHHhcCCCee-EEEEECCCCccccCCCcccccccccccccccc
Confidence            678889999999999997  889999999999999999999999999 99999999999999999976321000      


Q ss_pred             -----------cchHHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCC
Q 026137           76 -----------TGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLT  144 (243)
Q Consensus        76 -----------~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~  144 (243)
                                 .............+.+++..+.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~-a~f~~pe~~lGl-  160 (288)
T PRK08290         83 HPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDD-AFFSDPVVRMGI-  160 (288)
T ss_pred             ccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCC-CEecCcccccCc-
Confidence                       0001111122334567788899999999999999999999999999999999987 899999999998 


Q ss_pred             CChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhch
Q 026137          145 LPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYP  224 (243)
Q Consensus       145 ~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~  224 (243)
                       |+.+..++++++| +.++++++++|++++|+||+++||||++|++ +++++++.++++++++.+  +.++..+|+.+++
T Consensus       161 -~~~~~~~l~~~iG-~~~A~~llltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~  235 (288)
T PRK08290        161 -PGVEYFAHPWELG-PRKAKELLFTGDRLTADEAHRLGMVNRVVPR-DELEAETLELARRIAAMP--PFGLRLTKRAVNQ  235 (288)
T ss_pred             -CcchHHHHHHHhh-HHHHHHHHHcCCCCCHHHHHHCCCccEeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHH
Confidence             3455667899999 9999999999999999999999999999998 889999999999999998  8999999999987


Q ss_pred             hHH
Q 026137          225 DLC  227 (243)
Q Consensus       225 ~~~  227 (243)
                      ...
T Consensus       236 ~~~  238 (288)
T PRK08290        236 TLD  238 (288)
T ss_pred             HHh
Confidence            654

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-47  Score=321.34  Aligned_cols=208  Identities=20%  Similarity=0.246  Sum_probs=185.2

Q ss_pred             CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      ||.++++++|++||||||+  +.|++|.+|+.+|.++++.++.|++++ +|||+|.|+.||+|.|++++...      . 
T Consensus         1 ~i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~a~~~~~~d~~vr-~vVl~g~g~~F~aG~Dl~~~~~~------~-   70 (248)
T PRK06072          1 MIKVESREGYAIVTMSRPD--KLNALNLEMRNEFISKLKQINADPKIR-VVIVTGEGRAFCVGADLSEFAPD------F-   70 (248)
T ss_pred             CeEEEEECCEEEEEECCcc--cccCCCHHHHHHHHHHHHHHhcCCCee-EEEEECCCCCcccCcCHHHHhhh------h-
Confidence            7899999999999999997  899999999999999999999999999 99999999999999999987531      1 


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                       ...+.+.+++++..+.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| 
T Consensus        71 -~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~~~~~~Gl-~p~~g~~~~l~~~~g-  146 (248)
T PRK06072         71 -AIDLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRD-VKFVTAFQRLGL-ASDTGVAYFLLKLTG-  146 (248)
T ss_pred             -HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC-CEEecchhhcCc-CCCchHHHHHHHHhh-
Confidence             1223455677888999999999999999999999999999999999987 899999999999 56665 568999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHH
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGV  229 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~  229 (243)
                      . ++++++++|++++|+||+++||||++    +++.+++.++|+++++.|  +.++..+|+.+++.....
T Consensus       147 ~-~a~~lll~g~~~~a~eA~~~Glv~~~----~~~~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~  209 (248)
T PRK06072        147 Q-RFYEILVLGGEFTAEEAERWGLLKIS----EDPLSDAEEMANRISNGP--FQSYIAAKRMINLVLYND  209 (248)
T ss_pred             H-HHHHHHHhCCccCHHHHHHCCCcccc----chHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHhhcC
Confidence            7 78999999999999999999999953    246789999999999998  899999999998765443

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.3e-47  Score=321.86  Aligned_cols=213  Identities=21%  Similarity=0.305  Sum_probs=187.0

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      +.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +||+||.|++||+|.|++++..... .. ...
T Consensus         5 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~~~-~~-~~~   79 (262)
T PRK07509          5 VSVTIEDGIADVRLNRPD--KMNALDFAMFEELIATIKRLKKDRGIR-AVILSGEGGAFCAGLDVKSVASSPG-NA-VKL   79 (262)
T ss_pred             EEEEeeCCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhhCCCCe-EEEEECCCCCcCCCcCHHHHhcccc-hh-hhh
Confidence            678899999999999998  899999999999999999999999999 9999999999999999998764211 10 111


Q ss_pred             ----HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHH
Q 026137           82 ----VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREK  156 (243)
Q Consensus        82 ----~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~  156 (243)
                          .......+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.+++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~  157 (262)
T PRK07509         80 LFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPD-TKLSIMEAKWGL-VPDMAGTVSLRGL  157 (262)
T ss_pred             HhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCC-CEeecchhccCC-CCCchHHHHHHHH
Confidence                1112234566778889999999999999999999999999999999987 899999999999 57765 5799999


Q ss_pred             hCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          157 VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      +| ..++++++++|++++|+||+++||||+++++   +.+++.++++++++.+  +.++..+|+.+++...
T Consensus       158 ~g-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~---~~~~a~~~a~~l~~~~--~~~~~~~K~~l~~~~~  222 (262)
T PRK07509        158 VR-KDVARELTYTARVFSAEEALELGLVTHVSDD---PLAAALALAREIAQRS--PDAIAAAKRLINRSWT  222 (262)
T ss_pred             hC-HHHHHHHHHcCCCcCHHHHHHcCChhhhhch---HHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHhc
Confidence            99 9999999999999999999999999999854   5789999999999998  9999999999987644

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.7e-47  Score=318.67  Aligned_cols=200  Identities=23%  Similarity=0.329  Sum_probs=179.6

Q ss_pred             CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      ||.++++++|++||||||+  +.|++|.+|+.+|.+++++++.+ +++ +|||||.|++||+|.|+++...       . 
T Consensus         1 ~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~~-~vr-~vvl~g~g~~F~aG~Dl~~~~~-------~-   68 (243)
T PRK07854          1 MIGVTRDGQVLTIELQRPE--RRNALNAELCEELREAVRKAVDE-SAR-AIVLTGQGTVFCAGADLSGDVY-------A-   68 (243)
T ss_pred             CceEEEeCCEEEEEeCCCc--cccCCCHHHHHHHHHHHHHHhcC-Cce-EEEEECCCCceecccCCccchh-------H-
Confidence            6889999999999999998  89999999999999999999965 899 9999999999999999985211       1 


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                        ..+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        69 --~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~~G-  143 (243)
T PRK07854         69 --DDFPDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPE-AYFQFPVAKYGI-ALDNWTIRRLSSLVG-  143 (243)
T ss_pred             --HHHHHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCC-CEEecccccccc-CCCccHHHHHHHHhC-
Confidence              123345677888999999999999999999999999999999999987 899999999999 56665 679999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhch
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYP  224 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~  224 (243)
                      ..++++++++|++++|+||+++|||++|++.     +++.++++++++.+  +.++..+|+.++.
T Consensus       144 ~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~-----~~a~~~a~~l~~~~--~~a~~~~K~~l~~  201 (243)
T PRK07854        144 GGRARAMLLGAEKLTAEQALATGMANRIGTL-----ADAQAWAAEIAGLA--PLALQHAKRVLND  201 (243)
T ss_pred             HHHHHHHHHcCCCcCHHHHHHCCCcccccCH-----HHHHHHHHHHHhCC--HHHHHHHHHHHHc
Confidence            9999999999999999999999999999752     27899999999998  9999999999975

>PLN02921 naphthoate synthase

Probab=100.00  E-value=5e-47  Score=328.08  Aligned_cols=212  Identities=21%  Similarity=0.335  Sum_probs=185.2

Q ss_pred             ceeee--eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcch
Q 026137            2 CTSEK--HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGA   78 (243)
Q Consensus         2 i~~~~--~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~   78 (243)
                      |.+++  +++|++|+||||+  +.|++|.+|+.+|.++++.++.|++++ +|||+|.| ++||+|+|++++..... .. 
T Consensus        67 i~~~~~~~~~Va~ItLnrP~--~~Nal~~~~~~eL~~al~~~~~d~~vr-vVVLtg~G~k~FcaG~Dl~~~~~~~~-~~-  141 (327)
T PLN02921         67 IIYEKAVGEGIAKITINRPE--RRNAFRPRTVKELQRAFNDARDDSSVG-VIILTGKGTKAFCSGGDQAVRGKDGY-VG-  141 (327)
T ss_pred             EEEEEecCCCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHhhCCCce-EEEEecCCCCceecCcChhhhhcccc-cc-
Confidence            45666  5899999999998  899999999999999999999999999 99999999 89999999998753110 00 


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhC
Q 026137           79 RERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVG  158 (243)
Q Consensus        79 ~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g  158 (243)
                      ......+  ...+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||.++|+.++++|+.++++++|
T Consensus       142 ~~~~~~~--~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~-A~f~~pe~~~Gl~p~~gg~~~L~rliG  218 (327)
T PLN02921        142 PDDAGRL--NVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADN-AVFGQTGPKVGSFDAGYGSSIMARLVG  218 (327)
T ss_pred             hhHHHHH--HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCC-CEEeCcccccCCCCCccHHHHHHHHhC
Confidence            1111111  2345778899999999999999999999999999999999987 899999999999433445679999999


Q ss_pred             CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137          159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD  225 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~  225 (243)
                       ..++++++++|++++|+||+++|||++|+|. +++++++.++++++++.+  +.+++.+|+.++..
T Consensus       219 -~~~A~ellltG~~~~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~--p~al~~~K~~l~~~  281 (327)
T PLN02921        219 -QKKAREMWFLARFYTASEALKMGLVNTVVPL-DELEGETVKWCREILRNS--PTAIRVLKSALNAA  281 (327)
T ss_pred             -HHHHHHHHHcCCcCCHHHHHHCCCceEEeCH-HHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHh
Confidence             9999999999999999999999999999998 899999999999999998  99999999999765

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.1e-47  Score=326.46  Aligned_cols=216  Identities=22%  Similarity=0.273  Sum_probs=187.5

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCc---ch
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRT---GA   78 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~---~~   78 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||+|.|++||+|.|++++.......   ..
T Consensus        12 v~~e~~~~V~~Itlnrp~--~~Nal~~~m~~eL~~al~~~~~d~~vr-vvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~   88 (302)
T PRK08272         12 MTYEVTGRIARITLNRPE--KGNAITADTPLELRAAVERADLDPGVH-VILVSGAGKGFCAGYDLSAYAEGSSSGGGGGA   88 (302)
T ss_pred             EEEEeECCEEEEEecCcc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEEcCCCCcccCcCHHHHhhcccccccccc
Confidence            567889999999999998  899999999999999999999999999 999999999999999999886421100   00


Q ss_pred             ---------------HH--HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceecccccc
Q 026137           79 ---------------RE--RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDI  141 (243)
Q Consensus        79 ---------------~~--~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~  141 (243)
                                     ..  ....+...+++++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~-a~f~~pe~~~  167 (302)
T PRK08272         89 YPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADD-AKIGYPPTRV  167 (302)
T ss_pred             cccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCC-CEecCcchhc
Confidence                           00  00123455677888999999999999999999999999999999999988 8999999998


Q ss_pred             CCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHh
Q 026137          142 GLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKS  221 (243)
Q Consensus       142 G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~  221 (243)
                      |. +|+.  ..+++++| ..+|++++++|++++|+||+++|||++++|+ +++.+++.++|+++++.|  +.++..+|+.
T Consensus       168 gg-~~~~--~~~~~~vG-~~~A~~llltG~~i~a~eA~~~GLv~~vv~~-~~l~~~a~~la~~ia~~~--~~a~~~~K~~  240 (302)
T PRK08272        168 WG-VPAT--GMWAYRLG-PQRAKRLLFTGDCITGAQAAEWGLAVEAVPP-EELDERTERLVERIAAVP--VNQLAMVKLA  240 (302)
T ss_pred             cc-CChH--HHHHHHhh-HHHHHHHHHcCCccCHHHHHHcCCCceecCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHH
Confidence            55 3433  35788999 9999999999999999999999999999997 899999999999999998  9999999999


Q ss_pred             hchhHHH
Q 026137          222 LYPDLCG  228 (243)
Q Consensus       222 l~~~~~~  228 (243)
                      ++..+..
T Consensus       241 l~~~~~~  247 (302)
T PRK08272        241 VNSALLQ  247 (302)
T ss_pred             HHHHHHH
Confidence            9876543

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.2e-47  Score=320.76  Aligned_cols=215  Identities=26%  Similarity=0.347  Sum_probs=186.7

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      +.++++++|++|+||||+  +.|++|.+|+.+|.++++.++.|++++ +||+||.|++||+|.|++++..... +. ...
T Consensus         8 i~~~~~~~v~~i~lnrp~--~~Nal~~~~~~el~~~l~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~-~~~   82 (260)
T PRK07827          8 VRYAVDGGVATLTLDSPH--NRNALSARLVAQLHDGLRAAAADPAVR-AVVLTHTGGTFCAGADLSEAGGGGG-DP-YDA   82 (260)
T ss_pred             eEEEeeCCEEEEEEcCcc--ccCCCCHHHHHHHHHHHHHHhcCCCee-EEEEEcCCCCccCCcChHHHhhccc-Cc-hhH
Confidence            567889999999999998  899999999999999999999999999 9999999999999999998754211 11 112


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhH-HHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCA-ALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~-~~l~~~~g~~  160 (243)
                      ...+...+.+++.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+ .++++ ++ .
T Consensus        83 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~-l~-~  158 (260)
T PRK07827         83 AVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPE-STFALTEARIGV-APAIISLTLLPR-LS-P  158 (260)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCC-CEEeCcccccCC-CCCcccchhHHh-hh-H
Confidence            2234556788899999999999999999999999999999999999987 899999999999 687775 46665 45 5


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVL  230 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l  230 (243)
                      .++++++++|++++|+||+++|||+++++   ++.+++.++++++++.+  +.++..+|+.+++.+...+
T Consensus       159 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~---~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~~  223 (260)
T PRK07827        159 RAAARYYLTGEKFGAAEAARIGLVTAAAD---DVDAAVAALLADLRRGS--PQGLAESKALTTAAVLAGF  223 (260)
T ss_pred             HHHHHHHHhCCccCHHHHHHcCCcccchH---HHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhcCCH
Confidence            68999999999999999999999999963   48899999999999998  8999999999987654433

>PRK08321 naphthoate synthase; Validated

Probab=100.00  E-value=1.2e-46  Score=323.73  Aligned_cols=216  Identities=17%  Similarity=0.256  Sum_probs=183.7

Q ss_pred             ceeee--eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-------CccccCCChhhHHHc
Q 026137            2 CTSEK--HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-------KFFSNGFDLAWAQAA   72 (243)
Q Consensus         2 i~~~~--~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-------~~F~~G~D~~~~~~~   72 (243)
                      |++++  +++|++||||||+  +.|++|.+|+.+|.++++.++.|++++ +|||||.|       ++||+|+|++++...
T Consensus        25 i~~~~~~~~~va~itlnrP~--~~Nal~~~~~~~l~~al~~~~~d~~vr-vvVltg~g~~~~~~~~~FcaG~Dl~~~~~~  101 (302)
T PRK08321         25 ITYHRAVDQGTVRIAFDRPE--VRNAFRPHTVDELYRALDHARMSPDVG-CVLLTGNGPSPKDGGWAFCSGGDQRIRGRD  101 (302)
T ss_pred             EEEEEecCCCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHHhhCCCcE-EEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence            55666  8999999999998  899999999999999999999999999 99999987       599999999875321


Q ss_pred             C----C-CcchHHHHHHH-HHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEe-cCccceeccccccCCCC
Q 026137           73 G----S-RTGARERVHYM-FKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMR-RDKGVLYMSEVDIGLTL  145 (243)
Q Consensus        73 ~----~-~~~~~~~~~~~-~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~-~~~a~f~~p~~~~G~~~  145 (243)
                      .    . .+......... .....++...+..+||||||+|||+|+|||++|+++||+||++ ++ ++|++||+++|+.+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~-a~f~~pe~~~Gl~p  180 (302)
T PRK08321        102 GYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREH-ARFKQTDADVGSFD  180 (302)
T ss_pred             cccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCC-CEEECCccccccCC
Confidence            0    0 00000010111 1123456778899999999999999999999999999999999 45 89999999999954


Q ss_pred             ChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137          146 PDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD  225 (243)
Q Consensus       146 p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~  225 (243)
                      |++++.++++++| ..++++++++|++++|+||+++|||+++||+ +++++++.++++++++.+  +.+++.+|+.++..
T Consensus       181 ~~~~~~~L~r~vG-~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~  256 (302)
T PRK08321        181 GGYGSAYLARQVG-QKFAREIFFLGRTYSAEEAHDMGAVNAVVPH-AELETEALEWAREINGKS--PTAMRMLKYAFNLT  256 (302)
T ss_pred             CchHHHHHHHHhC-HHHHHHHHHcCCccCHHHHHHCCCceEeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence            5556779999999 9999999999999999999999999999997 889999999999999998  99999999999754

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=2.1e-46  Score=315.56  Aligned_cols=208  Identities=16%  Similarity=0.201  Sum_probs=181.7

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      +.++++++|++|+||+|+  +.|++|.+|+.+|.+++++++  ++++ +||+||.|++||+|+|++++..... .  ...
T Consensus         6 i~~~~~~~i~~itlnrp~--~~Nal~~~~~~~L~~~l~~~~--~~vr-~vVl~g~g~~FsaG~Dl~~~~~~~~-~--~~~   77 (255)
T PRK07112          6 IRVRQQGDVCFLQLHRPE--AQNTINDRLIAECMDVLDRCE--HAAT-IVVLEGLPEVFCFGADFSAIAEKPD-A--GRA   77 (255)
T ss_pred             EEEEeeCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHhh--cCce-EEEEEcCCCCcccCcCHHHHhhccc-c--chh
Confidence            577889999999999997  899999999999999999998  4689 9999999999999999998764211 1  111


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSAT  161 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~  161 (243)
                      .......+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++++.++++++| ..
T Consensus        78 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~Gl-~p~~~~~~l~~~vg-~~  154 (255)
T PRK07112         78 DLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADET-APFSLSELLFGL-IPACVLPFLIRRIG-TQ  154 (255)
T ss_pred             hhhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCC-CEEeCchhhhcc-CcchhhHHHHHHhC-HH
Confidence            1112344567888999999999999999999999999999999999987 899999999999 68777788999999 99


Q ss_pred             HHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137          162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD  225 (243)
Q Consensus       162 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~  225 (243)
                      ++++++++|++++|+||+++||||+++|+ ++  ..+.++++++++.+  +.++..+|+.++..
T Consensus       155 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~--~~~~~~a~~l~~~~--p~a~~~~K~~~~~~  213 (255)
T PRK07112        155 KAHYMTLMTQPVTAQQAFSWGLVDAYGAN-SD--TLLRKHLLRLRCLN--KAAVARYKSYASTL  213 (255)
T ss_pred             HHHHHHHhCCcccHHHHHHcCCCceecCc-HH--HHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence            99999999999999999999999999997 43  25788999999998  89999999998753

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.1e-46  Score=320.47  Aligned_cols=214  Identities=18%  Similarity=0.171  Sum_probs=179.6

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhh-HHH---cCCCcc
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAW-AQA---AGSRTG   77 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~-~~~---~~~~~~   77 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|++||+|+|+++ +..   ....+.
T Consensus         7 v~~~~~~~Va~ItLnrP~--~~NAl~~~~~~eL~~al~~~~~d~~vr-vvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~   83 (298)
T PRK12478          7 LLYTTAGPVATITLNRPE--QLNTIVPPMPDEIEAAIGLAERDQDIK-VIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDG   83 (298)
T ss_pred             EEEeccCCEEEEEecCCc--ccCCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCcccCcCccccccccchhccccc
Confidence            567889999999999998  899999999999999999999999999 9999999999999999985 211   000000


Q ss_pred             hHHHHHHH------HHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceecccccc-CCCCChhhH
Q 026137           78 ARERVHYM------FKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDI-GLTLPDYCA  150 (243)
Q Consensus        78 ~~~~~~~~------~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~-G~~~p~~g~  150 (243)
                      .......+      ......++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++ |+ ++++ .
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-A~f~~pe~~l~G~-~~~~-~  160 (298)
T PRK12478         84 RWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDD-AVIGTPYSRMWGA-YLTG-M  160 (298)
T ss_pred             ccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCC-cEEeccccccccC-Cchh-H
Confidence            00000111      011234567789999999999999999999999999999999988 8999999997 88 4422 2


Q ss_pred             HHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          151 ALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       151 ~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                        +.+++| ..++++++++|++++|+||+++|||++|||+ +++++++.+++++++..|  +.+++.+|+.++....
T Consensus       161 --~~~~vG-~~~A~~llltg~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~  231 (298)
T PRK12478        161 --WLYRLS-LAKVKWHSLTGRPLTGVQAAEAELINEAVPF-ERLEARVAEVATELARIP--LSQLQAQKLIVNQAYE  231 (298)
T ss_pred             --HHHHhh-HHHHHHHHHcCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHH
Confidence              236799 9999999999999999999999999999998 899999999999999998  9999999999986533

>PRK08788 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=9.7e-46  Score=314.72  Aligned_cols=214  Identities=19%  Similarity=0.243  Sum_probs=176.4

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHh-----cCCCCEEEEEecC-CCccccCCChhhHHHcCCC
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKA-----EATPGSAFITTSH-GKFFSNGFDLAWAQAAGSR   75 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~-----~~~~~~~vvl~g~-g~~F~~G~D~~~~~~~~~~   75 (243)
                      |.++.+++|++|+|| |+  +.|++|.+|+.+|.+++++++.     |++++ +||+||. |++||+|.|++++..... 
T Consensus        19 i~~e~~~~ia~itl~-p~--~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vr-vVVltg~~gk~FcaG~Dl~~~~~~~~-   93 (287)
T PRK08788         19 VYYEEERNVMWMYMR-AQ--PRPCFNLELLDDIMNLQRAIRQRLDDSGLPVD-FWVLASDVPGVFNLGGDLALFAELIR-   93 (287)
T ss_pred             EEEEccCCEEEEEEC-CC--CCCCCCHHHHHHHHHHHHHHHhhccCCCCCeE-EEEEEcCCCCceEeCcCHHHHhhhcc-
Confidence            567778999999997 87  8999999999999999999998     88999 9999999 799999999998753211 


Q ss_pred             cchHHHHHHHHHHHHHHHHHHh---cCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HH
Q 026137           76 TGARERVHYMFKSFRPLVAAMM---DLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AA  151 (243)
Q Consensus        76 ~~~~~~~~~~~~~~~~l~~~l~---~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~  151 (243)
                      ..+......+...+.+.+.++.   .+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~-a~f~~pev~lGl-~p~~g~~~  171 (287)
T PRK08788         94 AGDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERG-AKMGFPEILFNL-FPGMGAYS  171 (287)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCC-CEeeCchhhhCc-CCCchHHH
Confidence            1111111122222233333333   799999999999999999999999999999987 899999999999 67665 67


Q ss_pred             HHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhch
Q 026137          152 LFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYP  224 (243)
Q Consensus       152 ~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~  224 (243)
                      ++++++| ..++++++++|+.++|+||+++||||+++|+ +++.+++.+++++++..+..+.++...|+.++.
T Consensus       172 ~l~~~vG-~~~A~ellltG~~l~A~eA~~~GLV~~vv~~-~el~~~a~~~a~~ia~~~~~~~a~k~~~~~~~~  242 (287)
T PRK08788        172 FLARRVG-PKLAEELILSGKLYTAEELHDMGLVDVLVED-GQGEAAVRTFIRKSKRKLNGWRAMLRARRRVNP  242 (287)
T ss_pred             HHHHHhh-HHHHHHHHHcCCCCCHHHHHHCCCCcEecCc-hHHHHHHHHHHHHHhcCccHHHHHHHHHHhhcc
Confidence            8999999 9999999999999999999999999999998 889999999999999764234555556655544

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=100.00  E-value=5.7e-46  Score=324.16  Aligned_cols=214  Identities=20%  Similarity=0.241  Sum_probs=185.5

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.++++.++.|++++ +||+||.| ++||+|+|++++..... .....
T Consensus         5 v~~~~~~~v~~itLnrP~--~~Nal~~~m~~~L~~~l~~~~~d~~vr-vvVltg~g~~~F~aG~Dl~~~~~~~~-~~~~~   80 (342)
T PRK05617          5 VLAEVEGGVGVITLNRPK--ALNALSLEMIRAIDAALDAWEDDDAVA-AVVIEGAGERGFCAGGDIRALYEAAR-AGDPL   80 (342)
T ss_pred             EEEEEECCEEEEEECCCc--cccCCCHHHHHHHHHHHHHHhhCCCeE-EEEEEcCCCCceeCCcCHHHHHhhhc-cCCch
Confidence            678899999999999998  899999999999999999999999999 99999998 99999999998754211 11011


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhH-HHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCA-ALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~-~~l~~~~g~  159 (243)
                      ....+.....+++.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+ .+++++.| 
T Consensus        81 ~~~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~-a~f~~pe~~lGl-~P~~g~~~~L~r~~g-  157 (342)
T PRK05617         81 AADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTER-TKMAMPETGIGF-FPDVGGTYFLSRAPG-  157 (342)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCC-CEeeCCccccCc-CCCccceeEehhccc-
Confidence            11123344557888999999999999999999999999999999999987 999999999999 677764 67888755 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHH------------------------------------------
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEA------------------------------------------  197 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~------------------------------------------  197 (243)
                       ..+++++++|++++|+||+++|||++++|+ +++...                                          
T Consensus       158 -~~a~~llltG~~i~A~eA~~~GLv~~vv~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  235 (342)
T PRK05617        158 -ALGTYLALTGARISAADALYAGLADHFVPS-ADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDEC  235 (342)
T ss_pred             -HHHHHHHHcCCCCCHHHHHHcCCcceecCH-HHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHH
Confidence             578999999999999999999999999998 778776                                          


Q ss_pred             --------------------HHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137          198 --------------------SMRLGKQLAGRKCTGEVYAEIRKSLYPDL  226 (243)
Q Consensus       198 --------------------a~~~a~~~~~~~~~~~~~~~~K~~l~~~~  226 (243)
                                          +.+++++|++.+  |.++..+|+.+++..
T Consensus       236 ~~~~~~~~~~~~l~~~~~~~a~~~a~~i~~~s--p~a~~~~k~~l~~~~  282 (342)
T PRK05617        236 FAGDTVEDIIAALEADGGEFAAKTADTLRSRS--PTSLKVTLEQLRRAR  282 (342)
T ss_pred             hCCCCHHHHHHHHHhccHHHHHHHHHHHHhCC--cHHHHHHHHHHHHhc
Confidence                                889999999998  999999999997653

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=4e-45  Score=322.46  Aligned_cols=212  Identities=17%  Similarity=0.163  Sum_probs=184.3

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.++++.++.|++++ +||++|.|++||+|+|++++..... ......
T Consensus        39 V~~e~~g~v~~ItLNRP~--~lNALs~~m~~~L~~al~~~~~D~~vr-vVVl~G~GkaFcAGgDl~~l~~~~~-~~~~~~  114 (401)
T PLN02157         39 VLVEGSGCSRTAILNRPP--ALNALTTHMGYRLQKLYKNWEEDPNIG-FVMMKGSGRAFCAGGDIVSLYHLRK-RGSPDA  114 (401)
T ss_pred             eEEEEECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHhhCCCCe-EEEEECCCCCccCCcCHHHHHhhcc-ccchHH
Confidence            567889999999999998  899999999999999999999999999 9999999999999999998865321 111122


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+....+++...|.++|||+||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus       115 ~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~-a~fa~PE~~iGl-~Pd~G~s~~L~rl~G-~  191 (401)
T PLN02157        115 IREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDR-TIFATPETIIGF-HPDAGASFNLSHLPG-R  191 (401)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCC-CEEEChhhhcCC-CCCccHHHHHHHhhh-H
Confidence            2334444556778899999999999999999999999999999999987 899999999999 68776 568999998 6


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD  225 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~  225 (243)
                       .++++++||++++|+||+++|||+++||+ +++ +++.+++++++..+  +.++..+|+.++..
T Consensus       192 -~a~~L~LTG~~i~A~eA~~~GLv~~vVp~-~~l-~~~~~~~~~i~~~~--p~av~~~k~~~~~~  251 (401)
T PLN02157        192 -LGEYLGLTGLKLSGAEMLACGLATHYIRS-EEI-PVMEEQLKKLLTDD--PSVVESCLEKCAEV  251 (401)
T ss_pred             -HHHHHHHcCCcCCHHHHHHcCCceEEeCH-hHH-HHHHHHHHHHHcCC--HHHHHHHHHHHhcc
Confidence             78999999999999999999999999998 777 67889999998876  78899999988653

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=1.1e-44  Score=319.66  Aligned_cols=211  Identities=18%  Similarity=0.196  Sum_probs=181.4

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.++++.++.|++|+ +|||+|.|++||+|+|++++.....  . ...
T Consensus        13 v~~~~~~~v~~ItLnrP~--~~Nal~~~m~~eL~~al~~~~~d~~vr-vvVl~g~g~~FcaG~Dl~~~~~~~~--~-~~~   86 (379)
T PLN02874         13 VLGEEKGRVRVITLNRPR--QLNVISLSVVSLLAEFLEQWEKDDSVE-LIIIKGAGRAFSAGGDLKMFYDGRE--S-DDS   86 (379)
T ss_pred             eEEEEECCEEEEEECCCc--cccCCCHHHHHHHHHHHHHHhhCCCeE-EEEEECCCCCccCccCHHHHHhhcc--c-chH
Confidence            567789999999999997  899999999999999999999999999 9999999999999999998854211  1 111


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+...++.++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus        87 ~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~iGl-~p~~g~~~~L~rl~g-~  163 (379)
T PLN02874         87 CLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEK-TVFATPEASVGF-HTDCGFSYILSRLPG-H  163 (379)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCC-eEEeccccccCc-CCChhHHHHHHhhhH-H
Confidence            2223344556778899999999999999999999999999999999987 899999999999 57766 567888877 5


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHH---H----------------------------------------
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAE---A----------------------------------------  197 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~---~----------------------------------------  197 (243)
                       .++++++||++++|+||+++|||+++||+ +++.+   +                                        
T Consensus       164 -~a~~l~ltG~~i~a~eA~~~GLv~~vv~~-~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~  241 (379)
T PLN02874        164 -LGEYLALTGARLNGKEMVACGLATHFVPS-EKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINEC  241 (379)
T ss_pred             -HHHHHHHcCCcccHHHHHHcCCccEEeCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHH
Confidence             78999999999999999999999999997 66755   2                                        


Q ss_pred             ------------------------HHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137          198 ------------------------SMRLGKQLAGRKCTGEVYAEIRKSLYPD  225 (243)
Q Consensus       198 ------------------------a~~~a~~~~~~~~~~~~~~~~K~~l~~~  225 (243)
                                              |.+++++|++.+  |.+++.+|+.++..
T Consensus       242 f~~~~~~eii~al~~~~~~~~~~~A~~~a~~l~~~s--P~al~~tk~~~~~~  291 (379)
T PLN02874        242 FSKDTVEEIIKAFESEASKTGNEWIKETLKGLRRSS--PTGLKITLRSIREG  291 (379)
T ss_pred             hCCCCHHHHHHHHhhcccccccHHHHHHHHHHHhcC--hHHHHHHHHHHHHh
Confidence                                    347888898888  89999999988764

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=100.00  E-value=1e-43  Score=305.54  Aligned_cols=208  Identities=14%  Similarity=0.180  Sum_probs=181.1

Q ss_pred             CCEEE--EEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHHHHHH
Q 026137            8 GDVFV--LTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARERVHY   84 (243)
Q Consensus         8 ~~v~~--i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~~~~~   84 (243)
                      .|++.  |+||||+  +.|++|.+|+.+|.++++.++.|++++ +|||||.| ++||+|.|++++..... .. ......
T Consensus        34 ~~~~~A~ItLNRP~--k~NAls~~ml~eL~~al~~~~~D~dVr-vVVLTG~G~kaFCAG~DLke~~~~~~-~~-~~~~~~  108 (360)
T TIGR03200        34 PGLYNAWIILDNPK--QYNSYTTDMVKAIILAFRRASSDRDVV-AVVFTAVGDKAFCTGGNTKEYAEYYA-GN-PQEYRQ  108 (360)
T ss_pred             CceEEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEEcCCCCcccCCcCHHHHhhhcc-cC-hhHHHH
Confidence            35544  8999997  899999999999999999999999999 99999999 79999999998765211 11 222334


Q ss_pred             HHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCHHHH
Q 026137           85 MFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSATAR  163 (243)
Q Consensus        85 ~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~~~a  163 (243)
                      +.+.+++++.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ .|++| +.++++++| ..+|
T Consensus       109 ~~~~~~~l~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~-A~Fg~PE~rlGl-~P~~Ggt~rLprlvG-~~rA  185 (360)
T TIGR03200       109 YMRLFNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDL-ANFGQAGPKHGS-APIGGATDFLPLMIG-CEQA  185 (360)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCC-CEEeCchhccCC-CCCccHHHHHHHhhC-HHHH
Confidence            5566778899999999999999999999999999999999999987 999999999999 57666 579999999 9999


Q ss_pred             HHHHhcCcCCCHHHHHHcCchhhhcCChhHH------------HHHHHHHHHHHhcCCCCcchHHHHHHhhch
Q 026137          164 RDVLLRAKKIKGEEALRMGLVEAAYDSEERV------------AEASMRLGKQLAGRKCTGEVYAEIRKSLYP  224 (243)
Q Consensus       164 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l------------~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~  224 (243)
                      ++++++|++++|+||+++|||++++|+ +++            ++.+.++++.+...+....++...|.++..
T Consensus       186 ~~llltGe~~sA~EA~~~GLVd~VVp~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~  257 (360)
T TIGR03200       186 MVSGTLCEPWSAHKAKRLGIIMDVVPA-LKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQ  257 (360)
T ss_pred             HHHHHhCCcCcHHHHHHcCChheecCc-hhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhc
Confidence            999999999999999999999999998 778            888888899998887444588888887766

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=9.5e-45  Score=287.74  Aligned_cols=228  Identities=21%  Similarity=0.306  Sum_probs=201.8

Q ss_pred             eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcC---CCcch----H
Q 026137            7 HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAG---SRTGA----R   79 (243)
Q Consensus         7 ~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~---~~~~~----~   79 (243)
                      +.-|+.+.||||.  +.|++|..|+.|+.++++.+..||++| +||++|.|+.||+|+|++.+....   ....+    .
T Consensus        29 ~~~V~hv~lnRPs--k~Nal~~~~w~E~~~cf~~l~~dpdcr-~iilsg~GKhFcaGIDl~~~~~~~~~~~~~dd~aR~g  105 (292)
T KOG1681|consen   29 QPFVYHVQLNRPS--KLNALNKVFWREFKECFDSLDRDPDCR-AIILSGAGKHFCAGIDLNDMASDRILQPEGDDVARKG  105 (292)
T ss_pred             CCeEEEEEecCcc--hhhhhhHHHHHHHHHHHHhhccCCCce-EEEEecCCcceecccCcchhhhhhccccccchHhhhh
Confidence            5689999999999  999999999999999999999999999 999999999999999988765431   10111    2


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhH-HHHHHHhC
Q 026137           80 ERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCA-ALFREKVG  158 (243)
Q Consensus        80 ~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~-~~l~~~~g  158 (243)
                      ....++...+|+-+..|.+||||+|++|||+|+|+|..|..+||+|+|++| ++|..-|+.+|+ ..+.|+ .++|..+|
T Consensus       106 ~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqD-AffsvkEVDvgl-aADvGTL~RlpkvVG  183 (292)
T KOG1681|consen  106 RSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQD-AFFSVKEVDVGL-AADVGTLNRLPKVVG  183 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeeccc-ceeeeeeeeeeh-hhchhhHhhhhHHhc
Confidence            345677889999999999999999999999999999999999999999999 999999999999 688886 79999999


Q ss_pred             CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh--hhHHH
Q 026137          159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG--LDIKA  236 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~--~~~~~  236 (243)
                      +...++++.+|++.|+|.||++.|||++|+|+.+++++.+..+|+.|+.++  |.++..+|..++-....+.+  ++...
T Consensus       184 n~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KS--pvaVqgTK~~L~ysrehsv~~sLnyva  261 (292)
T KOG1681|consen  184 NQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKS--PVAVQGTKENLLYSREHSVEESLNYVA  261 (292)
T ss_pred             chHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCC--ceeeechHHHHHHHhhhhhhhhHHHHH
Confidence            999999999999999999999999999999999999999999999999998  99999999988765555444  34555


Q ss_pred             HhhcC
Q 026137          237 VFSNS  241 (243)
Q Consensus       237 ~~~~~  241 (243)
                      .|.-+
T Consensus       262 twNms  266 (292)
T KOG1681|consen  262 TWNMS  266 (292)
T ss_pred             HHHHH
Confidence            56543

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=2.2e-43  Score=321.51  Aligned_cols=216  Identities=17%  Similarity=0.129  Sum_probs=186.8

Q ss_pred             eeeeeCCEEEEEEcCCCCCCC-------------CCCCHHHHHHHHHHHHHHHh-cCCCCEEEEEecCCCc-cccCCChh
Q 026137            3 TSEKHGDVFVLTLTGSSNVDE-------------HRLGPSAIDSILSAIAQAKA-EATPGSAFITTSHGKF-FSNGFDLA   67 (243)
Q Consensus         3 ~~~~~~~v~~i~ln~p~~~~~-------------N~l~~~~~~~l~~~l~~~~~-~~~~~~~vvl~g~g~~-F~~G~D~~   67 (243)
                      .++++++|++||||||+  +.             |+|+.+|+.+|.+++.+++. |++++ +|||||.|+. ||+|.|+.
T Consensus       261 ~~~~~~~va~itlnrP~--~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr-~vVl~g~G~~~F~aG~Dl~  337 (546)
T TIGR03222       261 AIDRAARTATITLKGPK--AAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIG-LWVFRTQGDAELVLAADAL  337 (546)
T ss_pred             EEeccCCEEEEEecChh--hcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeE-EEEEEcCCCCceecCcCcc
Confidence            45678999999999998  88             99999999999999999994 59999 9999999987 99999998


Q ss_pred             hHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEE-CCccchhH-HHHHHhcCEEEE-------ecCccceeccc
Q 026137           68 WAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAV-NGHAAAAG-FILALSHDYVVM-------RRDKGVLYMSE  138 (243)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v-~G~~~G~G-~~lal~~D~~ia-------~~~~a~f~~p~  138 (243)
                      ....    .. ...........++++.+|..+||||||+| ||+|+||| ++|+++||+||+       +++ ++|++||
T Consensus       338 ~~~~----~~-~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~-a~f~~~e  411 (546)
T TIGR03222       338 LEAH----KD-HWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPE-PAITLSE  411 (546)
T ss_pred             cccc----cc-chhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCC-CEEeCCc
Confidence            4221    01 11112223445678899999999999999 89999999 999999999999       777 8999999


Q ss_pred             cccCCCCChhh-HHHHHHHh-CCHHHH--HHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcch
Q 026137          139 VDIGLTLPDYC-AALFREKV-GSATAR--RDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEV  214 (243)
Q Consensus       139 ~~~G~~~p~~g-~~~l~~~~-g~~~~a--~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~  214 (243)
                      +++|+ +|++| +++|++++ | ..++  ++++++|++++|+||+++|||++++++ +++.+++.++++++++.+  |.+
T Consensus       412 ~~lGl-~p~~gg~~~L~~~v~G-~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--p~a  486 (546)
T TIGR03222       412 LNFGL-YPMVNGLSRLATRFYA-EPAPVAAVRDKIGQALDAEEAERLGLVTAAPDD-IDWEDEIRIALEERASFS--PDA  486 (546)
T ss_pred             ccccc-CCCcCcHHHHHHHhcC-chhHHHHHHHHhCCCCCHHHHHHcCCcccccCc-hHHHHHHHHHHHHHHhcC--HHH
Confidence            99999 67766 57899998 9 8888  559999999999999999999999998 889999999999999998  999


Q ss_pred             HHHHHHhhchhHHHHHhh
Q 026137          215 YAEIRKSLYPDLCGVLGL  232 (243)
Q Consensus       215 ~~~~K~~l~~~~~~~l~~  232 (243)
                      ++.+|+.++......++.
T Consensus       487 ~~~~K~~l~~~~~~~~~~  504 (546)
T TIGR03222       487 LTGLEANLRFAGPETMET  504 (546)
T ss_pred             HHHHHHHHhhcCCcChhh
Confidence            999999998765554443

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=2.2e-43  Score=322.47  Aligned_cols=216  Identities=14%  Similarity=0.097  Sum_probs=185.8

Q ss_pred             eeeeeCCEEEEEEcCCCCCCC-------------CCCCHHHHHHHHHHHHHHHh-cCCCCEEEEEecCC-CccccCCChh
Q 026137            3 TSEKHGDVFVLTLTGSSNVDE-------------HRLGPSAIDSILSAIAQAKA-EATPGSAFITTSHG-KFFSNGFDLA   67 (243)
Q Consensus         3 ~~~~~~~v~~i~ln~p~~~~~-------------N~l~~~~~~~l~~~l~~~~~-~~~~~~~vvl~g~g-~~F~~G~D~~   67 (243)
                      .++++++|++||||||+  +.             |+||.+|+.+|.+++++++. |+++| +|||||.| +.||+|+|++
T Consensus       265 ~~~~~~~va~itlnrP~--~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr-~vVltg~G~~~F~aG~Dl~  341 (550)
T PRK08184        265 EIDRAARTATITVKAPT--AAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIG-TWVLKTEGDAAAVLAADAT  341 (550)
T ss_pred             EEEccCCEEEEEEeCcc--cccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeE-EEEEEcCCCCcEEeCCChh
Confidence            44567899999999997  77             68999999999999999996 79999 99999999 5999999987


Q ss_pred             hHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEC-CccchhH-HHHHHhcCEEEEe-------cCccceeccc
Q 026137           68 WAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVN-GHAAAAG-FILALSHDYVVMR-------RDKGVLYMSE  138 (243)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~-G~~~G~G-~~lal~~D~~ia~-------~~~a~f~~p~  138 (243)
                      ....  . +  ..........+++++.++.++||||||+|| |+|+||| ++|+++||+||++       ++ ++|++||
T Consensus       342 ~~~~--~-~--~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~-a~f~~pe  415 (550)
T PRK08184        342 LLAH--K-D--HWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPA-PAITLSA  415 (550)
T ss_pred             hhcc--c-c--hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCC-CEEECcc
Confidence            4321  1 1  111122334556788899999999999997 9999999 9999999999999       76 8999999


Q ss_pred             cccCCCCChhh-HHHHHHH-hCCHHHHHHH--HhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcch
Q 026137          139 VDIGLTLPDYC-AALFREK-VGSATARRDV--LLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEV  214 (243)
Q Consensus       139 ~~~G~~~p~~g-~~~l~~~-~g~~~~a~~l--~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~  214 (243)
                      +++|+ +|++| +++|+++ +| ..+++++  +++|++++|+||+++|||++++|+ +++++++.++++++++.|  |.+
T Consensus       416 ~~~Gl-~p~~gg~~~L~r~~vG-~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~ia~~~--p~a  490 (550)
T PRK08184        416 LNFGL-YPMVNGLSRLARRFYG-EPDPLAAVRAKIGQPLDADAAEELGLVTAAPDD-IDWEDEVRIALEERASLS--PDA  490 (550)
T ss_pred             ccccC-CCCCCcHHHhHHHhcC-hHHHHHHHHHHhCCcCCHHHHHHcCCcccccCh-HHHHHHHHHHHHHHHhCC--HHH
Confidence            99999 67765 6799998 69 9989987  589999999999999999999998 889999999999999998  999


Q ss_pred             HHHHHHhhchhHHHHHhh
Q 026137          215 YAEIRKSLYPDLCGVLGL  232 (243)
Q Consensus       215 ~~~~K~~l~~~~~~~l~~  232 (243)
                      ++.+|+.++....+.++.
T Consensus       491 ~~~~K~~l~~~~~~~~~~  508 (550)
T PRK08184        491 LTGMEANLRFAGPETMET  508 (550)
T ss_pred             HHHHHHHHHhcCCCCHHH
Confidence            999999998876555543

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=100.00  E-value=3.3e-43  Score=309.31  Aligned_cols=211  Identities=20%  Similarity=0.234  Sum_probs=178.2

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|+||.+|+.+|.++++.++.|++++ +||++|.|++||+|+|++++..... ......
T Consensus        11 v~~~~~~~i~~ItLnRP~--~lNALs~~m~~~L~~al~~~~~d~~v~-~VVl~G~G~~FcAGgDl~~l~~~~~-~~~~~~   86 (381)
T PLN02988         11 VLVEEKSSVRILTLNRPK--QLNALSFHMISRLLQLFLAFEEDPSVK-LVILKGHGRAFCAGGDVAAVVRDIE-QGNWRL   86 (381)
T ss_pred             eEEEEECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHHhCCCee-EEEEECCCCCcccCcCHHHHHhhhc-ccchhH
Confidence            567788999999999998  899999999999999999999999999 9999999999999999998754211 111111


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                      ...++...+.+...+.++|||+||++||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++.+| .
T Consensus        87 ~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~-a~f~mPE~~iGl-~Pd~G~s~~L~rl~G-~  163 (381)
T PLN02988         87 GANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATEN-TVFAMPETALGL-FPDVGASYFLSRLPG-F  163 (381)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCC-cEEeChhhhcCc-CCCccHHHHHHHHHH-H
Confidence            2223333345667889999999999999999999999999999999987 899999999999 67776 568888888 5


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhch
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYP  224 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~  224 (243)
                       .++++++||++++|+||+++||++++|++ +++.+.+.+++ +++..+  +.++..+|+.+..
T Consensus       164 -~~~~l~LTG~~i~a~eA~~~GLv~~vv~~-~~l~~~~~~la-~~~~~~--p~~~~~~~~~~~~  222 (381)
T PLN02988        164 -FGEYVGLTGARLDGAEMLACGLATHFVPS-TRLTALEADLC-RIGSND--PTFASTILDAYTQ  222 (381)
T ss_pred             -HHHHHHHcCCCCCHHHHHHcCCceEecCH-hHHHHHHHHHH-HhhccC--HHHHHHHHHHhhc
Confidence             58899999999999999999999999998 88999888887 666655  6667777777653

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=1.9e-42  Score=327.25  Aligned_cols=198  Identities=23%  Similarity=0.347  Sum_probs=176.7

Q ss_pred             ceee-eeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSE-KHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~-~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      +.++ ++++|++||||||+  +.|++|.+|+.+|.++++.++.|++++ +|||||.|++||+|+|++++..... .. ..
T Consensus         8 i~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~~~-~~-~~   82 (715)
T PRK11730          8 LQVDWLEDGIAELVFDAPG--SVNKLDRATLASLGEALDALEAQSDLK-GLLLTSAKDAFIVGADITEFLSLFA-AP-EE   82 (715)
T ss_pred             EEEEEcCCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHhcCCCcE-EEEEECCCCccccCcCHHHHhhhcc-CC-HH
Confidence            4456 47899999999998  899999999999999999999999999 9999999999999999998764211 11 22


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                      ....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| 
T Consensus        83 ~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~-a~f~~pe~~lGl-~p~~g~~~~L~rlvG-  159 (715)
T PRK11730         83 ELSQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPD-ARIGLPETKLGI-MPGFGGTVRLPRLIG-  159 (715)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCC-CEEeCchhhcCC-CCCchHHHHHHHhcC-
Confidence            23345566788899999999999999999999999999999999999987 999999999999 67766 578999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcC
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR  208 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~  208 (243)
                      ..+|++++++|++++|+||+++||||+++|+ +++.+++.++|++++..
T Consensus       160 ~~~A~~llltG~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~  207 (715)
T PRK11730        160 ADNALEWIAAGKDVRAEDALKVGAVDAVVAP-EKLQEAALALLKQAIAG  207 (715)
T ss_pred             HHHHHHHHHcCCcCCHHHHHHCCCCeEecCH-HHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999998 88999999999999865

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=100.00  E-value=7e-42  Score=277.09  Aligned_cols=195  Identities=29%  Similarity=0.457  Sum_probs=176.9

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+|+++|.++++.++.|++++ +||+||.|+.||+|.|++++.+... .  ...
T Consensus         1 i~~~~~~~i~~i~l~~~~--~~N~~~~~~~~~l~~~l~~~~~d~~~~-~vvl~~~~~~Fs~G~dl~~~~~~~~-~--~~~   74 (195)
T cd06558           1 VLVERDGGVATITLNRPE--KRNALSLEMLDELAAALDEAEADPDVR-VVVLTGAGKAFCAGADLKELAALSD-A--GEE   74 (195)
T ss_pred             CEEEEECCEEEEEECCcc--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCceEeCcCHHHHhcccc-c--chh
Confidence            568899999999999996  699999999999999999999999999 9999999999999999999876422 1  113


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSAT  161 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~  161 (243)
                      ...+.+.+++++.++..+|||||+++||+|.|+|++++++||+||++++ ++|++||+++|+.+|+++..++++++| ..
T Consensus        75 ~~~~~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~-~~~~~pe~~~G~~p~~g~~~~l~~~~g-~~  152 (195)
T cd06558          75 ARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAED-AKFGLPEVKLGLVPGGGGTQRLPRLVG-PA  152 (195)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCC-CEEechhhhcCCCCCCcHHHHHHHHhC-HH
Confidence            5667888999999999999999999999999999999999999999987 899999999999444455689999999 99


Q ss_pred             HHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHH
Q 026137          162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQL  205 (243)
Q Consensus       162 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~  205 (243)
                      .+.+++++|++++++||+++|||+++++. +++.+++.++++++
T Consensus       153 ~a~~~~l~g~~~~a~ea~~~Glv~~~~~~-~~l~~~a~~~a~~~  195 (195)
T cd06558         153 RARELLLTGRRISAEEALELGLVDEVVPD-EELLAAALELARRL  195 (195)
T ss_pred             HHHHHHHcCCccCHHHHHHcCCCCeecCh-hHHHHHHHHHHhhC
Confidence            99999999999999999999999999998 88999999998763

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=1.5e-41  Score=321.14  Aligned_cols=192  Identities=24%  Similarity=0.389  Sum_probs=170.5

Q ss_pred             eeee-eCCEEEEEEcCC-CCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecC-CCccccCCChhhHHHcCCCcchH
Q 026137            3 TSEK-HGDVFVLTLTGS-SNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSH-GKFFSNGFDLAWAQAAGSRTGAR   79 (243)
Q Consensus         3 ~~~~-~~~v~~i~ln~p-~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~-g~~F~~G~D~~~~~~~~~~~~~~   79 (243)
                      .+++ +++|++|||||| +  +.|++|.+|+.+|.+++++++.|++++ +||++|. |++||+|+|++++.....    .
T Consensus         8 ~~~~~~~~va~itlnrp~~--~~Nal~~~~~~~L~~~l~~~~~d~~vr-~vVl~~~~~~~F~aG~Dl~~~~~~~~----~   80 (708)
T PRK11154          8 TLNVREDNIAVITIDVPGE--KMNTLKAEFAEQVRAILKQLREDKELK-GVVFISGKPDNFIAGADINMLAACKT----A   80 (708)
T ss_pred             EEEEcCCCEEEEEECCCCC--CCcCCCHHHHHHHHHHHHHHHhCCCce-EEEEecCCCCCcccCcChHHhhccCC----H
Confidence            4566 689999999999 6  889999999999999999999999999 8999886 489999999998754211    1


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecC-ccceeccccccCCCCChhh-HHHHHHHh
Q 026137           80 ERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRD-KGVLYMSEVDIGLTLPDYC-AALFREKV  157 (243)
Q Consensus        80 ~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~-~a~f~~p~~~~G~~~p~~g-~~~l~~~~  157 (243)
                      .....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ +++|++||+++|+ +|++| ++++++++
T Consensus        81 ~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl-~p~~gg~~~L~r~v  159 (708)
T PRK11154         81 QEAEALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGL-LPGSGGTQRLPRLI  159 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCC-CCCccHHhHHHhhc
Confidence            222334556778899999999999999999999999999999999999987 3689999999999 67765 67999999


Q ss_pred             CCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHH
Q 026137          158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQ  204 (243)
Q Consensus       158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~  204 (243)
                      | ..+|++++++|++++|+||+++||||+++++ +++.+++.++|++
T Consensus       160 G-~~~A~~llltG~~i~a~eA~~~GLv~~vv~~-~~l~~~a~~~A~~  204 (708)
T PRK11154        160 G-VSTALDMILTGKQLRAKQALKLGLVDDVVPH-SILLEVAVELAKK  204 (708)
T ss_pred             C-HHHHHHHHHhCCcCCHHHHHHCCCCcEecCh-HHHHHHHHHHHHh
Confidence            9 9999999999999999999999999999998 8899999999988

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=100.00  E-value=1.8e-41  Score=319.98  Aligned_cols=190  Identities=23%  Similarity=0.375  Sum_probs=168.5

Q ss_pred             eeeeCCEEEEEEcCC-CCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEE-ecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            4 SEKHGDVFVLTLTGS-SNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFIT-TSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         4 ~~~~~~v~~i~ln~p-~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl-~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      .+.+++|++|||||| +  +.|++|.+|+.+|.+++++++.|++++ +||+ +|.|++||+|+|++++.....    ...
T Consensus         5 ~~~~~~Va~itlnrp~~--~~Nal~~~~~~eL~~~l~~~~~d~~vr-~VVl~~g~g~~FcaG~Dl~~~~~~~~----~~~   77 (699)
T TIGR02440         5 TVREDGIAILTIDVPGE--KMNTLKAEFADQVSEILSQLKRDKSIR-GLVLVSGKPDNFIAGADISMLAACQT----AGE   77 (699)
T ss_pred             EEcCCCEEEEEECCCCC--CCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEEeCCCCceeeccCchhhhccCC----hhH
Confidence            345789999999999 6  799999999999999999999999999 6765 788899999999998854211    122


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecC-ccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRD-KGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~-~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                      ...+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ +++|++||+++|+ +|++| ++++++++| 
T Consensus        78 ~~~~~~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl-~p~~g~~~~L~r~vG-  155 (699)
T TIGR02440        78 AKALAQQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGL-LPGSGGTQRLPRLIG-  155 (699)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccC-CCCccHHHHHHHhcC-
Confidence            3344556788899999999999999999999999999999999999976 4799999999999 67776 579999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHH
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGK  203 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~  203 (243)
                      ..++++++++|++++|+||+++||||+++|+ +++++++.++|+
T Consensus       156 ~~~A~~llltG~~~~a~eA~~~GLV~~vv~~-~~l~~~a~~~A~  198 (699)
T TIGR02440       156 VSTALDMILTGKQLRAKQALKLGLVDDVVPQ-SILLDTAVEMAL  198 (699)
T ss_pred             HHHHHHHHHcCCcCCHHHHHhCCCCcEecCh-hHHHHHHHHHHH
Confidence            9999999999999999999999999999998 889999999998

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=2.3e-41  Score=298.55  Aligned_cols=196  Identities=18%  Similarity=0.193  Sum_probs=170.5

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++.++++.+||||||+  +.|++|.+|+.+|.++++.++.|++++ +|||+|.|++||+|+|++.+..... ..+...
T Consensus        44 v~~e~~~~~~~ItLNRP~--~lNALs~~m~~eL~~al~~~~~D~~vr-vVVL~G~GkaFcAGgDl~~l~~~~~-~~~~~~  119 (407)
T PLN02851         44 VLVEGRAKSRAAILNRPS--SLNALTIPMVARLKRLYESWEENPDIG-FVLMKGSGRAFCSGADVVSLYHLIN-EGNVEE  119 (407)
T ss_pred             eEEEEECCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCccCCcCHHHHHhhcc-ccchHH
Confidence            457788999999999998  899999999999999999999999999 9999999999999999999865322 111233


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhH-HHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCA-ALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~-~~l~~~~g~~  160 (243)
                      ...++...+++...+.++|||+||++||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+ +++++..| .
T Consensus       120 ~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~-a~famPE~~iGl-~PdvG~s~~L~rl~g-~  196 (407)
T PLN02851        120 CKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDK-TVFAHPEVQMGF-HPDAGASYYLSRLPG-Y  196 (407)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCC-ceEecchhccCC-CCCccHHHHHHHhcC-H
Confidence            4456667788888999999999999999999999999999999999987 899999999999 688775 67888888 5


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhc
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAG  207 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~  207 (243)
                       .++++++||++++|+||+++||+++++++ +++ +.+.+.+.++..
T Consensus       197 -~g~~L~LTG~~i~a~eA~~~GLa~~~v~~-~~l-~~l~~~l~~~~~  240 (407)
T PLN02851        197 -LGEYLALTGQKLNGVEMIACGLATHYCLN-ARL-PLIEERLGKLLT  240 (407)
T ss_pred             -HHHHHHHhCCcCCHHHHHHCCCceeecCH-hhH-HHHHHHHHhhcc
Confidence             48999999999999999999999999998 666 666666666544

>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=2.1e-42  Score=272.14  Aligned_cols=210  Identities=19%  Similarity=0.321  Sum_probs=193.2

Q ss_pred             eeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecC-CCccccCCChhhHHHcCCCcchHHHHHH
Q 026137            6 KHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSH-GKFFSNGFDLAWAQAAGSRTGARERVHY   84 (243)
Q Consensus         6 ~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~-g~~F~~G~D~~~~~~~~~~~~~~~~~~~   84 (243)
                      .+.||.+|.+|||.  +.|+++.-|+++|.++++++..|+.+| +|++++. ++.||+|+|+++...+ +    +.....
T Consensus        37 ~~~GItvl~mNRpa--~kNsl~r~~~~~l~~~l~~lk~D~~~R-vvilrS~vpgvFCaGADLKER~~M-s----~~Ev~~  108 (291)
T KOG1679|consen   37 KDEGITILNMNRPA--KKNSLGRVFVKQLREVLDELKYDNKVR-VVILRSLVPGVFCAGADLKERKTM-S----PSEVTR  108 (291)
T ss_pred             CCCCeEEEecCChh--hhccHHHHHHHHHHHHHHHHhhCCcee-EEEEecCCCceeecCcchHhhhcC-C----HHHHHH
Confidence            47799999999998  999999999999999999999999999 8999886 6999999999998765 2    567788


Q ss_pred             HHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCHHHH
Q 026137           85 MFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSATAR  163 (243)
Q Consensus        85 ~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~~~a  163 (243)
                      |.+.+..++..+.++|.||||+|+|.++|||++++++||+|+|+++ ++++++|+++++ +|+.| +++|+|.+| ...+
T Consensus       109 fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~-akmGLvET~lai-iPGaGGtQRLpR~vg-~ala  185 (291)
T KOG1679|consen  109 FVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASS-AKMGLVETKLAI-IPGAGGTQRLPRIVG-VALA  185 (291)
T ss_pred             HHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhh-ccccccccceee-ecCCCccchhHHHHh-HHHH
Confidence            9999999999999999999999999999999999999999999987 999999999999 78876 579999999 9999


Q ss_pred             HHHHhcCcCCCHHHHHHcCchhhhcCCh---hHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137          164 RDVLLRAKKIKGEEALRMGLVEAAYDSE---ERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       164 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~---~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      +|+++|++.+++.||...|||+.+|...   |...++++++|++|..+.  |.+++..|..++..+.-
T Consensus       186 KELIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~g--Piavr~aKlAIn~G~ev  251 (291)
T KOG1679|consen  186 KELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQG--PIAVRLAKLAINLGMEV  251 (291)
T ss_pred             HhHhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCC--chhhhHHHHHhccCcee
Confidence            9999999999999999999999999763   367888999999999887  89999999999876543

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=100.00  E-value=6.2e-41  Score=316.40  Aligned_cols=197  Identities=20%  Similarity=0.309  Sum_probs=174.8

Q ss_pred             ceeee-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEK-HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      +.++. +++|++|+||||+  +.|++|.+|+.+|.+++++++.|++++ +|||+|.|++||+|+|++++..... .. ..
T Consensus         8 i~~~~~~~gva~Itlnrp~--~~Nal~~~~~~eL~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~-~~   82 (714)
T TIGR02437         8 IQVTALEDGIAELKFDAPG--SVNKFDRATLASLDQALDAIKAQSSLK-GVILTSGKDAFIVGADITEFLGLFA-LP-DA   82 (714)
T ss_pred             EEEEEccCCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCccccCcCHHHHhhccc-CC-HH
Confidence            45553 7899999999998  899999999999999999999999999 9999999999999999999864211 11 22


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                      ....+.+..++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        83 ~~~~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~-a~fglPEv~lGl-~Pg~Ggt~rL~rliG-  159 (714)
T TIGR02437        83 ELIQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDT-AKIGLPETKLGI-MPGFGGTVRLPRVIG-  159 (714)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCC-CEEecchhhcCC-CCCccHHHHHHHHhC-
Confidence            23344556788999999999999999999999999999999999999987 999999999999 78876 579999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhc
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAG  207 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~  207 (243)
                      ..+|++++++|++++|+||+++||||++++. +++.+++.++++++..
T Consensus       160 ~~~A~~llltG~~~~A~eA~~~GLvd~vv~~-~~l~~~a~~~a~~~~~  206 (714)
T TIGR02437       160 ADNALEWIASGKENRAEDALKVGAVDAVVTA-DKLGAAALQLLKDAIN  206 (714)
T ss_pred             HHHHHHHHHcCCcCCHHHHHHCCCCcEeeCh-hHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999998 8899999999988543

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=100.00  E-value=2e-40  Score=313.59  Aligned_cols=199  Identities=24%  Similarity=0.355  Sum_probs=173.0

Q ss_pred             ceeeeeCCEEEEEEcCCCCCC-CCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVD-EHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~-~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      +.++++++|++||||+|+  + .|++|.+|+.+|.+++++++.|++++++||+||.|++||+|+|++++.....    ..
T Consensus        15 ~~~~~~~gVa~itlnrP~--~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~----~~   88 (737)
T TIGR02441        15 RHYEVKGDVAVVKIDSPN--SKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKT----AQ   88 (737)
T ss_pred             EEEEEECCEEEEEEcCCC--CCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCC----hH
Confidence            567889999999999994  3 7999999999999999999999999934567999999999999999864211    22


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCc-cceeccccccCCCCChhh-HHHHHHHhC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDK-GVLYMSEVDIGLTLPDYC-AALFREKVG  158 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~-a~f~~p~~~~G~~~p~~g-~~~l~~~~g  158 (243)
                      ....+...+++++.++.++||||||+|||+|+|||++|+++||+||+++++ ++|++||+++|+ +|++| ++++++++|
T Consensus        89 ~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl-~Pg~Ggt~rLprliG  167 (737)
T TIGR02441        89 EVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGL-LPGAGGTQRLPKLTG  167 (737)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCC-CCCccHhhhHHHhhC
Confidence            334455667889999999999999999999999999999999999999873 589999999999 68776 579999999


Q ss_pred             CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCCh------------hHHHHHHHHHHHHHhcC
Q 026137          159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSE------------ERVAEASMRLGKQLAGR  208 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~------------~~l~~~a~~~a~~~~~~  208 (243)
                       ..+|++++++|++++|+||+++||||+++++.            +++.+.|.+++++++..
T Consensus       168 -~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~  228 (737)
T TIGR02441       168 -VPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANG  228 (737)
T ss_pred             -HHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcc
Confidence             99999999999999999999999999999861            45788888888777543

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=5.9e-40  Score=265.76  Aligned_cols=222  Identities=21%  Similarity=0.312  Sum_probs=196.9

Q ss_pred             ceeeeeCCEEEEEEc-CCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcch--
Q 026137            2 CTSEKHGDVFVLTLT-GSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGA--   78 (243)
Q Consensus         2 i~~~~~~~v~~i~ln-~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~--   78 (243)
                      +.+++++|++.|.+| ||.  +.|+++.+++.++..+++.+.+|+++. +++++|.|++||+|.|+..+......+..  
T Consensus         9 ~vv~~~~g~~~I~~~~~Pk--k~Nal~~e~y~~i~~al~~a~~dds~~-~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~   85 (266)
T KOG0016|consen    9 IVVTRENGPFFIALNIRPK--KKNALNREDYVYIQRALEEANDDDSVS-ITVLSSNGSYFCSGLDFSPFAKALDDDANEE   85 (266)
T ss_pred             eEEEecCCcEEEEecCCCc--ccccccHHHHHHHHHHHHHhhcccceE-EEEEecCccEEeeccccchhhhcCCCccccc
Confidence            467889999999999 998  899999999999999999999999987 99999999999999999988775331111  


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHh
Q 026137           79 RERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKV  157 (243)
Q Consensus        79 ~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~  157 (243)
                      ......+...+..++..+.++|||+||+|||+++|.|..+...||+++|++ +++|..|+..+|. .|.++ ++.+|.+|
T Consensus        86 ~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~D-ka~F~TPfa~lGq-~PEG~Ss~t~p~im  163 (266)
T KOG0016|consen   86 SDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASD-KAWFQTPFAKLGQ-SPEGCSSVTLPKIM  163 (266)
T ss_pred             chhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEecc-ceEEeccchhcCC-CCCcceeeeehHhh
Confidence            112223334445588899999999999999999999999999999999995 5999999999999 57776 57999999


Q ss_pred             CCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHhh
Q 026137          158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGL  232 (243)
Q Consensus       158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~~  232 (243)
                      | ...|.||++.|++++|+||.+.|||+++++. +++.+.+++.++++++.+  |.++...|++++..+.+++..
T Consensus       164 G-~~~A~E~ll~~~kltA~Ea~~~glVskif~~-~tf~~~v~~~ikq~s~l~--p~sl~~~K~L~rs~~k~~l~~  234 (266)
T KOG0016|consen  164 G-SASANEMLLFGEKLTAQEACEKGLVSKIFPA-ETFNEEVLKKIKQYSKLS--PESLLGMKKLLRSNIKEELIK  234 (266)
T ss_pred             c-hhhHHHHHHhCCcccHHHHHhcCchhhhcCh-HHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHH
Confidence            9 9999999999999999999999999999998 899999999999999987  999999999999988888774

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=6.8e-40  Score=298.63  Aligned_cols=203  Identities=17%  Similarity=0.205  Sum_probs=169.5

Q ss_pred             ceeeeeCCEEEEEEcCCCC--------CCCCCCCHHHHHHHHHHHHHHH-hcCCCCEEEEEecC-CCccccCCChhhHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSN--------VDEHRLGPSAIDSILSAIAQAK-AEATPGSAFITTSH-GKFFSNGFDLAWAQA   71 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~--------~~~N~l~~~~~~~l~~~l~~~~-~~~~~~~~vvl~g~-g~~F~~G~D~~~~~~   71 (243)
                      +.++++++|++||||||++        ++.|++|.+|+.+|.+++++++ .++++| +||+||. |++||+|.|++++..
T Consensus        13 v~~~~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vR-vVVLtg~~Gk~FcaG~DL~~~~~   91 (546)
T TIGR03222        13 WKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVR-TVVMTSGKDRVFCSGANIFMLGL   91 (546)
T ss_pred             EEEEeeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCee-EEEEecCCCCCCcCCcCHHHHhc
Confidence            5678899999999999731        1679999999999999999999 789999 9999987 589999999998753


Q ss_pred             cCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecC-ccceeccccc-cCCCCChhh
Q 026137           72 AGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRD-KGVLYMSEVD-IGLTLPDYC  149 (243)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~-~a~f~~p~~~-~G~~~p~~g  149 (243)
                      ... ................+...+.++||||||+|||+|+|||++|+++||+||++++ +++|++||++ +|+ +|++|
T Consensus        92 ~~~-~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl-~P~~g  169 (546)
T TIGR03222        92 STH-AWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGV-LPGTG  169 (546)
T ss_pred             ccc-chhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCc-CCccc
Confidence            211 0001111111122234556778999999999999999999999999999999986 3799999997 999 67776


Q ss_pred             -HHHHH--HHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCC
Q 026137          150 -AALFR--EKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRK  209 (243)
Q Consensus       150 -~~~l~--~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~  209 (243)
                       ..+++  +++| ..+|++++++|++++|+||+++||||++||+ +++.+++.++|+++++.+
T Consensus       170 g~~~l~~~~~vg-~~~A~~llltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~lA~~la~~~  230 (546)
T TIGR03222       170 GLTRVTDKRRVR-RDHADIFCTIEEGVRGKRAKEWRLVDEVVKP-SQFDAAIAERAAELAAQS  230 (546)
T ss_pred             hhhhccccchhC-HHHHHHHHHcCCCccHHHHHHcCCceEEeCh-HHHHHHHHHHHHHHHhCC
Confidence             45676  7999 9999999999999999999999999999998 889999999999999986

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=3.4e-39  Score=294.88  Aligned_cols=202  Identities=17%  Similarity=0.210  Sum_probs=168.5

Q ss_pred             ceeeeeCCEEEEEEcCCCCC--------CCCCCCHHHHHHHHHHHHHHH-hcCCCCEEEEEecCC-CccccCCChhhHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNV--------DEHRLGPSAIDSILSAIAQAK-AEATPGSAFITTSHG-KFFSNGFDLAWAQA   71 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~--------~~N~l~~~~~~~l~~~l~~~~-~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~   71 (243)
                      +.++++++|++||||||+++        +.|++|.+|+.+|.+++++++ .+++++ +||+||.+ ++||+|.|++.+..
T Consensus        17 ~~~e~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vr-vVVLtg~ggk~FcaG~DL~~~~~   95 (550)
T PRK08184         17 WKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVR-TVVVTSAKDRVFCSGANIFMLGG   95 (550)
T ss_pred             EEEEeeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeE-EEEEecCCCCCCCCccCHHhHhc
Confidence            46778899999999976311        679999999999999999999 789999 99999974 99999999998754


Q ss_pred             cCCCcchHHHHHHHH-HHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecC-ccceeccccc-cCCCCChh
Q 026137           72 AGSRTGARERVHYMF-KSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRD-KGVLYMSEVD-IGLTLPDY  148 (243)
Q Consensus        72 ~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~-~a~f~~p~~~-~G~~~p~~  148 (243)
                      ... .. ......+. .....+...+.++||||||+|||+|+|||++|+++||+||++++ +++|++||++ +|+ +|++
T Consensus        96 ~~~-~~-~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl-~P~~  172 (550)
T PRK08184         96 SSH-AW-KVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGV-LPGT  172 (550)
T ss_pred             ccc-ch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhcccc-CCCc
Confidence            211 00 11111111 11223456788999999999999999999999999999999976 4789999997 999 6777


Q ss_pred             h-HHHHH--HHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCC
Q 026137          149 C-AALFR--EKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRK  209 (243)
Q Consensus       149 g-~~~l~--~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~  209 (243)
                      | ..+++  +++| ..++++++++|++++|+||+++||||++||+ +++.+++.++|++++..+
T Consensus       173 gg~~rl~~~~~vg-~~~A~~llltG~~i~AeeA~~~GLVd~vv~~-d~l~~~a~~~A~~ia~~~  234 (550)
T PRK08184        173 GGLTRVTDKRKVR-RDLADIFCTIEEGVRGKRAVDWRLVDEVVKP-SKFDAKVAERAAELAAAS  234 (550)
T ss_pred             chHHHhhhhhhcC-HHHHHHHHHhCCcccHHHHHHcCCccEeeCH-HHHHHHHHHHHHHHHhCC
Confidence            6 56777  7799 9999999999999999999999999999998 899999999999999886

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=100.00  E-value=6.1e-40  Score=258.61  Aligned_cols=219  Identities=20%  Similarity=0.335  Sum_probs=189.4

Q ss_pred             ceeeee-CCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecC--C-CccccCCChhhHHHcCCCcc
Q 026137            2 CTSEKH-GDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSH--G-KFFSNGFDLAWAQAAGSRTG   77 (243)
Q Consensus         2 i~~~~~-~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~--g-~~F~~G~D~~~~~~~~~~~~   77 (243)
                      |++++. ++|+.|++|||+  ..|++.+....||.+++..+..|++|. |||+||.  | .+||+|+|-+-........+
T Consensus        20 I~Y~~~~~giakItinRPe--vrNAfrP~TV~Em~~Af~~Ar~d~~vG-vi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~   96 (282)
T COG0447          20 ITYEKSVDGIAKITINRPE--VRNAFRPKTVDEMIDAFADARDDPNVG-VILLTGNGDGDKAFCSGGDQKVRGDSGGYVD   96 (282)
T ss_pred             eEEeeccCceEEEEecChh--hhccCCCccHHHHHHHHHhhhcCCCcc-EEEEecCCCCCeeeecCCCceecccCCCccC
Confidence            567787 899999999999  999999999999999999999999999 9999984  4 99999999875543111011


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHh
Q 026137           78 ARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKV  157 (243)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~  157 (243)
                      +...-   .-..-++-+.|+.+||||||.|+|+++|||-.|-+.||+.||+++ +.|++...++|---+++|+.+|.|.+
T Consensus        97 d~~~~---rLnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~n-A~FgQTgp~VGSFD~G~Gs~ylar~V  172 (282)
T COG0447          97 DDGIP---RLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADN-AIFGQTGPKVGSFDGGYGSSYLARIV  172 (282)
T ss_pred             CccCc---ccchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhc-chhcCCCCCcccccCcccHHHHHHHh
Confidence            11111   112344556788999999999999999999999999999999988 99999999999745788899999999


Q ss_pred             CCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137          158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~  231 (243)
                      | +++|+|+.+.++.++|+||+++|+||.|||. ++|++++.+|+++|..++  |.+++..|..++.+...-..
T Consensus       173 G-qKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~-~~LE~e~v~W~~E~l~kS--P~AlR~LK~Afnad~DGlaG  242 (282)
T COG0447         173 G-QKKAREIWFLCRQYDAEEALDMGLVNTVVPH-ADLEKETVQWAREMLAKS--PTALRMLKAAFNADCDGLAG  242 (282)
T ss_pred             h-hhhhHHhhhhhhhccHHHHHhcCceeeeccH-HHHHHHHHHHHHHHHhcC--hHHHHHHHHHhcCCCchhhH
Confidence            9 9999999999999999999999999999998 899999999999999998  99999999999987655443

>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=4.8e-35  Score=228.99  Aligned_cols=211  Identities=24%  Similarity=0.335  Sum_probs=187.1

Q ss_pred             eeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHH
Q 026137            4 SEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVH   83 (243)
Q Consensus         4 ~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~   83 (243)
                      ++.+++|-.|+||+|.  +.|.++..|+.+|.+.|....++.++| +|||+..|+.||+|-|++++...   ++ .+.-.
T Consensus        36 ~~~~~gvR~i~l~npK--k~NtLSLaM~~~Lq~~ll~d~d~~dlr-~viita~GkifSaGH~LKELt~e---~g-~d~ha  108 (287)
T KOG1682|consen   36 VKEHNGVREITLNNPK--KLNTLSLAMMCALQDALLKDKDNLDLR-CVIITAQGKIFSAGHNLKELTNE---PG-SDIHA  108 (287)
T ss_pred             cccccceeeeeecCcc--ccchhhHHHHHHHHHHHhhccccccee-EEEEecCCccccccccHHHhhcC---cc-chHHH
Confidence            4567899999999998  899999999999999999999999999 99999999999999999999763   22 33334


Q ss_pred             HHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHH
Q 026137           84 YMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATAR  163 (243)
Q Consensus        84 ~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a  163 (243)
                      ..+....+++.-|+++|+|||+-|||++..+|+.|...||+++|+++ +.|..|...+|+ +....+.-+.|.++ +..+
T Consensus       109 evFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~-SkF~tPG~~vGl-FCSTPGvAlaRavp-Rkva  185 (287)
T KOG1682|consen  109 EVFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKN-SKFSTPGAGVGL-FCSTPGVALARAVP-RKVA  185 (287)
T ss_pred             HHHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecC-ccccCCCCceee-EecCcchhHhhhcc-hhHH
Confidence            55667788899999999999999999999999999999999999987 899999999999 65555567889999 9999


Q ss_pred             HHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          164 RDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       164 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      .+|++||++++++||+..||++++||. +++..++.+++..|..++  +..+..-|.-++++..
T Consensus       186 ~~ML~Tg~Pi~~eeAl~sGlvskvVp~-~el~~e~~~i~~~i~~~s--rav~slgk~f~y~q~~  246 (287)
T KOG1682|consen  186 AYMLMTGLPITGEEALISGLVSKVVPA-EELDKEIEEITNAIKAKS--RAVISLGKEFYYKQLA  246 (287)
T ss_pred             HHHHHhCCCCchHHHHHhhhhhhcCCH-HHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998 899999999999998887  6667777777666543

>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=99.97  E-value=2.2e-30  Score=218.38  Aligned_cols=185  Identities=23%  Similarity=0.269  Sum_probs=163.3

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecC-CCccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSH-GKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~-g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.++..+...+||||||.  ..|++|.+|...+.-.|..++.++.++ +||+.|. +++||+|+|+........ +++..
T Consensus        40 VL~e~~~~~r~itLNRPK--aLNAlnleMv~~~~~~L~~we~s~~~k-~vIlkgs~~raFCAGgDI~~~ae~~~-d~~~~  115 (401)
T KOG1684|consen   40 VLVEGKGCARVITLNRPK--ALNALNLEMVLSIYPKLVEWEKSPLVK-LVILKGSGGRAFCAGGDIKAVAESIK-DKETP  115 (401)
T ss_pred             eEEecCCceeEEEecCch--hhccccHHHHHHHHHHHHhhccCCCce-EEEEecCCCceeecCccHHHHHHHhh-cCCch
Confidence            456778889999999997  799999999999999999999999999 8999988 599999999986654422 33345


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCH
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSA  160 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~  160 (243)
                      ....++..-+.+...|.++.||.||.++|..+|||..|+..--||||+++ +.|.+||..+|+ +|+.|+.++..+++ .
T Consensus       116 ~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATer-T~~AmPEt~IGl-fPDVG~Sy~lsrlp-g  192 (401)
T KOG1684|consen  116 EVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATER-TVFAMPETGIGL-FPDVGASYFLSRLP-G  192 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeecc-ceeccccccccc-ccCccceeehhhCc-c
Confidence            66778888999999999999999999999999999999999999999987 899999999999 89999765555554 4


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERV  194 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l  194 (243)
                      ..+.++.+||+++++.||+..||.+.-|++ +++
T Consensus       193 ~lg~YLgLTG~rl~GaD~~~~GlATHyv~S-~~l  225 (401)
T KOG1684|consen  193 YLGLYLGLTGQRLSGADALRCGLATHYVPS-EKL  225 (401)
T ss_pred             HHHHhhhhccceecchHHHHhcchhhccch-hhh
Confidence            777899999999999999999999999998 554

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.87  E-value=2e-21  Score=156.39  Aligned_cols=152  Identities=22%  Similarity=0.252  Sum_probs=118.9

Q ss_pred             EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHH
Q 026137           10 VFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSF   89 (243)
Q Consensus        10 v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~   89 (243)
                      |++|+++.+       ++..+...+.+.|+.++.++ ++ .|++.    .=|.|+++..                    .
T Consensus         1 ~~vv~i~g~-------I~~~~~~~l~~~l~~a~~~~-~~-~vvl~----InSpGG~v~~--------------------~   47 (187)
T cd07020           1 VYVLEINGA-------ITPATADYLERAIDQAEEGG-AD-ALIIE----LDTPGGLLDS--------------------T   47 (187)
T ss_pred             CEEEEEeeE-------EChHHHHHHHHHHHHHHhCC-CC-EEEEE----EECCCCCHHH--------------------H
Confidence            356777755       77788899999999998765 67 56663    2345554442                    1


Q ss_pred             HHHHHHHhcCCCcEEEEEC---CccchhHHHHHHhcCEEEEecCccceeccccccCCCCChh---------------hHH
Q 026137           90 RPLVAAMMDLPMPTVAAVN---GHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDY---------------CAA  151 (243)
Q Consensus        90 ~~l~~~l~~~~kp~Ia~v~---G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~---------------g~~  151 (243)
                      ..++..|..+|||||++++   |+|.|+|+.++++||+++++++ ++|+.++...+. .+..               ...
T Consensus        48 ~~i~~~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~-a~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  125 (187)
T cd07020          48 REIVQAILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPG-TNIGAAHPVAIG-GGGGSDPVMEKKILNDAVAYIR  125 (187)
T ss_pred             HHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCC-CcEEeccccccC-CCCcchHHHHHHHHHHHHHHHH
Confidence            2455567789999999999   9999999999999999999988 899999998554 3322               244


Q ss_pred             HHHHHhCCH--HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHH
Q 026137          152 LFREKVGSA--TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEA  197 (243)
Q Consensus       152 ~l~~~~g~~--~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~  197 (243)
                      .++++.| .  ..+++++++|+.|+++||+++||||+++++.+++...
T Consensus       126 ~l~~~~G-~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~~  172 (187)
T cd07020         126 SLAELRG-RNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLKK  172 (187)
T ss_pred             HHHHHcC-CCHHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHHH
Confidence            6888888 5  6889999999999999999999999999984356543

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.85  E-value=1.3e-20  Score=150.42  Aligned_cols=143  Identities=19%  Similarity=0.204  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEC
Q 026137           29 SAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVN  108 (243)
Q Consensus        29 ~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~  108 (243)
                      ..+.+|.++++++++|++++ +||+++    +|.|.|+....                 .+.+++..+.+++|||||+++
T Consensus        22 ~~~~~l~~~l~~a~~d~~v~-~vvl~~----~~~gg~~~~~~-----------------~~~~~i~~~~~~~kpVia~v~   79 (177)
T cd07014          22 VSGDTTAAQIRDARLDPKVK-AIVLRV----NSPGGSVTASE-----------------VIRAELAAARAAGKPVVASGG   79 (177)
T ss_pred             cCHHHHHHHHHHHhcCCCce-EEEEEe----eCCCcCHHHHH-----------------HHHHHHHHHHhCCCCEEEEEC
Confidence            45789999999999999999 899986    78898766421                 234567778889999999999


Q ss_pred             CccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HH--------HHHHHhC-CHHHHHHHHhcCcCCCHHHH
Q 026137          109 GHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AA--------LFREKVG-SATARRDVLLRAKKIKGEEA  178 (243)
Q Consensus       109 G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~--------~l~~~~g-~~~~a~~l~l~g~~~~a~eA  178 (243)
                      |.|.|+|+.++++||+++++++ ++|+.+.+..+. -+... ..        .+++..| .....++++..|..++|++|
T Consensus        80 G~a~g~g~~la~a~D~i~a~~~-a~~~~~G~~~~~-~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A  157 (177)
T cd07014          80 GNAASGGYWISTPANYIVANPS-TLVGSIGIFGVQ-LADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDA  157 (177)
T ss_pred             CchhHHHHHHHHhCCEEEECCC-CeEEEechHhhH-HHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHH
Confidence            9999999999999999999987 899998776653 12111 11        2333333 15667888999999999999


Q ss_pred             HHcCchhhhcCChhHHHH
Q 026137          179 LRMGLVEAAYDSEERVAE  196 (243)
Q Consensus       179 ~~~Glv~~vv~~~~~l~~  196 (243)
                      ++.||||++.+. +++.+
T Consensus       158 ~~~GLVD~v~~~-~e~~~  174 (177)
T cd07014         158 KANGLVDSLGSF-DDAVA  174 (177)
T ss_pred             HHcCCcccCCCH-HHHHH
Confidence            999999999986 66654

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.73  E-value=1.2e-17  Score=136.83  Aligned_cols=161  Identities=19%  Similarity=0.222  Sum_probs=112.1

Q ss_pred             CEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHH
Q 026137            9 DVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKS   88 (243)
Q Consensus         9 ~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~   88 (243)
                      +|++|.++.|=....+..+..++.++.++|+++..||+++ +|||+    .||+|+|+..+..                 
T Consensus         1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~-~ivL~----~~s~Gg~~~~~~~-----------------   58 (211)
T cd07019           1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVK-AIVLR----VNSPGGSVTASEV-----------------   58 (211)
T ss_pred             CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCce-EEEEE----EcCCCcCHHHHHH-----------------
Confidence            4666776654322333334557899999999999999999 89996    7999999876432                 


Q ss_pred             HHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceecccc------------ccCCCC--Chh-h----
Q 026137           89 FRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEV------------DIGLTL--PDY-C----  149 (243)
Q Consensus        89 ~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~------------~~G~~~--p~~-g----  149 (243)
                      +.+.+..+..++||+|+.++|.|.|+|+.|+++||.++++++ ++++...+            ++|+.+  +-. |    
T Consensus        59 ~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~-a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~  137 (211)
T cd07019          59 IRAELAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPS-TLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADV  137 (211)
T ss_pred             HHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCC-CEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccC
Confidence            234566788899999999999999999999999999999987 66653221            223210  000 0    


Q ss_pred             ---------H-HHHH-----------------HHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHH
Q 026137          150 ---------A-ALFR-----------------EKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVA  195 (243)
Q Consensus       150 ---------~-~~l~-----------------~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~  195 (243)
                               . ..+.                 |.+. +.. .+-+..|..+++++|++.||||++-.. ++..
T Consensus       138 ~~~~~~s~e~r~~~~~~ld~~~~~f~~~Va~~R~~~-~~~-l~~~~~~~~~~~~~A~~~GLvD~i~~~-~~~~  207 (211)
T cd07019         138 SITRALPPEAQLGLQLSIENGYKRFITLVADARHST-PEQ-IDKIAQGHVWTGQDAKANGLVDSLGDF-DDAV  207 (211)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-HHH-HHHhcCCcEEeHHHHHHcCCcccCCCH-HHHH
Confidence                     0 0111                 1222 222 334567889999999999999999876 5443

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.68  E-value=4e-16  Score=122.54  Aligned_cols=135  Identities=21%  Similarity=0.212  Sum_probs=103.3

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026137           26 LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVA  105 (243)
Q Consensus        26 l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia  105 (243)
                      +++.++.+|.+.|+.++.|+.++ .|++..    .|.|.|+...                    .++...+..++||||+
T Consensus         8 I~~~~~~~l~~~l~~a~~d~~~~-~ivl~~----~s~Gg~~~~~--------------------~~i~~~l~~~~kpvva   62 (161)
T cd00394           8 IEDVSADQLAAQIRFAEADNSVK-AIVLEV----NTPGGRVDAG--------------------MNIVDALQASRKPVIA   62 (161)
T ss_pred             EccchHHHHHHHHHHHHhCCCCc-eEEEEE----ECCCcCHHHH--------------------HHHHHHHHHhCCCEEE
Confidence            77789999999999999999999 788854    5777765432                    3345566778899999


Q ss_pred             EECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCCh----------hh---HHHHHHH------hCCHHHHHHH
Q 026137          106 AVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPD----------YC---AALFREK------VGSATARRDV  166 (243)
Q Consensus       106 ~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~----------~g---~~~l~~~------~g~~~~a~~l  166 (243)
                      .++|.|.++|+.|+++||.|++.++ +.|++.....+.....          .-   ...+...      +. .....+.
T Consensus        63 ~~~g~~~s~g~~la~~~d~~~~~~~-a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~-~~~~~~~  140 (161)
T cd00394          63 YVGGQAASAGYYIATAANKIVMAPG-TRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQT-TEKLEED  140 (161)
T ss_pred             EECChhHHHHHHHHhCCCEEEECCC-CEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHH
Confidence            9999999999999999999999987 8899887776552111          00   0112211      23 3446777


Q ss_pred             HhcCcCCCHHHHHHcCchhhh
Q 026137          167 LLRAKKIKGEEALRMGLVEAA  187 (243)
Q Consensus       167 ~l~g~~~~a~eA~~~Glv~~v  187 (243)
                      +..+..++++||+++||||++
T Consensus       141 ~~~~~~~~a~eA~~~GLvD~i  161 (161)
T cd00394         141 IEKDLVLTAQEALEYGLVDAL  161 (161)
T ss_pred             hcCCcEEcHHHHHHcCCcCcC
Confidence            888999999999999999975

