Citrus Sinensis ID: 026143

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKTQLRPSWEGGEQQLGYNPQHAQTQGLFQPIECNPTLQIGYNPSCSDQMTATSHAQQVSGFIPGWML
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHHHHHHHHccccEEEEEEccccccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccEEEEEccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQkcsygavevnkpakELESSYREYLKLKTRFESLQRTQRNllgedlgplnsKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDeinaktqlrpsweggeqqlgynpqhaqtqglfqpiecnptlqigynpscsdqmtatshaqqvsgfipgwml
Flexible Loop (DISEMBL)
mgrgrvelkrienkinrqvtfakrrngLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSygavevnkpakelESSYREYLKLKTRFESLQRTqrnllgedlgplnSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKTQLRPSWEGGEQQLGYNPQHAQTQGLFQPIECNPTLQIGYNPSCSDQMTATSHAQQVSGFIPGWML
Low Complexity Region (SEG)
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPLNSKeleqlerqlesslKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKTQLRPSWEGGEQQLGYNPQHAQTQGLFQPIECNPTLQIGYNPSCSDQMTATSHAQQVSGFIPGWML
Disordered region (IsUnstruct)
*************KINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAVEVN*********YREYLKLK***********************************************************QLLLDTNRALTIKLDEINAK**********************TQGLFQPIECNPTLQIGYN*************************
Disordered Region (DISOPRED)
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQ********************REYLKLKTRFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKL**************************************NPTLQIG********************FIPGWML
Disordered Region (DISEMBL)
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKTQLRPSWEGGEQQLGYNPQHAQTQGLFQPIECNPTLQIGYNPSCSDQMTATSHAQQVSGFIPGWML
Disordered Region (DISPRO)
*****VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEIN**************************GLFQPIECNPTLQIGYNPS**********************L
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPLNSKExxxxxxxxxxxxxxxxxxxxxYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKTQLRPSWEGGEQQLGYNPQHAQTQGLFQPIECNPTLQIGYNPSCSDQMTATSHAQQVSGFIPGWML
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	243	2.2.26 [Sep-21-2011]
P29384	250	Developmental protein SEP	yes	no	1.0	0.972	0.74	1e-101
P29382	251	Developmental protein SEP	no	no	1.0	0.968	0.776	1e-100
Q39685	233	MADS-box protein CMB1 OS=	N/A	no	0.950	0.991	0.665	5e-87
Q03489	241	Agamous-like MADS-box pro	N/A	no	0.971	0.979	0.678	2e-84
Q38694	250	Agamous-like MADS-box pro	N/A	no	0.983	0.956	0.632	5e-81
O65874	247	MADS-box transcription fa	N/A	no	0.967	0.951	0.656	6e-81
O22456	251	Developmental protein SEP	no	no	0.979	0.948	0.633	3e-79
O04067	254	Agamous-like MADS-box pro	N/A	no	0.983	0.940	0.62	2e-78
Q9SAR1	248	MADS-box transcription fa	yes	no	0.954	0.935	0.626	3e-76
Q0J466	249	MADS-box transcription fa	no	no	0.975	0.951	0.588	1e-73

>sp|P29384|SEP2_ARATH Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1

 Score =  369 bits (947), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/250 (74%), Positives = 213/250 (85%), Gaps = 7/250 (2%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV+LI+FSNRGKLYEFCS+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCST 60

Query: 61  SSMLKTLERYQKCSYGAVEV-NKPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPL 119
           S+MLKTLERYQKCSYG++EV NKPAKELE+SYREYLKLK R+E+LQR QRNLLGEDLGPL
Sbjct: 61  SNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query: 120 NSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINA--K 177
           NSKELEQLERQL+ SLK VR  KTQYMLDQLSDLQ KE +LLD NRAL++KL+++     
Sbjct: 121 NSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKLEDMIGVRH 180

Query: 178 TQLRPSWEGGEQQ-LGYNPQHAQTQGLFQPIECNPTLQIGY-NPSCSDQMTAT--SHAQQ 233
             +   WEGG+QQ + Y    A +QGL+Q +EC+PTLQIGY +P CS+QM  T    +QQ
Sbjct: 181 HHIGGGWEGGDQQNIAYGHPQAHSQGLYQSLECDPTLQIGYSHPVCSEQMAVTVQGQSQQ 240

Query: 234 VSGFIPGWML 243
            +G+IPGWML
Sbjct: 241 GNGYIPGWML 250

Probable transcription factor. Functions with SEPALLATA1/AGL2 and SEPALLATA3/AGL9 to ensure proper development of petals, stamens and carpels and to prevent the indeterminate growth of the flower meristem. Forms an heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.
Arabidopsis thaliana (taxid: 3702)