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.66  E-value=7.9e-16  Score=125.89  Aligned_cols=149  Identities=19%  Similarity=0.301  Sum_probs=107.4

Q ss_pred             EEEEEEcCCCCCCCCCCC---HHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHH
Q 026137           10 VFVLTLTGSSNVDEHRLG---PSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMF   86 (243)
Q Consensus        10 v~~i~ln~p~~~~~N~l~---~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~   86 (243)
                      |++|.++.+       ++   ..++.+|.++|+.++.|++++ +|++++    +|.|+|+....                
T Consensus         2 v~vi~i~g~-------i~~~~~~~~~~l~~~l~~a~~d~~i~-~ivl~~----~s~Gg~~~~~~----------------   53 (208)
T cd07023           2 IAVIDIEGT-------ISDGGGIGADSLIEQLRKAREDDSVK-AVVLRI----NSPGGSVVASE----------------   53 (208)
T ss_pred             EEEEEEEEE-------EcCCCCCCHHHHHHHHHHHHhCCCCc-EEEEEE----ECCCCCHHHHH----------------
Confidence            677777765       44   789999999999999999999 899976    68898876521                


Q ss_pred             HHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceecccc------------ccCCCC---------
Q 026137           87 KSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEV------------DIGLTL---------  145 (243)
Q Consensus        87 ~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~------------~~G~~~---------  145 (243)
                       .+.+.+..+..++|||||+++|.|.|+|+.++++||.++++++ +.|+...+            ++|+.+         
T Consensus        54 -~i~~~i~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~-s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K  131 (208)
T cd07023          54 -EIYREIRRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPT-TITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGK  131 (208)
T ss_pred             -HHHHHHHHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCC-CeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCc
Confidence             2244566778889999999999999999999999999999987 66653222            123310         


Q ss_pred             ----C--hh---hHHHHH-----------------HHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCC
Q 026137          146 ----P--DY---CAALFR-----------------EKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDS  190 (243)
Q Consensus       146 ----p--~~---g~~~l~-----------------~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  190 (243)
                          |  ..   .-..+.                 |.+. ... .+-+..|..+++++|++.||||++...
T Consensus       132 ~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~Va~~R~~~-~~~-~~~~~~~~~~~a~~A~~~gLiD~i~~~  200 (208)
T cd07023         132 DKGSPDRPLTEEERAILQALVDDIYDQFVDVVAEGRGMS-GER-LDKLADGRVWTGRQALELGLVDELGGL  200 (208)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-HHH-HHHhcCCcEEEHHHHHHcCCCcccCCH
Confidence                0  00   000111                 1111 222 233567889999999999999999865

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.65  E-value=2e-15  Score=123.99  Aligned_cols=145  Identities=26%  Similarity=0.248  Sum_probs=99.2

Q ss_pred             CCCC-CCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCC
Q 026137           22 DEHR-LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLP  100 (243)
Q Consensus        22 ~~N~-l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  100 (243)
                      ..|+ ++..++.+|.++|++++.|++++ +||++.    +|.|.++...                 ..+.+.+..+.. +
T Consensus        17 ~~~~~~~~~~~~~l~~~l~~a~~d~~i~-~Vvl~~----~s~gg~~~~~-----------------~~l~~~l~~~~~-~   73 (214)
T cd07022          17 WLEASSGLTSYEGIAAAIRAALADPDVR-AIVLDI----DSPGGEVAGV-----------------FELADAIRAARA-G   73 (214)
T ss_pred             cccCCCCcccHHHHHHHHHHHhhCCCCc-EEEEEE----eCCCCcHHHH-----------------HHHHHHHHHHhc-C
Confidence            3454 56789999999999999999999 888864    6667654432                 122333444444 6


Q ss_pred             CcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccc------------cCCC--------C-----C--hhh--H-
Q 026137          101 MPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVD------------IGLT--------L-----P--DYC--A-  150 (243)
Q Consensus       101 kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~------------~G~~--------~-----p--~~g--~-  150 (243)
                      |||||+++|.|.|+|+.++++||.++++++ +.|+...+.            +|+.        +     |  .+.  . 
T Consensus        74 KpViA~v~g~a~s~gy~lA~~aD~i~a~~~-a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~r  152 (214)
T cd07022          74 KPIVAFVNGLAASAAYWIASAADRIVVTPT-AGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEAR  152 (214)
T ss_pred             CCEEEEECCchhhHHHHHHhcCCEEEEcCC-CeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHH
Confidence            999999999999999999999999999987 776544332            2221        0     0  000  0 


Q ss_pred             HHHH-----------------HHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHH
Q 026137          151 ALFR-----------------EKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERV  194 (243)
Q Consensus       151 ~~l~-----------------~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l  194 (243)
                      ..+.                 |.+. ....++++  |..+++++|++.||||++... +++
T Consensus       153 e~~~~~l~~~~~~f~~~V~~~R~~~-~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~-~~~  209 (214)
T cd07022         153 ARLQAEVDALYAMFVAAVARNRGLS-AAAVRATE--GGVFRGQEAVAAGLADAVGTL-DDA  209 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCC-HHHHHHhh--cCeeeHHHHHHcCCCcccCCH-HHH
Confidence            0111                 1222 33334444  999999999999999999876 444

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=99.61  E-value=3.4e-15  Score=138.77  Aligned_cols=173  Identities=20%  Similarity=0.246  Sum_probs=122.6

Q ss_pred             eeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHH
Q 026137            6 KHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYM   85 (243)
Q Consensus         6 ~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~   85 (243)
                      .+++|++|+++.+-....+..+....+.+.+.|+++..|++++ +||++-.    |.|++...                 
T Consensus       306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~Vk-aIVLrin----SpGGs~~a-----------------  363 (584)
T TIGR00705       306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIK-AVVLRIN----SPGGSVFA-----------------  363 (584)
T ss_pred             CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCce-EEEEEec----CCCCCHHH-----------------
Confidence            4678999999976311234344445678889999999999999 8998743    33332221                 


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccce------eccc------cccCCCCChhh-HH-
Q 026137           86 FKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVL------YMSE------VDIGLTLPDYC-AA-  151 (243)
Q Consensus        86 ~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f------~~p~------~~~G~~~p~~g-~~-  151 (243)
                      .+.+.+.+.++...+||||+.++|.|.+||+.++++||.++|++. +.+      +.+.      .++|+. |... .. 
T Consensus       364 se~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~-t~~GSIGv~~~~~~~~~~l~klGi~-~~~~~t~~  441 (584)
T TIGR00705       364 SEIIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPN-TITGSIGVFSVLPTFENSLDRIGVH-VDGVSTHE  441 (584)
T ss_pred             HHHHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCC-CeeecCEEEEEccCHHHHHHhcCCc-eEEEeccC
Confidence            112233445566788999999999999999999999999999987 555      4442      467874 3322 11 


Q ss_pred             ---------------------------HHHHHhCCHHH-----HHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHH
Q 026137          152 ---------------------------LFREKVGSATA-----RRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASM  199 (243)
Q Consensus       152 ---------------------------~l~~~~g~~~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~  199 (243)
                                                 .+..+++ ..+     +.+.+.+|+.++++||+++||||++-.    + ++|.
T Consensus       442 ~~~~s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va-~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~----~-~~Ai  515 (584)
T TIGR00705       442 LANVSLLRPLTAEDQAIMQLSVEAGYRRFLSVVS-AGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGG----L-DEAV  515 (584)
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-hhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCC----H-HHHH
Confidence                                       1223454 444     667888999999999999999999943    2 6677


Q ss_pred             HHHHHHhcC
Q 026137          200 RLGKQLAGR  208 (243)
Q Consensus       200 ~~a~~~~~~  208 (243)
                      +.|+++++.
T Consensus       516 ~~a~~la~~  524 (584)
T TIGR00705       516 AKAAKLAHC  524 (584)
T ss_pred             HHHHHHcCC
Confidence            788888876

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.59  E-value=7.7e-15  Score=115.20  Aligned_cols=129  Identities=17%  Similarity=0.191  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEC
Q 026137           29 SAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVN  108 (243)
Q Consensus        29 ~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~  108 (243)
                      .+.+.+.+.|+.++.++.+  .+.+.+.|      +++..                    ...++..|..+|||||+.++
T Consensus        15 ~~~~~~~~~l~~~~~~~~i--~l~inspG------G~~~~--------------------~~~i~~~i~~~~~pvi~~v~   66 (160)
T cd07016          15 VTAKEFKDALDALGDDSDI--TVRINSPG------GDVFA--------------------GLAIYNALKRHKGKVTVKID   66 (160)
T ss_pred             cCHHHHHHHHHhccCCCCE--EEEEECCC------CCHHH--------------------HHHHHHHHHhcCCCEEEEEc
Confidence            5778888999988887443  45554444      33221                    23466677888999999999


Q ss_pred             CccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh----------------HHHHHHHhCC-HHHHHHHHhcCc
Q 026137          109 GHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC----------------AALFREKVGS-ATARRDVLLRAK  171 (243)
Q Consensus       109 G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g----------------~~~l~~~~g~-~~~a~~l~l~g~  171 (243)
                      |.|.|+|+.++++||.|+++++ ++|+++....+. .+...                ...+.++.|. .....+++..+.
T Consensus        67 g~a~s~g~~ia~a~d~~~~~~~-a~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~  144 (160)
T cd07016          67 GLAASAASVIAMAGDEVEMPPN-AMLMIHNPSTGA-AGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAET  144 (160)
T ss_pred             chHHhHHHHHHhcCCeEEECCC-cEEEEECCcccc-CcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCe
Confidence            9999999999999999999988 889987776555 33221                2236677774 256666666677


Q ss_pred             CCCHHHHHHcCchhhh
Q 026137          172 KIKGEEALRMGLVEAA  187 (243)
Q Consensus       172 ~~~a~eA~~~Glv~~v  187 (243)
                      .++++||+++||||+|
T Consensus       145 ~l~a~eA~~~GliD~v  160 (160)
T cd07016         145 WLTAQEAVELGFADEI  160 (160)
T ss_pred             ECcHHHHHHcCCCCcC
Confidence            8999999999999985

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=99.59  E-value=1.5e-14  Score=118.17  Aligned_cols=154  Identities=17%  Similarity=0.275  Sum_probs=106.2

Q ss_pred             EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHH
Q 026137           10 VFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSF   89 (243)
Q Consensus        10 v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~   89 (243)
                      |++|+++.+       ++ ....+|.++|+.+..|++++ +||++.    .|.|+++...                    
T Consensus         2 v~vi~i~g~-------i~-~s~~~l~~~l~~a~~d~~i~-~vvl~~----~s~Gg~~~~~--------------------   48 (207)
T TIGR00706         2 IAILPVSGA-------IA-VSPEDFDKKIKRIKDDKSIK-ALLLRI----NSPGGTVVAS--------------------   48 (207)
T ss_pred             EEEEEEEEE-------Ee-cCHHHHHHHHHHHhhCCCcc-EEEEEe----cCCCCCHHHH--------------------
Confidence            678888876       32 34678999999999999999 899976    4777766532                    


Q ss_pred             HHHHHHHhcCC--CcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccc------------cCCCC----------
Q 026137           90 RPLVAAMMDLP--MPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVD------------IGLTL----------  145 (243)
Q Consensus        90 ~~l~~~l~~~~--kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~------------~G~~~----------  145 (243)
                      .++...|..++  ||+|+.++|.|.|+|+.++++||.++++++ +.++...+.            +|+.+          
T Consensus        49 ~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~-a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~  127 (207)
T TIGR00706        49 EEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPG-TITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKD  127 (207)
T ss_pred             HHHHHHHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCC-CeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcC
Confidence            23344455555  999999999999999999999999999987 666543332            33310          


Q ss_pred             ---C-----hhhHHHHH-----------------HHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHH
Q 026137          146 ---P-----DYCAALFR-----------------EKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMR  200 (243)
Q Consensus       146 ---p-----~~g~~~l~-----------------~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~  200 (243)
                         |     .-.-..+.                 |.+. ....+ -+..|+.+++++|++.||||++... +++.+.+.+
T Consensus       128 ~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~-~~~~~-~~~~~~~~~~~~A~~~gLvD~i~~~-~~~~~~~~~  204 (207)
T TIGR00706       128 IGSPTRELTPEERDILQNLVNESYEQFVQVVAKGRNLP-VEDVK-KFADGRVFTGRQALKLRLVDKLGTE-DDALKWLAE  204 (207)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-HHHHH-HHhcCCcccHHHHHHcCCCcccCCH-HHHHHHHHH
Confidence               0     00001111                 2222 33323 3567899999999999999999876 555544433

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.51  E-value=4.1e-13  Score=106.87  Aligned_cols=152  Identities=24%  Similarity=0.318  Sum_probs=107.2

Q ss_pred             EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHH
Q 026137           10 VFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSF   89 (243)
Q Consensus        10 v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~   89 (243)
                      |.+|.++.+       +++.....+.++|+++++++ +. .|++.    .=|.|+++.                    ..
T Consensus         1 v~vi~i~g~-------I~~~~~~~l~~~l~~a~~~~-~~-~ivl~----inspGG~v~--------------------~~   47 (178)
T cd07021           1 VYVIPIEGE-------IDPGLAAFVERALKEAKEEG-AD-AVVLD----IDTPGGRVD--------------------SA   47 (178)
T ss_pred             CEEEEEeeE-------ECHHHHHHHHHHHHHHHhCC-CC-eEEEE----EECcCCCHH--------------------HH
Confidence            356777765       77888899999999999886 55 55553    334455433                    23


Q ss_pred             HHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChh-----hHH------HHHHHhC
Q 026137           90 RPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDY-----CAA------LFREKVG  158 (243)
Q Consensus        90 ~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~-----g~~------~l~~~~g  158 (243)
                      ..++..|..+|+|||+.|+|.|.|+|+.++++||+++++++ +.++.++.-.+. ..+.     -..      -+.++-|
T Consensus        48 ~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~-a~iG~~~~v~~~-~~~~~~~K~~~~~~~~~~~~A~~~g  125 (178)
T cd07021          48 LEIVDLILNSPIPTIAYVNDRAASAGALIALAADEIYMAPG-ATIGAAEPIPGD-GNGAADEKVQSYWRAKMRAAAEKKG  125 (178)
T ss_pred             HHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCC-CeEecCeeEcCC-CccchhHHHHHHHHHHHHHHHHHhC
Confidence            55667788899999999999999999999999999999988 889877554221 1100     000      1223334


Q ss_pred             -CHHHHHHHHhcC-------------cCCCHHHHHHcCchhhhcCChhHHHH
Q 026137          159 -SATARRDVLLRA-------------KKIKGEEALRMGLVEAAYDSEERVAE  196 (243)
Q Consensus       159 -~~~~a~~l~l~g-------------~~~~a~eA~~~Glv~~vv~~~~~l~~  196 (243)
                       ....+..|+-..             -.++++||++.|++|.+.++.++|+.
T Consensus       126 r~~~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~ll~  177 (178)
T cd07021         126 RDPDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELLV  177 (178)
T ss_pred             CCHHHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHHhh
Confidence             234455555444             26999999999999999998666653

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.43  E-value=1.6e-12  Score=107.35  Aligned_cols=145  Identities=16%  Similarity=0.204  Sum_probs=101.3

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026137           26 LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVA  105 (243)
Q Consensus        26 l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia  105 (243)
                      -+..++.++.++|+++..|++|+ +||++..+..| ++.+++++                    .+.+..+...+|||||
T Consensus        26 ~~~~~~~~l~~~l~~a~~d~~ik-~vvL~~~s~gg-~~~~~~el--------------------~~~i~~~~~~~kpVia   83 (222)
T cd07018          26 SSELSLRDLLEALEKAAEDDRIK-GIVLDLDGLSG-GLAKLEEL--------------------RQALERFRASGKPVIA   83 (222)
T ss_pred             cCCccHHHHHHHHHHHhcCCCeE-EEEEECCCCCC-CHHHHHHH--------------------HHHHHHHHHhCCeEEE
Confidence            34678899999999999999999 89999876555 54444433                    3444556667999999


Q ss_pred             EECCccchhHHHHHHhcCEEEEecCccceeccccc------------cCCCCC--------hhhHH------------HH
Q 026137          106 AVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVD------------IGLTLP--------DYCAA------------LF  153 (243)
Q Consensus       106 ~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~------------~G~~~p--------~~g~~------------~l  153 (243)
                      .++| |.++|+.++++||.+++.+. +.++...+.            +|+.+-        ..+..            .+
T Consensus        84 ~~~~-~~sggy~lasaad~I~a~p~-~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~  161 (222)
T cd07018          84 YADG-YSQGQYYLASAADEIYLNPS-GSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQT  161 (222)
T ss_pred             EeCC-CCchhhhhhhhCCEEEECCC-ceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHH
Confidence            9998 88999999999999999987 777764332            222100        00000            01


Q ss_pred             H-----------------HHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHH
Q 026137          154 R-----------------EKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEA  197 (243)
Q Consensus       154 ~-----------------~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~  197 (243)
                      .                 |.+. ....+ -+..|..+++++|++.||||++... +++.+.
T Consensus       162 ~~~l~~~~~~f~~~Va~~R~~~-~~~~~-~~~~~~~~~~~~A~~~GLvD~i~~~-~e~~~~  219 (222)
T cd07018         162 QALLDSLWDQYLADVAASRGLS-PDALE-ALIDLGGDSAEEALEAGLVDGLAYR-DELEAR  219 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCC-HHHHH-HHHHcCCcHHHHHHHCCCCCcCCcH-HHHHHH
Confidence            1                 1122 33333 3456999999999999999999976 555544

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.26  E-value=3e-10  Score=89.69  Aligned_cols=151  Identities=19%  Similarity=0.239  Sum_probs=108.1

Q ss_pred             EEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHH
Q 026137           11 FVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFR   90 (243)
Q Consensus        11 ~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~   90 (243)
                      .+|.++.+       +++.+...|.+.++.++++ ..+ .|++.    .=|.|+++..                    ..
T Consensus         2 ~vi~i~G~-------I~~~~~~~l~~~l~~A~~~-~~~-~i~l~----inSPGG~v~~--------------------~~   48 (172)
T cd07015           2 YVAQIKGQ-------ITSYTYDQFDRYITIAEQD-NAE-AIIIE----LDTPGGRADA--------------------AG   48 (172)
T ss_pred             EEEEEeeE-------ECHhHHHHHHHHHHHHhcC-CCC-eEEEE----EECCCCCHHH--------------------HH
Confidence            45666654       7788888999999999875 456 56663    3455554443                    23


Q ss_pred             HHHHHHhcCCCcEEEEEC---CccchhHHHHHHhcCEEEEecCccceeccccccCCCCC-------h-hh-HH------H
Q 026137           91 PLVAAMMDLPMPTVAAVN---GHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLP-------D-YC-AA------L  152 (243)
Q Consensus        91 ~l~~~l~~~~kp~Ia~v~---G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p-------~-~g-~~------~  152 (243)
                      .++..|...++||++.++   |.|.++|..++++||.+++.++ +.++....-.|. .+       + -- ..      -
T Consensus        49 ~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~-s~iG~~~pi~~~-g~~~~~~~~~~ki~~~~~~~~r~  126 (172)
T cd07015          49 NIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPG-TSIGACRPILGY-SQNGSIIEAPPKITNYFIAYIKS  126 (172)
T ss_pred             HHHHHHHhcCcCEEEEEecCCCeehhHHHHHHHhcCceEECCC-CEEEEccccccC-CCCCccccchHHHHHHHHHHHHH
Confidence            455667778999999999   9999999999999999999998 788866654332 12       0 00 11      1


Q ss_pred             HHHHhC-CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHH
Q 026137          153 FREKVG-SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAE  196 (243)
Q Consensus       153 l~~~~g-~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~  196 (243)
                      +.++-| ....+..++.....++++||+++|+||.++++.++|+.
T Consensus       127 ~A~~~Gr~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~~~~ll~  171 (172)
T cd07015         127 LAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELLK  171 (172)
T ss_pred             HHHHHCcCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCCHHHHhh
Confidence            223333 23456777778888999999999999999998776653

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=99.08  E-value=6.1e-11  Score=101.85  Aligned_cols=187  Identities=13%  Similarity=0.065  Sum_probs=150.9

Q ss_pred             CEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHHHHHHHHH
Q 026137            9 DVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARERVHYMFK   87 (243)
Q Consensus         9 ~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~   87 (243)
                      ++..++++ |   ..|..|.++..++...|++++.+..++ +..+|+.. +.|++|.|..+.....     ......++-
T Consensus        66 ~~~~~dmv-i---eav~edl~Lk~~l~~~le~v~~~~~i~-gsntSs~~~~~isa~ld~~e~vvg~-----h~fspa~~m  135 (380)
T KOG1683|consen   66 GFANADMV-I---EAVFEDLELKHELFKSLEKVEPPKCIR-GSNTSSLDINVISAGLDRPEMVVGM-----HFFSPAHWM  135 (380)
T ss_pred             ccccccee-c---cchhhhHHHHHHHHHHHHhhcCCccee-eeccccCChHHHhhccCchhhhccc-----cccCHHHHH
Confidence            77888888 6   689999999999999999999988888 78888876 9999999999886531     344556778


Q ss_pred             HHHHHHHHHhcCCCcEEEEECCccchhH--HHHHHhcCEEEEecCccce-eccccccCCCCChhhHHHHHHHhCCHHHHH
Q 026137           88 SFRPLVAAMMDLPMPTVAAVNGHAAAAG--FILALSHDYVVMRRDKGVL-YMSEVDIGLTLPDYCAALFREKVGSATARR  164 (243)
Q Consensus        88 ~~~~l~~~l~~~~kp~Ia~v~G~~~G~G--~~lal~~D~~ia~~~~a~f-~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~  164 (243)
                      .+++++....+++.|+.+++||.+--++  +-++-+|+|++..--..++ +..+..+++..|.+-...+...+| ...+-
T Consensus       136 ~LlEii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fG-f~~g~  214 (380)
T KOG1683|consen  136 QLLEIILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFG-FRVGE  214 (380)
T ss_pred             HHHHHHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcC-ccccH
Confidence            8999999999999999999999998887  8899999999986322233 677778885578887766666666 55555


Q ss_pred             HHHhcCcCCCHHHHHHcCchhhhcCC-hhHHHHHHHHHHHHHh
Q 026137          165 DVLLRAKKIKGEEALRMGLVEAAYDS-EERVAEASMRLGKQLA  206 (243)
Q Consensus       165 ~l~l~g~~~~a~eA~~~Glv~~vv~~-~~~l~~~a~~~a~~~~  206 (243)
                      .-+..+.-++..||++.|+++++.+. .+++.+....-.+...
T Consensus       215 ~~L~d~~gfdv~eal~~gl~~~~~~r~~eel~~~~~~g~kT~k  257 (380)
T KOG1683|consen  215 RALADGVGFDVAEALAVGLGDEIGPRIEEELLEKGRAGIKTGK  257 (380)
T ss_pred             HHHhhccCccHHHHHhhccchhccchhHHHHHHHHhhhhhccC
Confidence            56778899999999999999999995 5667666655544433

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.01  E-value=1.1e-08  Score=80.48  Aligned_cols=135  Identities=15%  Similarity=0.145  Sum_probs=88.9

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026137           26 LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVA  105 (243)
Q Consensus        26 l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia  105 (243)
                      ++..+.+++.+.|..++.++..+ .|++.    .=|.|+++..                    ...++..+..+++|+++
T Consensus         9 I~~~~~~~~~~~L~~l~~~~~~~-~i~l~----InSpGG~v~~--------------------~~~i~~~i~~~~~~v~~   63 (162)
T cd07013           9 VEDISANQFAAQLLFLGAVNPEK-DIYLY----INSPGGDVFA--------------------GMAIYDTIKFIKADVVT   63 (162)
T ss_pred             ECcHHHHHHHHHHHHHhcCCCCC-CEEEE----EECCCCcHHH--------------------HHHHHHHHHhcCCCceE
Confidence            67789999999999999886665 34442    2344444322                    23456667778899999


Q ss_pred             EECCccchhHHHHHHhcC--EEEEecCccceeccccccCCCCChhh-HH---------------HHHHHhCC-HHHHHHH
Q 026137          106 AVNGHAAAAGFILALSHD--YVVMRRDKGVLYMSEVDIGLTLPDYC-AA---------------LFREKVGS-ATARRDV  166 (243)
Q Consensus       106 ~v~G~~~G~G~~lal~~D--~~ia~~~~a~f~~p~~~~G~~~p~~g-~~---------------~l~~~~g~-~~~a~~l  166 (243)
                      .+.|.|.++|.-+++++|  .|++.++ +.+.+....-+. ..... ..               .+.++-|. .....++
T Consensus        64 ~~~g~aaS~~~~i~~a~~~g~r~~~p~-a~~~ih~~~~~~-~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~  141 (162)
T cd07013          64 IIDGLAASMGSVIAMAGAKGKRFILPN-AMMMIHQPWGGT-LGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHAD  141 (162)
T ss_pred             EEEeehhhHHHHHHHcCCCCcEEEecC-EEEEEccCcccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            999999999999999999  6888787 667653322222 11110 11               11122231 3344455


Q ss_pred             HhcCcCCCHHHHHHcCchhhh
Q 026137          167 LLRAKKIKGEEALRMGLVEAA  187 (243)
Q Consensus       167 ~l~g~~~~a~eA~~~Glv~~v  187 (243)
                      +-.+.-++|+||+++||||++
T Consensus       142 ~~~~~~~sa~eA~~~GliD~i  162 (162)
T cd07013         142 LERDTWLSAREAVEYGFADTI  162 (162)
T ss_pred             HcCCccccHHHHHHcCCCCcC
Confidence            555556799999999999975

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>PRK10949 protease 4; Provisional

Probab=98.99  E-value=7.8e-09  Score=96.72  Aligned_cols=169  Identities=19%  Similarity=0.232  Sum_probs=107.1

Q ss_pred             eCCEEEEEEcCCCCC---CCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHH
Q 026137            7 HGDVFVLTLTGSSNV---DEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVH   83 (243)
Q Consensus         7 ~~~v~~i~ln~p~~~---~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~   83 (243)
                      ++.|++|+++.+=..   ..+.++   -+.+.+.|+++..|++++ +||++-    =|.|+....               
T Consensus       325 ~~~Iavi~~~G~I~~g~~~~g~~~---~~~~~~~l~~a~~D~~vk-aVvLrI----nSpGGs~~a---------------  381 (618)
T PRK10949        325 GGSIAVIFANGAIMDGEETPGNVG---GDTTAAQIRDARLDPKVK-AIVLRV----NSPGGSVTA---------------  381 (618)
T ss_pred             CCeEEEEEEEEEEcCCCCcCCCcC---HHHHHHHHHHHHhCCCCc-EEEEEe----cCCCCcHHH---------------
Confidence            568899987643100   112233   357888999999999999 788864    344442221               


Q ss_pred             HHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceecccc------------ccCCCCC-----
Q 026137           84 YMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEV------------DIGLTLP-----  146 (243)
Q Consensus        84 ~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~------------~~G~~~p-----  146 (243)
                        .+.+.+.+.++....||||+.+.|.|..||+-++++||.++|.+. +..+...+            ++|+..-     
T Consensus       382 --se~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~-t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~  458 (618)
T PRK10949        382 --SEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPS-TLTGSIGIFGVINTVENSLDSIGVHTDGVSTS  458 (618)
T ss_pred             --HHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCC-CceeeCcEEEEccCHHHHHHhcCCceeEEecc
Confidence              123444555566678999999999999999999999999999885 33332111            2343210     


Q ss_pred             ------------hhhHHHHH-----------------HHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHH
Q 026137          147 ------------DYCAALFR-----------------EKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEA  197 (243)
Q Consensus       147 ------------~~g~~~l~-----------------~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~  197 (243)
                                  .-.-..+.                 |.+. .... +-+..|+.|++++|++.||||++-.- ++..  
T Consensus       459 ~~~~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~-~~~v-~~ia~Grv~tg~~A~~~GLVD~lG~~-~~ai--  533 (618)
T PRK10949        459 PLADVSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKT-PEQI-DKIAQGHVWTGQDAKANGLVDSLGDF-DDAV--  533 (618)
T ss_pred             ccCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-HHHH-HHHhcCCcccHHHHHHcCCCccCCCH-HHHH--
Confidence                        00000111                 2233 3333 34678999999999999999999765 4444  


Q ss_pred             HHHHHHHHhcC
Q 026137          198 SMRLGKQLAGR  208 (243)
Q Consensus       198 a~~~a~~~~~~  208 (243)
                        +.|+++++.
T Consensus       534 --~~a~~~a~~  542 (618)
T PRK10949        534 --AKAAELAKL  542 (618)
T ss_pred             --HHHHHHcCC
Confidence              444444543

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.94  E-value=3.4e-08  Score=80.61  Aligned_cols=142  Identities=15%  Similarity=0.153  Sum_probs=97.4

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCCCE-EEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137           26 LGPSAIDSILSAIAQAKAEATPGS-AFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV  104 (243)
Q Consensus        26 l~~~~~~~l~~~l~~~~~~~~~~~-~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I  104 (243)
                      ++..+..++...|..++..+..+. .|.|.      |.|+++..                    ...++..|..++.|++
T Consensus        44 I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN------SpGG~v~~--------------------g~~I~d~i~~~~~~v~   97 (207)
T PRK12553         44 VDDASANDVMAQLLVLESIDPDRDITLYIN------SPGGSVTA--------------------GDAIYDTIQFIRPDVQ   97 (207)
T ss_pred             ECHHHHHHHHHHHHHHHhCCCCCCEEEEEe------CCCCcHHH--------------------HHHHHHHHHhcCCCcE
Confidence            788999999999999997543331 34443      34444332                    2345666777888999


Q ss_pred             EEECCccchhHHHHHHhcC--EEEEecCccceecccccc-CCCCChh-h---------------HHHHHHHhCC-HHHHH
Q 026137          105 AAVNGHAAAAGFILALSHD--YVVMRRDKGVLYMSEVDI-GLTLPDY-C---------------AALFREKVGS-ATARR  164 (243)
Q Consensus       105 a~v~G~~~G~G~~lal~~D--~~ia~~~~a~f~~p~~~~-G~~~p~~-g---------------~~~l~~~~g~-~~~a~  164 (243)
                      +.+.|.|.+.|..++++||  .|++.++ +.|.+..... |...... -               ...+.++-|. .....
T Consensus        98 t~~~G~aaSaa~lI~~ag~~~~R~~~p~-s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~  176 (207)
T PRK12553         98 TVCTGQAASAGAVLLAAGTPGKRFALPN-ARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIR  176 (207)
T ss_pred             EEEEeehhhHHHHHHHcCCcCcEEECCC-chhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            9999999999999999999  5899887 7777655432 2100000 0               1123334441 34555


Q ss_pred             HHHhcCcCCCHHHHHHcCchhhhcCChhHH
Q 026137          165 DVLLRAKKIKGEEALRMGLVEAAYDSEERV  194 (243)
Q Consensus       165 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l  194 (243)
                      +++-.+..++|+||+++||||+|+++.++|
T Consensus       177 ~~~~~~~~lta~EA~e~GliD~I~~~~~dl  206 (207)
T PRK12553        177 KDTDRDKWLTAEEAKDYGLVDQIITSYRDL  206 (207)
T ss_pred             HHHhcCccccHHHHHHcCCccEEcCchhhc
Confidence            666678889999999999999999875443

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.93  E-value=1.2e-08  Score=82.87  Aligned_cols=138  Identities=16%  Similarity=0.126  Sum_probs=88.0

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCCCE-EEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137           26 LGPSAIDSILSAIAQAKAEATPGS-AFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV  104 (243)
Q Consensus        26 l~~~~~~~l~~~l~~~~~~~~~~~-~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I  104 (243)
                      ++..+.+.+...|..++.++..+. .+.|.+      .|+++..                    ...++..|...+.|++
T Consensus        40 I~~~~~~~i~~~L~~l~~~~~~~~I~l~InS------pGG~v~~--------------------g~~I~d~i~~~~~~v~   93 (200)
T PRK00277         40 VEDHMANLIVAQLLFLEAEDPDKDIYLYINS------PGGSVTA--------------------GLAIYDTMQFIKPDVS   93 (200)
T ss_pred             ECHHHHHHHHHHHHHhhccCCCCCEEEEEEC------CCCcHHH--------------------HHHHHHHHHhcCCCEE
Confidence            788899999999998886543331 344433      3333322                    2334556677788999


Q ss_pred             EEECCccchhHHHHHHhcC--EEEEecCccceeccccccCCC--CChhh--H-----------HHHHHHhC-CHHHHHHH
Q 026137          105 AAVNGHAAAAGFILALSHD--YVVMRRDKGVLYMSEVDIGLT--LPDYC--A-----------ALFREKVG-SATARRDV  166 (243)
Q Consensus       105 a~v~G~~~G~G~~lal~~D--~~ia~~~~a~f~~p~~~~G~~--~p~~g--~-----------~~l~~~~g-~~~~a~~l  166 (243)
                      +.+.|.|.+.|..++++++  .|++.++ +++.+....-|..  .-+.-  +           ..+..+-| ......++
T Consensus        94 t~~~G~aaS~a~~I~~ag~~~~r~~~p~-s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~  172 (200)
T PRK00277         94 TICIGQAASMGAFLLAAGAKGKRFALPN-SRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKD  172 (200)
T ss_pred             EEEEeEeccHHHHHHhcCCCCCEEEcCC-ceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            9999999999999998753  5777766 5565433321210  00000  0           11233334 13444555


Q ss_pred             HhcCcCCCHHHHHHcCchhhhcCC
Q 026137          167 LLRAKKIKGEEALRMGLVEAAYDS  190 (243)
Q Consensus       167 ~l~g~~~~a~eA~~~Glv~~vv~~  190 (243)
                      +-.+.-++|+||+++||||+|+++
T Consensus       173 ~~~~~~lsa~EA~e~GliD~Ii~~  196 (200)
T PRK00277        173 TDRDNFMSAEEAKEYGLIDEVLTK  196 (200)
T ss_pred             hhCCccccHHHHHHcCCccEEeec
Confidence            566778999999999999999976

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=98.87  E-value=1.3e-07  Score=76.58  Aligned_cols=143  Identities=12%  Similarity=0.053  Sum_probs=93.4

Q ss_pred             CCHHHHHHHHHHHHHHHh-cCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137           26 LGPSAIDSILSAIAQAKA-EATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV  104 (243)
Q Consensus        26 l~~~~~~~l~~~l~~~~~-~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I  104 (243)
                      ++..+...+...|..++. ++.-...+.|.      |.|+++..                    ...++..|..++.||+
T Consensus        32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN------SpGG~v~a--------------------g~aI~d~i~~~~~~V~   85 (197)
T PRK14512         32 INKDLSELFQEKILLLEALDSKKPIFVYID------SEGGDIDA--------------------GFAIFNMIRFVKPKVF   85 (197)
T ss_pred             EcHHHHHHHHHHHHHHHhcCCCCCEEEEEE------CCCCCHHH--------------------HHHHHHHHHhCCCCEE
Confidence            778899999999988886 32211134443      44444332                    2345666777899999


Q ss_pred             EEECCccchhHHHHHHhcCE--EEEecCccceeccccccCCCCChhh-HH---------------HHHHHhC-CHHHHHH
Q 026137          105 AAVNGHAAAAGFILALSHDY--VVMRRDKGVLYMSEVDIGLTLPDYC-AA---------------LFREKVG-SATARRD  165 (243)
Q Consensus       105 a~v~G~~~G~G~~lal~~D~--~ia~~~~a~f~~p~~~~G~~~p~~g-~~---------------~l~~~~g-~~~~a~~  165 (243)
                      +.+.|.|.+.|.-++++||-  |++.++ +++......-++ ..... ..               .+..+-| ......+
T Consensus        86 t~v~G~AaSaaslIl~ag~~~~R~~~p~-s~imiHqP~~~~-~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~  163 (197)
T PRK14512         86 TIGVGLVASAAALIFLAAKKESRFSLPN-ARYLLHQPLSGF-KGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEK  163 (197)
T ss_pred             EEEEeeeHhHHHHHHhcCCcCceeECCC-CcEEEEcCcccc-ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence            99999999999999999985  898887 666543332222 11111 00               1122233 1233445


Q ss_pred             HHhcCcCCCHHHHHHcCchhhhcCChhHHHH
Q 026137          166 VLLRAKKIKGEEALRMGLVEAAYDSEERVAE  196 (243)
Q Consensus       166 l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~  196 (243)
                      ++-....++|+||+++||||+|+++.+++..
T Consensus       164 ~~~~d~~lta~EA~~yGliD~I~~~~~~l~~  194 (197)
T PRK14512        164 DTDRDFWLDSSSAVKYGLVFEVVETRLELEE  194 (197)
T ss_pred             hhhcCcccCHHHHHHcCCccEeecCcHHhHh
Confidence            5555667999999999999999988565544

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.84  E-value=8.4e-08  Score=76.06  Aligned_cols=142  Identities=15%  Similarity=0.142  Sum_probs=97.1

Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCE-EEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHH
Q 026137           12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGS-AFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFR   90 (243)
Q Consensus        12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~-~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~   90 (243)
                      .|.++.|       ++.....++...+..++.++..+. .+.|.      |.|+|+..                    ..
T Consensus        11 ~i~i~g~-------I~~~~~~~i~~~l~~~~~~~~~~~i~l~in------SpGG~v~~--------------------~~   57 (171)
T cd07017          11 IIFLGGP-------IDDEVANLIIAQLLYLESEDPKKPIYLYIN------SPGGSVTA--------------------GL   57 (171)
T ss_pred             EEEEcCE-------EcHHHHHHHHHHHHHHHccCCCCceEEEEE------CCCCCHHH--------------------HH
Confidence            4566665       788899999999999998755441 33343      33444332                    12


Q ss_pred             HHHHHHhcCCCcEEEEECCccchhHHHHHHhcC--EEEEecCccceeccccccCCCCCh--hh-------------HHHH
Q 026137           91 PLVAAMMDLPMPTVAAVNGHAAAAGFILALSHD--YVVMRRDKGVLYMSEVDIGLTLPD--YC-------------AALF  153 (243)
Q Consensus        91 ~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D--~~ia~~~~a~f~~p~~~~G~~~p~--~g-------------~~~l  153 (243)
                      .++..|..++.|+++.+.|.|.++|..+++++|  .|++.++ ++|.+.+...+...+.  .-             ...+
T Consensus        58 ~i~~~l~~~~~~v~t~~~g~aaS~~~~i~~~g~~~~r~~~~~-a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~  136 (171)
T cd07017          58 AIYDTMQYIKPPVSTICLGLAASMGALLLAAGTKGKRYALPN-SRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEIL  136 (171)
T ss_pred             HHHHHHHhcCCCEEEEEEeEehhHHHHHHHcCCCCCEEEccc-hHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556667899999999999999999999999  8999988 7887766655542110  00             0112


Q ss_pred             HHHhCC-HHHHHHHHhcCcCCCHHHHHHcCchhhh
Q 026137          154 REKVGS-ATARRDVLLRAKKIKGEEALRMGLVEAA  187 (243)
Q Consensus       154 ~~~~g~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v  187 (243)
                      .++.|. .....+++-.+.-++++||+++||||+|
T Consensus       137 ~~~tg~~~~~i~~~~~~~~~lta~EA~e~GiiD~V  171 (171)
T cd07017         137 AKHTGQPLEKIEKDTDRDRYMSAEEAKEYGLIDKI  171 (171)
T ss_pred             HHHhCCCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence            233341 2344556667788999999999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>PRK11778 putative inner membrane peptidase; Provisional

Probab=98.82  E-value=8.1e-08  Score=83.09  Aligned_cols=163  Identities=20%  Similarity=0.193  Sum_probs=95.5

Q ss_pred             eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHH
Q 026137            7 HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMF   86 (243)
Q Consensus         7 ~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~   86 (243)
                      .+.|++|.++.+=   ...-...+-+++...++.+..+   . .||++-    =|.|+.+....                
T Consensus        89 ~~~v~VI~~~G~I---~~~~~~~l~e~i~a~l~~A~~~---~-aVvLri----dSpGG~v~~s~----------------  141 (330)
T PRK11778         89 KPRLFVLDFKGDI---DASEVESLREEITAILAVAKPG---D-EVLLRL----ESPGGVVHGYG----------------  141 (330)
T ss_pred             CCeEEEEEEEEEE---CCCcchhhHHHHHHHHHhccCC---C-eEEEEE----eCCCCchhHHH----------------
Confidence            4689999999762   1112223445555555544433   3 466642    33444332211                


Q ss_pred             HHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccc------------cCCC----------
Q 026137           87 KSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVD------------IGLT----------  144 (243)
Q Consensus        87 ~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~------------~G~~----------  144 (243)
                       .....+.++....||+|+.+++.|..||+.++++||.+++.+. +..+...+-            +|+.          
T Consensus       142 -~a~~~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~-a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK  219 (330)
T PRK11778        142 -LAASQLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPF-AIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYK  219 (330)
T ss_pred             -HHHHHHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCC-CeEEeeeeeeeccCHHHHHHHCCCceEEEEecCcc
Confidence             0111144566788999999999999999999999999999886 555543331            2221          


Q ss_pred             ---CC-----hhhHHHHH-----------HHhC--CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHH
Q 026137          145 ---LP-----DYCAALFR-----------EKVG--SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASM  199 (243)
Q Consensus       145 ---~p-----~~g~~~l~-----------~~~g--~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~  199 (243)
                         -|     .-+-..+.           ..+-  .+....+-+.+|+.+++++|++.||||++... +++...+.
T Consensus       220 ~a~~pf~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~-dd~i~~~~  294 (330)
T PRK11778        220 RTLTLFGENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTS-DDYLLELM  294 (330)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCH-HHHHHHHH
Confidence               00     00000111           1111  00111345678999999999999999999987 65544433

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=98.79  E-value=8.2e-07  Score=74.50  Aligned_cols=138  Identities=20%  Similarity=0.251  Sum_probs=93.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026137           24 HRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPT  103 (243)
Q Consensus        24 N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~  103 (243)
                      -+++++-+....+.++.+.+..-+  +|-+--+++++. |.+-++              .-..+.+.+.+..+...++|+
T Consensus        77 G~~~~~g~rKa~R~~~lA~~~~lP--vV~lvDtpGa~~-g~~aE~--------------~G~~~~ia~~~~~~s~~~VP~  139 (256)
T PRK12319         77 GQPHPEGYRKALRLMKQAEKFGRP--VVTFINTAGAYP-GVGAEE--------------RGQGEAIARNLMEMSDLKVPI  139 (256)
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCC--EEEEEECCCcCC-CHhHHh--------------ccHHHHHHHHHHHHhCCCCCE
Confidence            358899999999999988876554  333333333332 332221              112345667777888999999


Q ss_pred             EEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCc
Q 026137          104 VAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGL  183 (243)
Q Consensus       104 Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Gl  183 (243)
                      |++|-|.|.|||......||++++.++ +.++       +..|.+.+..+-+.-.....+.+.+    .+++.++++.|+
T Consensus       140 IsVI~G~~~gGgA~a~~~~D~v~m~~~-a~~~-------v~~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~  207 (256)
T PRK12319        140 IAIIIGEGGSGGALALAVADQVWMLEN-TMYA-------VLSPEGFASILWKDGSRATEAAELM----KITAGELLEMGV  207 (256)
T ss_pred             EEEEeCCcCcHHHHHhhcCCEEEEecC-ceEE-------EcCHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCC
Confidence            999999999998888889999999998 6554       2235454444433222122223322    679999999999


Q ss_pred             hhhhcCC
Q 026137          184 VEAAYDS  190 (243)
Q Consensus       184 v~~vv~~  190 (243)
                      ||+|++.
T Consensus       208 iD~ii~e  214 (256)
T PRK12319        208 VDKVIPE  214 (256)
T ss_pred             CcEecCC
Confidence            9999975

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.72  E-value=1.3e-07  Score=82.18  Aligned_cols=163  Identities=21%  Similarity=0.264  Sum_probs=101.5

Q ss_pred             CEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHH
Q 026137            9 DVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKS   88 (243)
Q Consensus         9 ~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~   88 (243)
                      .|+.|.++.+=.-..+.+..-..+...+.|+.+..++.++ .|+|.    .=|.|+..-.                 .+.
T Consensus        60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk-~vvL~----inSPGG~v~a-----------------s~~  117 (317)
T COG0616          60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVK-AVVLR----INSPGGSVVA-----------------SEL  117 (317)
T ss_pred             EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCc-eEEEE----EECcCCchhH-----------------HHH
Confidence            5788877755200011111224677888889999999999 56663    3444553322                 123


Q ss_pred             HHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhC----------
Q 026137           89 FRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVG----------  158 (243)
Q Consensus        89 ~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g----------  158 (243)
                      +.+.++++..-. ||++.|++.|..||+-++++||.+||++. +..|--.+..+.  |..  ..+..+.|          
T Consensus       118 i~~~l~~l~~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~-si~GSIGVi~~~--~~~--~~l~~k~Gv~~~~~~ag~  191 (317)
T COG0616         118 IARALKRLRAKK-PVVVSVGGYAASGGYYIALAADKIVADPS-SITGSIGVISGA--PNF--EELLEKLGVEKEVITAGE  191 (317)
T ss_pred             HHHHHHHHhhcC-CEEEEECCeecchhhhhhccCCEEEecCC-ceeeeceeEEec--CCH--HHHHHhcCCceeeeeccc
Confidence            344455555555 99999999999999999999999999987 655533332221  111  11111111          


Q ss_pred             ---------------------------------------CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHH
Q 026137          159 ---------------------------------------SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASM  199 (243)
Q Consensus       159 ---------------------------------------~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~  199 (243)
                                                             .......-+.+|+.+++++|++.||||++-.. ++....+.
T Consensus       192 ~k~~~~~~~~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~-~~av~~~~  270 (317)
T COG0616         192 YKDILSPFRPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGL-DDAVKDAA  270 (317)
T ss_pred             cccccCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCH-HHHHHHHH
Confidence                                                   01112446788999999999999999999876 43433333


Q ss_pred             H
Q 026137          200 R  200 (243)
Q Consensus       200 ~  200 (243)
                      +
T Consensus       271 ~  271 (317)
T COG0616         271 E  271 (317)
T ss_pred             H
Confidence            3

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.71  E-value=8.4e-08  Score=76.79  Aligned_cols=143  Identities=18%  Similarity=0.274  Sum_probs=96.4

Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCE-EEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHH
Q 026137           12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGS-AFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFR   90 (243)
Q Consensus        12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~-~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~   90 (243)
                      +|.|+.|       +|.++...+.+.|..++.++..+- .|.|.      |.|+|+..                    ..
T Consensus        18 ~i~l~g~-------I~~~~~~~~~~~L~~l~~~~~~~~i~i~IN------SpGG~v~~--------------------g~   64 (182)
T PF00574_consen   18 IIFLNGP-------IDEESANRLISQLLYLENEDKNKPINIYIN------SPGGDVDA--------------------GL   64 (182)
T ss_dssp             EEEEESS-------BSHHHHHHHHHHHHHHHHHTSSSEEEEEEE------ECEBCHHH--------------------HH
T ss_pred             EEEECCc-------cCHHHHHHHHHHHHHHhccCCCceEEEEEc------CCCCccHH--------------------HH
Confidence            4567776       899999999999888854433221 24443      45555443                    24


Q ss_pred             HHHHHHhcCCCcEEEEECCccchhHHHHHHhcCE--EEEecCccceeccccccCCCCChhhHH-----------------
Q 026137           91 PLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDY--VVMRRDKGVLYMSEVDIGLTLPDYCAA-----------------  151 (243)
Q Consensus        91 ~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~--~ia~~~~a~f~~p~~~~G~~~p~~g~~-----------------  151 (243)
                      .++..|..++.|+++.+.|.|.+.|.-++++||.  |++.++ +.|.+.+...+.  ++....                 
T Consensus        65 ~i~~~i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~-s~~m~H~p~~~~--~g~~~~l~~~~~~l~~~~~~~~~  141 (182)
T PF00574_consen   65 AIYDAIRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPN-SRFMIHQPSTGS--GGNASELREQAKELEKLNERIAN  141 (182)
T ss_dssp             HHHHHHHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT--EEEES-CEEEE--EEEHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCeEEEEeCccccceehhhhcCCcCceeeeec-CEEEeecceeec--ccccchhHHHHHHHHHHHHHHHH
Confidence            4666778889999999999999999999999999  899998 888877776554  221111                 


Q ss_pred             HHHHHhCC-HHHHHHHHhcCcCCCHHHHHHcCchhhhcCC
Q 026137          152 LFREKVGS-ATARRDVLLRAKKIKGEEALRMGLVEAAYDS  190 (243)
Q Consensus       152 ~l~~~~g~-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  190 (243)
                      .+..+.|. .....+++-...-++++||+++||||+|+.+
T Consensus       142 ~~~~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~  181 (182)
T PF00574_consen  142 IYAERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIES  181 (182)
T ss_dssp             HHHHHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred             HHHHHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence            11123331 2333444444555899999999999999864

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=98.60  E-value=5.9e-06  Score=71.09  Aligned_cols=137  Identities=16%  Similarity=0.219  Sum_probs=93.4

Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137           25 RLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV  104 (243)
Q Consensus        25 ~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I  104 (243)
                      .++++-+....+.++.+++..-+- +-++-+ +++++ |.+-++.              -..+.+.+.+..+.....|+|
T Consensus       134 ~~~p~g~rKa~Rlm~lA~~f~lPI-ItlvDT-pGA~~-G~~AE~~--------------G~~~aiar~l~~~a~~~VP~I  196 (322)
T CHL00198        134 MPSPGGYRKALRLMKHANKFGLPI-LTFIDT-PGAWA-GVKAEKL--------------GQGEAIAVNLREMFSFEVPII  196 (322)
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCCE-EEEEeC-CCcCc-CHHHHHH--------------hHHHHHHHHHHHHHcCCCCEE
Confidence            588999999999999998765543 333333 33333 3322211              123445666677788999999


Q ss_pred             EEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCch
Q 026137          105 AAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLV  184 (243)
Q Consensus       105 a~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv  184 (243)
                      ++|-|.|.|||......||++++.++ ++++       +..|-+.+..+-+.   ..++.+ ....-.++|+++++.|+|
T Consensus       197 sVViGeggsGGAlal~~aD~V~m~e~-a~~s-------VisPEg~a~Il~~d---~~~a~~-aA~~~~ita~dL~~~gii  264 (322)
T CHL00198        197 CTIIGEGGSGGALGIGIGDSIMMLEY-AVYT-------VATPEACAAILWKD---SKKSLD-AAEALKITSEDLKVLGII  264 (322)
T ss_pred             EEEeCcccHHHHHhhhcCCeEEEeCC-eEEE-------ecCHHHHHHHHhcc---hhhHHH-HHHHcCCCHHHHHhCCCC
Confidence            99999998888765566999999998 6664       22455555554433   223333 334567999999999999


Q ss_pred             hhhcCC
Q 026137          185 EAAYDS  190 (243)
Q Consensus       185 ~~vv~~  190 (243)
                      |+|+|.
T Consensus       265 D~ii~E  270 (322)
T CHL00198        265 DEIIPE  270 (322)
T ss_pred             eEeccC
Confidence            999975

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=98.59  E-value=1.5e-05  Score=68.73  Aligned_cols=137  Identities=15%  Similarity=0.217  Sum_probs=93.7

Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137           25 RLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV  104 (243)
Q Consensus        25 ~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I  104 (243)
                      +++++-+....+.++.+++-.-+  +|-+--++++++ |.+-++              .-..+.+.+.+..+....+|+|
T Consensus       131 ~~~peg~rKa~R~m~lA~~f~lP--IVtlvDTpGa~~-G~~aE~--------------~G~~~aia~~l~~~a~~~VP~I  193 (319)
T PRK05724        131 MPRPEGYRKALRLMKMAEKFGLP--IITFIDTPGAYP-GIGAEE--------------RGQSEAIARNLREMARLKVPII  193 (319)
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCC--EEEEEeCCCCCC-CHHHHh--------------ccHHHHHHHHHHHHhCCCCCEE
Confidence            57899999999999988876544  344433333333 432221              1123456677788889999999


Q ss_pred             EEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCch
Q 026137          105 AAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLV  184 (243)
Q Consensus       105 a~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv  184 (243)
                      ++|-|.|.|||......||++++.++ +.++       +..|.+.+..+-+.-   .++.+..- ...+++.++++.|+|
T Consensus       194 sVIiGeg~sGGAla~~~aD~v~m~~~-A~~s-------visPEg~a~Il~~~~---~~a~~aae-~~~ita~~l~~~g~i  261 (319)
T PRK05724        194 CTVIGEGGSGGALAIGVGDRVLMLEY-STYS-------VISPEGCASILWKDA---SKAPEAAE-AMKITAQDLKELGII  261 (319)
T ss_pred             EEEeCCccHHHHHHHhccCeeeeecC-ceEe-------ecCHHHHHHHHhcCc---hhHHHHHH-HcCCCHHHHHHCCCc
Confidence            99999998888766667999999988 6654       324555555544432   22333222 556899999999999


Q ss_pred             hhhcCC
Q 026137          185 EAAYDS  190 (243)
Q Consensus       185 ~~vv~~  190 (243)
                      |+|++.
T Consensus       262 D~II~E  267 (319)
T PRK05724        262 DEIIPE  267 (319)
T ss_pred             eEeccC
Confidence            999975

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=98.57  E-value=2.9e-06  Score=68.80  Aligned_cols=138  Identities=9%  Similarity=0.041  Sum_probs=92.5

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCCC-EEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137           26 LGPSAIDSILSAIAQAKAEATPG-SAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV  104 (243)
Q Consensus        26 l~~~~~~~l~~~l~~~~~~~~~~-~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I  104 (243)
                      +|.++.+++...|-.++.++..+ ..+.|.+.      |+++..                    ...++..+...+.||.
T Consensus        39 i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSp------GG~v~~--------------------g~aIyd~m~~~~~~V~   92 (200)
T CHL00028         39 VDDEIANQLIGLMVYLSIEDDTKDLYLFINSP------GGSVIS--------------------GLAIYDTMQFVKPDVH   92 (200)
T ss_pred             ecHHHHHHHHHHHHHHhccCCCCCEEEEEeCC------Ccchhh--------------------HHHHHHHHHhcCCCEE
Confidence            89999999999999988543222 13445443      343321                    2346667788999999


Q ss_pred             EEECCccchhHHHHHHhcC--EEEEecCccceeccccccCCCCChhh-H---------------HHHHHHhCC-HHHHHH
Q 026137          105 AAVNGHAAAAGFILALSHD--YVVMRRDKGVLYMSEVDIGLTLPDYC-A---------------ALFREKVGS-ATARRD  165 (243)
Q Consensus       105 a~v~G~~~G~G~~lal~~D--~~ia~~~~a~f~~p~~~~G~~~p~~g-~---------------~~l~~~~g~-~~~a~~  165 (243)
                      ..+-|.|.+.|.-+++++|  .|++.++ ++|.+.....|....... .               ..+..+-|. .....+
T Consensus        93 Tv~~G~AaS~aslIl~aG~kg~R~~~p~-s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~  171 (200)
T CHL00028         93 TICLGLAASMASFILAGGEITKRLAFPH-ARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISE  171 (200)
T ss_pred             EEEEEehHHHHHHHHhCCCCCCEEecCC-CeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            9999999999999999999  6999988 777765554441111110 0               111223331 223344


Q ss_pred             HHhcCcCCCHHHHHHcCchhhhcCC
Q 026137          166 VLLRAKKIKGEEALRMGLVEAAYDS  190 (243)
Q Consensus       166 l~l~g~~~~a~eA~~~Glv~~vv~~  190 (243)
                      ++-...-++|+||+++||||+|+++
T Consensus       172 ~~~r~~~lta~EA~eyGliD~I~~~  196 (200)
T CHL00028        172 DMERDVFMSATEAKAYGIVDLVAVN  196 (200)
T ss_pred             HhhcCccCCHHHHHHcCCCcEEeec
Confidence            4555566999999999999999976

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=98.57  E-value=2e-06  Score=69.35  Aligned_cols=144  Identities=17%  Similarity=0.149  Sum_probs=92.3

Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCE-EEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHH
Q 026137           12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGS-AFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFR   90 (243)
Q Consensus        12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~-~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~   90 (243)
                      +|.++.|       ++..+.+++...|..++.++..+. .+.|.      |.|+|+..                    ..
T Consensus        28 iI~l~g~-------I~~~~~~~ii~~L~~l~~~~~~~~i~l~In------SpGG~v~~--------------------g~   74 (191)
T TIGR00493        28 IIFLSGE-------VNDSVANLIVAQLLFLEAEDPEKDIYLYIN------SPGGSITA--------------------GL   74 (191)
T ss_pred             EEEEccE-------EChHHHHHHHHHHHHhhccCCCCCEEEEEE------CCCCCHHH--------------------HH
Confidence            3455655       778888999999988887554331 23333      33444432                    23


Q ss_pred             HHHHHHhcCCCcEEEEECCccchhHHHHHHhcC--EEEEecCccceeccccccCCC--CChhh--H-----------HHH
Q 026137           91 PLVAAMMDLPMPTVAAVNGHAAAAGFILALSHD--YVVMRRDKGVLYMSEVDIGLT--LPDYC--A-----------ALF  153 (243)
Q Consensus        91 ~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D--~~ia~~~~a~f~~p~~~~G~~--~p~~g--~-----------~~l  153 (243)
                      .++..+..++.|+...+.|.|.+.|.-+++++|  .|++.++ ++|.+.+..-|..  ..+..  +           ..+
T Consensus        75 ~I~d~l~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~-s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~y  153 (191)
T TIGR00493        75 AIYDTMQFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPN-SRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDIL  153 (191)
T ss_pred             HHHHHHHhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCC-ceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHH
Confidence            344556666777877788999999998888765  6999988 7787654432220  11111  0           112


Q ss_pred             HHHhCC-HHHHHHHHhcCcCCCHHHHHHcCchhhhcC
Q 026137          154 REKVGS-ATARRDVLLRAKKIKGEEALRMGLVEAAYD  189 (243)
Q Consensus       154 ~~~~g~-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~  189 (243)
                      .++-|. .....+++-.+.-++|+||+++||||+|+.
T Consensus       154 a~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii~  190 (191)
T TIGR00493       154 ANHTGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVLT  190 (191)
T ss_pred             HHHHCcCHHHHHHHhhCCccCcHHHHHHcCCccEEec
Confidence            334441 344556666677799999999999999875

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=98.56  E-value=1.1e-05  Score=71.19  Aligned_cols=137  Identities=18%  Similarity=0.269  Sum_probs=90.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026137           24 HRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPT  103 (243)
Q Consensus        24 N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~  103 (243)
                      .+++++-+....+.++.++...-+- +-++-. ++++ .|.+.++              .-....+.+.+..+....+|+
T Consensus       200 G~~~peGyRKAlR~mklAekf~lPI-VtLVDT-pGA~-pG~~AEe--------------~Gqa~aIAr~l~ams~l~VPi  262 (431)
T PLN03230        200 AMPQPNGYRKALRFMRHAEKFGFPI-LTFVDT-PGAY-AGIKAEE--------------LGQGEAIAFNLREMFGLRVPI  262 (431)
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCCE-EEEEeC-CCcC-CCHHHHH--------------HhHHHHHHHHHHHHhcCCCCE
Confidence            3588999999999999998765543 333322 2222 3332222              112345666777888999999


Q ss_pred             EEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHH-HhCCHHHHHHHHhcCcCCCHHHHHHcC
Q 026137          104 VAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFRE-KVGSATARRDVLLRAKKIKGEEALRMG  182 (243)
Q Consensus       104 Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~-~~g~~~~a~~l~l~g~~~~a~eA~~~G  182 (243)
                      |++|-|.+.+||.....+||++++.++ ++++       +..|.+.+..+-+ ..- ...+.+    .-.++++++++.|
T Consensus       263 ISVViGeGgSGGAlalg~aD~VlMle~-A~ys-------VisPEgaAsILwkd~~~-A~eAAe----alkitA~dL~~~G  329 (431)
T PLN03230        263 IATVIGEGGSGGALAIGCGNRMLMMEN-AVYY-------VASPEACAAILWKSAAA-APKAAE----ALRITAAELVKLG  329 (431)
T ss_pred             EEEEeCCCCcHHHHHhhcCCEEEEecC-CEEE-------ecCHHHHHHHHhccccc-hHHHHH----HcCCCHHHHHhCC
Confidence            999999996666655557899999998 6554       3235454544433 222 222333    3389999999999


Q ss_pred             chhhhcCC
Q 026137          183 LVEAAYDS  190 (243)
Q Consensus       183 lv~~vv~~  190 (243)
                      +||+|++.
T Consensus       330 iID~II~E  337 (431)
T PLN03230        330 VVDEIVPE  337 (431)
T ss_pred             CCeEeccC
Confidence            99999975

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=98.50  E-value=3.3e-05  Score=66.52  Aligned_cols=138  Identities=17%  Similarity=0.189  Sum_probs=91.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026137           24 HRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPT  103 (243)
Q Consensus        24 N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~  103 (243)
                      -+++++-+....+.++.++.-.-+- +-++-+ +++++ |.+.++.              -..+.+.+.+..+....+|+
T Consensus       130 G~~~p~g~rKa~R~m~lA~~f~iPv-VtlvDT-pGa~~-g~~aE~~--------------G~~~aia~~l~a~s~~~VP~  192 (316)
T TIGR00513       130 GMPAPEGYRKALRLMKMAERFKMPI-ITFIDT-PGAYP-GIGAEER--------------GQSEAIARNLREMARLGVPV  192 (316)
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCCE-EEEEEC-CCCCC-CHHHHHH--------------HHHHHHHHHHHHHHcCCCCE
Confidence            3588999999999999988765443 333333 33322 3322211              12345666777788999999


Q ss_pred             EEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCc
Q 026137          104 VAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGL  183 (243)
Q Consensus       104 Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Gl  183 (243)
                      |++|-|.|.|||......||++++.++ +.++       +..|.+.+..+-+.-.   ++.+..- -..+++.++++.|+
T Consensus       193 IsVViGeggsGGAla~~~aD~v~m~~~-a~~s-------VisPEg~a~Il~kd~~---~a~~aae-~~~~ta~~l~~~G~  260 (316)
T TIGR00513       193 ICTVIGEGGSGGALAIGVGDKVNMLEY-STYS-------VISPEGCAAILWKDAS---KAPKAAE-AMKITAPDLKELGL  260 (316)
T ss_pred             EEEEecccccHHHhhhccCCEEEEecC-ceEE-------ecCHHHHHHHhccchh---hHHHHHH-HccCCHHHHHHCCC
Confidence            999999998777765557999999998 6554       3245555554433221   1222121 25678999999999


Q ss_pred             hhhhcCC
Q 026137          184 VEAAYDS  190 (243)
Q Consensus       184 v~~vv~~  190 (243)
                      ||.|+|.
T Consensus       261 iD~II~e  267 (316)
T TIGR00513       261 IDSIIPE  267 (316)
T ss_pred             CeEeccC
Confidence            9999975

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=98.46  E-value=3.8e-05  Score=72.09  Aligned_cols=137  Identities=16%  Similarity=0.228  Sum_probs=94.8

Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137           25 RLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV  104 (243)
Q Consensus        25 ~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I  104 (243)
                      +++++-+.-..+.++.++...-+- +-++-+. ++++ |...+..              -..+.+.+.+..+....+|+|
T Consensus       222 ~~~peGyRKAlRlmkLAekfgLPI-VtLVDTp-GA~p-G~~AEe~--------------Gq~~aIArnl~amasl~VP~I  284 (762)
T PLN03229        222 MPTPHGYRKALRMMYYADHHGFPI-VTFIDTP-GAYA-DLKSEEL--------------GQGEAIAHNLRTMFGLKVPIV  284 (762)
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCCE-EEEEECC-CcCC-CchhHHH--------------hHHHHHHHHHHHHhCCCCCEE
Confidence            578888999999999988765543 3344333 3332 3322221              123456677778889999999


Q ss_pred             EEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCch
Q 026137          105 AAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLV  184 (243)
Q Consensus       105 a~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv  184 (243)
                      ++|-|.|.|||......||++++.++ ++++       +..|.+++..+-+--.   ++.+ ....-.++|++.++.|+|
T Consensus       285 SVViGeggSGGAlA~g~aD~VlMle~-A~~s-------VisPEgaAsILwkd~~---~A~e-AAe~lkiTa~dL~~lGii  352 (762)
T PLN03229        285 SIVIGEGGSGGALAIGCANKLLMLEN-AVFY-------VASPEACAAILWKSAK---AAPK-AAEKLRITAQELCRLQIA  352 (762)
T ss_pred             EEEeCCcchHHHHHhhcCCEEEEecC-CeEE-------ecCHHHHHHHHhcCcc---cHHH-HHHHcCCCHHHHHhCCCC
Confidence            99999999888887778999999988 5553       3245555555544322   2222 334567999999999999


Q ss_pred             hhhcCC
Q 026137          185 EAAYDS  190 (243)
Q Consensus       185 ~~vv~~  190 (243)
                      |+|+|.
T Consensus       353 D~IIpE  358 (762)
T PLN03229        353 DGIIPE  358 (762)
T ss_pred             eeeccC
Confidence            999975

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.36  E-value=2.1e-05  Score=63.54  Aligned_cols=138  Identities=16%  Similarity=0.107  Sum_probs=89.5

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCCC-EEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137           26 LGPSAIDSILSAIAQAKAEATPG-SAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV  104 (243)
Q Consensus        26 l~~~~~~~l~~~l~~~~~~~~~~-~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I  104 (243)
                      ++.+..+++...|..++.+...+ ..+.|-+      .|+++..                    ...++..+..++.||.
T Consensus        34 i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INS------pGG~v~~--------------------g~aIyd~m~~~~~~V~   87 (196)
T PRK12551         34 VTSDSANRIVAQLLFLEAEDPEKDIYLYINS------PGGSVYD--------------------GLGIFDTMQHVKPDVH   87 (196)
T ss_pred             ecHHHHHHHHHHHHHhhccCCCCCEEEEEeC------CCcchhh--------------------HHHHHHHHHhcCCCEE
Confidence            88899999999999998543222 1344444      3443332                    2345666778888999


Q ss_pred             EEECCccchhHHHHHHhcCE--EEEecCccceeccccccCCC--CChhh--HH-----------HHHHHhCC-HHHHHHH
Q 026137          105 AAVNGHAAAAGFILALSHDY--VVMRRDKGVLYMSEVDIGLT--LPDYC--AA-----------LFREKVGS-ATARRDV  166 (243)
Q Consensus       105 a~v~G~~~G~G~~lal~~D~--~ia~~~~a~f~~p~~~~G~~--~p~~g--~~-----------~l~~~~g~-~~~a~~l  166 (243)
                      ..+.|.|.+.|.-+++++|-  |++.++ +++......-|..  ..+.-  +.           .+.++-|. .....++
T Consensus        88 t~~~G~AaS~AslIl~aG~~~~R~~~p~-a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~  166 (196)
T PRK12551         88 TVCVGLAASMGAFLLCAGAKGKRSSLQH-SRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQED  166 (196)
T ss_pred             EEEEEEehhHHHHHHhCCCCCceecCCC-CEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            99999999999999999885  888887 6676544432220  11110  00           12233331 1233444


Q ss_pred             HhcCcCCCHHHHHHcCchhhhcCC
Q 026137          167 LLRAKKIKGEEALRMGLVEAAYDS  190 (243)
Q Consensus       167 ~l~g~~~~a~eA~~~Glv~~vv~~  190 (243)
                      +-...-++|+||+++||||+|+++
T Consensus       167 ~~rd~~msa~EA~eyGliD~I~~~  190 (196)
T PRK12551        167 TDRDFFMSPSEAVEYGLIDLVIDK  190 (196)
T ss_pred             hhcCcCCCHHHHHHcCCCcEEecc
Confidence            445566999999999999999976

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=98.33  E-value=1.8e-05  Score=64.91  Aligned_cols=135  Identities=11%  Similarity=0.045  Sum_probs=88.5

Q ss_pred             CCHHHHHHHHHHHHHHHhcC---CCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026137           26 LGPSAIDSILSAIAQAKAEA---TPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMP  102 (243)
Q Consensus        26 l~~~~~~~l~~~l~~~~~~~---~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp  102 (243)
                      +|..+.+++...|..++..+   .+  .+.|-+.|      +++..                    ...++..+...+.|
T Consensus        63 Idd~~a~~i~aqLl~L~~~~~~~~I--~lyINSpG------Gsv~a--------------------GlaIyd~m~~~~~~  114 (221)
T PRK14514         63 IDDYTANTIQAQLLYLDSVDPGKDI--SIYINSPG------GSVYA--------------------GLGIYDTMQFISSD  114 (221)
T ss_pred             EcHHHHHHHHHHHHHHhccCCCCCE--EEEEECCC------cchhh--------------------HHHHHHHHHhcCCC
Confidence            78888888888887777532   33  34554444      33221                    23456677888999


Q ss_pred             EEEEECCccchhHHHHHHhcCE--EEEecCccceeccccccCCCCChhh-----HH-----------HHHHHhCC-HHHH
Q 026137          103 TVAAVNGHAAAAGFILALSHDY--VVMRRDKGVLYMSEVDIGLTLPDYC-----AA-----------LFREKVGS-ATAR  163 (243)
Q Consensus       103 ~Ia~v~G~~~G~G~~lal~~D~--~ia~~~~a~f~~p~~~~G~~~p~~g-----~~-----------~l~~~~g~-~~~a  163 (243)
                      |...+-|.|.+.|.-|++++|.  |++.++ +++.+....-|. .....     +.           .+.++.|. ....
T Consensus       115 V~tv~~G~AAS~AslIl~aG~~gkR~~~pn-a~iMiHqP~~~~-~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I  192 (221)
T PRK14514        115 VATICTGMAASMASVLLVAGTKGKRSALPH-SRVMIHQPLGGA-QGQASDIEITAREIQKLKKELYTIIADHSGTPFDKV  192 (221)
T ss_pred             EEEEEEEEehhHHHHHHhcCCCCceeeCCC-CEEEeccCCccc-CCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence            9999999999999999999996  889888 777654443232 11111     00           01223341 2233


Q ss_pred             HHHHhcCcCCCHHHHHHcCchhhhcCC
Q 026137          164 RDVLLRAKKIKGEEALRMGLVEAAYDS  190 (243)
Q Consensus       164 ~~l~l~g~~~~a~eA~~~Glv~~vv~~  190 (243)
                      .+.+-...-++|+||+++||||+|++.
T Consensus       193 ~~~~~rd~wmtA~EA~eyGliD~Vi~~  219 (221)
T PRK14514        193 WADSDRDYWMTAQEAKEYGMIDEVLIK  219 (221)
T ss_pred             HHHhhcCccCCHHHHHHcCCccEEeec
Confidence            444555666999999999999999864

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=98.21  E-value=4.2e-07  Score=70.83  Aligned_cols=102  Identities=16%  Similarity=0.204  Sum_probs=63.2

Q ss_pred             HhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccc------------cCCC--------CChh-------
Q 026137           96 MMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVD------------IGLT--------LPDY-------  148 (243)
Q Consensus        96 l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~------------~G~~--------~p~~-------  148 (243)
                      .....|||||.++|.+..+++-++++||-+++.+. +.++...+.            +|+-        +...       
T Consensus         2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~-s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~   80 (154)
T PF01343_consen    2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPS-SSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPM   80 (154)
T ss_dssp             HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT--EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS-
T ss_pred             ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCC-CEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCC
Confidence            35689999999999999999999999999999876 555543332            2221        0001       


Q ss_pred             ---hHHHHH-----------------HHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHH
Q 026137          149 ---CAALFR-----------------EKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRL  201 (243)
Q Consensus       149 ---g~~~l~-----------------~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~  201 (243)
                         .-..+.                 |.+. ... .+-+..|..+++++|++.||||++-.. +++...+.+.
T Consensus        81 s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~-~~~-v~~~~~~~~~~~~~A~~~GLiD~i~~~-~~~~~~l~~~  150 (154)
T PF01343_consen   81 SEEERENLQELLDELYDQFVNDVAEGRGLS-PDD-VEEIADGGVFTAQQALELGLIDEIGTF-DEAIARLAKL  150 (154)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHH-HHCHHCCHEEEHHHHHHTTSSSEETSH-HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHccCCC-HHH-HHHHHhhccccHHHHHHcCchhhcCCH-HHHHHHHHHH
Confidence               001111                 1222 222 233678899999999999999999865 6665554443

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=7.2e-05  Score=66.48  Aligned_cols=156  Identities=21%  Similarity=0.316  Sum_probs=111.1

Q ss_pred             eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEe-cCCCccccCCChhhHHHcCCCcchHHHHHHH
Q 026137            7 HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITT-SHGKFFSNGFDLAWAQAAGSRTGARERVHYM   85 (243)
Q Consensus         7 ~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~-g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~   85 (243)
                      ++.|.++.++..       +++.+.+.+.+.++.++++..-  ++|+. -+++     +                    +
T Consensus        25 ~~~v~vi~i~g~-------I~~~s~~~l~r~l~~A~~~~a~--~vvl~ldTPG-----G--------------------l   70 (436)
T COG1030          25 EKKVYVIEIDGA-------IDPASADYLQRALQSAEEENAA--AVVLELDTPG-----G--------------------L   70 (436)
T ss_pred             CCeEEEEEecCc-------cCHHHHHHHHHHHHHHHhCCCc--EEEEEecCCC-----c--------------------h
Confidence            456888888865       9999999999999999987632  34442 2211     1                    2


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEC---CccchhHHHHHHhcCEEEEecCccceecccc-ccCCC-CChhh-HH-H------
Q 026137           86 FKSFRPLVAAMMDLPMPTVAAVN---GHAAAAGFILALSHDYVVMRRDKGVLYMSEV-DIGLT-LPDYC-AA-L------  152 (243)
Q Consensus        86 ~~~~~~l~~~l~~~~kp~Ia~v~---G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~-~~G~~-~p~~g-~~-~------  152 (243)
                      .+.+.++.+.+.+.|.|++..+.   +.|..+|..++++||+..+.+. +.++-... ..|-+ .+... .. .      
T Consensus        71 ~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPg-T~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~  149 (436)
T COG1030          71 LDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPG-TNIGAATPIAGGGTSAKEANTTNAAVAYIRS  149 (436)
T ss_pred             HHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCC-CcccccceecCCCCCccchhhHHHHHHHHHH
Confidence            45678899999999999888874   4699999999999999999987 66764322 23311 11111 11 1      


Q ss_pred             HHHHhC-CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHH
Q 026137          153 FREKVG-SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEA  197 (243)
Q Consensus       153 l~~~~g-~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~  197 (243)
                      +.+.-| +...|.+++.....++++||++.|++|-+..+..+++..
T Consensus       150 ~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~~~ell~~  195 (436)
T COG1030         150 LAEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIARDLNELLKK  195 (436)
T ss_pred             HHHHcCCChHHHHHHhhhccCCChhHHHhcCccccccCCHHHHHHH
Confidence            223333 345678888889999999999999999999885555443

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=98.20  E-value=6.1e-05  Score=61.03  Aligned_cols=136  Identities=13%  Similarity=0.181  Sum_probs=90.4

Q ss_pred             CCHHHHHHHHHHHHHHHhcC---CCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026137           26 LGPSAIDSILSAIAQAKAEA---TPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMP  102 (243)
Q Consensus        26 l~~~~~~~l~~~l~~~~~~~---~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp  102 (243)
                      ++.++.+++...|..++..+   .+  .+.|.+.|      +|+..                    ...++..+...+-|
T Consensus        36 i~~~~a~~ii~~Ll~L~~~~~~~~I--~l~INSpG------G~v~~--------------------GlaIyd~m~~~~~~   87 (201)
T PRK14513         36 IESQMANTIVAQLLLLDSQNPEQEI--QMYINCPG------GEVYA--------------------GLAIYDTMRYIKAP   87 (201)
T ss_pred             EcHHHHHHHHHHHHHhhccCCCCCE--EEEEECCC------Cchhh--------------------HHHHHHHHHhcCCC
Confidence            78889999988888888643   33  35554443      43332                    24466677888899


Q ss_pred             EEEEECCccchhHHHHHHhcCE--EEEecCccceeccccccCCC--CChhhH-------------HHHHHHhCC-HHHHH
Q 026137          103 TVAAVNGHAAAAGFILALSHDY--VVMRRDKGVLYMSEVDIGLT--LPDYCA-------------ALFREKVGS-ATARR  164 (243)
Q Consensus       103 ~Ia~v~G~~~G~G~~lal~~D~--~ia~~~~a~f~~p~~~~G~~--~p~~g~-------------~~l~~~~g~-~~~a~  164 (243)
                      |...+.|.|.+.|.-+++++|-  |++.++ +++-+....-|..  .++.-.             ..+.++-|. ...-.
T Consensus        88 V~Ti~~G~AaS~As~il~aG~kgkR~~~pn-a~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~  166 (201)
T PRK14513         88 VSTICVGIAMSMGSVLLMAGDKGKRMALPN-SRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLL  166 (201)
T ss_pred             EEEEEEeeehhhHHHHHhcCCCCcEEecCC-eEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence            9999999999999999999995  899888 7776554443331  111100             011223331 22334


Q ss_pred             HHHhcCcCCCHHHHHHcCchhhhcCC
Q 026137          165 DVLLRAKKIKGEEALRMGLVEAAYDS  190 (243)
Q Consensus       165 ~l~l~g~~~~a~eA~~~Glv~~vv~~  190 (243)
                      +++-...-++|+||+++||||+|+++
T Consensus       167 ~~~~rd~~msa~EA~eyGliD~I~~~  192 (201)
T PRK14513        167 RDMERDYFMSPEEAKAYGLIDSVIEP  192 (201)
T ss_pred             HHhccCcccCHHHHHHcCCCcEEecc
Confidence            44445566999999999999999976

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=98.18  E-value=0.00044  Score=58.58  Aligned_cols=139  Identities=17%  Similarity=0.226  Sum_probs=83.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhc----CCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhc
Q 026137           23 EHRLGPSAIDSILSAIAQAKAE----ATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMD   98 (243)
Q Consensus        23 ~N~l~~~~~~~l~~~l~~~~~~----~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~   98 (243)
                      .-++....-..+..+++.+.+|    ..+- +|.+.-+|+     .-+.+-         ......+.+.+.. +..+..
T Consensus        72 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~P-vV~l~dSgG-----aRlqEg---------~~~L~~~a~i~~~-~~~ls~  135 (274)
T TIGR03133        72 GGSVGEVHGAKIVGALRLAIEDNRKGQPTA-VVLLLDTGG-----VRLQEA---------NAGLIAIAEIMRA-ILDARA  135 (274)
T ss_pred             CcCCCHHHHHHHHHHHHHHHhhhhccCCCC-EEEEEcCCC-----cChhhh---------HHHHHHHHHHHHH-HHHHhC
Confidence            3467777888889999888761    1122 455543333     333221         1111111122222 223344


Q ss_pred             CCCcEEEEECCc--cchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHH--HHHHHHhcCcCCC
Q 026137           99 LPMPTVAAVNGH--AAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSAT--ARRDVLLRAKKIK  174 (243)
Q Consensus        99 ~~kp~Ia~v~G~--~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~--~a~~l~l~g~~~~  174 (243)
                      . .|+|+++-|+  |.||+..++.+||++|++++ ++++       +.    |...+-...| ..  ...+--+..+.+.
T Consensus       136 ~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~-a~i~-------~a----GP~VIe~~~G-~e~~~~~d~~l~~~~lG  201 (274)
T TIGR03133       136 A-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEE-GRLG-------LS----GPEVIEQEAG-VEEFDSRDRALVWRTTG  201 (274)
T ss_pred             C-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCC-cEEe-------cc----CHHHHHHhcC-CCccCHHHhcccccccc
Confidence            4 9999999999  89999999999999999987 6554       32    2222333344 11  1223334455677


Q ss_pred             HHHHHHcCchhhhcCCh
Q 026137          175 GEEALRMGLVEAAYDSE  191 (243)
Q Consensus       175 a~eA~~~Glv~~vv~~~  191 (243)
                      +......|++|.+++++
T Consensus       202 G~~~~~sG~~D~~v~dd  218 (274)
T TIGR03133       202 GKHRFLSGDADVLVEDD  218 (274)
T ss_pred             hHhHhhcccceEEeCCH
Confidence            77788899999999884

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=98.09  E-value=0.00067  Score=58.16  Aligned_cols=163  Identities=14%  Similarity=0.168  Sum_probs=99.5

Q ss_pred             CCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHH
Q 026137            8 GDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFK   87 (243)
Q Consensus         8 ~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~   87 (243)
                      +.-..|.-|.|. ...-+++....+.+.++++.+....-+  +|.+...|+     +.+.+   .      ....... .
T Consensus       120 G~~V~v~a~D~~-f~gGS~g~~~~eKi~r~~e~A~~~~lP--lV~l~dsgG-----armqE---g------i~sL~~~-a  181 (292)
T PRK05654        120 GMPVVLAVMDFS-FMGGSMGSVVGEKIVRAVERAIEEKCP--LVIFSASGG-----ARMQE---G------LLSLMQM-A  181 (292)
T ss_pred             CEEEEEEEEecc-cccCCccHHHHHHHHHHHHHHHHcCCC--EEEEEcCCC-----cchhh---h------hhHHHhH-H
Confidence            333334445552 124579999999999999998877544  455554443     22221   0      0011111 1


Q ss_pred             HHHHHHHHHhcCCCcEEEEECCccchhHH-HHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHH
Q 026137           88 SFRPLVAAMMDLPMPTVAAVNGHAAAAGF-ILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDV  166 (243)
Q Consensus        88 ~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~-~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l  166 (243)
                      .....+.++.....|.|+++-|+|.||+. .+++.+|++++.++ +.+++       .-|    ..+...++ ..     
T Consensus       182 k~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~-A~ig~-------aGp----rvie~~~~-e~-----  243 (292)
T PRK05654        182 KTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPK-ALIGF-------AGP----RVIEQTVR-EK-----  243 (292)
T ss_pred             HHHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecC-cEEEe-------cCH----HHHHhhhh-hh-----
Confidence            22223344566789999999999999965 56778999999775 65543       112    22222233 11     


Q ss_pred             HhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcC
Q 026137          167 LLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR  208 (243)
Q Consensus       167 ~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~  208 (243)
                      + .-+.-+++-+.+.|+||.|+++ .++.+...++.+.+...
T Consensus       244 l-pe~~~~ae~~~~~G~vD~Vv~~-~e~r~~l~~~L~~~~~~  283 (292)
T PRK05654        244 L-PEGFQRAEFLLEHGAIDMIVHR-RELRDTLASLLALHTKQ  283 (292)
T ss_pred             h-hhhhcCHHHHHhCCCCcEEECH-HHHHHHHHHHHHHHhcC
Confidence            1 1122356777899999999998 77888887777766544

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=98.09  E-value=5.2e-05  Score=63.45  Aligned_cols=164  Identities=19%  Similarity=0.187  Sum_probs=100.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026137           24 HRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPT  103 (243)
Q Consensus        24 N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~  103 (243)
                      +.++.+..+++.++++...++..+  .+++.      +.|+++..                    ..++...+..++.++
T Consensus        70 ~~I~i~dse~v~raI~~~~~~~~I--dLii~------TpGG~v~A--------------------A~~I~~~l~~~~~~v  121 (285)
T PF01972_consen   70 RYIDIDDSEFVLRAIREAPKDKPI--DLIIH------TPGGLVDA--------------------AEQIARALREHPAKV  121 (285)
T ss_pred             eeEcHhhHHHHHHHHHhcCCCCce--EEEEE------CCCCcHHH--------------------HHHHHHHHHhCCCCE
Confidence            457888888999998888776554  34443      33443332                    244666778899999


Q ss_pred             EEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHH--HHHHhcCcCCCHHHHHHc
Q 026137          104 VAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATAR--RDVLLRAKKIKGEEALRM  181 (243)
Q Consensus       104 Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a--~~l~l~g~~~~a~eA~~~  181 (243)
                      ++.|+..|..+|.-+|++||-+++.+. +.+|-...++|- .|..+.......-+ ....  .-+++..-.-.|-+..+ 
T Consensus       122 ~v~VP~~A~SAGTlIALaADeIvM~p~-a~LGpiDPqi~~-~pA~sil~~~~~K~-~~~i~D~tlIladia~KAi~q~~-  197 (285)
T PF01972_consen  122 TVIVPHYAMSAGTLIALAADEIVMGPG-AVLGPIDPQIGQ-YPAASILKAVEQKP-PDEIDDQTLILADIAEKAIRQVR-  197 (285)
T ss_pred             EEEECcccccHHHHHHHhCCeEEECCC-CccCCCCccccC-CChHHHHHHHHhcc-ccccCHHHHHHHHHHHHHHHHHH-
Confidence            999999999999999999999999987 889999999987 67665333222222 1100  11111100000111111 


Q ss_pred             CchhhhcCChhHHHHHHHHHHHHHhcCCC---CcchHHHHHH
Q 026137          182 GLVEAAYDSEERVAEASMRLGKQLAGRKC---TGEVYAEIRK  220 (243)
Q Consensus       182 Glv~~vv~~~~~l~~~a~~~a~~~~~~~~---~~~~~~~~K~  220 (243)
                      .++.+...+ .--.+++.++++.++...|   ++......|+
T Consensus       198 ~~v~~lL~~-~~~~eka~~ia~~L~~g~~tHdypi~~eea~~  238 (285)
T PF01972_consen  198 EFVKELLKD-KMDEEKAEEIAEKLSSGKWTHDYPITVEEAKE  238 (285)
T ss_pred             HHHHHHHHc-CCCHHHHHHHHHHhcCCCCCCCCCCCHHHHHH
Confidence            133333322 1114678889999888754   3445555555

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=98.08  E-value=0.00049  Score=58.75  Aligned_cols=148  Identities=14%  Similarity=0.161  Sum_probs=93.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026137           23 EHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMP  102 (243)
Q Consensus        23 ~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp  102 (243)
                      .-+++....+.+.++++.+....-+  +|.+...|++     -+.+-         ......+ ......+.++.....|
T Consensus       133 gGSmg~~~geKi~r~~e~A~~~~lP--lV~l~dSgGa-----RmqEg---------~~sL~~~-ak~~~~~~~~~~~~vP  195 (285)
T TIGR00515       133 GGSMGSVVGEKFVRAIEKALEDNCP--LIIFSASGGA-----RMQEA---------LLSLMQM-AKTSAALAKMSERGLP  195 (285)
T ss_pred             CCCccHHHHHHHHHHHHHHHHcCCC--EEEEEcCCCc-----ccccc---------hhHHHhH-HHHHHHHHHHHcCCCC
Confidence            4579999999999999998876444  5666554443     22110         1111111 1122233456667899


Q ss_pred             EEEEECCccchhHH-HHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHc
Q 026137          103 TVAAVNGHAAAAGF-ILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRM  181 (243)
Q Consensus       103 ~Ia~v~G~~~G~G~-~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~  181 (243)
                      .|+++-|+|.||+. .+++.+|++++.++ +.+++.       .|    ..+...+| ...      .-+.-+++-+.+.
T Consensus       196 ~IsVv~gpt~GG~aas~a~~~D~iia~p~-A~ig~a-------Gp----rVie~ti~-e~l------pe~~q~ae~~~~~  256 (285)
T TIGR00515       196 YISVLTDPTTGGVSASFAMLGDLNIAEPK-ALIGFA-------GP----RVIEQTVR-EKL------PEGFQTSEFLLEH  256 (285)
T ss_pred             EEEEEeCCcchHHHHHHHhCCCEEEEECC-eEEEcC-------CH----HHHHHHhc-Ccc------chhcCCHHHHHhC
Confidence            99999999999965 56789999999887 655431       12    22333333 111      1122366668899