>sp|P29382|SEP1_ARATH Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2

 Score =  362 bits (930), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/251 (77%), Positives = 219/251 (87%), Gaps = 8/251 (3%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCSYGAVEVN-KPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPL 119
           S+MLKTL+RYQKCSYG++EVN KPAKELE+SYREYLKLK R+E+LQR QRNLLGEDLGPL
Sbjct: 61  SNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query: 120 NSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEI----N 175
           NSKELEQLERQL+ SLK VRS KTQYMLDQLSDLQNKEQ+LL+TNRAL +KLD++    +
Sbjct: 121 NSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMKLDDMIGVRS 180

Query: 176 AKTQLRPSWEGGEQQLGYNPQHAQTQGLFQPIECNPTLQIGY-NPSCSDQMTATSHAQQV 234
                   WEGGEQ + Y    AQ+QGL+QP+ECNPTLQ+GY NP CS+Q+TAT+ AQ  
Sbjct: 181 HHMGGGGGWEGGEQNVTYAHHQAQSQGLYQPLECNPTLQMGYDNPVCSEQITATTQAQAQ 240

Query: 235 --SGFIPGWML 243
             +G+IPGWML
Sbjct: 241 QGNGYIPGWML 251

Probable transcription factor. Functions with SEPALLATA2/AGL4 and SEPALLATA3/AGL9 to ensure proper development of petals, stamens and carpels, and to prevent the indeterminate growth of the flower meristem. Forms an heterodimer via the K-box domain with AGAMOUS, that could be involved in genes regulation during floral meristem development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39685|CMB1_DIACA MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1

 Score =  320 bits (821), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 163/245 (66%), Positives = 194/245 (79%), Gaps = 14/245 (5%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALI+FSNRGKLYEFCS+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCST 60

Query: 61  SSMLKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPLN 120
           S M KTLERYQ+CSYG++E ++P+KE ESSY+EYLKLK + + LQR+ RNLLGEDLG L+
Sbjct: 61  SCMNKTLERYQRCSYGSLETSQPSKETESSYQEYLKLKAKVDVLQRSHRNLLGEDLGELS 120

Query: 121 SKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKTQL 180
           +KELEQLE QL+ SL+ +RS KTQ+MLDQL+DLQ KE++L ++NRAL  KL+E  A    
Sbjct: 121 TKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTKLEESCAS--F 178

Query: 181 RPSWEGGEQQLGYNPQHAQTQGLFQ--PIECNPTLQIGYNPSCSDQMTATSHAQQVSGFI 238
           RP+W+   +Q G         G F+  P+ CN  LQIGYN +  DQM AT+ AQ V GF 
Sbjct: 179 RPNWDV--RQPG--------DGFFEPLPLPCNNNLQIGYNEATQDQMNATTSAQNVHGFA 228

Query: 239 PGWML 243
            GWML
Sbjct: 229 QGWML 233

Dianthus caryophyllus (taxid: 3570)

>sp|Q03489|AGL9_PETHY Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2

 Score =  312 bits (799), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 167/246 (67%), Positives = 188/246 (76%), Gaps = 10/246 (4%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCSYGAVEVNKPAKE-LE-SSYREYLKLKTRFESLQRTQRNLLGEDLGP 118
           SSMLKTLERYQKC+YGA E N   +E LE SS +EYLKLK R+E+LQR+QRNLLGEDLGP
Sbjct: 61  SSMLKTLERYQKCNYGAPETNISTREALEISSQQEYLKLKARYEALQRSQRNLLGEDLGP 120

Query: 119 LNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKT 178
           LNSKELE LERQL+ SLK +RST+TQ MLDQL DLQ KE  L + NR L  +L E    +
Sbjct: 121 LNSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQRLME---GS 177

Query: 179 QLRPSWEGGEQQLGYNPQHAQTQ--GLFQPIECNPTLQIGYNPSCSDQMTATSHAQQVSG 236
            L   W+   Q +GY  Q  QTQ  G F P+EC PTLQIGY    +D +T       V+ 
Sbjct: 178 TLNLQWQQNAQDVGYGRQATQTQGDGFFHPLECEPTLQIGYQ---NDPITVGGAGPSVNN 234

Query: 237 FIPGWM 242
           ++ GW+
Sbjct: 235 YMAGWL 240

Probable transcription factor.

Petunia hybrida (taxid: 4102)

>sp|Q38694|AGL9_ARADE Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1

 Score =  300 bits (769), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 155/245 (63%), Positives = 189/245 (77%), Gaps = 6/245 (2%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELK IENKINRQVTFAKRR  LLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKMIENKINRQVTFAKRRKRLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPLN 120
           +SMLKTLE+YQKC++G+ E    ++E +SS +EYLKLK R E+LQR+QRNLLGEDLGPL 
Sbjct: 61  TSMLKTLEKYQKCNFGSPESTIISRETQSSQQEYLKLKNRVEALQRSQRNLLGEDLGPLG 120

Query: 121 SKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKTQL 180
           SKELEQLERQL+SSL+ +RST+TQ+MLDQL+DLQ +EQ+L + N+ L  + +E +   Q 
Sbjct: 121 SKELEQLERQLDSSLRQIRSTRTQFMLDQLADLQRREQMLCEANKTLKRRFEESSQANQQ 180

Query: 181 RPSWEGGEQQLGYNPQHAQTQG--LFQPIECNPTLQIGYNPSCSDQMTATSHAQQVSGFI 238
           +         +GY  Q AQ  G   + P+EC PTLQIGY+   SD   AT+ A  V+ ++
Sbjct: 181 QVWDPSNTHAVGYGRQPAQHHGEAFYHPLECEPTLQIGYH---SDITMATATASTVNNYM 237

Query: 239 -PGWM 242
            PGW+
Sbjct: 238 PPGWL 242

Probable transcription factor active in inflorescence development and floral organogenesis.

Aranda deborah (taxid: 29714)

>sp|O65874|MTF1_PEA MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1

 Score =  300 bits (768), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 166/253 (65%), Positives = 196/253 (77%), Gaps = 18/253 (7%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKR+ENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALI+FSNRGKLYEFCS+
Sbjct: 1   MGRGRVELKRVENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCST 60

Query: 61  SSMLKTLERYQKCSYGAVEVNKPAKE---LE-SSYREYLKLKTRFESLQRTQRNLLGEDL 116
           SSMLKTLERYQKC+YGA E N  +KE   LE SS +EYLKLK R+ESLQR+QRNL+GEDL
Sbjct: 61  SSMLKTLERYQKCNYGAPEGNVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDL 120

Query: 117 GPLNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLD--EI 174
           GPL+SK+LE LERQL+SSLK +RST+TQ+MLDQL DLQ KE LL + NRAL  +++  +I
Sbjct: 121 GPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQRMEGYQI 180

Query: 175 NAKTQLRPSWEGGEQQLGYNPQH-AQTQG--LF--QPIECNPTLQIGYNPSCSDQMTATS 229
           N+  QL  S E     +GY   H   T G  LF  QPIEC PTLQIGY+    D  +  +
Sbjct: 181 NS-LQLNLSAE----DMGYGRHHQGHTHGDELFQVQPIECEPTLQIGYHQ--GDPGSVVT 233

Query: 230 HAQQVSGFIPGWM 242
               ++ ++ GW+
Sbjct: 234 AGPSMNNYMGGWL 246

Probable transcription factor.

Pisum sativum (taxid: 3888)

>sp|O22456|SEP3_ARATH Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1

 Score =  295 bits (754), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 157/248 (63%), Positives = 190/248 (76%), Gaps = 10/248 (4%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCSYGAVEVNKPAKELE----SSYREYLKLKTRFESLQRTQRNLLGEDL 116
           SSML+TLERYQKC+YGA E N P++E      SS +EYLKLK R+++LQRTQRNLLGEDL
Sbjct: 61  SSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDL 120

Query: 117 GPLNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKL-DEIN 175
           GPL++KELE LERQL+SSLK +R+ +TQ+MLDQL+DLQ+KE++L +TN+ L ++L D   
Sbjct: 121 GPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADGYQ 180

Query: 176 AKTQLRPSWEGGEQQ-LGYNPQHAQTQGLFQPIECNPTLQIGYNPSCSDQMTATSHAQQV 234
              QL P+ E  +     ++ Q   +Q  FQP+EC P LQIGY      Q         V
Sbjct: 181 MPLQLNPNQEEVDHYGRHHHQQQQHSQAFFQPLECEPILQIGY----QGQQDGMGAGPSV 236

Query: 235 SGFIPGWM 242
           + ++ GW+
Sbjct: 237 NNYMLGWL 244

Probable transcription factor active in inflorescence development and floral organogenesis. Functions with SEPALLATA1/AGL2 and SEPALLATA2/AGL4 to ensure proper development of petals, stamens and carpels and to prevent the indeterminate growth of the flower meristem. Interacts with APETALA1, AGAMOUS or APETALA3/PISTILLATA to form complexes, that could be involved in genes regulation during floral meristem development.

Arabidopsis thaliana (taxid: 3702)

>sp|O04067|AGL9_SINAL Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1

 Score =  292 bits (747), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 155/250 (62%), Positives = 187/250 (74%), Gaps = 11/250 (4%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCSYGAVEVNKPAKEL----ESSYREYLKLKTRFESLQRTQRNLLGEDL 116
           SSM++TLERYQKC+YG  E N P++E      SS +EYLKLK R+++LQRTQRNLLGEDL
Sbjct: 61  SSMIRTLERYQKCNYGPPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDL 120

Query: 117 GPLNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKL-DEIN 175
           GPL++KELE LERQL+SSLK +R+ +TQ+MLDQL+DLQ+KE++L +TN+ L ++L D   
Sbjct: 121 GPLSTKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLNETNKTLRLRLADGYQ 180

Query: 176 AKTQLRPSWEGGEQQLGYNPQHAQT---QGLFQPIECNPTLQIGYNPSCSDQMTATSHAQ 232
              QL P+ E      G + Q  Q       FQP+EC P LQ+GY       M A     
Sbjct: 181 MPLQLNPNQEDHHVDYGRHDQQQQQNSHHAFFQPLECEPILQMGYQGQQDHGMEAGPSE- 239

Query: 233 QVSGFIPGWM 242
             + ++ GW+
Sbjct: 240 --NNYMLGWL 247

Probable transcription factor active in inflorescence development and floral organogenesis.