Q ss_pred             CchhhhcCChhHHHHHHHHHHHHHhc
Q 026137          182 GLVEAAYDSEERVAEASMRLGKQLAG  207 (243)
Q Consensus       182 Glv~~vv~~~~~l~~~a~~~a~~~~~  207 (243)
                      |+||.|+++ .++.+...++.+.+..
T Consensus       257 G~vD~iv~~-~~~r~~l~~~L~~~~~  281 (285)
T TIGR00515       257 GAIDMIVHR-PEMKKTLASLLAKLQN  281 (285)
T ss_pred             CCCcEEECc-HHHHHHHHHHHHHHhh
Confidence            999999999 7787777777665443

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=98.05  E-value=0.0012  Score=56.57  Aligned_cols=176  Identities=15%  Similarity=0.183  Sum_probs=93.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcC----CCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhc
Q 026137           23 EHRLGPSAIDSILSAIAQAKAEA----TPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMD   98 (243)
Q Consensus        23 ~N~l~~~~~~~l~~~l~~~~~~~----~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~   98 (243)
                      .-++.......+..+++.+.++.    -+- +|++.-+|+.     -+.+-         ......+.+.+. .+..+..
T Consensus        81 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~P-vV~l~dSGGa-----RlqEg---------~~~L~~~a~i~~-~~~~ls~  144 (301)
T PRK07189         81 GGSVGEVHGAKLAGALELAAEDNRNGIPTA-VLLLFETGGV-----RLQEA---------NAGLAAIAEIMR-AIVDLRA  144 (301)
T ss_pred             CcCcCHHHHHHHHHHHHHHHHhCCCCCCCC-EEEEecCCCc-----Cccch---------HHHHHHHHHHHH-HHHHHhC
Confidence            45788888899999999888765    133 4555443332     22211         111111112222 2223344


Q ss_pred             CCCcEEEEECCc--cchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCC-HHHHHHHHhcCcCCCH
Q 026137           99 LPMPTVAAVNGH--AAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGS-ATARRDVLLRAKKIKG  175 (243)
Q Consensus        99 ~~kp~Ia~v~G~--~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~-~~~a~~l~l~g~~~~a  175 (243)
                      . .|+|+++-|+  |+||+...+.+||++|++++ ++++       +.-|    ..+-...|. .-...+.-+-.+.+.+
T Consensus       145 ~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~-a~ig-------laGP----~VIe~~~G~e~~d~~d~~~vw~~lGG  211 (301)
T PRK07189        145 A-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEE-GRLG-------LSGP----EVIEQEAGVEEFDSRDRALVWRTTGG  211 (301)
T ss_pred             C-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECC-cEEe-------ccCH----HHHHHhcCCcccCHHHhcccccccCc
Confidence            4 9999999999  99999999999999999987 6554       3212    222222330 0011121222222333


Q ss_pred             HHHHHcCchhhhcCChh-HHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137          176 EEALRMGLVEAAYDSEE-RVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       176 ~eA~~~Glv~~vv~~~~-~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~  231 (243)
                      ......|.+|.+++++. .+.+.+..+.+   ... .+...+..+..+.....+..+
T Consensus       212 ~h~~~sG~~D~~v~dd~~a~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~rl~~~~  264 (301)
T PRK07189        212 KHRYLSGLADALVDDDVAAFRAAALALLA---RGP-FPAAHRSAEQARLLARLARFD  264 (301)
T ss_pred             ceeeecccceEEeCCHHHHHHHHHHHHHh---ccC-CChHHHHHHHHHHHHHHHHhc
Confidence            44556899999998843 23333333322   221 133334445555554445444

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=98.01  E-value=0.00092  Score=61.81  Aligned_cols=170  Identities=15%  Similarity=0.118  Sum_probs=105.3

Q ss_pred             EEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHH
Q 026137           11 FVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFR   90 (243)
Q Consensus        11 ~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~   90 (243)
                      .-|.-|+|. ...-++++...+...+.++.+.+..-+  +|.+.-.++ |..|.+-+              .........
T Consensus       317 V~vvAnd~~-~~~G~~~~~~~~K~~r~i~~a~~~~lP--lV~lvDs~G-~~~g~~~E--------------~~g~~~~~a  378 (512)
T TIGR01117       317 VGIIANQPK-VMAGCLDIDSSDKIARFIRFCDAFNIP--IVTFVDVPG-FLPGVNQE--------------YGGIIRHGA  378 (512)
T ss_pred             EEEEEeccc-cccCCCCHHHHHHHHHHHHHHHHcCCC--EEEEEeCcC-ccccHHHH--------------HHHHHHHHH
Confidence            334445552 123369999999999999988875444  444443333 55554322              122344566


Q ss_pred             HHHHHHhcCCCcEEEEECCccchhHHHHHHh----cCEEEEecCccceeccccccCCCCChhhHHHHHH-HhC---CHHH
Q 026137           91 PLVAAMMDLPMPTVAAVNGHAAAAGFILALS----HDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFRE-KVG---SATA  162 (243)
Q Consensus        91 ~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~----~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~-~~g---~~~~  162 (243)
                      +++.++.....|.|+.|-|.+.|+|+.-++.    +|++++.++ +.+       |+..|...+..+.+ .+.   ....
T Consensus       379 ~~~~a~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~-a~~-------~v~~pe~a~~i~~~~~l~~~~~~~~  450 (512)
T TIGR01117       379 KVLYAYSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPT-AEI-------AVMGPAGAANIIFRKDIKEAKDPAA  450 (512)
T ss_pred             HHHHHHHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCC-CeE-------eecCHHHHHHHHhhhhcccccCHHH
Confidence            7788888899999999999999886644432    899999887 655       44234443433322 211   0111


Q ss_pred             HHHHH---hcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhc
Q 026137          163 RRDVL---LRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAG  207 (243)
Q Consensus       163 a~~l~---l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~  207 (243)
                      ++...   ..-+..++..+.+.|+||.|+++ .++.....+..+.+..
T Consensus       451 ~~~~~~~~~~~~~~~~~~~a~~g~vD~VI~P-~~tR~~l~~~l~~~~~  497 (512)
T TIGR01117       451 TRKQKIAEYREEFANPYKAAARGYVDDVIEP-KQTRPKIVNALAMLES  497 (512)
T ss_pred             HHHHHHHHHHHhhcCHHHHHhcCCCCeeECh-HHHHHHHHHHHHHHhc
Confidence            11111   12234578899999999999998 6677766666655443

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=97.99  E-value=0.00015  Score=68.08  Aligned_cols=107  Identities=16%  Similarity=0.181  Sum_probs=73.3

Q ss_pred             eCCEEEEEEcC-C--CCCCCCCCC----------HHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcC
Q 026137            7 HGDVFVLTLTG-S--SNVDEHRLG----------PSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAG   73 (243)
Q Consensus         7 ~~~v~~i~ln~-p--~~~~~N~l~----------~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~   73 (243)
                      ++.+++|.++. +  +..+.+.+.          ...+.++.++|+++..|+.|+ .||+.-.+   +.|.++..+    
T Consensus        41 ~~~~L~l~~~gg~i~e~~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~A~~D~~Ik-gIvL~i~~---~~g~~~~~~----  112 (584)
T TIGR00705        41 SSGALLLDLPVGDVTDQSPRVSLQGTLLGNPKGRAISLFDIVNAIRQAADDRRIE-GLVFDLSN---FSGWDSPHL----  112 (584)
T ss_pred             CCeEEEEECCCCcccCcCCCCchhhhhccCCCcCCcCHHHHHHHHHHHhcCCCce-EEEEEccC---CCCCCHHHH----
Confidence            57888888884 2  211222221          235789999999999999999 78887531   223333221    


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceec
Q 026137           74 SRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYM  136 (243)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~  136 (243)
                                   +.+.+.+..+....|||||..++++ -+|+-++.+||.+++.+. +.+++
T Consensus       113 -------------~ei~~ai~~fk~sgKpVvA~~~~~~-s~~YylAs~AD~I~~~p~-G~v~~  160 (584)
T TIGR00705       113 -------------VEIGSALSEFKDSGKPVYAYGTNYS-QGQYYLASFADEIILNPM-GSVDL  160 (584)
T ss_pred             -------------HHHHHHHHHHHhcCCeEEEEEcccc-chhhhhhhhCCEEEECCC-ceEEe
Confidence                         2344455566678999999988876 578999999999999886 55543

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=97.95  E-value=0.0016  Score=54.26  Aligned_cols=153  Identities=13%  Similarity=0.130  Sum_probs=88.0

Q ss_pred             CCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHH-HhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHH
Q 026137            8 GDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQA-KAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMF   86 (243)
Q Consensus         8 ~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~-~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~   86 (243)
                      +.-..+.=|.|.   . .++..-...+.+.+... +.+..+= +|.+-=.+ .|-.|..-++              .-..
T Consensus        31 G~~V~vIa~~~~---~-~~g~~~~~k~A~~v~~~~d~~f~~P-Iv~lvDtp-G~~~g~~aE~--------------~G~~   90 (238)
T TIGR03134        31 GGKVTVIGVVPD---A-EVGLDEALALAQAVLDVIEADDKRP-IVVLVDTP-SQAYGRREEL--------------LGIN   90 (238)
T ss_pred             CEEEEEEEECCC---C-cCChHHHHHHHHHHHHHHHhcCCCC-EEEEEeCC-CCCCCHHHHH--------------HHHH
Confidence            333334445552   2 68877777788888775 4445544 44443222 2333332222              1223


Q ss_pred             HHHHHHHHHHh---cCCCcEEEEECCccchhHHH-HHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCHH
Q 026137           87 KSFRPLVAAMM---DLPMPTVAAVNGHAAAAGFI-LALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSAT  161 (243)
Q Consensus        87 ~~~~~l~~~l~---~~~kp~Ia~v~G~~~G~G~~-lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~~  161 (243)
                      +.+.+++..+.   ..+.|+|+.|-|.++|||+. +.+.+|.++|.++ +.+       +. ++.-+ +..+.+-..   
T Consensus        91 ~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~-A~i-------~v-m~~e~aa~I~~~~~~---  158 (238)
T TIGR03134        91 QALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPG-AMV-------HV-MDLESMARVTKRSVE---  158 (238)
T ss_pred             HHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCC-cEE-------Ee-cCHHHHHHHHccCHh---
Confidence            33444444444   56699999999999998874 4444888888876 555       44 34344 333333322   


Q ss_pred             HHHHHHhcC--cCCCHHHHHHcCchhhhcCChh
Q 026137          162 ARRDVLLRA--KKIKGEEALRMGLVEAAYDSEE  192 (243)
Q Consensus       162 ~a~~l~l~g--~~~~a~eA~~~Glv~~vv~~~~  192 (243)
                      ...++.-.-  ...+.+.+.+.|+||.|+++.+
T Consensus       159 ~~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~~  191 (238)
T TIGR03134       159 ELEALAKSSPVFAPGIENFVKLGGVHALLDVAD  191 (238)
T ss_pred             HHHHHHHhhhhhccCHHHHHhCCCccEEeCCCC
Confidence            223332221  2467788999999999998743

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=97.93  E-value=0.00039  Score=55.91  Aligned_cols=141  Identities=19%  Similarity=0.261  Sum_probs=86.5

Q ss_pred             EEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCE-EEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHH
Q 026137           13 LTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGS-AFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRP   91 (243)
Q Consensus        13 i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~-~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (243)
                      |.|..|       ++..+...+...+..++.++..+- .+.|-+.|+...+|.                          .
T Consensus        30 I~l~g~-------I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~--------------------------A   76 (200)
T COG0740          30 IFLGGE-------IEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGL--------------------------A   76 (200)
T ss_pred             EEEeee-------echHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhH--------------------------H
Confidence            566665       555566666666666665432221 355555554443333                          3


Q ss_pred             HHHHHhcCCCcEEEEECCccchhHHHHHHhcCEE--EEecCccceeccccccCCCCChhhHHH-----------------
Q 026137           92 LVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYV--VMRRDKGVLYMSEVDIGLTLPDYCAAL-----------------  152 (243)
Q Consensus        92 l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~--ia~~~~a~f~~p~~~~G~~~p~~g~~~-----------------  152 (243)
                      ++..+...+.||...+-|.+...|..|++++|..  ++.++ +++-..... |. .-|-....                 
T Consensus        77 Iydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPn-srimIHqP~-gg-~~G~a~Di~i~A~ei~~~~~~l~~i  153 (200)
T COG0740          77 IYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPN-ARIMIHQPS-GG-AQGQASDIEIHAREILKIKERLNRI  153 (200)
T ss_pred             HHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCC-ceEEEecCC-cc-CccCHHHHHHHHHHHHHHHHHHHHH
Confidence            5667788999999999999999999999999985  88887 666443333 33 11111111                 


Q ss_pred             HHHHhCCHHHH--HHHHhcCcCCCHHHHHHcCchhhhcCC
Q 026137          153 FREKVGSATAR--RDVLLRAKKIKGEEALRMGLVEAAYDS  190 (243)
Q Consensus       153 l~~~~g~~~~a--~~l~l~g~~~~a~eA~~~Glv~~vv~~  190 (243)
                      +...-| ....  ....-...-++|+||+++||||+|...
T Consensus       154 ~a~~TG-q~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~  192 (200)
T COG0740         154 YAEHTG-QTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIES  192 (200)
T ss_pred             HHHHcC-CCHHHHHHhhcccccCCHHHHHHcCCcceeccc
Confidence            111222 1111  112222344999999999999999977

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=97.82  E-value=0.00081  Score=55.20  Aligned_cols=142  Identities=13%  Similarity=0.163  Sum_probs=89.4

Q ss_pred             CHHHHHHHHHHHHHHHhcC---CCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026137           27 GPSAIDSILSAIAQAKAEA---TPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPT  103 (243)
Q Consensus        27 ~~~~~~~l~~~l~~~~~~~---~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~  103 (243)
                      +..+.+.+...|-.++.+.   .+  -+.|-+.|+...+|-=+...                 .....++..+...+-+|
T Consensus        50 ~~~~a~~iiaqLl~L~~~~~~k~I--~lyINSpGGsv~~G~~iG~v-----------------~~glaIyD~m~~ik~~V  110 (222)
T PRK12552         50 GMDVTELIIAQLLYLEFDDPEKPI--YFYINSTGTSWYTGDAIGFE-----------------TEAFAICDTMRYIKPPV  110 (222)
T ss_pred             hHhHHHHHHHHHHHHhccCCCCCE--EEEEeCCCCCcccccccccc-----------------ccHHHHHHHHHhcCCCe
Confidence            3348888888888886543   34  46777776655555211111                 12344666777788899


Q ss_pred             EEEECCccchhHHHHHHhcCE--EEEecCccceeccccccCCCCChhhHHH-----------------HHHHhCC-HHHH
Q 026137          104 VAAVNGHAAAAGFILALSHDY--VVMRRDKGVLYMSEVDIGLTLPDYCAAL-----------------FREKVGS-ATAR  163 (243)
Q Consensus       104 Ia~v~G~~~G~G~~lal~~D~--~ia~~~~a~f~~p~~~~G~~~p~~g~~~-----------------l~~~~g~-~~~a  163 (243)
                      ...+-|.|.+.+.-|++++|-  |++.++ +++-+....-|.  -|-....                 +..+-|. ...-
T Consensus       111 ~Tv~~G~AaS~AslIl~aG~kg~R~alpn-s~iMIHqP~~~~--~G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I  187 (222)
T PRK12552        111 HTICIGQAMGTAAMILSAGTKGQRASLPH-ATIVLHQPRSGA--RGQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKL  187 (222)
T ss_pred             EEEEEeehhhHHHHHHhCCCCCceecCCC-cEEEeccCCccc--ccCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            999999999999999999995  888888 777655444333  1111111                 1112220 1122


Q ss_pred             HHHHhcCcCCCHHHHHHcCchhhhcCC
Q 026137          164 RDVLLRAKKIKGEEALRMGLVEAAYDS  190 (243)
Q Consensus       164 ~~l~l~g~~~~a~eA~~~Glv~~vv~~  190 (243)
                      .+.+-.-.-++|+||+++||||+|+.+
T Consensus       188 ~~d~~rd~wmsA~EA~eyGliD~Ii~~  214 (222)
T PRK12552        188 SKDTDRMFYLTPQEAKEYGLIDRVLES  214 (222)
T ss_pred             HHHhcCCCcCCHHHHHHcCCCcEEecc
Confidence            233333345999999999999999975

>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed

Probab=97.72  E-value=0.0044  Score=52.94  Aligned_cols=145  Identities=11%  Similarity=0.105  Sum_probs=87.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHH-HhcCCC
Q 026137           23 EHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAA-MMDLPM  101 (243)
Q Consensus        23 ~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~k  101 (243)
                      .-++....-+.+.++++.+.+..-+  +|++..+|+     +-+.+-.         .....+.+. ...+.+ ...-..
T Consensus       146 gGSmG~v~geKi~ra~e~A~~~rlP--lV~l~~SGG-----ARmQEg~---------~sL~qmak~-saa~~~~~~~~~v  208 (296)
T CHL00174        146 GGSMGSVVGEKITRLIEYATNESLP--LIIVCASGG-----ARMQEGS---------LSLMQMAKI-SSALYDYQSNKKL  208 (296)
T ss_pred             ccCcCHHHHHHHHHHHHHHHHcCCC--EEEEECCCC-----ccccccc---------hhhhhhHHH-HHHHHHHHHcCCC
Confidence            4578888999999999998876544  555654433     3332110         001111111 111222 224679


Q ss_pred             cEEEEECCccchhHHH-HHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHH
Q 026137          102 PTVAAVNGHAAAAGFI-LALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALR  180 (243)
Q Consensus       102 p~Ia~v~G~~~G~G~~-lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~  180 (243)
                      |.|+++.|+|.||+.. +++.||++|+.++ +.+       |+    .|.......+| ..      +.-+.=+++-.++
T Consensus       209 P~Isvl~gPt~GG~aas~a~l~Diiiae~~-A~I-------gf----AGPrVIe~t~g-e~------lpe~fq~ae~l~~  269 (296)
T CHL00174        209 FYISILTSPTTGGVTASFGMLGDIIIAEPN-AYI-------AF----AGKRVIEQTLN-KT------VPEGSQAAEYLFD  269 (296)
T ss_pred             CEEEEEcCCCchHHHHHHHHcccEEEEeCC-eEE-------Ee----eCHHHHHHhcC-Cc------CCcccccHHHHHh
Confidence            9999999999999865 4777999998544 644       33    22222333333 11      1122236777889


Q ss_pred             cCchhhhcCChhHHHHHHHHHHHH
Q 026137          181 MGLVEAAYDSEERVAEASMRLGKQ  204 (243)
Q Consensus       181 ~Glv~~vv~~~~~l~~~a~~~a~~  204 (243)
                      .|+||.+|+. .++.+...++.+-
T Consensus       270 ~G~vD~iV~r-~~lr~~l~~ll~~  292 (296)
T CHL00174        270 KGLFDLIVPR-NLLKGVLSELFQL  292 (296)
T ss_pred             CcCceEEEcH-HHHHHHHHHHHHh
Confidence            9999999998 6777766655443

>PRK10949 protease 4; Provisional

Probab=97.70  E-value=0.00049  Score=64.88  Aligned_cols=84  Identities=18%  Similarity=0.241  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEECC
Q 026137           30 AIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNG  109 (243)
Q Consensus        30 ~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G  109 (243)
                      .+.++.++|+++.+|+.|+ .||+.-.+  +. |.....                 .+.+.+.+..+....||+||..+.
T Consensus        96 ~l~div~~i~~Aa~D~rIk-givL~i~s--~g-G~~~a~-----------------~~eI~~ai~~fk~sGKpVvA~~~~  154 (618)
T PRK10949         96 SLFDIVNTIRQAKDDRNIT-GIVLDLKN--FA-GADQPS-----------------MQYIGKALREFRDSGKPVYAVGDS  154 (618)
T ss_pred             cHHHHHHHHHHHhcCCCce-EEEEEeCC--CC-CccHHH-----------------HHHHHHHHHHHHHhCCeEEEEecC
Confidence            3568999999999999999 78887532  11 221111                 123445555666778999996444


Q ss_pred             ccchhHHHHHHhcCEEEEecCccceec
Q 026137          110 HAAAAGFILALSHDYVVMRRDKGVLYM  136 (243)
Q Consensus       110 ~~~G~G~~lal~~D~~ia~~~~a~f~~  136 (243)
                      + .-+++-||.+||.+++.+. +.+++
T Consensus       155 ~-~s~~YyLASaAD~I~l~P~-G~v~~  179 (618)
T PRK10949        155 Y-SQGQYYLASFANKIYLSPQ-GVVDL  179 (618)
T ss_pred             c-cchhhhhhhhCCEEEECCC-ceEEE
Confidence            4 4578999999999999886 54543

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=97.61  E-value=0.0015  Score=60.27  Aligned_cols=143  Identities=24%  Similarity=0.327  Sum_probs=90.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCC--ChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCC
Q 026137           23 EHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGF--DLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLP  100 (243)
Q Consensus        23 ~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~--D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  100 (243)
                      ..++.......+..+++.+.++.-+- +.++.      |.|.  .+.+-.         .....+...+.. ..++.. .
T Consensus        70 gGs~g~~~~~Ki~ra~~~A~~~~~P~-v~l~d------sgGa~~r~~eg~---------~~l~~~g~i~~~-~~~~~~-~  131 (493)
T PF01039_consen   70 GGSVGEVHGEKIARAIELALENGLPL-VYLVD------SGGAFLRMQEGV---------ESLMGMGRIFRA-IARLSG-G  131 (493)
T ss_dssp             GGTBSHHHHHHHHHHHHHHHHHTEEE-EEEEE------ESSBCGGGGGHH---------HHHHHHHHHHHH-HHHHHT-T
T ss_pred             cCCCCcccceeeehHHHHHHHcCCCc-EEecc------ccccccccchhh---------hhhhhhHHHHHH-HHHHhc-C
Confidence            45789999999999999999876543 33433      3344  333322         111222222232 334555 9


Q ss_pred             CcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHH---
Q 026137          101 MPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEE---  177 (243)
Q Consensus       101 kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~e---  177 (243)
                      .|+|+++.|+|.|+|..++..||++|++++.+.+       +++-|    ..+.            ..+|+.++.++   
T Consensus       132 iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i-------~l~GP----~vv~------------~~~Ge~~~~~~lgG  188 (493)
T PF01039_consen  132 IPQISVVTGPCTGGGAYLAALSDFVIMVKGTARI-------FLAGP----RVVE------------SATGEEVDSEELGG  188 (493)
T ss_dssp             S-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEE-------ESSTH----HHHH------------HHHSSCTSHHHHHB
T ss_pred             CCeEEEEccccccchhhcccccCccccCccceEE-------Eeccc----cccc------------cccCccccchhhhh
Confidence            9999999999999999999999999999874544       44212    1121            22356666654   


Q ss_pred             ----HHHcCchhhhcCChhHHHHHHHHHHHHHh
Q 026137          178 ----ALRMGLVEAAYDSEERVAEASMRLGKQLA  206 (243)
Q Consensus       178 ----A~~~Glv~~vv~~~~~l~~~a~~~a~~~~  206 (243)
                          +...|.+|.+++++++..+.++++..-+-
T Consensus       189 ~~~h~~~sG~~d~v~~de~~a~~~ir~~ls~lp  221 (493)
T PF01039_consen  189 ADVHAAKSGVVDYVVDDEEDALAQIRRLLSYLP  221 (493)
T ss_dssp             HHHHHHTSSSSSEEESSHHHHHHHHHHHHHTS-
T ss_pred             hhhhcccCCCceEEEechHHHHHHHHHhhcccc
Confidence                34789999999985555555555554443

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=97.54  E-value=0.011  Score=55.44  Aligned_cols=144  Identities=17%  Similarity=0.182  Sum_probs=86.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHH---HHhc
Q 026137           22 DEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVA---AMMD   98 (243)
Q Consensus        22 ~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~l~~   98 (243)
                      ..-+++....+.+.++++.+.+..-+  +|.+.-.|+.+-.+ ..+.+..              ...+-+++.   ++..
T Consensus       141 ~GGs~g~~~~~Ki~r~~elA~~~~lP--lV~l~DSgGarl~~-q~e~~~~--------------~~~~g~if~~~~~ls~  203 (569)
T PLN02820        141 KGGTYYPITVKKHLRAQEIAAQCRLP--CIYLVDSGGANLPR-QAEVFPD--------------RDHFGRIFYNQARMSS  203 (569)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHcCCC--EEEEEeCCCcCCcc-cccccch--------------HhHHHHHHHHHHHHhC
Confidence            34589999999999999998877554  44444333333221 1111100              001122222   3455


Q ss_pred             CCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHH
Q 026137           99 LPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEA  178 (243)
Q Consensus        99 ~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA  178 (243)
                      ...|.|+++-|+|.|||......||++|++++.+.+.       +    .|...+...            +|+.+++++.
T Consensus       204 ~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~-------~----aGP~vV~~~------------~Ge~v~~eeL  260 (569)
T PLN02820        204 AGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIF-------L----AGPPLVKAA------------TGEEVSAEDL  260 (569)
T ss_pred             CCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEE-------e----cCHHHHHhh------------cCcccCHHHh
Confidence            6799999999999999999999999999998755443       2    111122222            3334444443


Q ss_pred             -----H--HcCchhhhcCChhHHHHHHHHHHHHH
Q 026137          179 -----L--RMGLVEAAYDSEERVAEASMRLGKQL  205 (243)
Q Consensus       179 -----~--~~Glv~~vv~~~~~l~~~a~~~a~~~  205 (243)
                           .  .-|.+|.+++++.+..+.++++..-+
T Consensus       261 GGa~~h~~~sGv~d~~~~de~~a~~~~R~lls~L  294 (569)
T PLN02820        261 GGADVHCKVSGVSDHFAQDELHALAIGRNIVKNL  294 (569)
T ss_pred             CCHHHhcccccccccccCchHHHHHHHHHHHHhc
Confidence                 2  47899999988545555555554444

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=97.47  E-value=0.0057  Score=56.67  Aligned_cols=149  Identities=15%  Similarity=0.174  Sum_probs=87.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026137           23 EHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMP  102 (243)
Q Consensus        23 ~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp  102 (243)
                      .-+++......+.++++.+.++.-+  +|.+.-+|+.     .+.+-..         ....+.+.+...  ....-..|
T Consensus        95 gGS~g~~~~~K~~r~~e~A~~~~lP--lV~l~dSgGa-----rm~eg~~---------~l~~~~~~~~~~--~~~s~~iP  156 (512)
T TIGR01117        95 GGSLGEMHAAKIVKIMDLAMKMGAP--VVGLNDSGGA-----RIQEAVD---------ALKGYGDIFYRN--TIASGVVP  156 (512)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHcCCC--EEEEecCCCC-----Cccccch---------hhhhHHHHHHHH--HHHcCCCc
Confidence            4578888999999999999887655  3444433322     2211000         000111111111  11233589


Q ss_pred             EEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHH--HH
Q 026137          103 TVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEA--LR  180 (243)
Q Consensus       103 ~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA--~~  180 (243)
                      .|+++-|+|.||+......||++|++++.++++       +    .|...+....| ..      .+.+.+.+.+.  ..
T Consensus       157 ~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~-------~----aGP~vv~~~~G-e~------v~~e~lGGa~~h~~~  218 (512)
T TIGR01117       157 QISAIMGPCAGGAVYSPALTDFIYMVDNTSQMF-------I----TGPQVIKTVTG-EE------VTAEQLGGAMAHNSV  218 (512)
T ss_pred             EEEEEecCCCcHHHHHHHhcCceEEeccceEEE-------e----cChHHHHhhcC-cc------cchhhcchHHHhccc
Confidence            999999999999988878999999998744443       2    11122222233 11      12333433333  35


Q ss_pred             cCchhhhcCChhHHHHHHHHHHHHHhc
Q 026137          181 MGLVEAAYDSEERVAEASMRLGKQLAG  207 (243)
Q Consensus       181 ~Glv~~vv~~~~~l~~~a~~~a~~~~~  207 (243)
                      -|.+|.+++++++..+.++++..-+-.
T Consensus       219 sGv~d~~~~de~ea~~~~r~~ls~lp~  245 (512)
T TIGR01117       219 SGVAHFIAEDDDDCIMLIRRLLSFLPS  245 (512)
T ss_pred             cceeEEecCChHHHHHHHHHHHHhCCc
Confidence            799999999877777777777665543

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]

Probab=96.94  E-value=0.038  Score=46.38  Aligned_cols=150  Identities=12%  Similarity=0.152  Sum_probs=98.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026137           23 EHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMP  102 (243)
Q Consensus        23 ~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp  102 (243)
                      .-++..-.=+.+..+++.+-.+. +- +|+++.+|+     +-+.+-.          ...-..-.....+.++.....|
T Consensus       135 gGSmGsVvGeki~ra~E~A~e~k-~P-~v~f~aSGG-----ARMQEg~----------lSLMQMaktsaAl~~l~ea~lp  197 (294)
T COG0777         135 GGSMGSVVGEKITRAIERAIEDK-LP-LVLFSASGG-----ARMQEGI----------LSLMQMAKTSAALKRLSEAGLP  197 (294)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhC-CC-EEEEecCcc-----hhHhHHH----------HHHHHHHHHHHHHHHHHhcCCc
Confidence            45677777788888998888765 44 788876653     3332210          0001112334556677888999


Q ss_pred             EEEEECCccchh-HHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHc
Q 026137          103 TVAAVNGHAAAA-GFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRM  181 (243)
Q Consensus       103 ~Ia~v~G~~~G~-G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~  181 (243)
                      .|+.+..+..|| ...+++.-|+.||-+. +.+|       +.-|-..-+.....++          .| -=+++-.++.
T Consensus       198 yIsVLt~PTtGGVsASfA~lGDi~iAEP~-AlIG-------FAGpRVIEQTire~LP----------eg-fQ~aEfLleh  258 (294)
T COG0777         198 YISVLTDPTTGGVSASFAMLGDIIIAEPG-ALIG-------FAGPRVIEQTIREKLP----------EG-FQTAEFLLEH  258 (294)
T ss_pred             eEEEecCCCccchhHhHHhccCeeecCcc-cccc-------cCcchhhhhhhcccCC----------cc-hhhHHHHHHc
Confidence            999999999988 5699999999999655 6554       4222221222222332          11 2356778899


Q ss_pred             CchhhhcCChhHHHHHHHHHHHHHhcCC
Q 026137          182 GLVEAAYDSEERVAEASMRLGKQLAGRK  209 (243)
Q Consensus       182 Glv~~vv~~~~~l~~~a~~~a~~~~~~~  209 (243)
                      |+||.||+. .++......+.+.+...+
T Consensus       259 G~iD~iv~R-~elr~tla~ll~~~~~~~  285 (294)
T COG0777         259 GMIDMIVHR-DELRTTLASLLAKLTPQP  285 (294)
T ss_pred             CCceeeecH-HHHHHHHHHHHHHhCCCC
Confidence            999999998 788888777777776654

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=96.91  E-value=0.024  Score=47.98  Aligned_cols=136  Identities=17%  Similarity=0.283  Sum_probs=87.5

Q ss_pred             CHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 026137           27 GPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAA  106 (243)
Q Consensus        27 ~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~  106 (243)
                      +++-+..-...++.+++=.-+- +.+|--.|-+  .|..-++..+              .+...+-+..+.++++|+|+.
T Consensus       132 ~PeGyRKAlRlm~~AekF~lPi-itfIDT~GAy--pG~~AEErGQ--------------~eAIA~nL~em~~LkvPiI~i  194 (317)
T COG0825         132 RPEGYRKALRLMKLAEKFGLPI-ITFIDTPGAY--PGIGAEERGQ--------------SEAIARNLREMARLKVPIISI  194 (317)
T ss_pred             CchHHHHHHHHHHHHHHhCCCE-EEEecCCCCC--CCcchhhccc--------------HHHHHHHHHHHhCCCCCEEEE
Confidence            3777777777777777644433 3444333333  3343343322              123344455678899999999


Q ss_pred             ECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCchhh
Q 026137          107 VNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEA  186 (243)
Q Consensus       107 v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~  186 (243)
                      |=|---+||.--...+|.+++-++ ++++.      + .|-+.++.|-+-   ..++.+ .-..-.++|++.+++|+||.
T Consensus       195 VIGEGgSGGALAi~vad~V~mle~-s~ySV------i-sPEG~AsILWkD---~~ka~e-AAe~mkita~dLk~lgiID~  262 (317)
T COG0825         195 VIGEGGSGGALAIGVADRVLMLEN-STYSV------I-SPEGCASILWKD---ASKAKE-AAEAMKITAHDLKELGIIDG  262 (317)
T ss_pred             EecCCCchhhHHhhHHHHHHHHHh-ceeee------c-ChhhhhhhhhcC---hhhhHH-HHHHcCCCHHHHHhCCCcce
Confidence            999987777766667899999998 77763      2 355545544322   233333 23455799999999999999


Q ss_pred             hcCCh
Q 026137          187 AYDSE  191 (243)
Q Consensus       187 vv~~~  191 (243)
                      |++.+
T Consensus       263 II~Ep  267 (317)
T COG0825         263 IIPEP  267 (317)
T ss_pred             eccCC
Confidence            99763

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=96.83  E-value=0.11  Score=48.73  Aligned_cols=157  Identities=12%  Similarity=0.015  Sum_probs=97.0

Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137           25 RLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV  104 (243)
Q Consensus        25 ~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I  104 (243)
                      .++.+-.....+.++.++.- .+= +|.+.-.+ .|..|.+-+.              .-..+...+++.++....+|.|
T Consensus       381 ~l~~~~a~Kaarfi~lc~~~-~iP-lv~l~D~p-Gf~~G~~~E~--------------~G~~~~~a~l~~A~a~~~VP~i  443 (569)
T PLN02820        381 ILFTESALKGAHFIELCAQR-GIP-LLFLQNIT-GFMVGSRSEA--------------SGIAKAGAKMVMAVACAKVPKI  443 (569)
T ss_pred             ccCHHHHHHHHHHHHHHHhc-CCC-EEEEEECC-CCCCCHHHHH--------------hhHHHHHHHHHHHHHhCCCCEE
Confidence            47788888888888877764 443 44444332 2555553332              2346678889999999999999


Q ss_pred             EEECCccchhHHHHHH----hcCEEEEecCccceeccccccCCCCChhh-HHHHHH-Hh------C-----CHHHH-HHH
Q 026137          105 AAVNGHAAAAGFILAL----SHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFRE-KV------G-----SATAR-RDV  166 (243)
Q Consensus       105 a~v~G~~~G~G~~lal----~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~-~~------g-----~~~~a-~~l  166 (243)
                      ++|=|.++|+|..-++    ..|++++.++ +       .+|+ ++.-+ +..+.+ .+      |     ....+ ++.
T Consensus       444 svi~g~a~G~g~~aM~g~~~~~d~~~awp~-A-------~i~v-mg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~  514 (569)
T PLN02820        444 TIIVGGSFGAGNYGMCGRAYSPNFLFMWPN-A-------RIGV-MGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAK  514 (569)
T ss_pred             EEEECCcchHHHHHhcCcCCCCCEEEECCC-C-------eEEe-cCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHH
Confidence            9999999998775554    4577777665 5       4455 44444 333332 12      0     01100 111


Q ss_pred             H--hcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcC
Q 026137          167 L--LRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR  208 (243)
Q Consensus       167 ~--l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~  208 (243)
                      +  ..-+..++-.|.+.|+||.|+++ .+.........+.....
T Consensus       515 ~~~~~~~~~~p~~aa~~~~vD~VIdP-~dTR~~l~~~l~~~~~~  557 (569)
T PLN02820        515 TVEAYEREANPYYSTARLWDDGVIDP-ADTRRVLGLCLSAALNR  557 (569)
T ss_pred             HHHHHHHhCCHHHHHHcCCcCcccCH-HHHHHHHHHHHHHhhcC
Confidence            1  12234677788999999999998 55655555555444433

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=96.37  E-value=0.057  Score=49.96  Aligned_cols=167  Identities=13%  Similarity=0.150  Sum_probs=98.8

Q ss_pred             EEEcCCCCCCCC--CCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHH
Q 026137           13 LTLTGSSNVDEH--RLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFR   90 (243)
Q Consensus        13 i~ln~p~~~~~N--~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~   90 (243)
                      |.=|+|   ..+  .++++-.....+.++.++.. .+= +|.+.-. ..|..|..              .......+...
T Consensus       298 iian~~---~~~~G~~~~~~a~K~arfi~lcd~~-~iP-lv~l~dt-pGf~~g~~--------------~E~~g~~~~ga  357 (493)
T PF01039_consen  298 IIANNP---RQRAGALDPDGARKAARFIRLCDAF-NIP-LVTLVDT-PGFMPGPE--------------AERAGIIRAGA  357 (493)
T ss_dssp             EEEE-T---TCGGGEB-HHHHHHHHHHHHHHHHT-T---EEEEEEE-CEB--SHH--------------HHHTTHHHHHH
T ss_pred             EEEecc---ccccccCChHHHHHHHHHHHHHHhh-CCc-eEEEeec-ccccccch--------------hhhcchHHHHH
Confidence            444666   333  69999999999999888874 333 4555433 23444432              22223466778


Q ss_pred             HHHHHHhcCCCcEEEEECCccchhHHHHHHhc----CEEEEecCccceeccccccCCCCChhhHHHHHHH-hC-C-----
Q 026137           91 PLVAAMMDLPMPTVAAVNGHAAAAGFILALSH----DYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREK-VG-S-----  159 (243)
Q Consensus        91 ~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~----D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~-~g-~-----  159 (243)
                      +++.++..++.|+|..|-|.+.|+|.......    |+++|.++ +.+       |+..|...+..+.+. .- .     
T Consensus       358 ~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~-a~~-------~vm~~e~a~~i~~~~~~~~~~~~~~  429 (493)
T PF01039_consen  358 RLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPT-AEI-------GVMGPEGAASILYRDELEAAEAEGA  429 (493)
T ss_dssp             HHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT--EE-------ESS-HHHHHHHHTHHHHHHSCHCCH
T ss_pred             HHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhc-cee-------eecChhhhheeeehhhhhhhhcccc
Confidence            89999999999999999999999988665555    78888776 655       442233333332221 11 0     


Q ss_pred             -HH-HHHHHH-h-cCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcC
Q 026137          160 -AT-ARRDVL-L-RAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR  208 (243)
Q Consensus       160 -~~-~a~~l~-l-~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~  208 (243)
                       .. ...+.+ . .-+.-++..+...|++|.|+++ .++.....+..+...++
T Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii~p-~~tR~~l~~~l~~~~~~  481 (493)
T PF01039_consen  430 DPEAQRAEKIAEYEDELSSPYRAASRGYVDDIIDP-AETRKVLIAALEMLWQK  481 (493)
T ss_dssp             SHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEESSG-GGHHHHHHHHHHHHTTS
T ss_pred             hhHHHHHHHHHHHHHhcCCHHHHHhcCCCCCccCH-HHHHHHHHHHHHHHHhC
Confidence             00 011111 1 1223688999999999999998 66766665555544444

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.92  E-value=0.089  Score=43.77  Aligned_cols=133  Identities=14%  Similarity=0.185  Sum_probs=71.6

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCCCE-EEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137           26 LGPSAIDSILSAIAQAKAEATPGS-AFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV  104 (243)
Q Consensus        26 l~~~~~~~l~~~l~~~~~~~~~~~-~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I  104 (243)
                      ++..+-+.+...|-.++.+++-|= .+-|-+.|+.-.+|.                          .++..+..+.-||=
T Consensus       101 Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtagl--------------------------AIYDtMq~ik~~V~  154 (275)
T KOG0840|consen  101 IDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGL--------------------------AIYDTMQYIKPDVS  154 (275)
T ss_pred             CcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhh--------------------------hHHHHHHhhCCCce
Confidence            788888888888888776544330 234434333332222                          23444555555555


Q ss_pred             EEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHH-----HH---HHHhCCHHHHHHHH--hcC----
Q 026137          105 AAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAA-----LF---REKVGSATARRDVL--LRA----  170 (243)
Q Consensus       105 a~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~-----~l---~~~~g~~~~a~~l~--l~g----  170 (243)
                      ..+=|.|.+-|..|..+     .+. .-++.+|..++=+.-|.+|+.     ..   -+.+-....-.+++  -||    
T Consensus       155 Tic~G~Aas~aalLLaa-----G~K-G~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e  228 (275)
T KOG0840|consen  155 TICVGLAASMAALLLAA-----GAK-GKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLE  228 (275)
T ss_pred             eeehhhHHhHHHHHHhc-----CCC-cceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence            55557777666544443     222 256677777666555555421     11   11111001111111  234    


Q ss_pred             ---------cCCCHHHHHHcCchhhhcCC
Q 026137          171 ---------KKIKGEEALRMGLVEAAYDS  190 (243)
Q Consensus       171 ---------~~~~a~eA~~~Glv~~vv~~  190 (243)
                               +.++|+||+++||||.|++.
T Consensus       229 ~i~~d~dRd~fmsa~EA~eyGliD~v~~~  257 (275)
T KOG0840|consen  229 VIEKDMDRDRFMSAEEAKEYGLIDKVIDH  257 (275)
T ss_pred             HHHhhhcccccCCHHHHHHhcchhhhhcC
Confidence                     44999999999999999974

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=95.10  E-value=0.25  Score=45.60  Aligned_cols=143  Identities=24%  Similarity=0.283  Sum_probs=83.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCC
Q 026137           22 DEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPM  101 (243)
Q Consensus        22 ~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~k  101 (243)
                      +.-++..-....+..+.+.+.++.... +.+..+.|-.---|.  ..+.         .    +-.-+. -..++... .
T Consensus       103 ~gGt~~~~~~~Ki~r~~~~A~~~g~P~-i~l~dsgGari~~~v--~~l~---------g----~g~iF~-~~a~~Sg~-I  164 (526)
T COG4799         103 KGGTLGEMTAKKILRAQELAIENGLPV-IGLNDSGGARIQEGV--PSLA---------G----YGRIFY-RNARASGV-I  164 (526)
T ss_pred             ecccccccccchHHHHHHHHHHcCCCE-EEEEcccccccccCc--cccc---------c----chHHHH-HHHHhccC-C
Confidence            456777777788888888888876665 555554432222221  1100         0    011111 11223444 9


Q ss_pred             cEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHH----
Q 026137          102 PTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEE----  177 (243)
Q Consensus       102 p~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~e----  177 (243)
                      |.|++|-|+|.|||..+-..||++|++++.+++       .++-|+.    +-.            .||+.++++|    
T Consensus       165 PqIsvv~G~c~gGgaY~pal~D~~imv~~~~~m-------fltGP~~----ik~------------vtGe~V~~e~LGGa  221 (526)
T COG4799         165 PQISVVMGPCAGGGAYSPALTDFVIMVRDQSYM-------FLTGPPV----IKA------------VTGEEVSAEELGGA  221 (526)
T ss_pred             CEEEEEEecCcccccccccccceEEEEcCCccE-------EeeCHHH----HHh------------hcCcEeehhhccch
Confidence            999999999999999999999999999984322       2322222    111            1333333332    


Q ss_pred             ---HHHcCchhhhcCChhHHHHHHHHHHHHH
Q 026137          178 ---ALRMGLVEAAYDSEERVAEASMRLGKQL  205 (243)
Q Consensus       178 ---A~~~Glv~~vv~~~~~l~~~a~~~a~~~  205 (243)
                         +..-|.+|.+.+++++..+.++++..-+
T Consensus       222 ~vh~~~sGva~~~a~dd~~Ai~~vr~~lsyl  252 (526)
T COG4799         222 QVHARKSGVADLLAEDDEDAIELVRRLLSYL  252 (526)
T ss_pred             hhhcccccceeeeecCHHHHHHHHHHHHHhc
Confidence               2344999999988544444444444443

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=92.13  E-value=4.7  Score=37.45  Aligned_cols=167  Identities=13%  Similarity=0.130  Sum_probs=100.5

Q ss_pred             EEEcCCCCCCCC-CCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHH
Q 026137           13 LTLTGSSNVDEH-RLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRP   91 (243)
Q Consensus        13 i~ln~p~~~~~N-~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (243)
                      |.=|.|.  ..| +|+.+-...-.+.++-.. -..+= .|.+--. ..|..|-+-+.              ....+....
T Consensus       328 iIANqp~--~~~G~l~~~sa~KaArFI~~cd-~~~iP-lv~L~d~-pGFm~G~~~E~--------------~giik~Gak  388 (526)
T COG4799         328 IIANQPR--HLGGVLDIDSADKAARFIRLCD-AFNIP-LVFLVDT-PGFMPGTDQEY--------------GGIIKHGAK  388 (526)
T ss_pred             EEecCcc--ccccccchHHHHHHHHHHHhhh-ccCCC-eEEEeCC-CCCCCChhHHh--------------ChHHHhhhH
Confidence            3346663  344 799998888888884444 34554 4555433 56888875443              345677889


Q ss_pred             HHHHHhcCCCcEEEEECCccchhHHHHHH----hcCEEEEecCccceeccccccCCCCChhhH-HHHHH-HhCCHHH-H-
Q 026137           92 LVAAMMDLPMPTVAAVNGHAAAAGFILAL----SHDYVVMRRDKGVLYMSEVDIGLTLPDYCA-ALFRE-KVGSATA-R-  163 (243)
Q Consensus        92 l~~~l~~~~kp~Ia~v~G~~~G~G~~lal----~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~-~~l~~-~~g~~~~-a-  163 (243)
                      ++.++....+|.|..|-|.++|+|...+.    ..|+.+|.+        ..++++ +.+-|+ ..+.+ .+-...+ . 
T Consensus       389 l~~A~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~~AwP--------~a~iaV-MG~egAv~i~~~k~l~~~~~~~~  459 (526)
T COG4799         389 LLYAVAEATVPKITVITRKAYGGAYYVMGGKALGPDFNYAWP--------TAEIAV-MGPEGAVSILYRKELAAAERPEE  459 (526)
T ss_pred             HHhhHhhccCCeEEEEecccccceeeeecCccCCCceeEecC--------cceeee-cCHHHHHHHHHHHHhhcccCchh
Confidence            99999999999999999999999875543    355555554        445565 333343 33332 2210000 0 


Q ss_pred             -H----H-HH--hcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcC
Q 026137          164 -R----D-VL--LRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR  208 (243)
Q Consensus       164 -~----~-l~--l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~  208 (243)
                       .    + +.  ..-+-.++--|.+.|+||.|+++ .+...........+..+
T Consensus       460 ~~~~~~~~~~~eY~~~~~~p~~aa~r~~iD~vI~p-~~tR~~L~~~l~~~~~k  511 (526)
T COG4799         460 REALLRKQLIAEYEEQFSNPYYAAERGYIDAVIDP-ADTRAVLGRALSALANK  511 (526)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHhCCCCcccCH-HHHHHHHHHHHHHHhcC
Confidence             0    0 00  11122566678889999999998 44544444444444444

>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3

Probab=88.11  E-value=1.6  Score=37.96  Aligned_cols=80  Identities=23%  Similarity=0.258  Sum_probs=51.7

Q ss_pred             CHHHHHHHHHHHHHHHhcC---CCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026137           27 GPSAIDSILSAIAQAKAEA---TPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPT  103 (243)
Q Consensus        27 ~~~~~~~l~~~l~~~~~~~---~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~  103 (243)
                      ......++.++|+.+...+   .+-++||.+|.|       .++++...               .-..+.++|..+|.||
T Consensus        53 G~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGG-------s~eDL~~F---------------N~e~varai~~~~~Pv  110 (319)
T PF02601_consen   53 GEGAAASIVSALRKANEMGQADDFDVIIIIRGGG-------SIEDLWAF---------------NDEEVARAIAASPIPV  110 (319)
T ss_pred             ccchHHHHHHHHHHHHhccccccccEEEEecCCC-------ChHHhccc---------------ChHHHHHHHHhCCCCE
Confidence            3456788899999998654   445366666744       33333221               1256788999999999


Q ss_pred             EEEECCccchhHHHHHHhcCEEEEecC
Q 026137          104 VAAVNGHAAAAGFILALSHDYVVMRRD  130 (243)
Q Consensus       104 Ia~v~G~~~G~G~~lal~~D~~ia~~~  130 (243)
                      |++| ||-.-- .-.=+.+|+|..|+.
T Consensus       111 isaI-GHe~D~-ti~D~vAd~ra~TPt  135 (319)
T PF02601_consen  111 ISAI-GHETDF-TIADFVADLRAPTPT  135 (319)
T ss_pred             EEec-CCCCCc-hHHHHHHHhhCCCHH
Confidence            9987 333222 223467888988886

1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity

>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins

Probab=86.14  E-value=7.2  Score=32.36  Aligned_cols=97  Identities=12%  Similarity=0.163  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHH-HHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGF-ILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~-~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~  160 (243)
                      .+.+.-...+.+..-+...-|||+.|-|.+++||| ...+.+|..||-++ +..       -. ++--.+.+.+++-  .
T Consensus        87 i~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~rl~AL~g-a~i-------~v-M~~~s~ARVTk~~--v  155 (234)
T PF06833_consen   87 INQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANRLIALPG-AMI-------HV-MGKPSAARVTKRP--V  155 (234)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcchhcCCC-Cee-------ec-CChHHhHHHhhcC--H
Confidence            34445556666777788999999999999999987 67788898888764 322       22 2333345555442  2


Q ss_pred             HHHHHHHhcCcC--CCHHHHHHcCchhhhcC
Q 026137          161 TARRDVLLRAKK--IKGEEALRMGLVEAAYD  189 (243)
Q Consensus       161 ~~a~~l~l~g~~--~~a~eA~~~Glv~~vv~  189 (243)
                      ..-.++--+--+  ++.+--.++|.++++.+
T Consensus       156 e~Le~la~s~PvfA~gi~ny~~lG~l~~l~~  186 (234)
T PF06833_consen  156 EELEELAKSVPVFAPGIENYAKLGALDELWD  186 (234)
T ss_pred             HHHHHHhhcCCCcCCCHHHHHHhccHHHHhc
Confidence            333344433333  56677789999999998

Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]

Probab=85.91  E-value=17  Score=33.13  Aligned_cols=154  Identities=12%  Similarity=0.011  Sum_probs=91.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026137           24 HRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPT  103 (243)
Q Consensus        24 N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~  103 (243)
                      -.|..+.-..-.+.++...+. .+- .|.+-..++ |-.|.+.+...              +.+....++.+.....+|-
T Consensus       363 G~L~s~sa~KgarfIe~c~q~-~IP-Li~l~ni~G-fm~g~~~e~~g--------------IaK~gAklv~a~a~akvpk  425 (536)
T KOG0540|consen  363 GVLFSESAVKGARFIELCDQR-NIP-LIFLQNITG-FMVGRAAEAGG--------------IAKHGAKLVYAVACAKVPK  425 (536)
T ss_pred             cccchhhhhhhHHHHHHHHhc-CCc-EEEEEccCC-ccccchhhhhc--------------hhhhhhhhhhhhhhccCce
Confidence            356666666666666555543 444 455555544 98888776432              3345567888888999999


Q ss_pred             EEEECCccchhHHH---HHHhcCEEEEecCccceeccccccCCCCChhhHH-HHHH-----HhCCHHHHHHHHhcCcCCC
Q 026137          104 VAAVNGHAAAAGFI---LALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAA-LFRE-----KVGSATARRDVLLRAKKIK  174 (243)
Q Consensus       104 Ia~v~G~~~G~G~~---lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~-~l~~-----~~g~~~~a~~l~l~g~~~~  174 (243)
                      |..+-|.+.||-..   ..++-|+.++.++ +++++-.        +-++. .+.+     .....+.+.|.+  |.|+.
T Consensus       426 ITiit~~syGG~y~m~sr~~~gd~~yawP~-A~IavmG--------~~~a~~Vi~q~~~e~a~~~~~~~~E~f--~npy~  494 (536)
T KOG0540|consen  426 ITIITGGSYGGNYAMCSRGYSGDINYAWPN-ARIAVMG--------GKQAANVIFQITLEKAVALKAPYIEKF--GNPYY  494 (536)
T ss_pred             EEEEecCccCCcccccccccCCceeEEccc-ceeeecc--------ccchhhhhhhhhhhhhhhhcchHHHHh--cCccH
Confidence            99999999997655   3466788888776 6655321        11211 2221     121112223333  66665


Q ss_pred             HHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCC
Q 026137          175 GEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRK  209 (243)
Q Consensus       175 a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~  209 (243)
                         |...||.|.|+++ .+.....-...+..+.+|
T Consensus       495 ---a~~Rg~~D~II~p-~~tR~vl~~~l~~~~~~p  525 (536)
T KOG0540|consen  495 ---AAARGWDDGIIDP-SDTRKVLGLDLQAAANKP  525 (536)
T ss_pred             ---HHHhhccccccCh-hHhhHHHHHHHHHHhcCC
Confidence               4678999999988 444443333334444443

>TIGR00237 xseA exodeoxyribonuclease VII, large subunit

Probab=85.66  E-value=2.8  Score=38.22  Aligned_cols=80  Identities=20%  Similarity=0.224  Sum_probs=51.2

Q ss_pred             CHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 026137           27 GPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAA  106 (243)
Q Consensus        27 ~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~  106 (243)
                      ..+...++..+|+.++..+++-++||.+|.|       .++++-..               .-..+.+++.++|.|||++
T Consensus       168 G~~a~~~i~~al~~~~~~~~~dviii~RGGG-------s~eDL~~F---------------n~e~~~rai~~~~~Pvis~  225 (432)
T TIGR00237       168 GEGAVQSIVESIELANTKNECDVLIVGRGGG-------SLEDLWSF---------------NDEKVARAIFLSKIPIISA  225 (432)
T ss_pred             CccHHHHHHHHHHHhhcCCCCCEEEEecCCC-------CHHHhhhc---------------CcHHHHHHHHcCCCCEEEe
Confidence            4556788899998888766566355555543       23333221               1156788999999999998


Q ss_pred             ECCccchhHHHHHHhcCEEEEecC
Q 026137          107 VNGHAAAAGFILALSHDYVVMRRD  130 (243)
Q Consensus       107 v~G~~~G~G~~lal~~D~~ia~~~  130 (243)
                      | ||-.-- .-.=+.+|.|..|+.
T Consensus       226 i-GHe~D~-ti~D~vAd~ra~TPt  247 (432)
T TIGR00237       226 V-GHETDF-TISDFVADLRAPTPS  247 (432)
T ss_pred             c-CcCCCc-cHHHHhhhccCCCcH
Confidence            7 222211 123467899998886

This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	243
1uiy_A	253	Crystal Structure Of Enoyl-Coa Hydratase From Therm		1e-04
3lke_A	263	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		8e-04

>pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus Thermophilus Hb8 Length = 253

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 71/165 (43%), Gaps = 7/165 (4%)
Query: 22  DEHRLGPSAIDSILSAI-AQAKAEATPG-SAFITTSHGKFFSNGFDLAWAQAAGSRTGAR 79
           D  R  P + +  LS + A    EA PG  A + T  GK FS G DLA+ +   +  GA 
Sbjct: 16  DPERRNPLSPEXALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERV-TELGAE 74
Query: 80  ERVHYMFKSFRPLVAAMMDLPMPTXXXXXXXXXXXXFILALSHDYVVMRRDKGVLYMSEV 139
           E   +     R L   +   P PT              LAL+ D VV   +  + Y +EV
Sbjct: 75  ENYRHSLSLXR-LFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVXDEEARLGY-TEV 132
Query: 140 DIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLV 184
            IG         L R  VG   A +D+LL  + ++  EA  +GLV
Sbjct: 133 KIGFVAALVSVILVR-AVGEKAA-KDLLLTGRLVEAREAKALGLV 175

>pdb|3LKE|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Halodurans Length = 263

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 11/168 (6%)
Query: 33  SILSAIAQAKAEATPGSAFITTSHGKFFSNG---FDLAWAQAAGSRTGARERVHYMFKSF 89
           S+L AI     E +  S  + + H  +FS+G    DL    +  S    RE +H +    
Sbjct: 35  SLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQSDVRLREVLHVL---- 90
Query: 90  RPLVAAMMDLPMPTXXXXXXXXXXXXFILALSHDY-VVMRRDKGVLYMSEVDIGLTLPDY 148
              V  +   P  T            F + L+ D  + +RR K +    ++ I    PD 
Sbjct: 91  NHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGIS---PDL 147
Query: 149 CAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAE 196
            A+ F  ++       ++LL  K    EEALR+GL++   ++++ + E
Sbjct: 148 GASYFLPRIIGYEQTMNLLLEGKLFTSEEALRLGLIQEICENKQELQE 195

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	243
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	8e-24
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	3e-23
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	5e-23
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 11251J, struct	3e-22
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	4e-21
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	7e-21
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	7e-21
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	7e-21
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	7e-21
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	2e-20
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	2e-20
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	2e-20
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	2e-20
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	3e-20
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	3e-19
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	4e-19
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	5e-19
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	1e-18
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	6e-18
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	2e-17
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	3e-17
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	4e-17
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	7e-17
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	8e-17
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	1e-16
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	2e-16
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	3e-16
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	3e-16
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	2e-15
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	3e-15
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	3e-15
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	6e-15
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	6e-15
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	7e-15
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	7e-15
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	1e-14
3t3w_A	279	Probable enoyl-COA hydratase; ssgcid, structural g	2e-14
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	4e-14
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	5e-14
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	5e-14
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	1e-13
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	1e-13
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	1e-13
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	7e-13
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	1e-12
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	2e-12
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	9e-12
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	1e-11
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	2e-11
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	5e-11
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	6e-11
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	6e-11
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	1e-10
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	1e-10
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	1e-10
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	1e-10
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	2e-10
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	2e-10
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	2e-10
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	4e-10
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	5e-10
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	8e-10
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	9e-10
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	2e-09
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	4e-09
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	5e-09
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	6e-09
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	1e-08
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	4e-08
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	5e-08
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	2e-07

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233

 Score = 94.6 bits (236), Expect = 8e-24
 Identities = 51/205 (24%), Positives = 85/205 (41%), Gaps = 15/205 (7%)

Query: 5   EKHGDVFVLTLT-GSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNG 63
                + V+ +  G  NV    LGP+   ++  AI  A  +     A +   + + FS G
Sbjct: 10  THDDAIGVIRMDDGKVNV----LGPTMQQALNEAIDAADRDNV--GALVIAGNHRVFSGG 63

Query: 64  FDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHD 123
           FDL     +G    A + +   F+        ++  P P V A  GHA A G  L  S D
Sbjct: 64  FDLKVL-TSGEAKPAIDMLRGGFELSY----RLLSYPKPVVIACTGHAIAMGAFLLCSGD 118

Query: 124 YVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGL 183
           + V       +  +EV IG+T+P     + + ++  +  ++   L AK   GE AL  G 
Sbjct: 119 HRVA-AHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGL-AKTFFGETALAAGF 176

Query: 184 VEAAYDSEERVAEASMRLGKQLAGR 208
           ++     E  ++ A     ++ AG 
Sbjct: 177 IDEISLPEVVLSRA-EEAAREFAGL 200

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280

 Score = 94.2 bits (235), Expect = 3e-23
 Identities = 41/178 (23%), Positives = 64/178 (35%), Gaps = 10/178 (5%)

Query: 35  LSAIAQA--KAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPL 92
              I +A   A        + T +G ++S+G DL          G  E+        R  
Sbjct: 55  YHEIMRALKAASKDDSIITVLTGNGDYYSSGNDLT-NFTDIPPGGVEEKAKNNAVLLREF 113

Query: 93  VAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAAL 152
           V   +D P P +A VNG A      L    D V    D+   +     +G + P+ C++ 
Sbjct: 114 VGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYA-SDRATFHTPFSHLGQS-PEGCSSY 171

Query: 153 F--REKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
              +  +  A A  ++L+  KK+   EA   GLV   +       E      K  A  
Sbjct: 172 TFPK-IMSPAKA-TEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEV-WTRLKAFAKL 226

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232

 Score = 92.3 bits (230), Expect = 5e-23
 Identities = 52/205 (25%), Positives = 81/205 (39%), Gaps = 16/205 (7%)

Query: 5   EKHGDVFVLTLT-GSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNG 63
                V  LTL  G  N     + P  I +  +A+ QA+ +    +  I T      S G
Sbjct: 11  HLDDGVATLTLNNGKVNA----ISPDVIIAFNAALDQAEKDR---AIVIVTGQPGILSGG 63

Query: 64  FDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHD 123
           +DL         T + E    +      L   M+  P P + A  GHA A G  L LS D
Sbjct: 64  YDLK------VMTSSAEAAINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSAD 117

Query: 124 YVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGL 183
           Y +       + ++EV IG+T+      L R+++  +   R V+  A+    E A+  G 
Sbjct: 118 YRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRSVIN-AEMFDPEGAMAAGF 176

Query: 184 VEAAYDSEERVAEASMRLGKQLAGR 208
           ++     EE    A + +  QL   
Sbjct: 177 LDKVVSVEELQGAA-LAVAAQLKKI 200

>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263

 Score = 91.1 bits (227), Expect = 3e-22
 Identities = 49/212 (23%), Positives = 84/212 (39%), Gaps = 21/212 (9%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR------LGPSAIDSILSAIAQAKAEATPGSAFITTSHGK 58
           E   D   +TL                L      S+L AI     E +  S  + + H  
Sbjct: 9   EIQNDALYITL--------DYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRA 60

Query: 59  FFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFIL 118
           +FS+G  L       S   +  R+  +       V  +   P  TVA +NG+A   GF +
Sbjct: 61  YFSSGPRLEDLLICAS-DQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNM 119

Query: 119 ALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALF--REKVGSATARRDVLLRAKKIKGE 176
            L+ D  +    +     +   +G++ PD  A+ F  R  +G      ++LL  K    E
Sbjct: 120 MLACDRRIA-LRRAKFLENFHKMGIS-PDLGASYFLPR-IIGYEQT-MNLLLEGKLFTSE 175

Query: 177 EALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
           EALR+GL++   ++++ + E      K ++  
Sbjct: 176 EALRLGLIQEICENKQELQERVKNYLKAVSEG 207

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280

 Score = 88.2 bits (219), Expect = 4e-21
 Identities = 37/204 (18%), Positives = 61/204 (29%), Gaps = 16/204 (7%)

Query: 3   TSEKHGDVFVLTLTGSSNVDEHR--LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFF 60
           +    G  F++ L       ++   L       +   +  A          I  S G+FF
Sbjct: 12  SYRIEGPFFIIHL----INPDNLNALEGEDYIYLGELLELADRNRDVY-FTIIQSSGRFF 66

Query: 61  SNGFDLAWAQAAGSRTGA------RERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAA 114
           S+G D      A             + V         +  A +      +  +NG A   
Sbjct: 67  SSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGL 126

Query: 115 GFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAA-LFREKVGSATARRDVLLRAKKI 173
              L    D V    DK  L     ++GL   +         K G+ T   + L+  K  
Sbjct: 127 SAALVALCDIVYSINDKVYLLYPFANLGLI-TEGGTTVSLPLKFGTNTT-YECLMFNKPF 184

Query: 174 KGEEALRMGLVEAAYDSEERVAEA 197
           K +     G +   ++     AEA
Sbjct: 185 KYDIMCENGFISKNFNMPSSNAEA 208

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267

 Score = 87.6 bits (218), Expect = 7e-21
 Identities = 48/219 (21%), Positives = 84/219 (38%), Gaps = 21/219 (9%)

Query: 3   TSEKHGDVFVLTLTGSSNVDEHR--LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFF 60
            +   G V  LTL    N   +R  L  + +  +   +  A ++       +    G  F
Sbjct: 14  PAATGGPVARLTL----NSPHNRNALSTALVSQLHQGLRDASSDPAV-RVVVLAHTGGTF 68

Query: 61  SNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILAL 120
             G DL+ A + GS + A +      +    L+ A+++  +P +AA++GH  A GF L  
Sbjct: 69  CAGADLSEAGSGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVG 128

Query: 121 SHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALR 180
           + D  V         ++E  IG+  P   +     K+ +  A R   L  +K     A  
Sbjct: 129 ACDIAVAGPR-SSFALTEARIGV-APAIISLTLLPKLSARAAAR-YYLTGEKFDARRAEE 185

Query: 181 MGLV-EAAYDSEERVAE----------ASMRLGKQLAGR 208
           +GL+  AA D +  + +            +   K L   
Sbjct: 186 IGLITMAAEDLDAAIDQLVTDVGRGSPQGLAASKALTTA 224

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269

 Score = 87.6 bits (218), Expect = 7e-21
 Identities = 46/211 (21%), Positives = 83/211 (39%), Gaps = 22/211 (10%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR------LGPSAIDSILSAIAQAKAEATPGSAFITTSHGK 58
                V  +T+                L   A+  +  A+ +A+ + + G+  IT +   
Sbjct: 8   RVEDGVAEITI--------KLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGA-ED 58

Query: 59  FFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFIL 118
            F  GF L          G R+        +  ++  ++ +  P +AA+NG AA  G  +
Sbjct: 59  AFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGI 118

Query: 119 ALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAA--LFREKVGSATARRDVLLRAKKIKGE 176
           +L+ D  +   D      +   IG+   D   +  L R  VG   A  +++L  + +  E
Sbjct: 119 SLASDMAIC-ADSAKFVCAWHTIGIG-NDTATSYSLAR-IVGMRRA-MELMLTNRTLYPE 174

Query: 177 EALRMGLVEAAYDSEERVAEASMRLGKQLAG 207
           EA   GLV   Y  +E    A  ++ ++LA 
Sbjct: 175 EAKDWGLVSRVYPKDEFREVA-WKVARELAA 204

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279

 Score = 87.7 bits (218), Expect = 7e-21
 Identities = 47/206 (22%), Positives = 79/206 (38%), Gaps = 14/206 (6%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR--LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSN 62
           E    V  +TL       +    L   A   +   +A+         A +    G+ F +
Sbjct: 22  EITDGVATVTL----ARPDKLNALTFEAYADLRDLLAELSRRRAVR-ALVLAGEGRGFCS 76

Query: 63  GFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSH 122
           G D+     A         + +  +    +V A+ + P P +AA++G AA AG +LAL+ 
Sbjct: 77  GGDVDEIIGATLSMDTARLLDFN-RMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAA 135

Query: 123 DYVVMRRDKGVLYMSEVDIGLTLPDY--CAALFREKVGSATARRDVLLRAKKIKGEEALR 180
           D+ V              +GL+  D      L R  VG   A   +L+    ++  EA R
Sbjct: 136 DFRVA-DPSTRFAFLFTRVGLSGGDMGAAYLLPR-VVGLGHA-TRLLMLGDTVRAPEAER 192

Query: 181 MGLVEAAYDSEERVAEASMRLGKQLA 206
           +GL+    +       A   L ++LA
Sbjct: 193 IGLISELTEEGRADEAA-RTLARRLA 217

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264

 Score = 87.2 bits (217), Expect = 7e-21
 Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 11/185 (5%)

Query: 26  LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYM 85
           + P+    +       +A     +  +    G  FS G      +   +   A  RV   
Sbjct: 34  MPPALHRGLARVWRDLEAVEGVRAVLLRGE-GGVFSAGGSFGLIEEMRASHEALLRV--- 89

Query: 86  FKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTL 145
           F   R LV   ++ P P VAAV   A  AG  LAL+ D  V+      L    + +G+  
Sbjct: 90  FWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVV-GKGTRLLDGHLRLGVA- 147

Query: 146 PDYCAALF--REKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGK 203
               A L      VG A A +  LL  + + GEEA R+GLV  A + E+   +A + + +
Sbjct: 148 AGDHAVLLWPL-LVGMAKA-KYHLLLNEPLTGEEAERLGLVALAVEDEKVYEKA-LEVAE 204

Query: 204 QLAGR 208
           +LA  
Sbjct: 205 RLAQG 209

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255

 Score = 86.1 bits (214), Expect = 2e-20
 Identities = 47/208 (22%), Positives = 83/208 (39%), Gaps = 25/208 (12%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR--LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSN 62
           E  G V  + L    +  E    +    ++ +   I  A+A+ +  +  +T + G+ F +
Sbjct: 11  EHDGAVLRIRL----DRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGA-GRAFCS 65

Query: 63  GFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSH 122
           G DL     AG+                 +V A+  LP P +A V+G A   G  LAL+ 
Sbjct: 66  GGDLTGGDTAGAADA-----------ANRVVRAITSLPKPVIAGVHGAAVGFGCSLALAC 114

Query: 123 DYVVMRRDKGVLYMSEVDIGLTLPDYCAALF--REKVGSATARRDVLLRAKKIKGEEALR 180
           D VV         ++   +GL  PD  A+       +G A   R  +  A+KI    A  
Sbjct: 115 DLVVA-APASYFQLAFTRVGLM-PDGGASALLPL-LIGRARTSRMAMT-AEKISAATAFE 170

Query: 181 MGLVEAAYDSEERVAEASMRLGKQLAGR 208
            G++     ++E  +     + + ++G 
Sbjct: 171 WGMISHITSADEYESVL-TDVLRSVSGG 197

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291

 Score = 86.6 bits (215), Expect = 2e-20
 Identities = 40/178 (22%), Positives = 65/178 (36%), Gaps = 10/178 (5%)

Query: 35  LSAIAQA--KAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPL 92
           +  I  A   A A      + ++ G  F  G D         R         M  + +  
Sbjct: 53  IKEIVNALNSAAADDSKLVLFSAAGSVFCCGLDFG-YFVKHLRNNRNTASLEMVDTIKNF 111

Query: 93  VAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAAL 152
           V   +    P V +VNG A   G  +    D V    +K          G + PD C+++
Sbjct: 112 VNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWA-NEKAWFQTPYTTFGQS-PDGCSSI 169

Query: 153 F--REKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
              +  +G A+A  ++L+  +K+   EA   GLV   + +     E  M   K+LA  
Sbjct: 170 TFPK-MMGKASA-NEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEV-MIQIKELASY 224

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261

 Score = 86.1 bits (214), Expect = 2e-20
 Identities = 42/178 (23%), Positives = 68/178 (38%), Gaps = 10/178 (5%)

Query: 35  LSAIAQA--KAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPL 92
           +  +  A   A A      + ++ G  F  G D  +     +    RE    M ++ R  
Sbjct: 35  MREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRE-STKMAEAIRNF 93

Query: 93  VAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAAL 152
           V   +    P + AVNG A   G  +    D V    +K          G + PD C+ +
Sbjct: 94  VNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWA-NEKAWFQTPYTTFGQS-PDGCSTV 151

Query: 153 F--REKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
              +  +G A+A  ++LL  +K+  +EA   GLV   +       E  M   K+LA  
Sbjct: 152 MFPK-IMGGASA-NEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEV-MVRIKELASC 206

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272

 Score = 85.7 bits (213), Expect = 3e-20
 Identities = 48/185 (25%), Positives = 73/185 (39%), Gaps = 11/185 (5%)

Query: 26  LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYM 85
           +GP     +         +       +    GK FS+G               R R+   
Sbjct: 37  VGPQMHRDLADVWPVIDRDPDVRVVLVRGE-GKAFSSGGSFELIDETIGDYEGRIRI--- 92

Query: 86  FKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTL 145
            +  R LV  +++L  P V+A+ G A  AG ++AL  D  V       +      +G+  
Sbjct: 93  MREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVA-SATAKIIDGHTKLGVA- 150

Query: 146 PDYCAALF--REKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGK 203
               AA+      VG A A +  LL  + + GEEA R+GLV    D +E +  A  RL +
Sbjct: 151 AGDHAAICWPL-LVGMAKA-KYYLLTCETLSGEEAERIGLVSTCVDDDEVLPTA-TRLAE 207

Query: 204 QLAGR 208
            LA  
Sbjct: 208 NLAQG 212

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257

 Score = 83.0 bits (206), Expect = 3e-19
 Identities = 55/208 (26%), Positives = 87/208 (41%), Gaps = 20/208 (9%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR--LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSN 62
           E  G V  LTL    N  +            +  A+ QA A+       IT + G+ F  
Sbjct: 8   EVKGQVAWLTL----NRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGA-GRAFCA 62

Query: 63  GFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSH 122
           G DL         T   +    +   + P++ A+  L  P VAAVNG AA AG  LAL+ 
Sbjct: 63  GEDL------SGVTEEMDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALAC 116

Query: 123 DYVVMRRDKGVLYMSEVDIGLTLPDYCAALF--REKVGSATARRDVLLRAKKIKGEEALR 180
           D+ ++  +K     + + +GL  PD     +  R  VG A A  ++ +  +K+  EEA  
Sbjct: 117 DFRLL-SEKASFAPAFIHVGLV-PDAGHLYYLPR-LVGRAKA-LELAVLGEKVTAEEAAA 172

Query: 181 MGLVEAAYDSEERVAEASMRLGKQLAGR 208
           +GL        +   E   +  ++L+  
Sbjct: 173 LGLATKVIPLSDWEEEV-KQFAERLSAM 199

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298

 Score = 83.1 bits (206), Expect = 4e-19
 Identities = 36/179 (20%), Positives = 59/179 (32%), Gaps = 11/179 (6%)

Query: 50  AFITTSHGKFFSNGFDL---AWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAA 106
             + T  G+ F  G  L     A          +  +            +  L  P +AA
Sbjct: 77  VIVLTGRGRGFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAA 136

Query: 107 VNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALF--REKVGSATARR 164
           +NG     G   AL  D                  GL   ++  +    R     A A  
Sbjct: 137 INGPCVGIGLTQALMCDVRFA-AAGAKFAAVFARRGLI-AEFGISWILPR-LTSWAVA-L 192

Query: 165 DVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLY 223
           D+LL  +    EEA ++GLV+     E+ +  A +   + +A         A I++ +Y
Sbjct: 193 DLLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRA-LEYAEDIARYCSP-SSMAVIKRQVY 249

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256

 Score = 82.2 bits (204), Expect = 5e-19
 Identities = 56/212 (26%), Positives = 82/212 (38%), Gaps = 26/212 (12%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR------LGPSAIDSILSAIAQAKAEATPGSAFITTSHGK 58
           +    V  LTL        +R         +  D+   A+  A  +       + T  G+
Sbjct: 11  DDDNRVRTLTL--------NRPEALNAFNEALYDATAQALLDAADDPQVA-VVLLTGSGR 61

Query: 59  FFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFIL 118
            FS G DLA  QA  +     E        FR L+ A+   P P + AVNG     G  +
Sbjct: 62  GFSAGTDLAEMQARITDPNFSE----GKFGFRGLIKALAGFPKPLICAVNGLGVGIGATI 117

Query: 119 ALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALF--REKVGSATARRDVLLRAKKIKGE 176
               D   M      L      +G+  P+  ++    +  VG   A   +L+ ++ I  E
Sbjct: 118 LGYADLAFM-SSTARLKCPFTSLGVA-PEAASSYLLPQ-LVGRQNA-AWLLMSSEWIDAE 173

Query: 177 EALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
           EALRMGLV      EE + EA  R  + LA +
Sbjct: 174 EALRMGLVWRICSPEELLPEA-RRHAEILAAK 204

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267

 Score = 81.1 bits (201), Expect = 1e-18
 Identities = 35/214 (16%), Positives = 63/214 (29%), Gaps = 25/214 (11%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR--LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSN 62
                V  +T     +  E    +  + I+  L  + Q +      +  +     + F  
Sbjct: 12  RFQASVCYITF----HRPEANNTINDTLIEECLQVLNQCETSTV--TVVVLEGLPEVFCF 65

Query: 63  GFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSH 122
           G D         R     +     +    L   +   P  T++ V G   A G     + 
Sbjct: 66  GADFQEIYQEMKRG---RKQASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSAT 122

Query: 123 DYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMG 182
           D  +         +SE+  GL  P         ++G   A   + L  K I  +EA   G
Sbjct: 123 DIAIA-DQTASFSLSELLFGL-YPACVLPFLIRRIGRQKAHY-MTLMTKPISVQEASEWG 179

Query: 183 LVEAAYDSEERVAEA-----------SMRLGKQL 205
           L++A     + +               +   KQ 
Sbjct: 180 LIDAFDAESDVLLRKHLLRLRRLNKKGIAHYKQF 213

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263

 Score = 79.3 bits (196), Expect = 6e-18
 Identities = 38/179 (21%), Positives = 60/179 (33%), Gaps = 6/179 (3%)

Query: 31  IDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAW-AQAAGSRTGARERVHYMFKSF 89
           I ++  A+ +A  +       +    G+ F  G DL    +        R  V  +F++ 
Sbjct: 35  IAALHDALRRAMGDDHVH-VLVIHGPGRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEAC 93

Query: 90  RPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC 149
             L+  +   P PT+A V G A AAG  L  + D            +  V  G       
Sbjct: 94  SALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYA-SPAARFCLPGVQNGGFCTTPA 152

Query: 150 AALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
            A+ R  +G      ++ L       + AL  GL+                L   LA R
Sbjct: 153 VAVSR-VIGRRAV-TEMALTGATYDADWALAAGLINRILPEAALATHV-ADLAGALAAR 208

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254

 Score = 77.6 bits (192), Expect = 2e-17
 Identities = 38/215 (17%), Positives = 66/215 (30%), Gaps = 37/215 (17%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR------LGPSAIDSILSAIAQAKAEATPGSAFITTSHGK 58
           E+    +  TL         R      L    +++++  +  A  E  P    +    G+
Sbjct: 12  ERRPAAWTFTL--------SRPEKRNALSAELVEALIDGVDAAHREQVP--LLVFAGAGR 61

Query: 59  FFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFIL 118
            FS GFD    +   S      R+  +    +     +   P  T+A  +G    AG  L
Sbjct: 62  NFSAGFDFTDYETQ-SEGDLLLRMVRIEMLLQ----RVAGSPSLTLALAHGRNFGAGVDL 116

Query: 119 ALSHDYVVMRRDKGVLYMSEVDIGLT-----LPDYCAALFREKVGSATARRDVLLRAKKI 173
             +  +      +    M  +  GL        D         VG+  A   +L  A+  
Sbjct: 117 FAACKWRYC-TPEAGFRMPGLKFGLVLGTRRFRDI--------VGADQA-LSILGSARAF 166

Query: 174 KGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
             +EA R+G V       +  A       +     
Sbjct: 167 DADEARRIGFVRDCAAQAQWPALI-DAAAEAATAL 200

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334

 Score = 78.3 bits (193), Expect = 3e-17
 Identities = 35/195 (17%), Positives = 67/195 (34%), Gaps = 14/195 (7%)

Query: 26  LGPSAIDSILSAIAQAKAEATPGSAFIT------TSHGKFFSNGFDLA------WAQAAG 73
             P  +D +   +  A+     G   +T         G  F +G D        +  A+G
Sbjct: 81  FRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASG 140

Query: 74  SRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGV 133
                 +           +   +  +P   +  VNG AA  G  L +  D  +  R+   
Sbjct: 141 DTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYAR 200

Query: 134 LYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEER 193
              ++ D+G     Y +A    +VG   A R++    +    E+  +MG V A  +  E 
Sbjct: 201 FKQTDADVGSFDGGYGSAYLARQVGQKFA-REIFFLGRTYTAEQMHQMGAVNAVAEHAEL 259

Query: 194 VAEASMRLGKQLAGR 208
                ++   ++  +
Sbjct: 260 ETVG-LQWAAEINAK 273

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266

 Score = 77.2 bits (191), Expect = 4e-17
 Identities = 41/212 (19%), Positives = 66/212 (31%), Gaps = 27/212 (12%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR------LGPSAIDSILSAIAQAKAEATPGSAFITTSHGK 58
              G V  L +        +R      L       I  A+ +A          +      
Sbjct: 10  NLEGGVLTLAI--------NRPEAKNALYGELYLWIAKALDEADQNKDVR-VVVLRGAEH 60

Query: 59  FFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFIL 118
            F+ G D+           A             L+ +   L  P + AV G A   G  +
Sbjct: 61  DFTAGNDMKDFMGFVQNPNAGPA---GQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTI 117

Query: 119 ALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALF--REKVGSATARRDVLLRAKKIKGE 176
            L  D V    +  +  +  V +GL  P+  A+    + + G   A  ++L  AKK   E
Sbjct: 118 LLQADLVFA-DNTALFQIPFVSLGL-SPEGGASQLLVK-QAGYHKA-AELLFTAKKFNAE 173

Query: 177 EALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
            AL+ GLV    +        +    + L   
Sbjct: 174 TALQAGLVNEIVEDAY---ATAQATAQHLTAL 202

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243

 Score = 76.0 bits (188), Expect = 7e-17
 Identities = 45/208 (21%), Positives = 86/208 (41%), Gaps = 22/208 (10%)

Query: 4   SEKHGDVFVLTLTGSSNVDEHR--LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFS 61
           +E    V  +T+      +  R    PS ++ +    +            I T +G +FS
Sbjct: 7   TELGNGVVQITM----KDESSRNGFSPSIVEGLRHCFSVVAQNQQYK-VVILTGYGNYFS 61

Query: 62  NGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALS 121
           +G    +      +T     V         L   ++D  +P +AA+ GH+   G +L L 
Sbjct: 62  SGASKEFLI---RKTRGEVEVL-------DLSGLILDCEIPIIAAMQGHSFGGGLLLGLY 111

Query: 122 HDYVVMRRDKGVLYMSEVDIGLTLPDYCAALF-REKVGSATARRDVLLRAKKIKGEEALR 180
            D+VV    + V   + +  G T P    +L  REK+GS  A ++++   +  +G+E   
Sbjct: 112 ADFVVF-SQESVYATNFMKYGFT-PVGATSLILREKLGSELA-QEMIYTGENYRGKELAE 168

Query: 181 MGLVEAAYDSEERVAEASMRLGKQLAGR 208
            G+       ++ +  A  +LG+++A  
Sbjct: 169 RGIPFPVVSRQDVLNYA-QQLGQKIAKS 195

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276

 Score = 76.5 bits (189), Expect = 8e-17
 Identities = 41/207 (19%), Positives = 73/207 (35%), Gaps = 19/207 (9%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR--LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSN 62
              G + ++TL    N  +    +       +     +   + T  +A IT + G+ FS 
Sbjct: 33  RADGALRIITL----NRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGA-GRAFSA 87

Query: 63  GFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSH 122
           G D  + +     +   +      +  R +V  M    +P VAAVNG A   G  L    
Sbjct: 88  GGDFGYLK---ELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALS 144

Query: 123 DYVVMRRDKGVLYMSEVDIGLTLPDYCAALF--REKVGSATARRDVLLRAKKIKGEEALR 180
           D V +  +   L    V +GL        L      +    A ++  L   +I  + A+ 
Sbjct: 145 DIVYI-AENAYLADPHVQVGLV-AADGGPLTWPL-HISLLLA-KEYALTGTRISAQRAVE 200

Query: 181 MGLVEAAYDSEERVAEASMRLGKQLAG 207
           +GL     D        ++   K++  
Sbjct: 201 LGLANHVAD---DPVAEAIACAKKILE 224

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265

 Score = 76.1 bits (188), Expect = 1e-16
 Identities = 48/206 (23%), Positives = 81/206 (39%), Gaps = 20/206 (9%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR--LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSN 62
           E    V VLTL    +    R          + +A  +   +       +T +    F +
Sbjct: 12  EIRDGVAVLTL----HGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGA-PPAFCS 66

Query: 63  GFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSH 122
           G  ++ A    +     +       S  P+  A  +L  P +AAVNGHA   G  LAL  
Sbjct: 67  GAQISAAAETFAAPRNPDF------SASPVQPAAFELRTPVIAAVNGHAIGIGMTLALHA 120

Query: 123 DYVVMRRDKGVLYMSEVDIGLTLPDYCAALF--REKVGSATARRDVLLRAKKIKGEEALR 180
           D  ++  ++G   + +V  G+  PD  A     R  VG+A A  ++LL       + A+ 
Sbjct: 121 DIRIL-AEEGRYAIPQVRFGV-APDALAHWTLPR-LVGTAVA-AELLLTGASFSAQRAVE 176

Query: 181 MGLVEAAYDSEERVAEASMRLGKQLA 206
            GL      + + +  A +R+   +A
Sbjct: 177 TGLANRCLPAGKVLGAA-LRMAHDIA 201

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257

 Score = 75.0 bits (185), Expect = 2e-16
 Identities = 36/208 (17%), Positives = 69/208 (33%), Gaps = 19/208 (9%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR--LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSN 62
           E+ G V ++T+    + +        +A D +         +       +T + G  F N
Sbjct: 21  ERDGGVLLVTV----HTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGT-GPSFCN 75

Query: 63  GFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSH 122
             D                   +    + L+  ++ + +P +AAVNG        + +  
Sbjct: 76  EIDFTSFNLGTPHDWDE-----IIFEGQRLLNNLLSIEVPVIAAVNG-PVTNAPEIPVMS 129

Query: 123 DYVVMRRDKGVLYMSEVDIGLTLPDYCAALF--REKVGSATARRDVLLRAKKIKGEEALR 180
           D V+               G+  P   A +      +GS    R  LL  +++    AL 
Sbjct: 130 DIVLAAESATFQDGPHFPSGIV-PGDGAHVVWPH-VLGSNRG-RYFLLTGQELDARTALD 186

Query: 181 MGLVEAAYDSEERVAEASMRLGKQLAGR 208
            G V      +E +  A   L + +A +
Sbjct: 187 YGAVNEVLSEQELLPRA-WELARGIAEK 213

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268

 Score = 74.9 bits (185), Expect = 3e-16
 Identities = 38/181 (20%), Positives = 68/181 (37%), Gaps = 15/181 (8%)

Query: 31  IDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFR 90
           +  +   +  A  +       +  ++GK FS G DL W Q+  + T   E          
Sbjct: 33  LTEMRIRLDSAINDTNVR-VIVLKANGKHFSAGADLTWMQSMANFT--EEENLEDSLVLG 89

Query: 91  PLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCA 150
            L+ ++   P PT+A V G A   G  LA + D  +          SEV +GL      A
Sbjct: 90  NLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIA-STSARFCFSEVKLGLI----PA 144

Query: 151 ----ALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLA 206
                + R  +G   A+  + + A+      A  + LV+     +  +    ++   Q++
Sbjct: 145 VISPYVVR-AIGERAAKM-LFMSAEVFDATRAYSLNLVQHCVPDDTLLEFT-LKYASQIS 201

Query: 207 G 207
            
Sbjct: 202 N 202

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263

 Score = 74.6 bits (184), Expect = 3e-16
 Identities = 26/184 (14%), Positives = 61/184 (33%), Gaps = 10/184 (5%)

Query: 26  LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYM 85
                      A      +       +T S G  +    D        +     +     
Sbjct: 48  FTGKTHREFPDAFYDISRDRDNRVVILTGS-GDAWMAEIDFPSLGDVTNPREWDK----T 102

Query: 86  FKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTL 145
           +   + ++  ++D+ +P ++AVNG A        L+ D ++   +     M  ++ G+  
Sbjct: 103 YWEGKKVLQNLLDIEVPVISAVNGAALLHS-EYILTTDIILASENTVFQDMPHLNAGIV- 160

Query: 146 PDYCAALF-REKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQ 204
           P     +     +G     R  L   +K+  ++A  + +V       + +  A   + + 
Sbjct: 161 PGDGVHILWPLALGLYRG-RYFLFTQEKLTAQQAYELNVVHEVLPQSKLMERA-WEIART 218

Query: 205 LAGR 208
           LA +
Sbjct: 219 LAKQ 222

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305

 Score = 73.2 bits (180), Expect = 2e-15
 Identities = 42/204 (20%), Positives = 72/204 (35%), Gaps = 16/204 (7%)

Query: 5   EKHGDVFVLTL--TGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGS----AFITTSHGK 58
           E   DV+ + +    + N          +D I                     +  S   
Sbjct: 37  EPQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSD 96

Query: 59  FFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAM---MDLPMPTVAAVNGHAAAAG 115
            F+ G DLA       R G R R+    +     V A    +     ++A V G+A   G
Sbjct: 97  VFNLGGDLA-LFCQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGG 155

Query: 116 FILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAA--LFREKVGSATARRDVLLRAKKI 173
           F  ALS   ++   +  ++ + EV   L  P   A   + + ++ +  A + ++L     
Sbjct: 156 FEAALSCHTIIA-EEGVMMGLPEVLFDL-FPGMGAYSFMCQ-RISAHLA-QKIMLEGNLY 211