Sinapis alba (taxid: 3728)

>sp|Q9SAR1|MADS8_ORYSJ MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1

 Score =  285 bits (728), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 161/257 (62%), Positives = 186/257 (72%), Gaps = 25/257 (9%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSG 60

Query: 61  SSMLKTLERYQKCSYGAVEV---NKPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLG 117
            SM +TLERYQK SYG  +    NK  + ++SS  EYLKLK R E+LQRTQRNLLGEDLG
Sbjct: 61  QSMTRTLERYQKFSYGGPDTAIQNKENELVQSSRNEYLKLKARVENLQRTQRNLLGEDLG 120

Query: 118 PLNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAK 177
            L  KELEQLE+QL+SSL+H+RST+TQ+MLDQL+DLQ +EQ+L + N+ L  KL+E N  
Sbjct: 121 TLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRKLEESN-- 178

Query: 178 TQLRPS-WEGGEQQLGYNPQ--HAQTQ-------GLFQPIE--CNPTLQIGYNPSCSDQM 225
            QL    WE G   LGY  Q  HA  Q       G F  +E    PTLQIG+ P   +QM
Sbjct: 179 -QLHGQVWEHGATLLGYERQSPHAVQQVPPHGGNGFFHSLEAAAEPTLQIGFTP---EQM 234

Query: 226 TATSHAQQVSGFIPGWM 242
             +     V+ F+P W+
Sbjct: 235 NNSC----VTAFMPTWL 247

Probable transcription factor. May be involved in the control of flowering time.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0J466|MADS7_ORYSJ MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2

 Score =  276 bits (705), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 149/253 (58%), Positives = 184/253 (72%), Gaps = 16/253 (6%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60

Query: 61  SSMLKTLERYQKCSYGAVEV---NKPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLG 117
            SM KTLE+YQKCSY   E    N+ +++L++S  EYLKLK R E+LQRTQRNLLGEDL 
Sbjct: 61  QSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLD 120

Query: 118 PLNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAK 177
            L  KELE LE+QL+SSLKHVR+T+T++++DQL++LQ KEQ++ + NR L  KL+E N  
Sbjct: 121 SLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESN-H 179

Query: 178 TQLRPSWEGGEQQLGYNPQHAQTQ------GLFQPIEC--NPTLQIGYNPSCSDQMTATS 229
            + +  WE G   +GY  Q    Q      G F P++    PTLQIGY     + M +  
Sbjct: 180 VRGQQVWEQGCNLIGYERQPEVQQPLHGGNGFFHPLDAAGEPTLQIGYPAEHHEAMNSAC 239

Query: 230 HAQQVSGFIPGWM 242
               ++ ++P W+
Sbjct: 240 ----MNTYMPPWL 248

Probable transcription factor. May be involved in the control of flowering time.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
163929884	243	SEPALLATA1 homolog [Citrus unshiu]	1.0	1.0	1.0	1e-139
187942344	245	MADS1 [Carica papaya]	1.0	0.991	0.877	1e-122
449476393	246	PREDICTED: developmental protein SEPALLA	1.0	0.987	0.841	1e-119
449438727	246	PREDICTED: developmental protein SEPALLA	1.0	0.987	0.837	1e-118
110617810	245	MADS4 [Populus tomentosa]	1.0	0.991	0.844	1e-117
390979682	244	transcription factor MADS4 [Prunus avium	1.0	0.995	0.840	1e-117
224120668	244	MIKC mads-box transcription factor SEPAL	1.0	0.995	0.844	1e-116
126842927	245	transcription factor MADS7 [Prunus persi	1.0	0.991	0.836	1e-116
28372802	245	transcription factor MAGL4 [Populus trem	1.0	0.991	0.840	1e-116
298204456	243	unnamed protein product [Vitis vinifera]	1.0	1.0	0.831	1e-115

>gi|163929884|dbj|BAF95941.1| SEPALLATA1 homolog [Citrus unshiu]

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 243/243 (100%), Positives = 243/243 (100%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPLN 120
           SSMLKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPLN
Sbjct: 61  SSMLKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPLN 120

Query: 121 SKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKTQL 180
           SKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKTQL
Sbjct: 121 SKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKTQL 180

Query: 181 RPSWEGGEQQLGYNPQHAQTQGLFQPIECNPTLQIGYNPSCSDQMTATSHAQQVSGFIPG 240
           RPSWEGGEQQLGYNPQHAQTQGLFQPIECNPTLQIGYNPSCSDQMTATSHAQQVSGFIPG
Sbjct: 181 RPSWEGGEQQLGYNPQHAQTQGLFQPIECNPTLQIGYNPSCSDQMTATSHAQQVSGFIPG 240

Query: 241 WML 243
           WML
Sbjct: 241 WML 243

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|187942344|gb|ACD39982.1| MADS1 [Carica papaya]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/245 (87%), Positives = 229/245 (93%), Gaps = 2/245 (0%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPLN 120
           SSMLKTL+RYQKCSYGAVEV+KPAKELESSYREYLKLKTRFE+LQRTQRNLLGEDLGPLN
Sbjct: 61  SSMLKTLDRYQKCSYGAVEVSKPAKELESSYREYLKLKTRFEALQRTQRNLLGEDLGPLN 120

Query: 121 SKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKTQL 180
           +KELEQLERQLESSLKHVRSTKTQYMLDQL+DLQNKE +LL+ NRALTIKLDEI+A+  L
Sbjct: 121 TKELEQLERQLESSLKHVRSTKTQYMLDQLTDLQNKEHMLLEANRALTIKLDEISARNHL 180

Query: 181 RPSWEGGEQQLGYNPQHAQTQGLFQPIECNPTLQIGYNPSCSDQMT--ATSHAQQVSGFI 238
           R +WEG EQ + Y  QHAQ+QGLFQP+ECNPTLQIGYNP  SDQMT  ATS  QQV+GFI
Sbjct: 181 RVAWEGSEQNVSYGHQHAQSQGLFQPLECNPTLQIGYNPVGSDQMTAAATSQGQQVNGFI 240

Query: 239 PGWML 243
           PGWML
Sbjct: 241 PGWML 245

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476393|ref|XP_004154725.1| PREDICTED: developmental protein SEPALLATA 2-like [Cucumis sativus]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/246 (84%), Positives = 230/246 (93%), Gaps = 3/246 (1%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60

Query: 61  SSMLKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPLN 120
           S+MLKTLERYQKCSYGAVEV KPAKELESSYREYLKLK+RFESLQRTQRNLLGEDLGPLN
Sbjct: 61  SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLGPLN 120

Query: 121 SKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKTQL 180
           SKELEQLERQLESSLK VRSTKTQYMLDQLSDLQNKEQ+L++TNRAL IKL+EI+++  +
Sbjct: 121 SKELEQLERQLESSLKQVRSTKTQYMLDQLSDLQNKEQMLIETNRALQIKLEEISSRNNI 180

Query: 181 RPSWEGGEQQLGYNPQHAQTQGLFQPIECNPTLQIGYNPSCSDQMTAT---SHAQQVSGF 237
           R +W+GG+Q + Y PQ+AQTQG FQP+ECNPTLQIGY  + SDQ+T+T   +HAQQV+GF
Sbjct: 181 RLTWDGGDQSMSYGPQNAQTQGFFQPLECNPTLQIGYTSAVSDQITSTTTPTHAQQVNGF 240

Query: 238 IPGWML 243
           +PGWML
Sbjct: 241 LPGWML 246

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438727|ref|XP_004137139.1| PREDICTED: developmental protein SEPALLATA 2-like [Cucumis sativus] gi|6683777|gb|AAF23363.1|AF135962_1 CAGL2 [Cucumis sativus]

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/246 (83%), Positives = 229/246 (93%), Gaps = 3/246 (1%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60

Query: 61  SSMLKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPLN 120
           S+MLKTLERYQKCSYGAVEV KPAKELESSYREYLKLK+RFESLQRTQRNLLGEDLGPLN
Sbjct: 61  SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLGPLN 120

Query: 121 SKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKTQL 180
           SKELEQLERQL SSLK VRSTKTQYMLDQLSDLQNKEQ+L++TNRAL IKL+EI+++  +
Sbjct: 121 SKELEQLERQLVSSLKQVRSTKTQYMLDQLSDLQNKEQMLIETNRALQIKLEEISSRNNI 180

Query: 181 RPSWEGGEQQLGYNPQHAQTQGLFQPIECNPTLQIGYNPSCSDQMTAT---SHAQQVSGF 237
           R +W+GG+Q + Y PQ+AQTQG FQP+ECNPTLQIGY  + SDQ+T+T   +HAQQV+GF
Sbjct: 181 RLTWDGGDQSMSYGPQNAQTQGFFQPLECNPTLQIGYTSAVSDQITSTTTPTHAQQVNGF 240

Query: 238 IPGWML 243
           +PGWML
Sbjct: 241 LPGWML 246

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110617810|gb|ABG78619.1| MADS4 [Populus tomentosa]

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 207/245 (84%), Positives = 225/245 (91%), Gaps = 2/245 (0%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60

Query: 61  SSMLKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPLN 120
           S+MLKTLERYQKCSYGA EVNKPAKELE+SYREYLK+K RFE+LQRTQRNLLGEDLGPLN
Sbjct: 61  SNMLKTLERYQKCSYGAEEVNKPAKELENSYREYLKVKARFEALQRTQRNLLGEDLGPLN 120