Query: 174 KGEEALRMGLVEAAYDSEERVAEA 197
             E+ L MGLV+      + VA  
Sbjct: 212 SAEQLLGMGLVDRVVPRGQGVAAV 235

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333

 Score = 72.9 bits (179), Expect = 3e-15
 Identities = 41/176 (23%), Positives = 65/176 (36%), Gaps = 31/176 (17%)

Query: 57  GKFFSNGFDLAWAQAAGSRTGARE-------------------------RVHYMFKSFRP 91
           G+ F  GFDL+      S  G                              + M   F  
Sbjct: 89  GEGFCAGFDLSAYAEGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVR 148

Query: 92  LVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAA 151
             A++M    PTV  ++G+  A G  +AL  D V+   D   +    + +   +P   A 
Sbjct: 149 GFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAAD-AKIGYPPMRVWG-VPA--AG 204

Query: 152 LFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAG 207
           L+  ++G   A+R +L     I G +A   GL   A D  +  A    RL +++A 
Sbjct: 205 LWAHRLGDQRAKR-LLFTGDCITGAQAAEWGLAVEAPDPADLDART-ERLVERIAA 258

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286

 Score = 72.3 bits (178), Expect = 3e-15
 Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 17/182 (9%)

Query: 31  IDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFR 90
           + ++  A      + +   A +  + GK F  G DL   +A  SR    +    +F    
Sbjct: 55  LAALGEAFGTLAEDESVR-AVVLAASGKAFCAGHDLKEMRAEPSREYYEK----LFARCT 109

Query: 91  PLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCA 150
            ++ A+  LP P +A V+G A AAG  L    D  V         +S +++GL     C+
Sbjct: 110 DVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVA-TRDARFAVSGINVGLF----CS 164

Query: 151 ----ALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLA 206
               AL R  VG   A  ++L+  + +  ++A  +GLV      +    E    +  ++ 
Sbjct: 165 TPGVALSR-NVGRKAA-FEMLVTGEFVSADDAKGLGLVNRVVAPKALDDEI-EAMVSKIV 221

Query: 207 GR 208
            +
Sbjct: 222 AK 223

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287

 Score = 71.5 bits (176), Expect = 6e-15
 Identities = 30/217 (13%), Positives = 65/217 (29%), Gaps = 31/217 (14%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR-----LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKF 59
                V  + L               +G + +  + + +     +++      +++  +F
Sbjct: 14  SSEHGVARIIL--------DNPPVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEF 65

Query: 60  FSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILA 119
           F    D+   +   +              F+ +   +   P  T+  + G A   G    
Sbjct: 66  FLAHVDMRIGEKMDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFV 125

Query: 120 LSHDYVVMRRDKGVLYMSEVDIGLT--------LPDYCAALFREKVGSATARRDVLLRAK 171
            + D      +   L   E  +G+         L          +VG   A  +V+L A 
Sbjct: 126 AAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLR--------GRVGRNRA-LEVVLTAD 176

Query: 172 KIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
               E A   G +  A  ++E       R+ + +A  
Sbjct: 177 LFDAETAASYGWINRALPADELDEYV-DRVARNIAAL 212

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score = 72.7 bits (178), Expect = 6e-15
 Identities = 37/221 (16%), Positives = 73/221 (33%), Gaps = 24/221 (10%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR------------LGPSAIDSILSAIAQAKAEATP-GSAF 51
             +G V  L +    ++ E                      +  AI + + E     +  
Sbjct: 26  SFNGPVATLGI----DIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVV 81

Query: 52  ITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHA 111
           +T+   + F +G ++       +         +  ++   L  +     +  +AAVNG  
Sbjct: 82  LTSLKDRVFCSGANIF-MLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGAC 140

Query: 112 AAAGFILALSHDYVVMRRD-KGVLYMSEVDIGLTLPDYCAA---LFREKVGSATARRDVL 167
           A  G+ LAL+ D + +  D    + + EV +   LP          + KV    A     
Sbjct: 141 AGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRA-DIFC 199

Query: 168 LRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
              + ++GE A    LV+      +           +LA +
Sbjct: 200 TVVEGVRGERAKAWRLVDEVVKPNQFDQAI-QARALELAAQ 239

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290

 Score = 71.5 bits (176), Expect = 7e-15
 Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 9/182 (4%)

Query: 31  IDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERV--HYMFKS 88
           +      +     +     A + T  GK F +G D   A       G  +        + 
Sbjct: 53  MLPFKQMLVDISHDNDVR-AVVITGAGKGFCSGADQKSAGPIPHIGGLTQPTIALRSMEL 111

Query: 89  FRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDY 148
              ++  +  +  P +AA+NG A   G  LAL+ D  V          + ++ GLT  + 
Sbjct: 112 LDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVA-SQDAYFRAAGINNGLTASEL 170

Query: 149 CAA--LFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLA 206
             +  L R  +G++ A  D++L  + +  +EA R+GLV     SE  + E    +G+++A
Sbjct: 171 GLSYLLPR-AIGTSRA-SDIMLTGRDVDADEAERIGLVSRKVASESLLEEC-YAIGERIA 227

Query: 207 GR 208
           G 
Sbjct: 228 GF 229

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250

 Score = 70.6 bits (174), Expect = 7e-15
 Identities = 41/210 (19%), Positives = 81/210 (38%), Gaps = 22/210 (10%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR------LGPSAIDSILSAIAQAKAEATPGSAFITTSHGK 58
           E   +V V+TL                   +   S+  A+A+A A+ +  +  +     +
Sbjct: 5   ENSDEVRVITL--------DHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAER 56

Query: 59  FFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFIL 118
            FS G D    +         E +  +   ++    A++++  PT+AAV+G+A   GF  
Sbjct: 57  SFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQ----AVLNVNKPTIAAVDGYAIGMGFQF 112

Query: 119 ALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEA 178
           AL  D  +M        M E+  G+      AA+     G +T  ++++ + + +     
Sbjct: 113 ALMFDQRLM-ASTANFVMPELKHGIG-CSVGAAILGFTHGFSTM-QEIIYQCQSLDAPRC 169

Query: 179 LRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
           +   LV    +S   +  A +     +A  
Sbjct: 170 VDYRLVNQVVESSALLDAA-ITQAHVMASY 198

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260

 Score = 70.3 bits (173), Expect = 1e-14
 Identities = 32/187 (17%), Positives = 71/187 (37%), Gaps = 24/187 (12%)

Query: 31  IDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFR 90
           +  ++ ++ + + + +     +T+     FS G DL       S          + + + 
Sbjct: 33  LTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLT-EMCGRSPAHYAGYWKAVQELWL 91

Query: 91  PLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRD-KGVLYMSEVDIGL------ 143
                +    +  V+A+NG   A G ++AL+ DY ++  + +  + ++E  +G+      
Sbjct: 92  ----RLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWL 147

Query: 144 --TLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRL 201
             TL +         +G   A    L         EAL++G+V+     E+  + A +  
Sbjct: 148 KDTLENT--------IGHRAA-ERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTA-LSA 197

Query: 202 GKQLAGR 208
             Q    
Sbjct: 198 IAQWMAI 204

>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279

 Score = 70.0 bits (172), Expect = 2e-14
 Identities = 33/178 (18%), Positives = 69/178 (38%), Gaps = 6/178 (3%)

Query: 31  IDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFR 90
           +D + +A  +A  +       +  ++GK FS G DL        +        +  + + 
Sbjct: 49  LDELDAAWTRAAEDNDVS-VIVLRANGKHFSAGHDLRGGGPVPDKLTLEFIYAHESRRYL 107

Query: 91  PLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCA 150
                  ++P P++AAV G   + G +L    D ++   +  +     V + +   +Y  
Sbjct: 108 EYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIA-AEDALFSDPVVLMDIGGVEY-H 165

Query: 151 ALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
               E +G   A +++L   + +  EE  + G+V      +   AE    L  ++A  
Sbjct: 166 GHTWE-LGPRKA-KEILFTGRAMTAEEVAQTGMVNRVVPRDRLDAET-RALAGEIAKM 220

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264

 Score = 69.1 bits (170), Expect = 4e-14
 Identities = 49/201 (24%), Positives = 67/201 (33%), Gaps = 32/201 (15%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR------LGPSAIDSILSAIAQAKAEATPGSAFITTSHGK 58
            +   V  + L         R      L    ++ +  AI +A   +    A + T  G 
Sbjct: 26  TQAEAVLTIEL--------QRPERRNALNSQLVEELTQAIRKAGDGSA--RAIVLTGQGT 75

Query: 59  FFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFIL 118
            F  G DL+                        L  AM   PMP V A+NG A  AG  L
Sbjct: 76  AFCAGADLS----------GDAFAADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQL 125

Query: 119 ALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAA--LFREKVGSATARRDVLLRAKKIKGE 176
           A+  D  V+              GL   D  +   L    VG   A R +LL A+K+  E
Sbjct: 126 AMQCDLRVV-APDAFFQFPTSKYGLA-LDNWSIRRLSS-LVGHGRA-RAMLLSAEKLTAE 181

Query: 177 EALRMGLVEAAYDSEERVAEA 197
            AL  G+        +  A A
Sbjct: 182 IALHTGMANRIGTLADAQAWA 202

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275

 Score = 68.7 bits (169), Expect = 5e-14
 Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 27/175 (15%)

Query: 50  AFITTSHGKFFSNGFDLA------WAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPT 103
           A + +  GK F++G DL                     +  +   ++     +   P P 
Sbjct: 51  AVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPV 110

Query: 104 VAAVNGHAAAAGFILALSHDYVVMR--RDKGVLYMSEVDIGLT--------LPDYCAALF 153
           +AA++G     G  L  + D   +R         + EVD+GL         LP       
Sbjct: 111 IAAIHGGCIGGGVDLISACD---IRYCTQDAFFQVKEVDVGLAADVGTLQRLPKV----- 162

Query: 154 REKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
              +G+ +   ++   A+K+  +EAL  GLV   +  ++ +  A+  L   ++ +
Sbjct: 163 ---IGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSK 214

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253

 Score = 68.3 bits (168), Expect = 5e-14
 Identities = 65/214 (30%), Positives = 91/214 (42%), Gaps = 29/214 (13%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR------LGPSAIDSILSAIAQAKAEATPGSAFITTSHGK 58
            + G V V+ L        +       L P    S+L A+   +A+     A + T  GK
Sbjct: 4   VEKGHVAVVFL--------NDPERRNPLSPEMALSLLQALDDLEADPGVR-AVVLTGRGK 54

Query: 59  FFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFIL 118
            FS G DLA+ +            H    S   L   +   P PTVAAVNG A A G  L
Sbjct: 55  AFSAGADLAFLERVTELGAEENYRH--SLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGL 112

Query: 119 ALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAA----LFREKVGSATARRDVLLRAKKIK 174
           AL+ D VVM  ++  L  +EV IG       A     L R  VG   A +D+LL  + ++
Sbjct: 113 ALACDLVVM-DEEARLGYTEVKIGFV----AALVSVILVR-AVGEKAA-KDLLLTGRLVE 165

Query: 175 GEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
             EA  +GLV       + + EA   L +++A  
Sbjct: 166 AREAKALGLVNRIAPPGKALEEA-KALAEEVAKN 198

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289

 Score = 68.0 bits (167), Expect = 1e-13
 Identities = 39/217 (17%), Positives = 67/217 (30%), Gaps = 33/217 (15%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR-----LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKF 59
              G V   T         +      +GP  +  +++ + +      P      ++   F
Sbjct: 13  RLDGTVLSATF--------NAPPMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADF 64

Query: 60  FSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILA 119
           F    D+       +   A+        S   L   +  LP  T+A + G A  AG    
Sbjct: 65  FFPHVDMT-KVPEYTAEAAKAGGPGD-ASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFL 122

Query: 120 LSHDYVVMRRDKGVLYMSEVDIGLT--------LPDYCAALFREKVGSATARRDVLLRAK 171
           L+ D     R+  +L   EV IG          L           +G   A  + +L + 
Sbjct: 123 LACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRL--------LGRGRA-LEAVLTSS 173

Query: 172 KIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
               + A R G V  A    E        +  +++G 
Sbjct: 174 DFDADLAERYGWVNRAVPDAELDEFV-AGIAARMSGF 209

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265

 Score = 67.5 bits (166), Expect = 1e-13
 Identities = 38/217 (17%), Positives = 71/217 (32%), Gaps = 36/217 (16%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR-----LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKF 59
            K   +  + L        H                +AI   + +       + +   KF
Sbjct: 14  FKEDGIAEIHL--------HINKSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKF 65

Query: 60  FSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILA 119
           FS G D+     +       +   +  ++       +   P   +A + GH    G  +A
Sbjct: 66  FSAGADIN-FLRSADPRFKTQFCLFCNETLD----KIARSPQVYIACLEGHTVGGGLEMA 120

Query: 120 LSHDYVVMRRDKGVLYMSEVDIGLT--------LPDYCAALFREKVGSATARRDVLLRAK 171
           L+ D   M  + G + + EV +G+         L           +G + A  D+ +  +
Sbjct: 121 LACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARL--------IGYSRAL-DMNITGE 171

Query: 172 KIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
            I  +EAL +GLV   +   E          ++LA  
Sbjct: 172 TITPQEALEIGLVNRVFPQAETRERT-REYARKLANS 207

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score = 68.8 bits (169), Expect = 1e-13
 Identities = 51/209 (24%), Positives = 86/209 (41%), Gaps = 15/209 (7%)

Query: 5   EKHGD-VFVLTLTGSS-NVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSN 62
           E  GD V V+TL     N     L    + ++ S   +A +      A + T     FS 
Sbjct: 12  EVGGDGVAVITLINPPVNS----LSFDVLYNLKSNYEEALSRNDV-KAIVITGAKGRFSG 66

Query: 63  GFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSH 122
           GFD++       + G  +     + S   +   +     P+VAA++G A   G  LA++ 
Sbjct: 67  GFDISGFGEM--QKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMAC 124

Query: 123 DYVVMRRDKGVLYMSEVDIGLTLPDY--CAALFREKVGSATARRDVLLRAKKIKGEEALR 180
              +       L + E+ +G+ +P +     L R  VG   A  +++L +K +K EE   
Sbjct: 125 HARIS-APAAQLGLPELQLGV-IPGFGGTQRLPR-LVGLTKA-LEMILTSKPVKAEEGHS 180

Query: 181 MGLVEAAYDSEERVAEASMRLGKQLAGRK 209
           +GL++A     E V  A       +  RK
Sbjct: 181 LGLIDAVVPPAELVTTARRWALDIVGRRK 209

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262

 Score = 65.3 bits (160), Expect = 7e-13
 Identities = 50/207 (24%), Positives = 78/207 (37%), Gaps = 21/207 (10%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR--LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSN 62
           EK G V  + L    N    R  +      ++L+A  +  A+     A +       F  
Sbjct: 16  EKAGPVTTVIL----NRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGD-NGTFCA 70

Query: 63  GFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSH 122
           G DL  A                     P+  + + L  P +AA++GHA A G  LAL  
Sbjct: 71  GADLK-AMGTDRGNELHPH------GPGPMGPSRLRLSKPVIAAISGHAVAGGIELALWC 123

Query: 123 DYVVMRRDKGVLYMSEVDIGLTLPDYCAALFR--EKVGSATARRDVLLRAKKIKGEEALR 180
           D  V+  +  VL +     G+ L D      R    +G + A  D++L  + +   EAL 
Sbjct: 124 DLRVV-EEDAVLGVFCRRWGVPLID--GGTIRLPRLIGHSRA-MDLILTGRPVHANEALD 179

Query: 181 MGLVEAAYDSEERVAEASMRLGKQLAG 207
           +GLV       +    A   L  ++A 
Sbjct: 180 IGLVNRVVARGQAREAA-ETLAAEIAA 205

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score = 65.7 bits (161), Expect = 1e-12
 Identities = 45/196 (22%), Positives = 79/196 (40%), Gaps = 16/196 (8%)

Query: 7   HGDVFVLTL--TGSS-NVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNG 63
              +  L     G S N          ++ +  A+   KA+A+     I +S    F  G
Sbjct: 14  ESGIVELKFDLKGESVNK----FNRLTLNELRQAVDAIKADASV-KGVIVSSGKDVFIVG 68

Query: 64  FDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHD 123
            D+               +         + +   DL +PTVAA+NG A   G  + L+ D
Sbjct: 69  ADITEFVEN--FKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAAD 126

Query: 124 YVVMRRDKGVLYMSEVDIGLTLPDY--CAALFREKVGSATARRDVLLRAKKIKGEEALRM 181
           + VM  D   + + EV +G+  P +     L R  +G   A  + +   K+ + E+AL++
Sbjct: 127 FRVM-ADSAKIGLPEVKLGI-YPGFGGTVRLPR-LIGVDNA-VEWIASGKENRAEDALKV 182

Query: 182 GLVEAAYDSEERVAEA 197
             V+A   +++  A A
Sbjct: 183 SAVDAVVTADKLGAAA 198

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273

 Score = 64.1 bits (157), Expect = 2e-12
 Identities = 35/183 (19%), Positives = 67/183 (36%), Gaps = 7/183 (3%)

Query: 26  LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYM 85
             P  +  ++ A ++A+ +       +T      F +G D       G     +     +
Sbjct: 37  FTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNV 96

Query: 86  FKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTL 145
               R     +  +P P +A V G+A   G +L +  D  +   D  +   +   +G   
Sbjct: 97  LDLQR----LIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAA-DNAIFGQTGPKVGSFD 151

Query: 146 PDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQL 205
             Y +      VG   AR ++    ++   +EAL MGLV      E+   E  ++  K++
Sbjct: 152 AGYGSGYLARIVGHKKAR-EIWYLCRQYNAQEALDMGLVNTVVPLEKVEDET-VQWCKEI 209

Query: 206 AGR 208
              
Sbjct: 210 MKH 212

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score = 63.4 bits (155), Expect = 9e-12
 Identities = 44/210 (20%), Positives = 81/210 (38%), Gaps = 25/210 (11%)

Query: 3   TSEKHGDVFVLTLTGSS-NVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFS 61
                  + ++ L     N     + P+ I  + + + +A ++ T   A +       F 
Sbjct: 24  YLRLPHSLAMIRLCNPPVNA----VSPTVIREVRNGLQKAGSDHTV-KAIVICGANGNFC 78

Query: 62  NGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALS 121
            G D+    A                    LV  +     P +AA+ G A   G  LAL 
Sbjct: 79  AGADIHGFSAFTPGLALGS-----------LVDEIQRYQKPVLAAIQGVALGGGLELALG 127

Query: 122 HDYVVMRRDKGVLYMSEVDIGLTLPDY--CAALFREKVGSATARRDVLLRAKKIKGEEAL 179
             Y +    K  + + EV +G+ LP       L R  VG   A  D++   K +  +EAL
Sbjct: 128 CHYRIA-NAKARVGLPEVTLGI-LPGARGTQLLPR-VVGVPVA-LDLITSGKYLSADEAL 183

Query: 180 RMGLVEAAYDSEERVAEASMRLGKQLAGRK 209
           R+G+++A   S+    E +++  +++  + 
Sbjct: 184 RLGILDAVVKSDPV--EEAIKFAQKIIDKP 211

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265

 Score = 61.8 bits (151), Expect = 1e-11
 Identities = 54/212 (25%), Positives = 80/212 (37%), Gaps = 28/212 (13%)

Query: 5   EKHGDVFVLTLTGSSNVDEHRLGPS---AIDS-ILSAIAQA--KAEATPG-SAFITTSHG 57
            + G V V+ L        +R  P+   A D  +L  +A A  + E      A +    G
Sbjct: 14  RRDGYVLVIGL--------NR--PAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEG 63

Query: 58  KFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFI 117
             F+ G DLA + AA  + GA            P       L  P + AV+G     G  
Sbjct: 64  PLFTAGLDLA-SVAAEIQGGASL---TPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIE 119

Query: 118 LALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFR--EKVGSATARRDVLLRAKKIKG 175
           LAL+ D V+   +       EV+ G+  P    A  R     G   A    +L A     
Sbjct: 120 LALAADIVIA-DETATFAQLEVNRGI-YPFG-GATIRFPRTAGWGNA-MRWMLTADTFDA 175

Query: 176 EEALRMGLVEAAYDSEERVAEASMRLGKQLAG 207
            EA R+G+V+      E V  A + + + +A 
Sbjct: 176 VEAHRIGIVQEIVPVGEHVDTA-IAIAQTIAR 206

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 35/218 (16%), Positives = 74/218 (33%), Gaps = 34/218 (15%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR------LGPSAIDSILSAIAQAKAEATPGSAFITTSHGK 58
           E    +  + L        +R      + P+    ++  +   + +   G   + T  G+
Sbjct: 14  EIEDGIAFVIL--------NRPEKRNAMSPTLNREMIDVLETLEQDPAAG-VLVLTGAGE 64

Query: 59  FFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFIL 118
            ++ G DL              +     ++ +     +     PT+A VNG     GF  
Sbjct: 65  AWTAGMDLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSP 124

Query: 119 ALSHDYVVMRRDKGVLYMSEVDIGLT--------LPDYCAALFREKVGSATARRDVLLRA 170
            ++ D  +   D+    +SE++ G+         + D         VG   +    ++  
Sbjct: 125 LVACDLAIC-ADEATFGLSEINWGIPPGNLVSKAMADT--------VGHRQS-LMYIMTG 174

Query: 171 KKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
           K   G++A  MGLV  +    +      + L + L  +
Sbjct: 175 KTFGGQKAAEMGLVNESVPLAQLREVT-IELARNLLEK 211

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278

 Score = 60.3 bits (147), Expect = 5e-11
 Identities = 44/211 (20%), Positives = 75/211 (35%), Gaps = 24/211 (11%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR------LGPSAIDSILSAIAQAKAEATPGSAFITTSHGK 58
           E+ G   ++T+        +R      L    +  ++ A  +   +       +T + G 
Sbjct: 25  EQRGHTLIVTM--------NRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGA-GG 75

Query: 59  FFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFIL 118
           +F  G DL  A        + +   Y       L      L  P +AAV G A A G  +
Sbjct: 76  YFCAGMDLK-AATKKPPGDSFKDGSYDPSRIDAL-LKGRRLKKPLIAAVEGPAIAGGTEI 133

Query: 119 ALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFR--EKVGSATARRDVLLRAKKIKGE 176
               D  V   +     +SE    L  P    +  R   ++    A  D+LL  + I   
Sbjct: 134 LQGTDIRVA-AESAKFGISEAKWSL-YPM-GGSAVRLVRQIPYTVA-CDLLLTGRHITAA 189

Query: 177 EALRMGLVEAAYDSEERVAEASMRLGKQLAG 207
           EA  MGLV       + + +A + + + +A 
Sbjct: 190 EAKEMGLVGHVVPDGQALTKA-LEIAEIIAA 219

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267

 Score = 59.8 bits (146), Expect = 6e-11
 Identities = 47/211 (22%), Positives = 84/211 (39%), Gaps = 27/211 (12%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR------LGPSAIDSILSAIAQAKAEATPGSAFITTSHGK 58
           E+ G+V V+T+        +R      +  +    +  A+ +A+ +    +  +T +  K
Sbjct: 14  ERRGNVMVITI--------NRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDK 65

Query: 59  FFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFIL 118
            F  G DL  A A        +   + F  +         +  PT+AAVNG A   G  L
Sbjct: 66  SFCAGADLK-AIARRENLYHPDHPEWGFAGYV-----RHFIDKPTIAAVNGTALGGGTEL 119

Query: 119 ALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFR--EKVGSATARRDVLLRAKKIKGE 176
           AL+ D VV   ++    + EV  GL +      +FR  E++    A   +LL  + +   
Sbjct: 120 ALASDLVVA-DERAQFGLPEVKRGL-IAAA-GGVFRIAEQLPRKVA-MRLLLTGEPLSAA 175

Query: 177 EALRMGLVEAAYDSEERVAEASMRLGKQLAG 207
            A   GL+    ++   +  A + L   +  
Sbjct: 176 AARDWGLINEVVEAGSVLDAA-LALASAITV 205

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265

 Score = 59.8 bits (146), Expect = 6e-11
 Identities = 40/191 (20%), Positives = 78/191 (40%), Gaps = 24/191 (12%)

Query: 26  LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYM 85
           L  + ++ + + + Q   EA      +T +  K F  G DL   +A  +    R  V  +
Sbjct: 33  LSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLK-ERAGMNEEQVRHAVSMI 91

Query: 86  FKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLT- 144
             +       +  LP P +AA+NG A   G  L+L+ D+ +   +   L ++E  + +  
Sbjct: 92  RTTME----MVEQLPQPVIAAINGIALGGGTELSLACDFRIA-AESASLGLTETTLAIIP 146

Query: 145 -------LPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEA 197
                  LP          +G   A ++++   ++I  +EA   GLVE          +A
Sbjct: 147 GAGGTQRLPRL--------IGVGRA-KELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKA 197

Query: 198 SMRLGKQLAGR 208
            + + +++A  
Sbjct: 198 -IEIAEKIASN 207

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258

 Score = 59.1 bits (144), Expect = 1e-10
 Identities = 49/212 (23%), Positives = 76/212 (35%), Gaps = 28/212 (13%)

Query: 5   EKHGDVFVLTLTGSSNVDEHRLGPS---AIDS-ILSAIAQA--KAEATPG-SAFITTSHG 57
           E+ G +F++ L         R       A DS +L+ +A A  + E +      +  +HG
Sbjct: 17  EQRGHLFLIGL--------DR--AGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHG 66

Query: 58  KFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFI 117
           + F+ G DL       +   A     Y      P          P V AV G    AG  
Sbjct: 67  EHFTAGLDLM----ELAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIE 122

Query: 118 LALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFR--EKVGSATARRDVLLRAKKIKG 175
           L L+ D  V           EV  G+       +  R     G   A    +L   +   
Sbjct: 123 LMLNADIAVA-ARGTRFAHLEVLRGIPPLG--GSTVRFPRAAGWTDA-MRYILTGDEFDA 178

Query: 176 EEALRMGLVEAAYDSEERVAEASMRLGKQLAG 207
           +EALRM L+    +  E +A A +   +++A 
Sbjct: 179 DEALRMRLLTEVVEPGEELARA-LEYAERIAR 209

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256

 Score = 58.7 bits (143), Expect = 1e-10
 Identities = 43/212 (20%), Positives = 74/212 (34%), Gaps = 36/212 (16%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR------LGPSAIDSILSAIAQAKAEATPGSAFITTSHGK 58
           +    V  LTL        +R      L      +   A++ A+ +       +T +   
Sbjct: 14  DTTDRVRTLTL--------NRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGA-DP 64

Query: 59  FFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFIL 118
            F  G DL                         +     D+  P + A+NG A   G  L
Sbjct: 65  VFCAGLDLKELGDTTEL--------------PDISPKWPDMTKPVIGAINGAAVTGGLEL 110

Query: 119 ALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAA--LFREKVGSATARRDVLLRAKKIKGE 176
           AL  D ++   +      +   +GL +P +  +  L + KVG   A R + L    +  +
Sbjct: 111 ALYCDILIA-SENAKFADTHARVGL-MPTWGLSVRLPQ-KVGVGLA-RRMSLTGDYLSAQ 166

Query: 177 EALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
           +ALR GLV      ++ +  A  R+   + G 
Sbjct: 167 DALRAGLVTEVVAHDDLLTAA-RRVAASIVGN 197

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 36/184 (19%), Positives = 70/184 (38%), Gaps = 8/184 (4%)

Query: 26  LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAW-AQAAGSRTGARERVHY 84
             P  +  ++ A+A A+ +   G   +T +  K F +G D        G +  +      
Sbjct: 52  FRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLN 111

Query: 85  MFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLT 144
           +    R     +   P P VA V G++   G +L +  D  +   D  +   +   +G  
Sbjct: 112 VLDFQR----QIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAA-DNAIFGQTGPKVGSF 166

Query: 145 LPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQ 204
              + A+     VG   AR ++    ++   ++AL MGLV       +   E  +R  ++
Sbjct: 167 DGGWGASYMARIVGQKKAR-EIWFLCRQYDAKQALDMGLVNTVVPLADLEKET-VRWCRE 224

Query: 205 LAGR 208
           +   
Sbjct: 225 MLQN 228

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274

 Score = 58.7 bits (143), Expect = 1e-10
 Identities = 37/219 (16%), Positives = 78/219 (35%), Gaps = 35/219 (15%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR------LGPSAIDSILSAIAQAKAEATPGSAFITTSHGK 58
           E  G    +TL        +R      L P  I  + +A  +A+ +       +T + G+
Sbjct: 16  EVDGHTATITL--------NRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGT-GR 66

Query: 59  FFSNGFDLAWAQAAGSRTGARERV--HYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGF 116
            F +G D+      G     R  +  +  +++ +        +  P + AVNG    AG 
Sbjct: 67  AFCSGADVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGM 126

Query: 117 ILALSHDYVVMRRDKGVLYMSEVDIGLT-------LPDYCAALFREKVGSATARRDVLL- 168
               + D V+   ++   +   V IGL        +           +  + A R  L+ 
Sbjct: 127 DWVTTTDIVIA-SEQATFFDPHVSIGLVAGRELVRVS--------RVLPRSIALRMALMG 177

Query: 169 RAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAG 207
           + +++  + A  +GL+    + +  +  A   +   +  
Sbjct: 178 KHERMSAQRAYELGLISEIVEHDRLLERA-HEIADIVNS 215

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 50/182 (27%), Positives = 76/182 (41%), Gaps = 17/182 (9%)

Query: 31  IDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFR 90
           + S+ S I             I ++ G  FS+G DL        R    E    +F++  
Sbjct: 62  LKSLQSDILHDADSNDLK-VIIISAEGPVFSSGHDLKELTEEQGRDYHAE----VFQTCS 116

Query: 91  PLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCA 150
            ++  + + P+P +A VNG A AAG  L  S D  V   DK       V++GL     C+
Sbjct: 117 KVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVA-SDKSSFATPGVNVGLF----CS 171

Query: 151 ----ALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLA 206
               AL R  V    A  ++L   + I  +EAL  GL+       E   E  MR+ +++A
Sbjct: 172 TPGVALAR-AVPRKVA-LEMLFTGEPISAQEALLHGLLSKVVPEAELQEET-MRIARKIA 228

Query: 207 GR 208
             
Sbjct: 229 SL 230

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272

 Score = 58.3 bits (142), Expect = 2e-10
 Identities = 46/219 (21%), Positives = 85/219 (38%), Gaps = 38/219 (17%)

Query: 4   SEKHGDVFVLTLTGSSNVDEHR------LGPSAIDSILSAIAQAKAEATPGSAFITTSHG 57
            E++  + VL +        +R      L  + I  +  A+   K++    +  I +   
Sbjct: 16  EEENRGIVVLGI--------NRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVP 67

Query: 58  KFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFI 117
             F  G DL   +A  S +     V  +          + +LP+PT+AA++G A   G  
Sbjct: 68  GIFCAGADLK-ERAKMSSSEVGPFVSKIRAVIN----DIANLPVPTIAAIDGLALGGGLE 122

Query: 118 LALSHDYVVMRRDKGVLYMSEVDIGLT--------LPDYCAALFREKVGSATARRDVLLR 169
           LAL+ D  V       + + E  + +         LP       R  +G + A ++++  
Sbjct: 123 LALACDIRVA-ASSAKMGLVETKLAIIPGGGGTQRLP-------R-AIGMSLA-KELIFS 172

Query: 170 AKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
           A+ + G+EA  +GL+    +  +    A  R    LA  
Sbjct: 173 ARVLDGKEAKAVGLISHVLEQNQEGDAA-YRKALDLARE 210

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275

 Score = 58.3 bits (142), Expect = 2e-10
 Identities = 38/217 (17%), Positives = 68/217 (31%), Gaps = 39/217 (17%)

Query: 5   EKHGDVFVLTLTGSSNVDEHRLGPSAI----DSILSAIAQAKAEATPG-SAFITTSHGKF 59
           +  G V  + L        +R  P       D +++A+     +      A +    G  
Sbjct: 21  DTVGPVLTIGL--------NR--PKKRNALNDGLMAALKDCLTDIPDQIRAVVIHGIGDH 70

Query: 60  FSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILA 119
           FS G DL+        T          + F      +    +P +AA+ G     G  LA
Sbjct: 71  FSAGLDLS-ELRERDATEGLVHSQTWHRVFD----KIQYCRVPVIAALKGAVIGGGLELA 125

Query: 120 LSHDYVVMRRDKGVLYMSEVDIGLT--------LPDYCAALFREKVGSATARRDVLLRAK 171
            +    V         + E   G+         LP          +G A    D++L  +
Sbjct: 126 CAAHIRVAE-ASAYYALPEGSRGIFVGGGGSVRLP--------RLIGVARMA-DMMLTGR 175

Query: 172 KIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
                E +  G  +   ++     +A + LG ++A  
Sbjct: 176 VYSAAEGVVHGFSQYLIENGSAYDKA-LELGNRVAQN 211

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275

 Score = 57.6 bits (140), Expect = 4e-10
 Identities = 34/188 (18%), Positives = 68/188 (36%), Gaps = 12/188 (6%)

Query: 26  LGPSAIDSILSAIAQAKAEATPGSAFIT-----TSHGKFFSNGFDLAWAQAAGSRTGARE 80
             P  +  +  A   A+ +   G   +T     +     F +G D    Q+     G  +
Sbjct: 34  FRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGD----QSVRGEGGYID 89

Query: 81  RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVD 140
                  +   L   +  +P   +A V G+A   G +L L  D  +   D  +   +   
Sbjct: 90  DQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAA-DNAIFGQTGPK 148

Query: 141 IGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMR 200
           +G     + ++     VG   AR ++    ++   +EA RMG+V      +    E  ++
Sbjct: 149 VGSFDGGFGSSYLARIVGQKKAR-EIWYLCRQYSAQEAERMGMVNTVVPVDRLEEEG-IQ 206

Query: 201 LGKQLAGR 208
             K++  +
Sbjct: 207 WAKEILSK 214

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277

 Score = 57.2 bits (139), Expect = 5e-10
 Identities = 45/217 (20%), Positives = 78/217 (35%), Gaps = 38/217 (17%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR-----LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKF 59
                +  L +         R     +       I++A  +       G A +     + 
Sbjct: 29  VADQGLATLVV--------SRPPTNAMTRQVYREIVAAADELGRRDDIG-AVVLFGGHEI 79

Query: 60  FSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILA 119
           FS G D+       +   A        ++      A+  +P PTVAAV G+A  AG  LA
Sbjct: 80  FSAGDDMP-ELRTLNAPEADTAARVRLEAID----AVAAIPKPTVAAVTGYALGAGLTLA 134

Query: 120 LSHDYVVMRRDKGVLYMSEVDIGLT--------LPDYCAALFREKVGSATARRDVLLRAK 171
           L+ D+ V   D      +E+  GL         L        R  VGS+ A ++++   +
Sbjct: 135 LAADWRVS-GDNVKFGATEILAGLIPGGGGMGRLT-------R-VVGSSRA-KELVFSGR 184

Query: 172 KIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
               EEAL +GL++     ++    A +   ++    
Sbjct: 185 FFDAEEALALGLIDDMVAPDDVYDSA-VAWARRYLEC 220

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265

 Score = 56.4 bits (137), Expect = 8e-10
 Identities = 39/217 (17%), Positives = 71/217 (32%), Gaps = 38/217 (17%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR------LGPSAIDSILSAIAQAKAEATPGSAFITTSHGK 58
           E+ G V +LT+        +R      L  + +    +A  +   +    +A +T + G 
Sbjct: 14  ERDGPVVILTM--------NRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGA-GS 64

Query: 59  FFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFIL 118
            +  G DL+        +        + K           L  P +AAVNG     G  +
Sbjct: 65  AYCVGGDLSDGWMVRDGSAPPLDPATIGKGLL----LSHTLTKPLIAAVNGACLGGGCEM 120

Query: 119 ALSHDYVVMRRDKGVLYMSEVDIGLT--------LPDYCAALFREKVGSATARRDVLLRA 170
               D  V   +     + EV  GL         L          ++    A  +++L  
Sbjct: 121 LQQTDIRVS-DEHATFGLPEVQRGLVPGAGSMVRLK--------RQIPYTKA-MEMILTG 170

Query: 171 KKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAG 207
           + +   EA   GLV     +   + +A   L  ++  
Sbjct: 171 EPLTAFEAYHFGLVGHVVPAGTALDKA-RSLADRIVR 206

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261

 Score = 56.4 bits (137), Expect = 9e-10
 Identities = 48/217 (22%), Positives = 81/217 (37%), Gaps = 37/217 (17%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR-----LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKF 59
                + V TL        +      +    +  +   I Q + +       I    G+F
Sbjct: 11  RVEDHIAVATL--------NHAPANAMSSQVMHDVTELIDQVEKDDNIRVVVIHGE-GRF 61

Query: 60  FSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILA 119
           FS G D+    +      A E       +F      +     P +AA++G A   G   A
Sbjct: 62  FSAGADIKEFTSVTEAKQATELAQLGQVTFE----RVEKCSKPVIAAIHGAALGGGLEFA 117

Query: 120 LSHDYVVMRRDKGVLYMSEVDIGLT--------LPDYCAALFREKVGSATARRDVLLRAK 171
           +S        +   L + E+ +GL         LP Y        VG A A  +++L + 
Sbjct: 118 MSCHMRFAT-ESAKLGLPELTLGLIPGFAGTQRLPRY--------VGKAKAC-EMMLTST 167

Query: 172 KIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
            I G EAL+ GLV   +  E  + +  +++ KQ+AG+
Sbjct: 168 PITGAEALKWGLVNGVFAEETFLDDT-LKVAKQIAGK 203

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261

 Score = 55.6 bits (135), Expect = 2e-09
 Identities = 34/219 (15%), Positives = 70/219 (31%), Gaps = 41/219 (18%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR------LGPSAIDSILSAIAQAKAEATPGSAFITTSHG- 57
                V V+          +       L    ID ++ A++            +    G 
Sbjct: 9   VTINKVAVIEF--------NYGRKLNALSKVFIDDLMQALSDLNRPEI-RCIILRAPSGS 59

Query: 58  KFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFI 117
           K FS G D+     +G R              R +   +   P P ++ V G      F 
Sbjct: 60  KVFSAGHDIH-ELPSGGRDPL-----SYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFE 113

Query: 118 LALSHDYVVMRRDKGVLYMSEVDIGLT--------LPDYCAALFREKVGSATARRDVLLR 169
           + +S D ++         M+ V++G+         L            G     ++++  
Sbjct: 114 MIMSSDLIIA-ASTSTFSMTPVNLGVPYNLVGIHNLTRD--------AGFHIV-KELIFT 163

Query: 170 AKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
           A  I  + AL +G++    + EE      +++   ++ +
Sbjct: 164 ASPITAQRALAVGILNHVVEVEELEDFT-LQMAHHISEK 201

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265

 Score = 54.5 bits (132), Expect = 4e-09
 Identities = 46/211 (21%), Positives = 80/211 (37%), Gaps = 32/211 (15%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR------LGPSAIDSILSAIAQAKAEATPGSAFITTSHGK 58
           E+   + ++T+        +R      +  +   ++  A+ +  A+A      +T + G 
Sbjct: 20  EQRDRILIITI--------NRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGA-GG 70

Query: 59  FFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFIL 118
            F  G DL  A A G       R          L         P +AAV G+A A G  L
Sbjct: 71  SFCAGMDLK-AFARGENVVVEGRG---------LGFTERPPAKPLIAAVEGYALAGGTEL 120

Query: 119 ALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFR--EKVGSATARRDVLLRAKKIKGE 176
           AL+ D +V         + EV  GL +      L R  E++  A A  ++ L    +  E
Sbjct: 121 ALATDLIVA-ARDSAFGIPEVKRGL-VAGG-GGLLRLPERIPYAIA-MELALTGDNLSAE 176

Query: 177 EALRMGLVEAAYDSEERVAEASMRLGKQLAG 207
            A  +G+V    +    +  A + L +++  
Sbjct: 177 RAHALGMVNVLAEPGAALDAA-IALAEKITA 206

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256

 Score = 54.0 bits (131), Expect = 5e-09
 Identities = 45/211 (21%), Positives = 77/211 (36%), Gaps = 33/211 (15%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR------LGPSAIDSILSAIAQAKAEATPGSAFITTSHGK 58
           E+   V ++T+        +R      +  +    + +A  Q  + A    A IT + G 
Sbjct: 12  EQRDRVLLITI--------NRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGA-GG 62

Query: 59  FFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFIL 118
            F  G DL  A  +G    +   + +            +    P +AAV G A A G  L
Sbjct: 63  NFCAGMDLK-AFVSGEAVLSERGLGF----------TNVPPRKPIIAAVEGFALAGGTEL 111

Query: 119 ALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFR--EKVGSATARRDVLLRAKKIKGE 176
            LS D VV         + EV  GL +      L R   ++    A  ++ L  +    E
Sbjct: 112 VLSCDLVVA-GRSAKFGIPEVKRGL-VAG-AGGLLRLPNRIPYQVA-MELALTGESFTAE 167

Query: 177 EALRMGLVEAAYDSEERVAEASMRLGKQLAG 207
           +A + G +    D  + +  A + L  ++  
Sbjct: 168 DAAKYGFINRLVDDGQALDTA-LELAAKITA 197

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258

 Score = 54.1 bits (131), Expect = 6e-09
 Identities = 45/218 (20%), Positives = 76/218 (34%), Gaps = 41/218 (18%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR------LGPSAIDSILSAIAQAKAEATPGSAFITTSHGK 58
            + G V ++ L         R      L    +  I++A+             + T  G+
Sbjct: 10  RQEGAVGIIEL--------ARPDVLNALSRQMVAEIVAAVEAFDRNEKVR-VIVLTGRGR 60

Query: 59  FFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFIL 118
            F+ G D+                   +         +  +  P +AAVNG A   GF L
Sbjct: 61  AFAAGADIQEMAKDDPIRLEWLNQFADWD-------RLSIVKTPMIAAVNGLALGGGFEL 113

Query: 119 ALSHDYVVMRRDKGVLYMSEVDIGLT--------LPDYCAALFREKVGSATARRDVLLRA 170
           ALS D +V           EV++G+         L         + +G   A  + L   
Sbjct: 114 ALSCDLIVA-SSAAEFGFPEVNLGVMPGAGGTQRLT--------KLIGPKRA-LEWLWTG 163

Query: 171 KKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
            ++  +EA ++G+V      E  + E  MRL  +LA +
Sbjct: 164 ARMSAKEAEQLGIVNRVVSPELLMEET-MRLAGRLAEQ 200

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 44/218 (20%), Positives = 77/218 (35%), Gaps = 41/218 (18%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR------LGPSAIDSILSAIAQAKAEATPGSAFITTSHGK 58
           E+   V ++TL        +R      L    ++ + SA  +   +   G A I T   K
Sbjct: 30  ERDQRVGIITL--------NRPQALNALNSQVMNEVTSAATELDDDPDIG-AIIITGSAK 80

Query: 59  FFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFIL 118
            F+ G D+                   +         +  +  PT+AAV G+A   G  L
Sbjct: 81  AFAAGADIKEMADLTFADAFTADFFATWG-------KLAAVRTPTIAAVAGYALGGGCEL 133

Query: 119 ALSHDYVVMRRDKGVLYMSEVDIGLT--------LPDYCAALFREKVGSATARRDVLLRA 170
           A+  D ++   D       E+ +G+         L           +G A A  D++L  
Sbjct: 134 AMMCDVLIA-ADTAKFGQPEIKLGVLPGMGGSQRLT--------RAIGKAKA-MDLILTG 183

Query: 171 KKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
           + +   EA R GLV     +++ + EA       ++  
Sbjct: 184 RTMDAAEAERSGLVSRVVPADDLLTEA-RATATTISQM 220

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440

 Score = 52.2 bits (125), Expect = 4e-08
 Identities = 33/169 (19%), Positives = 53/169 (31%), Gaps = 29/169 (17%)

Query: 57  GKFFSNGFDLA-----------WAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVA 105
            + FS G +L            +          +     +    RP       +  P VA
Sbjct: 230 KRVFSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVA 289

Query: 106 AVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLT-------LPDYCAALFREKVG 158
           AV+G A   G  L L  D V+         +     G+        L  +         G
Sbjct: 290 AVDGFAIGGGAQLLLVFDRVLA-SSDAYFSLPAAKEGIIPGAANLRLGRF--------AG 340

Query: 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAG 207
              + R V+L  ++I  +E     LV+   + +E  A    R   +L G
Sbjct: 341 PRVS-RQVILEGRRIWAKEPEARLLVDEVVEPDELDAAI-ERSLTRLDG 387

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263

 Score = 51.4 bits (124), Expect = 5e-08
 Identities = 48/220 (21%), Positives = 80/220 (36%), Gaps = 41/220 (18%)

Query: 3   TSEKHGDVFVLTLTGSSNVDEHR------LGPSAIDSILSAIAQAKAEATPGSAFITTSH 56
           TS     V ++ L         R      L  +    +L A     A+   G A + T  
Sbjct: 13  TSRPVAGVGLIRL--------DRPDALNALNQTLEAEVLDAARDFDADLEIG-AIVVTGS 63

Query: 57  GKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGF 116
            + F+ G D+A              +   +        ++  +  P VAAV G+A   G 
Sbjct: 64  ERAFAAGADIAEMVTLTPHQARERNLLSGWD-------SLTQVRKPIVAAVAGYALGGGC 116

Query: 117 ILALSHDYVVMRRDKGVLYMSEVDIGLT--------LPDYCAALFREKVGSATARRDVLL 168
            LA+  D V+   D       E+ +G+         L           VG A A  D+ L
Sbjct: 117 ELAMLCDLVIA-ADTARFGQPEITLGILPGLGGTQRLT--------RAVGKAKA-MDLCL 166

Query: 169 RAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208
             + +  EEA R+GLV     + + + EA + + +++A  
Sbjct: 167 TGRSLTAEEAERVGLVSRIVPAADLLDEA-LAVAQRIARM 205

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260

 Score = 49.8 bits (120), Expect = 2e-07
 Identities = 40/186 (21%), Positives = 74/186 (39%), Gaps = 27/186 (14%)

Query: 31  IDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFR 90
           I+ +  A+   + +   G A + T   K F+ G D+   Q    +     +    +    
Sbjct: 36  IEELNQALETFEEDPAVG-AIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWD--- 91

Query: 91  PLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLT------ 144
                +  +  P +AAVNG+A   G  LA+  D +    +K      E+ +G        
Sbjct: 92  ----HITRIKKPVIAAVNGYALGGGCELAMMCDIIYAG-EKAQFGQPEILLGTIPGAGGT 146

Query: 145 --LPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLG 202
             L        R  VG + A  +++L   +I  ++A + GLV   +  E  V EA ++  
Sbjct: 147 QRLT-------R-AVGKSLAM-EMVLTGDRISAQDAKQAGLVSKIFPVETLVEEA-IQCA 196

Query: 203 KQLAGR 208
           +++A  
Sbjct: 197 EKIANN 202

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	243
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	100.0
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	100.0
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	100.0
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	100.0
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	100.0
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	100.0
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	100.0
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	100.0
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	100.0
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	100.0
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	100.0
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	100.0
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	100.0
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	100.0
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	100.0
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	100.0
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	100.0
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	100.0
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	100.0
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	100.0
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	100.0
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	100.0
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	100.0
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	100.0
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	100.0
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	100.0
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	100.0
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	100.0
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	100.0
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	100.0
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	100.0
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	100.0
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	100.0
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	100.0
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	100.0
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	100.0
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	100.0
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	100.0
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	100.0
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	100.0
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	100.0
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	100.0
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	100.0
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	100.0
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	100.0
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	100.0
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	100.0
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	100.0
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	100.0
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	100.0
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	100.0
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	100.0
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	100.0
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	100.0
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	100.0
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	100.0
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	100.0
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	100.0
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	100.0
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	100.0
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	100.0
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	100.0
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	100.0
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	100.0
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	100.0
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	100.0
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	100.0
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.88
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.86
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.86
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	99.69
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	99.69
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	99.61
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	99.57
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	99.38
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	98.99
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	98.99
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	98.98
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	98.97
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	98.94
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	98.93
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	98.47
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	98.44
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	98.31
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	98.22
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	98.18
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	98.05
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	98.0
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	97.93
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	97.91
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	97.9
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	97.78
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	97.76
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	97.63
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	97.42
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	97.39
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	97.38
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	97.11
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	97.02
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	96.66
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	96.49
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	96.28
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	96.07
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	95.95
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	94.29
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	93.52

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=100.00  E-value=1.5e-54  Score=363.96  Aligned_cols=216  Identities=29%  Similarity=0.393  Sum_probs=197.5

Q ss_pred             CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      ||.+|++|+|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +||+||.|+.||+|.|++++....      .
T Consensus         1 lvl~E~~dgVa~itlnrP~--~~NAl~~~m~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~------~   71 (254)
T 3hrx_A            1 MVLKERQDGVLVLTLNRPE--KLNAITGELLDALYAALKEGEEDREVR-ALLLTGAGRAFSAGQDLTEFGDRK------P   71 (254)
T ss_dssp             CEEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCSBCCBCGGGTTTSC------C
T ss_pred             CeEEEEECCEEEEEEcCCC--cCCCCCHHHHHHHHHHHHHHHhCCCeE-EEEEeCCCCCcccCccHHHhcccc------h
Confidence            6899999999999999998  999999999999999999999999999 999999999999999999886531      1


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                      ....+.+.+++++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        72 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~lGl-~p~~g~~~~L~r~vG-  148 (254)
T 3hrx_A           72 DYEAHLRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVG-ASFTTAFVRIGL-VPDSGLSFLLPRLVG-  148 (254)
T ss_dssp             CHHHHTHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTCSEEEEETT-CEEECCGGGGTC-CCCTTHHHHHHHHHC-
T ss_pred             hhHHHHHHHHHHHHHHHhCCCCEEEEECCEeeehhhhhhhccceeeEcCC-CEEEchhhCcCc-CCcccHHHHHHHHhC-
Confidence            22345567888999999999999999999999999999999999999988 999999999999 57765 579999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~  231 (243)
                      ..+|+++++||++++|+||+++||||+|||+ +++.+++.++++++++.+  +.++..+|+.+++.....++
T Consensus       149 ~~~A~~llltg~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~~~~~~~  217 (254)
T 3hrx_A          149 LAKAQELLLLSPRLSAEEALALGLVHRVVPA-EKLMEEALSLAKELAQGP--TRAYALTKKLLLETYRLSLT  217 (254)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHGGGSCHH
T ss_pred             cchHHHHhhcCcccCHHHHHHCCCeEEecCc-HHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHHcCCHH
Confidence            9999999999999999999999999999998 889999999999999998  99999999998776554333

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=1e-53  Score=362.19  Aligned_cols=220  Identities=24%  Similarity=0.326  Sum_probs=194.2

Q ss_pred             CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      +|.++.++||++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|+.||+|.|++++..... ....+
T Consensus        16 ~il~~~~~gVa~itlnRP~--~~NAl~~~m~~~L~~al~~~~~d~~vr-~vVltg~G~~FcaG~Dl~~~~~~~~-~~~~~   91 (274)
T 4fzw_C           16 FILSHVEKGVMTLTLNRPE--RLNSFNDEMHAQLAECLKQVERDDTIR-CLLLTGAGRGFCAGQDLNDRNVDPT-GPAPD   91 (274)
T ss_dssp             CEEEEEETTEEEEEECCTT--TTSCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSCSBCCBCCC----------CCC
T ss_pred             cEEEEEECCEEEEEEcCcC--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCceeCCcChHhhhcccc-ccchH
Confidence            5788999999999999998  899999999999999999999999999 9999999999999999998754322 11123


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                      ....+.+.+++++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        92 ~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG-  168 (274)
T 4fzw_C           92 LGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARS-AKFVMAFSKLGL-IPDCGGTWLLPRVAG-  168 (274)
T ss_dssp             HHHHHHHTHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETT-CEEECCGGGTTC-CCTTTHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEECCceeecCceeeeccceEEECCC-CEEECcccCccc-CCCccHHHHHHHHhh-
Confidence            34456677888999999999999999999999999999999999999987 899999999999 67766 579999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHH
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVL  230 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l  230 (243)
                      ..+|++++++|++++|+||+++||||+|||+ +++.+++.++|++++..+  +.++..+|+.+++.....+
T Consensus       169 ~~~A~~llltg~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l  236 (274)
T 4fzw_C          169 RARAMGLALLGNQLSAEQAHEWGMIWQVVDD-ETLADTAQQLARHLATQP--TFGLGLIKQAINSAETNTL  236 (274)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHTTSSSEEECG-GGHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHTSSCH
T ss_pred             HHHHHHHHHhCCcCCHHHHHHCCCceEEeCh-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhhCCH
Confidence            9999999999999999999999999999998 899999999999999998  9999999999987654433

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=1.9e-53  Score=357.67  Aligned_cols=213  Identities=22%  Similarity=0.323  Sum_probs=193.8

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|++||+|.|++++...       ..
T Consensus         7 l~ve~~~~Va~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~-------~~   76 (258)
T 4fzw_A            7 LIVSRQQRVLLLTLNRPA--ARNALNNALLMQLVNELEAAATDTSIS-VCVITGNARFFAAGADLNEMAEK-------DL   76 (258)
T ss_dssp             EEEEEETTEEEEEEECGG--GTTCBCHHHHHHHHHHHHHHHTCTTCC-EEEEECCSSEEEECBCHHHHHTC-------CH
T ss_pred             EEEEEECCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhhCCCeE-EEEEeCCCCceeCCCchhhhccc-------hh
Confidence            568899999999999998  899999999999999999999999999 99999999999999999988652       11


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+.+...+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus        77 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG-~  153 (258)
T 4fzw_A           77 AATLNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGEN-ARFGLPEITLGI-MPGAGGTQRLIRSVG-K  153 (258)
T ss_dssp             HHHHTCSHHHHHHHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCGGGGTC-CCCSSHHHHHHHHHC-H
T ss_pred             hhHHHhHHHHHHHHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCC-CEEECcccCCCc-CCCchHHHHHHHHhC-H
Confidence            2233455678899999999999999999999999999999999999987 899999999999 56664 679999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVL  230 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l  230 (243)
                      .++++++++|++++|+||+++||||+|||+ +++++++.++++++++.+  +.+++.+|+.+++.....+
T Consensus       154 ~~A~~llltg~~i~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~~~l  220 (258)
T 4fzw_A          154 SLASKMVLSGESITAQQAQQAGLVSDVFPS-DLTLEYALQLASKMARHS--PLALQAAKQALRQSQEVAL  220 (258)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSCSEEECT-TTHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHHHcCCcCcHHHHHHCCCeeEEeCc-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhcCCH
Confidence            999999999999999999999999999998 889999999999999998  9999999999987654433

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=100.00  E-value=1.5e-51  Score=345.02  Aligned_cols=218  Identities=20%  Similarity=0.298  Sum_probs=196.7

Q ss_pred             CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec-CCCccccCCChhhHHHcCCCcchH
Q 026137            1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS-HGKFFSNGFDLAWAQAAGSRTGAR   79 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g-~g~~F~~G~D~~~~~~~~~~~~~~   79 (243)
                      ||.++++++|++||||||+  +.|++|.+|+.+|.++++.++.|++++ +||||| .|+.||+|.|++++.....    .
T Consensus         1 mv~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVltg~~g~~F~aG~Dl~~~~~~~~----~   73 (250)
T 2a7k_A            1 MVFEENSDEVRVITLDHPN--KHNPFSRTLETSVKDALARANADDSVR-AVVVYGGAERSFSAGGDFNEVKQLSR----S   73 (250)
T ss_dssp             CEEEEEETTEEEEEECCSS--TTCBCCHHHHHHHHHHHHHHHHCTTCC-EEEEECCTTSCSBCBSCHHHHHTC-C----H
T ss_pred             CeEEEeeCCEEEEEecCCC--ccCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEECCCCCCccCCcCHHHHhhcCc----h
Confidence            6889999999999999998  899999999999999999999999999 999999 8999999999999865211    2


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCC
Q 026137           80 ERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGS  159 (243)
Q Consensus        80 ~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~  159 (243)
                      .....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+.++++++| 
T Consensus        74 ~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~l~~~vG-  150 (250)
T 2a7k_A           74 EDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMAST-ANFVMPELKHGI-GCSVGAAILGFTHG-  150 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETT-CEEECCGGGGTC-CCHHHHHHHHHHHC-
T ss_pred             hhHHHHHHHHHHHHHHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCC-CEEeCcccccCC-CCCcHHHHHHHHhH-
Confidence            221344556788999999999999999999999999999999999999987 899999999999 68777449999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~  231 (243)
                      ..++++++++|++++|+||+++||||+|+|+ +++.+++.++++++++.+  +.++..+|+.+++.....++
T Consensus       151 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~~~  219 (250)
T 2a7k_A          151 FSTMQEIIYQCQSLDAPRCVDYRLVNQVVES-SALLDAAITQAHVMASYP--ASAFINTKRAVNKPFIHLLE  219 (250)
T ss_dssp             HHHHHHHHHHCCCBCHHHHHHHTCCSEEECH-HHHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcccHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhhcCHH
Confidence            9999999999999999999999999999997 899999999999999998  89999999999876554443

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=100.00  E-value=8.2e-52  Score=342.94  Aligned_cols=216  Identities=23%  Similarity=0.297  Sum_probs=197.4

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||   +.|++|.+|+.+|.+++++++.| +++ +||+||.|+.||+|.|++++....     ...
T Consensus         7 v~~~~~~~v~~itlnrp---~~Nal~~~~~~~L~~al~~~~~d-~vr-~vvltg~g~~F~aG~Dl~~~~~~~-----~~~   76 (233)
T 3r6h_A            7 VTYTHDDAIGVIRMDDG---KVNVLGPTMQQALNEAIDAADRD-NVG-ALVIAGNHRVFSGGFDLKVLTSGE-----AKP   76 (233)
T ss_dssp             EEEEEETTEEEEEECCS---SSCCCSHHHHHHHHHHHHHHHHH-TCS-EEEEECCSSEEECCSCHHHHC--------CHH
T ss_pred             eEEEEECCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHHhC-CCe-EEEEECCCCCccCCcChHHHhccC-----hHH
Confidence            67889999999999999   78999999999999999999987 689 999999999999999999987521     223


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSAT  161 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~  161 (243)
                      ...+...+++++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+.+|++|++++++++| ..
T Consensus        77 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl~~~~~g~~~l~~~~g-~~  154 (233)
T 3r6h_A           77 AIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHA-YNVQANEVAIGMTIPYAAMEVLKLRLT-PS  154 (233)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTT-CCEECCGGGGTCCCCHHHHHHHHHHSC-HH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCC-cEEECchhhhCCCCCccHHHHHHHHhC-HH
Confidence            3456677889999999999999999999999999999999999999987 999999999999657777889999999 99


Q ss_pred             HHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHhh
Q 026137          162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGL  232 (243)
Q Consensus       162 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~~  232 (243)
                      ++++++++|++++|+||+++||||+|+|+ +++.+++.++|+++++.|  +.+++.+|+.+++.....++.
T Consensus       155 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~~  222 (233)
T 3r6h_A          155 AYQQAAGLAKTFFGETALAAGFIDEISLP-EVVLSRAEEAAREFAGLN--QQAHNATKLRARAEALKAIRA  222 (233)
T ss_dssp             HHHHHHHSCCEECHHHHHHHTSCSEECCG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHcCCcCCHHHHHHcCCCcEeeCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhHHHH
Confidence            99999999999999999999999999998 899999999999999998  999999999999888776664

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=100.00  E-value=2.9e-52  Score=352.24  Aligned_cols=215  Identities=20%  Similarity=0.278  Sum_probs=196.3

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|++||+|.|++++..... .. ...
T Consensus         6 v~~~~~~~va~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~-~~~   80 (268)
T 3i47_A            6 LLYEIQDKVGLLTMNRIS--KHNAFDNQLLTEMRIRLDSAINDTNVR-VIVLKANGKHFSAGADLTWMQSMAN-FT-EEE   80 (268)
T ss_dssp             EEEEEETTEEEEEECCTT--TTTCBCHHHHHHHHHHHHHHHHCTTCS-EEEEEECSSCSBCSBCHHHHHHHHT-CC-HHH
T ss_pred             EEEEEECCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHHHhCCCeE-EEEEECCCCCeeCCCChhhhhcccc-cc-HHH
Confidence            678999999999999998  899999999999999999999999999 9999999999999999999875322 11 222


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSAT  161 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~  161 (243)
                      ...+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+.++++++| ..
T Consensus        81 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~l~~~vG-~~  157 (268)
T 3i47_A           81 NLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTS-ARFCFSEVKLGL-IPAVISPYVVRAIG-ER  157 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCGGGGTC-CCTTTHHHHHHHHC-HH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCC-CEEECcccccCC-CcccHHHHHHHHhC-HH
Confidence            3344567788999999999999999999999999999999999999987 899999999999 68888779999999 99


Q ss_pred             HHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       162 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      ++++++++|++++|+||+++||||+|||+ +++.+++.++|+++++.|  +.+++.+|+.++....
T Consensus       158 ~A~~llltg~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  220 (268)
T 3i47_A          158 AAKMLFMSAEVFDATRAYSLNLVQHCVPD-DTLLEFTLKYASQISNNA--PEAVKNSKQLAQYVAN  220 (268)
T ss_dssp             HHHHHHHHCCEEEHHHHHHTTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCccCHHHHHHcCCCcEeeCh-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhhc
Confidence            99999999999999999999999999998 899999999999999998  9999999999987543

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=100.00  E-value=9.2e-52  Score=342.41  Aligned_cols=216  Identities=23%  Similarity=0.309  Sum_probs=197.3

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||   +.|++|.+|+.+|.+++++++.|+  + +||+||.|++||+|.|++++...      ...
T Consensus         8 v~~~~~~~v~~itlnrp---~~Nal~~~~~~~L~~al~~~~~d~--~-~vvltg~g~~F~aG~Dl~~~~~~------~~~   75 (232)
T 3ot6_A            8 VSYHLDDGVATLTLNNG---KVNAISPDVIIAFNAALDQAEKDR--A-IVIVTGQPGILSGGYDLKVMTSS------AEA   75 (232)
T ss_dssp             EEEEEETTEEEEEECCT---TTTCBCHHHHHHHHHHHHHHHHTT--C-EEEEECBTEEEECCBCHHHHHHC------HHH
T ss_pred             eEEEEECCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHhcCC--C-EEEEECCCCCccCCcCHHHHhhC------hHH
Confidence            67889999999999999   789999999999999999999764  8 99999999999999999998752      233


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSAT  161 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~  161 (243)
                      ...+...+++++.++.++||||||+|||+|+|||++|+++||+||+++++++|++||+++|+.+|++|++++++++| ..
T Consensus        76 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~~~ig-~~  154 (232)
T 3ot6_A           76 AINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLR-KS  154 (232)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSC-HH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHHHHhC-HH
Confidence            44567778899999999999999999999999999999999999999864799999999999557777889999999 99


Q ss_pred             HHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHhhh
Q 026137          162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGLD  233 (243)
Q Consensus       162 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~~~  233 (243)
                      ++++++++|++++|+||+++||||+|+|+ +++.+++.++|+++++.|  +.+++.+|+.+++.....++..
T Consensus       155 ~a~~l~ltg~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~~~  223 (232)
T 3ot6_A          155 AFNRSVINAEMFDPEGAMAAGFLDKVVSV-EELQGAALAVAAQLKKIN--MNAHKKTKLKVRKGLLDTLDAA  223 (232)
T ss_dssp             HHHHHHTSCCEECHHHHHHHTSCSEEECT-TTHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCccCHHHHHHCCCCCEecCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhHhHHHHH
Confidence            99999999999999999999999999998 899999999999999998  9999999999998877766643

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=100.00  E-value=1.5e-51  Score=346.86  Aligned_cols=216  Identities=19%  Similarity=0.322  Sum_probs=195.7

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  + |++|.+|+.+|.+++++++.|++++ +|||||.|+.||+|.|++++.....    ...
T Consensus         8 v~~~~~~~v~~itlnrp~--~-Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~----~~~   79 (261)
T 3pea_A            8 LSVRVEDHIAVATLNHAP--A-NAMSSQVMHDVTELIDQVEKDDNIR-VVVIHGEGRFFSAGADIKEFTSVTE----AKQ   79 (261)
T ss_dssp             EEEEEETTEEEEEECCTT--T-TCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCSBCCBCGGGSSTTCC----HHH
T ss_pred             eEEEEECCEEEEEECCCC--C-CCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCceeCCcCHHHHhhcCc----hhH
Confidence            678899999999999997  7 9999999999999999999999999 9999999999999999999865311    233


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+....+.++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus        80 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG-~  156 (261)
T 3pea_A           80 ATELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATES-AKLGLPELTLGL-IPGFAGTQRLPRYVG-K  156 (261)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCGGGGTC-CCCSSHHHHHHHHHC-H
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC-CEEECcccccCc-CCCccHHHHHHHHhC-H
Confidence            3445566778999999999999999999999999999999999999987 899999999999 67665 679999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~  231 (243)
                      .++++++++|++++|+||+++||||+|+|+ +++.+++.++|+++++.+  +.+++.+|+.+++.....++
T Consensus       157 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~  224 (261)
T 3pea_A          157 AKACEMMLTSTPITGAEALKWGLVNGVFAE-ETFLDDTLKVAKQIAGKS--PATARAVLELLQTTKSSHYY  224 (261)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHGGGCCHHHH
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCccEecCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhcCCHH
Confidence            999999999999999999999999999998 889999999999999998  99999999999876544433

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=100.00  E-value=2.5e-51  Score=345.78  Aligned_cols=221  Identities=23%  Similarity=0.280  Sum_probs=198.9

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCcc-ccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFF-SNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F-~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.++++.++.|++++ +|||||.|+.| |+|.|++++..... .....
T Consensus         6 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~FF~aG~Dl~~~~~~~~-~~~~~   81 (263)
T 3lke_A            6 VHTEIQNDALYITLDYPE--KKNGLDAELGTSLLEAIRAGNNETSIH-SIILQSKHRAYFSSGPRLEDLLICAS-DQSDV   81 (263)
T ss_dssp             EEEEECSSEEEEEECCGG--GTTBCCHHHHHHHHHHHHHHHHCSSCC-EEEEEESCTTEEECBSCHHHHHHHHH-CSSSH
T ss_pred             EEEEEECCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHhcCCCeE-EEEEEcCCCceEecCcCHHHHHhhcc-cCCHH
Confidence            678899999999999998  899999999999999999999999999 99999999999 99999999875100 00123


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                      ....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~~~vG-  158 (263)
T 3lke_A           82 RLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRR-AKFLENFHKMGI-SPDLGASYFLPRIIG-  158 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETT-CEEECCHHHHTC-CCCTTHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCC-CEEeCchHhhCC-CCCccHHHHHHHHhC-
Confidence            34456677889999999999999999999999999999999999999987 899999999999 67776 579999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~  231 (243)
                      ..++++++++|++++|+||+++||||+|+|+.+++.+++.++|+++++.|  +.+++.+|+.+++.....++
T Consensus       159 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~  228 (263)
T 3lke_A          159 YEQTMNLLLEGKLFTSEEALRLGLIQEICENKQELQERVKNYLKAVSEGY--VPAIAATKKLLKGKAAEELK  228 (263)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHTSC--HHHHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHhCCCcCHHHHHHcCCCcEecCChhHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhhcCHH
Confidence            99999999999999999999999999999934899999999999999998  99999999999887665554

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=100.00  E-value=4.2e-51  Score=346.18  Aligned_cols=214  Identities=19%  Similarity=0.250  Sum_probs=196.7

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  + |++|.+|+.+|.++++.++.|++++ +|||||.|++||+|.|++++... .    ...
T Consensus        26 v~~~~~~~Va~ItlnrP~--~-Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~-~----~~~   96 (277)
T 4di1_A           26 VSVVADQGLATLVVSRPP--T-NAMTRQVYREIVAAADELGRRDDIG-AVVLFGGHEIFSAGDDMPELRTL-N----APE   96 (277)
T ss_dssp             EEEEEETTEEEEEECCTT--T-TCBCHHHHHHHHHHHHHHHHCTTCC-EEEEECCSSCSBCCBCHHHHHTC-C----HHH
T ss_pred             EEEEEECCEEEEEECCCC--C-CCCCHHHHHHHHHHHHHHHhCCCcE-EEEEECCCCCEecCcCccccccc-C----hHH
Confidence            678999999999999997  7 9999999999999999999999999 99999999999999999998753 1    334


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus        97 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~lGl-~p~~g~~~~L~r~vG-~  173 (277)
T 4di1_A           97 ADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDN-VKFGATEILAGL-IPGGGGMGRLTRVVG-S  173 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECGGGGGTC-CCCTTHHHHHHHHHC-H
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCC-CEEECcccccCC-CCCchHHHHHHHHhC-H
Confidence            4556677889999999999999999999999999999999999999987 999999999999 67776 679999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVL  230 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l  230 (243)
                      .++++++++|++++|+||+++||||+|+|+ +++.+++.++|+++++.|  +.+++.+|+.+++.....+
T Consensus       174 ~~A~~llltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l  240 (277)
T 4di1_A          174 SRAKELVFSGRFFDAEEALALGLIDDMVAP-DDVYDSAVAWARRYLECP--PRALAAAKAVINDVFELEA  240 (277)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSCSEEECG-GGHHHHHHHHHHTTTTSC--HHHHHHHHHHHHHTTTSCH
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCccEEeCh-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhhcCCH
Confidence            999999999999999999999999999998 889999999999999998  9999999999987654333

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=100.00  E-value=3.9e-51  Score=347.49  Aligned_cols=217  Identities=24%  Similarity=0.280  Sum_probs=196.1

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|++||+|.|++++..... ......
T Consensus        19 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~~   94 (279)
T 3g64_A           19 LRVEITDGVATVTLARPD--KLNALTFEAYADLRDLLAELSRRRAVR-ALVLAGEGRGFCSGGDVDEIIGATL-SMDTAR   94 (279)
T ss_dssp             EEEEEETTEEEEEESCGG--GTTCBCHHHHHHHHHHHHHHHHTTCCS-EEEEEECSSCSBCCBCTTTTHHHHT-TCCHHH
T ss_pred             EEEEEECCEEEEEECCCc--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCceecCcCHHHHhhccc-cchhhH
Confidence            678899999999999997  899999999999999999999999999 9999999999999999998865422 111223


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+.+.+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+.+|++| ++++++++| .
T Consensus        95 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl~~p~~g~~~~l~r~vG-~  172 (279)
T 3g64_A           95 LLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPS-TRFAFLFTRVGLSGGDMGAAYLLPRVVG-L  172 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEECTT-CEEECCGGGGTCCSCCTTHHHHHHHHHC-H
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCeeccccHHHHHhCCEEEEeCC-CEEeCchhhcCCCCCchhHHHHHHHHhC-H
Confidence            3456667889999999999999999999999999999999999999987 899999999999317765 579999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      .++++++++|++++|+||+++||||+|+|+ +++.+++.++|+++++.+  +.+++.+|+.++....
T Consensus       173 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  236 (279)
T 3g64_A          173 GHATRLLMLGDTVRAPEAERIGLISELTEE-GRADEAARTLARRLADGP--ALAHAQTKALLTAELD  236 (279)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTCCSEECCT-TCHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCcCHHHHHHCCCCCEecCc-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999998 889999999999999998  9999999999987644

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=100.00  E-value=4.1e-51  Score=344.87  Aligned_cols=213  Identities=20%  Similarity=0.324  Sum_probs=196.1

Q ss_pred             ceee-eeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchH
Q 026137            2 CTSE-KHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGAR   79 (243)
Q Consensus         2 i~~~-~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~   79 (243)
                      |.++ .+++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.| +.||+|.|++++... .    .
T Consensus        10 v~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~~F~aG~Dl~~~~~~-~----~   81 (265)
T 3kqf_A           10 ISVDYATPHVVKISLNRER--QANSLSLALLEELQNILTQINEEANTR-VVILTGAGEKAFCAGADLKERAGM-N----E   81 (265)
T ss_dssp             EEEECCSTTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHTCTTCC-EEEEEESSSSEEECCBCHHHHTTC-C----H
T ss_pred             EEEEEeeCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEecCCCCeeeeCcChHHHhcc-C----H
Confidence            6778 88999999999997  889999999999999999999999999 99999999 999999999998753 1    3


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhC
Q 026137           80 ERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVG  158 (243)
Q Consensus        80 ~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g  158 (243)
                      .....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus        82 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG  159 (265)
T 3kqf_A           82 EQVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAES-ASLGLTETTLAI-IPGAGGTQRLPRLIG  159 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCGGGGTC-CCCSSHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC-cEEECcccccCc-CCCccHHHHHHHHhC
Confidence            444566778899999999999999999999999999999999999999988 999999999999 67765 679999999


Q ss_pred             CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137          159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                       ..++++++++|++++|+||+++||||+|+|+ +++.+++.++|+++++.+  +.+++.+|+.+++....
T Consensus       160 -~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~~  225 (265)
T 3kqf_A          160 -VGRAKELIYTGRRISAQEAKEYGLVEFVVPV-HLLEEKAIEIAEKIASNG--PIAVRLAKEAISNGIQV  225 (265)
T ss_dssp             -HHHHHHHHHHCCCEEHHHHHHHTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHTTS
T ss_pred             -HHHHHHHHHcCCCCCHHHHHHCCCccEEeCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhcC
Confidence             9999999999999999999999999999997 899999999999999998  99999999999876443

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=100.00  E-value=4.4e-51  Score=347.89  Aligned_cols=214  Identities=21%  Similarity=0.301  Sum_probs=198.0

Q ss_pred             ceeeee--CCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchH
Q 026137            2 CTSEKH--GDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGAR   79 (243)
Q Consensus         2 i~~~~~--~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~   79 (243)
                      |.++++  ++|++|+||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|+.||+|.|++++...    ...
T Consensus        26 v~~~~~~~~~va~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~G~~F~aG~Dl~~~~~~----~~~   98 (286)
T 3myb_A           26 LLLQDRDERGVVTLTLNRPQ--AFNALSEAMLAALGEAFGTLAEDESVR-AVVLAASGKAFCAGHDLKEMRAE----PSR   98 (286)
T ss_dssp             SEEEEECTTSEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHTCTTCC-EEEEEECSSCSBCCBCHHHHHSS----CCH
T ss_pred             EEEEEecCCCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHHhCCCeE-EEEEECCCCCccCCcChhhhhcc----ccH
Confidence            678888  999999999997  889999999999999999999999999 99999999999999999998752    114


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCC
Q 026137           80 ERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGS  159 (243)
Q Consensus        80 ~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~  159 (243)
                      .....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+. |++|++++++++| 
T Consensus        99 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~lGl~-~~g~~~~L~r~vG-  175 (286)
T 3myb_A           99 EYYEKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRD-ARFAVSGINVGLF-CSTPGVALSRNVG-  175 (286)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSSCEEEEECSCEETHHHHHHHHSSEEEEETT-CEEECGGGGGTCC-CHHHHHHHTTTSC-
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCEEEEECCeehHHHHHHHHhCCEEEEcCC-CEEECcccccCCC-CchHHHHHHHHcC-
Confidence            445567778899999999999999999999999999999999999999987 9999999999995 8888899999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      ..++++++++|++++|+||+++||||+|+|+ +++.+++.++|+++++.+  +.+++.+|+.+++....
T Consensus       176 ~~~A~~llltG~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~~  241 (286)
T 3myb_A          176 RKAAFEMLVTGEFVSADDAKGLGLVNRVVAP-KALDDEIEAMVSKIVAKP--RAAVAMGKALFYRQIET  241 (286)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSCSEEECG-GGHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCCcEecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999998 899999999999999998  99999999999876443

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=100.00  E-value=4.3e-51  Score=344.34  Aligned_cols=215  Identities=22%  Similarity=0.256  Sum_probs=193.9

Q ss_pred             eeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcC-CCcchHHHHHH
Q 026137            6 KHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAG-SRTGARERVHY   84 (243)
Q Consensus         6 ~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~-~~~~~~~~~~~   84 (243)
                      .+++|++||||||+  + |++|.+|+.+|.++++.++.|+++| +|||||.|+.||+|.|++++.... ..+........
T Consensus        13 ~~~~v~~itlnrP~--~-Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   88 (263)
T 3l3s_A           13 LSEGVLTLTLGRAP--A-HPLSRAMIAALHDALRRAMGDDHVH-VLVIHGPGRIFCAGHDLKEIGRHRADPDEGRAFVTD   88 (263)
T ss_dssp             ESSSEEEEEECSTT--T-CCCCHHHHHHHHHHHHHHHTCTTCC-EEEEECCSSEEECCSCSCCCCC-----CCSHHHHHH
T ss_pred             eeCCEEEEEECCCC--C-CCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCccCCcChHHHhhccccccccHHHHHH
Confidence            48999999999997  7 9999999999999999999999999 999999999999999999876421 00111344556


Q ss_pred             HHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHH
Q 026137           85 MFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARR  164 (243)
Q Consensus        85 ~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~  164 (243)
                      +.+.+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+. |+++++++++++| ..+++
T Consensus        89 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl~-~~g~~~~l~r~vG-~~~A~  165 (263)
T 3l3s_A           89 LFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPA-ARFCLPGVQNGGF-CTTPAVAVSRVIG-RRAVT  165 (263)
T ss_dssp             HHHHHHHHHHHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTT-CEEECCTTTTTSC-CHHHHHHHHTTSC-HHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCC-CEEeCchhccCCC-CccHHHHHHHHcC-HHHHH
Confidence            7778899999999999999999999999999999999999999987 9999999999995 8888899999999 99999


Q ss_pred             HHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHH
Q 026137          165 DVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVL  230 (243)
Q Consensus       165 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l  230 (243)
                      +++++|++++|+||+++||||+|+|+ +++.+++.++|+++++.|  +.+++.+|+.+++.....+
T Consensus       166 ~l~ltg~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l  228 (263)
T 3l3s_A          166 EMALTGATYDADWALAAGLINRILPE-AALATHVADLAGALAARN--QAPLRRGLETLNRHLELPL  228 (263)
T ss_dssp             HHHHHCCEEEHHHHHHHTSSSEECCH-HHHHHHHHHHHHHHHSSC--HHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHcCCCCCHHHHHHCCCccEEeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhcCCH
Confidence            99999999999999999999999997 899999999999999998  9999999999987654433

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=6.6e-51  Score=341.60  Aligned_cols=215  Identities=31%  Similarity=0.396  Sum_probs=191.7

Q ss_pred             CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      ||.++ +++|++||||||+  +.|++|.+|+.+|.++++.++.|++++ +|||||.|+.||+|+|++++..... .....
T Consensus         1 ~i~~~-~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~   75 (253)
T 1uiy_A            1 MVQVE-KGHVAVVFLNDPE--RRNPLSPEMALSLLQALDDLEADPGVR-AVVLTGRGKAFSAGADLAFLERVTE-LGAEE   75 (253)
T ss_dssp             CEEEE-CSSEEEEEECCGG--GTCCCCHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSCSBCCCCHHHHHHHTT-SCHHH
T ss_pred             CEEEE-eCCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCcccCcChHHHHhccc-CCchh
Confidence            67889 9999999999997  899999999999999999999999999 9999999999999999998865210 01111


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCH
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSA  160 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~  160 (243)
                      ... ....+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|++++++++| .
T Consensus        76 ~~~-~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~l~r~vG-~  151 (253)
T 1uiy_A           76 NYR-HSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEE-ARLGYTEVKIGF-VAALVSVILVRAVG-E  151 (253)
T ss_dssp             HHH-HHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETT-CEEECCHHHHTC-CCHHHHHHHHHHSC-H
T ss_pred             HHH-HHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCC-cEEeCcccccCc-CCchHHHHHHHHhC-H
Confidence            111 1112678899999999999999999999999999999999999987 899999999999 78888669999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      .++++++++|++++|+||+++||||+|+|+ +++.+++.++++++++.+  +.++..+|+.+++...
T Consensus       152 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  215 (253)
T 1uiy_A          152 KAAKDLLLTGRLVEAREAKALGLVNRIAPP-GKALEEAKALAEEVAKNA--PTSLRLTKELLLALPG  215 (253)
T ss_dssp             HHHHHHHHHCCEEEHHHHHHHTSCSEEECT-TCHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHhCCccCHHHHHHCCCcceecCh-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999998 889999999999999998  8999999999977543

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=1.8e-50  Score=339.65  Aligned_cols=211  Identities=24%  Similarity=0.316  Sum_probs=186.5

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|+.||+|+|++++.....    ...
T Consensus         5 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~----~~~   77 (257)
T 2ej5_A            5 IRYEVKGQVAWLTLNRPD--QLNAFTEQMNAEVTKALKQAGADPNVR-CVVITGAGRAFCAGEDLSGVTEEMD----HGD   77 (257)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSCSBCCBCC-------C----HHH
T ss_pred             eEEEeECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHhhCCCeE-EEEEECCCCCccCCcCHHHHhhccc----hhH
Confidence            678899999999999998  899999999999999999999999999 9999999999999999998764211    111


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                      ....  .+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus        78 ~~~~--~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-~  152 (257)
T 2ej5_A           78 VLRS--RYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEK-ASFAPAFIHVGL-VPDAGHLYYLPRLVG-R  152 (257)
T ss_dssp             HHHH--THHHHHHHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCGGGGTC-CCCTTHHHHHHHHHC-H
T ss_pred             HHHH--HHHHHHHHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCC-CEEeCcccccCC-CCcchHHHHHHHHhC-H
Confidence            1111  3678889999999999999999999999999999999999987 999999999999 67776 569999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      .++++++++|++++|+||+++||||+|+|+ +++.+++.++++++++.+  +.+++.+|+.+++...
T Consensus       153 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  216 (257)
T 2ej5_A          153 AKALELAVLGEKVTAEEAAALGLATKVIPL-SDWEEEVKQFAERLSAMP--TKAIGLIKRLLRESEE  216 (257)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTCCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCccCHHHHHHcCCcceecCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999998 889999999999999998  8999999999987544

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=100.00  E-value=1.5e-50  Score=345.28  Aligned_cols=217  Identities=20%  Similarity=0.309  Sum_probs=190.6

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcc--hH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTG--AR   79 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~--~~   79 (243)
                      |.++.+++|++||||||+  +.|++|.+|+.+|.++++.++.|++++ +|||||.|+.||+|.|++++........  ..
T Consensus        26 v~~~~~~~va~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~  102 (290)
T 3sll_A           26 LVDRPRPEIALVTLNRPE--RMNAMAFDVMLPFKQMLVDISHDNDVR-AVVITGAGKGFCSGADQKSAGPIPHIGGLTQP  102 (290)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCCCHHHHHHHHHHHHHHHTCTTCC-EEEEEESTTCSBCC------CCCSSCTTCCHH
T ss_pred             EEEEEECCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHHHcCCCee-EEEEECCCCCeeCCcChHHHhcccccccccch
Confidence            578889999999999997  899999999999999999999999999 9999999999999999998865322110  12


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCCh-hh-HHHHHHHh
Q 026137           80 ERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPD-YC-AALFREKV  157 (243)
Q Consensus        80 ~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~-~g-~~~l~~~~  157 (243)
                      .....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|+ +| ++++++++
T Consensus       103 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl-~p~~~g~~~~L~r~v  180 (290)
T 3sll_A          103 TIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQD-AYFRAAGINNGL-TASELGLSYLLPRAI  180 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECTTTTTTS-CSCCTTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCC-CEEECchhccCc-CCCcccHHHHHHHHh
Confidence            234456777889999999999999999999999999999999999999988 899999999999 676 54 67999999


Q ss_pred             CCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      | ..++++++++|++++|+||+++||||+|+|+ +++.+++.++|+++++.+  +.+++.+|+.++....
T Consensus       181 G-~~~A~~llltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  246 (290)
T 3sll_A          181 G-TSRASDIMLTGRDVDADEAERIGLVSRKVAS-ESLLEECYAIGERIAGFS--RPGIELTKRTIWSGLD  246 (290)
T ss_dssp             C-HHHHHHHHHHCCCEEHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHT
T ss_pred             C-HHHHHHHHHcCCCCCHHHHHHCCCccEEeCh-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhcc
Confidence            9 9999999999999999999999999999998 889999999999999998  9999999999987655

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=100.00  E-value=8.9e-51  Score=344.34  Aligned_cols=216  Identities=18%  Similarity=0.235  Sum_probs=195.4

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.++++.++.|++++ +|||||.|++||+|.|++++.....   +...
T Consensus        30 v~~~~~~~v~~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~---~~~~  103 (276)
T 3rrv_A           30 IDVRADGALRIITLNRPD--SLNSVNDDLHVGLARLWQRLTDDPTAR-AAVITGAGRAFSAGGDFGYLKELSA---DADL  103 (276)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCSBCCBCHHHHHHHHH---CHHH
T ss_pred             EEEEEECCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCcccCCcCHHHHhhccc---chHH
Confidence            678899999999999997  799999999999999999999999999 9999999999999999999875311   1233


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus       104 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG-~  180 (276)
T 3rrv_A          104 RAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAEN-AYLADPHVQVGL-VAADGGPLTWPLHIS-L  180 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETT-CEEECCHHHHTC-CCCSSHHHHGGGTSC-H
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHHCCEEEEeCC-CEEECchhccCc-CCCccHHHHHHHHhC-H
Confidence            4456677889999999999999999999999999999999999999987 899999999999 57665 578999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~  231 (243)
                      .++++++++|++++|+||+++||||+|+   +++.+++.++|+++++.|  +.+++.+|+.+++.....++
T Consensus       181 ~~A~ellltG~~i~A~eA~~~GLv~~vv---~~l~~~a~~~A~~la~~~--~~a~~~~K~~l~~~~~~~l~  246 (276)
T 3rrv_A          181 LLAKEYALTGTRISAQRAVELGLANHVA---DDPVAEAIACAKKILELP--QQAVESTKRVLNIHLERAVL  246 (276)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSCSEEE---SSHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCHHHHHHcCCHHHHH---HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhhcCHH
Confidence            9999999999999999999999999999   469999999999999998  99999999999876655444

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=8.6e-52  Score=347.50  Aligned_cols=217  Identities=24%  Similarity=0.278  Sum_probs=188.4

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|++||+|.|++++..... .   ..
T Consensus         8 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~---~~   80 (256)
T 3qmj_A            8 LQIDDDNRVRTLTLNRPE--ALNAFNEALYDATAQALLDAADDPQVA-VVLLTGSGRGFSAGTDLAEMQARIT-D---PN   80 (256)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTEEECCBCHHHHHHHHH-S---SS
T ss_pred             EEEEEECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCcccCcCHHHHhhccc-c---hh
Confidence            678899999999999997  889999999999999999999999999 9999999999999999999865311 0   00


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus        81 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG-~  157 (256)
T 3qmj_A           81 FSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSST-ARLKCPFTSLGV-APEAASSYLLPQLVG-R  157 (256)
T ss_dssp             CCCCSSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEEETT-CEEECCGGGC----CCTTHHHHHHHHHH-H
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEeCC-CEEECcccccCC-CCCccHHHHHHHHhC-H
Confidence            0112344678889999999999999999999999999999999999987 999999999999 57666 578999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~  231 (243)
                      .++++++++|++++|+||+++||||+|+|+ +++.+++.++|+++++.+  +.+++.+|+.+++.....++
T Consensus       158 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~  225 (256)
T 3qmj_A          158 QNAAWLLMSSEWIDAEEALRMGLVWRICSP-EELLPEARRHAEILAAKP--ISSLMAVKHTMVEPNRAQIA  225 (256)
T ss_dssp             HHHHHHHHSCCCEEHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCccEEeCH-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhcCCHH
Confidence            999999999999999999999999999998 899999999999999998  99999999999876554444

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=100.00  E-value=8.5e-51  Score=341.11  Aligned_cols=207  Identities=21%  Similarity=0.320  Sum_probs=189.4

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|+.||+|.|++++..       .  
T Consensus         8 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~-------~--   75 (255)
T 3p5m_A            8 ISVEHDGAVLRIRLDRPE--KLNAVDTPMLEELSVHIRDAEADESVR-AVLLTGAGRAFCSGGDLTGGDT-------A--   75 (255)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTEECHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSCSBCEECC---CH-------H--
T ss_pred             EEEEEECCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHHhhCCCeE-EEEEECCCCCccCCCChhhhcc-------h--
Confidence            678899999999999997  889999999999999999999999999 9999999999999999998652       1  