Query: 121 SKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKTQL 180
           +K+LEQLERQLESSL  VRSTKTQYMLDQL+DLQNKE LLL+ NR LT+KLDEI+A+  L
Sbjct: 121 TKDLEQLERQLESSLNQVRSTKTQYMLDQLADLQNKEHLLLEANRGLTMKLDEISARNSL 180

Query: 181 RPSWEGGEQQ-LGYNPQHAQTQGLFQPIECNPTLQIGYNPSCSDQMTATSHA-QQVSGFI 238
           RPSWEG +QQ + Y  QHAQ+QGLFQ +ECNPTLQIGYNP  SDQM+ T+HA QQV GFI
Sbjct: 181 RPSWEGDDQQNMSYGHQHAQSQGLFQALECNPTLQIGYNPVGSDQMSCTTHATQQVHGFI 240

Query: 239 PGWML 243
           PGWML
Sbjct: 241 PGWML 245

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|390979682|gb|AFM30904.1| transcription factor MADS4 [Prunus avium]

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/244 (84%), Positives = 226/244 (92%), Gaps = 1/244 (0%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELS+LCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPLN 120
           SS+LKTLERYQKCSYG VEVNKPAKELESSYREYLKLK RFESLQRTQRNLLGEDLGPLN
Sbjct: 61  SSILKTLERYQKCSYGQVEVNKPAKELESSYREYLKLKGRFESLQRTQRNLLGEDLGPLN 120

Query: 121 SKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKTQL 180
           +KELEQLERQLESSLK VRSTKTQYMLDQLSDLQNKEQ+L++ NR LT+KLD+I+++ Q+
Sbjct: 121 TKELEQLERQLESSLKQVRSTKTQYMLDQLSDLQNKEQMLIEANRDLTLKLDDISSRNQI 180

Query: 181 RPSWEGGEQ-QLGYNPQHAQTQGLFQPIECNPTLQIGYNPSCSDQMTATSHAQQVSGFIP 239
           R SWEGG Q  + Y  QHAQ+QG FQP++CNP LQIGY+   S+QM+AT+HAQQV+GFIP
Sbjct: 181 RQSWEGGNQGGMAYGTQHAQSQGFFQPLDCNPPLQIGYSNVGSEQMSATTHAQQVNGFIP 240

Query: 240 GWML 243
           GWML
Sbjct: 241 GWML 244

Source: Prunus avium

Species: Prunus avium

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120668|ref|XP_002330922.1| MIKC mads-box transcription factor SEPALLATA1/2 [Populus trichocarpa] gi|222873116|gb|EEF10247.1| MIKC mads-box transcription factor SEPALLATA1/2 [Populus trichocarpa]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/244 (84%), Positives = 223/244 (91%), Gaps = 1/244 (0%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLC+AEVALIIFSNRGKL+EFCS+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCEAEVALIIFSNRGKLFEFCST 60

Query: 61  SSMLKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPLN 120
           S+MLKTLERYQKCSYGA EVNKPAKELESSYREYLK+K +FE+LQRTQRNLLGEDLGPLN
Sbjct: 61  SNMLKTLERYQKCSYGAEEVNKPAKELESSYREYLKVKAKFETLQRTQRNLLGEDLGPLN 120

Query: 121 SKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKTQL 180
           +KELEQLER LESSLK VRSTKTQYMLDQL DLQNKE +LL+ NRALTIKLDEI+A+  L
Sbjct: 121 TKELEQLERHLESSLKQVRSTKTQYMLDQLGDLQNKEHMLLEANRALTIKLDEISARNNL 180

Query: 181 RPSWEGGEQQ-LGYNPQHAQTQGLFQPIECNPTLQIGYNPSCSDQMTATSHAQQVSGFIP 239
           RPSWEG +QQ + Y  QHAQ+QGLFQ +ECNPTLQIGYN   SDQ+TAT  AQQV GFIP
Sbjct: 181 RPSWEGDDQQSMSYGHQHAQSQGLFQHLECNPTLQIGYNSVGSDQITATHAAQQVHGFIP 240

Query: 240 GWML 243
           GWML
Sbjct: 241 GWML 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|126842927|gb|ABO27622.1| transcription factor MADS7 [Prunus persica]

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/245 (83%), Positives = 227/245 (92%), Gaps = 2/245 (0%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELS+LCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SS-MLKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPL 119
           SS +LKTLERYQKCSYG VEVNKPAKELESSYREYLKLK RFESLQRTQRNLLGEDLGPL
Sbjct: 61  SSSILKTLERYQKCSYGQVEVNKPAKELESSYREYLKLKGRFESLQRTQRNLLGEDLGPL 120

Query: 120 NSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKTQ 179
           N+KELEQLERQLESSLK VRSTKTQYMLDQLSDLQNKEQ+L++ NR L++KLD+I+++ Q
Sbjct: 121 NTKELEQLERQLESSLKQVRSTKTQYMLDQLSDLQNKEQMLIEANRDLSLKLDDISSRNQ 180