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                        .+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus        76 --~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG-~  150 (255)
T 3p5m_A           76 --GAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPA-SYFQLAFTRVGL-MPDGGASALLPLLIG-R  150 (255)
T ss_dssp             --HHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEECTT-CEEECGGGGGTC-CCCTTHHHHTHHHHC-H
T ss_pred             --HHHHHHHHHHHHHHhCCCCEEEEeCCeehhhHHHHHHHCCEEEEcCC-cEEeCcccccCc-CCCccHHHHHHHHhC-H
Confidence              34566788999999999999999999999999999999999999987 899999999999 56665 679999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      .++++++++|++++|+||+++||||+|+|+ +++.+++.++++++++.+  +.+++.+|+.+++....
T Consensus       151 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~  215 (255)
T 3p5m_A          151 ARTSRMAMTAEKISAATAFEWGMISHITSA-DEYESVLTDVLRSVSGGP--TLAFGWTKRALAAATLA  215 (255)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHTTSCSEECCT-TCHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcCCCcCHHHHHHCCCCCEeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhcC
Confidence            999999999999999999999999999998 889999999999999998  99999999999875443

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=100.00  E-value=1.2e-50  Score=342.79  Aligned_cols=216  Identities=19%  Similarity=0.289  Sum_probs=192.1

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|+.||+|.|++++.......+....
T Consensus         5 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   81 (269)
T 1nzy_A            5 IGHRVEDGVAEITIKLPR--HRNALSVKAMQEVTDALNRAEEDDSVG-AVMITGAEDAFCAGFYLREIPLDKGVAGVRDH   81 (269)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCSBCCBCGGGSCSSSHHHHHHHH
T ss_pred             EEEEEECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHhhCCCee-EEEEECCCCCcccCcCHHHHhhcccccChHHH
Confidence            678899999999999997  899999999999999999999999999 99999999999999999987531000001111


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus        82 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-~  158 (269)
T 1nzy_A           82 FRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADS-AKFVCAWHTIGI-GNDTATSYSLARIVG-M  158 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCHHHHTC-CCCTTHHHHHHHHHH-H
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCC-CEEeCcccccCC-CCCccHHHHHHHHhh-H
Confidence            1244556788999999999999999999999999999999999999987 899999999999 67776 579999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL  226 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~  226 (243)
                      .++++++++|++++|+||+++||||+|+|+ +++.+++.++++++++.+  +.+++.+|+.+++..
T Consensus       159 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~  221 (269)
T 1nzy_A          159 RRAMELMLTNRTLYPEEAKDWGLVSRVYPK-DEFREVAWKVARELAAAP--THLQVMAKERFHAGW  221 (269)
T ss_dssp             HHHHHHHHHCCCBCHHHHHHHTSCSCEECH-HHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCccEeeCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhh
Confidence            999999999999999999999999999997 899999999999999998  899999999997653

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=100.00  E-value=9e-51  Score=346.09  Aligned_cols=212  Identities=22%  Similarity=0.339  Sum_probs=191.7

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||||+  +.|++|.+|+.+|.++++.++.|++++ +|||||.|+.||+|+|++++....   . ...
T Consensus        35 v~~~~~~~V~~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~~---~-~~~  107 (287)
T 2vx2_A           35 TSARQLDGIRNIVLSNPK--KRNTLSLAMLKSLQSDILHDADSNDLK-VIIISAEGPVFSSGHDLKELTEEQ---G-RDY  107 (287)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCCCHHHHHHHHHHHHTTTTCTTCC-EEEEEESSSEEECCSCCC-CCGGG---C-HHH
T ss_pred             eEEEEECCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhCCCeE-EEEEECCCCCccCCcCHHHHhccc---c-hhH
Confidence            578889999999999997  889999999999999999999999999 999999999999999999875421   1 223


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSAT  161 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~  161 (243)
                      ...+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+..+++++| ..
T Consensus       108 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~lGl-~p~~g~~~L~r~vG-~~  184 (287)
T 2vx2_A          108 HAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDK-SSFATPGVNVGL-FCSTPGVALARAVP-RK  184 (287)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCGGGGTC-CCHHHHHHHHTTSC-HH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCC-CEEECchhhhCC-CCchHHHHHHHHhh-HH
Confidence            3345566788999999999999999999999999999999999999987 899999999999 68887544999999 99


Q ss_pred             HHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137          162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL  226 (243)
Q Consensus       162 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ++++++++|++++|+||+++||||+|||+ +++.+++.++++++++.+  +.+++.+|+.+++..
T Consensus       185 ~A~~llltg~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~  246 (287)
T 2vx2_A          185 VALEMLFTGEPISAQEALLHGLLSKVVPE-AELQEETMRIARKIASLS--RPVVSLGKATFYKQL  246 (287)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCCHHHHHHCCCcceecCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhh
Confidence            99999999999999999999999999998 889999999999999998  899999999987654

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=100.00  E-value=8e-51  Score=344.31  Aligned_cols=211  Identities=14%  Similarity=0.203  Sum_probs=192.2

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.++++++  +++++ +|||||.|+.||+|.|++++...    . ...
T Consensus        18 v~~~~~~~va~itlnrP~--~~Nal~~~~~~~L~~al~~~--d~~vr-~vVltg~g~~F~aG~Dl~~~~~~----~-~~~   87 (275)
T 3hin_A           18 LVVDTVGPVLTIGLNRPK--KRNALNDGLMAALKDCLTDI--PDQIR-AVVIHGIGDHFSAGLDLSELRER----D-ATE   87 (275)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHTSSC--CTTCC-EEEEEESSSCSBCCBCGGGCCCC----C-HHH
T ss_pred             EEEEEECCEEEEEEcCCC--cCCCCCHHHHHHHHHHHHHh--CcCce-EEEEECCCCCccCCCCHHHHhcc----C-hhh
Confidence            678899999999999997  89999999999999999998  57999 99999999999999999987642    1 233


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus        88 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG-~  164 (275)
T 3hin_A           88 GLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEAS-AYYALPEGSRGI-FVGGGGSVRLPRLIG-V  164 (275)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECGGGGGTC-CCCSSHHHHHHHHHC-H
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC-CEEECchhccCC-CCCccHHHHHHHHhC-H
Confidence            3345677888999999999999999999999999999999999999987 999999999999 67765 679999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      .++++++++|++++|+||+++||||+|||+ +++.+++.++|+++++.+  +.++..+|+.+++....
T Consensus       165 ~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~ia~~~--p~a~~~~K~~l~~~~~~  229 (275)
T 3hin_A          165 ARMADMMLTGRVYSAAEGVVHGFSQYLIEN-GSAYDKALELGNRVAQNA--PLTNFAVLQALPMIAEA  229 (275)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSCSEEESS-SCHHHHHHHHHHHHTTSC--HHHHHHHHTHHHHHHHS
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCCCEEeCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhcC
Confidence            999999999999999999999999999998 889999999999999998  99999999999875543

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=100.00  E-value=7e-51  Score=342.95  Aligned_cols=211  Identities=19%  Similarity=0.268  Sum_probs=192.1

Q ss_pred             ceeeeeCC-EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEKHGD-VFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~~~~-v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.++++++ |++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|++||+|.|++++.....    ..
T Consensus        11 i~~~~~~~gv~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~----~~   83 (263)
T 3moy_A           11 IATSRPVAGVGLIRLDRPD--ALNALNQTLEAEVLDAARDFDADLEIG-AIVVTGSERAFAAGADIAEMVTLTP----HQ   83 (263)
T ss_dssp             EEEECCSTTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEECCSSEEEESBCHHHHTTCCH----HH
T ss_pred             EEEEEeCCeEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCeeCCcChHHHhccCc----hh
Confidence            67788888 9999999997  889999999999999999999999999 9999999999999999999865311    11


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                         .+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        84 ---~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-  157 (263)
T 3moy_A           84 ---ARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADT-ARFGQPEITLGI-LPGLGGTQRLTRAVG-  157 (263)
T ss_dssp             ---HHHTTTTHHHHHHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETT-CEEECGGGGGTC-CCSSSTTTHHHHHHC-
T ss_pred             ---HHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCC-CEEeCcccccCC-CCchhHHHHHHHHhC-
Confidence               22456678899999999999999999999999999999999999987 899999999999 67765 679999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      ..++++++++|++++|+||+++||||+|+|+ +++.+++.++|++++..+  +.+++.+|+.+++....
T Consensus       158 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~  223 (263)
T 3moy_A          158 KAKAMDLCLTGRSLTAEEAERVGLVSRIVPA-ADLLDEALAVAQRIARMS--RPAGRAVKDAINEAFER  223 (263)
T ss_dssp             HHHHHHHHHHCCEEEHHHHHHTTSCSEEECG-GGHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCccEecCc-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999998 889999999999999998  99999999999876443

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=100.00  E-value=6.8e-50  Score=335.45  Aligned_cols=210  Identities=18%  Similarity=0.247  Sum_probs=190.3

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.++++.++. ++++ +|||||.|++||+|+|++++...    . ...
T Consensus         9 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~-~~vr-~vVltg~g~~F~aG~Dl~~~~~~----~-~~~   79 (254)
T 3isa_A            9 LAIERRPAAWTFTLSRPE--KRNALSAELVEALIDGVDAAHR-EQVP-LLVFAGAGRNFSAGFDFTDYETQ----S-EGD   79 (254)
T ss_dssp             EEEEECSSEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHH-TTCS-EEEEEESTTCSCCCBCCTTCTTS----C-HHH
T ss_pred             EEEEEECCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHhhc-CCcE-EEEEECCCCceeeCcChHHhhcc----C-chh
Confidence            678899999999999997  8999999999999999999987 5899 99999999999999999988652    1 222


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSAT  161 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~  161 (243)
                      .......+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|  |++++++++| ..
T Consensus        80 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p--g~~~l~~~vG-~~  154 (254)
T 3isa_A           80 LLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPE-AGFRMPGLKFGL-VL--GTRRFRDIVG-AD  154 (254)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTT-CEEECCGGGGTC-CC--SHHHHHHHHC-HH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCC-CEEECchhccCc-cH--HHHHHHHHcC-HH
Confidence            2233456788999999999999999999999999999999999999987 999999999999 57  5789999999 99


Q ss_pred             HHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137          162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       162 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      ++++++++|++++|+||+++||||+|+|+ +++.+++.++++++++.+  +.+++.+|+.+.++..+
T Consensus       155 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~  218 (254)
T 3isa_A          155 QALSILGSARAFDADEARRIGFVRDCAAQ-AQWPALIDAAAEAATALD--PATRATLHRVLRDDHDD  218 (254)
T ss_dssp             HHHHHHTTTCEEEHHHHHHTTSSSEECCG-GGHHHHHHHHHHHHTTSC--HHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHhCCCCcHHHHHHCCCccEEeCh-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhhhHH
Confidence            99999999999999999999999999998 899999999999999998  99999999998665443

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=100.00  E-value=1.7e-50  Score=342.75  Aligned_cols=210  Identities=19%  Similarity=0.283  Sum_probs=188.9

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.++++.++.|++++ +|||||.|+.||+|.|++++.....    .. 
T Consensus        27 v~~~~~~~va~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~----~~-   98 (278)
T 3h81_A           27 ILVERDQRVGIITLNRPQ--ALNALNSQVMNEVTSAATELDDDPDIG-AIIITGSAKAFAAGADIKEMADLTF----AD-   98 (278)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHTCTTCC-EEEEECCSSEEECCBCSHHHHTCCH----HH-
T ss_pred             EEEEEECCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHhhCCCeE-EEEEECCCCCeecCcCHHHHhccCh----hh-
Confidence            678899999999999997  889999999999999999999999999 9999999999999999999875311    11 


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                       ......++. +.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus        99 -~~~~~~~~~-~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~lGl-~p~~g~~~~L~r~vG-~  173 (278)
T 3h81_A           99 -AFTADFFAT-WGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADT-AKFGQPEIKLGV-LPGMGGSQRLTRAIG-K  173 (278)
T ss_dssp             -HHHHTTTGG-GHHHHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETT-CEEECGGGGGTC-CCCSSHHHHHHHHHC-H
T ss_pred             -HHHHHHHHH-HHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCC-CEEECchhhcCc-CCCccHHHHHHHHhC-H
Confidence             111222333 78899999999999999999999999999999999987 999999999999 57665 679999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      .++++++++|++++|+||+++||||+|+|+ +++.+++.++|+++++.+  +.+++.+|+.+++...
T Consensus       174 ~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~  237 (278)
T 3h81_A          174 AKAMDLILTGRTMDAAEAERSGLVSRVVPA-DDLLTEARATATTISQMS--ASAARMAKEAVNRAFE  237 (278)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhCCCcCHHHHHHCCCccEEeCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999998 889999999999999998  9999999999987544

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=100.00  E-value=5.3e-50  Score=336.97  Aligned_cols=210  Identities=21%  Similarity=0.308  Sum_probs=189.4

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|+.||+|+|++++...   .  .. 
T Consensus         7 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~---~--~~-   77 (258)
T 2pbp_A            7 IAARQEGAVGIIELARPD--VLNALSRQMVAEIVAAVEAFDRNEKVR-VIVLTGRGRAFAAGADIQEMAKD---D--PI-   77 (258)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCCCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTEEECCCCHHHHHTC---C--HH-
T ss_pred             EEEEeeCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCCccCCcCHHHHhcc---c--ch-
Confidence            567889999999999997  899999999999999999999999999 99999999999999999988642   1  11 


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+...+ +++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus        78 ~~~~~~~~-~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-~  153 (258)
T 2pbp_A           78 RLEWLNQF-ADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSA-AEFGFPEVNLGV-MPGAGGTQRLTKLIG-P  153 (258)
T ss_dssp             HHHHHCTT-HHHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEETT-CEEECGGGGGTC-CCCSSHHHHHHHHHC-H
T ss_pred             hHHHHHHH-HHHHHHHhCCCCEEEEEcCEEEhHHHHHHHhCCEEEEcCC-CEEECcccccCC-CCcccHHHHHHHHhC-H
Confidence            12223334 6788899999999999999999999999999999999987 999999999999 67665 579999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      .++++++++|++++|+||+++||||+++|+ +++.+++.++++++++.+  +.+++.+|+.++....
T Consensus       154 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  217 (258)
T 2pbp_A          154 KRALEWLWTGARMSAKEAEQLGIVNRVVSP-ELLMEETMRLAGRLAEQP--PLALRLIKEAVQKAVD  217 (258)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHTTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCccCHHHHHHcCCcceeeCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999998 889999999999999998  9999999999987544

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=100.00  E-value=1.2e-49  Score=336.13  Aligned_cols=210  Identities=20%  Similarity=0.292  Sum_probs=190.8

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec-CCCccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS-HGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g-~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++||||||   +.|++|.+|+.+|.++++.++.|++++ +||||| .|+.||+|+|++++..  . +   .
T Consensus        11 i~~~~~~~v~~itlnrp---~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~~g~~F~aG~Dl~~~~~--~-~---~   80 (265)
T 2ppy_A           11 LTVFKEDGIAEIHLHIN---KSNSYDLEFYKEFNAAIDDIRFDPDIK-VVIVMSDVPKFFSAGADINFLRS--A-D---P   80 (265)
T ss_dssp             EEEEEETTEEEEEECSS---TTCCBCHHHHHHHHHHHHHHHTCTTCC-EEEEEECSTTEEECCBCHHHHTT--S-C---H
T ss_pred             EEEEeeCCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEEcCCCCeeeeCcCHHHHhc--c-c---h
Confidence            67888999999999999   899999999999999999999999999 999999 8999999999998764  1 1   1


Q ss_pred             HHHHHHHHH-HHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCcc-ceeccccccCCCCChhh-HHHHHHHh
Q 026137           81 RVHYMFKSF-RPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKG-VLYMSEVDIGLTLPDYC-AALFREKV  157 (243)
Q Consensus        81 ~~~~~~~~~-~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a-~f~~p~~~~G~~~p~~g-~~~l~~~~  157 (243)
                      ....+...+ ++++.++.++||||||+|||+|+|||++|+++||+||++++ + +|++||+++|+ +|++| ++++++++
T Consensus        81 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-ag~f~~pe~~~Gl-~p~~g~~~~l~~~v  158 (265)
T 2ppy_A           81 RFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDE-AGKIGLPEVSLGV-LAGTGGTQRLARLI  158 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHTSSEEEEETT-CCCEECCGGGGTC-CCTTTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCCEEEEECCEEeeHHHHHHHhCCEEEEeCC-CCEEECcccccCC-CCCchHHHHHHHHh
Confidence            122344556 78899999999999999999999999999999999999988 8 99999999999 67776 57899999


Q ss_pred             CCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      | ..++++++++|++++|+||+++||||+|+|+ +++.+++.++++++++.+  +.+++.+|+.+++...
T Consensus       159 G-~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  224 (265)
T 2ppy_A          159 G-YSRALDMNITGETITPQEALEIGLVNRVFPQ-AETRERTREYARKLANSA--TYAVSNIKLAIMNGKE  224 (265)
T ss_dssp             C-HHHHHHHHHHCCCBCHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHTT
T ss_pred             C-HHHHHHHHHhCCccCHHHHHHCCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhc
Confidence            9 9999999999999999999999999999998 889999999999999998  8999999999976543

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=100.00  E-value=5.8e-50  Score=337.28  Aligned_cols=219  Identities=21%  Similarity=0.307  Sum_probs=192.3

Q ss_pred             ceeeeeCCEEEEEEc-CCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEKHGDVFVLTLT-GSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln-~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++|||| ||+  +.|++|.+|+.+|.++++.++.|+. + +||+||.|+.||+|+|++++..... .....
T Consensus         7 i~~~~~~~v~~itln~rp~--~~Nal~~~~~~~L~~al~~~~~d~~-r-~vvltg~g~~F~aG~Dl~~~~~~~~-~~~~~   81 (261)
T 2gtr_A            7 IVVRKQDGFTHILLSTKSS--ENNSLNPEVMREVQSALSTAAADDS-K-LVLLSAVGSVFCCGLDFIYFIRRLT-DDRKR   81 (261)
T ss_dssp             EEEEEETTEEEEEECCSSS--STTEECHHHHHHHHHHHHHHHHSSC-S-CEEEEESSSCSBCEECHHHHHHHHH-HCHHH
T ss_pred             EEEEEeCCEEEEEECCCCc--cCCCCCHHHHHHHHHHHHHHhcCCC-E-EEEEecCCCccccccCchhhhhccc-cchhh
Confidence            678889999999999 697  8999999999999999999999874 9 9999999999999999998754211 01012


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                      ....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-  158 (261)
T 2gtr_A           82 ESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEK-AWFQTPYTTFGQ-SPDGCSTVMFPKIMG-  158 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETT-CEEECCTTTTTC-CCCTTHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCC-CEEeCchhccCC-CccchHHHHHHHHcC-
Confidence            22344556788899999999999999999999999999999999999987 999999999999 57665 579999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~  231 (243)
                      ..++++++++|++++|+||+++||||+|+|+ +++.+++.++++++++.+  +.+++.+|+.+++.....++
T Consensus       159 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~~~~~  227 (261)
T 2gtr_A          159 GASANEMLLSGRKLTAQEACGKGLVSQVFWP-GTFTQEVMVRIKELASCN--PVVLEESKALVRCNMKMELE  227 (261)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHTTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHTTTHHHHH
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCcccccCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhccccCHH
Confidence            9999999999999999999999999999998 889999999999999998  99999999999876544333

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=100.00  E-value=1.2e-49  Score=338.38  Aligned_cols=222  Identities=16%  Similarity=0.171  Sum_probs=191.6

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCc----c
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRT----G   77 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~----~   77 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.++++.++.|++++ +|||||.|++||+|.|++++.......    .
T Consensus        11 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~   87 (280)
T 1pjh_A           11 ISYRIEGPFFIIHLINPD--NLNALEGEDYIYLGELLELADRNRDVY-FTIIQSSGRFFSSGADFKGIAKAQGDDTNKYP   87 (280)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEECBTTBSBCCBCHHHHHC-------CCS
T ss_pred             eEEEEECCEEEEEECCCc--ccCCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCccCCcCHHHHhhcccccccchh
Confidence            678899999999999998  899999999999999999999999999 999999999999999999875321100    0


Q ss_pred             hH--HHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEe-cCccceeccccccCCCCChhh-HHHH
Q 026137           78 AR--ERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMR-RDKGVLYMSEVDIGLTLPDYC-AALF  153 (243)
Q Consensus        78 ~~--~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~-~~~a~f~~p~~~~G~~~p~~g-~~~l  153 (243)
                      ..  .....+...+++++.++.++||||||+|||+|+|||++|+++||+||++ ++ ++|++||+++|+ +|++| ++++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~-a~f~~pe~~lGl-~p~~g~~~~l  165 (280)
T 1pjh_A           88 SETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDK-VYLLYPFANLGL-ITEGGTTVSL  165 (280)
T ss_dssp             SHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTT-CEEECCHHHHTC-CCCTTHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCC-CEEeCchhhcCC-CCCccHHHHH
Confidence            00  0111223345688899999999999999999999999999999999999 77 999999999999 57666 5799


Q ss_pred             HHHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCCh----hHHHHHHH-HHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137          154 REKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSE----ERVAEASM-RLGKQLAGRKCTGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       154 ~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~----~~l~~~a~-~~a~~~~~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      ++++| ..++++++++|++++|+||+++||||+|+|+.    +++.+++. ++++++++.+  +.+++.+|+.+++....
T Consensus       166 ~r~vG-~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~~~~~~l~~~a~~~~a~~la~~~--~~a~~~~K~~l~~~~~~  242 (280)
T 1pjh_A          166 PLKFG-TNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLY--LPSCLGMKKLLKSNHID  242 (280)
T ss_dssp             HHHHC-HHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHTTTHH
T ss_pred             HHHhC-HHHHHHHHHhCCCCCHHHHHHCCCcceeeCCccccHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhHHH
Confidence            99999 99999999999999999999999999999984    37988885 9999999998  99999999999876654


Q ss_pred             HHh
Q 026137          229 VLG  231 (243)
Q Consensus       229 ~l~  231 (243)
                      .++
T Consensus       243 ~l~  245 (280)
T 1pjh_A          243 AFN  245 (280)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=100.00  E-value=1.4e-50  Score=343.47  Aligned_cols=215  Identities=16%  Similarity=0.261  Sum_probs=187.9

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.++++.++.|++++ +|||||.|+.||+|+|++++........ ...
T Consensus        11 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~~~~~~-~~~   86 (276)
T 2j5i_A           11 VKVEIEDGIAFVILNRPE--KRNAMSPTLNREMIDVLETLEQDPAAG-VLVLTGAGEAWTAGMDLKEYFREVDAGP-EIL   86 (276)
T ss_dssp             EEEEEETEEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHTCTTEE-EEEEEESTTCSBCCBCHHHHHHHHHHSC-TTH
T ss_pred             EEEEEeCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCCcCCcChhhHhhccccch-hHH
Confidence            567889999999999998  899999999999999999999999999 9999999999999999998753110000 111


Q ss_pred             HHHHHHHHHHH-HHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           82 VHYMFKSFRPL-VAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        82 ~~~~~~~~~~l-~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                      ...+.....++ +.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG-  163 (276)
T 2j5i_A           87 QEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADE-ATFGLSEINWGI-PPGNLVSKAMADTVG-  163 (276)
T ss_dssp             HHHHHHHHHHHHTTTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETT-CEEECGGGGGTC-CCCTTHHHHHHHHSC-
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCC-CEEeCcccccCC-CCcchHHHHHHHHhC-
Confidence            12222233443 67889999999999999999999999999999999987 899999999999 57665 579999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL  226 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ..++++++++|++++|+||+++||||+|+|+ +++.+++.++++++++.+  +.+++.+|+.+++..
T Consensus       164 ~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~  227 (276)
T 2j5i_A          164 HRQSLMYIMTGKTFGGQKAAEMGLVNESVPL-AQLREVTIELARNLLEKN--PVVLRAAKHGFKRCR  227 (276)
T ss_dssp             HHHHHHHHHHCCEEEHHHHHHHTSSSEEECH-HHHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCcccHHHHHHcCCccEeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999997 899999999999999998  999999999997653

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=100.00  E-value=1.6e-50  Score=342.67  Aligned_cols=213  Identities=17%  Similarity=0.266  Sum_probs=186.1

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec-----CC-CccccCCChhhHHHcCCC
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS-----HG-KFFSNGFDLAWAQAAGSR   75 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g-----~g-~~F~~G~D~~~~~~~~~~   75 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.++++.++.|++++ +|||||     .| ++||+|.|++++..... 
T Consensus        12 v~~~~~~~va~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~~-   87 (275)
T 4eml_A           12 ILYYKAGGIAKIVINRPH--KRNAFRPQTVFELYDAFCNAREDNRIG-VVLLTGAGPHSDGKYAFCSGGDQSVRGEGGY-   87 (275)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEECCCCTTSCCEEECCBCCC--------
T ss_pred             EEEEEECCEEEEEecCCC--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEeCCCcCcCCCCceeCCcChhhhhcccc-
Confidence            678899999999999997  899999999999999999999999999 999999     88 69999999998764211 


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHH
Q 026137           76 TGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFRE  155 (243)
Q Consensus        76 ~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~  155 (243)
                         ..........+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+.+|++|++++++
T Consensus        88 ---~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl~p~~~g~~~L~r  163 (275)
T 4eml_A           88 ---IDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADN-AIFGQTGPKVGSFDGGFGSSYLAR  163 (275)
T ss_dssp             ----------CCCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCHHHHTCCCCSTTTHHHHH
T ss_pred             ---cchhhHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC-CEEECcccccCCCCCccHHHHHHH
Confidence               1111111123577888999999999999999999999999999999999987 999999999998456667889999


Q ss_pred             HhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137          156 KVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL  226 (243)
Q Consensus       156 ~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ++| ..++++++++|++++|+||+++||||+|+|+ +++.+++.++|+++++.+  +.+++.+|+.+++..
T Consensus       164 ~vG-~~~A~~llltg~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~  230 (275)
T 4eml_A          164 IVG-QKKAREIWYLCRQYSAQEAERMGMVNTVVPV-DRLEEEGIQWAKEILSKS--PLAIRCLKAAFNADC  230 (275)
T ss_dssp             HHC-HHHHHHHHHHCCCEEHHHHHHHTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHTT
T ss_pred             HhH-HHHHHHHHHhCCCcCHHHHHHcCCccEeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhh
Confidence            999 9999999999999999999999999999998 889999999999999998  999999999998754

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=100.00  E-value=4.5e-50  Score=338.58  Aligned_cols=208  Identities=20%  Similarity=0.235  Sum_probs=188.8

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHH---HcCCCcch
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQ---AAGSRTGA   78 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~---~~~~~~~~   78 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|+.||+|.|++++.   .... .. 
T Consensus         7 v~~~~~~~v~~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~~~~-~~-   81 (266)
T 3fdu_A            7 LNANLEGGVLTLAINRPE--AKNALYGELYLWIAKALDEADQNKDVR-VVVLRGAEHDFTAGNDMKDFMGFVQNPN-AG-   81 (266)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSCSBCCBCHHHHHHHHHSCC-CS-
T ss_pred             EEEEEECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEECCCCCeECCcCHHHHhhhccccc-hh-
Confidence            678999999999999997  899999999999999999999999999 999999999999999999987   4211 10 


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHh
Q 026137           79 RERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKV  157 (243)
Q Consensus        79 ~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~  157 (243)
                      .    .....+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++
T Consensus        82 ~----~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~v  155 (266)
T 3fdu_A           82 P----AGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNT-ALFQIPFVSLGL-SPEGGASQLLVKQA  155 (266)
T ss_dssp             C----GGGSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTT-CEEECCTTTTTC-CCCTTHHHHHHHHH
T ss_pred             h----HHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCC-CEEECchhhhCC-CCcchHHHHHHHHh
Confidence            0    12334667888999999999999999999999999999999999987 999999999999 57766 57999999


Q ss_pred             CCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137          158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL  226 (243)
Q Consensus       158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~  226 (243)
                      | ..++++++++|++++|+||+++||||+|+|   ++.+++.++|+++++.+  +.+++.+|+.++...
T Consensus       156 G-~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~---~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~  218 (266)
T 3fdu_A          156 G-YHKAAELLFTAKKFNAETALQAGLVNEIVE---DAYATAQATAQHLTALP--LASLKQTKALMKHDL  218 (266)
T ss_dssp             C-HHHHHHHHHHCCEECHHHHHHTTSCSEECS---CHHHHHHHHHHHHHTSC--HHHHHHHHHHHTTTH
T ss_pred             C-HHHHHHHHHhCCCcCHHHHHHCCCHHHHHH---HHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhh
Confidence            9 999999999999999999999999999998   58999999999999998  999999999998753

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=100.00  E-value=1.2e-49  Score=335.19  Aligned_cols=215  Identities=18%  Similarity=0.251  Sum_probs=192.6

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecC-CCccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSH-GKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~-g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++||||||   +.|++|.+|+.+|.+++++++.|++++ +|||||. |++||+|.|++++... .    ..
T Consensus         7 v~~~~~~~v~~itlnrp---~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~~g~~F~aG~Dl~~~~~~-~----~~   77 (260)
T 1sg4_A            7 VEPDAGAGVAVMKFKNP---PVNSLSLEFLTELVISLEKLENDKSFR-GVILTSDRPGVFSAGLDLTEMCGR-S----PA   77 (260)
T ss_dssp             EEEETTTTEEEEEECCT---TTTEECHHHHHHHHHHHHHHHHCTTCC-EEEEEESSTEESCCEECGGGGSSC-C----HH
T ss_pred             EEEEecCCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEEcCCCCceEcCcCHHHHhcc-C----HH
Confidence            45677899999999999   679999999999999999999999999 9999999 7999999999987531 1    22


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEe--cCccceeccccccCCCCChhh-HHHHHHHh
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMR--RDKGVLYMSEVDIGLTLPDYC-AALFREKV  157 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~--~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~  157 (243)
                      ....+...+++++.++.++||||||+|||+|+|||++|+++||+||++  ++ ++|++||+++|+ +|++| ++++++++
T Consensus        78 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~v  155 (260)
T 1sg4_A           78 HYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPR-YCIGLNETQLGI-IAPFWLKDTLENTI  155 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTT-CCBSCCGGGGTC-CCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCC-CEEeCchhhhCC-CCchhHHHHHHHHh
Confidence            233455667889999999999999999999999999999999999999  66 899999999999 57665 57999999


Q ss_pred             CCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137          158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~  231 (243)
                      | ..++++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..+  +.+++.+|+.+++.....++
T Consensus       156 G-~~~a~~llltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~~~  225 (260)
T 1sg4_A          156 G-HRAAERALQLGLLFPPAEALQVGIVDQVVPE-EQVQSTALSAIAQWMAIP--DHARQLTKAMMRKATASRLV  225 (260)
T ss_dssp             C-HHHHHHHHHHTCCBCHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred             C-HHHHHHHHHcCCcCCHHHHHHcCCCCEecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhhccHH
Confidence            9 9999999999999999999999999999987 889999999999999998  89999999999876654443

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=100.00  E-value=8.1e-51  Score=346.24  Aligned_cols=214  Identities=16%  Similarity=0.237  Sum_probs=188.7

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++||||||   +.|++|.+|+.+|.+++++++.|++++ +|||||.| ++||+|.|++++...........
T Consensus        11 i~~~~~~~va~itlnrP---~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~   86 (287)
T 3gkb_A           11 LRVSSEHGVARIILDNP---PVNVIGATMMRELRTVLTTLADDSSVR-VIVFSSADPEFFLAHVDMRIGEKMDALQELAA   86 (287)
T ss_dssp             EEEEEETTEEEEEECCT---TTTCBCHHHHHHHHHHHHHHHTCTTCC-EEEEEESSSSEEECCBCTTGGGSHHHHHHHHH
T ss_pred             EEEEEECCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHHcCCCee-EEEEecCCCCceeCCcCHHHHhhccccchhhH
Confidence            67889999999999999   579999999999999999999999999 99999998 89999999998753100000000


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEec-CccceeccccccCCCCChhh-HHHHHHHhC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRR-DKGVLYMSEVDIGLTLPDYC-AALFREKVG  158 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~-~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g  158 (243)
                      ....+...+++++.++.++||||||+|||+|+|||++|+++||+||+++ + ++|++||+++|+ +|++| +++|++++|
T Consensus        87 ~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~-a~f~~pe~~lGl-~p~~g~~~~L~r~vG  164 (287)
T 3gkb_A           87 SAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAET-AGLGQIEALMGI-IPGGGGTQYLRGRVG  164 (287)
T ss_dssp             TSCTTCCTTHHHHHHHHHCSSEEEEEECSEEETHHHHHHHHSSEEEEETTT-CEEECGGGGGTS-CCCSSHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCC-cEEECcccccCC-CCCchHHHHHHHHhC
Confidence            0011234567889999999999999999999999999999999999998 6 999999999999 67765 679999999


Q ss_pred             CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137          159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD  225 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~  225 (243)
                       ..+|++++++|++++|+||+++||||+|+|+ +++.+++.++|+++++.+  +.+++.+|+.+++.
T Consensus       165 -~~~A~ellltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~lA~~la~~~--p~a~~~~K~~l~~~  227 (287)
T 3gkb_A          165 -RNRALEVVLTADLFDAETAASYGWINRALPA-DELDEYVDRVARNIAALP--DGVIEAAKRSLPAD  227 (287)
T ss_dssp             -HHHHHHHHHHCCCEEHHHHHHHTSSSEEECH-HHHHHHHHHHHHHHHTSC--TTHHHHHHHHSCCC
T ss_pred             -HHHHHHHHHcCCCCCHHHHHHCCCCcEEeCh-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcc
Confidence             9999999999999999999999999999997 899999999999999998  99999999999864

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=6.8e-50  Score=341.17  Aligned_cols=218  Identities=20%  Similarity=0.291  Sum_probs=191.9

Q ss_pred             ceeeeeCCEEEEEEc-CCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEKHGDVFVLTLT-GSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln-~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++|||| ||+  +.|++|.+|+.+|.++++.++.|+. + +|||||.|+.||+|+|++++..... .....
T Consensus        25 v~~~~~~~v~~itln~rp~--~~Nal~~~m~~~L~~al~~~~~d~~-r-~vVltg~G~~FcaG~Dl~~~~~~~~-~~~~~   99 (291)
T 2fbm_A           25 IVVKKEDGFTQIVLSTRST--EKNALNTEVIKEIVNALNSAAADDS-K-LVLFSAAGSVFCCGLDFGYFVKHLR-NNRNT   99 (291)
T ss_dssp             EEEEECSSEEEEEECCSSS--STTCBCHHHHHHHHHHHHHHHHSSC-S-EEEEEECSSCSBCCBCHHHHHHHHH-HCHHH
T ss_pred             EEEEEeCCEEEEEECCCCC--CCCCCCHHHHHHHHHHHHHHhcCCC-e-EEEEECCCCCccCCcCHHHHHhccc-ccchh
Confidence            567889999999999 697  8999999999999999999999875 9 9999999999999999998754210 01011


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                      ....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus       100 ~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~lGl-~p~~g~~~~L~r~vG-  176 (291)
T 2fbm_A          100 ASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEK-AWFQTPYTTFGQ-SPDGCSSITFPKMMG-  176 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETT-CEEECCHHHHTC-CCCTTHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCC-CEEECcHHhcCC-CCcccHHHHHHHHHh-
Confidence            22344456788899999999999999999999999999999999999987 899999999999 57665 579999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHH
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVL  230 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l  230 (243)
                      ..++++++++|++++|+||+++||||+|+|+ +++.+++.++|+++++.+  +.+++.+|+.+++.....+
T Consensus       177 ~~~A~el~ltg~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~~~l  244 (291)
T 2fbm_A          177 KASANEMLIAGRKLTAREACAKGLVSQVFLT-GTFTQEVMIQIKELASYN--PIVLEECKALVRCNIKLEL  244 (291)
T ss_dssp             HHHHHHHHTSCCEEEHHHHHHTTSCSEEECS-TTSHHHHHHHHHHHTTSC--HHHHHHHHHHHHTTTHHHH
T ss_pred             HHHHHHHHHcCCccCHHHHHHCCCcceecCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhccCH
Confidence            9999999999999999999999999999998 889999999999999998  9999999999987554433

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=100.00  E-value=6.2e-50  Score=339.90  Aligned_cols=216  Identities=16%  Similarity=0.250  Sum_probs=187.2

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|+.||+|.|++++............
T Consensus        22 v~~~~~~~v~~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~   98 (279)
T 3t3w_A           22 IDYDVSDRIATITLNRPE--AANAQNPELLDELDAAWTRAAEDNDVS-VIVLRANGKHFSAGHDLRGGGPVPDKLTLEFI   98 (279)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEECSSCSBCCBCCC--------CCHHHH
T ss_pred             EEEEEECCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHhcCCCeE-EEEEECCCCceeeccChHhhhhcccccchHHH
Confidence            678899999999999997  899999999999999999999999999 99999999999999999988653211111222


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSAT  161 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~  161 (243)
                      .......+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|.++..+ ++++| ..
T Consensus        99 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl-~~~~~~~~-~~~vG-~~  174 (279)
T 3t3w_A           99 YAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAED-ALFSDPVVLMDI-GGVEYHGH-TWELG-PR  174 (279)
T ss_dssp             HHHHHHHTHHHHHHHHHCSSCEEEEECSEEEGGGHHHHTTSSEEEEETT-CEEECCGGGGTC-SSCSSCCH-HHHHC-HH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeEhHHHHHHHHhCCEEEecCC-CEEeCcHHhcCC-CCchHHHH-HhhcC-HH
Confidence            2233455677889999999999999999999999999999999999987 899999999999 55544433 99999 99


Q ss_pred             HHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       162 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      ++++++++|++++|+||+++||||+|+|+ +++.+++.++|+++++.|  +.+++.+|+.+++...
T Consensus       175 ~A~~llltG~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  237 (279)
T 3t3w_A          175 KAKEILFTGRAMTAEEVAQTGMVNRVVPR-DRLDAETRALAGEIAKMP--PFALRQAKRAVNQTLD  237 (279)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCccCHHHHHHCCCCcEeeCh-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999998 889999999999999998  9999999999987653

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=100.00  E-value=4.2e-50  Score=339.80  Aligned_cols=212  Identities=23%  Similarity=0.301  Sum_probs=192.1

Q ss_pred             ceeeeeC-CEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEKHG-DVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~~~-~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.+++++ +|++||||||   +.|++|.+|+.+|.++++.++.|++++ +|||||.|++||+|.|++++.....   +..
T Consensus        15 v~~~~~~~~v~~itlnrp---~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~---~~~   87 (272)
T 3qk8_A           15 LRFEPGEHGVLNLVLDSP---GLNSVGPQMHRDLADVWPVIDRDPDVR-VVLVRGEGKAFSSGGSFELIDETIG---DYE   87 (272)
T ss_dssp             EEEEECSTTEEEEEECCH---HHHEECHHHHHHHHHHHHHHHHCTTCS-EEEEEESSSCSBCEECHHHHHHHHH---CHH
T ss_pred             EEEEEeCCCEEEEEECCC---CcCCCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCCeeCCcCHHHHhcccc---chH
Confidence            5677875 8999999999   699999999999999999999999999 9999999999999999999865311   122


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                      ....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| 
T Consensus        88 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG-  164 (272)
T 3qk8_A           88 GRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASAT-AKIIDGHTKLGV-AAGDHAAICWPLLVG-  164 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETT-CEEECCHHHHTS-CSCSSHHHHTHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC-CEEECchhccCC-CCCccHHHHHHHHhC-
Confidence            33455667889999999999999999999999999999999999999987 899999999999 57665 679999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL  226 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ..++++++++|++++|+||+++||||+|+|+ +++.+++.++|++++..+  +.+++.+|+.++...
T Consensus       165 ~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~  228 (272)
T 3qk8_A          165 MAKAKYYLLTCETLSGEEAERIGLVSTCVDD-DEVLPTATRLAENLAQGA--QNAIRWTKRSLNHWY  228 (272)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCCcEeeCH-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998 889999999999999998  999999999998543

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=7.5e-50  Score=337.02  Aligned_cols=213  Identities=24%  Similarity=0.301  Sum_probs=190.5

Q ss_pred             ceeee-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEK-HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.+++ +++|++||||||   +.|++|.+|+.+|.+++++++.|++++ +|||||.|+.||+|+|++ +..... .. ..
T Consensus        12 v~~~~~~~~v~~itlnrp---~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~-~~~~~~-~~-~~   84 (264)
T 1wz8_A           12 LAFAWPRPGVLEITFRGE---KLNAMPPALHRGLARVWRDLEAVEGVR-AVLLRGEGGVFSAGGSFG-LIEEMR-AS-HE   84 (264)
T ss_dssp             EEEEEEETTEEEEEECCS---GGGCBCHHHHHHHHHHHHHHTTCTTCS-EEEEEEGGGCCBCCBCHH-HHHHHH-HC-HH
T ss_pred             EEEEEccCCEEEEEeCCC---CcCCCCHHHHHHHHHHHHHHhcCCCee-EEEEECCCCCCcccCccc-cccccc-cc-hH
Confidence            56788 999999999999   699999999999999999999999999 999999999999999999 654100 00 11


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                      ....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG-  161 (264)
T 1wz8_A           85 ALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKG-TRLLDGHLRLGV-AAGDHAVLLWPLLVG-  161 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCHHHHTS-CCTTTHHHHTHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCC-CEEeCchhhcCc-CCCccHHHHHHHHhC-
Confidence            22234566788999999999999999999999999999999999999987 899999999999 57665 679999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      ..++++++++|++++|+||+++||||+|+|+ +++.+++.++++++++.+  +.++..+|+.+++...
T Consensus       162 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  226 (264)
T 1wz8_A          162 MAKAKYHLLLNEPLTGEEAERLGLVALAVED-EKVYEKALEVAERLAQGP--KEALHHTKHALNHWYR  226 (264)
T ss_dssp             HHHHHHHHHHTCCEEHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCceeecCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999997 889999999999999998  8999999999987654

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=100.00  E-value=2.5e-50  Score=338.14  Aligned_cols=208  Identities=21%  Similarity=0.319  Sum_probs=186.6

Q ss_pred             CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      .|.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +||+||.|+.||+|.|++++...        
T Consensus        10 ~v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vvltg~g~~F~aG~Dl~~~~~~--------   78 (256)
T 3pe8_A           10 VLLVDTTDRVRTLTLNRPQ--SRNALSAELRSTFFRALSDAQNDDDVD-VVIVTGADPVFCAGLDLKELGDT--------   78 (256)
T ss_dssp             SEEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCS-EEEEEESTTCSBCCBCTTTC-----------
T ss_pred             cEEEEEECCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHHhCCCeE-EEEEECCCCCccCCcCHHHHhhh--------
Confidence            3678899999999999997  889999999999999999999999999 99999999999999999987541        


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                            ..++.+..++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        79 ------~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG-  149 (256)
T 3pe8_A           79 ------TELPDISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASEN-AKFADTHARVGL-MPTWGLSVRLPQKVG-  149 (256)
T ss_dssp             ------------CCCCCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCHHHHTC-CCCSSHHHHHHHHHC-
T ss_pred             ------HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEcCC-CEEECchhhhCC-CCcccHHHHHHHhcC-
Confidence                  11234457788999999999999999999999999999999988 999999999999 57765 679999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~  231 (243)
                      ..++++++++|++++|+||+++||||+|+|+ +++.+++.++|+++++.+  +.+++.+|+.++......++
T Consensus       150 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~~~~~~~  218 (256)
T 3pe8_A          150 VGLARRMSLTGDYLSAQDALRAGLVTEVVAH-DDLLTAARRVAASIVGNN--QKAVRALLDSYHRIDALQTG  218 (256)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSCSCEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCCeEEeCH-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhhcCCHH
Confidence            9999999999999999999999999999998 889999999999999998  99999999999876655444

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=2.4e-49  Score=336.39  Aligned_cols=218  Identities=18%  Similarity=0.247  Sum_probs=188.8

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|+++  +|||||.|+.||+|+|++++..... ......
T Consensus        28 i~~~~~~~va~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~v--~vVltg~g~~FcaG~Dl~~~~~~~~-~~~~~~  102 (280)
T 2f6q_A           28 LVVTSEDGITKIMFNRPK--KKNAINTEMYHEIMRALKAASKDDSI--ITVLTGNGDYYSSGNDLTNFTDIPP-GGVEEK  102 (280)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHSSCS--EEEEEESTTCSBCCBCC----CCCT-THHHHH
T ss_pred             EEEEEECCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHHhhCCCE--EEEEeCCCCCcccCCCHHHHhhcCc-chhhHH
Confidence            567889999999999998  89999999999999999999999998  5999999999999999998764211 110111


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus       103 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG-~  179 (280)
T 2f6q_A          103 AKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDR-ATFHTPFSHLGQ-SPEGCSSYTFPKIMS-P  179 (280)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETT-CEEECCTGGGTC-CCCTTHHHHHHHHHC-H
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCC-cEEECchHhhCC-CCcccHHHHHHHHhC-H
Confidence            2234456788899999999999999999999999999999999999987 999999999999 57665 579999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVL  230 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l  230 (243)
                      .++++++++|++++|+||+++||||+|+|+ +++.+++.++++++++.+  +.+++.+|+.+++.....+
T Consensus       180 ~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~~  246 (280)
T 2f6q_A          180 AKATEMLIFGKKLTAGEACAQGLVTEVFPD-STFQKEVWTRLKAFAKLP--PNALRISKEVIRKREREKL  246 (280)
T ss_dssp             HHHHHHHTTCCCEEHHHHHHTTSCSEEECT-TTHHHHHHHHHHHHTTSC--HHHHHHHHHHHHGGGHHHH
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCcceEECH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhhcCH
Confidence            999999999999999999999999999998 889999999999999998  8999999999987654433

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=100.00  E-value=4.8e-50  Score=341.82  Aligned_cols=214  Identities=18%  Similarity=0.287  Sum_probs=186.5

Q ss_pred             ceeeee-CCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchH
Q 026137            2 CTSEKH-GDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGAR   79 (243)
Q Consensus         2 i~~~~~-~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~   79 (243)
                      |.++++ ++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.| ++||+|+|++++..... .  .
T Consensus        29 v~~~~~~~~va~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~G~~~FcaG~Dl~~~~~~~~-~--~  102 (289)
T 3t89_A           29 IRYEKSTDGIAKITINRPQ--VRNAFRPLTVKEMIQALADARYDDNIG-VIILTGAGDKAFCSGGDQKVRGDYGG-Y--K  102 (289)
T ss_dssp             EEEEEETTSEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSSEEECCBCCC------------
T ss_pred             EEEEEecCCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEEcCCCCCccCCCChhhhhcccc-c--h
Confidence            678888 999999999997  899999999999999999999999999 99999999 59999999998754211 0  1


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCC
Q 026137           80 ERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGS  159 (243)
Q Consensus        80 ~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~  159 (243)
                      .........+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+.+|++|++++++++| 
T Consensus       103 ~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl~~~~~g~~~L~r~vG-  180 (289)
T 3t89_A          103 DDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADN-AIFGQTGPKVGSFDGGWGASYMARIVG-  180 (289)
T ss_dssp             -------CTHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCHHHHTCCCCSTTTHHHHHHHC-
T ss_pred             hhhHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEeCC-CEEeccccccCCCCCchHHHHHHHhcC-
Confidence            111122234678889999999999999999999999999999999999987 999999999996467777889999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL  226 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ..++++++++|++++|+||+++||||+|+++ +++.+++.++|++++..+  +.+++.+|+.++...
T Consensus       181 ~~~A~~llltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~A~~la~~~--~~a~~~~K~~l~~~~  244 (289)
T 3t89_A          181 QKKAREIWFLCRQYDAKQALDMGLVNTVVPL-ADLEKETVRWCREMLQNS--PMALRCLKAALNADC  244 (289)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCcccHHHHHHCCCceEeeCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999998 889999999999999998  999999999998754

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=100.00  E-value=2.2e-49  Score=332.72  Aligned_cols=215  Identities=18%  Similarity=0.249  Sum_probs=193.8

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|+.||+|.|++++... .    ...
T Consensus        18 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~-~----~~~   89 (257)
T 1szo_A           18 IRLERDGGVLLVTVHTEG--KSLVWTSTAHDELAYCFHDIACDRENK-VVILTGTGPSFCNEIDFTSFNLG-T----PHD   89 (257)
T ss_dssp             EEEEEETTEEEEEECBTT--BSCEECHHHHHHHHHHHHHHHHCTTCC-EEEEECBTTBSBCEECGGGSCCS-S----HHH
T ss_pred             EEEEEECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEEcCCCccccCcCchhhhcC-C----HHH
Confidence            678899999999999998  899999999999999999999999999 99999999999999999987521 1    222


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceec-cccccCCCCChhh-HHHHHHHhCC
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYM-SEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~-p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                      ...+...+++++.++.++||||||+|||+|+| |++|+++||+||++++ ++|++ ||+++|+ +|++| ++++++++| 
T Consensus        90 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G-G~~LalacD~ria~~~-a~f~~~pe~~lGl-~p~~g~~~~l~r~vG-  165 (257)
T 1szo_A           90 WDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTN-APEIPVMSDIVLAAES-ATFQDGPHFPSGI-VPGDGAHVVWPHVLG-  165 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSCEEEEECSCBCS-STHHHHTSSEEEEETT-CEEECTTSGGGTC-CCTTTHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHcCCCcEEEEECCchHH-HHHHHHHCCEEEEeCC-CEEecCccccccc-CCCccHHHHHHHHcC-
Confidence            23344557788999999999999999999995 9999999999999988 89999 9999999 57766 578999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~  231 (243)
                      ..++++++++|++++|+||+++||||+|+|+ +++.+++.++++++++.+  +.+++.+|+.+++.....++
T Consensus       166 ~~~A~~llltG~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~  234 (257)
T 1szo_A          166 SNRGRYFLLTGQELDARTALDYGAVNEVLSE-QELLPRAWELARGIAEKP--LLARRYARKVLTRQLRRVME  234 (257)
T ss_dssp             HHHHHHHHHTTCEEEHHHHHHHTSCSEEECH-HHHHHHHHHHHHHHHTSC--HHHHHHHHHHHSHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCceEEeCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhhccHH
Confidence            9999999999999999999999999999987 899999999999999998  99999999999987766554

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=100.00  E-value=1.1e-49  Score=338.12  Aligned_cols=218  Identities=17%  Similarity=0.274  Sum_probs=191.8

Q ss_pred             ceeee-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCc---c
Q 026137            2 CTSEK-HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRT---G   77 (243)
Q Consensus         2 i~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~---~   77 (243)
                      |.+++ +++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|++||+|+|++++......+   .
T Consensus         5 v~~~~~~~~v~~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~   81 (275)
T 1dci_A            5 IQVTSAQKHVLHVQLNRPE--KRNAMNRAFWRELVECFQKISKDSDCR-AVVVSGAGKMFTSGIDLMDMASDILQPPGDD   81 (275)
T ss_dssp             EEEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHTCTTCC-EEEEEESTTCSBCCBCHHHHHHHHTSCCCSS
T ss_pred             EEEEEcCCCEEEEEECCCc--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCccCCcChHHHhhcccccccch
Confidence            56777 5789999999997  899999999999999999999999999 999999999999999999886521100   0


Q ss_pred             h---HHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHH
Q 026137           78 A---RERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALF  153 (243)
Q Consensus        78 ~---~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l  153 (243)
                      .   ......+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l  159 (275)
T 1dci_A           82 VARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQD-AFFQVKEVDVGL-AADVGTLQRL  159 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETT-CEEECCGGGGTS-CCCSSHHHHG
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCC-CEEeCcccccCC-CCCccHHHHH
Confidence            0   1122334456788899999999999999999999999999999999999987 899999999999 57665 5799


Q ss_pred             HHHhCCH-HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          154 REKVGSA-TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       154 ~~~~g~~-~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      ++++| . .++++++++|++++|+||+++||||+|+|+.+++.+++.++|+++++.+  +.++..+|+.+++...
T Consensus       160 ~r~vG-~~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~  231 (275)
T 1dci_A          160 PKVIG-NRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKS--PVAVQGSKINLIYSRD  231 (275)
T ss_dssp             GGTCS-CHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHH
T ss_pred             HHHhC-cHHHHHHHHHcCCCCCHHHHHHcCCcceecCChHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhcc
Confidence            99999 8 9999999999999999999999999999875789999999999999998  9999999999987543

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=100.00  E-value=2.3e-51  Score=345.22  Aligned_cols=216  Identities=19%  Similarity=0.206  Sum_probs=190.3

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|+.||+|.|++++..... .. .  
T Consensus        14 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~-~--   86 (258)
T 3lao_A           14 VTREQRGHLFLIGLDRAG--KRNAFDSAMLADLALAMGEYERSEESR-CAVLFAHGEHFTAGLDLMELAPKLA-AS-G--   86 (258)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSCSBCCBCHHHHGGGCB-TT-B--
T ss_pred             EEEEEECCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhhCCCcE-EEEEECCCCCeecCcCHHHHhhccc-hh-h--
Confidence            678899999999999997  889999999999999999999999999 9999999999999999999876422 11 0  


Q ss_pred             HHHHHHHHHHHHHHH-hcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           82 VHYMFKSFRPLVAAM-MDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l-~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                       ..+...+++++.++ .++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        87 -~~~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG-  162 (258)
T 3lao_A           87 -FRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARG-TRFAHLEVLRGI-PPLGGSTVRFPRAAG-  162 (258)
T ss_dssp             -CCCCTTCCCTTSCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETT-CEEECGGGGTCC-CSSCCCCSHHHHHHC-
T ss_pred             -HHHHHHHHHHHHHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCC-CEEeCcccccCC-CCCccHHHHHHHHhC-
Confidence             01122344566788 9999999999999999999999999999999987 999999999999 67766 579999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~  231 (243)
                      ..++++++++|++++|+||+++||||+|+|+ +++.+++.++|+++++.+  +.+++.+|+.+++.....++
T Consensus       163 ~~~A~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~~~  231 (258)
T 3lao_A          163 WTDAMRYILTGDEFDADEALRMRLLTEVVEP-GEELARALEYAERIARAA--PLAVRAALQSAFQGRDEGDD  231 (258)
T ss_dssp             HHHHHHHHTTCCCEEHHHHHHTTSCSEEECT-TCHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCCcEeeCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhcCCHH
Confidence            9999999999999999999999999999998 889999999999999998  99999999999876554443

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=100.00  E-value=5.8e-50  Score=337.87  Aligned_cols=210  Identities=18%  Similarity=0.207  Sum_probs=183.6

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|++||+|.|++ ...    .  .. 
T Consensus        11 v~~~~~~~v~~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~-~~~----~--~~-   79 (265)
T 3rsi_A           11 LLVERDGPVVILTMNRPH--RRNALSTNMVSQFAAAWDEIDHDDGIR-AAILTGAGSAYCVGGDLS-DGW----M--VR-   79 (265)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCCCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCSEECC-----------------
T ss_pred             EEEEEECCEEEEEEcCcc--cccCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCcccCcCCC-ccc----c--cc-
Confidence            678899999999999997  899999999999999999999999999 999999999999999998 221    1  11 


Q ss_pred             HHHHHHHHHH-HHHHH-h--cCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHH
Q 026137           82 VHYMFKSFRP-LVAAM-M--DLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREK  156 (243)
Q Consensus        82 ~~~~~~~~~~-l~~~l-~--~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~  156 (243)
                      ...+....++ ++.++ .  ++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++++++
T Consensus        80 ~~~~~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~  157 (265)
T 3rsi_A           80 DGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEH-ATFGLPEVQRGL-VPGAGSMVRLKRQ  157 (265)
T ss_dssp             -----CCCHHHHHHHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETT-CEEECGGGGGTC-CCTTTHHHHHHHH
T ss_pred             hHHHHHHhHHHHHHHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCC-CEEECchhccCC-CCCccHHHHHHHH
Confidence            1123334456 88888 8  999999999999999999999999999999987 999999999999 57665 6799999


Q ss_pred             hCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137          157 VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      +| ..++++++++|++++|+||+++||||+|+|+ +++.+++.++|++++..+  +.+++.+|+.+++....
T Consensus       158 vG-~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~  225 (265)
T 3rsi_A          158 IP-YTKAMEMILTGEPLTAFEAYHFGLVGHVVPA-GTALDKARSLADRIVRNG--PLAVRNAKEAIVRSGWL  225 (265)
T ss_dssp             SC-HHHHHHHHHHCCCEEHHHHHHTTSCSEEEST-TCHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHTTC
T ss_pred             hC-HHHHHHHHHcCCCCCHHHHHHCCCccEecCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhcC
Confidence            99 9999999999999999999999999999998 889999999999999998  99999999999876443

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=100.00  E-value=9.6e-51  Score=347.51  Aligned_cols=221  Identities=20%  Similarity=0.235  Sum_probs=181.7

Q ss_pred             ceeeeeC-CEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchH-
Q 026137            2 CTSEKHG-DVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGAR-   79 (243)
Q Consensus         2 i~~~~~~-~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~-   79 (243)
                      |.+++++ +|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|+.||+|.|++++.......... 
T Consensus        31 v~~~~~~~~Va~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~  107 (298)
T 3qre_A           31 VLYEATPGGVAIITFNRAD--RLNAWGPDLAAGFYAAIDRAEADPGIR-VIVLTGRGRGFCAGAYLGSADAAAGYDKTMA  107 (298)
T ss_dssp             EEEEECTTSEEEEEECCGG--GTTCCCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCSEECC----------------
T ss_pred             EEEEEeCCCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCcccCcCHHHHhhccccccccc
Confidence            6788889 99999999998  899999999999999999999999999 999999999999999999886410000000 


Q ss_pred             --HHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHH
Q 026137           80 --ERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREK  156 (243)
Q Consensus        80 --~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~  156 (243)
                        .....+....++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|+++
T Consensus       108 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~  185 (298)
T 3qre_A          108 KAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAG-AKFAAVFARRGL-IAEFGISWILPRL  185 (298)
T ss_dssp             -------------CCTTGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETT-CEEECCCCHHHH-HCTTSHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCC-CEEECcccccCC-CcchhHHHHHHHh
Confidence              011222334566778899999999999999999999999999999999987 999999999999 57665 6799999


Q ss_pred             hCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcC-CCCcchHHHHHHhhchhHHHHHh
Q 026137          157 VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR-KCTGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~-~~~~~~~~~~K~~l~~~~~~~l~  231 (243)
                      +| ..++++++++|++++|+||+++||||+|+|+ +++.+++.++|+++++. +  +.+++.+|+.+++.....++
T Consensus       186 vG-~~~A~ellltg~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~A~~la~~~~--p~a~~~~K~~l~~~~~~~l~  257 (298)
T 3qre_A          186 TS-WAVALDLLLSGRTFLAEEAAQLGLVKEVVTP-EQLMPRALEYAEDIARYCS--PSSMAVIKRQVYGDATRDVV  257 (298)
T ss_dssp             SC-HHHHHHHHHHCCEEEHHHHHHTTSCSEEECG-GGHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHGGGGC---
T ss_pred             cC-HHHHHHHHHcCCCCCHHHHHHcCCCeEecCH-HHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHhhhcCCHH
Confidence            99 9999999999999999999999999999998 88999999999999998 8  89999999999876554443

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=100.00  E-value=3.2e-51  Score=344.74  Aligned_cols=214  Identities=21%  Similarity=0.242  Sum_probs=188.4

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|+.||+|.|++++..... .. .. 
T Consensus        13 v~~~~~~~va~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~-~~-   86 (262)
T 3r9q_A           13 VRVEKAGPVTTVILNRPH--ARNAVDGPTAAALLAAFTEFDADPEAS-VAVLWGDNGTFCAGADLKAMGTDRG-NE-LH-   86 (262)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCSBCCBCTTTTTSTTS-CC-CC-
T ss_pred             EEEEEECCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCccCCcCHHHHhccCh-hh-HH-
Confidence            678899999999999998  899999999999999999999999999 9999999999999999998865321 00 00 


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                          ......++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus        87 ----~~~~~~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG-~  159 (262)
T 3r9q_A           87 ----PHGPGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEED-AVLGVFCRRWGV-PLIDGGTIRLPRLIG-H  159 (262)
T ss_dssp             ----TTSSCTTSSTTCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECTHHHHTC-CCCSSHHHHHHHHHC-H
T ss_pred             ----HhhhhHHHHHHHhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCC-CEEecchhccCC-CCCccHHHHHHHHhC-H
Confidence                011223344567999999999999999999999999999999988 899999999999 57665 679999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~  231 (243)
                      .++++++++|++++|+||+++||||+|+|+ +++.+++.++|+++++.+  +.+++.+|+.+++.....++
T Consensus       160 ~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~~~~~l~  227 (262)
T 3r9q_A          160 SRAMDLILTGRPVHANEALDIGLVNRVVAR-GQAREAAETLAAEIAAFP--QQCVRADRDSAIAQWGMAEE  227 (262)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHTTSCSEEECT-TCHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHTTTSCHH
T ss_pred             HHHHHHHHcCCcCCHHHHHHcCCccEecCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhcCCHH
Confidence            999999999999999999999999999998 889999999999999998  99999999999876544333

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=100.00  E-value=5.6e-50  Score=333.89  Aligned_cols=211  Identities=20%  Similarity=0.359  Sum_probs=189.5

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      ..++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +||+||.|+.||+|.|++++.....  .  ..
T Consensus         5 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~--~--~~   77 (243)
T 2q35_A            5 QLTELGNGVVQITMKDES--SRNGFSPSIVEGLRHCFSVVAQNQQYK-VVILTGYGNYFSSGASKEFLIRKTR--G--EV   77 (243)
T ss_dssp             EEEEEETTEEEEEECCGG--GTSBSCHHHHHHHHHHHHHHHHCTTCC-EEEEECBTTEEECBSCHHHHHHHHT--T--CC
T ss_pred             EEEEeeCCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCeeCCCChHHHhhccc--h--hh
Confidence            356789999999999998  899999999999999999999999999 9999999999999999998764211  0  00


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                            ..++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus        78 ------~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-~  148 (243)
T 2q35_A           78 ------EVLDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQE-SVYATNFMKYGF-TPVGATSLILREKLG-S  148 (243)
T ss_dssp             ------CCCCCHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEESS-SEEECCHHHHTS-CCCSSHHHHHHHHHC-H
T ss_pred             ------HHHHHHHHHHhCCCCEEEEEcCccccchHHHHHhCCEEEEeCC-CEEECCccccCC-CCcchHHHHHHHHhC-H
Confidence                  1256778899999999999999999999999999999999987 899999999999 67776 579999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~  231 (243)
                      .++++++++|++++|+||+++||||+++|+ +++.+++.++++++++.+  +.+++.+|+.+++.....++
T Consensus       149 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~~~  216 (243)
T 2q35_A          149 ELAQEMIYTGENYRGKELAERGIPFPVVSR-QDVLNYAQQLGQKIAKSP--RLSLVALKQHLSADIKAKFP  216 (243)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHTTCSSCEECH-HHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCHHHHHHcCCCCEecCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhhcCHH
Confidence            999999999999999999999999999997 899999999999999998  89999999999876654443

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=100.00  E-value=3e-49  Score=333.95  Aligned_cols=218  Identities=22%  Similarity=0.299  Sum_probs=186.9

Q ss_pred             ceee----eeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcc
Q 026137            2 CTSE----KHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTG   77 (243)
Q Consensus         2 i~~~----~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~   77 (243)
                      +.++    .+++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|+.||+|.|++++........
T Consensus         9 v~~~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~~~~   85 (267)
T 3oc7_A            9 VDYAGPAATGGPVARLTLNSPH--NRNALSTALVSQLHQGLRDASSDPAVR-VVVLAHTGGTFCAGADLSEAGSGGSPSS   85 (267)
T ss_dssp             EEEECHHHHSSSEEEEEECCGG--GTSCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEECSSEEECCBC-----------C
T ss_pred             cCCCCccceeCCEEEEEecCCC--ccCCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCceeCCcCchhhhhccCchh
Confidence            4566    78999999999997  889999999999999999999999999 9999999999999999998862111011


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHH
Q 026137           78 ARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREK  156 (243)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~  156 (243)
                      .......+.+.+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++++ +
T Consensus        86 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~-~  162 (267)
T 3oc7_A           86 AYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPR-SSFALTEARIGV-APAIISLTLLP-K  162 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTT-CEEECCGGGGTC-CCTTTHHHHTT-T
T ss_pred             hhhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCC-CEEeCcccccCC-CcchhHHHHHH-H
Confidence            11112346677889999999999999999999999999999999999999987 999999999999 67776 46788 9


Q ss_pred             hCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137          157 VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~  231 (243)
                      +| ..++++++++|++++|+||+++||||+|  . +++.+++.++++++++.+  +.+++.+|+.+++.....++
T Consensus       163 vG-~~~A~~l~ltg~~~~a~eA~~~GLv~~v--~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~  231 (267)
T 3oc7_A          163 LS-ARAAARYYLTGEKFDARRAEEIGLITMA--A-EDLDAAIDQLVTDVGRGS--PQGLAASKALTTAAVLERFD  231 (267)
T ss_dssp             SC-HHHHHHHHHHCCCBCHHHHHHHTSSSEE--C-SSHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred             hC-HHHHHHHHHcCCccCHHHHHHCCChhhh--h-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhcCCHH
Confidence            99 9999999999999999999999999999  4 679999999999999998  99999999999887655444

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=100.00  E-value=9.4e-50  Score=336.54  Aligned_cols=209  Identities=16%  Similarity=0.184  Sum_probs=185.9

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.| +++ +|||||.|+.||+|.|++++........   .
T Consensus         9 i~~~~~~~v~~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d-~vr-~vVltg~g~~F~aG~Dl~~~~~~~~~~~---~   81 (267)
T 3hp0_A            9 IKVRFQASVCYITFHRPE--ANNTINDTLIEECLQVLNQCETS-TVT-VVVLEGLPEVFCFGADFQEIYQEMKRGR---K   81 (267)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCSHHHHHHHHHHHHHHHS-SCC-EEEEECCSSCSBCCBCHHHHHHTTTTTC---C
T ss_pred             EEEEEECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHhcC-CCE-EEEEECCCCceecCcCHHHHHhcccChH---H
Confidence            678899999999999997  89999999999999999999986 699 9999999999999999999876321010   0


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSAT  161 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~  161 (243)
                      ...+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|++++++++| ..
T Consensus        82 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~l~r~vG-~~  158 (267)
T 3hp0_A           82 QASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQT-ASFSLSELLFGL-YPACVLPFLIRRIG-RQ  158 (267)
T ss_dssp             SCCCCHHHHHHHHHHHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTT-CEEECCGGGGTC-CCTTTHHHHHHHHC-HH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCC-CEEECchhccCc-CchhHHHHHHHHhC-HH
Confidence            1122345678889999999999999999999999999999999999987 999999999999 78888889999999 99


Q ss_pred             HHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137          162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD  225 (243)
Q Consensus       162 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~  225 (243)
                      +|++++++|++++|+||+++||||+|+++.+   +.+.++++++++.+  +.+++.+|+.++..
T Consensus       159 ~A~ellltg~~i~A~eA~~~GLV~~vv~~~~---~~~~~~a~~la~~~--p~a~~~~K~~l~~~  217 (267)
T 3hp0_A          159 KAHYMTLMTKPISVQEASEWGLIDAFDAESD---VLLRKHLLRLRRLN--KKGIAHYKQFMSSL  217 (267)
T ss_dssp             HHHHHHHHCCCBCHHHHHHHTSSSCBCSCTT---HHHHHHHHHHTTSC--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCcceecCCHH---HHHHHHHHHHHhCC--HHHHHHHHHHHHhc
Confidence            9999999999999999999999999998733   34778999999998  99999999998764

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=1.4e-50  Score=341.71  Aligned_cols=216  Identities=18%  Similarity=0.213  Sum_probs=190.5

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|+.||+|.|++++..... ..    
T Consensus        11 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~----   82 (265)
T 3swx_A           11 LRIRRDGYVLVIGLNRPA--KRNAFDKTMLEELALALGEYETDTDLR-AAVLYGEGPLFTAGLDLASVAAEIQ-GG----   82 (265)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCSBCCBCHHHHHHHHC-------
T ss_pred             EEEEEECCEEEEEECCCc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCCcccCcChHHHhhccc-ch----
Confidence            678899999999999997  889999999999999999999999999 9999999999999999999865311 00    


Q ss_pred             HHHHHHHHHHHHHHH-hcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           82 VHYMFKSFRPLVAAM-MDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l-~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                      ...+...+.+++.++ .++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        83 ~~~~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG-  159 (265)
T 3swx_A           83 ASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADET-ATFAQLEVNRGI-YPFGGATIRFPRTAG-  159 (265)
T ss_dssp             CCCCCTTCCCTTCCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECGGGGGTS-CCCSSHHHHHHHHHC-
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCC-CEEECccccccc-CCCccHHHHHHHHhh-
Confidence            001112234456677 8999999999999999999999999999999987 999999999999 67665 578999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~  231 (243)
                      ..++++++++|++++|+||+++||||+|+|+ +++.+++.++|+++++.+  +.++..+|+.+++.....++
T Consensus       160 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~~~~~  228 (265)
T 3swx_A          160 WGNAMRWMLTADTFDAVEAHRIGIVQEIVPV-GEHVDTAIAIAQTIARQA--PLGVQATLRNARLAVREGDA  228 (265)
T ss_dssp             HHHHHHHHTTCCCEEHHHHHHTTSCSEEEST-TCHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHcCCcCCHHHHHHcCCCCEecCh-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhcCCHH
Confidence            9999999999999999999999999999998 889999999999999998  99999999999876554443

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=100.00  E-value=1.3e-49  Score=345.52  Aligned_cols=215  Identities=20%  Similarity=0.243  Sum_probs=187.3

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcch---
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGA---   78 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~---   78 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.++++.++.|++++ +|||||.|+.||+|.|++++.........   
T Consensus        37 i~~e~~~~Va~ItLnrP~--~~NAl~~~m~~eL~~al~~~~~d~~vr-vvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~  113 (333)
T 3njd_A           37 MTYEVTDRVARITFNRPE--KGNAIVADTPLELSALVERADLDPDVH-VILVSGRGEGFCAGFDLSAYAEGSSSAGGGSP  113 (333)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCTHHHHHHHHHHHHHHHCTTCC-EEEEEESTTSSBCCBC---------------C
T ss_pred             EEEEEECCEEEEEeCCCC--ccCCCCHHHHHHHHHHHHHHhhCCCcE-EEEEECCCCceecCcCHHHHhhcccccccccc
Confidence            678999999999999998  899999999999999999999999999 99999999999999999988653210000   


Q ss_pred             ----------------------HHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceec
Q 026137           79 ----------------------RERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYM  136 (243)
Q Consensus        79 ----------------------~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~  136 (243)
                                            ......+...+++++.+|.++||||||+|||+|+|||++|+++||+|||+++ ++|++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~-a~f~~  192 (333)
T 3njd_A          114 YEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAAD-AKIGY  192 (333)
T ss_dssp             CTTSTTCHHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTT-CEEEC
T ss_pred             cccccccccccccccccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECCC-Ceeec
Confidence                                  0012245567788889999999999999999999999999999999999987 99999


Q ss_pred             cccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHH
Q 026137          137 SEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYA  216 (243)
Q Consensus       137 p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~  216 (243)
                      ||+++|+ +|++|  ++++++| ..++++++++|++|+|+||+++||||+|||+ +++.+++.++|++|++.|  +.++.
T Consensus       193 pe~~lG~-~P~~g--~l~~~vG-~~~A~ellltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~lA~~ia~~~--~~al~  265 (333)
T 3njd_A          193 PPMRVWG-VPAAG--LWAHRLG-DQRAKRLLFTGDCITGAQAAEWGLAVEAPDP-ADLDARTERLVERIAAMP--VNQLI  265 (333)
T ss_dssp             GGGGTTC-CCTTC--CHHHHHC-HHHHHHHHTTCCEEEHHHHHHTTSSSBCCCG-GGHHHHHHHHHHHHHTSC--HHHHH
T ss_pred             hhhceec-cCHHH--HHHHHHH-HHHHHHHHhcCCCCCHHHHHHCCCccEecCh-HHHHHHHHHHHHHHHcCC--HHHHH
Confidence            9999999 68776  6899999 9999999999999999999999999999998 899999999999999998  99999


Q ss_pred             HHHHhhchhHH
Q 026137          217 EIRKSLYPDLC  227 (243)
Q Consensus       217 ~~K~~l~~~~~  227 (243)
                      .+|+.+++.+.
T Consensus       266 ~~K~~l~~~~~  276 (333)
T 3njd_A          266 MAKLACNTALL  276 (333)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988754

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=100.00  E-value=1.1e-49  Score=335.30  Aligned_cols=216  Identities=14%  Similarity=0.207  Sum_probs=193.6

Q ss_pred             ceeeeeC-CEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEKHG-DVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~~~-~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.+++++ +|++|+||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|+.||+|+|++++.....    ..
T Consensus        25 i~~~~~~~~Va~ItLnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~~~----~~   97 (263)
T 2j5g_A           25 LHFHRDENGILEVRMHTNG--SSLVFTGKTHREFPDAFYDISRDRDNR-VVILTGSGDAWMAEIDFPSLGDVTN----PR   97 (263)
T ss_dssp             EEEEECTTCEEEEEECBTT--BSCEECHHHHHHHHHHHHHHHHCTTCC-EEEEECBTTEEECEECSGGGCCTTS----HH
T ss_pred             EEEEEcCCCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEECCCCCcccCcCHHHHhccCC----HH
Confidence            5678888 99999999998  899999999999999999999999999 9999999999999999998753211    22


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceec-cccccCCCCChhh-HHHHHHHhC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYM-SEVDIGLTLPDYC-AALFREKVG  158 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~-p~~~~G~~~p~~g-~~~l~~~~g  158 (243)
                      ....+...+++++.++.++||||||+|||+|+ ||++|+++||+||++++ ++|++ ||+++|+ +|++| ++++++++|
T Consensus        98 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~-a~f~~~pe~~lGl-~p~~g~~~~L~r~vG  174 (263)
T 2j5g_A           98 EWDKTYWEGKKVLQNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASEN-TVFQDMPHLNAGI-VPGDGVHILWPLALG  174 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETT-CEECCCHHHHHTC-CCCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCC-CEEecCccccccc-CCCccHHHHHHHHcC
Confidence            22334455778899999999999999999999 59999999999999988 89999 9999999 57766 579999999


Q ss_pred             CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137          159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~  231 (243)
                       ..++++++++|++++|+||+++||||+|+|+ +++.+++.++++++++.+  +.+++.+|+.+++.....++
T Consensus       175 -~~~A~~llltG~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~  243 (263)
T 2j5g_A          175 -LYRGRYFLFTQEKLTAQQAYELNVVHEVLPQ-SKLMERAWEIARTLAKQP--TLNLRYTRVALTQRLKRLVN  243 (263)
T ss_dssp             -HHHHHHHHHTTCCEEHHHHHHTTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHcCCCCCHHHHHHCCCccEecCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhhccHH
Confidence             9999999999999999999999999999998 889999999999999998  99999999999887665554

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=100.00  E-value=3.6e-50  Score=341.34  Aligned_cols=213  Identities=21%  Similarity=0.249  Sum_probs=178.1

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|+.||+|.|++++.....    ...
T Consensus        22 v~~~~~~~v~~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~----~~~   94 (278)
T 4f47_A           22 ALVEQRGHTLIVTMNRPS--RRNALSGEMMQIMVEAWDRVDNDPDIR-CCILTGAGGYFCAGMDLKAATKKPP----GDS   94 (278)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCCCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCCC--------------------
T ss_pred             eEEEEECCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhcCCCee-EEEEECCCCcccCCcChHhhhccch----hhh
Confidence            678899999999999998  899999999999999999999999999 9999999999999999999865311    111


Q ss_pred             HHHHHHHHHHHHHHHh---cCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHh
Q 026137           82 VHYMFKSFRPLVAAMM---DLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKV  157 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~---~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~  157 (243)
                      .. .....++++..+.   ++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++
T Consensus        95 ~~-~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~v  171 (278)
T 4f47_A           95 FK-DGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAES-AKFGISEAKWSL-YPMGGSAVRLVRQI  171 (278)
T ss_dssp             -------CTTCBTTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETT-CEEECCGGGGTC-CCTTSHHHHHHHHS
T ss_pred             HH-HHHHHHHHHHHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCC-CEEECcccccCC-CCCccHHHHHHHHh
Confidence            11 1112344556666   999999999999999999999999999999987 899999999999 67666 67999999


Q ss_pred             CCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137          158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      | ..++++++++|++++|+||+++||||+|+|+ +++.+++.++|+++++.+  +.++..+|+.+++....
T Consensus       172 G-~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~  238 (278)
T 4f47_A          172 P-YTVACDLLLTGRHITAAEAKEMGLVGHVVPD-GQALTKALEIAEIIAANG--PLAVQAILRTIRETEGM  238 (278)
T ss_dssp             C-HHHHHHHHHHCCCEEHHHHHHTTSCSEEECT-TCHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHTTTS
T ss_pred             C-HHHHHHHHHcCCcCCHHHHHHCCCceEeeCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhccC
Confidence            9 9999999999999999999999999999998 889999999999999998  99999999999876543

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=100.00  E-value=1.2e-50  Score=343.75  Aligned_cols=218  Identities=17%  Similarity=0.231  Sum_probs=185.3

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcch--H
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGA--R   79 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~--~   79 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.++++.++.|++++ +|||||.|++||+|.|++++........+  .
T Consensus        13 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   89 (274)
T 3tlf_A           13 IKYEVDGHTATITLNRPD--ALNALSPHMITELRAAYHEAENDDRVW-LLVVTGTGRAFCSGADVKEIPEDGKVIYERPY   89 (274)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTEEECCBC--------------CT
T ss_pred             eEEEEECCEEEEEECCcc--ccCCCCHHHHHHHHHHHHHHhcCCCeE-EEEEeCCCCCcccCcCHHHHhhccccccccch
Confidence            678899999999999997  899999999999999999999999999 99999999999999999988653110000  0


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCC
Q 026137           80 ERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGS  159 (243)
Q Consensus        80 ~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~  159 (243)
                      .........+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|+++++++++++| 
T Consensus        90 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~g~~~~L~r~vG-  166 (274)
T 3tlf_A           90 LSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQ-ATFFDPHVSIGL-VAGRELVRVSRVLP-  166 (274)
T ss_dssp             TCSGGGGSCCCTTCCCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETT-CEEECCGGGGTC-CCCHHHHHHTTTSC-
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC-CEEECcccccCc-ccchHHHHHHHHhC-
Confidence            000111224566788899999999999999999999999999999999987 899999999999 67555789999999 


Q ss_pred             HHHHHHHHhcCc--CCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137          160 ATARRDVLLRAK--KIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       160 ~~~a~~l~l~g~--~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      ..++++++++|+  +++|+||+++||||+|+|+ +++++++.++|+++++.+  +.+++.+|+.++.....
T Consensus       167 ~~~A~~l~ltg~~~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~  234 (274)
T 3tlf_A          167 RSIALRMALMGKHERMSAQRAYELGLISEIVEH-DRLLERAHEIADIVNSNA--PLAVRGTRLAILKGLNV  234 (274)
T ss_dssp             HHHHHHHHHHGGGCCEEHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHcCCCCccCHHHHHHCCCCCeecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHhcC
Confidence            999999999999  9999999999999999998 889999999999999998  99999999999876543

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=100.00  E-value=8.9e-51  Score=342.80  Aligned_cols=214  Identities=23%  Similarity=0.326  Sum_probs=191.2

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.++++.++.|++++ +|||||.|+.||+|.|++++..... ..... 
T Consensus         9 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~-   83 (265)
T 3qxz_A            9 LHEEIRDGVAVLTLHGPS--TRNSFTVELGRQLGAAYQRLDDDPAVR-VIVLTGAPPAFCSGAQISAAAETFA-APRNP-   83 (265)
T ss_dssp             EEEEEETTEEEEEEECGG--GTSCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTEEECCBCSTTCTTCCC-CCCSS-
T ss_pred             EEEEEECCEEEEEEcCCc--cCCCCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCccccCcChHHHhhccc-hhHHH-
Confidence            678899999999999997  889999999999999999999999999 9999999999999999998765321 11001 


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                         +... ++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus        84 ---~~~~-~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG-~  156 (265)
T 3qxz_A           84 ---DFSA-SPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEE-GRYAIPQVRFGV-APDALAHWTLPRLVG-T  156 (265)
T ss_dssp             ---CCCS-CCSSSCGGGSSSCEEEEECSEEETHHHHHHTTSSEEEEETT-CCEECCGGGGTS-CCCTTHHHHTHHHHH-H
T ss_pred             ---HHHH-HHHHHHHHhCCCCEEEEECCEEehHhHHHHHHCCEEEEcCC-CEEECcccccCc-CCCccHHHHHHHHhC-H
Confidence               1122 56778899999999999999999999999999999999987 899999999999 57665 579999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcC-CCCcchHHHHHHhhchhHHHHH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR-KCTGEVYAEIRKSLYPDLCGVL  230 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~-~~~~~~~~~~K~~l~~~~~~~l  230 (243)
                      .++++++++|++++|+||+++||||+|+|+ +++++++.++|+++++. +  +.+++.+|+.+++.....+
T Consensus       157 ~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~~--p~a~~~~K~~l~~~~~~~l  224 (265)
T 3qxz_A          157 AVAAELLLTGASFSAQRAVETGLANRCLPA-GKVLGAALRMAHDIATNVA--PESAALTKRLLWDAQMTGM  224 (265)
T ss_dssp             HHHHHHHHHCCCBCHHHHHHHTSCSEEECH-HHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHcCCCcCHHHHHHCCCccEeeCH-HHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHhhcCCH
Confidence            999999999999999999999999999997 89999999999999998 8  9999999999987665443

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=100.00  E-value=3.3e-49  Score=336.62  Aligned_cols=211  Identities=19%  Similarity=0.259  Sum_probs=189.0

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++||||||   +.|++|.+|+.+|.++++.++.|++++ +|||||.| ++||+|.|++++....     ..
T Consensus        10 v~~~~~~~Va~itlnrP---~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~G~~ff~~G~Dl~~~~~~~-----~~   80 (289)
T 3h0u_A           10 IKARLDGTVLSATFNAP---PMNLIGPEVVRDLVALLEELAHPTAPR-VVIFDSADADFFFPHVDMTKVPEYT-----AE   80 (289)
T ss_dssp             EEEEEETTEEEEEECCT---TTCCBCHHHHHHHHHHHHHTTSTTSCS-EEEEEECSSSEEECSBCTTCHHHHH-----HH
T ss_pred             EEEEEECCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCceeCCcCHHHHhhcC-----cc
Confidence            67889999999999999   679999999999999999999999999 99999998 4567778999886521     11


Q ss_pred             HHH---HHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHH
Q 026137           81 RVH---YMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREK  156 (243)
Q Consensus        81 ~~~---~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~  156 (243)
                      ...   .+...+++++.++.++||||||+|||+|+|||++|+++||+||+++++++|++||+++|+ +|++| +++|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl-~p~~g~~~~L~r~  159 (289)
T 3h0u_A           81 AAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGA-PPGAGAIQHLTRL  159 (289)
T ss_dssp             HHTTSSTTCCSHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTS-CCCSSHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCC-CCCccHHHHHHHH
Confidence            111   234567889999999999999999999999999999999999999865899999999999 57665 6799999


Q ss_pred             hCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137          157 VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL  226 (243)
Q Consensus       157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~  226 (243)
                      +| ..++++++++|++++|+||+++||||+|+|+ +++.+++.++|+++++.|  +.+++.+|+.+++..
T Consensus       160 vG-~~~A~ellltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~lA~~la~~~--p~a~~~~K~~l~~~~  225 (289)
T 3h0u_A          160 LG-RGRALEAVLTSSDFDADLAERYGWVNRAVPD-AELDEFVAGIAARMSGFP--RDALIAAKSAINAIS  225 (289)
T ss_dssp             HC-HHHHHHHHHHCCCEEHHHHHHHTSSSEEECH-HHHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHH
T ss_pred             hC-HHHHHHHHHcCCCCCHHHHHHCCCccEecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhc
Confidence            99 9999999999999999999999999999997 899999999999999998  999999999998764

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=100.00  E-value=3e-49  Score=342.33  Aligned_cols=215  Identities=15%  Similarity=0.250  Sum_probs=185.4

Q ss_pred             ceeeee--CCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCC-------ccccCCChhhHHHc
Q 026137            2 CTSEKH--GDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGK-------FFSNGFDLAWAQAA   72 (243)
Q Consensus         2 i~~~~~--~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~-------~F~~G~D~~~~~~~   72 (243)
                      |+++++  ++|++||||||+  +.|+||.+|+.+|.++++.++.|++++ +|||||.|+       .||+|+|++++...
T Consensus        57 i~~~~~~~~gVa~ItlnrP~--~~NAl~~~~~~eL~~al~~~~~d~~vr-vVVltG~G~~~~~~~~~FcaG~Dl~~~~~~  133 (334)
T 3t8b_A           57 ITYHRHVDDATVRVAFNRPE--VRNAFRPHTVDELYRVLDHARMSPDVG-VVLLTGNGPSPKDGGWAFCSGGDQRIRGRS  133 (334)
T ss_dssp             EEEEEESSSSEEEEEECCGG--GTTCCCHHHHHHHHHHHHHHHHCTTCC-EEEEEECCCCTTTCCCEEECCSCTTTTC--
T ss_pred             EEEEEeccCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEeCCCCCcCCCCCcccCCCCHHHhhcc
Confidence            566765  899999999998  889999999999999999999999999 999999985       89999999876431


Q ss_pred             CC--Ccch----HHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEe-cCccceeccccccCCCC
Q 026137           73 GS--RTGA----RERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMR-RDKGVLYMSEVDIGLTL  145 (243)
Q Consensus        73 ~~--~~~~----~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~-~~~a~f~~p~~~~G~~~  145 (243)
                      ..  ....    ..........+++++..|.++||||||+|||+|+|||++|+++||+|||+ ++ ++|++||+++|+ +
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~-A~f~~pe~~lGl-~  211 (334)
T 3t8b_A          134 GYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREY-ARFKQTDADVGS-F  211 (334)
T ss_dssp             --------------------CCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTT-CEEECCCTTCSS-S
T ss_pred             cccccccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeCCC-cEEECcccccCC-C
Confidence            00  0000    01111122346678889999999999999999999999999999999999 77 999999999999 5


Q ss_pred             Chh-hHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhch
Q 026137          146 PDY-CAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYP  224 (243)
Q Consensus       146 p~~-g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~  224 (243)
                      |++ |+++|++++| ..+|++++++|++|+|+||+++||||+|||+ +++.+++.++|++|++.+  +.+++.+|+.++.
T Consensus       212 p~~gg~~~L~r~vG-~~~A~ellltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~A~~ia~~~--p~a~~~~K~~l~~  287 (334)
T 3t8b_A          212 DGGYGSAYLARQVG-QKFAREIFFLGRTYTAEQMHQMGAVNAVAEH-AELETVGLQWAAEINAKS--PQAQRMLKFAFNL  287 (334)
T ss_dssp             SCCSCHHHHHHHHH-HHHHHHHHHHCCEEEHHHHHHHTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHhh-HHHHHHHHHhCCcCCHHHHHHCCCCcEecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHh
Confidence            665 4789999999 9999999999999999999999999999998 889999999999999998  9999999999976


Q ss_pred             h
Q 026137          225 D  225 (243)
Q Consensus       225 ~  225 (243)
                      .
T Consensus       288 ~  288 (334)
T 3t8b_A          288 L  288 (334)
T ss_dssp             T
T ss_pred             h
Confidence            5

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=100.00  E-value=2e-49  Score=333.77  Aligned_cols=210  Identities=21%  Similarity=0.295  Sum_probs=185.2

Q ss_pred             ceeee---eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcch
Q 026137            2 CTSEK---HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGA   78 (243)
Q Consensus         2 i~~~~---~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~   78 (243)
                      +.++.   .++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|+.||+|.|++++...   .. 
T Consensus         6 ~~~~~~v~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~---~~-   78 (260)
T 1mj3_A            6 IITEKKGKNSSVGLIQLNRPK--ALNALCNGLIEELNQALETFEEDPAVG-AIVLTGGEKAFAAGADIKEMQNR---TF-   78 (260)
T ss_dssp             EEEEEESGGGCEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEECCSSEEECCBCHHHHTTC---CH-
T ss_pred             ceeecccCcCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHHhCCCee-EEEEECCCCCccCCcChHhhhcc---cc-
Confidence            34555   7899999999998  899999999999999999999999999 99999999999999999987532   11 


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHh
Q 026137           79 RERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKV  157 (243)
Q Consensus        79 ~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~  157 (243)
                      ..   .+...+.+.+.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++
T Consensus        79 ~~---~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~v  153 (260)
T 1mj3_A           79 QD---CYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEK-AQFGQPEILLGT-IPGAGGTQRLTRAV  153 (260)
T ss_dssp             HH---HHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECGGGGGTC-CCCSSTTTHHHHHH
T ss_pred             hH---HHHHHHHHHHHHHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCC-CEEeCcccccCC-CCCccHHHHHHHHh
Confidence            11   11222334467888999999999999999999999999999999987 899999999999 67776 57999999


Q ss_pred             CCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      | ..++++++++|++++|+||+++||||+|+|+ +++++++.+++++++..+  +.++..+|+.+++...
T Consensus       154 G-~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  219 (260)
T 1mj3_A          154 G-KSLAMEMVLTGDRISAQDAKQAGLVSKIFPV-ETLVEEAIQCAEKIANNS--KIIVAMAKESVNAAFE  219 (260)
T ss_dssp             C-HHHHHHHHHHCCCEEHHHHHHHTSCSEEECT-TTHHHHHHHHHHHHHHSC--HHHHHHHHHHHHGGGS
T ss_pred             C-HHHHHHHHHcCCcCCHHHHHHcCCccEEeCh-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhc
Confidence            9 9999999999999999999999999999998 889999999999999998  9999999999976543

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=100.00  E-value=1.7e-49  Score=336.28  Aligned_cols=209  Identities=17%  Similarity=0.294  Sum_probs=182.7

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCC-ccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGK-FFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~-~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|+ +||+|+|++++..... .. ..
T Consensus        15 i~~~~~~~va~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~~FcaG~Dl~~~~~~~~-~~-~~   89 (273)
T 2uzf_A           15 IKYEFYEGIAKVTINRPE--VRNAFTPKTVAEMIDAFSRARDDQNVS-VIVLTGEGDLAFCSGGDQKKRGHGGY-VG-ED   89 (273)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCCCHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSEEEECCCCCC---------C-CS
T ss_pred             EEEEEECCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEecCCCCceecCcCcHhhhcccc-ch-hh
Confidence            567889999999999998  899999999999999999999999999 999999998 9999999998753100 00 00


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                      ...  ...+++++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        90 ~~~--~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-  164 (273)
T 2uzf_A           90 QIP--RLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADN-AIFGQTGPKVGS-FDAGYGSGYLARIVG-  164 (273)
T ss_dssp             SSC--CCTHHHHHHHHHHSSSCEEEEECEEEETHHHHHHHHSSEEEEETT-CEEECCGGGTTC-CCCSTTTHHHHHHHC-
T ss_pred             hHH--HhhHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEEcCC-CEEECchhhhCC-CCchhHHHHHHHHhC-
Confidence            000  011456778899999999999999999999999999999999987 899999999999 57665 689999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhc
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLY  223 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~  223 (243)
                      ..++++++++|++++|+||+++||||+|+++ +++.+++.++|+++++.+  +.+++.+|+.++
T Consensus       165 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~  225 (273)
T 2uzf_A          165 HKKAREIWYLCRQYNAQEALDMGLVNTVVPL-EKVEDETVQWCKEIMKHS--PTALRFLKAAMN  225 (273)
T ss_dssp             HHHHHHHHHTCCCEEHHHHHHHTSSSEEECG-GGSHHHHHHHHHHHTTSC--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHcCCCccccCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHH
Confidence            9999999999999999999999999999997 889999999999999998  899999999987

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=100.00  E-value=1.8e-49  Score=333.07  Aligned_cols=209  Identities=20%  Similarity=0.266  Sum_probs=185.6

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|+.||+|.|++++..... .. ...
T Consensus         9 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~-~~~   83 (256)
T 3trr_A            9 VLIEQRDRVLLITINRPD--ARNAVNRAVSQGLAAAADQLDSSADLS-VAIITGAGGNFCAGMDLKAFVSGEA-VL-SER   83 (256)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEEGGGCCCCCBCHHHHHHTCC-CE-ETT
T ss_pred             eEEEEECCEEEEEEcCCC--cCCCCCHHHHHHHHHHHHHHhcCCCeE-EEEEECCCCceecCcCHHHhccccc-hh-hhh
Confidence            678899999999999997  899999999999999999999999999 9999999999999999999876321 11 000


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                            .+ . +..+ ++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus        84 ------~~-~-~~~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG-~  151 (256)
T 3trr_A           84 ------GL-G-FTNV-PPRKPIIAAVEGFALAGGTELVLSCDLVVAGRS-AKFGIPEVKRGL-VAGAGGLLRLPNRIP-Y  151 (256)
T ss_dssp             ------EE-T-TSSS-CCSSCEEEEECSBCCTHHHHHHHTSSEEEEETT-CEECCCGGGGTC-CCCSSHHHHHHHHSC-H
T ss_pred             ------hh-h-HHHh-cCCCCEEEEECCeeeechhHHHHhCCEEEECCC-CEEEehhhccCC-CCCccHHHHHHHHhC-H
Confidence                  01 1 2334 899999999999999999999999999999988 999999999999 57665 679999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHH
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVL  230 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l  230 (243)
                      .++++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..+  +.+++.+|+.+++.....+
T Consensus       152 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l  218 (256)
T 3trr_A          152 QVAMELALTGESFTAEDAAKYGFINRLVDD-GQALDTALELAAKITANG--PLAVAATKRIIIESASWAP  218 (256)
T ss_dssp             HHHHHHHHHCCCEEHHHHGGGTCCSEEECT-TCHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHGGGSCH
T ss_pred             HHHHHHHHhCCCcCHHHHHHCCCeeEecCh-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhhcCCH
Confidence            999999999999999999999999999998 889999999999999998  9999999999987654433

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=100.00  E-value=9.9e-50  Score=335.85  Aligned_cols=210  Identities=17%  Similarity=0.288  Sum_probs=187.1

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec-CC-CccccCCChhhHHHcCCCcchH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS-HG-KFFSNGFDLAWAQAAGSRTGAR   79 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g-~g-~~F~~G~D~~~~~~~~~~~~~~   79 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.++++.++.|+ ++ +||||| .| +.||+|.|++++.....  . .
T Consensus         6 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~-vr-~vVltg~~g~~~F~aG~Dl~~~~~~~~--~-~   78 (261)
T 1ef8_A            6 VNVVTINKVAVIEFNYGR--KLNALSKVFIDDLMQALSDLNRPE-IR-CIILRAPSGSKVFSAGHDIHELPSGGR--D-P   78 (261)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCCCHHHHHHHHHHHHHTCSTT-CC-EEEEECCTTCSEEECCSCSTTC-------C-T
T ss_pred             EEEEEeCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhhCC-ce-EEEEECCCCCCeeecCcChHhhhccCc--h-h
Confidence            678899999999999997  799999999999999999999999 99 999999 88 99999999998754211  0 0


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhC
Q 026137           80 ERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVG  158 (243)
Q Consensus        80 ~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g  158 (243)
                         ..+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus        79 ---~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG  153 (261)
T 1ef8_A           79 ---LSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAAST-STFSMTPVNLGV-PYNLVGIHNLTRDAG  153 (261)
T ss_dssp             ---TCTTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCHHHHTC-CCCHHHHHTTSSSSC
T ss_pred             ---HHHHHHHHHHHHHHHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCC-CEEeCchhccCC-CCCccHHHHHHHHhC
Confidence               011223578888999999999999999999999999999999999987 899999999999 67776 578999999


Q ss_pred             CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                       ..++++++++|++++|+||+++||||+|+|+ +++.+++.++++++++.+  +.++..+|+.+++...
T Consensus       154 -~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  218 (261)
T 1ef8_A          154 -FHIVKELIFTASPITAQRALAVGILNHVVEV-EELEDFTLQMAHHISEKA--PLAIAVIKEELRVLGE  218 (261)
T ss_dssp             -HHHHHHHHHHCCCEEHHHHHHTTSCSEEECH-HHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHcCCccCHHHHHHCCCcccccCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhc
Confidence             9999999999999999999999999999997 899999999999999998  8999999999987544

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=100.00  E-value=7.5e-49  Score=330.11  Aligned_cols=201  Identities=24%  Similarity=0.300  Sum_probs=178.9

Q ss_pred             CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      +|.++++++|++||||||+  +.|++|.+|+.+|.+++++++.| +++ +|||||.|+.||+|.|++....       . 
T Consensus        22 ~i~~~~~~~v~~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d-~vr-~vVltg~G~~FcaG~Dl~~~~~-------~-   89 (264)
T 3he2_A           22 MIGITQAEAVLTIELQRPE--RRNALNSQLVEELTQAIRKAGDG-SAR-AIVLTGQGTAFCAGADLSGDAF-------A-   89 (264)
T ss_dssp             CEEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHCC----CCS-EEEEEESSSCSBCCBCCTTCTT-------G-
T ss_pred             eEEEEEECCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHhhC-Cce-EEEEECCCCCccCCcCCccchh-------h-
Confidence            4788999999999999998  89999999999999999999988 999 9999999999999999983111       1 


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChh-hHHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDY-CAALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~-g~~~l~~~~g~  159 (243)
                        ..+.+.+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++ ++++|++++| 
T Consensus        90 --~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG-  164 (264)
T 3he2_A           90 --ADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPD-AFFQFPTSKYGL-ALDNWSIRRLSSLVG-  164 (264)
T ss_dssp             --GGHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTT-CEEECTHHHHTC-CCCHHHHHHHHHHHC-
T ss_pred             --HHHHHHHHHHHHHHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCC-CEEECcccccCc-CCcchHHHHHHHHhC-
Confidence              123455678899999999999999999999999999999999999987 899999999999 5655 4679999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD  225 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~  225 (243)
                      ..++++++++|++++|+||+++||||+|++     .+++.++|+++++.+  +.+++.+|+.++..
T Consensus       165 ~~~A~~llltG~~i~A~eA~~~GLV~~v~~-----~~~a~~~A~~la~~~--p~a~~~~K~~l~~~  223 (264)
T 3he2_A          165 HGRARAMLLSAEKLTAEIALHTGMANRIGT-----LADAQAWAAEIARLA--PLAIQHAKRVLNDD  223 (264)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSCSEECC-----HHHHHHHHHHHHTSC--HHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHcCCCccHHHHHHCCCeEEEec-----HHHHHHHHHHHHcCC--HHHHHHHHHHHHcc
Confidence            999999999999999999999999999986     256899999999998  99999999999875

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=1.9e-48  Score=340.27  Aligned_cols=191  Identities=18%  Similarity=0.238  Sum_probs=170.3

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.| ++||+|+|++++.....  .+..
T Consensus        11 vl~e~~~~Va~itLnrP~--~~NAl~~~m~~~l~~al~~~~~d~~vr-~vvltg~G~~~FcaG~Dl~~~~~~~~--~~~~   85 (353)
T 4hdt_A           11 VLVNVEGGVGLLTLNRPK--AINSLTHGMVTTMAERLAAWENDDSVR-AVLLTGAGERGLCAGGDVVAIYHSAK--ADGA   85 (353)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHTCTTCC-EEEEEESSSSBSBCCBCHHHHHHHHH--TTSH
T ss_pred             EEEEEECCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEEeCCCCCEecCcCHHHHhhccc--hhhH
Confidence            678999999999999998  899999999999999999999999999 99999998 79999999998865321  1133


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhH-HHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCA-ALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~-~~l~~~~g~  159 (243)
                      ....+....++++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+ ++++|.+| 
T Consensus        86 ~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~iGl-~p~~g~~~~l~rl~g-  162 (353)
T 4hdt_A           86 EARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDT-TKMAMPEVGIGF-IPDVGGTYLLSRAPG-  162 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTT-CEEECCGGGGTC-CCCTTHHHHHHTSST-
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEeECceeecCccccCCcCeeccchh-ccccCccccccc-CCCccceehhhhhhh-
Confidence            44566777889999999999999999999999999999999999999987 999999999999 687775 57776666 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHH
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLG  202 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a  202 (243)
                       .+++++++||++++|+||+++||||+|||+ ++|.+.+.+++
T Consensus       163 -~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~la  203 (353)
T 4hdt_A          163 -KLGLHAALTGAPFSGADAIVMGFADHYVPH-DKIDEFTRAVI  203 (353)
T ss_dssp             -THHHHHHHHCCCBCHHHHHHHTSCSEECCG-GGHHHHHHHHH
T ss_pred             -HHHHHHHhcCCCCCHHHHHHcCCCcEEeCH-HHHHHHHHHHH
Confidence             478999999999999999999999999998 88888887664

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=100.00  E-value=3e-49  Score=333.73  Aligned_cols=210  Identities=20%  Similarity=0.240  Sum_probs=183.4

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.| +.||+|.|++++..... .....
T Consensus        11 v~~~~~~~v~~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~~F~aG~Dl~~~~~~~~-~~~~~   86 (267)
T 3r9t_A           11 ALAERRGNVMVITINRPE--ARNAINAAVSIGVGDALEEAQHDPEVR-AVVLTGAGDKSFCAGADLKAIARREN-LYHPD   86 (267)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSSEEECCBCHHHHHTTCC-CSCTT
T ss_pred             EEEEEECCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCceeCCcChHHHhcccc-hhhHH
Confidence            678899999999999998  899999999999999999999999999 99999999 69999999999875322 11010


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                      . ..+   ....+ ...++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        87 ~-~~~---~~~~~-~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG-  158 (267)
T 3r9t_A           87 H-PEW---GFAGY-VRHFIDKPTIAAVNGTALGGGTELALASDLVVADER-AQFGLPEVKRGL-IAAAGGVFRIAEQLP-  158 (267)
T ss_dssp             C-GGG---CGGGT-TTCCCSSCEEEEECSEECTHHHHHHHHSSEEEEETT-CEECCGGGGTTC-CCTTTHHHHHHHHSC-
T ss_pred             H-HhH---HHHHH-HHHhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCC-CEEECcccccCC-CCCccHHHHHHHHcC-
Confidence            0 000   00111 234899999999999999999999999999999987 999999999999 57766 579999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHh---hchhH
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKS---LYPDL  226 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~---l~~~~  226 (243)
                      ..++++++++|++++|+||+++||||+|+|+ +++.+++.++|+++++.+  +.+++.+|+.   +++..
T Consensus       159 ~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~~~~l~~~~  225 (267)
T 3r9t_A          159 RKVAMRLLLTGEPLSAAAARDWGLINEVVEA-GSVLDAALALASAITVNA--PLSVQASKRIAYGVDDGV  225 (267)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSSSEEECT-TCHHHHHHHHHHHHHTSC--HHHHHHHHHHHTTEETTE
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCccEEcCh-hHHHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999998 889999999999999998  9999999999   87653

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=5.7e-49  Score=331.66  Aligned_cols=208  Identities=21%  Similarity=0.264  Sum_probs=179.1

Q ss_pred             CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      .|.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|+.||+|.|++++..... .. ..
T Consensus        16 ~v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~-~~   90 (265)
T 3qxi_A           16 EVLVEQRDRILIITINRPK--AKNSVNAAVSRALADAMDRLDADAGLS-VGILTGAGGSFCAGMDLKAFARGEN-VV-VE   90 (265)
T ss_dssp             CEEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCCCCSBC-------CC-CE-ET
T ss_pred             eEEEEEECCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEECCCCCeeCCCChhhhhccch-hh-hh
Confidence            3678899999999999997  899999999999999999999999999 9999999999999999999865321 11 00


Q ss_pred             HHHHHHHHHHHH-HHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhC
Q 026137           81 RVHYMFKSFRPL-VAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVG  158 (243)
Q Consensus        81 ~~~~~~~~~~~l-~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g  158 (243)
                       .       +.+ +..+.. ||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus        91 -~-------~~~~~~~~~~-~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG  159 (265)
T 3qxi_A           91 -G-------RGLGFTERPP-AKPLIAAVEGYALAGGTELALATDLIVAARD-SAFGIPEVKRGL-VAGGGGLLRLPERIP  159 (265)
T ss_dssp             -T-------TEETTTTSCC-SSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECGGGGGTC-CCCSSHHHHHHHHSC
T ss_pred             -h-------hhhhHHHhhC-CCCEEEEECCceeHHHHHHHHhCCEEEEcCC-CEEECcccccCc-CCcccHHHHHHHHhC
Confidence             0       111 333444 9999999999999999999999999999988 999999999999 57666 679999999


Q ss_pred             CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137          159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                       ..++++++++|++++|+||+++||||+|||+ +++.+++.++|+++++.+  +.+++.+|+.+++....
T Consensus       160 -~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~~  225 (265)
T 3qxi_A          160 -YAIAMELALTGDNLSAERAHALGMVNVLAEP-GAALDAAIALAEKITANG--PLAVAATKRIITESRGW  225 (265)
T ss_dssp             -HHHHHHHHHHCCCEEHHHHHHTTSCSEEECT-TCHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHTTC
T ss_pred             -HHHHHHHHHcCCCcCHHHHHHCCCccEeeCh-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhhcC
Confidence             9999999999999999999999999999998 889999999999999998  99999999999875543

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=100.00  E-value=3.6e-48  Score=332.67  Aligned_cols=216  Identities=18%  Similarity=0.211  Sum_probs=184.4

Q ss_pred             ceeeeeCCEEEEEEcCCCCCC----CCCCCHHHHHHHHHHHHHHHh-----cCCCCEEEEEecCCCccccCCChhhHHHc
Q 026137            2 CTSEKHGDVFVLTLTGSSNVD----EHRLGPSAIDSILSAIAQAKA-----EATPGSAFITTSHGKFFSNGFDLAWAQAA   72 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~----~N~l~~~~~~~l~~~l~~~~~-----~~~~~~~vvl~g~g~~F~~G~D~~~~~~~   72 (243)
                      |.++++++|++||||+|+  +    .|++|.+|+.+|.+++++++.     |++++ +|||+|.|++||+|+|++++...
T Consensus        34 v~~~~~~~V~~itLnrp~--k~n~~rpal~~~m~~eL~~al~~~~~d~~~~d~~vr-~vVltg~G~~FcaG~Dl~~~~~~  110 (305)
T 3m6n_A           34 IIEEPQRDVYWIHMHADL--AINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAP-HVVLASDSDVFNLGGDLALFCQL  110 (305)
T ss_dssp             EEEETTTTEEEEEECTTC-------CCSBCHHHHHHHHHHHHHHHHHHHHHTCSSC-EEEEEESSSSSBCCBCHHHHHHH
T ss_pred             EEEEEECCEEEEEECCcc--ccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCeE-EEEEECCCCCeecCcCHHHHHhc
Confidence            456778999999999997  7    458999999999999999997     48999 99999999999999999998653


Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHH---hcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh
Q 026137           73 GSRTGARERVHYMFKSFRPLVAAM---MDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC  149 (243)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~~l---~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g  149 (243)
                      .. ..+......+...+.+.+..+   ..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|
T Consensus       111 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl-~p~~g  187 (305)
T 3m6n_A          111 IR-EGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEG-VMMGLPEVLFDL-FPGMG  187 (305)
T ss_dssp             HH-HTCHHHHHHHHHHHHHHHHHHHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETT-CEEECGGGGGTC-CCCSS
T ss_pred             cc-cccHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCEeehHHHHHHHhCCEEEEcCC-CEEECchhccCc-CCCcc
Confidence            11 011222333444445555544   5689999999999999999999999999999988 999999999999 67765


Q ss_pred             -HHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137          150 -AALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       150 -~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                       +++|++++| ..++++++++|++++|+||+++|||++|+|+ +++.+++.++|+++++ +  +.++..+|+.++.....
T Consensus       188 ~~~~L~r~vG-~~~A~~llltG~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~-~--p~a~~~~K~~l~~~~~~  262 (305)
T 3m6n_A          188 AYSFMCQRIS-AHLAQKIMLEGNLYSAEQLLGMGLVDRVVPR-GQGVAAVEQVIRESKR-T--PHAWAAMQQVREMTTAV  262 (305)
T ss_dssp             HHHHHTTTSC-HHHHHHHHHHCCEEEHHHHHHHTSCSEEECT-TCHHHHHHHHHHHHTT-C--HHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHhc-HHHHHHHHHcCCCCCHHHHHHCCCCCEecCh-hHHHHHHHHHHHHHhh-C--hHHHHHHHHHHHhhhcC
Confidence             579999999 9999999999999999999999999999998 8899999999999986 5  78999999999876543

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=100.00  E-value=6.9e-48  Score=326.28  Aligned_cols=207  Identities=19%  Similarity=0.332  Sum_probs=185.4

Q ss_pred             eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHHHHHHH
Q 026137            7 HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARERVHYM   85 (243)
Q Consensus         7 ~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~~~~~~   85 (243)
                      +++|++||||||+  +.|++|.+|+.+|.++++.++.|++++ +|||||.| +.||+|+|++++... .    ......+
T Consensus        19 ~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~~F~aG~Dl~~~~~~-~----~~~~~~~   90 (272)
T 1hzd_A           19 NRGIVVLGINRAY--GKNSLSKNLIKMLSKAVDALKSDKKVR-TIIIRSEVPGIFCAGADLKERAKM-S----SSEVGPF   90 (272)
T ss_dssp             GTTEEEEEECCGG--GTTCBCTTHHHHHHHHHHHHHHCSSCS-EEEEEESBTEEEECCBCHHHHTTS-C----HHHHHHH
T ss_pred             cCCEEEEEEcCCC--cCCCCCHHHHHHHHHHHHHHHhCCCeE-EEEEecCCCCCCcCCCChhhhhcc-C----hHHHHHH
Confidence            6899999999997  899999999999999999999999999 99999988 799999999987642 1    2223344


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCHHHHH
Q 026137           86 FKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSATARR  164 (243)
Q Consensus        86 ~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~~~a~  164 (243)
                      ...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| ..+++
T Consensus        91 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG-~~~A~  167 (272)
T 1hzd_A           91 VSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASS-AKMGLVETKLAI-IPGGGGTQRLPRAIG-MSLAK  167 (272)
T ss_dssp             HHHHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETT-CEEECCGGGGTC-CCCSSHHHHHHHHHC-HHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCC-CEEeCchhccCC-CCCchHHHHHHHHhC-HHHHH
Confidence            566788999999999999999999999999999999999999987 899999999999 67765 579999999 99999


Q ss_pred             HHHhcCcCCCHHHHHHcCchhhhcCChhH----HHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          165 DVLLRAKKIKGEEALRMGLVEAAYDSEER----VAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       165 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~~----l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      +++++|++++|+||+++||||+|+|+ ++    +.+++.+++++++..+  +.+++.+|+.++....
T Consensus       168 ~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~~~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~  231 (272)
T 1hzd_A          168 ELIFSARVLDGKEAKAVGLISHVLEQ-NQEGDAAYRKALDLAREFLPQG--PVAMRVAKLAINQGME  231 (272)
T ss_dssp             HHHHHTCEEEHHHHHHHTSCSEEECC-CTTSCHHHHHHHHHHHTTTTSC--HHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCcCCHHHHHHCCCcceecCh-hhhhHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHhc
Confidence            99999999999999999999999998 54    5568889999999887  8899999999976543

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=100.00  E-value=1.1e-46  Score=330.49  Aligned_cols=214  Identities=21%  Similarity=0.210  Sum_probs=184.1

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.++++.++.|++++ +|||||.| +.||+|+|++++..... .. ..
T Consensus         8 v~~~~~~~v~~itLnrP~--~~Nal~~~m~~~L~~al~~~~~d~~vr-~vVltG~g~~~FcaG~Dl~~~~~~~~-~~-~~   82 (363)
T 3bpt_A            8 VLLGKKGCTGVITLNRPK--FLNALTLNMIRQIYPQLKKWEQDPETF-LIIIKGAGGKAFCAGGDIRVISEAEK-AK-QK   82 (363)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEETTSSEEECCBCHHHHHHHHT-SS-CC
T ss_pred             eEEEEECCEEEEEEcCCC--cCCCCCHHHHHHHHHHHHHHHhCCCeE-EEEEECCCCCcccCCcCHHHHHhhcc-cc-cH
Confidence            568889999999999997  899999999999999999999999999 99999987 99999999998864211 01 11


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                      ....+....++++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        83 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~~g-  159 (363)
T 3bpt_A           83 IAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEK-CLFAMPETAIGL-FPDVGGGYFLPRLQG-  159 (363)
T ss_dssp             CHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTT-CEEECCGGGTTS-CCCTTHHHHHHHSST-
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCC-eEEeCCccccCC-CCCchHHHHHHHhhH-
Confidence            11223444567888999999999999999999999999999999999987 899999999999 67776 568999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHH-----------------------------------------
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEAS-----------------------------------------  198 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a-----------------------------------------  198 (243)
                      . +++++++||++++|+||+++|||++|+|+ +++.+.+                                         
T Consensus       160 ~-~a~~l~ltg~~i~A~eA~~~GLv~~vv~~-~~l~~~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~  237 (363)
T 3bpt_A          160 K-LGYFLALTGFRLKGRDVYRAGIATHFVDS-EKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDK  237 (363)
T ss_dssp             T-HHHHHHHHCCCEETHHHHHTTSCSEECCG-GGHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCCTTTTCCCTTGGGHHH
T ss_pred             H-HHHHHHHcCCCCCHHHHHHCCCcceecCH-HHHHHHHHHHHhcccCCHHHHHHHHHHHHhhhcccCCCchhhHHHHHH
Confidence            6 89999999999999999999999999998 6665421                                         


Q ss_pred             ----------H---------------HHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          199 ----------M---------------RLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       199 ----------~---------------~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                                .               +++++|++.+  |.++..+|+.+++...
T Consensus       238 i~~~f~~~~~~ei~~al~~~~~~~a~~~a~~la~~s--P~al~~~k~~l~~~~~  289 (363)
T 3bpt_A          238 INSCFSANTVEEIIENLQQDGSSFALEQLKVINKMS--PTSLKITLRQLMEGSS  289 (363)
T ss_dssp             HHHHTTSSSHHHHHHHHHHHCCHHHHHHHHHHTTSC--HHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCCCHHHHHHHHhccChHHHHHHHHHHHhCC--chHHHHHHHHHHHHHh
Confidence                      2               5788899888  9999999999977543

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=100.00  E-value=4e-46  Score=331.04  Aligned_cols=211  Identities=21%  Similarity=0.259  Sum_probs=181.3

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecC--------C-CccccCCChhhHHHc
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSH--------G-KFFSNGFDLAWAQAA   72 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~--------g-~~F~~G~D~~~~~~~   72 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.++++.++.|++++ +|||||.        | ++||+|+|++++...
T Consensus       169 v~~e~~~gVa~ItLNRP~--k~NALs~~m~~eL~~al~~~~~D~~VR-vVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~~  245 (440)
T 2np9_A          169 VHLERRDGVARLTMCRDD--RLNAEDGQQVDDMETAVDLALLDPGVR-VGLLRGGVMSHPRYRGKRVFSAGINLKYLSQG  245 (440)
T ss_dssp             EEEEEETTEEEEEECCTT--TTTCBCHHHHHHHHHHHHHHHHCTTCS-EEEEEECBCCSTTTTTCBCCBCCBCHHHHHTT
T ss_pred             EEEEEECCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEEcCCccccccCCCccccCCcchhhhhcc
Confidence            678889999999999998  899999999999999999999999999 9999994        6 899999999998653


Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHH------------hcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccc
Q 026137           73 GSRTGARERVHYMFKSFRPLVAAM------------MDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVD  140 (243)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~~l------------~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~  140 (243)
                      .. +............+++++..+            .++||||||+|||+|+|||++|+++||+||++++ ++|++||++
T Consensus       246 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~-A~Fglpev~  323 (440)
T 2np9_A          246 GI-SLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSD-AYFSLPAAK  323 (440)
T ss_dssp             CC-CTTTTHHHHHHTHHHHHHHCEECCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETT-CEEECCCTT
T ss_pred             Cc-chhhhhhHHHHHHHHHHHHHHHhhcccchhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCC-CEEECchhc
Confidence            11 100100111122345555554            4799999999999999999999999999999987 899999999


Q ss_pred             cCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 026137          141 IGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRK  220 (243)
Q Consensus       141 ~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~  220 (243)
                      +|+ +|++|+++|++++| ..++++++++|++|+|+||+++||||+||++ +++.+++.+++++++     +.++..+|+
T Consensus       324 lGl-~P~~g~~~L~rlvG-~~~A~ellLtG~~i~A~EA~~~GLV~~Vvp~-~eL~~~a~~~A~~la-----~~Av~~~K~  395 (440)
T 2np9_A          324 EGI-IPGAANLRLGRFAG-PRVSRQVILEGRRIWAKEPEARLLVDEVVEP-DELDAAIERSLTRLD-----GDAVLANRR  395 (440)
T ss_dssp             TCC-CCTTHHHHHHHHHH-HHHHHHHHHHCCCEETTSGGGGGTCSEEECH-HHHHHHHHHHHHTTC-----SHHHHHHHH
T ss_pred             cCc-CcchHHHHHHHHhh-HHHHHHHHHcCCCCCHHHHHHCCCCcEecCh-HHHHHHHHHHHHHhC-----HHHHHHHHH
Confidence            999 68888889999999 9999999999999999999999999999997 889999999988874     457899999


Q ss_pred             hhchh
Q 026137          221 SLYPD  225 (243)
Q Consensus       221 ~l~~~  225 (243)
                      .++..
T Consensus       396 ~l~~~  400 (440)
T 2np9_A          396 MLNLA  400 (440)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            88764

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=100.00  E-value=2.8e-46  Score=331.55  Aligned_cols=187  Identities=18%  Similarity=0.167  Sum_probs=164.1

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCc--ch
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRT--GA   78 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~--~~   78 (243)
                      |.++++++|++||||||+  +.|+||.+|+.+|.++++.++.|++++ +|||||.| ++||+|+|++++.......  ..
T Consensus        44 v~~~~~~~V~~ItLnrP~--~~NAl~~~m~~~L~~al~~~~~d~~vr-~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~~~  120 (407)
T 3ju1_A           44 LATASGKLVGVVTLNVEK--ALNALDLDMVRAMTVQLNLWKKDPLIA-CVVLDGSGEKAFCAGGDVRALYHASVAAKGQV  120 (407)
T ss_dssp             EECTTSCEEEEEEECCGG--GTSCBCHHHHHHHHHHHHHHHHCTTEE-EEEEEESSSSEEECCBCCHHHHHHHHHHTSSC
T ss_pred             EEEEEECCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEecCCCCcccCCCChhhhhhccccccccc
Confidence            567788999999999997  899999999999999999999999999 99999999 8999999999986531100  00


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHh
Q 026137           79 RERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKV  157 (243)
Q Consensus        79 ~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~  157 (243)
                      ......+....++++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+ +|++| ++++++++
T Consensus       121 ~~~~~~~~~~~~~l~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~-a~f~~pe~~lGl-~P~~G~t~~L~rl~  198 (407)
T 3ju1_A          121 TEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTET-SRIAMPEVTIGL-YPDVGGSYFLNRMP  198 (407)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTT-CEEECGGGGGTC-CSCTTHHHHTTTSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCC-CEEeChHhhcCC-CCCchHHHHHhhhh
Confidence            1234456667788999999999999999999999999999999999999987 999999999999 67776 56888888


Q ss_pred             CCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHH
Q 026137          158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAE  196 (243)
Q Consensus       158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~  196 (243)
                      |  .+++++++||++++|+||+++|||++|||+ +++.+
T Consensus       199 g--~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~-~~l~~  234 (407)
T 3ju1_A          199 G--KMGLFLGLTAYHMNAADACYVGLADHYLNR-DDKEL  234 (407)
T ss_dssp             T--THHHHHHHHCCCBCHHHHHHHTSCSEECCG-GGHHH
T ss_pred             H--HHHHHHHHcCCcCcHHHHHHCCCccEEcCH-HHHHH
Confidence            7  678999999999999999999999999998 66655

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=100.00  E-value=1.3e-44  Score=324.50  Aligned_cols=215  Identities=18%  Similarity=0.170  Sum_probs=187.0

Q ss_pred             ceeeeeCCEEEEEEcCCCCC--------CCCCCCHHHHHHHHHHHHHHHhc-CCCCEEEEEec-CCCccccCCChhhHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNV--------DEHRLGPSAIDSILSAIAQAKAE-ATPGSAFITTS-HGKFFSNGFDLAWAQA   71 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~--------~~N~l~~~~~~~l~~~l~~~~~~-~~~~~~vvl~g-~g~~F~~G~D~~~~~~   71 (243)
                      |.++++++|++|+||+|++.        +.|++|.+|+.+|.+++++++.| ++++ +||||| .|+.||+|+|++++..
T Consensus        23 v~ve~~ggVA~ITLNRPed~~l~~g~~~k~NALs~~ml~eL~~AL~~~~~D~~~VR-aVVLTGa~G~~FcAGaDL~el~~  101 (556)
T 2w3p_A           23 WKLSFNGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVR-TVVLTSLKDRVFCSGANIFMLGL  101 (556)
T ss_dssp             EEEEEETTEEEEEECCCTTCCSSSSCCCCTTEECHHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSSEEECEECHHHHHH
T ss_pred             EEEEeeCCEEEEEEecccccccccccCCCCCCCCHHHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCcccCCcCHHHHhh
Confidence            56788999999999999411        57999999999999999999999 9999 999999 8999999999999875


Q ss_pred             cCCCcchHHHHHHHHHHHHHHHHHH----hcCCCcEEEEECCccchhHHHHHHhcCEEEEecC-ccceeccccc-cCCCC
Q 026137           72 AGSRTGARERVHYMFKSFRPLVAAM----MDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRD-KGVLYMSEVD-IGLTL  145 (243)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~-~a~f~~p~~~-~G~~~  145 (243)
                      ..     ......+.+.+++++.++    .++||||||+|||+|+|||++|+++||+||++++ +++|++||++ +|+ +
T Consensus       102 ~~-----~~~~~~~~~~~~~l~~~L~~a~~~~pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~~LGL-~  175 (556)
T 2w3p_A          102 ST-----HAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGV-L  175 (556)
T ss_dssp             SC-----HHHHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHHHHSS-C
T ss_pred             cc-----cHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEecccccccCC-C
Confidence            31     122233455677888888    9999999999999999999999999999999986 3899999999 999 6


Q ss_pred             Chhh-HHHHH--HHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhh
Q 026137          146 PDYC-AALFR--EKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSL  222 (243)
Q Consensus       146 p~~g-~~~l~--~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l  222 (243)
                      |++| +++++  +++| ..++++++++|++++|+||+++||||+|+|+ +++.+++.++|+++++.+  +.++.. |+.+
T Consensus       176 Pg~Ggt~rLp~~RlVG-~~rA~eLlLTGr~isA~EAl~lGLVdeVVp~-~eL~~~A~~lA~~LA~~~--p~Av~~-K~l~  250 (556)
T 2w3p_A          176 PGTGGLTRVTDKRKVR-HDRADIFCTVVEGVRGERAKAWRLVDEVVKP-NQFDQAIQARALELAAQS--DRPAHA-QGVP  250 (556)
T ss_dssp             CTTTHHHHHHHTSCCC-HHHHHHHTTCSSCEEHHHHHHTTSCSEEECH-HHHHHHHHHHHHHHHTTC--CCCTTC-CCCC
T ss_pred             CCccHHHHHHhhccCC-HHHHHHHHHcCCCCCHHHHHHCCCceEEeCh-hHHHHHHHHHHHHHHcCC--hHHHhh-hhhh
Confidence            7776 57899  9999 9999999999999999999999999999997 899999999999999998  666664 6665


Q ss_pred             chhHHH
Q 026137          223 YPDLCG  228 (243)
Q Consensus       223 ~~~~~~  228 (243)
                      ++.+.+
T Consensus       251 ~~~l~r  256 (556)
T 2w3p_A          251 LTRIER  256 (556)
T ss_dssp             CCCCCC
T ss_pred             cchhhh
Confidence            554433

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=8.9e-44  Score=335.28  Aligned_cols=186  Identities=22%  Similarity=0.366  Sum_probs=169.4

Q ss_pred             eeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHH
Q 026137            4 SEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVH   83 (243)
Q Consensus         4 ~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~   83 (243)
                      ++.+|+|++||||||   +.|+||.+|+.+|.+++++++.|++++ +|||||.|+.||+|+|++++.....    .    
T Consensus        25 ~~~~~~Va~itlnrP---~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aGaDl~~~~~~~~----~----   92 (742)
T 3zwc_A           25 LRLPHSLAMIRLCNP---PVNAVSPTVIREVRNGLQKAGSDHTVK-AIVICGANGNFCAGADIHGFSAFTP----G----   92 (742)
T ss_dssp             EECSTTEEEEEECCT---TTTCBCHHHHHHHHHHHHHHHTCTTCC-EEEEEESTTCSBCCBCSSSCCSSCS----C----
T ss_pred             EEeeCCEEEEEeCCC---cccCCCHHHHHHHHHHHHHHhhCCCCe-EEEEECCCCccccCcChHhhhccCh----h----
Confidence            345899999999999   789999999999999999999999999 9999999999999999998865322    1    


Q ss_pred             HHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCHHH
Q 026137           84 YMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSATA  162 (243)
Q Consensus        84 ~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~~~  162 (243)
                         ..+++++.+|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+ +|++| +++|+|++| ..+
T Consensus        93 ---~~~~~~~~~i~~~~kPvIAai~G~a~GGG~elalacD~ria~~~-a~fg~pev~lGl-~Pg~ggt~rL~rlvG-~~~  166 (742)
T 3zwc_A           93 ---LALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAK-ARVGLPEVTLGI-LPGARGTQLLPRVVG-VPV  166 (742)
T ss_dssp             ---SHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHTSSEEEEETT-CEEECGGGGGTC-CCTTTHHHHHHHHHC-HHH
T ss_pred             ---HHHHHHHHHHHhCCCCEEEEECccchHHHHHHHHhcCEEEEcCC-CEEECcccCccc-CCCccHHHHHHHhhh-HHH
Confidence               12466788999999999999999999999999999999999987 999999999999 67776 579999999 999


Q ss_pred             HHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCC
Q 026137          163 RRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRK  209 (243)
Q Consensus       163 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~  209 (243)
                      |++++++|++++|+||+++||||+|+++ +. .++|.++|++++.++
T Consensus       167 A~~l~ltG~~i~a~eA~~~GLv~~vv~~-d~-~~~A~~~A~~ia~~~  211 (742)
T 3zwc_A          167 ALDLITSGKYLSADEALRLGILDAVVKS-DP-VEEAIKFAQKIIDKP  211 (742)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEEESS-CH-HHHHHHHHHHHTTSC
T ss_pred             HHHHHHcCCchhHHHHHHcCCccEecCc-hh-hHHHHHHHHHHhcCC
Confidence            9999999999999999999999999987 54 578999999999886

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=1.9e-41  Score=320.23  Aligned_cols=198  Identities=21%  Similarity=0.309  Sum_probs=175.8

Q ss_pred             ceee-eeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCC-ccccCCChhhHHHcCCCcchH
Q 026137            2 CTSE-KHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGK-FFSNGFDLAWAQAAGSRTGAR   79 (243)
Q Consensus         2 i~~~-~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~-~F~~G~D~~~~~~~~~~~~~~   79 (243)
                      ++++ .+++|++||||||+ ++.|++|.+|+.+|.+++++++.|++++ +||||| |+ .||+|+|++++..... .. .
T Consensus         8 i~~~~~~~~va~itlnrp~-~~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg-g~~~F~aG~Dl~~~~~~~~-~~-~   82 (715)
T 1wdk_A            8 ITVTALESGIVELKFDLKG-ESVNKFNRLTLNELRQAVDAIKADASVK-GVIVSS-GKDVFIVGADITEFVENFK-LP-D   82 (715)
T ss_dssp             EEEEECGGGEEEEEECCTT-SSSCBCCHHHHHHHHHHHHHHHHCTTCC-EEEEEE-SSSSSBBCCCHHHHHHHTT-SC-H
T ss_pred             EEEEEeeCCEEEEEEcCCC-CCCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEEC-CCCeEeCCcCHHHHhhccc-CC-H
Confidence            4667 67899999999992 1489999999999999999999999999 999999 76 9999999999865311 11 2


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhC
Q 026137           80 ERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVG  158 (243)
Q Consensus        80 ~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g  158 (243)
                      .....+...+++++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+ +|++| +++|++++|
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~-a~fglpev~lGl-~P~~ggt~~L~r~vG  160 (715)
T 1wdk_A           83 AELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADS-AKIGLPEVKLGI-YPGFGGTVRLPRLIG  160 (715)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETT-CEEECGGGGGTC-CCCSSHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCC-CEEeChhhccCC-CCCccHHHHHHHHhC
Confidence            223344566889999999999999999999999999999999999999987 899999999999 67776 579999999


Q ss_pred             CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcC
Q 026137          159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR  208 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~  208 (243)
                       ..+|++++++|++++|+||+++||||+|+++ +++.+++.+++++++..
T Consensus       161 -~~~A~~l~ltG~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~  208 (715)
T 1wdk_A          161 -VDNAVEWIASGKENRAEDALKVSAVDAVVTA-DKLGAAALDLIKRAISG  208 (715)
T ss_dssp             -HHHHHHHHHHCCCEEHHHHHHTTSSSEEECG-GGHHHHHHHHHHHHHTT
T ss_pred             -HHHHHHHHHcCCCCCHHHHHHCCCceEEeCh-HHHHHHHHHHHHHHhhc
Confidence             9999999999999999999999999999987 88999999999999876

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=2.7e-42  Score=326.20  Aligned_cols=196  Identities=22%  Similarity=0.322  Sum_probs=167.7

Q ss_pred             ceee-eeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCC-ccccCCChhhHHHcCCCcchH
Q 026137            2 CTSE-KHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGK-FFSNGFDLAWAQAAGSRTGAR   79 (243)
Q Consensus         2 i~~~-~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~-~F~~G~D~~~~~~~~~~~~~~   79 (243)
                      ++++ .+++|++||||||   +.|++|.+|+.+|.+++++++.|++++ +||||| |+ .||+|+|++++..... .. .
T Consensus         9 i~~~~~~~~va~itlnrp---~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg-g~~~F~aG~Dl~~~~~~~~-~~-~   81 (725)
T 2wtb_A            9 TVMEVGGDGVAVITLINP---PVNSLSFDVLYNLKSNYEEALSRNDVK-AIVITG-AKGRFSGGFDISGFGEMQK-GN-V   81 (725)
T ss_dssp             EEEEECTTSEEEEEEECT---TTTCCCHHHHHHHHHHHHHHTTCTTCC-EEEEEE-SSSCCBCSSCC-------------
T ss_pred             EEEEEeeCCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEEC-CCCcccCCcCHHHHhcccc-hh-h
Confidence            5667 6789999999999   899999999999999999999999999 999999 75 9999999998754210 00 0


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhC
Q 026137           80 ERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVG  158 (243)
Q Consensus        80 ~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g  158 (243)
                      .....+...+++++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+ +|++| +++|++++|
T Consensus        82 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~-a~fglpev~lGl-~P~~Ggt~~L~rlvG  159 (725)
T 2wtb_A           82 KEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPA-AQLGLPELQLGV-IPGFGGTQRLPRLVG  159 (725)
T ss_dssp             -CCSSSHHHHHCCCCCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTT-CEEECCGGGGTC-CCCSSHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHHHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCC-CEEeCchhccCC-CCCccHHHHHHHhcC
Confidence            000112345667778899999999999999999999999999999999987 899999999999 67776 579999999


Q ss_pred             CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcC
Q 026137          159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR  208 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~  208 (243)
                       ..+|++++++|++++|+||+++||||+|+++ +++.+++.+++++++..
T Consensus       160 -~~~A~~l~ltG~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~  207 (725)
T 2wtb_A          160 -LTKALEMILTSKPVKAEEGHSLGLIDAVVPP-AELVTTARRWALDIVGR  207 (725)
T ss_dssp             -HHHHHHHHHHCCCEEHHHHHHHTSCSEECCT-TTHHHHHHHHHHHHHTT
T ss_pred             -HHHHHHHHHcCCCCCHHHHHHCCccceEcCh-hHHHHHHHHHHHHHHhc
Confidence             9999999999999999999999999999997 88999999999999876

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.88  E-value=6.9e-24  Score=196.53  Aligned_cols=170  Identities=19%  Similarity=0.254  Sum_probs=139.8

Q ss_pred             eeCCEEEEEEcCCCCCCCCC--CCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHH
Q 026137            6 KHGDVFVLTLTGSSNVDEHR--LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVH   83 (243)
Q Consensus         6 ~~~~v~~i~ln~p~~~~~N~--l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~   83 (243)
                      .+++|++|++|+|.  ..|.  ++..+.++|.++|++++.|++++ +|||++.+    .|+|+...              
T Consensus       299 ~~~~VavI~l~g~i--~~n~~~~~~~~~~~l~~~L~~a~~d~~vk-aVVL~i~s----pGG~~~~~--------------  357 (593)
T 3bf0_A          299 TGDSIGVVFANGAI--MDGEETQGNVGGDTTAAQIRDARLDPKVK-AIVLRVNS----PGGSVTAS--------------  357 (593)
T ss_dssp             CSCEEEEEEEEEEE--ESSSSCTTSEEHHHHHHHHHHHHHCTTEE-EEEEEEEE----EEECHHHH--------------
T ss_pred             CCCCEEEEEEeeee--cCCccccchhHHHHHHHHHHHHHhCCCCC-EEEEEecC----CCCCHHHH--------------
Confidence            35789999999996  6787  68889999999999999999999 89999863    57776532              


Q ss_pred             HHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceecccc------------ccCCCCChh---
Q 026137           84 YMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEV------------DIGLTLPDY---  148 (243)
Q Consensus        84 ~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~------------~~G~~~p~~---  148 (243)
                         ..+++.+.++..++||||++|+|.|.|||+.++++||+++|+++ +.|+.+++            ++|+. |..   
T Consensus       358 ---~~i~~~i~~l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~-a~~Gsigv~~~~~~~~~~~~klGi~-~~~~~~  432 (593)
T 3bf0_A          358 ---EVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPS-TLTGSIGIFGVITTVENSLDSIGVH-TDGVST  432 (593)
T ss_dssp             ---HHHHHHHHHHHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTT-CEEECCCEEEEEEECHHHHHHTTCE-EECCBS
T ss_pred             ---HHHHHHHHHHHhCCCCEEEEECCChHHHHHHHHHhCCEEEECCC-CEeecceeEEecCchHHHHHhcCce-eeeeec
Confidence               12345667788899999999999999999999999999999987 89998875            57873 321   


Q ss_pred             ----------h-H---------------HHHHHHhCCHHH-----HHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHH
Q 026137          149 ----------C-A---------------ALFREKVGSATA-----RRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEA  197 (243)
Q Consensus       149 ----------g-~---------------~~l~~~~g~~~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~  197 (243)
                                + +               ..+.+.++ ..+     +.+++++|+.|+|+||+++||||++++. +++.++
T Consensus       433 g~~k~~~~~~~~t~~~~~~l~~~l~~~~~~f~~~V~-~~Rg~~~~a~~~l~~G~~~ta~eA~~~GLVD~v~~~-~~~~~~  510 (593)
T 3bf0_A          433 SPLADVSITRALPPEAQLMMQLSIENGYKRFITLVA-DARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDF-DDAVAK  510 (593)
T ss_dssp             CGGGCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCHHHHHTTCTTCEEEHHHHHHHTSCSEECCH-HHHHHH
T ss_pred             ccccccCcCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHhcCCCcCHHHHHHCCCCcCccCH-HHHHHH
Confidence                      1 1               45677777 666     8899999999999999999999999976 777777


Q ss_pred             HHHHHH
Q 026137          198 SMRLGK  203 (243)
Q Consensus       198 a~~~a~  203 (243)
                      +.+++.
T Consensus       511 a~~~a~  516 (593)
T 3bf0_A          511 AAELAK  516 (593)
T ss_dssp             HHHHSC
T ss_pred             HHHHcC
Confidence            776543

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.86  E-value=3.1e-21  Score=158.13  Aligned_cols=156  Identities=19%  Similarity=0.257  Sum_probs=126.5

Q ss_pred             eeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHH
Q 026137            6 KHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYM   85 (243)
Q Consensus         6 ~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~   85 (243)
                      ..+.|++|+++++       ++..+.+.|.++|+.++++ +++ +|+++..    |.|+++..                 
T Consensus         6 ~~~~V~vI~i~g~-------I~~~~~~~l~~~l~~a~~~-~~~-~Ivl~in----spGG~v~~-----------------   55 (230)
T 3viv_A            6 AKNIVYVAQIKGQ-------ITSYTYDQFDRYITIAEQD-NAE-AIIIELD----TPGGRADA-----------------   55 (230)
T ss_dssp             CCCEEEEEEEESC-------BCHHHHHHHHHHHHHHHHT-TCS-EEEEEEE----BSCEEHHH-----------------
T ss_pred             CCCeEEEEEEeCE-------ECHHHHHHHHHHHHHHhcC-CCC-EEEEEEe----CCCcCHHH-----------------
Confidence            3568999999976       9999999999999999864 689 8898763    77776543                 


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEE---CCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhH------------
Q 026137           86 FKSFRPLVAAMMDLPMPTVAAV---NGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCA------------  150 (243)
Q Consensus        86 ~~~~~~l~~~l~~~~kp~Ia~v---~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~------------  150 (243)
                         ...++..|..+|+|||+.|   +|.|.|+|+.|+++||+++++++ ++|+.++...+.  |+.|.            
T Consensus        56 ---~~~i~~~i~~~~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~-a~ig~~~p~~~~--~~~G~~~~~~~k~~~~~  129 (230)
T 3viv_A           56 ---MMNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPG-TSIGACRPILGY--SQNGSIIEAPPAITNYF  129 (230)
T ss_dssp             ---HHHHHHHHHTCSSCEEEEECSTTCEEETHHHHHHHTSSEEEECTT-CEEECCCEEEEE--CTTSCEEECCHHHHHHH
T ss_pred             ---HHHHHHHHHhCCCCEEEEEecCCCEEhHHHHHHHHhcCceeECCC-CEEEeccceecC--CCCCCchHHHHHHHHHH
Confidence               2456677888999999999   99999999999999999999988 899988887432  22221            


Q ss_pred             ----HHHHHHhCC-HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHH
Q 026137          151 ----ALFREKVGS-ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEA  197 (243)
Q Consensus       151 ----~~l~~~~g~-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~  197 (243)
                          ..+.++.|. ...+.+++..+..++|+||+++||||+|+++.++++++
T Consensus       130 ~~~~~~la~~~Gr~~~~a~~~~~~~~~ltA~EAle~GliD~V~~~~~~ll~~  181 (230)
T 3viv_A          130 IAYIKSLAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELLKK  181 (230)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHTCCEECHHHHHHTTSCSEECSSHHHHHHH
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHhcCCeecHHHHHHcCCceEecCCHHHHHHH
Confidence                246777882 37889999999999999999999999999875555443

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.86  E-value=2.1e-21  Score=160.93  Aligned_cols=168  Identities=13%  Similarity=0.164  Sum_probs=125.7

Q ss_pred             eCCEEEEEEcCCCCCCCCCCCH-------HHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchH
Q 026137            7 HGDVFVLTLTGSSNVDEHRLGP-------SAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGAR   79 (243)
Q Consensus         7 ~~~v~~i~ln~p~~~~~N~l~~-------~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~   79 (243)
                      +++|++|+++.+-  ..+.-..       -.+.+|.++|++++.|++++ +|||++.    |.|+|+....         
T Consensus         2 ~~~iavi~i~G~I--~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~-~ivL~~~----s~Gg~~~~~~---------   65 (240)
T 3rst_A            2 SSKIAVLEVSGTI--QDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVK-GIVLKVN----SPGGGVYESA---------   65 (240)
T ss_dssp             CCEEEEEEEESCB--CCC---------CCCCHHHHHHHHHHHHHCTTEE-EEEEEEE----ECCBCHHHHH---------
T ss_pred             CCeEEEEEEEEEE--cCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcE-EEEEEec----CCCCCHHHHH---------
Confidence            4689999999874  2221001       13689999999999999999 8999885    6788876432         


Q ss_pred             HHHHHHHHHHHHHHHHHhc-CCCcEEEEECCccchhHHHHHHhcCEEEEecCccceecc---------------------
Q 026137           80 ERVHYMFKSFRPLVAAMMD-LPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMS---------------------  137 (243)
Q Consensus        80 ~~~~~~~~~~~~l~~~l~~-~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p---------------------  137 (243)
                              .+.+.+.++.. ++|||||+++|.|.|+|+.|+++||+++++++ +.|+.+                     
T Consensus        66 --------~i~~~l~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~-a~~g~~Gv~~~~~~~~~~l~k~Gi~~~  136 (240)
T 3rst_A           66 --------EIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPE-TLTGSLGVIMESVNYSKLADKLGISFE  136 (240)
T ss_dssp             --------HHHHHHHHHHHHHCCCEEEEEEEEEETHHHHHHTTSSEEEECTT-CEEECCCCEEEEEECHHHHHHHTCEEE
T ss_pred             --------HHHHHHHHHHHhCCCeEEEEECCeehHhHHHHHHhCCeeEECCC-CeEeccceeeEecCHHHHHHHcCCeEE
Confidence                    23455666776 89999999999999999999999999999987 899999                     


Q ss_pred             ccccCCCCChhhH---------------------------HHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCC
Q 026137          138 EVDIGLTLPDYCA---------------------------ALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDS  190 (243)
Q Consensus       138 ~~~~G~~~p~~g~---------------------------~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  190 (243)
                      ..+.|. +++.+.                           ..-.|.+. .....+ +++|+.+++++|+++||||++.+.
T Consensus       137 ~~~~G~-~k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~~Va~~R~l~-~~~~~~-~~~g~~~~a~~A~~~GLVD~i~~~  213 (240)
T 3rst_A          137 TIKSGA-HADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMP-KAEVKK-IADGRVYDGRQAKKLNLVDELGFY  213 (240)
T ss_dssp             EEESST-TTTTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-HHHHHH-HCSSCEEEHHHHHHTTSSSEECCH
T ss_pred             EEeccc-cccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-HHHHHH-HhcCCcccHHHHHHcCCCcccCCH
Confidence            455565 454431                           11224455 555444 789999999999999999999986


Q ss_pred             hhHHHHHHHHHHH
Q 026137          191 EERVAEASMRLGK  203 (243)
Q Consensus       191 ~~~l~~~a~~~a~  203 (243)
                       +++.+.+.+++.
T Consensus       214 -~~~~~~~~~~~~  225 (240)
T 3rst_A          214 -DDTITAMKKDHK  225 (240)
T ss_dssp             -HHHHHHHHHHCG
T ss_pred             -HHHHHHHHHHhC
Confidence             666666665543

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.69  E-value=1.1e-16  Score=136.22  Aligned_cols=148  Identities=11%  Similarity=0.108  Sum_probs=121.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhc---
Q 026137           22 DEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMD---   98 (243)
Q Consensus        22 ~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---   98 (243)
                      ..|+++..+...+.++++.+.++ .+. +|++++.|     |+|+.+...         .    ...+.+++.++..   
T Consensus       130 ~ggslg~~~~~Ki~r~~e~A~~~-~~P-vI~l~~sG-----Garlqeg~~---------~----l~~~~~i~~al~~~~~  189 (304)
T 2f9y_B          130 MGGSMGSVVGARFVRAVEQALED-NCP-LICFSASG-----GARMQEALM---------S----LMQMAKTSAALAKMQE  189 (304)
T ss_dssp             TTTCBCTHHHHHHHHHHHHHHHH-TCC-EEEEEEES-----SBCGGGTHH---------H----HHHHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHHHHhC-CCC-EEEEECCC-----CcCHHHHHH---------H----HHHHHHHHHHHHHHhc
Confidence            57999999999999999999998 888 89999866     788854321         1    1345566666654   


Q ss_pred             CCCcEEEEECCccchhH-HHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHH
Q 026137           99 LPMPTVAAVNGHAAAAG-FILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEE  177 (243)
Q Consensus        99 ~~kp~Ia~v~G~~~G~G-~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~e  177 (243)
                      .++|+|++|+|+|.||| +.++++||++|+.++ ++|++.           |...+.+.+| ..      ++++..+|++
T Consensus       190 ~~vP~IavV~G~~~GGg~a~~a~~~D~via~~~-A~i~v~-----------Gp~~i~~~ig-~~------l~~~~~~Ae~  250 (304)
T 2f9y_B          190 RGLPYISVLTDPTMGGVSASFAMLGDLNIAEPK-ALIGFA-----------GPRVIEQTVR-EK------LPPGFQRSEF  250 (304)
T ss_dssp             TTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTT-CBEESS-----------CHHHHHHHHT-SC------CCTTTTBHHH
T ss_pred             CCCCEEEEEECCCccHHHHHHHhcCCEEEEeCC-cEEEee-----------cHHHHHHHhC-cc------CCcccCCHHH
Confidence            59999999999999999 778999999999987 877654           4566788888 32      4688999999


Q ss_pred             HHHcCchhhhcCChhHHHHHHHHHHHHHhcCC
Q 026137          178 ALRMGLVEAAYDSEERVAEASMRLGKQLAGRK  209 (243)
Q Consensus       178 A~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~  209 (243)
                      +.++|+||.|+++ +++.+.+.+++..+...+
T Consensus       251 ~~~~Glvd~Vv~~-~el~~~l~~ll~~l~~~~  281 (304)
T 2f9y_B          251 LIEKGAIDMIVRR-PEMRLKLASILAKLMNLP  281 (304)
T ss_dssp             HGGGTCCSEECCH-HHHHHHHHHHHHHHTTCC
T ss_pred             HHhcCCccEEeCc-HHHHHHHHHHHHHhhcCC
Confidence            9999999999998 789999999999998754

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=99.69  E-value=1.8e-16  Score=129.19  Aligned_cols=137  Identities=15%  Similarity=0.131  Sum_probs=107.9

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026137           26 LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVA  105 (243)
Q Consensus        26 l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia  105 (243)
                      ++..+.+++.+.|..++.++.++ .|++.    ..|.|+++..                    ...++..+..+++||++
T Consensus        54 I~~~~a~~i~~~L~~l~~~~~~k-~I~l~----InSPGG~v~a--------------------g~~I~~~i~~~~~pV~t  108 (218)
T 1y7o_A           54 VEDNMANSVIAQLLFLDAQDSTK-DIYLY----VNTPGGSVSA--------------------GLAIVDTMNFIKADVQT  108 (218)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCTTS-CEEEE----EEECCBCHHH--------------------HHHHHHHHHHSSSCEEE
T ss_pred             ECHHHHHHHHHHHHHHHhcCCCC-CEEEE----EECcCCCHHH--------------------HHHHHHHHHhcCCCEEE
Confidence            88999999999999999887777 56664    4666665442                    23355667778999999


Q ss_pred             EECCccchhHHHHHHhcCE--EEEecCccceeccccccCCCCChhh-------------------HHHHHHHhCC-HHHH
Q 026137          106 AVNGHAAAAGFILALSHDY--VVMRRDKGVLYMSEVDIGLTLPDYC-------------------AALFREKVGS-ATAR  163 (243)
Q Consensus       106 ~v~G~~~G~G~~lal~~D~--~ia~~~~a~f~~p~~~~G~~~p~~g-------------------~~~l~~~~g~-~~~a  163 (243)
                      .++|.|.++|+.++++||.  |++.++ ++|++++..-|.  |..|                   ...+.+..|. ...+
T Consensus       109 ~v~G~AaS~G~~Ia~a~d~g~r~a~p~-a~igih~p~~g~--~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i  185 (218)
T 1y7o_A          109 IVMGMAASMGTVIASSGAKGKRFMLPN-AEYMIHQPMGGT--GGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKV  185 (218)
T ss_dssp             EEEEEEETHHHHHHTTSCTTCEEECTT-CEEECCCCC----------------CHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred             EEccEeHHHHHHHHHcCCcCcEEEcCC-cEEEEecccccc--cCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence            9999999999999999999  999988 889988886333  3222                   1456777772 2577


Q ss_pred             HHHHhcCcCCCHHHHHHcCchhhhcCC
Q 026137          164 RDVLLRAKKIKGEEALRMGLVEAAYDS  190 (243)
Q Consensus       164 ~~l~l~g~~~~a~eA~~~Glv~~vv~~  190 (243)
                      .+++..++.++|+||+++||||+|+++
T Consensus       186 ~~~~~~~~~~ta~EA~e~GLVD~v~~~  212 (218)
T 1y7o_A          186 HADAERDNWMSAQETLEYGFIDEIMAN  212 (218)
T ss_dssp             HHHHHSCCCBCHHHHHHHTSCSEECCC
T ss_pred             HHHHhCCCEEcHHHHHHCCCCcEEcCc
Confidence            888899999999999999999999987

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=99.61  E-value=5.8e-15  Score=126.84  Aligned_cols=138  Identities=18%  Similarity=0.218  Sum_probs=102.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026137           24 HRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPT  103 (243)
Q Consensus        24 N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~  103 (243)
                      ++++++......+.++.+++..-+- +.++-+.|-..  |...+.              .-......+++..+..+++|+
T Consensus       139 G~~~~~~~~Ka~r~~~~A~~~~~Pl-I~lvdt~Ga~~--g~~ae~--------------~g~~~~~a~~l~al~~~~vPv  201 (327)
T 2f9i_A          139 GMAHPEGYRKALRLMKQAEKFNRPI-FTFIDTKGAYP--GKAAEE--------------RGQSESIATNLIEMASLKVPV  201 (327)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHTTCCE-EEEEEESCSCC--CHHHHH--------------TTHHHHHHHHHHHHHTCSSCE
T ss_pred             CCCCHHHHHHHHHHHHHHhhcCCCE-EEEEeCCCCCc--chhhhh--------------hhhHHHHHHHHHHHHhCCCCE
Confidence            5799999999999999998876553 34443333222  221111              012345567778899999999


Q ss_pred             EEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCc
Q 026137          104 VAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGL  183 (243)
Q Consensus       104 Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Gl  183 (243)
                      |++|+|.|.|||+.++++||++||+++ +.|++      + .|.+++..+.+..+....+.++    +.++|++|+++|+
T Consensus       202 IavV~G~a~GGGa~~~~~~D~via~~~-A~~~v------~-~peg~a~il~~~~~~a~~A~e~----~~itA~~a~~~Gl  269 (327)
T 2f9i_A          202 IAIVIGEGGSGGALGIGIANKVLMLEN-STYSV------I-SPEGAAALLWKDSNLAKIAAET----MKITAHDIKQLGI  269 (327)
T ss_dssp             EEEEEEEEBHHHHHTTCCCSEEEEETT-CBCBS------S-CHHHHHHHHSSCGGGHHHHHHH----HTCBHHHHHHTTS
T ss_pred             EEEEECCcChHHHHHHHCCCEEEEcCC-ceEee------c-CchHHHHHHHHHhcchHHHHHH----cCCCHHHHHHcCC
Confidence            999999999999999999999999988 77764      2 5666666666665524666665    7899999999999


Q ss_pred             hhhhcCC
Q 026137          184 VEAAYDS  190 (243)
Q Consensus       184 v~~vv~~  190 (243)
                      ||+|++.
T Consensus       270 Vd~VV~e  276 (327)
T 2f9i_A          270 IDDVISE  276 (327)
T ss_dssp             SSEEECC
T ss_pred             ceEEecC
Confidence            9999984

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.57  E-value=4.3e-14  Score=121.81  Aligned_cols=138  Identities=15%  Similarity=0.172  Sum_probs=102.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026137           24 HRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPT  103 (243)
Q Consensus        24 N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~  103 (243)
                      +++++.......+.++.+++..-+  +|.+.-+++++. |...+.              .-......+++..+..+++|+
T Consensus       153 G~~~~~~~~Ka~r~~~~A~~~~lP--lI~lvDt~Ga~~-g~~aE~--------------~g~~~~~a~~l~al~~~~vPv  215 (339)
T 2f9y_A          153 GMPAPEGYRKALRLMQMAERFKMP--IITFIDTPGAYP-GVGAEE--------------RGQSEAIARNLREMSRLGVPV  215 (339)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHTTCC--EEEEEEESCSCC-SHHHHH--------------TTHHHHHHHHHHHHHTCSSCE
T ss_pred             CCCCHHHHHHHHHHHHHHhhcCCC--EEEEEeCCCCcc-chHHHH--------------HHHHHHHHHHHHHHHhCCCCE
Confidence            579999999999999998877654  344433222222 221111              112345567788899999999


Q ss_pred             EEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCc
Q 026137          104 VAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGL  183 (243)
Q Consensus       104 Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Gl  183 (243)
                      |++|+|.|.|||+.++++||++||.++ ++|++      + .|.+++..+.+.......+.++    ..++|++|+++|+
T Consensus       216 IavV~G~a~GGGa~~~~~~D~via~p~-A~~~v------~-~Peg~asil~~~~~~~~~Aae~----~~itA~~a~~~Gl  283 (339)
T 2f9y_A          216 VCTVIGEGGSGGALAIGVGDKVNMLQY-STYSV------I-SPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKL  283 (339)
T ss_dssp             EEEEEEEEEHHHHHTTCCCSEEEECTT-CEEES------S-CHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTS
T ss_pred             EEEEeCCcCcHHHHHHhccCeeeecCC-CEEEe------e-ccchHHHHHHHhhccHHHHHHH----cCCCHHHHHHcCC
Confidence            999999999999999999999999988 77874      3 5666666554443326666666    7799999999999


Q ss_pred             hhhhcCC
Q 026137          184 VEAAYDS  190 (243)
Q Consensus       184 v~~vv~~  190 (243)
                      ||+|++.
T Consensus       284 Vd~VV~e  290 (339)
T 2f9y_A          284 IDSIIPE  290 (339)
T ss_dssp             CSCCCCC
T ss_pred             eeEEecC
Confidence            9999984

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=99.38  E-value=2e-12  Score=104.52  Aligned_cols=156  Identities=18%  Similarity=0.114  Sum_probs=104.0

Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHH
Q 026137           12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRP   91 (243)
Q Consensus        12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (243)
                      +|.++.+       ++..+.+.+.+.|..++.++.++ .|++.    .-|.|+++..                    ...
T Consensus        29 ii~l~G~-------I~~~~a~~i~~~L~~~~~~~~~k-~I~l~----InSPGG~v~a--------------------~~~   76 (208)
T 2cby_A           29 IIFLGSE-------VNDEIANRLCAQILLLAAEDASK-DISLY----INSPGGSISA--------------------GMA   76 (208)
T ss_dssp             EEEECSC-------BCHHHHHHHHHHHHHHHHHCSSS-CEEEE----EEECCBCHHH--------------------HHH
T ss_pred             EEEEcCE-------ECHHHHHHHHHHHHHHHhCCCCC-CEEEE----EECCCCCHHH--------------------HHH
Confidence            3566766       78899999999999999877666 45552    3455554332                    244


Q ss_pred             HHHHHhcCCCcEEEEECCccchhHHHHHHhcCE--EEEecCccceeccccccCCCCC--hhh-------------HHHHH
Q 026137           92 LVAAMMDLPMPTVAAVNGHAAAAGFILALSHDY--VVMRRDKGVLYMSEVDIGLTLP--DYC-------------AALFR  154 (243)
Q Consensus        92 l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~--~ia~~~~a~f~~p~~~~G~~~p--~~g-------------~~~l~  154 (243)
                      ++..|..+++||++.+.|.|.++|..++++||.  |++.++ +.++.....-|..-+  +..             ...+.
T Consensus        77 I~~~i~~~~~pV~~~v~g~AaS~g~~Ia~agd~~~~~a~p~-a~igih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a  155 (208)
T 2cby_A           77 IYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPH-ARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNA  155 (208)
T ss_dssp             HHHHHHHCSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTT-CEEECCCC----------CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCEEEEECcEeHHHHHHHHhCCCcCCEEEcCC-cEEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666777889999999999999999999999998  999987 778766544222000  000             01133


Q ss_pred             HHhCC-HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHH
Q 026137          155 EKVGS-ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMR  200 (243)
Q Consensus       155 ~~~g~-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~  200 (243)
                      +..|. .....+++..|..++++||+++||||++.+..+++++...+
T Consensus       156 ~~~g~~~~~i~~~~~~~~~~ta~eA~e~GLvD~i~~~~~~ll~~~~~  202 (208)
T 2cby_A          156 EFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAHVNGEAQLE  202 (208)
T ss_dssp             HHHCCCHHHHHHHHHTTCEEEHHHHHHHTSCSEECSCC---------
T ss_pred             HHhCcCHHHHHHHHhCCcEEcHHHHHHcCCCcEecCchHHHHHHHHH
Confidence            44441 33455678889999999999999999999876666655443

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=98.99  E-value=2.1e-08  Score=90.49  Aligned_cols=225  Identities=18%  Similarity=0.126  Sum_probs=163.9

Q ss_pred             eeeeCCEEEEEEcCCCCCCC-----------CCCCHHHHHHHHHHHHHHH-hcCCCCEEEEEecCCCccccCCChhhHHH
Q 026137            4 SEKHGDVFVLTLTGSSNVDE-----------HRLGPSAIDSILSAIAQAK-AEATPGSAFITTSHGKFFSNGFDLAWAQA   71 (243)
Q Consensus         4 ~~~~~~v~~i~ln~p~~~~~-----------N~l~~~~~~~l~~~l~~~~-~~~~~~~~vvl~g~g~~F~~G~D~~~~~~   71 (243)
                      +++..+++.++...|...+.           +.+...|-.||.++|-.+. +++++. ..++...|       |......
T Consensus       272 i~ra~r~a~~~~~g~~~a~~~~ld~i~aa~~~~~~l~~~~el~~All~l~~ne~~~~-~~~~~t~g-------~~~~~~~  343 (556)
T 2w3p_A          272 IDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVG-TWVFRTEG-------DARHLLA  343 (556)
T ss_dssp             EETTTTEEEEEEECCSSCCCCSHHHHHHHGGGSHHHHHHHHHHHHHHHHHHHCSSCC-EEEEEEES-------CHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCchhhHHHHHHhhhcchhhhhhhHHHHHHHhhhhccHHHh-HhhhhccC-------CHHHHhh
Confidence            34566888888888751111           2334568889988888777 456887 67766655       3333321


Q ss_pred             c---CCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEC-Cccchh-HHHHHHhcCEEEEec---C---ccceeccccc
Q 026137           72 A---GSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVN-GHAAAA-GFILALSHDYVVMRR---D---KGVLYMSEVD  140 (243)
Q Consensus        72 ~---~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~-G~~~G~-G~~lal~~D~~ia~~---~---~a~f~~p~~~  140 (243)
                      .   .....+.....+....+.+.+.++.-.+.-+++.|. |.|+.| -+||+++||..|+-+   +   ...+.+.+.+
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (556)
T 2w3p_A          344 ADASLMQHKDHWFVRETIGLLRRTLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEVN  423 (556)
T ss_dssp             HHHHHHHTTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEECTTCCEEGGGHHHHHTSSEEEECCCTTCTTTSCCEECCGGG
T ss_pred             hHHHHHhccchHHHHHHHHHHHHHHHHhcccchhheeeecCCcchHHHHHHHHHHhhhhhhhcCCCCCCCCceeEeeccc
Confidence            1   000111334566777889999999999999999996 999655 479999999999864   1   3678899999


Q ss_pred             cCCCCChhh-HHHHHHHhCCHHHHHHH--HhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHH
Q 026137          141 IGLTLPDYC-AALFREKVGSATARRDV--LLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAE  217 (243)
Q Consensus       141 ~G~~~p~~g-~~~l~~~~g~~~~a~~l--~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~  217 (243)
                      +|. +|..- -.+|.+++-......+.  -..|+++++++|.++|||+...++ =+++++.+-..++.++.+  |.++..
T Consensus       424 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~  499 (556)
T 2w3p_A          424 FGL-YPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPDD-IDWADEIRIALEERAAMS--PDALTG  499 (556)
T ss_dssp             GTT-SCCTTSSCHHHHHTTTCHHHHHHHHTTTTSCBCHHHHHHTTSSSBCCCT-TTHHHHHHHHHHHHHHSC--HHHHHH
T ss_pred             cCc-ccCCCchhHHHHHhcCCcchHHHHHHHhCCCCCHHHHHhcCCeecCccc-CChHHHHHHHHHHHhccC--cchhcc
Confidence            999 78774 46888775423322222  245999999999999999988877 569999999999999998  999999


Q ss_pred             HHHhhchhHHHHHhh---hHHHHhhc
Q 026137          218 IRKSLYPDLCGVLGL---DIKAVFSN  240 (243)
Q Consensus       218 ~K~~l~~~~~~~l~~---~~~~~~~~  240 (243)
                      +...++-.--|.++.   .+..+|.|
T Consensus       500 ~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (556)
T 2w3p_A          500 LEANLRFNGPETMETRIFGRLTAWQN  525 (556)
T ss_dssp             HHHHHSSCSCCCHHHHHHTHHHHHHH
T ss_pred             chhhcccCCchhhhhHHHHHhHHHHH
Confidence            999998877777775   45566654

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=98.99  E-value=2.2e-09  Score=85.60  Aligned_cols=139  Identities=15%  Similarity=0.088  Sum_probs=95.1

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026137           26 LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVA  105 (243)
Q Consensus        26 l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia  105 (243)
                      ++..+.+.+.+.|..++.++..+ .|++.    .=|.|+++..                    ...++..|..+++||++
T Consensus        35 I~~~~a~~i~~~L~~l~~~~~~~-~I~l~----InSPGG~v~a--------------------~~~I~~~i~~~~~pV~~   89 (193)
T 1yg6_A           35 VEDHMANLIVAQMLFLEAENPEK-DIYLY----INSPGGVITA--------------------GMSIYDTMQFIKPDVST   89 (193)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSS-CEEEE----EEECCBCHHH--------------------HHHHHHHHHHSSSCEEE
T ss_pred             EcHHHHHHHHHHHHHHHhcCCCC-CEEEE----EECcCCCHHH--------------------HHHHHHHHHhcCCCEEE
Confidence            78899999999999998776666 45553    3445554432                    23456667778899999


Q ss_pred             EECCccchhHHHHHHhcCE--EEEecCccceeccccccCCC--CChhhH-------------HHHHHHhCC-HHHHHHHH
Q 026137          106 AVNGHAAAAGFILALSHDY--VVMRRDKGVLYMSEVDIGLT--LPDYCA-------------ALFREKVGS-ATARRDVL  167 (243)
Q Consensus       106 ~v~G~~~G~G~~lal~~D~--~ia~~~~a~f~~p~~~~G~~--~p~~g~-------------~~l~~~~g~-~~~a~~l~  167 (243)
                      .+.|.|.++|.-++++||.  |++.++ +.++......|..  ..+...             ..+.+..|. .....+++
T Consensus        90 ~v~g~AaS~g~~Ia~ag~~~~r~a~p~-s~i~ih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~  168 (193)
T 1yg6_A           90 ICMGQAASMGAFLLTAGAKGKRFCLPN-SRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDT  168 (193)
T ss_dssp             EEEEEEETHHHHHHHTSCTTCEEECTT-CEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHT
T ss_pred             EEeeeHHHHHHHHHHCCCcCcEEEecC-cEEEEEeccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence            9999999999999999999  999988 7777544432221  001110             012233331 23444444


Q ss_pred             hcCcCCCHHHHHHcCchhhhcCC
Q 026137          168 LRAKKIKGEEALRMGLVEAAYDS  190 (243)
Q Consensus       168 l~g~~~~a~eA~~~Glv~~vv~~  190 (243)
                      -.+..++++||+++||||++.++
T Consensus       169 ~~~~~~ta~eA~~~GliD~i~~~  191 (193)
T 1yg6_A          169 ERDRFLSAPEAVEYGLVDSILTH  191 (193)
T ss_dssp             SSCEEEEHHHHHHHTSSSEECCC
T ss_pred             cCCeEEcHHHHHHcCCCCEecCC
Confidence            34555799999999999999875

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=98.98  E-value=1.2e-08  Score=81.71  Aligned_cols=146  Identities=16%  Similarity=0.132  Sum_probs=99.5

Q ss_pred             EEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHH
Q 026137           13 LTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPL   92 (243)
Q Consensus        13 i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l   92 (243)
                      |.++.|       ++..+.+.+...|..++.++..+ .|++.    .=|.|+++..                    ...+
T Consensus        30 I~l~g~-------I~~~~a~~i~~~L~~l~~~~~~~-~I~l~----InSPGG~v~~--------------------~~~I   77 (203)
T 3qwd_A           30 IMLGSQ-------IDDNVANSIVSQLLFLQAQDSEK-DIYLY----INSPGGSVTA--------------------GFAI   77 (203)
T ss_dssp             EEECSC-------BCHHHHHHHHHHHHHHHHHCSSS-CEEEE----EEECCBCHHH--------------------HHHH
T ss_pred             EEEcCE-------ECHHHHHHHHHHHHHHHhcCCCC-CEEEE----EeCCCCCHHH--------------------HHHH
Confidence            556665       89999999999999999876555 34442    2344444332                    2345


Q ss_pred             HHHHhcCCCcEEEEECCccchhHHHHHHhcC--EEEEecCccceeccccccCCC--CChhhH-------------HHHHH
Q 026137           93 VAAMMDLPMPTVAAVNGHAAAAGFILALSHD--YVVMRRDKGVLYMSEVDIGLT--LPDYCA-------------ALFRE  155 (243)
Q Consensus        93 ~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D--~~ia~~~~a~f~~p~~~~G~~--~p~~g~-------------~~l~~  155 (243)
                      +..+..+++||++.+.|.|.++|..++++||  .|++.++ +++......-|..  ..+.-.             ..+.+
T Consensus        78 ~~~i~~~~~~V~t~~~G~AaSag~~i~~ag~~g~r~~~p~-a~imiHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~  156 (203)
T 3qwd_A           78 YDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPN-AEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSE  156 (203)
T ss_dssp             HHHHHHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTT-CEEECCCCSSSTTTTSCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcEEEEeeeehhHHHHHHHcCCcCeEEEcCC-ceEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667778999999999999999999999999  6999988 7777644332220  111110             01223


Q ss_pred             HhC-CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCCh
Q 026137          156 KVG-SATARRDVLLRAKKIKGEEALRMGLVEAAYDSE  191 (243)
Q Consensus       156 ~~g-~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  191 (243)
                      +-| ......+++-...-++|+||+++||||+|+++.
T Consensus       157 ~tG~~~e~i~~~~~~d~~lta~EA~e~GliD~I~~~~  193 (203)
T 3qwd_A          157 RTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE  193 (203)
T ss_dssp             HHCCCHHHHHHHHTSCCCEEHHHHHHHTSCSEECCCC
T ss_pred             HhCCCHHHHHHHhhcCceecHHHHHHcCCcCEecCCc
Confidence            333 133445555555669999999999999999873

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=98.97  E-value=6.6e-09  Score=84.13  Aligned_cols=145  Identities=10%  Similarity=0.022  Sum_probs=96.6

Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHH
Q 026137           12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRP   91 (243)
Q Consensus        12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (243)
                      +|.++.|       ++..+.+.+...|..++.++. + .|++.    .=|.|+++..                    ...
T Consensus        41 iI~l~G~-------I~~~~a~~i~~~L~~l~~~~~-k-~I~l~----INSPGGsv~a--------------------~~~   87 (215)
T 2f6i_A           41 IIYLTDE-------INKKTADELISQLLYLDNINH-N-DIKIY----INSPGGSINE--------------------GLA   87 (215)
T ss_dssp             EEEECSC-------BCHHHHHHHHHHHHHHHHHCC-S-CEEEE----EEECCBCHHH--------------------HHH
T ss_pred             EEEEccE-------ECHHHHHHHHHHHHHHHhCCC-C-cEEEE----EECCCCCHHH--------------------HHH
Confidence            3566666       788899999999999876655 5 44442    2344554332                    244


Q ss_pred             HHHHHhcCCCcEEEEECCccchhHHHHHHhcCE--EEEecCccceeccccccCCC--CChhh--HH-----------HHH
Q 026137           92 LVAAMMDLPMPTVAAVNGHAAAAGFILALSHDY--VVMRRDKGVLYMSEVDIGLT--LPDYC--AA-----------LFR  154 (243)
Q Consensus        92 l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~--~ia~~~~a~f~~p~~~~G~~--~p~~g--~~-----------~l~  154 (243)
                      ++..|..+++||++.+.|.|.++|.-++++||.  |++.++ +.+++.....|..  ..+..  ..           .+.
T Consensus        88 I~~~i~~~~~pV~t~v~g~AAS~g~~Ia~agd~g~i~a~p~-s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya  166 (215)
T 2f6i_A           88 ILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPN-CRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLS  166 (215)
T ss_dssp             HHHHHHHSSSCEEEEEEEEECHHHHHHHHTSCTTCEEECTT-CEEESSCTTCSCC--------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCEEEEEeeEhHhHHHHHHHcCCcccEEEcCC-CEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            566677788999999999999999999999999  999988 7777554432221  01111  00           112


Q ss_pred             HHhCC-HHHHHHHHhcCcCCCHHHHHHcCchhhhcCC
Q 026137          155 EKVGS-ATARRDVLLRAKKIKGEEALRMGLVEAAYDS  190 (243)
Q Consensus       155 ~~~g~-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  190 (243)
                      +..|. .....+++-.+..++++||+++||||++.++
T Consensus       167 ~~~g~~~e~i~~~~~~~~~lta~eA~e~GLiD~I~~~  203 (215)
T 2f6i_A          167 SFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIET  203 (215)
T ss_dssp             HHHCCCHHHHHHHHHTTCEECHHHHHHHTSCSEECCC
T ss_pred             HHhCcCHHHHHHHHhCCeecCHHHHHHCCCCCEecCC
Confidence            22231 3344444444455799999999999999876

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=98.94  E-value=3.8e-09  Score=84.57  Aligned_cols=150  Identities=15%  Similarity=0.114  Sum_probs=99.0

Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHH
Q 026137           12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRP   91 (243)
Q Consensus        12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (243)
                      +|.++.|       ++..+.+.+...|..++.++..+ .|++.    .=|.|+++..                    ...
T Consensus        32 iI~l~g~-------I~~~~a~~i~~~L~~l~~~~~~~-~I~l~----INSpGG~v~~--------------------~~~   79 (201)
T 3p2l_A           32 IVFLNGE-------VNDHSANLVIAQLLFLESEDPDK-DIYFY----INSPGGMVTA--------------------GMG   79 (201)
T ss_dssp             EEEEESC-------BCHHHHHHHHHHHHHHHHHCSSS-CEEEE----EEECCBCHHH--------------------HHH
T ss_pred             EEEEcCE-------ECHHHHHHHHHHHHHHHhcCCCC-CEEEE----EECCCCCHHH--------------------HHH
Confidence            3556666       88999999999999998766555 34442    2344554332                    234


Q ss_pred             HHHHHhcCCCcEEEEECCccchhHHHHHHhcCE--EEEecCccceeccccccCCC--CChhh--H-----------HHHH
Q 026137           92 LVAAMMDLPMPTVAAVNGHAAAAGFILALSHDY--VVMRRDKGVLYMSEVDIGLT--LPDYC--A-----------ALFR  154 (243)
Q Consensus        92 l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~--~ia~~~~a~f~~p~~~~G~~--~p~~g--~-----------~~l~  154 (243)
                      ++..+..+++|+++.+.|.|.++|.-+++++|.  |++.++ +++......-|..  ..+..  +           ..+.
T Consensus        80 I~~~i~~~~~~v~t~~~G~AaS~g~~i~~ag~~g~r~~~p~-a~imiH~p~~~~~G~a~di~~~a~~l~~~~~~~~~~ya  158 (201)
T 3p2l_A           80 VYDTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPS-SQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLA  158 (201)
T ss_dssp             HHHHHHHSSSCEEEEEEEEEETHHHHHHHTSSTTCEEECTT-CEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCeEEEEcCEehhHHHHHHHcCccCCEEEcCC-CeEEEeccccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566677789999999999999999999999998  999987 7776554432220  00000  0           0112


Q ss_pred             HHhCC-HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHH
Q 026137          155 EKVGS-ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERV  194 (243)
Q Consensus       155 ~~~g~-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l  194 (243)
                      ++.|. .....+++-...-++|+||+++||||+|+++.++|
T Consensus       159 ~~tG~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~~~~l  199 (201)
T 3p2l_A          159 HHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVIESREAI  199 (201)
T ss_dssp             HHHCCCHHHHHHHTSSCEEEEHHHHHHHTSCSEECCCSCC-
T ss_pred             HHhCcCHHHHHHHhhcCeeecHHHHHHcCCccEecCCHHHh
Confidence            33331 23334444333447999999999999999875544

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=98.93  E-value=1.1e-08  Score=85.41  Aligned_cols=152  Identities=13%  Similarity=0.128  Sum_probs=98.7

Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHH
Q 026137           12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRP   91 (243)
Q Consensus        12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (243)
                      +|.++.+       ++..+.+.+...|..++.++..+ .|++.    .=|.|+++..                    ...
T Consensus        84 II~l~G~-------I~d~~a~~iiaqL~~l~~ed~~k-~I~L~----INSPGGsV~a--------------------g~a  131 (277)
T 1tg6_A           84 IVCVMGP-------IDDSVASLVIAQLLFLQSESNKK-PIHMY----INSPGGVVTA--------------------GLA  131 (277)
T ss_dssp             EEEEESS-------BCHHHHHHHHHHHHHHHHHCSSS-CEEEE----EEECCBCHHH--------------------HHH
T ss_pred             EEEEcCE-------ECHHHHHHHHHHHHHHHhcCCCC-CEEEE----EECCCCCHHH--------------------HHH
Confidence            3556655       78889999999999987655556 45552    2444554432                    234


Q ss_pred             HHHHHhcCCCcEEEEECCccchhHHHHHHhcCE--EEEecCccceeccccccCCCCC--hhhH--H-----------HHH
Q 026137           92 LVAAMMDLPMPTVAAVNGHAAAAGFILALSHDY--VVMRRDKGVLYMSEVDIGLTLP--DYCA--A-----------LFR  154 (243)
Q Consensus        92 l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~--~ia~~~~a~f~~p~~~~G~~~p--~~g~--~-----------~l~  154 (243)
                      ++..|..+++||++.+.|.|..+|.-++++||.  |++.++ +.++.....-|..-.  +...  .           .+.
T Consensus       132 Iyd~I~~~k~pV~t~v~G~AASaG~~Ia~Agd~gkr~a~P~-S~ImihqP~~g~~G~a~Di~~~a~ei~~~~~~~~~i~a  210 (277)
T 1tg6_A          132 IYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPN-SRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYA  210 (277)
T ss_dssp             HHHHHHHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTT-CEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCEEEEEccEeHHHHHHHHHCCCcCCEEEecC-CEEEEecccccccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556677788999999999999999999999998  999988 777755443332101  1100  0           112


Q ss_pred             HHhCC-HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHH
Q 026137          155 EKVGS-ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAE  196 (243)
Q Consensus       155 ~~~g~-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~  196 (243)
                      +..|. .....+++-.+..++++||+++||||+|....+++.+
T Consensus       211 ~~tG~~~e~i~~~~drd~~lta~EAle~GLID~I~~~~~~~~~  253 (277)
T 1tg6_A          211 KHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHPPQDGE  253 (277)
T ss_dssp             HHHCCCHHHHHHHHSSCEEECHHHHHHHTSCSEECSSCC----
T ss_pred             HHhCCCHHHHHHHHhcCcccCHHHHHHCCCCCEecCcchhhcc
Confidence            22331 2344444444566799999999999999977444433