Query: 180 LRPSWEGGEQ-QLGYNPQHAQTQGLFQPIECNPTLQIGYNPSCSDQMTATSHAQQVSGFI 238
           +R SWEGG Q  + Y  QHAQ+QG FQP++CNPTLQIGY+   S+QM+AT+HAQQV+GFI
Sbjct: 181 IRQSWEGGNQGGMAYGSQHAQSQGFFQPLDCNPTLQIGYSNVGSEQMSATTHAQQVNGFI 240

Query: 239 PGWML 243
           PGWML
Sbjct: 241 PGWML 245

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28372802|gb|AAL08423.2|AF185574_1 transcription factor MAGL4 [Populus tremuloides]

 Score =  422 bits (1084), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/245 (84%), Positives = 223/245 (91%), Gaps = 2/245 (0%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60

Query: 61  SSMLKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPLN 120
           S+MLKTLERYQKCSYGA EVNKPAKELE+SYREYLK+K RFE LQRTQRNLLGEDLGPLN
Sbjct: 61  SNMLKTLERYQKCSYGAEEVNKPAKELENSYREYLKVKARFEGLQRTQRNLLGEDLGPLN 120

Query: 121 SKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKTQL 180
           +K+LEQLERQLESSL  VRSTKTQYMLDQL+DLQNKE LL + NR LTIKLDEI+A+  L
Sbjct: 121 TKDLEQLERQLESSLNQVRSTKTQYMLDQLADLQNKEHLLQEANRGLTIKLDEISARNSL 180

Query: 181 RPSWEGGEQQ-LGYNPQHAQTQGLFQPIECNPTLQIGYNPSCSDQMTATSHA-QQVSGFI 238
           RPSWEG +QQ + Y  QHAQ+QGLFQ +ECNPTLQIGYNP  SDQ++A +HA QQV GFI
Sbjct: 181 RPSWEGDDQQNMSYGHQHAQSQGLFQALECNPTLQIGYNPVGSDQVSAITHATQQVHGFI 240

Query: 239 PGWML 243
           PGWML
Sbjct: 241 PGWML 245

Source: Populus tremuloides

Species: Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204456|emb|CBI16936.3| unnamed protein product [Vitis vinifera]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/243 (83%), Positives = 225/243 (92%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS RGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPLN 120
           SSMLKTLERYQKCSYGAVEV++P+KELESSYREYLKLK++FESLQRTQRNLLGEDLGPLN
Sbjct: 61  SSMLKTLERYQKCSYGAVEVSRPSKELESSYREYLKLKSKFESLQRTQRNLLGEDLGPLN 120

Query: 121 SKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKTQL 180
           +KELEQLERQLE+SLK VRSTKTQ+MLDQLSDLQNKEQ+L+++N+ALT KLDEI+ K  L
Sbjct: 121 TKELEQLERQLETSLKQVRSTKTQFMLDQLSDLQNKEQVLVESNKALTRKLDEISVKNHL 180

Query: 181 RPSWEGGEQQLGYNPQHAQTQGLFQPIECNPTLQIGYNPSCSDQMTATSHAQQVSGFIPG 240
           + SWE GEQ + Y  Q AQ+QG FQP+ECNPTLQIGYNP+ S Q++A S+AQ V+GFIPG
Sbjct: 181 QLSWESGEQSMPYGHQQAQSQGFFQPLECNPTLQIGYNPAGSSQLSAPSNAQNVNGFIPG 240

Query: 241 WML 243
           WML
Sbjct: 241 WML 243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
TAIR|locus:2076522	250	SEP2 "SEPALLATA 2" [Arabidopsi	1.0	0.972	0.7	7.7e-87
TAIR|locus:2143261	262	SEP1 "SEPALLATA1" [Arabidopsis	0.888	0.824	0.755	1.7e-82
UNIPROTKB|Q9ATF2	246	FBP5 "MADS-box transcription f	1.0	0.987	0.650	1.4e-80
UNIPROTKB|Q6EUV7	247	grcd2 "MADS domain protein" [G	1.0	0.983	0.603	1e-75
UNIPROTKB|Q9ATF1	245	FBP9 "MADS-box transcription f	1.0	0.991	0.612	3.1e-74
UNIPROTKB|D2T2F8	249	grcd4 "GRCD4 protein" [Gerbera	1.0	0.975	0.602	2.2e-73
UNIPROTKB|Q03489	241	FBP2 "Agamous-like MADS-box pr	0.971	0.979	0.638	3.6e-73
UNIPROTKB|O65874	247	MTF1 "MADS-box transcription f	0.967	0.951	0.616	5.5e-70
TAIR|locus:2032372	251	SEP3 "SEPALLATA3" [Arabidopsis	0.979	0.948	0.604	5.5e-70
UNIPROTKB|D2T2F9	252	grcd5 "GRCD5 protein" [Gerbera	0.983	0.948	0.596	2.4e-67