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=98.47  E-value=1.7e-06  Score=80.01  Aligned_cols=86  Identities=16%  Similarity=0.130  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEecCCCccccC-CChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEC
Q 026137           30 AIDSILSAIAQAKAEATPGSAFITTSHGKFFSNG-FDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVN  108 (243)
Q Consensus        30 ~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G-~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~  108 (243)
                      .+.++.+.|+.++.|+.++ .|++.-    =|.| +++....                 .+.+.+..+....|||||.++
T Consensus        71 ~~~~i~~~L~~a~~d~~ik-~I~L~i----nspGgG~v~~~~-----------------~I~~~i~~~k~~gkpvva~~~  128 (593)
T 3bf0_A           71 SLFDIVNTIRQAKDDRNIT-GIVMDL----KNFAGGDQPSMQ-----------------YIGKALKEFRDSGKPVYAVGE  128 (593)
T ss_dssp             EHHHHHHHHHHHHHCTTCC-CEEEEC----TEEEECCHHHHH-----------------HHHHHHHHHHHTTCCEEEEES
T ss_pred             CHHHHHHHHHHHHhCCCce-EEEEEe----CCCCCCcHHHHH-----------------HHHHHHHHHHhcCCeEEEEEc
Confidence            4678899999999999999 788853    2444 5554322                 234455555666899999987


Q ss_pred             CccchhHHHHHHhcCEEEEecCccceecccc
Q 026137          109 GHAAAAGFILALSHDYVVMRRDKGVLYMSEV  139 (243)
Q Consensus       109 G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~  139 (243)
                      + +..+|+-|+++||.+++.+. +.++....
T Consensus       129 ~-aas~~y~lAsaad~i~~~P~-~~vg~~g~  157 (593)
T 3bf0_A          129 N-YSQGQYYLASFANKIWLSPQ-GVVDLHGF  157 (593)
T ss_dssp             C-EEHHHHHHHTTSSEEEECTT-CCEECCCC
T ss_pred             c-chhHHHHHHHhCCEEEECCC-ceEEEecc
Confidence            6 56788999999999999987 66665544

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=98.44  E-value=1.9e-06  Score=68.82  Aligned_cols=150  Identities=15%  Similarity=0.187  Sum_probs=96.5

Q ss_pred             EEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCC-EEEEEecCCCcccc-C---CChhhHHHcCCCcchHHHHHHHHH
Q 026137           13 LTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPG-SAFITTSHGKFFSN-G---FDLAWAQAAGSRTGARERVHYMFK   87 (243)
Q Consensus        13 i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~-~~vvl~g~g~~F~~-G---~D~~~~~~~~~~~~~~~~~~~~~~   87 (243)
                      |-|+.|       ++.++.+.+...|..++.++..+ ..+.|-+.|..--. |   +++                    .
T Consensus        31 ifl~~~-------I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v--------------------~   83 (205)
T 4gm2_A           31 IFLSSP-------IYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGI--------------------T   83 (205)
T ss_dssp             EEECSC-------CCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHH--------------------H
T ss_pred             EEECCE-------EcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCH--------------------H
Confidence            456766       89999999999999998643222 13555444411000 0   211                    2


Q ss_pred             HHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcC--EEEEecCccceeccccccCC---CCChhh--HH---------
Q 026137           88 SFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHD--YVVMRRDKGVLYMSEVDIGL---TLPDYC--AA---------  151 (243)
Q Consensus        88 ~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D--~~ia~~~~a~f~~p~~~~G~---~~p~~g--~~---------  151 (243)
                      ....++..+...+.||...+-|.|.+.|..|++++|  .|++.++ +++.+-....|.   ...+.-  +.         
T Consensus        84 aglaIyd~m~~~~~~V~t~~~G~AaS~as~il~aG~~gkR~~lP~-a~iMIHqP~~~~~~G~a~di~i~a~el~~~~~~i  162 (205)
T 4gm2_A           84 DVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKN-SSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKV  162 (205)
T ss_dssp             HHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTT-CEEEECCCCCCCCSSCCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEEEEeeehhHHHHHHhcCCCCCEEecCC-CEEEEecCcccccccCHHHHHHHHHHHHHHHHHH
Confidence            235566778888999999999999999999999999  5999988 667654433332   012221  01         


Q ss_pred             --HHHHHhCC-HHHHHHHHhcCcCCCHHHHHHcCchhhhcCC
Q 026137          152 --LFREKVGS-ATARRDVLLRAKKIKGEEALRMGLVEAAYDS  190 (243)
Q Consensus       152 --~l~~~~g~-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  190 (243)
                        .+.++-|. .....+++-...-++|+||+++||||+|+++
T Consensus       163 ~~iya~~TG~~~e~I~~~m~rd~~msa~EA~eyGlID~V~~~  204 (205)
T 4gm2_A          163 IEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEK  204 (205)
T ss_dssp             HHHHHHHHTCCHHHHHHHTTSCEEEEHHHHHHTTSCSEECCC
T ss_pred             HHHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCccEeecC
Confidence              12223331 2233444444556999999999999999976

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=98.31  E-value=9.4e-07  Score=81.15  Aligned_cols=160  Identities=17%  Similarity=0.144  Sum_probs=103.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026137           23 EHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMP  102 (243)
Q Consensus        23 ~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp  102 (243)
                      .-++.+.....+..+++.+.+..-+  +|.+.-     |.|+.+.+-..... .  ...   +.+ ...-..++.....|
T Consensus       118 gGs~g~~~~~Ki~r~~e~A~~~~lP--vI~l~d-----SgGArlqe~~~~l~-~--~~~---~g~-i~~~~~~ls~~giP  183 (587)
T 1pix_A          118 AGAWVPGQAECLLRASDTAKTLHVP--LVYVLN-----CSGVKFDEQEKVYP-N--RRG---GGT-PFFRNAELNQLGIP  183 (587)
T ss_dssp             TTEECTTHHHHHHHHHHHHHHHTCC--EEEEEC-----CCEECGGGHHHHSS-S--TTS---TTH-HHHHHHHHHHTTCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHcCCC--EEEEEe-----CCCCCccccchhcc-c--ccc---HHH-HHHHHHHHhCCCCC
Confidence            3478889999999999999987654  455543     45556544222100 0  000   011 11223456678899


Q ss_pred             EEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHH-HHHHHhCCHHHHHHHH-hcCcCCCHHH---
Q 026137          103 TVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAA-LFREKVGSATARRDVL-LRAKKIKGEE---  177 (243)
Q Consensus       103 ~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~-~l~~~~g~~~~a~~l~-l~g~~~~a~e---  177 (243)
                      +|++|.|+|.|||... ..||++|++++.+.+++.       -|..--. .-...++ ..+|.+++ .+|+.+++++   
T Consensus       184 ~Isvv~G~~~GGga~~-a~~d~vim~e~~a~i~~~-------GP~vi~~~~~~~~~d-~~~A~el~~~tge~v~~e~lgg  254 (587)
T 1pix_A          184 VIVGIYGTNPAGGGYH-SISPTVIIAHEKANMAVG-------GAGIMGGMNPKGHVD-LEYANEIADMVDRTGKTEPPGA  254 (587)
T ss_dssp             EEEEECSEEETHHHHH-HHSSSEEEEETTCEEESC-------CCTTCCSCCSSSSCC-HHHHHHHHHHHHTTCCCCCSSB
T ss_pred             EEEEEecCCcHHHHHH-HhcCceEEecCCcEEEec-------CHHHHhhhccccccc-hhHHHHHHHHhCCccChhhccc
Confidence            9999999999999999 999999998865666542       1211000 0012377 88899999 8898887665   


Q ss_pred             ----HHHcCchhhhcCChhHHHHHHHHHHHHH
Q 026137          178 ----ALRMGLVEAAYDSEERVAEASMRLGKQL  205 (243)
Q Consensus       178 ----A~~~Glv~~vv~~~~~l~~~a~~~a~~~  205 (243)
                          +.+.|++|.+++++++..+.++++...+
T Consensus       255 a~~h~~~~GvvD~vv~~e~~a~~~~r~~ls~l  286 (587)
T 1pix_A          255 VDIHYTETGFMREVYASEEGVLEGIKKYVGML  286 (587)
T ss_dssp             HHHHTTTSCCSCEEESSHHHHHHHHHHHHHTS
T ss_pred             HHHHHhhcCceeEecCCHHHHHHHHHHHHHhC
Confidence                2368999999999544555555554433

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=98.22  E-value=7.3e-05  Score=67.85  Aligned_cols=142  Identities=16%  Similarity=0.205  Sum_probs=95.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcC--C
Q 026137           23 EHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDL--P  100 (243)
Q Consensus        23 ~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~  100 (243)
                      .-++.....+.+..+++.+.++.-+  +|.+.-+|     |+-+.+-         .....    .+.+++.++..+  -
T Consensus       110 gGS~g~~~~~Ki~ra~e~A~~~~lP--~I~l~dSg-----GaRmqEg---------~~~l~----~~~~i~~~~~~~s~~  169 (530)
T 3iav_A          110 GGALGEVYGQKIVKVMDFALKTGCP--VVGINDSG-----GARIQEG---------VASLG----AYGEIFRRNTHASGV  169 (530)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHHTCC--EEEEECCC-----SBCGGGT---------HHHHH----HHHHHHHHHHHTTTT
T ss_pred             eEeccHHHHHHHHHHHHHHHHcCCC--EEEEEcCC-----Ccchhhh---------hhhHH----HHHHHHHHHHHHcCC
Confidence            4578999999999999999887544  56665433     3334221         11111    223333333222  3


Q ss_pred             CcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHH--
Q 026137          101 MPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEA--  178 (243)
Q Consensus       101 kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA--  178 (243)
                      .|+|+++.|+|.||+......||++|++++.+.+++       +             | +...+  -.+|+.+++++.  
T Consensus       170 iP~Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~~-------a-------------G-P~vi~--~~~ge~v~~e~LGG  226 (530)
T 3iav_A          170 IPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFI-------T-------------G-PDVIK--TVTGEDVGFEELGG  226 (530)
T ss_dssp             SCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEES-------S-------------C-HHHHH--HHHCCCCCHHHHHB
T ss_pred             CCEEEEEecCcchHHHHHHHhCCEEEEecCCcEEEe-------c-------------C-HHHHH--HHhCCcCChhhcch
Confidence            899999999999999988889999999987565543       1             2 22221  246778888775  


Q ss_pred             -----HHcCchhhhcCChhHHHHHHHHHHHHHhc
Q 026137          179 -----LRMGLVEAAYDSEERVAEASMRLGKQLAG  207 (243)
Q Consensus       179 -----~~~Glv~~vv~~~~~l~~~a~~~a~~~~~  207 (243)
                           ...|++|.+++++++..+.++++...+-.
T Consensus       227 a~~h~~~sGv~d~va~de~~a~~~~r~~ls~lp~  260 (530)
T 3iav_A          227 ARTHNSTSGVAHHMAGDEKDAVEYVKQLLSYLPS  260 (530)
T ss_dssp             HHHHHHTSCCCSEEESSHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHhccCceeEEecChHHHHHHHHHHHHhccc
Confidence                 68999999999855677777777776643

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=98.18  E-value=0.0001  Score=66.92  Aligned_cols=142  Identities=14%  Similarity=0.212  Sum_probs=92.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026137           23 EHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMP  102 (243)
Q Consensus        23 ~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp  102 (243)
                      .-++.....+.+..+++.+.+..-+  +|.+.-+     .|+.+.+-         ......+.+.+....+ + .-..|
T Consensus       118 gGS~g~~~~~Ki~ra~e~A~~~~lP--vI~l~dS-----GGARmqeg---------~~sl~~~~~i~~~~~~-~-s~~iP  179 (531)
T 3n6r_B          118 GGSVSETHSKKICKIMDMAMQNGAP--VIGINDS-----GGARIQEG---------VDSLAGYGEVFQRNIM-A-SGVVP  179 (531)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHHTCC--EEEEECC-----CCBCGGGT---------HHHHHHHHHHHHHHHH-T-TTTSC
T ss_pred             cccccHHHHHHHHHHHHHHHHcCCC--EEEEeCC-----CccccCcc---------cchhhhHHHHHHHHHH-H-hCCCC
Confidence            4578999999999999998887554  5555543     34444321         1111112222222221 1 23589


Q ss_pred             EEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHH----
Q 026137          103 TVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEA----  178 (243)
Q Consensus       103 ~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA----  178 (243)
                      +|+++.|+|.||+......||++|+.++++.+       |++             | +...+  -.+|+.+++++.    
T Consensus       180 ~Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a~i-------~~a-------------G-P~vI~--~~~ge~v~~E~LGGa~  236 (531)
T 3n6r_B          180 QISMIMGPCAGGAVYSPAMTDFIFMVKDSSYM-------FVT-------------G-PDVVK--TVTNEQVSAEELGGAT  236 (531)
T ss_dssp             EEEEECSCCBGGGGHHHHHSSEEEEETTTCBC-------BSS-------------C-HHHHH--HHHCCCCCHHHHHBHH
T ss_pred             EEEEEeCCcchHHHHHhhhCCEEEEecCCceE-------eec-------------C-HHHHH--HHhCCccChhhcchHH
Confidence            99999999999998877789999999864544       332             1 22211  246788899998    


Q ss_pred             ---HHcCchhhhcCChhHHHHHHHHHHHHH
Q 026137          179 ---LRMGLVEAAYDSEERVAEASMRLGKQL  205 (243)
Q Consensus       179 ---~~~Glv~~vv~~~~~l~~~a~~~a~~~  205 (243)
                         .+.|++|.+++++++..+.++++...+
T Consensus       237 ~h~~~sG~~d~v~~~e~~a~~~~r~lls~L  266 (531)
T 3n6r_B          237 THTRKSSVADAAFENDVEALAEVRRLVDFL  266 (531)
T ss_dssp             HHHHTTSCCSEEESSHHHHHHHHHHHHTTS
T ss_pred             HHhhccCcceEEeCCHHHHHHHHHHHHHhc
Confidence               899999999998555555555555444

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=98.05  E-value=0.0002  Score=60.09  Aligned_cols=145  Identities=8%  Similarity=0.018  Sum_probs=91.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026137           24 HRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPT  103 (243)
Q Consensus        24 N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~  103 (243)
                      -+++....+.+.++++.+.+..-+  +|.+..+|+     +-+.+-         ..... ........+.++.....|.
T Consensus       135 Gs~g~~~~~K~~r~ie~A~~~~lP--lI~l~dsgG-----ar~qEG---------i~sl~-q~aki~~~l~~~s~~~vP~  197 (285)
T 2f9i_B          135 GSMGSVIGEKICRIIDYCTENRLP--FILFSASGG-----ARMQEG---------IISLM-QMGKTSVSLKRHSDAGLLY  197 (285)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHTTCC--EEEEEEECS-----CCGGGH---------HHHHH-HHHHHHHHHHHHHHTTCCE
T ss_pred             CcCCHHHHHHHHHHHHHHHHcCCC--EEEEEeCCC-----cchhhh---------hhhHh-HHHHHHHHHHHHHcCCCCE
Confidence            479999999999999998887654  455554333     222220         01100 1122333455666788999


Q ss_pred             EEEECCccchhHHHH-HHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcC
Q 026137          104 VAAVNGHAAAAGFIL-ALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMG  182 (243)
Q Consensus       104 Ia~v~G~~~G~G~~l-al~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~G  182 (243)
                      |+++-|+|.||+... ++.+|++++.++ +.++       +.-|..    ....++ ...      .-+.-+++.+.+.|
T Consensus       198 Isvv~g~~~GG~~as~a~~~D~i~a~p~-A~i~-------~aGP~v----i~~~~~-~~~------~e~~~~Ae~~~~~G  258 (285)
T 2f9i_B          198 ISYLTHPTTGGVSASFASVGDINLSEPK-ALIG-------FAGRRV----IEQTIN-EKL------PDDFQTAEFLLEHG  258 (285)
T ss_dssp             EEEEEEEEEHHHHTTGGGCCSEEEECTT-CBEE-------SSCHHH----HHHHHT-SCC------CTTTTBHHHHHHTT
T ss_pred             EEEEeCCccHHHHHHhhhCCCEEEEeCC-cEEE-------EcCHHH----HHHHhc-ccc------hHhHhhHHHHHhcC
Confidence            999999999998644 789999999876 6554       322322    223333 211      11112477788999


Q ss_pred             chhhhcCChhHHHHHHHHHHHHH
Q 026137          183 LVEAAYDSEERVAEASMRLGKQL  205 (243)
Q Consensus       183 lv~~vv~~~~~l~~~a~~~a~~~  205 (243)
                      +||.|+++ +++.+...++...+
T Consensus       259 ~iD~Iv~~-~e~r~~l~~~L~~l  280 (285)
T 2f9i_B          259 QLDKVVHR-NDMRQTLSEILKIH  280 (285)
T ss_dssp             CCSEECCG-GGHHHHHHHHHHHT
T ss_pred             CccEEeCh-HHHHHHHHHHHHHh
Confidence            99999998 56666666665544

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=98.00  E-value=0.00036  Score=63.66  Aligned_cols=140  Identities=15%  Similarity=0.152  Sum_probs=89.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhc--CC
Q 026137           23 EHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMD--LP  100 (243)
Q Consensus        23 ~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~  100 (243)
                      .-++.....+.+..+++.+.++.-+  +|.+..     |.|+.+.+-.         ....    .+.+++.++..  -.
T Consensus       121 gGS~g~~~~~Ki~ra~e~A~~~~lP--~I~l~d-----SGGARmqeg~---------~sl~----~~~~i~~~~~~~s~~  180 (548)
T 2bzr_A          121 GGSLGEVYGEKIVKVQELAIKTGRP--LIGIND-----GAGARIQEGV---------VSLG----LYSRIFRNNILASGV  180 (548)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHHHTCC--EEEEEC-----CCSCCGGGTT---------HHHH----HHHHHHHHHHHTTTT
T ss_pred             cCCCChhHHHHHHHHHHHHHHcCCC--EEEEEc-----CCCCCchhHH---------HHHH----HHHHHHHHHHHhcCC
Confidence            4579999999999999999887554  566654     4455554321         1111    22333333333  34


Q ss_pred             CcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHH----
Q 026137          101 MPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGE----  176 (243)
Q Consensus       101 kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~----  176 (243)
                      .|.|+++.|+|.||+......||++|+.++.+.+       |++             | +...+  -.+|+.++.+    
T Consensus       181 iP~Isvv~gp~~GG~a~s~al~D~ii~~~~~a~i-------~~a-------------G-P~vI~--~~~ge~v~~e~lgg  237 (548)
T 2bzr_A          181 IPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQM-------FIT-------------G-PDVIK--TVTGEEVTMEELGG  237 (548)
T ss_dssp             SCEEEEECSEEESGGGHHHHHSSEEEEETTTCEE-------ESS-------------C-HHHHH--HHHCCCCCHHHHHB
T ss_pred             CcEEEEecCCCchHHHHHHHhCCeEEeccCceeE-------Eec-------------c-HHHHH--HHhCCcCChHhccc
Confidence            9999999999999998888899999999864544       332             2 22111  1245566653    


Q ss_pred             -H--HHHcCchhhhcCChhHHHHHHHHHHHHH
Q 026137          177 -E--ALRMGLVEAAYDSEERVAEASMRLGKQL  205 (243)
Q Consensus       177 -e--A~~~Glv~~vv~~~~~l~~~a~~~a~~~  205 (243)
                       +  +.+.|++|.+++++.++.+.+.++..-+
T Consensus       238 ae~h~~~sG~~d~vv~d~~~~~~~~r~lls~l  269 (548)
T 2bzr_A          238 AHTHMAKSGTAHYAASGEQDAFDYVRELLSYL  269 (548)
T ss_dssp             HHHHHHTSSCCSEEESSHHHHHHHHHHHHTTS
T ss_pred             HHHHhhccCceeEEeCCHHHHHHHHHHHHHhc
Confidence             3  2368999999998455655555555444

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=97.93  E-value=0.00075  Score=61.28  Aligned_cols=144  Identities=17%  Similarity=0.193  Sum_probs=94.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026137           23 EHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMP  102 (243)
Q Consensus        23 ~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp  102 (243)
                      .-++.....+.+..+++.+.++.-+  +|.+..     |.|+.+.+-.         .....+.+.+..+.. + .-..|
T Consensus       104 gGS~g~~~~~Ki~ra~e~A~~~~~P--~I~l~~-----SGGaRmqeg~---------~sl~~~~~i~~~~~~-~-s~~iP  165 (522)
T 1x0u_A          104 GGSLGETHANKIVRAYELALKVGAP--VVGIND-----SGGARIQEGA---------LSLEGYGAVFKMNVM-A-SGVIP  165 (522)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHHTCC--EEEEEC-----CCSBCGGGTH---------HHHHHHHHHHHHHHH-H-TTTSC
T ss_pred             CccccHHHHHHHHHHHHHHHHcCCC--EEEEEc-----CCCCChhHHH---------HHHHHHHHHHHHHHH-h-CCCCc
Confidence            4478999999999999999887544  566654     4455554321         111222222333332 2 34599


Q ss_pred             EEEEECCccchhHHHHHHhcCEEEEecCcc-ceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHH-----
Q 026137          103 TVAAVNGHAAAAGFILALSHDYVVMRRDKG-VLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGE-----  176 (243)
Q Consensus       103 ~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a-~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~-----  176 (243)
                      .|+++.|+|.||+......||++|+.++.+ .+       |++    |...+-.            .+|+.++.+     
T Consensus       166 ~Isvv~gp~~GG~a~s~~l~D~~i~~~~~a~~i-------~~a----GP~vI~~------------~~ge~~~~e~lgga  222 (522)
T 1x0u_A          166 QITIMAGPAAGGAVYSPALTDFIIMIKGDAYYM-------FVT----GPEITKV------------VLGEEVSFQDLGGA  222 (522)
T ss_dssp             EEEEECSEEEGGGGHHHHHSSEEEEECSTTCEE-------ESS----CHHHHHH------------TTCCCCCHHHHHBH
T ss_pred             EEEEEcCCCchHHHHHHhcCCeEEEecCCccEE-------Eec----CHHHHHH------------HhCCcCChhhcchH
Confidence            999999999999998889999999998744 44       332    1111211            345566653     


Q ss_pred             HH--HHcCchhhhcCChhHHHHHHHHHHHHHhc
Q 026137          177 EA--LRMGLVEAAYDSEERVAEASMRLGKQLAG  207 (243)
Q Consensus       177 eA--~~~Glv~~vv~~~~~l~~~a~~~a~~~~~  207 (243)
                      +.  .+.|++|.+++++.++.+.+.++..-+-.
T Consensus       223 e~~~~~~G~~d~vv~~~~~~~~~~~~ll~~lp~  255 (522)
T 1x0u_A          223 VVHATKSGVVHFMVDSEQEAINLTKRLLSYLPS  255 (522)
T ss_dssp             HHHHHTTCCCSEEESCHHHHHHHHHHHHHHSCS
T ss_pred             HHHhhcCceeEEEeCCHHHHHHHHHHHHHhccc
Confidence            32  26899999999856677777777766643

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=97.91  E-value=0.00058  Score=62.01  Aligned_cols=142  Identities=15%  Similarity=0.234  Sum_probs=92.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026137           23 EHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMP  102 (243)
Q Consensus        23 ~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp  102 (243)
                      .-++.....+.+..+++.+.++.-+  +|.+..     |.|+.+.+-.         .....+.+.+..+.+ + .-..|
T Consensus       108 gGS~g~~~~~Ki~ra~e~A~~~~lP--~I~l~~-----SGGARmqeg~---------~sl~~~~~i~~~~~~-~-s~~iP  169 (523)
T 1on3_A          108 GGSAGETQSTKVVETMEQALLTGTP--FLFFYD-----SGGARIQEGI---------DSLSGYGKMFFANVK-L-SGVVP  169 (523)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHHTCC--EEEEEE-----ECSBCGGGTH---------HHHHHHHHHHHHHHH-H-TTTSC
T ss_pred             CCcCcHHHHHHHHHHHHHHHHcCCC--EEEEEc-----CCCCChhhHH---------HHHHHHHHHHHHHHH-h-cCCCC
Confidence            4578999999999999999887554  555554     5556554321         111222222333332 2 33499


Q ss_pred             EEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHH-----H
Q 026137          103 TVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGE-----E  177 (243)
Q Consensus       103 ~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~-----e  177 (243)
                      .|+++.|+|.||+......||++|+.++ +.++       ++    |...+-.            .+|+.++.+     |
T Consensus       170 ~Isvv~gp~~GG~a~s~~l~D~ii~~~~-a~i~-------~a----GP~vI~~------------~~ge~~~~e~lggae  225 (523)
T 1on3_A          170 QIAIIAGPCAGGASYSPALTDFIIMTKK-AHMF-------IT----GPQVIKS------------VTGEDVTADELGGAE  225 (523)
T ss_dssp             EEEEEEEEEESGGGHHHHHSSEEEEETT-CEEE-------SS----CHHHHHH------------HHCCCCCHHHHHSHH
T ss_pred             EEEEEcCCCchHHHHHHhhCCeEEEeCC-CEEE-------ec----CHHHHHH------------HhCCcCChHhcccHH
Confidence            9999999999999988899999999987 6554       32    1111211            245566653     3


Q ss_pred             HH--HcCchhhhcCChhHHHHHHHHHHHHHh
Q 026137          178 AL--RMGLVEAAYDSEERVAEASMRLGKQLA  206 (243)
Q Consensus       178 A~--~~Glv~~vv~~~~~l~~~a~~~a~~~~  206 (243)
                      ..  +.|++|.+++++.++.+.+.++..-+-
T Consensus       226 ~h~~~~G~vd~vv~d~~~~~~~~r~lL~~lp  256 (523)
T 1on3_A          226 AHMAISGNIHFVAEDDDAAELIAKKLLSFLP  256 (523)
T ss_dssp             HHHHTTCCCSEEESSHHHHHHHHHHHHHTSC
T ss_pred             HHhhccCceEEEeCCHHHHHHHHHHHHHhcC
Confidence            23  689999999985567676666665554

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=97.90  E-value=0.00029  Score=64.18  Aligned_cols=146  Identities=18%  Similarity=0.160  Sum_probs=92.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026137           23 EHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMP  102 (243)
Q Consensus        23 ~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp  102 (243)
                      .-++.+.....+..+++.+.+..-+  +|.+.-+|+...     ..-..... .. ..    +.+ ...-..++.....|
T Consensus       134 gGS~g~~~~~Ki~ra~e~A~~~~lP--vI~l~dSgGARl-----~~q~~~~~-~~-~~----~~~-i~~~~~~ls~~giP  199 (555)
T 3u9r_B          134 GGTYYPLTVKKHLRAQAIALENRLP--CIYLVDSGGANL-----PRQDEVFP-DR-EH----FGR-IFFNQANMSARGIP  199 (555)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHHTCC--EEEEECCCCBCG-----GGGGGTSS-ST-TS----TTH-HHHHHHHHHHTTCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHcCCC--EEEEECCCCCCC-----CCcceeec-cc-cc----HHH-HHHHHHHHhcCCCC
Confidence            3478999999999999999987554  455554443332     11000000 00 00    000 11112234557899


Q ss_pred             EEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHH----
Q 026137          103 TVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEA----  178 (243)
Q Consensus       103 ~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA----  178 (243)
                      +|++|.|+|.|||......||++|+.++.+.+       ++.             | +...+  ..+|+.+++++.    
T Consensus       200 ~Isvv~G~~~GGga~~~a~~d~vim~e~~a~i-------~~a-------------G-P~vik--~~~ge~~~~e~LGGa~  256 (555)
T 3u9r_B          200 QIAVVMGSCTAGGAYVPAMSDETVMVREQATI-------FLA-------------G-PPLVK--AATGEVVSAEELGGAD  256 (555)
T ss_dssp             EEEEECSCCBGGGGHHHHTSSEEEEETTTCBC-------BSS-------------C-HHHHH--HHHCCCCCHHHHHBHH
T ss_pred             EEEEEecCCCccHHHHHHhCCceEEecCCceE-------EEc-------------c-HHHHH--HHhcCccChhhccchh
Confidence            99999999999999999999999988765543       332             1 22111  247889999988    


Q ss_pred             ---HHcCchhhhcCChhHHHHHHHHHHHHH
Q 026137          179 ---LRMGLVEAAYDSEERVAEASMRLGKQL  205 (243)
Q Consensus       179 ---~~~Glv~~vv~~~~~l~~~a~~~a~~~  205 (243)
                         .+.|++|.+++++++....++++...+
T Consensus       257 ~h~~~sGv~d~v~~de~~a~~~~r~~ls~L  286 (555)
T 3u9r_B          257 VHCKVSGVADHYAEDDDHALAIARRCVANL  286 (555)
T ss_dssp             HHHHTTCSCSEEESSHHHHHHHHHHHHHTS
T ss_pred             hhhhccCceeEEeCCHHHHHHHHHHHHHhC
Confidence               789999999998544444555554443

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=97.78  E-value=0.0012  Score=59.99  Aligned_cols=142  Identities=16%  Similarity=0.169  Sum_probs=88.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026137           23 EHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMP  102 (243)
Q Consensus        23 ~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp  102 (243)
                      .-++.....+.+.++++.+.+..-+  +|.+.-     |.|+-+.+-.         .....+.+.+.....  .....|
T Consensus       111 gGS~g~~~~~Ki~r~~e~A~~~~lP--vI~l~d-----SgGAR~qeg~---------~~l~g~~~~~~~~~~--~s~~iP  172 (527)
T 1vrg_A          111 GGSLGEMHAKKIVKLLDLALKMGIP--VIGIND-----SGGARIQEGV---------DALAGYGEIFLRNTL--ASGVVP  172 (527)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHHTCC--EEEEEE-----ECSBCGGGTH---------HHHHHHHHHHHHHHH--HTTTSC
T ss_pred             CccccHHHHHHHHHHHHHHHHcCCC--EEEEEC-----CCCCCccchh---------HHHHHHHHHHHHHHH--hCCCCC
Confidence            4478999999999999998887655  455543     3344443211         111122222333322  245699


Q ss_pred             EEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHH-----H
Q 026137          103 TVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGE-----E  177 (243)
Q Consensus       103 ~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~-----e  177 (243)
                      +|+++.|+|.|||......||++|+.++++.       ++++-|    ..+..            .+|+.++.+     +
T Consensus       173 ~Isvv~Gp~~GG~a~s~al~D~vi~~~~~a~-------i~~aGP----~vi~~------------~~ge~v~~e~lggae  229 (527)
T 1vrg_A          173 QITVIAGPCAGGAVYSPALTDFIVMVDQTAR-------MFITGP----NVIKA------------VTGEEISQEDLGGAM  229 (527)
T ss_dssp             EEEEEEEEEBGGGGHHHHHSSEEEEETTTCB-------CBSSCH----HHHHH------------HHCCCCCHHHHHBHH
T ss_pred             EEEEEeCCCchHHHHHHHcCCeEEEecCceE-------EEecCH----HHHHH------------HhCCCCCccccccHH
Confidence            9999999999999888889999999987444       344212    12222            234455542     3


Q ss_pred             HH--HcCchhhhcCChhHHHHHHHHHHHHH
Q 026137          178 AL--RMGLVEAAYDSEERVAEASMRLGKQL  205 (243)
Q Consensus       178 A~--~~Glv~~vv~~~~~l~~~a~~~a~~~  205 (243)
                      ..  +.|++|.+++++.++.+.+.++..-+
T Consensus       230 ~~~~~~G~vd~vv~d~~~~~~~~~~~Ls~l  259 (527)
T 1vrg_A          230 VHNQKSGNAHFLADNDEKAMSLVRTLLSYL  259 (527)
T ss_dssp             HHHHTSCCCSEEESSHHHHHHHHHHHHTTS
T ss_pred             HHhhcccceEEEecCHHHHHHHHHHHHHhc
Confidence            22  68999999998555666655554444

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=97.76  E-value=0.00024  Score=64.53  Aligned_cols=158  Identities=13%  Similarity=0.113  Sum_probs=99.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026137           24 HRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPT  103 (243)
Q Consensus        24 N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~  103 (243)
                      -+++++......+.++.+.+..-+  +|.+.-.+ .|..|.+-+.              ......+.+++..+.....|.
T Consensus       339 G~l~~~~~~K~ar~i~~a~~~~~P--lv~l~ds~-G~~~G~~~E~--------------~G~~~~~Ak~l~~~~~~~vP~  401 (522)
T 1x0u_A          339 GSIDIDAADKAARFIRFCDAFNIP--LISLVDTP-GYVPGTDQEY--------------KGIIRHGAKMLYAFAEATVPK  401 (522)
T ss_dssp             GCBCHHHHHHHHHHHHHHHHTTCC--EEEEEEEC-CBCCSHHHHH--------------TTHHHHHHHHHHHHHHCCSCE
T ss_pred             CCcCHHHHHHHHHHHHHHhhCCCC--EEEEecCC-CCCCchHHHH--------------HHHHHHHHHHHHHHHhCCCCE
Confidence            379999999999999988876444  45554322 2333321111              112345666788888999999


Q ss_pred             EEEECCccchhHHHHHHh----cCEEEEecCccceeccccccCCCCChhhHHHHHHH-hCCH----HHH-HHHHh--cCc
Q 026137          104 VAAVNGHAAAAGFILALS----HDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREK-VGSA----TAR-RDVLL--RAK  171 (243)
Q Consensus       104 Ia~v~G~~~G~G~~lal~----~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~-~g~~----~~a-~~l~l--~g~  171 (243)
                      |+.|-|.|.|||+.....    +|+++|.++ +.++       +.-|.+.+..+.+. +- .    ... .++.-  .-.
T Consensus       402 Isvi~g~~~GGg~~~~a~~a~~~D~v~a~p~-A~i~-------v~gpegaa~Il~r~~i~-~~~d~~~~~~~l~~~y~~~  472 (522)
T 1x0u_A          402 ITVIVRKSYGGAHIAMSIKSLGADLVYAWPT-AEIA-------VTGPEGAVRILYRKEIQ-QASNPDDVLKQRIAEYRKL  472 (522)
T ss_dssp             EEEEEEEEEHHHHHHTCCGGGTCSEEEECTT-CEEE-------SSCHHHHHHHHTSSSSS-SSSSSSSSSHHHHHHHHHH
T ss_pred             EEEEeCCcccHHHHHhcccccCCCEEEEeCC-CEEE-------ecCHHHHHHHHhhhhhh-cccCHHHHHHHHHHHHHHh
Confidence            999999999998865544    999999887 6554       42343333443322 11 1    000 11111  111


Q ss_pred             CCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcC
Q 026137          172 KIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR  208 (243)
Q Consensus       172 ~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~  208 (243)
                      .-++..+.+.|+||.|+++ .++.+...+..+.+..+
T Consensus       473 ~~~~~~~~~~G~iD~II~p-~~tR~~L~~~L~~~~~~  508 (522)
T 1x0u_A          473 FANPYWAAEKGLVDDVIEP-KDTRRVIVAGLEMLKTK  508 (522)
T ss_dssp             HSSSHHHHHTTSSSEECCG-GGHHHHHHHHHHHHTTC
T ss_pred             cCCHHHHHhcCCCcEeECH-HHHHHHHHHHHHHHhhc
Confidence            2566789999999999998 66776666666665443

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=97.63  E-value=0.0014  Score=59.53  Aligned_cols=158  Identities=15%  Similarity=0.128  Sum_probs=98.7

Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137           25 RLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV  104 (243)
Q Consensus        25 ~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I  104 (243)
                      .++++-.....+.++.+++..-+  +|.+--. ..|..|.+-+.              ........+++..+.....|+|
T Consensus       345 ~~~~~~~~Kaar~i~~a~~~~~P--lv~lvDt-pG~~~G~~~E~--------------~g~~~~~A~~~~a~~~~~vP~i  407 (527)
T 1vrg_A          345 VLDIDSSDKAARFIRFLDAFNIP--ILTFVDT-PGYLPGVAQEH--------------GGIIRHGAKLLYAYSEATVPKI  407 (527)
T ss_dssp             CBCHHHHHHHHHHHHHHHHTTCC--EEEEEEE-CCBCCCHHHHH--------------TTHHHHHHHHHHHHHHCCSCEE
T ss_pred             CCCHHHHHHHHHHHHHHhhcCCC--eEEEecC-CCCcCchhhHH--------------hHHHHHHHHHHHHHhcCCCCEE
Confidence            69999999999999888765443  3444322 22444442222              1234455677788888999999


Q ss_pred             EEECCccchhHHHHHHh----cCEEEEecCccceeccccccCCCCChhhHHHHHHH-h---CCHHHHHH-HHh--cCcCC
Q 026137          105 AAVNGHAAAAGFILALS----HDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREK-V---GSATARRD-VLL--RAKKI  173 (243)
Q Consensus       105 a~v~G~~~G~G~~lal~----~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~-~---g~~~~a~~-l~l--~g~~~  173 (243)
                      ++|-|.|.|||+.-...    +|+++|.++ +.++       +.-|.+.+..+.+. +   ..+...++ +.-  .-+.-
T Consensus       408 svI~g~~~gGg~~am~~~~~~~d~~~a~p~-a~~~-------Vm~pegaa~Il~r~~~~~~~d~~~~~~~~~~~y~~~~~  479 (527)
T 1vrg_A          408 TVILRKAYGGAYIAMGSKHLGADMVLAWPS-AEIA-------VMGPEGAANIIFKREIEASSNPEETRRKLIEEYKQQFA  479 (527)
T ss_dssp             EEEEEEEEHHHHHHTTCGGGTCSEEEECTT-CEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHTS
T ss_pred             EEEeCCcccHHHHHhcCCCCCCCEEEEcCC-CeEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHHhhC
Confidence            99999999888755544    899998877 6654       41233333333222 1   10111111 221  11236


Q ss_pred             CHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcC
Q 026137          174 KGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR  208 (243)
Q Consensus       174 ~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~  208 (243)
                      ++..+.+.|+||.|+++ .++.+...+..+.+..+
T Consensus       480 ~p~~~~~~g~iD~II~p-~~tR~~l~~~L~~l~~~  513 (527)
T 1vrg_A          480 NPYIAASRGYVDMVIDP-RETRKYIMRALEVCETK  513 (527)
T ss_dssp             SHHHHHHTTSSSEECCG-GGHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHcCCCCeeeCH-HHHHHHHHHHHHHHhcC
Confidence            77889999999999997 66666666666665544

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=97.42  E-value=0.0034  Score=56.98  Aligned_cols=157  Identities=13%  Similarity=0.081  Sum_probs=100.0

Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137           25 RLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV  104 (243)
Q Consensus        25 ~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I  104 (243)
                      .++++-.....+.++.++...-+  +|.+--. ..|..|.+-+.              .-..+...+++..+....+|+|
T Consensus       341 ~~~~~~a~Kaar~i~~~~~~~iP--lv~lvDt-pGf~~G~~~E~--------------~Gi~~~~A~~l~a~a~~~vP~i  403 (523)
T 1on3_A          341 CLDINASDKAAEFVNFCDSFNIP--LVQLVDV-PGFLPGVQQEY--------------GGIIRHGAKMLYAYSEATVPKI  403 (523)
T ss_dssp             CBCHHHHHHHHHHHHHHHHTTCC--EEEEEEE-CCBCCCHHHHH--------------TTHHHHHHHHHHHHHHCCSCEE
T ss_pred             CCCHHHHHHHHHHHHHHHhcCCC--eEEEEeC-CCcCcchHHHH--------------hhHHHHHHHHHHHHhcCCCCEE
Confidence            69999999999999888765433  3444322 23555553332              1234556777888889999999


Q ss_pred             EEECCccchhHHHHHHh----cCEEEEecCccceeccccccCCCCChhh-HHHHHHH-h---CCHHHHHH-HHh--cCcC
Q 026137          105 AAVNGHAAAAGFILALS----HDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREK-V---GSATARRD-VLL--RAKK  172 (243)
Q Consensus       105 a~v~G~~~G~G~~lal~----~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~-~---g~~~~a~~-l~l--~g~~  172 (243)
                      +.|-|.+.|||+.-...    +|+++|.++ +.++       + ++.-| +..+.+. +   ......++ +.-  .-+.
T Consensus       404 tvI~g~~~Ggg~~am~~~~~~~d~~~a~p~-a~~~-------V-m~pegaa~Il~r~~~~~~~d~~~~~~~~~~~y~~~~  474 (523)
T 1on3_A          404 TVVLRKAYGGSYLAMCNRDLGADAVYAWPS-AEIA-------V-MGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQNAF  474 (523)
T ss_dssp             EEEEEEEEHHHHHTTTCGGGTCSEEEECTT-CEEE-------S-SCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCcccHHHHHhcccCCCCCEEEEcCC-CeEE-------e-cCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHHhh
Confidence            99999999998865544    788888876 6554       4 33333 3333222 1   10111111 221  1112


Q ss_pred             CCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcC
Q 026137          173 IKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR  208 (243)
Q Consensus       173 ~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~  208 (243)
                      -++..+.+.|+||.|+++ .++.+...+..+.+..+
T Consensus       475 ~~p~~~a~~g~iD~II~p-~~tR~~l~~~L~~l~~~  509 (523)
T 1on3_A          475 NTPYVAAARGQVDDVIDP-ADTRRKIASALEMYATK  509 (523)
T ss_dssp             SSHHHHHHTTSSSEECCG-GGHHHHHHHHHHHGGGC
T ss_pred             CCHHHHHhcCCCCEeeCH-HHHHHHHHHHHHHHhcC
Confidence            667889999999999997 66766666666666544

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=97.39  E-value=0.003  Score=57.63  Aligned_cols=156  Identities=12%  Similarity=0.075  Sum_probs=95.8

Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137           25 RLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV  104 (243)
Q Consensus        25 ~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I  104 (243)
                      .++++-.....+.++.++...-+  +|.+--. ..|..|.+-++.              -..+...+++..+....+|+|
T Consensus       362 ~l~~~~a~Kaar~i~~a~~~~iP--lv~lvDt-~Gf~~G~~~E~~--------------Gi~~~ga~~l~a~~~~~VP~i  424 (548)
T 2bzr_A          362 CLDINASEKAARFVRTCDCFNIP--IVMLVDV-PGFLPGTDQEYN--------------GIIRRGAKLLYAYGEATVPKI  424 (548)
T ss_dssp             CBCHHHHHHHHHHHHHHHHTTCC--EEEEEEE-CCBCCCHHHHHT--------------THHHHHHHHHHHHHHCCSCEE
T ss_pred             CCCHHHHHHHHHHHHHHHhcCCC--EEEEeec-cCCCCChHHHHh--------------hHHHHHHHHHHHHhCCCCCEE
Confidence            79999999999999988765443  3433322 235555533321              123445667778888999999


Q ss_pred             EEECCccchhHHHHHH----hcCEEEEecCccceeccccccCCCCChhhH-HHHHHH-hCC-------HHHHH-HHHh--
Q 026137          105 AAVNGHAAAAGFILAL----SHDYVVMRRDKGVLYMSEVDIGLTLPDYCA-ALFREK-VGS-------ATARR-DVLL--  168 (243)
Q Consensus       105 a~v~G~~~G~G~~lal----~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~-~~l~~~-~g~-------~~~a~-~l~l--  168 (243)
                      +.|-|.+.|||+.-..    .+|++++.++ ++++       + +++-|+ ..+.+. +-.       ....+ ++.-  
T Consensus       425 svI~g~~~Ggg~~am~~~~~~~d~~~awp~-a~i~-------V-mgpegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~y  495 (548)
T 2bzr_A          425 TVITRKAYGGAYCVMGSKDMGCDVNLAWPT-AQIA-------V-MGASGAVGFVYRQQLAEAAANGEDIDKLRLRLQQEY  495 (548)
T ss_dssp             EEEEEEEEHHHHHHTTCGGGTCSEEEECTT-CEEE-------S-SCHHHHHHHHTCCC----------CHHHHHHHHHHH
T ss_pred             EEEeCCcchHHHHHhccccCCCCEEEEcCC-CEEE-------e-cCHHHHHHHHhhhHHhhhhcccccHHHHHHHHHHHH
Confidence            9999999998875553    3899999887 6554       3 333443 333221 110       00111 1221  


Q ss_pred             cCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhc
Q 026137          169 RAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAG  207 (243)
Q Consensus       169 ~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~  207 (243)
                      .-..-++..+.+.|+||.|+++ .++........+.+..
T Consensus       496 ~~~~~~p~~~a~~g~iD~II~p-~~tR~~l~~~L~~l~~  533 (548)
T 2bzr_A          496 EDTLVNPYVAAERGYVGAVIPP-SHTRGYIGTALRLLER  533 (548)
T ss_dssp             HHHHSBSHHHHHTTSSSEECCG-GGHHHHHHHHHHHTTT
T ss_pred             HHhhCCHHHHHhcCCCceeeCH-HHHHHHHHHHHHHHhc
Confidence            0112455779999999999997 5565555555555443

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=97.38  E-value=0.0029  Score=58.14  Aligned_cols=157  Identities=8%  Similarity=0.061  Sum_probs=102.8

Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137           25 RLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV  104 (243)
Q Consensus        25 ~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I  104 (243)
                      .++++-.....+.++.++.. .+= +|.+--. ..|..|.+-++              .-..+...+++..+..+.+|+|
T Consensus       386 ~l~~~~a~Kaarfi~~c~~~-~iP-lv~lvDt-pGf~~G~~~E~--------------~Gi~~~gA~~~~a~a~a~vP~i  448 (587)
T 1pix_A          386 KLYRQGLVKMNEFVTLCARD-RLP-IVWIQDT-TGIDVGNDAEK--------------AELLGLGQSLIYSIQTSHIPQF  448 (587)
T ss_dssp             EECHHHHHHHHHHHHHHHHT-TCC-EEEEECC-CEECCSHHHHH--------------TTHHHHHHHHHHHHHTCCCCEE
T ss_pred             CcCHHHHHHHHHHHHHhhcC-CCC-eEEEecC-CCCCCcHHHHH--------------HHHHHHHHHHHHHHHhCCCCEE
Confidence            68999999999999877654 433 4555433 34555553322              2245677889999999999999


Q ss_pred             EEECCccchhHHHHHHh----c--CEEEEecCccceeccccccCCCCChhhH-HHHHH-HhCCH---------HHH---H
Q 026137          105 AAVNGHAAAAGFILALS----H--DYVVMRRDKGVLYMSEVDIGLTLPDYCA-ALFRE-KVGSA---------TAR---R  164 (243)
Q Consensus       105 a~v~G~~~G~G~~lal~----~--D~~ia~~~~a~f~~p~~~~G~~~p~~g~-~~l~~-~~g~~---------~~a---~  164 (243)
                      +.|-|.+.|||+.-...    .  |++++.++ +.++       + +++-|+ ..+.+ ..- .         ..+   .
T Consensus       449 tvI~g~~~Ggg~~am~~~~~~~~~d~~~a~p~-A~~~-------V-m~pegaa~Il~r~~~~-~~~~~g~~~~~~~~~~~  518 (587)
T 1pix_A          449 EITLRKGTAAAHYVLGGPQGNDTNAFSIGTAA-TEIA-------V-MNGETAATAMYSRRLA-KDRKAGKDLQPTIDKMN  518 (587)
T ss_dssp             EEECSEEETTHHHHTTCTTCTTTEEEEEECTT-CEEE-------S-SCHHHHHHHHHHHHHH-HHHHTTCCCHHHHHHHH
T ss_pred             EEEcCCCccHHHHHhcCcccCcccceeeeccC-CeEe-------c-CCHHHHHHHHHhhhhh-hhhhcCCChHHHHHHHH
Confidence            99999999988544432    5  99999887 6664       4 344443 33322 111 1         000   1


Q ss_pred             HHH-hcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCC
Q 026137          165 DVL-LRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRK  209 (243)
Q Consensus       165 ~l~-l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~  209 (243)
                      ++. ..-+..++..|.+.|+||.|+++ .+.........+.+..++
T Consensus       519 ~~~~~y~~~~~p~~aa~~g~iD~VI~p-~~tR~~l~~~L~~~~~~~  563 (587)
T 1pix_A          519 NLIQAFYTKSRPKVCAELGLVDEIVDM-NKIRGYVEAFTEAAYQNP  563 (587)
T ss_dssp             HHHHHHHHTTSHHHHHHHTSSSEECCT-TTHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhCCHHHHHhcCCCccccCH-HHHHHHHHHHHHHHhcCC
Confidence            111 01125889999999999999998 667777666667666655

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=97.11  E-value=0.0068  Score=55.00  Aligned_cols=166  Identities=12%  Similarity=0.152  Sum_probs=102.8

Q ss_pred             EEEEEcCCCCCCCC--CCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHH
Q 026137           11 FVLTLTGSSNVDEH--RLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKS   88 (243)
Q Consensus        11 ~~i~ln~p~~~~~N--~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~   88 (243)
                      .-|.=|+|   ..|  .++++......+.++.++...-+  +|.+.-.++ |..|.+-++              ....+.
T Consensus       334 Vgvian~~---~~~~G~l~~~~a~Kaarfi~~c~~~~iP--lv~lvDtpG-f~~G~~~E~--------------~gi~~~  393 (530)
T 3iav_A          334 VGIVANQP---MQFAGCLDITASEKAARFVRTCDAFNVP--VLTFVDVPG-FLPGVDQEH--------------DGIIRR  393 (530)
T ss_dssp             EEEEEECT---TSGGGCBCHHHHHHHHHHHHHHHHTTCC--EEEEEEECC-BCCCHHHHH--------------TTHHHH
T ss_pred             EEEEEecC---cccCCCCCHHHHHHHHHHHHHHHhcCCC--EEEEeeCCC-CCccHHHHH--------------hhHHHH
Confidence            33444566   343  79999999999999887765433  444443322 666554322              234566


Q ss_pred             HHHHHHHHhcCCCcEEEEECCccchhHHHHHHh-----cCEEEEecCccceeccccccCCCCChhh-HHHHHHH-hCC--
Q 026137           89 FRPLVAAMMDLPMPTVAAVNGHAAAAGFILALS-----HDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREK-VGS--  159 (243)
Q Consensus        89 ~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~-----~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~-~g~--  159 (243)
                      ..+++..+....+|+|+.|-|.+.|||+ ++++     .|+++|.++ +.++       + +++-| +..+.+. +-.  
T Consensus       394 ~Ak~l~a~a~a~vP~itvI~g~~~GGa~-~am~~~~~~~d~~~awp~-a~~~-------V-m~~egaa~il~r~~~~~~~  463 (530)
T 3iav_A          394 GAKLIFAYAEATVPLITVITRKAFGGAY-VVMGSKHLGADLNLAWPT-AQIA-------V-MGAQGAVNILHRRTIADAG  463 (530)
T ss_dssp             HHHHHHHHHHCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTT-CEEE-------S-SCHHHHHHHHTSTTTSTTC
T ss_pred             HHHHHHHHHhCCCCEEEEEeCCcchHHH-HHhcCCCCCCCEEEEcCC-ceEe-------c-CCHHHHHHHHhhhhhhhcc
Confidence            7888899999999999999999998776 4443     799999887 6664       3 33333 3333222 210  


Q ss_pred             ---HHHHHHHHh--cCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhc
Q 026137          160 ---ATARRDVLL--RAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAG  207 (243)
Q Consensus       160 ---~~~a~~l~l--~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~  207 (243)
                         ...-.++.-  .-+.-++..|.+.|+||.|+++ .+.........+.+..
T Consensus       464 ~d~~~~~~~~~~~y~~~~~~p~~aa~~~~vD~VIdP-~~TR~~l~~~l~~~~~  515 (530)
T 3iav_A          464 DDAEATRARLIQEYEDALLNPYTAAERGYVDAVIMP-SDTRRHIVRGLRQLRT  515 (530)
T ss_dssp             TTCHHHHHHHHHHHHHHHSSSHHHHHTTSSSEECCG-GGHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHHhcCCHHHHHhcCCCCcccCH-HHHHHHHHHHHHHHhc
Confidence               011111111  1122477888999999999998 5555554444444433

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=97.02  E-value=0.013  Score=53.16  Aligned_cols=165  Identities=11%  Similarity=0.048  Sum_probs=99.9

Q ss_pred             EEEEcCCCCCCCC--CCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHH
Q 026137           12 VLTLTGSSNVDEH--RLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSF   89 (243)
Q Consensus        12 ~i~ln~p~~~~~N--~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~   89 (243)
                      -|.=|+|   ..|  .++++......+.++.++...- = +|.+--.+ .|..|.+-++              .-..+..
T Consensus       341 gvian~~---~~~~G~l~~~~a~Kaarfi~lcd~~~i-P-lv~lvDtp-Gf~~G~~~E~--------------~Gi~~~g  400 (531)
T 3n6r_B          341 GVVANQP---LVLAGCLDIDSSRKAARFVRFCDAFEI-P-LLTLIDVP-GFLPGTSQEY--------------GGVIKHG  400 (531)
T ss_dssp             EEEEECT---TTGGGCBCHHHHHHHHHHHHHHHHTTC-C-EEEEEEEC-SBCCSHHHHH--------------TTHHHHH
T ss_pred             EEEEecc---cccCCCCCHHHHHHHHHHHHHhhccCC-C-EEEEeCCC-CCCCCHHHHH--------------hhHHHHH
Confidence            3444566   343  6999999999999987776543 3 44443322 3444442222              2235667


Q ss_pred             HHHHHHHhcCCCcEEEEECCccchhHHHHHHh----cCEEEEecCccceeccccccCCCCChhh-HHHHHH-HhCCHHHH
Q 026137           90 RPLVAAMMDLPMPTVAAVNGHAAAAGFILALS----HDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFRE-KVGSATAR  163 (243)
Q Consensus        90 ~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~----~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~-~~g~~~~a  163 (243)
                      .+++..+....+|+|+.|-|.+.|||+.-...    +|+++|.++ +.++       + +++-| +..+.+ .+-.....
T Consensus       401 Ak~l~a~a~a~VP~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~-A~i~-------V-m~pegaa~Il~r~~~~~~~~~  471 (531)
T 3n6r_B          401 AKLLYAYGEATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPT-AEVA-------V-MGAKGATEIIHRGDLGDPEKI  471 (531)
T ss_dssp             HHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTT-CEEE-------S-SCHHHHHHHHCCTTTTSTTHH
T ss_pred             HHHHHHHHhCCCCEEEEEcCCccchhhhhccCccCCCCeEEEcCC-ceEe-------c-CCHHHHHHHHhcccccchhHH
Confidence            88889999999999999999999988755443    899999887 6554       3 33333 333322 12100000


Q ss_pred             HHHH--hcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHh
Q 026137          164 RDVL--LRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLA  206 (243)
Q Consensus       164 ~~l~--l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~  206 (243)
                      .++.  ..-+.-++..|.+.|+||.|+++ .+.........+.+.
T Consensus       472 ~~~~~~y~~~~~~p~~aa~~~~vD~vIdP-~~TR~~l~~~l~~~~  515 (531)
T 3n6r_B          472 AQHTADYEERFANPFVASERGFVDEVIQP-RSTRKRVARAFASLR  515 (531)
T ss_dssp             HHHHHHHHHHHSSSHHHHHHTSSSEECCG-GGHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhcCHHHHHhcCccCcccCH-HHHHHHHHHHHHHHh
Confidence            1111  11122566778899999999998 555555444444333

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=96.66  E-value=0.025  Score=51.92  Aligned_cols=164  Identities=13%  Similarity=0.139  Sum_probs=89.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026137           23 EHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMP  102 (243)
Q Consensus        23 ~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp  102 (243)
                      .-++.+...+.+.++++.+.+..-+  +|.+.-+|+.+..  +-++.... .    ..    +.+-+. -...+.....|
T Consensus       119 gGS~g~~~~~Ki~Ra~e~A~~~~lP--vI~l~dSgGArl~--~qe~~~~~-l----~~----~g~if~-~~~~ls~~~iP  184 (588)
T 3gf3_A          119 AGAWVPGQAENLIRCSDAAKMMHLP--LIYLLNCSGVEFP--NQDKVYPN-R----RG----GGTPFF-RNSELNQLGIP  184 (588)
T ss_dssp             GGCBCTTHHHHHHHHHHHHHHHTCC--EEEEECCCCBCGG--GHHHHSSS-T----TS----TTHHHH-HHHHHHHTTCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCC--EEEEEcCCCcCcc--cccccccc-h----hh----HHHHHH-HHHHHhcCCCC
Confidence            3478888999999999999887554  4555544433331  00111000 0    00    001111 12234456899


Q ss_pred             EEEEECCccchhHHHHHHhcCEEEEecCccceeccccc--cCCCCChhhHHHHHHH---hCCHHHHHHHHhcCcCCCHHH
Q 026137          103 TVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVD--IGLTLPDYCAALFREK---VGSATARRDVLLRAKKIKGEE  177 (243)
Q Consensus       103 ~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~--~G~~~p~~g~~~l~~~---~g~~~~a~~l~l~g~~~~a~e  177 (243)
                      +|+++-|+|.|||...++++|++++.++ +.+++....  -|+ .|.  ..+.+.-   +. .....+-..+.+.+.+.+
T Consensus       185 ~Isvv~Gp~~gGgAy~a~~~~vim~~~~-a~i~~aGP~vI~~~-~p~--g~~~~~~~~~~~-~~~~ge~~vs~eeLGGa~  259 (588)
T 3gf3_A          185 VIVGIYGTNPAGGGYHSISPTILIAHQD-ANMAVGGAGILSGM-NPK--GYIDDEAAEQII-AAQIENSKLKVPAPGSVP  259 (588)
T ss_dssp             EEEEECSEEETHHHHHHHSSSEEEEETT-CEEESSCCC------------------CHHHH-HHHHHHHHTTCCCTTBHH
T ss_pred             EEEEEeCCCCchhhhHhhCCeEEEEECC-cEEEecChhhhccc-Ccc--ccccccchhhhh-hhhccccccChhhccchh
Confidence            9999999999998866888888888766 656543221  111 010  0111111   11 111122224666777777


Q ss_pred             HH--HcCchhhhcCChhHHHHHHHHHHHHH
Q 026137          178 AL--RMGLVEAAYDSEERVAEASMRLGKQL  205 (243)
Q Consensus       178 A~--~~Glv~~vv~~~~~l~~~a~~~a~~~  205 (243)
                      ..  ..|++|.+++++++..+.++++..-+
T Consensus       260 ~h~~~sGv~d~~a~de~~al~~~r~~ls~L  289 (588)
T 3gf3_A          260 IHYDETGFFREVYQNDLGVIDGIKKYISYL  289 (588)
T ss_dssp             HHTTTSCCSCEEESSHHHHHHHHHHHHHTS
T ss_pred             hhccccccceEEeCCHHHHHHHHHHHHHhC
Confidence            66  58999999998555555555555444

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=96.49  E-value=0.043  Score=50.01  Aligned_cols=157  Identities=14%  Similarity=0.035  Sum_probs=94.7

Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137           25 RLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV  104 (243)
Q Consensus        25 ~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I  104 (243)
                      .++++......+.++.++...-+  +|.+.-.+ .|..|.+-++              .-..+...+++..+....+|+|
T Consensus       367 ~l~~~~a~Kaarfi~~c~~~~iP--lv~lvDtp-Gf~~G~~~E~--------------~Gi~~~gAk~~~a~~~a~vP~i  429 (555)
T 3u9r_B          367 ILFAEAAQKGAHFIELACQRGIP--LLFLQNIT-GFMVGQKYEA--------------GGIAKHGAKLVTAVACARVPKF  429 (555)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHTCC--EEEEEEEC-CBCCSHHHHH--------------TTHHHHHHHHHHHHHHCCSCEE
T ss_pred             ccCHHHHHHHHHHHHHHhcCCCC--EEEEecCc-CCCCCHHHHH--------------HHHHHHHHHHHHHHHhCCCCEE
Confidence            58999999999999888765433  45554433 2555543222              1234567888889999999999


Q ss_pred             EEECCccchhHHHHHH----hcCEEEEecCccceeccccccCCCCChhh-HHHHH---HH-h---C---CHH--HH-HH-
Q 026137          105 AAVNGHAAAAGFILAL----SHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFR---EK-V---G---SAT--AR-RD-  165 (243)
Q Consensus       105 a~v~G~~~G~G~~lal----~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~---~~-~---g---~~~--~a-~~-  165 (243)
                      +.|-|.++|+|..-.+    .+|++++.++ +.++       + +++-| +..+.   ++ +   |   ...  .+ ++ 
T Consensus       430 tvi~g~~~Ggg~~am~~~~~~~d~~~a~p~-A~i~-------V-mgpegaa~il~~~~~~~~~~~g~~~~~~~~~~~~~~  500 (555)
T 3u9r_B          430 TVLIGGSFGAGNYGMCGRAYDPRFLWMWPN-ARIG-------V-MGGEQAAGVLAQVKREQAERAGQQLGVEEEAKIKAP  500 (555)
T ss_dssp             EEEEEEEETTHHHHTTCGGGCCSEEEECTT-CEEE-------S-SCHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHH
T ss_pred             EEEeCCccchhhHhhcCccCCCCeEEEcCC-cEEE-------c-CCHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHHH
Confidence            9999999988654332    3799999877 6665       3 33333 33322   10 0   0   000  00 00 


Q ss_pred             HH-hcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcC
Q 026137          166 VL-LRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR  208 (243)
Q Consensus       166 l~-l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~  208 (243)
                      +. ..-+..++-.|.+.|+||.|+++ .+.........+.+..+
T Consensus       501 ~~~~y~~~~~p~~aa~r~~vD~vIdP-~~TR~~l~~~l~~~~~~  543 (555)
T 3u9r_B          501 ILEQYEHQGHPYYSSARLWDDGVIDP-AQTREVLALALSAALNA  543 (555)
T ss_dssp             HHHHHHHHHSHHHHHHTTSSSCBCCG-GGHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHhCCHHHHhhccccCcccCh-HHHHHHHHHHHHHHhcC
Confidence            11 01122477778889999999998 55555544444444444

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=96.28  E-value=0.0016  Score=61.51  Aligned_cols=86  Identities=13%  Similarity=0.064  Sum_probs=55.0

Q ss_pred             CCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHH--HHHHHhcCcCCCHH
Q 026137           99 LPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATA--RRDVLLRAKKIKGE  176 (243)
Q Consensus        99 ~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~--a~~l~l~g~~~~a~  176 (243)
                      ...|+|++|.|+|.|||..++..||++|+.++ +.+       +++-|    ..+-..+| ...  ..+- +.|-    +
T Consensus       258 ~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~-a~i-------~ltGp----~vi~~~~G-e~vy~s~e~-LGGa----~  319 (793)
T 2x24_A          258 DEIVTISMVSCRALGIGAYLVRLGQRVIQVEN-SHI-------ILTGA----TALNKVLG-RDVYTSNNQ-LGGV----Q  319 (793)
T ss_dssp             HHSCEEEEECSEEETHHHHHHHHTCCEEEETT-CEE-------ESSCH----HHHHHHHS-SCCCSCHHH-HHSH----H
T ss_pred             CCCCEEEEEecCCchHHHHHHhhCCeEEEecc-ccE-------EecCH----HHHHHhcC-CcccCChhh-hccH----H
Confidence            46999999999999999999999999999987 533       33222    22333334 211  0111 1111    1


Q ss_pred             HHHHcCchhhhcCChhHHHHHHHHHH
Q 026137          177 EALRMGLVEAAYDSEERVAEASMRLG  202 (243)
Q Consensus       177 eA~~~Glv~~vv~~~~~l~~~a~~~a  202 (243)
                      -..+.|++|.+++++.+..+.++++.
T Consensus       320 v~~~~Gv~d~vv~dd~ea~~~ir~~L  345 (793)
T 2x24_A          320 IMHHNGVSHVTVPDDFEGVCTILEWL  345 (793)
T ss_dssp             HHTTTTSCSEEESSHHHHHHHHHHHH
T ss_pred             HHHhcCceEEEeCCHHHHHHHHHHHH
Confidence            15579999999998444444544443

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=96.07  E-value=0.0035  Score=58.74  Aligned_cols=80  Identities=11%  Similarity=0.022  Sum_probs=53.4

Q ss_pred             CCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCC--CHH
Q 026137           99 LPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKI--KGE  176 (243)
Q Consensus        99 ~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~--~a~  176 (243)
                      ...|+|++|.|+|.|||..+...||++|+.++ +.       ++++-|.    .+-..            +|+.+  +.+
T Consensus       245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~-s~-------ifltGP~----vIk~~------------tGeeV~~s~e  300 (758)
T 3k8x_A          245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEG-QP-------IILTGAP----AINKM------------LGREVYTSNL  300 (758)
T ss_dssp             TTSCEEEEECSCEETHHHHHHHHTCEEEEETT-CC-------EESSCHH----HHHHH------------HTSCCCSCTH
T ss_pred             cCCCEEEEEccCCchHHHHHHhhCCEEEEECC-ce-------EEEeCHH----HHHHH------------hCCccccCch
Confidence            56799999999999999999999999999987 42       3443222    22222            33333  222


Q ss_pred             H------HHHcCchhhhcCChhHHHHHHHHHH
Q 026137          177 E------ALRMGLVEAAYDSEERVAEASMRLG  202 (243)
Q Consensus       177 e------A~~~Glv~~vv~~~~~l~~~a~~~a  202 (243)
                      +      ..+.|.+|.+++++++..+.++++.
T Consensus       301 eLGGA~vh~~sGvad~va~dd~eal~~ir~lL  332 (758)
T 3k8x_A          301 QLGGTQIMYNNGVSHLTAVDDLAGVEKIVEWM  332 (758)
T ss_dssp             HHHSHHHHTTTTSSSEEESSHHHHHHHHHHHH
T ss_pred             hcchhhHHHhcCCeeEEecCHHHHHHHHHHHH
Confidence            2      2368999999998444444444443

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=95.95  E-value=0.1  Score=47.81  Aligned_cols=157  Identities=11%  Similarity=0.075  Sum_probs=100.8

Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137           25 RLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV  104 (243)
Q Consensus        25 ~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I  104 (243)
                      .++++-.....+.++.++... += +|.+.-. ..|..|.+-++              .-..+...+++.++.++.+|+|
T Consensus       388 ~l~~~~a~Kaarfi~lcd~f~-iP-lv~lvDt-pGf~~G~~aE~--------------~Gi~~~gAk~l~a~a~a~VP~i  450 (588)
T 3gf3_A          388 KLYRQGLIKMNEFVTLCARDR-IP-LIWLQDT-TGIDVGDEAEK--------------AELLGLGQSLIYSIENSKLPSL  450 (588)
T ss_dssp             EECHHHHHHHHHHHHHHHHTT-CC-EEEEECC-CEECCSHHHHH--------------TTHHHHHHHHHHHHHHHCSCEE
T ss_pred             CcCHHHHHHHHHHHHHhhhcC-CC-eEEEecC-CCCCCCHHHHH--------------HHHHHHHHHHHHHHHhCCCCEE
Confidence            688999999999998888753 33 4555433 34666653332              2245667888999999999999


Q ss_pred             EEECCccchhHHHHHHhc-------CEEEEecCccceeccccccCCCCChhh-HHHHH-HHhC-C----H------HHHH
Q 026137          105 AAVNGHAAAAGFILALSH-------DYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFR-EKVG-S----A------TARR  164 (243)
Q Consensus       105 a~v~G~~~G~G~~lal~~-------D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~-~~~g-~----~------~~a~  164 (243)
                      +.|-|.+.|||.. ++++       |+++|.++ +.+       ++ +++-| +..+. +.+- .    .      ....
T Consensus       451 tvI~g~~~Ggg~~-am~~~~~~~~~~~~~awp~-A~~-------sV-m~pEgaa~Il~~~~~~~~~~~~~~~~~~~~~~~  520 (588)
T 3gf3_A          451 EITIRKASAAAHY-VLGGPQGNNTNVFSIGTGA-CEY-------YV-MPGETAANAMYSRKLVKAKKAGEDLQPIIGKMN  520 (588)
T ss_dssp             EEESSEEETTHHH-HTTCTTCTTTEEEEEECTT-CEE-------ES-SCHHHHHHHHHHHHHHHC-------CHHHHHHH
T ss_pred             EEEcCCccHHHHH-HhcccccCCccceEEECCC-ceE-------Ee-CCHHHHHHHHhhhHHhhhhccccccchHHHHHH
Confidence            9999999988764 4443       37777766 555       44 34333 33332 2221 0    0      0011


Q ss_pred             HHH-hcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCC
Q 026137          165 DVL-LRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRK  209 (243)
Q Consensus       165 ~l~-l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~  209 (243)
                      ++. ..-+..++.-|.+.|+||.|+++ .+.......+++...+.|
T Consensus       521 ~~~~~y~~~~~p~~aA~r~~vD~VIdP-~~TR~~l~~~~~~~~~~p  565 (588)
T 3gf3_A          521 DMIQMYTDKSRPKYCTEKGMVDEIVDM-TEVRPYIQAFTEAAYQNP  565 (588)
T ss_dssp             HHHHHHHHTTSHHHHHHTTSSSEECCG-GGHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhCCHHHHHhcCCCCeeeCH-HHHHHHHHHHHHHHHcCC
Confidence            111 11224688999999999999998 667777777766665554

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=94.29  E-value=0.31  Score=46.09  Aligned_cols=89  Identities=13%  Similarity=0.143  Sum_probs=60.9

Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137           25 RLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV  104 (243)
Q Consensus        25 ~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I  104 (243)
                      .++++-.....+.++.++.. .+= +|.+--. ..|..|.+-+.              ....+...+++.++..+.+|+|
T Consensus       463 ~l~~~~a~KaarfI~~cd~f-~iP-lv~LvDt-pGf~~G~~aE~--------------~Gi~~~gAkll~A~a~a~VP~i  525 (793)
T 2x24_A          463 VWFPDSAYKTAQAIKDFNRE-KLP-LMIFANW-RGFSGGMKDMY--------------DQVLKFGAYIVDGLRKYRQPVL  525 (793)
T ss_dssp             EECHHHHHHHHHHHHHHHTT-TCC-EEEECCB-CEECCSHHHHH--------------TTHHHHHHHHHHHHHTCCSCEE
T ss_pred             cccHHHHHHHHHHHHHhccC-CCC-EEEEecC-CCCCCCHHHHH--------------hhHHHHHHHHHHHHHhcCCCEE
Confidence            58999999999999999754 333 4555433 44666653322              2345677889999999999999


Q ss_pred             EEE--CCccchhHHHHH---HhcCE--EEEecC
Q 026137          105 AAV--NGHAAAAGFILA---LSHDY--VVMRRD  130 (243)
Q Consensus       105 a~v--~G~~~G~G~~la---l~~D~--~ia~~~  130 (243)
                      +.|  .|.+.||++.++   +..|+  ++|.++
T Consensus       526 tvI~r~Ge~~GGa~~~~~~~~~~d~~ev~Awp~  558 (793)
T 2x24_A          526 IYIPPYAEVRGGSWAVMDTSINPLCIEMYADRE  558 (793)
T ss_dssp             EEECTTCEEEHHHHHTTCGGGSTTTEEEEEETT
T ss_pred             EEEecCCcccchhHHhhhcccCccHHHHhhhcc
Confidence            999  899887665333   23454  455444

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=93.52  E-value=0.83  Score=42.93  Aligned_cols=156  Identities=13%  Similarity=0.124  Sum_probs=82.6

Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137           25 RLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV  104 (243)
Q Consensus        25 ~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I  104 (243)
                      .++++-.....+.++.++....+= +|.+.-. ..|..|.+-++              ....+...+++.++..+.+|+|
T Consensus       448 ~l~pe~a~KaArfI~lcd~~f~iP-Lv~LvDt-pGf~~G~~aE~--------------~Gi~k~gAkll~A~a~a~VP~i  511 (758)
T 3k8x_A          448 VWHPNSAFKTAQAINDFNNGEQLP-MMILANW-RGFSGGQRDMF--------------NEVLKYGSFIVDALVDYKQPII  511 (758)
T ss_dssp             EECHHHHHHHHHHHHHHHHTSCCC-EEECCCC-CEECCSHHHHH--------------TTHHHHHHHHHHHHHTCCSCEE
T ss_pred             CCCHHHHHHHHHHHHHhhhccCCC-EEEEecC-CCCCCCHHHHH--------------ccHHHHHHHHHHHHHhCCCCEE
Confidence            588999999999999888733444 4554433 45766664332              2345677889999999999999


Q ss_pred             EEEC--CccchhHHHHHHh----cCE--EEEecCccceeccccccCCCCChhhH-HHHHHHhCCHHHHHHHHhcCcC---
Q 026137          105 AAVN--GHAAAAGFILALS----HDY--VVMRRDKGVLYMSEVDIGLTLPDYCA-ALFREKVGSATARRDVLLRAKK---  172 (243)
Q Consensus       105 a~v~--G~~~G~G~~lal~----~D~--~ia~~~~a~f~~p~~~~G~~~p~~g~-~~l~~~~g~~~~a~~l~l~g~~---  172 (243)
                      +.|-  |.+.||++ ++++    +|+  ++|.        |...+|+ +++-|+ ..+-+.-. .-..  |-.....   
T Consensus       512 tVI~RkGe~~GGA~-~am~~~~~ad~~~v~Aw--------p~A~isV-M~pEgaa~Il~r~~~-~~~~--m~r~d~~~~~  578 (758)
T 3k8x_A          512 IYIPPTGELRGGSW-VVVDPTINADQMEMYAD--------VNARAGV-LEPQGMVGIKFRREK-LLDT--MNRLDDKYRE  578 (758)
T ss_dssp             EEECTTCEEETHHH-HTTCGGGSTTTEEEEEE--------TTCEEES-SCHHHHHHHHSCHHH-HHHH--HHHHCSCCCC
T ss_pred             EEEecCCccchHHH-HHhCcccCCCHHHHhcC--------CCCEEEc-cCHHHHHHHHhcchH-HHHH--HHhcCHHHHH
Confidence            9998  99988777 5555    344  5554        4445566 444443 33322211 0111  1111111   


Q ss_pred             CC-------HHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCC
Q 026137          173 IK-------GEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRK  209 (243)
Q Consensus       173 ~~-------a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~  209 (243)
                      +.       ..+.....+-.++-..+++|...-.++|-+++..+
T Consensus       579 l~~~~~~~~~~~~~~~~~~~~~~~re~~l~p~y~qva~~fadlH  622 (758)
T 3k8x_A          579 LRSQLSNKSLAPEVHQQISKQLADRERELLPIYGQISLQFADLH  622 (758)
T ss_dssp             C----------------------------HHHHHHHHHHHHHTT
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            11       11112223444555554667777777777777665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	243
d1mj3a_	260	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat	1e-15
d1uiya_	253	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The	3e-08
d1dcia_	275	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	3e-07
d1pjha_	266	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	6e-06
d1q52a_	297	c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter	7e-06

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 72.1 bits (176), Expect = 1e-15
 Identities = 38/179 (21%), Positives = 66/179 (36%), Gaps = 16/179 (8%)

Query: 6   KHGDVFVLTLTGSSNVDEHR--LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNG 63
           K+  V ++ L    N  +    L    I+ +  A+   + +   G A + T   K F+ G
Sbjct: 13  KNSSVGLIQL----NRPKALNALCNGLIEELNQALETFEEDPAVG-AIVLTGGEKAFAAG 67

Query: 64  FDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHD 123
            D+   Q        R         F      +  +  P +AAVNG+A   G  LA+  D
Sbjct: 68  ADIKEMQN-------RTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCD 120

Query: 124 YVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMG 182
            +    +K      E+ +G              VG + A   ++L   +I  ++A + G
Sbjct: 121 IIYA-GEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAME-MVLTGDRISAQDAKQAG 177

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

 Score = 50.9 bits (120), Expect = 3e-08
 Identities = 53/179 (29%), Positives = 76/179 (42%), Gaps = 12/179 (6%)

Query: 6   KHGDVFVLTLTGSSNVDEHR--LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNG 63
           + G V V+ L    N  E R  L P    S+L A+   +A+     A + T  GK FS G
Sbjct: 5   EKGHVAVVFL----NDPERRNPLSPEMALSLLQALDDLEADPGVR-AVVLTGRGKAFSAG 59

Query: 64  FDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHD 123
            DLA+ +         E  +    S   L   +   P PTVAAVNG A A G  LAL+ D
Sbjct: 60  ADLAFLERVTEL--GAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACD 117

Query: 124 YVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMG 182
            VVM  +  + Y         +    + +    VG   A+  +L   + ++  EA  +G
Sbjct: 118 LVVMDEEARLGYTEVKIG--FVAALVSVILVRAVGEKAAKDLLLT-GRLVEAREAKALG 173

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.8 bits (112), Expect = 3e-07
 Identities = 32/187 (17%), Positives = 69/187 (36%), Gaps = 14/187 (7%)

Query: 3   TSEKHGDVFVLTLTGSSNVDEHR--LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFF 60
           +++KH  V  + L    N  E R  +  +    ++    +   ++   +  ++ +   F 
Sbjct: 9   SAQKH--VLHVQL----NRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFT 62

Query: 61  SNGFDLAWAQAAGSRTG-----ARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAG 115
           S    +  A       G         +  +   ++     +   P P +AA++G     G
Sbjct: 63  SGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGG 122

Query: 116 FILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKG 175
             L  + D     +D     + EVD+GL           + +G+ +   ++   A+K+  
Sbjct: 123 VDLISACDIRYCTQDAFF-QVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMA 181

Query: 176 EEALRMG 182
           +EAL  G
Sbjct: 182 DEALDSG 188

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.9 bits (102), Expect = 6e-06
 Identities = 34/212 (16%), Positives = 60/212 (28%), Gaps = 13/212 (6%)

Query: 5   EKHGDVFVLTLTGSSNVDEHR--LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSN 62
              G  F++ L       ++   L       +   +  A          I +S   F S 
Sbjct: 10  RIEGPFFIIHL----INPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSG 65

Query: 63  GFDLAWAQAAGSRTGARER-----VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFI 117
                 A+A G  T          V         +  A +      +  +NG A      
Sbjct: 66  ADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAA 125

Query: 118 LALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEE 177
           L    D V    DK  L     ++GL                     + L+  K  K + 
Sbjct: 126 LVALCDIVYSINDKVYLLYPFANLGLITEGGTTV-SLPLKFGTNTTYECLMFNKPFKYDI 184

Query: 178 ALRMGLVEAAYDSEERVAEA-SMRLGKQLAGR 208
               G +   ++     AEA + ++ ++L  +
Sbjct: 185 MCENGFISKNFNMPSSNAEAFNAKVLEELREK 216

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 44.0 bits (102), Expect = 7e-06
 Identities = 27/155 (17%), Positives = 50/155 (32%), Gaps = 18/155 (11%)

Query: 3   TSEKHGDVFVLTLTGSSNVDEHR--LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFF 60
           T  +H D   + +    N  E R    P  +D +   +  A+     G   +T  +G   
Sbjct: 21  TYHRHVDDATVRVA--FNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLT-GNGPSP 77

Query: 61  SNGFDL-------------AWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAV 107
            +G                 +  A+G      +           +   +  +P   +  V
Sbjct: 78  KDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLV 137

Query: 108 NGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIG 142
           NG AA  G  L +  D  +  R+      ++ D+G
Sbjct: 138 NGWAAGGGHSLHVVCDLTLASREYARFKQTDADVG 172

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	243
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	100.0
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	100.0
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	100.0
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	100.0
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	100.0
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	100.0
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	100.0
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	100.0
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	100.0
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	100.0
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	100.0
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	98.63
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	98.6
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	98.54
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	98.5
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	98.34
d1vrga1	251	Propionyl-CoA carboxylase complex B subunit, PccB	98.11
d2a7sa1	258	Propionyl-CoA carboxylase complex B subunit, PccB	98.04
d1xnya1	258	Propionyl-CoA carboxylase complex B subunit, PccB	98.02
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	97.95
d2f9yb1	263	Acetyl-coenzyme A carboxylase carboxyl transferase	97.8
d1on3a1	253	Methylmalonyl-CoA carboxyltransferase (transcarbox	97.79
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	97.49
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	97.38
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	97.27
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	97.2
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	97.17
d1uyra1	333	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	96.87
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	96.21
d1uyra2	404	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	94.83

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=100.00  E-value=8.5e-53  Score=346.43  Aligned_cols=221  Identities=20%  Similarity=0.289  Sum_probs=203.9

Q ss_pred             CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchH
Q 026137            1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGAR   79 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~   79 (243)
                      |+..+.+|+|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||+|.| ++||+|.|++++.....    .
T Consensus         1 ~~~~~~~d~I~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~i~-~vVl~~~g~~~F~aG~Dl~~~~~~~~----~   73 (230)
T d2a7ka1           1 MVFEENSDEVRVITLDHPN--KHNPFSRTLETSVKDALARANADDSVR-AVVVYGGAERSFSAGGDFNEVKQLSR----S   73 (230)
T ss_dssp             CEEEEEETTEEEEEECCSS--TTCBCCHHHHHHHHHHHHHHHHCTTCC-EEEEECCTTSCSBCBSCHHHHHTC-C----H
T ss_pred             CEEEEecCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHHhCCccc-ccceeccchhhhhhhccccccccccc----c
Confidence            4556778999999999998  999999999999999999999999999 89998876 89999999999986432    4


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCC
Q 026137           80 ERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGS  159 (243)
Q Consensus        80 ~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~  159 (243)
                      .....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|++++++++| 
T Consensus        74 ~~~~~~~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~G~-~p~~g~~~l~~~iG-  150 (230)
T d2a7ka1          74 EDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMAST-ANFVMPELKHGI-GCSVGAAILGFTHG-  150 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETT-CEEECCGGGGTC-CCHHHHHHHHHHHC-
T ss_pred             cccccchhhhhhhhhcccchhcceeeecccccccccccchhccchhhcccc-chhhhccccccc-cccccccccccccc-
Confidence            555677888999999999999999999999999999999999999999988 899999999999 79999889999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHhhhH
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGLDI  234 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~~~~  234 (243)
                      ..++++++++|++++|+||+++||||+|+++ +++.+++.++++++++.|  +.+++.+|+.+++.+.+.++..+
T Consensus       151 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~ia~~~--~~a~~~~K~~l~~~~~~~l~~~~  222 (230)
T d2a7ka1         151 FSTMQEIIYQCQSLDAPRCVDYRLVNQVVES-SALLDAAITQAHVMASYP--ASAFINTKRAVNKPFIHLLEQTR  222 (230)
T ss_dssp             HHHHHHHHHHCCCBCHHHHHHHTCCSEEECH-HHHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccchHHHHHHhhhcccCCCh-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHhccHHHHH
Confidence            9999999999999999999999999999997 899999999999999998  99999999999998888777433

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-51  Score=337.99  Aligned_cols=220  Identities=18%  Similarity=0.238  Sum_probs=195.4

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|+. . +||++|.|++||+|+|++++..... ......
T Consensus         5 i~~~~~~gi~~Itlnrp~--~~Nals~~~~~~l~~~l~~~~~d~~-v-~vvl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~   79 (245)
T d2f6qa1           5 LVVTSEDGITKIMFNRPK--KKNAINTEMYHEIMRALKAASKDDS-I-ITVLTGNGDYYSSGNDLTNFTDIPP-GGVEEK   79 (245)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHSSC-S-EEEEEESTTCSBCCBCC----CCCT-THHHHH
T ss_pred             EEEEEECCEEEEEEcCCC--cCCCCCHHHHHHHHHHHHHHhcCCc-e-EEeecCCCccccCCccchhhhcccc-cccccc
Confidence            678999999999999998  8999999999999999999999876 4 7999999999999999999876433 222444


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~  160 (243)
                      .......+++++.++.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus        80 ~~~~~~~~~~~~~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~~g-~  156 (245)
T d2f6qa1          80 AKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDR-ATFHTPFSHLGQ-SPEGCSSYTFPKIMS-P  156 (245)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETT-CEEECCTGGGTC-CCCTTHHHHHHHHHC-H
T ss_pred             cchhhhHHHHHHhhhhhcCCceEEEECCccccccccchhhhhhhhhhcc-CeEecccccCCC-Cccccchhhcccccc-c
Confidence            5566677889999999999999999999999999999999999999987 999999999999 56665 679999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHhh
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGL  232 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~~  232 (243)
                      .++++++++|++++|+||+++||||+|+|+ +++.+++.++|+++++.|  +.+++.+|+.+++...+.++.
T Consensus       157 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~~  225 (245)
T d2f6qa1         157 AKATEMLIFGKKLTAGEACAQGLVTEVFPD-STFQKEVWTRLKAFAKLP--PNALRISKEVIRKREREKLHA  225 (245)
T ss_dssp             HHHHHHHTTCCCEEHHHHHHTTSCSEEECT-TTHHHHHHHHHHHHTTSC--HHHHHHHHHHHHGGGHHHHHH
T ss_pred             chhhhhcccccccccccccccccccccCCc-chHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhhhcCHHH
Confidence            999999999999999999999999999998 889999999999999998  999999999998877776653

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=100.00  E-value=1.6e-50  Score=340.30  Aligned_cols=223  Identities=18%  Similarity=0.267  Sum_probs=197.0

Q ss_pred             CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      .|.++.+|||++||||||+  +.|++|.+|+.+|.++++.+++|++++ +||+||.|+.||+|+|++++...........
T Consensus         4 ~i~~~i~dgVa~Itlnrp~--~~Nal~~~~~~el~~~l~~~~~d~~i~-~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~   80 (269)
T d1nzya_           4 AIGHRVEDGVAEITIKLPR--HRNALSVKAMQEVTDALNRAEEDDSVG-AVMITGAEDAFCAGFYLREIPLDKGVAGVRD   80 (269)
T ss_dssp             SEEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCSBCCBCGGGSCSSSHHHHHHH
T ss_pred             ceEEEEECCEEEEEEcCCC--cCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEeCCcccccchhhHHHHhhcccccchhh
Confidence            3788999999999999998  899999999999999999999999999 9999999999999999998754211011123


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCH
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSA  160 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~  160 (243)
                      ....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++|+.++|+.++++++.++++++| .
T Consensus        81 ~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~-a~~~~~~~~~g~~~~~g~~~~l~~~ig-~  158 (269)
T d1nzya_          81 HFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADS-AKFVCAWHTIGIGNDTATSYSLARIVG-M  158 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCHHHHTCCCCTTHHHHHHHHHH-H
T ss_pred             HHHHHHHHHHHHHHHHHhhcchhehhhhhhcCCCceeeeecccHhhhhhh-hhhcccccccccccccccccccccccC-h
Confidence            33445556788999999999999999999999999999999999999987 899999999999434444679999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~  231 (243)
                      .++++++++|+.++|+||+++||||+||++ +++.+++.++|+++++.|  +.+++.+|+.+++.....++
T Consensus       159 ~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~  226 (269)
T d1nzya_         159 RRAMELMLTNRTLYPEEAKDWGLVSRVYPK-DEFREVAWKVARELAAAP--THLQVMAKERFHAGWMQPVE  226 (269)
T ss_dssp             HHHHHHHHHCCCBCHHHHHHHTSCSCEECH-HHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHTTSCHH
T ss_pred             hhhhhccccccccchhHHHHcCCccccccc-cccccchhhhhhhhhhhh--HHHHHHHHHHHHHHHcCCHH
Confidence            999999999999999999999999999997 899999999999999998  99999999999877654444

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=5.9e-50  Score=333.73  Aligned_cols=219  Identities=31%  Similarity=0.374  Sum_probs=198.1

Q ss_pred             CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      ||.+++ ++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|+.||+|+|++.+..... .. ..
T Consensus         1 ~v~ie~-G~va~Itlnrp~--~~Nal~~~~~~el~~~l~~~~~d~~v~-~vvl~g~g~~f~aG~dl~~~~~~~~-~~-~~   74 (253)
T d1uiya_           1 MVQVEK-GHVAVVFLNDPE--RRNPLSPEMALSLLQALDDLEADPGVR-AVVLTGRGKAFSAGADLAFLERVTE-LG-AE   74 (253)
T ss_dssp             CEEEEC-SSEEEEEECCGG--GTCCCCHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSCSBCCCCHHHHHHHTT-SC-HH
T ss_pred             CEEEee-CCEEEEEEcCCC--cCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEecccccccccchhHHhhhccc-cC-cc
Confidence            466664 679999999997  899999999999999999999999999 9999999999999999998876433 22 44


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCH
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSA  160 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~  160 (243)
                      ....+...++.++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||.++|+ +|++++.++++++| .
T Consensus        75 ~~~~~~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~-a~~~~~e~~~g~-~~~~~~~~l~~~~g-~  151 (253)
T d1uiya_          75 ENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEE-ARLGYTEVKIGF-VAALVSVILVRAVG-E  151 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETT-CEEECCHHHHTC-CCHHHHHHHHHHSC-H
T ss_pred             cccchhhhhhhhhhHHhcCCCCEEEEeCeEEehhhHHHHhhhhhhhhhhh-hHHhhhhccccc-ccccchhhhhcccC-H
Confidence            55566777889999999999999999999999999999999999999987 899999999999 68888889999999 9


Q ss_pred             HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137          161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~  231 (243)
                      .++++++++|++++++||+++||||+|+++ +++.+++.++++++++.+  +.++..+|+.+++.....++
T Consensus       152 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-~~~~~~a~~~a~~~~~~~--~~a~~~~K~~l~~~~~~~l~  219 (253)
T d1uiya_         152 KAAKDLLLTGRLVEAREAKALGLVNRIAPP-GKALEEAKALAEEVAKNA--PTSLRLTKELLLALPGMGLE  219 (253)
T ss_dssp             HHHHHHHHHCCEEEHHHHHHHTSCSEEECT-TCHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHGGGSCHH
T ss_pred             HHHHHHhhcCcCCCHHHHHHhCCCcccccc-cccchhHHHHHHhhcccc--hHHHHHHHHHHHHhhcCCHH
Confidence            999999999999999999999999999998 889999999999999998  89999999999876554443

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-50  Score=333.60  Aligned_cols=219  Identities=20%  Similarity=0.287  Sum_probs=196.8

Q ss_pred             ceeeeeCCEEEEEEc-CCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEKHGDVFVLTLT-GSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln-~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++|++| ||+  +.|++|.+|+.+|.+++++++.| +++ +||+||.|+.||+|+|++++..... .....
T Consensus         4 i~v~~~~gi~~i~l~~rp~--~~Nals~~~~~el~~al~~~~~d-~~~-~vvl~g~g~~FsaG~Dl~~~~~~~~-~~~~~   78 (258)
T d2fw2a1           4 IVVKKEDGFTQIVLSTRST--EKNALNTEVIKEMVNALNSAAAD-DSK-LVLFSAAGSVFCCGLDFGYFVRHLR-NDRNT   78 (258)
T ss_dssp             EEEEEETTEEEEEECCSSS--STTCBCHHHHHHHHHHHHHHHHS-SCS-EEEEEECSSCSBCCBCHHHHHHHHH-HCHHH
T ss_pred             EEEEEECCEEEEEECCCCc--ccCCCCHHHHHHHHHHHHHHHcC-CCE-EEEEecCccccccccccchhhhccc-ccccc
Confidence            678999999999997 697  89999999999999999999987 568 8999999999999999999865322 11133


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                      ....+.+.+++++..+.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        79 ~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~ig-  155 (258)
T d2fw2a1          79 ASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEK-AWFQTPYTTFGQ-SPDGCSSITFPKMMG-  155 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETT-CEEECCHHHHTC-CCCTTHHHHHHHHHC-
T ss_pred             hhhHHHHHHHHHHHhhhccceeeeeecccccccccccccccccccceecc-cceeeccccccc-cccccccccchhhcC-
Confidence            34567788999999999999999999999999999999999999999987 899999999999 56665 678999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~  231 (243)
                      ..++++++++|++++|+||+++||||+||++ +++.+++.++++++++.|  +.+++.+|+.+++.....++
T Consensus       156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~i~~~~--~~a~~~~K~~~~~~~~~~l~  224 (258)
T d2fw2a1         156 KASANEMLIAGRKLTAREACAKGLVSQVFLT-GTFTQEVMIQIKELASYN--AIVLEECKALVRCNIKLELE  224 (258)
T ss_dssp             HHHHHHHHTTCCEEEHHHHHHTTSCSEEECS-TTHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhccCcccccccccccccccccccc-cccccccchhhhhhhhhh--HHHHHHHHHHHHHhhcCCHH
Confidence            9999999999999999999999999999998 889999999999999998  89999999999887666555

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=1e-49  Score=331.60  Aligned_cols=217  Identities=18%  Similarity=0.243  Sum_probs=195.4

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.++.++||++||||||   +.|++|.+|+.+|.++++.++.|++++ +||++|.| ++||+|+|++++...     ...
T Consensus         6 ve~~~~~gIa~itln~p---~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vvl~g~g~~~Fs~G~Dl~~~~~~-----~~~   76 (249)
T d1sg4a1           6 VEPDAGAGVAVMKFKNP---PVNSLSLEFLTELVISLEKLENDKSFR-GVILTSDRPGVFSAGLDLTEMCGR-----SPA   76 (249)
T ss_dssp             EEEETTTTEEEEEECCT---TTTEECHHHHHHHHHHHHHHHHCTTCC-EEEEEESSTEESCCEECGGGGSSC-----CHH
T ss_pred             EEEECCCCEEEEEECCC---CcCCCCHHHHHHHHHHHHHHHhCCCcc-EEEEEeccceeEeccccccccccc-----ccc
Confidence            45566789999999999   679999999999999999999999999 99999987 579999999988642     145


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccce--eccccccCCCCChhhHHHHHHHhC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVL--YMSEVDIGLTLPDYCAALFREKVG  158 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f--~~p~~~~G~~~p~~g~~~l~~~~g  158 (243)
                      ....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|  ++||+++|+.+|.++++++++++|
T Consensus        77 ~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG  155 (249)
T d1sg4a1          77 HYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADN-PRYCIGLNETQLGIIAPFWLKDTLENTIG  155 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECC-TTCCBSCCGGGGTCCCCHHHHHHHHHHHC
T ss_pred             cccccchhhHHHHHhhhcCccccchhhcccccccccccccccccceeecc-ccccccccccccccccccccccccccccc
Confidence            56677888999999999999999999999999999999999999999988 655  789999999434445689999999


Q ss_pred             CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHhh
Q 026137          159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGL  232 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~~  232 (243)
                       ..++++++++|++++|++|+++||||+++|+ +++.+++.++++++++.|  +.+++.+|+.+++...+.+..
T Consensus       156 -~~~a~~lll~g~~~~a~~A~~~Glv~~v~~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~~~~~~~~~l~~  225 (249)
T d1sg4a1         156 -HRAAERALQLGLLFPPAEALQVGIVDQVVPE-EQVQSTALSAIAQWMAIP--DHARQLTKAMMRKATASRLVT  225 (249)
T ss_dssp             -HHHHHHHHHHTCCBCHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHHT
T ss_pred             -cccccccccccccccHHHHHhhccccccCCh-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCHHH
Confidence             9999999999999999999999999999997 889999999999999998  999999999999877776664

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.5e-50  Score=338.59  Aligned_cols=214  Identities=21%  Similarity=0.284  Sum_probs=190.9

Q ss_pred             Cceeeee---CCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcc
Q 026137            1 MCTSEKH---GDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTG   77 (243)
Q Consensus         1 ~i~~~~~---~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~   77 (243)
                      +|.++++   ++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +||+||.|++||+|+|++++...   . 
T Consensus         5 ~i~~e~~g~~~~I~~itlnrP~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vvl~g~g~~F~aG~Dl~~~~~~---~-   77 (260)
T d1mj3a_           5 YIITEKKGKNSSVGLIQLNRPK--ALNALCNGLIEELNQALETFEEDPAVG-AIVLTGGEKAFAAGADIKEMQNR---T-   77 (260)
T ss_dssp             SEEEEEESGGGCEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEECCSSEEECCBCHHHHTTC---C-
T ss_pred             EEEEEEEcCCCCEEEEEEcCCC--cCCCCCHHHHHHHHHHHHHHHhCCCcc-eEEEecccccccccchhhhhhcc---c-
Confidence            3677775   589999999997  899999999999999999999999999 99999999999999999998652   1 


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHH
Q 026137           78 ARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREK  156 (243)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~  156 (243)
                         ....+...+.+++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++++++
T Consensus        78 ---~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl-~p~~~~~~~l~~~  152 (260)
T d1mj3a_          78 ---FQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEK-AQFGQPEILLGT-IPGAGGTQRLTRA  152 (260)
T ss_dssp             ---HHHHHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECGGGGGTC-CCCSSTTTHHHHH
T ss_pred             ---hhhhhHHHHHHHHHHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCC-CEEECchhccCc-CCcccHHHHHHHH
Confidence               11234456777888999999999999999999999999999999999987 899999999999 56665 6799999


Q ss_pred             hCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHH
Q 026137          157 VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVL  230 (243)
Q Consensus       157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l  230 (243)
                      +| ..++++++++|++++|+||+++|||++++++ +++.+.+.++++++++.+  +.++..+|+.+++.....+
T Consensus       153 ig-~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-~~~~~~a~~~a~~i~~~~--~~a~~~~K~~l~~~~~~~l  222 (260)
T d1mj3a_         153 VG-KSLAMEMVLTGDRISAQDAKQAGLVSKIFPV-ETLVEEAIQCAEKIANNS--KIIVAMAKESVNAAFEMTL  222 (260)
T ss_dssp             HC-HHHHHHHHHHCCCEEHHHHHHHTSCSEEECT-TTHHHHHHHHHHHHHHSC--HHHHHHHHHHHHGGGSSCH
T ss_pred             hC-HHHHHHHHHcCcccCchhhccCCCceeeecc-cccccccccccccccchh--hHHHHHHHHHHHHHHhCCH
Confidence            99 9999999999999999999999999999998 889999999999999998  9999999999987654433

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=9.6e-50  Score=334.38  Aligned_cols=213  Identities=24%  Similarity=0.300  Sum_probs=193.2

Q ss_pred             ceeee-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            2 CTSEK-HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         2 i~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      |.++. ++||++|+| ||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|++||+|+|++++.....   ..+
T Consensus        11 i~~~~~~~gV~~itl-rp~--~~Nal~~~m~~el~~~~~~~~~d~~vr-~vvl~g~g~~FsaG~Dl~~~~~~~~---~~~   83 (263)
T d1wz8a1          11 LAFAWPRPGVLEITF-RGE--KLNAMPPALHRGLARVWRDLEAVEGVR-AVLLRGEGGVFSAGGSFGLIEEMRA---SHE   83 (263)
T ss_dssp             EEEEEEETTEEEEEE-CCS--GGGCBCHHHHHHHHHHHHHHTTCTTCS-EEEEEEGGGCCBCCBCHHHHHHHHH---CHH
T ss_pred             EEEEEcCCCEEEEEE-CCC--CCCCCCHHHHHHHHHHHHHHhhCCCCe-EEEEecccccccccchhhhhhhhcc---ccc
Confidence            45665 678999999 687  999999999999999999999999999 9999999999999999999876311   134


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                      ....+....++++..+.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        84 ~~~~~~~~~~~~~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl-~p~~~~~~~l~~~~G-  160 (263)
T d1wz8a1          84 ALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKG-TRLLDGHLRLGV-AAGDHAVLLWPLLVG-  160 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCHHHHTS-CCTTTHHHHTHHHHC-
T ss_pred             ccccchhhhhHHHHHhhhhhcceeeecccccccccccccccccccccccc-cccccccccccc-ccccccccccccccc-
Confidence            45567778899999999999999999999999999999999999999987 899999999999 56665 578999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      ..++++++++|++++|+||+++||||+|||+ +++.+++.++|+++++.|  +.+++.+|+.+++...
T Consensus       161 ~~~a~~l~l~g~~i~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~al~~~K~~l~~~~~  225 (263)
T d1wz8a1         161 MAKAKYHLLLNEPLTGEEAERLGLVALAVED-EKVYEKALEVAERLAQGP--KEALHHTKHALNHWYR  225 (263)
T ss_dssp             HHHHHHHHHHTCCEEHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHH
T ss_pred             cchhhhhcccccccchhHHHhcCCcccccch-hhhhHHHHHHHHHhhccH--HHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998 889999999999999998  9999999999876543

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.7e-49  Score=329.78  Aligned_cols=225  Identities=16%  Similarity=0.163  Sum_probs=190.4

Q ss_pred             CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCc----
Q 026137            1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRT----   76 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~----   76 (243)
                      .|.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||+|.|++||+|+|++++.......    
T Consensus         6 ~i~~~~~~~v~~Itlnrp~--~~Na~~~~~~~el~~al~~~~~d~~v~-~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~   82 (266)
T d1pjha_           6 KISYRIEGPFFIIHLINPD--NLNALEGEDYIYLGELLELADRNRDVY-FTIIQSSGRFFSSGADFKGIAKAQGDDTNKY   82 (266)
T ss_dssp             TEEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEECBTTBSBCCBCHHHHHC-------CC
T ss_pred             eEEEEEECCEEEEEEcCCC--cCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEeccccccccchhHHHHHhccccccccc
Confidence            3789999999999999998  899999999999999999999999999 999999999999999999987542100    


Q ss_pred             --chHHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHH
Q 026137           77 --GARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALF  153 (243)
Q Consensus        77 --~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l  153 (243)
                        ........+...++.++..+.++||||||+|||+|+|||++|+++||+|||++++++|++||+++|+ +|++| ++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl-~p~~g~~~~l  161 (266)
T d1pjha_          83 PSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGL-ITEGGTTVSL  161 (266)
T ss_dssp             SSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTC-CCCTTHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHhcchhhhhhhhcccccccccchhccchhhhhhcccccccccccccc-cccccccccc
Confidence              1123345567778889999999999999999999999999999999999998776889999999999 67665 6799


Q ss_pred             HHHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhH-HHH----HHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137          154 REKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEER-VAE----ASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       154 ~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~-l~~----~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      ++++| ..++++++++|++++|+||+++|||++|+++++. .+.    .+.++++.+...+  +.++..+|+.++....+
T Consensus       162 ~r~~g-~~~a~~llltg~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~s~~~~K~~l~~~~~~  238 (266)
T d1pjha_         162 PLKFG-TNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLY--LPSCLGMKKLLKSNHID  238 (266)
T ss_dssp             HHHHC-HHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHTTTHH
T ss_pred             ccccc-cchhhhhhccCCcCCHHHHHHCCCEeEeeCchhhhHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhhHH
Confidence            99999 9999999999999999999999999999976321 121    2345566666666  78889999999887777


Q ss_pred             HHhh
Q 026137          229 VLGL  232 (243)
Q Consensus       229 ~l~~  232 (243)
                      .++.
T Consensus       239 ~~~~  242 (266)
T d1pjha_         239 AFNK  242 (266)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6664

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=1.9e-48  Score=323.91  Aligned_cols=218  Identities=18%  Similarity=0.252  Sum_probs=198.3

Q ss_pred             ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137            2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~   81 (243)
                      |+++++++|++||||+|+  +.|++|.+|+.+|.+++++++.|++++ +|||||.|+.||+|.|++++...     ....
T Consensus        15 i~~~~~~~v~~itln~p~--~~Nal~~~~~~el~~al~~~~~d~~v~-~vvl~g~g~~FsaG~Dl~~~~~~-----~~~~   86 (249)
T d1szoa_          15 IRLERDGGVLLVTVHTEG--KSLVWTSTAHDELAYCFHDIACDRENK-VVILTGTGPSFCNEIDFTSFNLG-----TPHD   86 (249)
T ss_dssp             EEEEEETTEEEEEECBTT--BSCEECHHHHHHHHHHHHHHHHCTTCC-EEEEECBTTBSBCEECGGGSCCS-----SHHH
T ss_pred             EEEEEECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHHhCCCcc-eEeeecccccccccchhhhhhcc-----cccc
Confidence            788999999999999997  889999999999999999999999999 99999999999999999987542     1455


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccce-eccccccCCCCChhh-HHHHHHHhCC
Q 026137           82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVL-YMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f-~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                      ...+...+++++.++.++|||||+++||.|.| |++++++||+||++++ ++| .+||.++|+ +|++| ++++++++| 
T Consensus        87 ~~~~~~~~~~l~~~i~~~~~pvIa~v~g~~~G-G~~l~l~~D~ria~~~-a~f~~~pe~~~g~-~p~~g~~~~l~r~ig-  162 (249)
T d1szoa_          87 WDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTN-APEIPVMSDIVLAAES-ATFQDGPHFPSGI-VPGDGAHVVWPHVLG-  162 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSCEEEEECSCBCS-STHHHHTSSEEEEETT-CEEECTTSGGGTC-CCTTTHHHHHHHHHC-
T ss_pred             hhhhhhhhhhhhhhcccCcccceeeecccccc-ccccccccccccccCC-cEEEEeecccccc-ccccccccccccccC-
Confidence            66777888999999999999999999998865 6789999999999988 667 479999999 67776 579999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHhhhH
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGLDI  234 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~~~~  234 (243)
                      ..++++++++|++++++||+++||||+|+|+ +++.+++.++++++++.|  +.+++.+|+.+++...+.++...
T Consensus       163 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~~e~~l  234 (249)
T d1szoa_         163 SNRGRYFLLTGQELDARTALDYGAVNEVLSE-QELLPRAWELARGIAEKP--LLARRYARKVLTRQLRRVMEADL  234 (249)
T ss_dssp             HHHHHHHHHTTCEEEHHHHHHHTSCSEEECH-HHHHHHHHHHHHHHHTSC--HHHHHHHHHHHSHHHHHHHHHHH
T ss_pred             ccceeeecccCCCCCHHHHHHhCCcCcccCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHhccHHHHH
Confidence            9999999999999999999999999999997 899999999999999998  99999999999998877776543

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.8e-48  Score=326.55  Aligned_cols=220  Identities=16%  Similarity=0.271  Sum_probs=191.0

Q ss_pred             eeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcc------h
Q 026137            5 EKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTG------A   78 (243)
Q Consensus         5 ~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~------~   78 (243)
                      +.+++|++||||||+  +.|++|.+|+.+|.++++.+++|++++ +|||||.|+.||+|+|+.++......+.      .
T Consensus         9 ~~~~~I~~itlnrP~--~~Nals~~m~~el~~~l~~~~~d~~v~-~vvltg~~~~F~aG~dl~~~~~~~~~~~~~~~~~~   85 (275)
T d1dcia_           9 SAQKHVLHVQLNRPE--KRNAMNRAFWRELVECFQKISKDSDCR-AVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARI   85 (275)
T ss_dssp             EEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHTCTTCC-EEEEEESTTCSBCCBCHHHHHHHHTSCCCSSHHHH
T ss_pred             EccCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEeccccccccCccHHHhhhcccccccccccch
Confidence            348899999999998  899999999999999999999999999 9999999999999999998865322110      0


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHh
Q 026137           79 RERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKV  157 (243)
Q Consensus        79 ~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~  157 (243)
                      ......+...+++++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++
T Consensus        86 ~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~-a~f~~pe~~~Gl-~p~~~~~~~~~~~~  163 (275)
T d1dcia_          86 AWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQD-AFFQVKEVDVGL-AADVGTLQRLPKVI  163 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETT-CEEECCGGGGTS-CCCSSHHHHGGGTC
T ss_pred             hhhhccchhhhHHHHHHHHhcCCCEEEEEeeEeehhhHHHHhhcCchhhccC-ccccchhccccc-cccccccccccccc
Confidence            1234456667888999999999999999999999999999999999999988 899999999999 56665 56888888


Q ss_pred             CCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137          158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~  231 (243)
                      |....+++++++|++++++||+++||||+|+++++.+.+++.++++++++.+  +.+++.+|+.+++.....++
T Consensus       164 g~~~~~~~ll~~g~~~~a~eA~~~Glv~~v~~~~~~l~~~~~~~a~~i~~~~--p~a~~~~K~~l~~~~~~~l~  235 (275)
T d1dcia_         164 GNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKS--PVAVQGSKINLIYSRDHSVD  235 (275)
T ss_dssp             SCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHSCHH
T ss_pred             ccccccccccccccccchhhhccCCCceeeeehhhhhhhccccccccccccc--HHHHHHHHHHHHHHhcCCHH
Confidence            8556667899999999999999999999999985667889999999999998  99999999999776554443

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.2e-49  Score=329.12  Aligned_cols=210  Identities=16%  Similarity=0.283  Sum_probs=185.5

Q ss_pred             CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecC--CCccccCCChhhHHHcCCCcch
Q 026137            1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSH--GKFFSNGFDLAWAQAAGSRTGA   78 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~--g~~F~~G~D~~~~~~~~~~~~~   78 (243)
                      +|.++++++|++||||||+  +.|++|.+|+.+|.+++++++ +++++ +|||+|.  |++||+|+|++++..... +  
T Consensus         5 ~i~~~~~~~v~~Itlnrp~--~~Nal~~~~~~~l~~al~~~~-~~~~~-~vVl~g~~g~~~F~aG~Dl~~~~~~~~-~--   77 (261)
T d1ef8a_           5 YVNVVTINKVAVIEFNYGR--KLNALSKVFIDDLMQALSDLN-RPEIR-CIILRAPSGSKVFSAGHDIHELPSGGR-D--   77 (261)
T ss_dssp             SEEEEEETTEEEEEECCGG--GTTCCCHHHHHHHHHHHHHTC-STTCC-EEEEECCTTCSEEECCSCSTTC------C--
T ss_pred             EEEEEEECCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHh-CCCCE-EEEEeccccchhhcccccccccccCCc-c--
Confidence            4789999999999999998  899999999999999999997 45789 8999886  589999999998865321 1  


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHh
Q 026137           79 RERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKV  157 (243)
Q Consensus        79 ~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~  157 (243)
                         ...+.+.+++++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||.++|+ +|++| +.++++.+
T Consensus        78 ---~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~-a~~~~pe~~~Gl-~~~~~~~~~l~r~~  152 (261)
T d1ef8a_          78 ---PLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAAST-STFSMTPVNLGV-PYNLVGIHNLTRDA  152 (261)
T ss_dssp             ---TTCTTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCHHHHTC-CCCHHHHHTTSSSS
T ss_pred             ---ccccccchhhhHHHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHh-HHHhhhhccccc-cccccccccccccc
Confidence               1123455778999999999999999999999999999999999999987 899999999999 56664 57899999


Q ss_pred             CCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137          158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL  226 (243)
Q Consensus       158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~  226 (243)
                      | ..++++++++|+.++|+||+++||||+++++ +++.+++.++++++++.+  +.++..+|+.++...
T Consensus       153 g-~~~a~~~~l~g~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~  217 (261)
T d1ef8a_         153 G-FHIVKELIFTASPITAQRALAVGILNHVVEV-EELEDFTLQMAHHISEKA--PLAIAVIKEELRVLG  217 (261)
T ss_dssp             C-HHHHHHHHHHCCCEEHHHHHHTTSCSEEECH-HHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHH
T ss_pred             C-ccccccccccCceEcHHHHHHcCCcceeeec-hhhhhhhHHHHHHHHhcC--cHHHHHHHHHHHHHH
Confidence            9 9999999999999999999999999999998 889999999999999998  999999999887543

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-47  Score=322.51  Aligned_cols=212  Identities=18%  Similarity=0.314  Sum_probs=188.6

Q ss_pred             eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHHHHHHH
Q 026137            7 HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARERVHYM   85 (243)
Q Consensus         7 ~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~~~~~~   85 (243)
                      ++||++||||||+  +.|++|.+|+.+|.++++.++.|++++ +|||||.| ++||+|.|++.+....     ......+
T Consensus        13 ~~gI~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~~f~~g~d~~~~~~~~-----~~~~~~~   84 (266)
T d1hzda_          13 NRGIVVLGINRAY--GKNSLSKNLIKMLSKAVDALKSDKKVR-TIIIRSEVPGIFCAGADLKERAKMS-----SSEVGPF   84 (266)
T ss_dssp             GTTEEEEEECCGG--GTTCBCTTHHHHHHHHHHHHHHCSSCS-EEEEEESBTEEEECCBCHHHHTTSC-----HHHHHHH
T ss_pred             cCCEEEEEeCCCC--CCCCCCHHHHHHHHHHHHHHHhCCCcc-eEEEecccccccccccccccccccc-----chhhhhh
Confidence            4689999999997  889999999999999999999999999 99999987 6899999999987531     3445567


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCHHHHH
Q 026137           86 FKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSATARR  164 (243)
Q Consensus        86 ~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~~~a~  164 (243)
                      .+.+++++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| ..+++
T Consensus        85 ~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~ig-~~~a~  161 (266)
T d1hzda_          85 VSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASS-AKMGLVETKLAI-IPGGGGTQRLPRAIG-MSLAK  161 (266)
T ss_dssp             HHHHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETT-CEEECCGGGGTC-CCCSSHHHHHHHHHC-HHHHH
T ss_pred             hhHHHHHHHHHhcCCcccccccccccccccceeccccceeeecCC-cEEeecccceee-cCCccceeeehhhhH-HHHHH
Confidence            788999999999999999999999999999999999999999988 899999999999 57665 678999999 99999


Q ss_pred             HHHhcCcCCCHHHHHHcCchhhhcCCh---hHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137          165 DVLLRAKKIKGEEALRMGLVEAAYDSE---ERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       165 ~l~l~g~~~~a~eA~~~Glv~~vv~~~---~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~  231 (243)
                      +++++|++++|+||+++||||+|||++   +++.+.+.++++++++.|  +.+++.+|+.+++.....++
T Consensus       162 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~a~~~a~~i~~~~--p~a~~~~K~~l~~~~~~~~~  229 (266)
T d1hzda_         162 ELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQG--PVAMRVAKLAINQGMEVDLV  229 (266)
T ss_dssp             HHHHHTCEEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTTSC--HHHHHHHHHHHHHHHTSCHH
T ss_pred             hhhccCCccCHHHhhcccccccccChhhhhhHHHHHHHHHHHhcccCC--hHHHHHHHHHHHHHhcCCHH
Confidence            999999999999999999999999983   235667777778888888  99999999999876554333

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=8.6e-47  Score=323.09  Aligned_cols=198  Identities=20%  Similarity=0.304  Sum_probs=178.4

Q ss_pred             eeee-eCCEEEEEEc-CCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137            3 TSEK-HGDVFVLTLT-GSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE   80 (243)
Q Consensus         3 ~~~~-~~~v~~i~ln-~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~   80 (243)
                      ++++ ++||++|+|| +|+  +.|++|.+|+.+|.++++.++.|++++ +|||+|.|+.||+|+|++++..... .. ..
T Consensus         9 ~~~~~~~gva~i~ln~~p~--~~Nal~~~~~~el~~al~~~~~d~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~-~~   83 (310)
T d1wdka4           9 TVTALESGIVELKFDLKGE--SVNKFNRLTLNELRQAVDAIKADASVK-GVIVSSGKDVFIVGADITEFVENFK-LP-DA   83 (310)
T ss_dssp             EEEECGGGEEEEEECCTTS--SSCBCCHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSSSBBCCCHHHHHHHTT-SC-HH
T ss_pred             EEEEecCCEEEEEECCCCc--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCccchhhhhhhhhccc-cc-ch
Confidence            4444 7899999998 787  899999999999999999999999999 9999999999999999999876433 22 22


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137           81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~  159 (243)
                      ........+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        84 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~-a~f~~pe~~~Gl-~P~~gg~~~L~r~iG-  160 (310)
T d1wdka4          84 ELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADS-AKIGLPEVKLGI-YPGFGGTVRLPRLIG-  160 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETT-CEEECGGGGGTC-CCCSSHHHHHHHHHC-
T ss_pred             hhhhhhhHHHHHHHHhhcCCccceeeccccccccccccchhhhhhhcccc-ceecccccccCC-Cccccchhhhhhhhh-
Confidence            33344456889999999999999999999999999999999999999987 899999999999 67665 579999999 


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCC
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRK  209 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~  209 (243)
                      ..++++++++|++++++||+++||||+|+|+ +++.+.+.+++++++..+
T Consensus       161 ~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~~~~~~  209 (310)
T d1wdka4         161 VDNAVEWIASGKENRAEDALKVSAVDAVVTA-DKLGAAALDLIKRAISGE  209 (310)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHTTSSSEEECG-GGHHHHHHHHHHHHHTTS
T ss_pred             hhhhhhhhccccccCHHHHhhccCccEEccH-HHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999998 899999999999999876

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.9e-46  Score=318.30  Aligned_cols=215  Identities=15%  Similarity=0.244  Sum_probs=177.2

Q ss_pred             ceeee--eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecC-------CCccccCCChhhHHHc
Q 026137            2 CTSEK--HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSH-------GKFFSNGFDLAWAQAA   72 (243)
Q Consensus         2 i~~~~--~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~-------g~~F~~G~D~~~~~~~   72 (243)
                      |++++  ++||++||||||+  +.|++|.+|+.+|.+++++++.|++++ +|||||.       |+.||+|.|+......
T Consensus        20 i~~~~~~~~gi~~ItlnRP~--~~NAl~~~m~~eL~~~l~~~~~d~~vr-~vVltg~~~~f~~gG~~f~ag~Dl~~~~~~   96 (297)
T d1q52a_          20 ITYHRHVDDATVRVAFNRPE--VRNAFRPHTVDELYRVLDHARMSPDVG-VVLLTGNGPSPKDGGWAFCSGGDQRIRGRS   96 (297)
T ss_dssp             EEEEEESSSSEEEEEECCGG--GTTCCCHHHHHHHHHHHHHHHHCTTCC-EEEEEECCCCTTTCCCEEECCC--------
T ss_pred             eEEEEEccCCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHHHhCCCcc-EEEEecCCCcccchhhhhhhcchhhhhccc
Confidence            45654  6899999999998  899999999999999999999999999 9999997       4577888888765432


Q ss_pred             CCCc------chHHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCC
Q 026137           73 GSRT------GARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLP  146 (243)
Q Consensus        73 ~~~~------~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p  146 (243)
                      ....      ............+.+++..|.++||||||+|||+|+|||++++++||+||+++++++|++||+++|+ +|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~Gl-~p  175 (297)
T d1q52a_          97 GYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGS-FD  175 (297)
T ss_dssp             ---------------------CHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGTC-CC
T ss_pred             ccccccccccchhhhHHHHHHHHHHHHHHHHhcCCeEEEEEcceeeeccchhhhhhhccccccccccceeeeecccc-cc
Confidence            1100      0012223344557789999999999999999999999999999999999998875679999999999 56


Q ss_pred             hh-hHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhch
Q 026137          147 DY-CAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYP  224 (243)
Q Consensus       147 ~~-g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~  224 (243)
                      ++ |+.++++++| ..++++++++|++++|+||+++||||+|+++ +++++++.++++++++.|  +.+++.+|+.++.
T Consensus       176 ~~~~~~~L~r~iG-~~~a~~llltg~~~~a~eA~~~Glv~~vv~~-~el~~~~~~~a~~l~~~~--~~a~~~~K~~~~~  250 (297)
T d1q52a_         176 GGYGSAYLARQVG-QKFAREIFFLGRTYTAEQMHQMGAVNAVAEH-AELETVGLQWAAEINAKS--PQAQRMLKFAFNL  250 (297)
T ss_dssp             CSTTTHHHHHHHC-HHHHHHHHHHCCEECHHHHHHHTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHH
T ss_pred             ccccccccccccC-ccceeeccccccccchHhhhhhccccccCch-HHhhHHHHHHhhhhccCC--HHHHHHHHHHHHH
Confidence            54 5689999999 9999999999999999999999999999998 889999999999999998  9999999988765

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=1e-07  Score=73.32  Aligned_cols=144  Identities=17%  Similarity=0.119  Sum_probs=96.1

Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCC-EEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHH
Q 026137           12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPG-SAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFR   90 (243)
Q Consensus        12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~-~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~   90 (243)
                      +|.|+.|       ++.++..++...+..++.++..+ -.+.+.+.      |+|+..                    ..
T Consensus        18 iI~l~g~-------I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~------GG~v~~--------------------g~   64 (183)
T d1yg6a1          18 VIFLTGQ-------VEDHMANLIVAQMLFLEAENPEKDIYLYINSP------GGVITA--------------------GM   64 (183)
T ss_dssp             EEEEESS-------BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEEC------CBCHHH--------------------HH
T ss_pred             EEEECCE-------ECHHHHHHHHHHHHHhhhhccCCceEEEEeCC------CccHHH--------------------HH
Confidence            3557776       88899999999888887543222 13555443      454443                    23


Q ss_pred             HHHHHHhcCCCcEEEEECCccchhHHHHHHhcC--EEEEecCccceeccccccCCCCChhh-HH---------------H
Q 026137           91 PLVAAMMDLPMPTVAAVNGHAAAAGFILALSHD--YVVMRRDKGVLYMSEVDIGLTLPDYC-AA---------------L  152 (243)
Q Consensus        91 ~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D--~~ia~~~~a~f~~p~~~~G~~~p~~g-~~---------------~  152 (243)
                      .++..+..++.|+...+.|.|.+.|.-+.+++|  .|++.++ ++|-+.+...|. ..... ..               .
T Consensus        65 ~i~d~i~~~~~~v~tv~~G~aaS~a~~I~~ag~~~~R~~~~n-s~~miH~~~~~~-~G~~~~i~~~~~~~~~~~~~~~~~  142 (183)
T d1yg6a1          65 SIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPN-SRVMIHQPLGGY-QGQATDIEIHAREILKVKGRMNEL  142 (183)
T ss_dssp             HHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTT-CEEEECCCEEEE-EEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCEEEEEEEEeHHHHHHHHHcCCCCceeeCCC-ceEEeccccccc-ccCHHHHHHHHHHHHHHHHHHHHH
Confidence            456677889999999999999999999999998  7999998 777766665454 11111 10               1


Q ss_pred             HHHHhCC-HHHHHHHHhcCcCCCHHHHHHcCchhhhcCC
Q 026137          153 FREKVGS-ATARRDVLLRAKKIKGEEALRMGLVEAAYDS  190 (243)
Q Consensus       153 l~~~~g~-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  190 (243)
                      +.++.|. .....+++-.-.-++|+||+++|+||+|+++
T Consensus       143 ~~~~tg~~~e~i~~~~~~d~~lta~EAl~~GliD~Ii~~  181 (183)
T d1yg6a1         143 MALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTH  181 (183)
T ss_dssp             HHHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSSSEECCC
T ss_pred             HHHHHCcCHHHHHHHhccCccccHHHHHHcCCCcEEecc
Confidence            1223331 2233444433344899999999999999975

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.60  E-value=3e-07  Score=70.42  Aligned_cols=142  Identities=18%  Similarity=0.128  Sum_probs=93.2

Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhc---CCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHH
Q 026137           12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAE---ATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKS   88 (243)
Q Consensus        12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~---~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~   88 (243)
                      +|.|+.|       +|.++..++...|..++.+   +.+  -+.+.+      .|+|+...                   
T Consensus        15 ii~l~g~-------I~~~~~~~~i~~l~~l~~~~~~~~I--~l~InS------~GG~v~~g-------------------   60 (179)
T d2cbya1          15 IIFLGSE-------VNDEIANRLCAQILLLAAEDASKDI--SLYINS------PGGSISAG-------------------   60 (179)
T ss_dssp             EEEECSC-------BCHHHHHHHHHHHHHHHHHCSSSCE--EEEEEE------CCBCHHHH-------------------
T ss_pred             EEEECCE-------ECHHHHHHHHHHHHHHhccCCCCeE--EEEeeC------CCCCHHHH-------------------
Confidence            3556776       8899999998887666543   233  355554      44444432                   


Q ss_pred             HHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcC--EEEEecCccceeccccccCCCCChhh-HH----H---------
Q 026137           89 FRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHD--YVVMRRDKGVLYMSEVDIGLTLPDYC-AA----L---------  152 (243)
Q Consensus        89 ~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D--~~ia~~~~a~f~~p~~~~G~~~p~~g-~~----~---------  152 (243)
                       ..++..+..++.|+...+.|.|.+.|.-+.+++|  .|++.++ ++|-+.+...|.. .... ..    .         
T Consensus        61 -l~i~d~i~~~~~~v~t~~~G~aaS~a~~il~ag~k~~R~~~~~-s~~miH~~~~~~~-G~~~~i~~~~~~l~~~~~~i~  137 (179)
T d2cbya1          61 -MAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPH-ARILMHQPLGGVT-GSAADIAIQAEQFAVIKKEMF  137 (179)
T ss_dssp             -HHHHHHHHHCSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTT-CEEECCCC-----------CHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHhhccceeeehhhhhhhHHHHHHHcCCCCceEECCc-hHhhcCCCchhcC-CccHHHHHHHHHHHHHHHHHH
Confidence             2355667788999999999999999999999999  8999998 7777666554441 1111 00    0         


Q ss_pred             --HHHHhCC-HHHHHHHHhcCcCCCHHHHHHcCchhhhcCC
Q 026137          153 --FREKVGS-ATARRDVLLRAKKIKGEEALRMGLVEAAYDS  190 (243)
Q Consensus       153 --l~~~~g~-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  190 (243)
                        +.++.|. .....+.+-.-.-++|+||+++||||+|+.+
T Consensus       138 ~i~a~~tg~~~~~i~~~~~~d~~l~a~EA~~~GliDeIi~~  178 (179)
T d2cbya1         138 RLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITR  178 (179)
T ss_dssp             HHHHHHHCCCHHHHHHHHHTTCEEEHHHHHHHTSCSEECSC
T ss_pred             HHHHHHhCCCHHHHHHhhcCCceecHHHHHHcCCCcEEecC
Confidence              1123331 2233444555666999999999999999865

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.54  E-value=1.8e-06  Score=66.56  Aligned_cols=141  Identities=9%  Similarity=0.017  Sum_probs=95.6

Q ss_pred             EEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcC--CCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHH
Q 026137           13 LTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEA--TPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFR   90 (243)
Q Consensus        13 i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~--~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~   90 (243)
                      |.|+.|       +|.++..++...+..++..+  .|  -+.|.      |.|+|+..                    ..
T Consensus        21 i~l~g~-------Id~~~~~~~i~~l~~l~~~~~~~I--~l~IN------S~GG~v~~--------------------g~   65 (190)
T d2f6ia1          21 IYLTDE-------INKKTADELISQLLYLDNINHNDI--KIYIN------SPGGSINE--------------------GL   65 (190)
T ss_dssp             EEECSC-------BCHHHHHHHHHHHHHHHHHCCSCE--EEEEE------ECCBCHHH--------------------HH
T ss_pred             EEECCe-------eCHHHHHHHHHHHHHHhccCCCCe--EEEEe------CchhhhhH--------------------HH
Confidence            456766       88999999999988887642  23  35554      44555443                    23


Q ss_pred             HHHHHHhcCCCcEEEEECCccchhHHHHHHhcC--EEEEecCccceeccccccCCCCChhh-H----H-----------H
Q 026137           91 PLVAAMMDLPMPTVAAVNGHAAAAGFILALSHD--YVVMRRDKGVLYMSEVDIGLTLPDYC-A----A-----------L  152 (243)
Q Consensus        91 ~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D--~~ia~~~~a~f~~p~~~~G~~~p~~g-~----~-----------~  152 (243)
                      .++..+..++.|+...+.|.|.+.|..+++++|  .|++.++ ++|-+.....|. ..... .    .           .
T Consensus        66 ai~d~i~~~~~~v~tv~~G~aaS~a~~i~~aG~kg~R~~~pn-s~imiH~~s~~~-~G~~~di~~~~~~l~~~~~~~~~i  143 (190)
T d2f6ia1          66 AILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPN-CRIMIHQPLGNA-FGHPQDIEIQTKEILYLKKLLYHY  143 (190)
T ss_dssp             HHHHHHHHSSSCEEEEEEEEECHHHHHHHHTSCTTCEEECTT-CEEESSCTTCSC-C--------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCCceEEEEeccccchhHHHHHhCCCCccccCCC-cEEEEccccccc-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence            355567778999999999999999999999988  6999988 778777776665 21111 0    0           1


Q ss_pred             HHHHhCC-HHHHHHHHhcCcCCCHHHHHHcCchhhhcCC
Q 026137          153 FREKVGS-ATARRDVLLRAKKIKGEEALRMGLVEAAYDS  190 (243)
Q Consensus       153 l~~~~g~-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  190 (243)
                      +.++.|. .....+.+-.-.-++|+||+++||||+|+++
T Consensus       144 ~a~~tg~~~~~i~~~~~~d~~l~a~EAl~~GliD~Ii~~  182 (190)
T d2f6ia1         144 LSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIET  182 (190)
T ss_dssp             HHHHHCCCHHHHHHHHHTTCEECHHHHHHHTSCSEECCC
T ss_pred             HHHHcCCCHHHHHHhccCCeeecHHHHHHcCCCcEEccc
Confidence            2233341 1122333334455999999999999999975

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.50  E-value=7.1e-07  Score=69.02  Aligned_cols=142  Identities=17%  Similarity=0.165  Sum_probs=92.6

Q ss_pred             EEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhc-CC-CCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHH
Q 026137           13 LTLTGSSNVDEHRLGPSAIDSILSAIAQAKAE-AT-PGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFR   90 (243)
Q Consensus        13 i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~-~~-~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~   90 (243)
                      |.|..|       ++.++.+.+...+..++.+ +. .- -+.|.+.|      +|+..                    .-
T Consensus        27 i~l~g~-------I~~~~~~~~~~~l~~l~~~~~~~~I-~l~InS~G------G~v~~--------------------gl   72 (192)
T d1y7oa1          27 IMLTGP-------VEDNMANSVIAQLLFLDAQDSTKDI-YLYVNTPG------GSVSA--------------------GL   72 (192)
T ss_dssp             EEEESC-------BCHHHHHHHHHHHHHHHHHCTTSCE-EEEEEECC------BCHHH--------------------HH
T ss_pred             EEECCE-------EchHHHHHHHHHHHHhhhhcccCce-eeeecCCC------CCHHH--------------------HH
Confidence            446666       7889999999888777643 22 21 35565544      43332                    23


Q ss_pred             HHHHHHhcCCCcEEEEECCccchhHHHHHHh--cCEEEEecCccceeccccccCCCCChhhH-------HH---------
Q 026137           91 PLVAAMMDLPMPTVAAVNGHAAAAGFILALS--HDYVVMRRDKGVLYMSEVDIGLTLPDYCA-------AL---------  152 (243)
Q Consensus        91 ~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~--~D~~ia~~~~a~f~~p~~~~G~~~p~~g~-------~~---------  152 (243)
                      .++..+..++.|+...+.|.|.+.|.-++++  +|.|++.++ +++-+.....|.. .....       ..         
T Consensus        73 ai~d~i~~~~~~v~t~~~G~aaS~as~il~aG~~g~R~~~pn-s~~miHq~~~~~~-G~~~~~~~~~~~~el~~~~~~i~  150 (192)
T d1y7oa1          73 AIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPN-AEYMIHQPMGGTG-GGTQQTDMAIAPEHLLKTRNTLE  150 (192)
T ss_dssp             HHHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTT-CEEECCCCC---------------CHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcceEEEeccccCCccceeeeecCCCccccchH-HHHHhhccccccc-ccchhHHHHHHHHHHHHHHHHHH
Confidence            4566778889999999999999999888776  679999998 7777766665541 11100       00         


Q ss_pred             --HHHHhCC-HHHHHHHHhcCcCCCHHHHHHcCchhhhcCC
Q 026137          153 --FREKVGS-ATARRDVLLRAKKIKGEEALRMGLVEAAYDS  190 (243)
Q Consensus       153 --l~~~~g~-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~  190 (243)
                        +..+.|. .....+.+-.-.-++|+||+++||||+|+.+
T Consensus       151 ~i~~~~tg~~~~~i~~~~~rd~~lsa~EAleyGliD~Ii~~  191 (192)
T d1y7oa1         151 KILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMAN  191 (192)
T ss_dssp             HHHHHHHTCCHHHHHHHHHSCCCBCHHHHHHHTSCSEECCC
T ss_pred             HHHHHHhCCCHHHHHHhhcCCceecHHHHHHcCCCcEEecC
Confidence              1222331 2334455555566999999999999999865

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=98.34  E-value=3.6e-06  Score=64.91  Aligned_cols=135  Identities=13%  Similarity=0.115  Sum_probs=91.1

Q ss_pred             CCHHHHHHHHHHHHHHHhc-C--CCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026137           26 LGPSAIDSILSAIAQAKAE-A--TPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMP  102 (243)
Q Consensus        26 l~~~~~~~l~~~l~~~~~~-~--~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp  102 (243)
                      ++.++..++...+..++.. +  .+  .+.|.+.|      +|+..                    ...++..+..++.|
T Consensus        35 I~~~~~~~~i~~l~~l~~~~~~~~I--~l~InS~G------G~v~~--------------------g~~i~d~i~~~~~~   86 (193)
T d1tg6a1          35 IDDSVASLVIAQLLFLQSESNKKPI--HMYINSPG------GVVTA--------------------GLAIYDTMQYILNP   86 (193)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCE--EEEEEECC------BCHHH--------------------HHHHHHHHHHSCSC
T ss_pred             EchHHHHHHHHHHHHhcccCCCcEE--EEEeecCc------ccHHH--------------------HHHHHHHHHhhcCc
Confidence            7888888888877777743 2  34  36665554      33321                    23456677889999


Q ss_pred             EEEEECCccchhHHHHHHhcC--EEEEecCccceeccccccCCCCChhh-HHH---------------HHHHhCC-HHHH
Q 026137          103 TVAAVNGHAAAAGFILALSHD--YVVMRRDKGVLYMSEVDIGLTLPDYC-AAL---------------FREKVGS-ATAR  163 (243)
Q Consensus       103 ~Ia~v~G~~~G~G~~lal~~D--~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~---------------l~~~~g~-~~~a  163 (243)
                      |...+-|.|.+.|.-+.+++|  .|++.++ ++|-+.....|. ..... ...               +..+.|. ....
T Consensus        87 V~tv~~G~aaS~a~~il~aG~~g~R~~~pn-s~~miHq~~~~~-~G~~~di~~~~~el~~~~~~i~~i~a~~Tg~~~~~i  164 (193)
T d1tg6a1          87 ICTWCVGQAASMGSLLLAAGTPGMRHSLPN-SRIMIHQPSGGA-RGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVI  164 (193)
T ss_dssp             EEEEEEEEEETHHHHHHHTSCTTCEEECTT-CEEEECCCCCCC-CSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred             eEEEEccchHHHHHHHhhcCccCccccCcc-cHHHhcCCccCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence            999999999999999999999  5999998 778777766555 21111 100               1122331 2233


Q ss_pred             HHHHhcCcCCCHHHHHHcCchhhhcCC
Q 026137          164 RDVLLRAKKIKGEEALRMGLVEAAYDS  190 (243)
Q Consensus       164 ~~l~l~g~~~~a~eA~~~Glv~~vv~~  190 (243)
                      ++.+-.-.-++|+||+++||||+|+.+
T Consensus       165 ~~~~~rD~~lta~EAl~yGliD~Ii~~  191 (193)
T d1tg6a1         165 ESAMERDRYMSPMEAQEFGILDKVLVH  191 (193)
T ss_dssp             HHHHSSCEEECHHHHHHHTSCSEECSS
T ss_pred             HHHhccCccCCHHHHHHcCCCCEEccC
Confidence            444433445999999999999999864

>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.11  E-value=7.5e-05  Score=59.63  Aligned_cols=140  Identities=18%  Similarity=0.198  Sum_probs=87.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026137           23 EHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMP  102 (243)
Q Consensus        23 ~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp  102 (243)
                      .-+++....+.+..+.+.+.++.-+- +.++.+      .|..+.+-..         ......+.+. .. ....-..|
T Consensus        99 gGs~g~~~~~K~~r~~e~A~~~~~P~-I~~~ds------gG~r~~e~~~---------~l~~~~~~~~-~~-~~~s~~iP  160 (251)
T d1vrga1          99 GGSLGEMHAKKIVKLLDLALKMGIPV-IGINDS------GGARIQEGVD---------ALAGYGEIFL-RN-TLASGVVP  160 (251)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHHTCCE-EEEEEE------CSBCGGGTHH---------HHHHHHHHHH-HH-HHHTTTSC
T ss_pred             hcccchHHHHHHHHHHHHHHHcCCCE-EEEEcC------CCcccccccc---------ccccchHHHH-HH-HHHCCCCC
Confidence            45788888899999999888776553 344433      3444433111         1111112121 12 22345799


Q ss_pred             EEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHH----
Q 026137          103 TVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEA----  178 (243)
Q Consensus       103 ~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA----  178 (243)
                      +|+++.|+|.||+......||++|++++.+.+       ++..|        +.+       + ..+|+.++.++.    
T Consensus       161 ~I~vv~G~~~gG~a~~~~~~d~~im~~~~a~i-------~~aGp--------~vv-------~-~~~ge~~~~eelGga~  217 (251)
T d1vrga1         161 QITVIAGPCAGGAVYSPALTDFIVMVDQTARM-------FITGP--------NVI-------K-AVTGEEISQEDLGGAM  217 (251)
T ss_dssp             EEEEEEEEEBGGGGHHHHHSSEEEEETTTCBC-------BSSCH--------HHH-------H-HHHCCCCCHHHHHBHH
T ss_pred             EEEEEccCccccceehhhhCceEEEEccceeE-------EecCc--------hhh-------h-hhcCCcCChHHccchh
Confidence            99999999999999999999999998775543       33111        111       1 235677887765    


Q ss_pred             ---HHcCchhhhcCChhHHHHHHHHHHHHHhc
Q 026137          179 ---LRMGLVEAAYDSEERVAEASMRLGKQLAG  207 (243)
Q Consensus       179 ---~~~Glv~~vv~~~~~l~~~a~~~a~~~~~  207 (243)
                         .+-|.+|.+++++    +.+.+.++++.+
T Consensus       218 ~h~~~sG~~D~v~~de----~~a~~~ir~lLs  245 (251)
T d1vrga1         218 VHNQKSGNAHFLADND----EKAMSLVRTLLS  245 (251)
T ss_dssp             HHHHTSCCCSEEESSH----HHHHHHHHHHHT
T ss_pred             hhhhccccceEEECCH----HHHHHHHHHHHH
Confidence               4679999999984    344555555544

>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.04  E-value=0.0002  Score=57.27  Aligned_cols=140  Identities=17%  Similarity=0.170  Sum_probs=86.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026137           23 EHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMP  102 (243)
Q Consensus        23 ~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp  102 (243)
                      .-+++....+.+..+.+.+.++.-+- +.++.|.|      ..+.+-..         ........+. .. ....-..|
T Consensus       102 gGS~g~~~g~K~~ra~e~A~~~~lP~-I~l~dsgG------ar~~eg~~---------~~~~~~~~~~-~~-~~~~~~vP  163 (258)
T d2a7sa1         102 GGSLGEVYGEKIVKVQELAIKTGRPL-IGINDGAG------ARIQEGVV---------SLGLYSRIFR-NN-ILASGVIP  163 (258)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHHTCCE-EEEECCCS------BCGGGCTH---------HHHHHHHHHH-HH-HHHTTTSC
T ss_pred             CCccchhhhhHHHHHHHHHHhcCCce-EEEeccCC------cccccccc---------cccchhhHHH-HH-HHHcCCCC
Confidence            45788999999999999999886654 44444433      33332110         0011111112 11 22345699


Q ss_pred             EEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHH----
Q 026137          103 TVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEA----  178 (243)
Q Consensus       103 ~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA----  178 (243)
                      +|+++.|+|.||+......||++|+.++.+++       ++.-|    ..+.            ..+|+.++.+|.    
T Consensus       164 ~I~~v~G~~~gG~a~~~~~~d~~vm~~~~a~i-------~~aGP----~vV~------------~~~ge~~~~eeLGga~  220 (258)
T d2a7sa1         164 QISLIMGAAAGGHVYSPALTDFVIMVDQTSQM-------FITGP----DVIK------------TVTGEEVTMEELGGAH  220 (258)
T ss_dssp             EEEEECSCCBSGGGHHHHHSSEEEEEBTTBBC-------BSSCH----HHHH------------HHHCCCCCHHHHHBHH
T ss_pred             EEEEEecCcccHHHHHHHhccceEeecCceEE-------EccCh----hHHH------------HhcCCccChhhccCHh
Confidence            99999999999999999999999998775544       33211    1121            225566766643    


Q ss_pred             ---HHcCchhhhcCChhHHHHHHHHHHH
Q 026137          179 ---LRMGLVEAAYDSEERVAEASMRLGK  203 (243)
Q Consensus       179 ---~~~Glv~~vv~~~~~l~~~a~~~a~  203 (243)
                         .+.|.+|.+++++++..+.+.++..
T Consensus       221 ~h~~~sG~~D~v~~de~~a~~~~r~~Ls  248 (258)
T d2a7sa1         221 THMAKSGTAHYAASGEQDAFDYVRELLS  248 (258)
T ss_dssp             HHHHTSCCCSEEESSHHHHHHHHHHHHH
T ss_pred             HhhhhccccceEeCCHHHHHHHHHHHHH
Confidence               4679999999984444444444433

>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=98.02  E-value=0.00014  Score=58.20  Aligned_cols=142  Identities=17%  Similarity=0.137  Sum_probs=87.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCC
Q 026137           22 DEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPM  101 (243)
Q Consensus        22 ~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~k  101 (243)
                      ..-+++....+.+..+.+.+.++.-+  +|.+.-.|     |+.+.+-..         ........+ ..... ..-..
T Consensus       100 ~gGS~g~~~~~K~~r~~e~A~~~~lP--lI~l~dsg-----Garm~e~~~---------~~~~~~~~~-~~~~~-~s~~v  161 (258)
T d1xnya1         100 FGGALGEVYGQKIVKVMDFALKTGCP--VVGINDSG-----GARIQEGVA---------SLGAYGEIF-RRNTH-ASGVI  161 (258)
T ss_dssp             GGGCBCHHHHHHHHHHHHHHHHHTCC--EEEEECCC-----SBCGGGTHH---------HHHHHHHHH-HHHHH-TTTTS
T ss_pred             hcCccchhhHHHHHHHHHHHHHcCCc--eEEEecCC-----CcccCcccc---------cccchhHHH-HHHHH-HcCCC
Confidence            34578899999999999999887655  45554433     333332111         111111111 12222 23459


Q ss_pred             cEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHH---
Q 026137          102 PTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEA---  178 (243)
Q Consensus       102 p~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA---  178 (243)
                      |+|+++.|+|.||+.....+||++++.++.+++       ++.-|    ..+.            ..+|+.++.+|+   
T Consensus       162 P~I~vv~G~~~gG~a~~~~~~~~vim~~~~a~i-------~~aGP----~vv~------------~~~ge~i~~eelgga  218 (258)
T d1xnya1         162 PQISLVVGPCAGGAVYSPAITDFTVMVDQTSHM-------FITGP----DVIK------------TVTGEDVGFEELGGA  218 (258)
T ss_dssp             CEEEEECSEEEGGGGHHHHHSSEEEEETTTCEE-------ESSCH----HHHH------------HHHCCCCCHHHHHBH
T ss_pred             CEEEEEcCCcChhHHHHHHhccchhhcccceEE-------EecCH----HHHH------------HHhcCccChHHhccH
Confidence            999999999999999999999999988765544       33212    1111            235666777764   


Q ss_pred             ----HHcCchhhhcCChhHHHHHHHHHHHH
Q 026137          179 ----LRMGLVEAAYDSEERVAEASMRLGKQ  204 (243)
Q Consensus       179 ----~~~Glv~~vv~~~~~l~~~a~~~a~~  204 (243)
                          ..-|++|.+++++++..+.+.++..-
T Consensus       219 ~~h~~~sG~~d~v~~de~ea~~~~r~~Ls~  248 (258)
T d1xnya1         219 RTHNSTSGVAHHMAGDEKDAVEYVKQLLSY  248 (258)
T ss_dssp             HHHHHTSSCCSEEESSHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCeeEEEeCCHHHHHHHHHHHHHh
Confidence                45699999999855555555544443

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=6.8e-05  Score=61.65  Aligned_cols=137  Identities=16%  Similarity=0.154  Sum_probs=94.2

Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137           25 RLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV  104 (243)
Q Consensus        25 ~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I  104 (243)
                      +++++-+..-.+.++.++.-.-+  +|-+-=+++ |-.|.+-++.              -..+...+.+..+..+++|+|
T Consensus       131 ~~~p~~~rKa~r~~~~a~~~~~P--ii~~vDtpG-~~~g~~~E~~--------------g~~~~~a~~~~~~~~~~vP~i  193 (316)
T d2f9ya1         131 MPAPEGYRKALRLMQMAERFKMP--IITFIDTPG-AYPGVGAEER--------------GQSEAIARNLREMSRLGVPVV  193 (316)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCC--EEEEEEESC-SCCSHHHHHT--------------THHHHHHHHHHHHHTCSSCEE
T ss_pred             cccHHHHHHHHHHHHHHHHcCcc--eEEEEecCc-ccCCcccccc--------------cHHHHHHHHHHHHHhCCCceE
Confidence            57889999999999888876544  333322222 3333322221              234556778888999999999


Q ss_pred             EEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCch
Q 026137          105 AAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLV  184 (243)
Q Consensus       105 a~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv  184 (243)
                      +.|-|.+.|||+.....+|.+++.++ ++++.      + .|.+.+..+-+---....+.    ....+++++.++.|+|
T Consensus       194 ~vv~g~g~~gga~a~~~~d~v~m~~~-a~~sv------i-spEg~AsILwkd~~~a~eaA----ealklta~dL~~lgiI  261 (316)
T d2f9ya1         194 CTVIGEGGSGGALAIGVGDKVNMLQY-STYSV------I-SPEGCASILWKSADKAPLAA----EAMGIIRPRLKELKLI  261 (316)
T ss_dssp             EEEEEEEEHHHHHTTCCCSEEEECTT-CEEES------S-CHHHHHHHHSSCSTTHHHHH----HHHTCSHHHHHTTTSC
T ss_pred             EEEEhhhhchhhhhhhhhhHHHHHhh-hHHhh------c-cchhhhhHhhccchhhcchH----HHHhhhhHHHHHcCch
Confidence            99999999999988889999999998 88862      1 35454555433222122222    2345899999999999


Q ss_pred             hhhcCC
Q 026137          185 EAAYDS  190 (243)
Q Consensus       185 ~~vv~~  190 (243)
                      |+|++.
T Consensus       262 DeII~E  267 (316)
T d2f9ya1         262 DSIIPE  267 (316)
T ss_dssp             SCCCCC
T ss_pred             hhcccC
Confidence            999964

>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=0.00012  Score=58.92  Aligned_cols=150  Identities=13%  Similarity=0.152  Sum_probs=88.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026137           23 EHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMP  102 (243)
Q Consensus        23 ~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp  102 (243)
                      .-+++....+.+..+++.+.++.-+  +|.++.     |.|..+.+-..         . .............+.....|
T Consensus       109 gGS~g~~~~~Ki~~a~e~A~~~~lP--lI~~~~-----sgG~r~~e~~~---------s-l~~~~~~~~~~~~~~~~~vP  171 (263)
T d2f9yb1         109 GGSMGSVVGARFVRAVEQALEDNCP--LICFSA-----SGGARMQEALM---------S-LMQMAKTSAALAKMQERGLP  171 (263)
T ss_dssp             TTCBCTHHHHHHHHHHHHHHHHTCC--EEEEEE-----ESSBCGGGTHH---------H-HHHHHHHHHHHHHHHHTTCC
T ss_pred             ccccccchhhHHhHHHHHHHHcCCC--eEEEec-----CCCcccccccc---------h-hhcchhHHHHHHHHHhCCCc
Confidence            4578888899999999988887655  344432     33444443111         1 11122233334445567789


Q ss_pred             EEEEECCccchhHHH-HHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHc
Q 026137          103 TVAAVNGHAAAAGFI-LALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRM  181 (243)
Q Consensus       103 ~Ia~v~G~~~G~G~~-lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~  181 (243)
                      +|+++.|+|.||+.. +++++|++++.+. +.+       |+.    |........|      + -+.-+.-+++-..+.
T Consensus       172 ~I~v~~g~~~GG~aa~~~~~~d~i~~~~~-s~i-------~~a----GP~vve~~~g------e-~~~e~~g~a~~~~~~  232 (263)
T d2f9yb1         172 YISVLTDPTMGGVSASFAMLGDLNIAEPK-ALI-------GFA----GPRVIEQTVR------E-KLPPGFQRSEFLIEK  232 (263)
T ss_dssp             EEEEEEEEEEHHHHTTGGGCCSEEEECTT-CBE-------ESS----CHHHHHHHHT------S-CCCTTTTBHHHHGGG
T ss_pred             eEEEecCCcchHHHhhhhhcCceEeeecc-eee-------ecc----CHHHHhhhcC------C-cCChhhccHHHHHhC
Confidence            999999999999865 6777777777544 544       332    2222223333      1 112223355556678


Q ss_pred             CchhhhcCChhHHHHHHHHHHHHHhcCC
Q 026137          182 GLVEAAYDSEERVAEASMRLGKQLAGRK  209 (243)
Q Consensus       182 Glv~~vv~~~~~l~~~a~~~a~~~~~~~  209 (243)
                      |+||.++++ ++.-++..++.+-+...|
T Consensus       233 G~iD~vv~~-ee~~~~l~~~l~~L~~~p  259 (263)
T d2f9yb1         233 GAIDMIVRR-PEMRLKLASILAKLMNLP  259 (263)
T ss_dssp             TCCSEECCH-HHHHHHHHHHHHHHTTCC
T ss_pred             CCCCEEECC-HHHHHHHHHHHHHHhhCC
Confidence            999999986 655455555555555443

>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=97.79  E-value=0.00023  Score=56.74  Aligned_cols=139  Identities=17%  Similarity=0.261  Sum_probs=86.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026137           23 EHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMP  102 (243)
Q Consensus        23 ~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp  102 (243)
                      .-+++....+.+..+.+.+.++.-+- +.++.|.      |..+.+-         ......+...+..+ .++.. ..|
T Consensus       102 GGS~g~~~~~K~~~a~e~A~~~~lPl-V~l~~sg------G~r~~eg---------~~~l~~~~~~~~~~-~~ls~-~vP  163 (253)
T d1on3a1         102 GGSAGETQSTKVVETMEQALLTGTPF-LFFYDSG------GARIQEG---------IDSLSGYGKMFFAN-VKLSG-VVP  163 (253)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHHTCCE-EEEEEEC------SBCGGGT---------HHHHHHHHHHHHHH-HHHTT-TSC
T ss_pred             cccceecccchhhhhHHHHhhcCCCe-EEEEecC------CCccccc---------ceeccccceehHHH-HHHhc-cce
Confidence            45788999999999999998876654 4444433      3334321         11111222223332 23333 489


Q ss_pred             EEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHH-----
Q 026137          103 TVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEE-----  177 (243)
Q Consensus       103 ~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~e-----  177 (243)
                      +|+++.|+|.||+.....+||++++.++ +.++       +.-|    ..+...            +|+.++.+|     
T Consensus       164 ~i~vv~Gp~~GG~a~~~~~~d~vi~~~~-a~i~-------~aGP----~vVe~~------------~ge~~~~eelGga~  219 (253)
T d1on3a1         164 QIAIIAGPCAGGASYSPALTDFIIMTKK-AHMF-------ITGP----QVIKSV------------TGEDVTADELGGAE  219 (253)
T ss_dssp             EEEEEEEEEESGGGHHHHHSSEEEEETT-CEEE-------SSCH----HHHHHH------------HCCCCCHHHHHSHH
T ss_pred             EEEEEecCcccceeeccchhhheecccc-ceEE-------ecCc----chhhhh------------hCCcCChHhccCHH
Confidence            9999999999999999999999999876 5443       3111    122222            345555442     


Q ss_pred             --HHHcCchhhhcCChhHHHHHHHHHHHHHhc
Q 026137          178 --ALRMGLVEAAYDSEERVAEASMRLGKQLAG  207 (243)
Q Consensus       178 --A~~~Glv~~vv~~~~~l~~~a~~~a~~~~~  207 (243)
                        +.+.|.||.++++ |   +.+.++++++.+
T Consensus       220 ~h~~~sG~iD~v~~~-e---~~a~~~~r~lls  247 (253)
T d1on3a1         220 AHMAISGNIHFVAED-D---DAAELIAKKLLS  247 (253)
T ss_dssp             HHHHTTCCCSEEESS-H---HHHHHHHHHHHH
T ss_pred             HhhhccccceEEECC-H---HHHHHHHHHHHH
Confidence              3457999999998 4   346666665544

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=97.49  E-value=0.00021  Score=58.04  Aligned_cols=161  Identities=16%  Similarity=0.200  Sum_probs=86.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026137           24 HRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPT  103 (243)
Q Consensus        24 N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~  103 (243)
                      -++++...+.+.++++.+.+..-+  +|.+.-     |.|+.+.+-..... .. ...    ...+.. ...+.....|+
T Consensus       118 Gs~~~~~~~K~~r~~~lA~~~~lP--~I~l~d-----s~Ga~~~~~~e~~~-~~-~~~----g~~~~~-~a~ls~~~VP~  183 (287)
T d1pixa2         118 GAWVPGQAECLLRASDTAKTLHVP--LVYVLN-----CSGVKFDEQEKVYP-NR-RGG----GTPFFR-NAELNQLGIPV  183 (287)
T ss_dssp             TEECTTHHHHHHHHHHHHHHHTCC--EEEEEC-----CCEECGGGHHHHSS-ST-TST----THHHHH-HHHHHHTTCCE
T ss_pred             ccchhhHHHHHHHHHHhhhhcCCC--EEEEec-----CCcccCCcchhhcc-ch-hhH----HHHHHH-HHHHhhcCCCe
Confidence            478888999999999888887655  344433     33444432111000 00 000    011111 22355578999


Q ss_pred             EEEECCccchhHHHHHHhcCEEEEecCccceecc--ccccCCCCChhhH-HHHHHHhCCHHHHHHHHhcCcCCCHHH--H
Q 026137          104 VAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMS--EVDIGLTLPDYCA-ALFREKVGSATARRDVLLRAKKIKGEE--A  178 (243)
Q Consensus       104 Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p--~~~~G~~~p~~g~-~~l~~~~g~~~~a~~l~l~g~~~~a~e--A  178 (243)
                      |++|-|+|.|||...+++||++++.++ +.+.+.  .+--+. .+..+. ......+. .... + -.+-+.+.+.+  +
T Consensus       184 Isvv~G~~~gGgAy~~~~~~~i~~~~~-a~i~~~Gp~vv~~~-~~~~~~~~~~~~ei~-~~~g-e-~~~~eeLGGa~~H~  258 (287)
T d1pixa2         184 IVGIYGTNPAGGGYHSISPTVIIAHEK-ANMAVGGAGIMGGM-NPKGHVDLEYANEIA-DMVD-R-TGKTEPPGAVDIHY  258 (287)
T ss_dssp             EEEECSEEETHHHHHHHSSSEEEEETT-CEEESCCCTTCCSC-CSSSSCCHHHHHHHH-HHHH-T-TCCCCCSSBHHHHT
T ss_pred             EEEecCCccccceeccccceeEEecCC-eEEEEECHHHhccc-chhhhhhhhhHHHHH-hhhc-c-cccccccccHHHhh
Confidence            999999999999888888888888765 555442  222222 122211 11222221 1111 1 12334444444  3


Q ss_pred             HHcCchhhhcCChhHHHHHHHHHHHHHhc
Q 026137          179 LRMGLVEAAYDSEERVAEASMRLGKQLAG  207 (243)
Q Consensus       179 ~~~Glv~~vv~~~~~l~~~a~~~a~~~~~  207 (243)
                      ..-|.+|.++++++    ++.+.++++.+
T Consensus       259 ~~sG~~d~v~~~e~----~ai~~~r~~ls  283 (287)
T d1pixa2         259 TETGFMREVYASEE----GVLEGIKKYVG  283 (287)
T ss_dssp             TTSCCSCEEESSHH----HHHHHHHHHHH
T ss_pred             hhcccceeecCCHH----HHHHHHHHHHh
Confidence            45699999999843    44555555443

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.38  E-value=0.0037  Score=49.80  Aligned_cols=166  Identities=13%  Similarity=0.102  Sum_probs=102.7

Q ss_pred             EEEEcCCCCCCC--CCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHH
Q 026137           12 VLTLTGSSNVDE--HRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSF   89 (243)
Q Consensus        12 ~i~ln~p~~~~~--N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~   89 (243)
                      -+.-|+|   ..  .+++++-.....+.++.++...-+  +|.+.-. ..|..|.+-+.              ....+..
T Consensus        70 gvian~~---~~~~G~~~~~~a~Kaa~fi~lc~~~~iP--li~l~Dt-pGf~~G~~~E~--------------~g~~~~g  129 (264)
T d1vrga2          70 GIVANQP---SVLAGVLDIDSSDKAARFIRFLDAFNIP--ILTFVDT-PGYLPGVAQEH--------------GGIIRHG  129 (264)
T ss_dssp             EEEEECT---TSGGGCBCHHHHHHHHHHHHHHHHTTCC--EEEEEEE-CCBCCCHHHHH--------------TTHHHHH
T ss_pred             EEEeccc---cccccchhhhhHHHHHHHHHHHHHhCCc--eEEEeec-ccccccHHHHH--------------HhHHHHH
Confidence            3344666   44  369999999999999888876433  4555433 23555443322              2246677


Q ss_pred             HHHHHHHhcCCCcEEEEECCccchhHHHHHH----hcCEEEEecCccceeccccccCCCCChhhHHHHHHH-h---CCHH
Q 026137           90 RPLVAAMMDLPMPTVAAVNGHAAAAGFILAL----SHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREK-V---GSAT  161 (243)
Q Consensus        90 ~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal----~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~-~---g~~~  161 (243)
                      .+++.++..+.+|.|+.|=|.++|+|..-.+    .+|++++.++ +.++       +..|..++..+.++ +   ....
T Consensus       130 a~~~~a~a~~~vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~-a~~~-------vm~pe~aa~v~~~~~l~~~~~~~  201 (264)
T d1vrga2         130 AKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPS-AEIA-------VMGPEGAANIIFKREIEASSNPE  201 (264)
T ss_dssp             HHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTT-CEEE-------SSCHHHHHHHHTHHHHHHSSCHH
T ss_pred             HHHHHHHhcCCCCEEEEEeCCcccHHhhhccCCccCCCeeeeccc-eeEE-------ecCHHHhhhhhhhhhhhhhhCcH
Confidence            8899999999999999999999998874333    4888888776 6554       42233333333221 1   1000


Q ss_pred             HH-HHH--HhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHh
Q 026137          162 AR-RDV--LLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLA  206 (243)
Q Consensus       162 ~a-~~l--~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~  206 (243)
                      .. .++  ...-+.-++-.+.+.|++|.|+++ .+.........+.+.
T Consensus       202 ~~~~~~~~~~~e~~~~~~~aa~~g~iD~VIdP-~dTR~~L~~~Le~l~  248 (264)
T d1vrga2         202 ETRRKLIEEYKQQFANPYIAASRGYVDMVIDP-RETRKYIMRALEVCE  248 (264)
T ss_dssp             HHHHHHHHHHHHHTSSHHHHHHTTSSSEECCG-GGHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHcCCCCeeECH-HHHHHHHHHHHHHHh
Confidence            00 110  111222467888999999999988 556666555555443

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.27  E-value=0.0041  Score=49.74  Aligned_cols=164  Identities=10%  Similarity=0.061  Sum_probs=100.6

Q ss_pred             EEEEcCCCCCC-CCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHH
Q 026137           12 VLTLTGSSNVD-EHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFR   90 (243)
Q Consensus        12 ~i~ln~p~~~~-~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~   90 (243)
                      -|.-|+|.  . ...++.+......+.++.++...- = +|.+.-. ..|..|.+-+.              ....+...
T Consensus        73 gvian~~~--~~~G~~~~~~~~Ka~rfi~lc~~~~i-P-lv~l~dt-pGf~~G~~~E~--------------~g~~~~ga  133 (271)
T d2a7sa2          73 GIVANQPT--HFAGCLDINASEKAARFVRTCDCFNI-P-IVMLVDV-PGFLPGTDQEY--------------NGIIRRGA  133 (271)
T ss_dssp             EEEEECTT--TGGGCBCHHHHHHHHHHHHHHHHTTC-C-EEEEEEE-CCBCCCHHHHH--------------HCHHHHHH
T ss_pred             EEEecccc--ccCCCcCHHHHHHHHHHHHHHHHhCC-c-eEEeech-hhhhhhccHHH--------------hhHHHHHH
Confidence            34445552  2 247999999999999988877543 3 5555433 23555543332              23456778


Q ss_pred             HHHHHHhcCCCcEEEEECCccchhHHHHHH----hcCEEEEecCccceeccccccCCCCChhh-HHHHHH-HhCCHH---
Q 026137           91 PLVAAMMDLPMPTVAAVNGHAAAAGFILAL----SHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFRE-KVGSAT---  161 (243)
Q Consensus        91 ~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal----~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~-~~g~~~---  161 (243)
                      +++.++..+..|.|+.+=|.++|+|....+    .+|++++.++ +.+       |+ +++-+ ...+.+ .+. ..   
T Consensus       134 ~~~~a~a~~~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~-A~i-------gv-Mgpegaa~v~~~~~l~-~~~~~  203 (271)
T d2a7sa2         134 KLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPT-AQI-------AV-MGASGAVGFVYRQQLA-EAAAN  203 (271)
T ss_dssp             HHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTT-CEE-------ES-SCHHHHHHHHTTTTTT-GGGTS
T ss_pred             HHHHHHHhCCCCeEEEEeCCccchhhhhhcccccccceEEEecc-eeE-------ee-cCHHHHHHHHHHHhhh-hhhhc
Confidence            899999999999999999999998765433    3688888776 655       44 33333 333222 221 00   


Q ss_pred             -------HHH-HHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHH
Q 026137          162 -------ARR-DVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQL  205 (243)
Q Consensus       162 -------~a~-~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~  205 (243)
                             +.+ ..-..-+.-++..|.+.|++|.|+++ .+..+......+.+
T Consensus       204 ~~~~~~~~~~~~~e~~e~~~~p~~aa~~g~iD~VIdP-~dTR~~L~~~L~~~  254 (271)
T d2a7sa2         204 GEDIDKLRLRLQQEYEDTLVNPYVAAERGYVDAVIPP-SHTRGYIGTALRLL  254 (271)
T ss_dssp             SCCTTSSTTHHHHHHHTTTSBSHHHHHHTSSSEECCG-GGHHHHHHHHHHHT
T ss_pred             ccchHHHHHHHHHHHHHHhcCHHHHHHcCCCCeeECH-HHHHHHHHHHHHHH
Confidence                   000 11112233467788899999999998 55555544444443

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=97.20  E-value=0.0051  Score=48.93  Aligned_cols=165  Identities=11%  Similarity=0.033  Sum_probs=100.2

Q ss_pred             EcCCCCCC-CCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHH
Q 026137           15 LTGSSNVD-EHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLV   93 (243)
Q Consensus        15 ln~p~~~~-~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~   93 (243)
                      =|+|.  . ..+++++-.....+.++.++... += +|.+.-. ..|..|.+-+.              ....+...+++
T Consensus        73 an~~~--~~~G~~~~~~a~Kaarfi~lc~~~~-iP-lv~l~D~-pGf~~G~~~E~--------------~g~i~~ga~~~  133 (264)
T d1on3a2          73 ANQPS--VMSGCLDINASDKAAEFVNFCDSFN-IP-LVQLVDV-PGFLPGVQQEY--------------GGIIRHGAKML  133 (264)
T ss_dssp             EECTT--SGGGCBCHHHHHHHHHHHHHHHHTT-CC-EEEEEEE-CCBCCCHHHHH--------------TTHHHHHHHHH
T ss_pred             eccch--hcccccChHHHHHHHHHHHHHHhcC-Cc-eEEEecc-ccccccHHHHH--------------HHHHHHHHHHH
Confidence            35552  3 34799999999999998888753 33 4555432 23555553332              23467788899


Q ss_pred             HHHhcCCCcEEEEECCccchhHHHHHH----hcCEEEEecCccceeccccccCCCCChhhHHHHHH-Hh---CCHH--HH
Q 026137           94 AAMMDLPMPTVAAVNGHAAAAGFILAL----SHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFRE-KV---GSAT--AR  163 (243)
Q Consensus        94 ~~l~~~~kp~Ia~v~G~~~G~G~~lal----~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~-~~---g~~~--~a  163 (243)
                      .++.++.+|.|+.|=|.++|+|..-.+    ..|++++.++ +.+       |...|.+++..+.+ .+   ....  ..
T Consensus       134 ~a~a~~~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~-A~~-------~vMg~Egaa~v~~~~el~a~~~~~~~~~  205 (264)
T d1on3a2         134 YAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPS-AEI-------AVMGAEGAANVIFRKEIKAADDPDAMRA  205 (264)
T ss_dssp             HHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTT-CEE-------ESSCHHHHHHHHTHHHHHHSSCHHHHHH
T ss_pred             HHHHcCCCCEEEEEeccccCccccccccccCChhheeeHHh-hHh-------hhccHHHHHHHHHhhhhhhhhhhhhhhH
Confidence            999999999999999999998765443    3577777765 544       44223333333221 11   0000  00


Q ss_pred             HHH-HhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhc
Q 026137          164 RDV-LLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAG  207 (243)
Q Consensus       164 ~~l-~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~  207 (243)
                      ..+ -..-+.-++-.|.+.|+||.|+++ .+.........+.+..
T Consensus       206 ~~~~e~~~~~~~p~~aA~~g~iD~VIdP-~eTR~~L~~aLe~~~~  249 (264)
T d1on3a2         206 EKIEEYQNAFNTPYVAAARGQVDDVIDP-ADTRRKIASALEMYAT  249 (264)
T ss_dssp             HHHHHHHHHHSSHHHHHHTTSSSEECCG-GGHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHhcCHHHHHHcCCCCeeECH-HHHHHHHHHHHHHHhc
Confidence            000 111222457788899999999988 5566655555555543

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.17  E-value=0.0052  Score=48.88  Aligned_cols=167  Identities=11%  Similarity=0.078  Sum_probs=102.3

Q ss_pred             EEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHH
Q 026137           13 LTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPL   92 (243)
Q Consensus        13 i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l   92 (243)
                      |.-|+|. ....+++.+......+.++.++...-+  +|.+.-. ..|..|.+-+.              ....+...++
T Consensus        69 via~~~~-~~~G~~~~~~a~Ka~~fi~lc~~~~iP--li~l~d~-pGf~~G~~~E~--------------~g~~~~ga~~  130 (263)
T d1xnya2          69 IVANQPM-QFAGCLDITASEKAARFVRTCDAFNVP--VLTFVDV-PGFLPGVDQEH--------------DGIIRRGAKL  130 (263)
T ss_dssp             EEEECTT-TGGGCBCHHHHHHHHHHHHHHHHTTCC--EEEEEEE-CCBCCCHHHHH--------------TTHHHHHHHH
T ss_pred             EEecccc-eecCCcchhhHHHHHHHHHHHHHhCCc--eEEeecc-cccccchhHHH--------------HhHHHHHHHH
Confidence            3345552 012379999999999999988876433  4555433 23555553332              2245677889


Q ss_pred             HHHHhcCCCcEEEEECCccchhHHHHHH----hcCEEEEecCccceeccccccCCCCChhhHHHHHHH-hC--------C
Q 026137           93 VAAMMDLPMPTVAAVNGHAAAAGFILAL----SHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREK-VG--------S  159 (243)
Q Consensus        93 ~~~l~~~~kp~Ia~v~G~~~G~G~~lal----~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~-~g--------~  159 (243)
                      +.++.++..|.|+.+-|.++|+|....+    ..|++++.++ +.++       +.-|.++...+.+. +-        .
T Consensus       131 ~~a~a~~~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~-a~~g-------vm~pe~aa~il~~~~~~~a~~~~~~~  202 (263)
T d1xnya2         131 IFAYAEATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPT-AQIA-------VMGAQGAVNILHRRTIADAGDDAEAT  202 (263)
T ss_dssp             HHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTT-CEEE-------SSCHHHHHHHHTHHHHHSCCTTCSSS
T ss_pred             HHHHHccCCCeEEEEecCccccceeccCCcccCCcEEEEcch-hhhh-------ccCHHHHHHHHHHHHHhhhccchHHH
Confidence            9999999999999999999998765533    3588888776 6554       42233333333221 10        0


Q ss_pred             HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhc
Q 026137          160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAG  207 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~  207 (243)
                      .....+.. .-+..++..+...|+||.|+++ .+..+...+..+.+..
T Consensus       203 ~~~~~~~~-~~~~~~p~~aA~~g~iD~VIdP-~dTR~~L~~~L~~l~~  248 (263)
T d1xnya2         203 RARLIQEY-EDALLNPYTAAERGYVDAVIMP-SDTRRHIVRGLRQLRT  248 (263)
T ss_dssp             HHHHHHHH-HHHHSSSHHHHHHTSSSEECCG-GGHHHHHHHHHHHHTT
T ss_pred             HHHHHHHH-HHHhcCHHHHHHcccCCcccCH-HHHHHHHHHHHHHHhc
Confidence            00000000 1122456788899999999998 6666665555555543

>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.87  E-value=0.00025  Score=58.47  Aligned_cols=87  Identities=13%  Similarity=0.054  Sum_probs=55.3

Q ss_pred             CCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHH--HHHHHhcCcCCCHH
Q 026137           99 LPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATA--RRDVLLRAKKIKGE  176 (243)
Q Consensus        99 ~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~--a~~l~l~g~~~~a~  176 (243)
                      -..|+|++|.|+|+|+|.-++..||++|+.++ +.+.       ++    |...+-..+| ...  ..+ =+.|    ++
T Consensus       239 ~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~-s~i~-------lt----Gp~~l~~~lG-~eVy~s~~-eLGG----~~  300 (333)
T d1uyra1         239 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEG-QPII-------LT----GAPAINKMLG-REVYTSNL-QLGG----TQ  300 (333)
T ss_dssp             HHSCEEEEESSCEETHHHHHHHHTCCEEEETT-CCEE-------SS----CHHHHHHHSS-SCCCSCTH-HHHS----HH
T ss_pred             CCCCEEEEEeCCccccceeecccccEEEEeCC-ceEE-------ee----CHHHHHHhcC-ccccCChh-HhCC----Hh
Confidence            46899999999999999999999999999988 5332       21    2223444444 211  011 1122    22


Q ss_pred             HHHHcCchhhhcCChhHHHHHHHHHHHHHhc
Q 026137          177 EALRMGLVEAAYDSEERVAEASMRLGKQLAG  207 (243)
Q Consensus       177 eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~  207 (243)
                      -..+-|.+|-++++++    ++.+.++++.+
T Consensus       301 i~~~nGv~h~~a~dd~----eai~~i~~~LS  327 (333)
T d1uyra1         301 IMYNNGVSHLTAVDDL----AGVEKIVEWMS  327 (333)
T ss_dssp             HHHHHTSSSEEESSHH----HHHHHHHHHHT
T ss_pred             HHhhCCCceEEeCCHH----HHHHHHHHHHh
Confidence            2346899999999843    34444555444

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=96.21  E-value=0.025  Score=45.60  Aligned_cols=158  Identities=9%  Similarity=0.089  Sum_probs=97.2

Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137           25 RLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV  104 (243)
Q Consensus        25 ~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I  104 (243)
                      +|+.+......+.++.++...-+  +|.|.-. ..|-.|.+-+.              ....+...+++.++.++.+|.|
T Consensus        98 ~l~~~~a~K~~rfi~lc~~~~iP--lv~l~D~-pGf~~g~~~E~--------------~g~~r~ga~~~~a~~~~~VP~i  160 (299)
T d1pixa3          98 KLYRQGLVKMNEFVTLCARDRLP--IVWIQDT-TGIDVGNDAEK--------------AELLGLGQSLIYSIQTSHIPQF  160 (299)
T ss_dssp             EECHHHHHHHHHHHHHHHHTTCC--EEEEECC-CEECCSHHHHH--------------TTHHHHHHHHHHHHHTCCCCEE
T ss_pred             ccCHHHHHHHHHHHHHHHHcCCe--EEEEEeC-CCcccchHHHh--------------hhHHHHHHHHHHHHHhhcceeE
Confidence            58899999999999988876433  4555322 22555543321              2245677888899999999999


Q ss_pred             EEECCccchhHHHHHHh----cCEEEEecCccceeccccccCCCCChhh-HHH-HHHHhCCHH------------HHHHH
Q 026137          105 AAVNGHAAAAGFILALS----HDYVVMRRDKGVLYMSEVDIGLTLPDYC-AAL-FREKVGSAT------------ARRDV  166 (243)
Q Consensus       105 a~v~G~~~G~G~~lal~----~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~-l~~~~g~~~------------~a~~l  166 (243)
                      ++|=|.++|+|....+.    .|++++.      ..|..++|+ +++-+ +.. +.+.+. ..            .-+++
T Consensus       161 svi~r~~~G~a~~am~g~~~~~~~~~~~------awP~aeigv-Mg~E~aa~vl~~~el~-~~~~~~~~~~e~~e~~~~~  232 (299)
T d1pixa3         161 EITLRKGTAAAHYVLGGPQGNDTNAFSI------GTAATEIAV-MNGETAATAMYSRRLA-KDRKAGKDLQPTIDKMNNL  232 (299)
T ss_dssp             EEECSEEETTHHHHTTCTTCTTTEEEEE------ECTTCEEES-SCHHHHHHHHHHHHHH-HHHHTTCCCHHHHHHHHHH
T ss_pred             EEEecccccccccccccCccCcccceec------CCCcccccc-ccchhhheeehhhhhh-hhhhhhhhhhHHHHHHHHH
Confidence            99999999988654432    2333321      234445666 44433 333 223322 10            00111


Q ss_pred             Hh-cCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcC
Q 026137          167 LL-RAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR  208 (243)
Q Consensus       167 ~l-~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~  208 (243)
                      +. .-+.-++..|.+.|+||.|+++ .+..+....+.+.+.++
T Consensus       233 ~~~~~~~~sp~~aAs~~~iD~IIDP-~dTR~~L~~~Le~~~~~  274 (299)
T d1pixa3         233 IQAFYTKSRPKVCAELGLVDEIVDM-NKIRGYVEAFTEAAYQN  274 (299)
T ss_dssp             HHHHHHTTSHHHHHHHTSSSEECCT-TTHHHHHHHHHHHHTTS
T ss_pred             HHHHHHhcCHHHHHHhCCcCeeECH-HHHHHHHHHHHHHHHhC
Confidence            11 1133678889999999999998 66766666666655544

>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.83  E-value=0.19  Score=41.67  Aligned_cols=79  Identities=16%  Similarity=0.195  Sum_probs=53.8

Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137           25 RLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV  104 (243)
Q Consensus        25 ~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I  104 (243)
                      .|.++-...-.+.+..+.+...+= +|++.- -..|+.|-+-+.              ....+....++.++.++.+|+|
T Consensus       109 v~~p~sA~K~A~~i~d~cd~~~lP-Li~l~D-~pGF~~G~~~E~--------------~gilr~GA~iv~A~~~~~vP~i  172 (404)
T d1uyra2         109 VWHPNSAFKTAQAINDFNNGEQLP-MMILAN-WRGFSGGQRDMF--------------NEVLKYGSFIVDALVDYKQPII  172 (404)
T ss_dssp             CBCHHHHHHHHHHHHHHHTTSCCC-EEECCC-CCCBCC--------------------CTHHHHHHHHHHHHHTCCSCEE
T ss_pred             ccCchHHHHHHHHHHHhhhccccc-eEEeec-CCcccCcHHHHH--------------HHHHHHHHHHHHHHHhcCCCEE
Confidence            577888888889998887655655 455543 356888774332              2245677889999999999999


Q ss_pred             EEE--CCccchhHHHHH
Q 026137          105 AAV--NGHAAAAGFILA  119 (243)
Q Consensus       105 a~v--~G~~~G~G~~la  119 (243)
                      ..|  .|...||++.++
T Consensus       173 ~vI~~~g~~~GGa~vv~  189 (404)
T d1uyra2         173 IYIPPTGELRGGSWVVV  189 (404)
T ss_dssp             EEECTTCEEEHHHHHTT
T ss_pred             EEEeCCcccchhhhhcc
Confidence            999  677777665443