TAIR|locus:2076522 SEP2 "SEPALLATA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 868 (310.6 bits), Expect = 7.7e-87, P = 7.7e-87
 Identities = 175/250 (70%), Positives = 202/250 (80%)

Query:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
             MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV+LI+FSNRGKLYEFCS+
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCST 60

Query:    61 SSMLKTLERYQKCSYGAVEVN-KPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPL 119
             S+MLKTLERYQKCSYG++EVN KPAKELE+SYREYLKLK R+E+LQR QRNLLGEDLGPL
Sbjct:    61 SNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query:   120 NSKXXXXXXXXXXXXXKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDE-INAKT 178
             NSK             K VR  KTQYMLDQLSDLQ KE +LLD NRAL++KL++ I  + 
Sbjct:   121 NSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKLEDMIGVRH 180

Query:   179 Q-LRPSWEGGEQQ-LGYNPQHAQTQGLFQPIECNPTLQIGYN-PSCSDQMTAT--SHAQQ 233
               +   WEGG+QQ + Y    A +QGL+Q +EC+PTLQIGY+ P CS+QM  T    +QQ
Sbjct:   181 HHIGGGWEGGDQQNIAYGHPQAHSQGLYQSLECDPTLQIGYSHPVCSEQMAVTVQGQSQQ 240

Query:   234 VSGFIPGWML 243
              +G+IPGWML
Sbjct:   241 GNGYIPGWML 250

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009908 "flower development" evidence=NAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048481 "ovule development" evidence=RCA;IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2143261 SEP1 "SEPALLATA1" [Arabidopsis thaliana (taxid:3702)]

 Score = 827 (296.2 bits), Expect = 1.7e-82, P = 1.7e-82
 Identities = 167/221 (75%), Positives = 185/221 (83%)

Query:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
             MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query:    61 SSMLKTLERYQKCSYGAVEVN-KPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPL 119
             S+MLKTL+RYQKCSYG++EVN KPAKELE+SYREYLKLK R+E+LQR QRNLLGEDLGPL
Sbjct:    61 SNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query:   120 NSKXXXXXXXXXXXXXKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDE-INAKT 178
             NSK             K VRS KTQYMLDQLSDLQNKEQ+LL+TNRAL +KLD+ I  ++
Sbjct:   121 NSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMKLDDMIGVRS 180

Query:   179 QLRPS---WEGGEQQLGYNPQHAQTQGLFQPIECNPTLQIG 216
                     WEGGEQ + Y    AQ+QGL+QP+ECNPTLQ+G
Sbjct:   181 HHMGGGGGWEGGEQNVTYAHHQAQSQGLYQPLECNPTLQMG 221

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048481 "ovule development" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0009908 "flower development" evidence=IDA

UNIPROTKB|Q9ATF2 FBP5 "MADS-box transcription factor FBP5" [Petunia x hybrida (taxid:4102)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 160/246 (65%), Positives = 191/246 (77%)

Query:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
             MGRGRVELK+IENKINRQVTFAKRRNGLLKKAYELSVLC+AEVALIIFSNRGKLYEF S+
Sbjct:     1 MGRGRVELKKIENKINRQVTFAKRRNGLLKKAYELSVLCEAEVALIIFSNRGKLYEFSST 60

Query:    61 SSMLKTLERYQKCSYGAVEVN-KPAKEL--ESSYREYLKLKTRFESLQRTQRNLLGEDLG 117
             S+M+KTL+RYQKCSYG +EVN +  K+   E  YREYLKLK ++ESLQR QR LLG++LG
Sbjct:    61 SNMVKTLDRYQKCSYGTLEVNHRSVKDNNEERIYREYLKLKAKYESLQRYQRQLLGDELG 120

Query:   118 PLNSKXXXXXXXXXXXXXKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAK 177
             PLN               K ++ST+TQ MLDQLSDLQ KE+L ++ N+ L  KL++I A+
Sbjct:   121 PLNIDELEHLELQLDSSLKLIKSTRTQLMLDQLSDLQTKEKLWVEANKVLERKLEQIYAE 180

Query:   178 TQLRPSWEGGEQQLGYNPQHAQTQGLFQPIECNPTLQIGYNPSCSDQMTATSHAQQVSGF 237
               ++ SW GGEQ   Y  QHAQTQG FQP+ECN TLQIGY+P+ S Q+TA +  Q V+G 
Sbjct:   181 NNIQQSWGGGEQSGAYGQQHAQTQGFFQPLECNSTLQIGYDPATSSQITAVTSGQNVNGI 240

Query:   238 IPGWML 243
             IPGWML
Sbjct:   241 IPGWML 246

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q6EUV7 grcd2 "MADS domain protein" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
 Identities = 149/247 (60%), Positives = 186/247 (75%)

Query:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
             MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKL+EFCS+
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLFEFCST 60

Query:    61 SSMLKTLERYQKCSYGAVEVNKPAKELE-SSYREYLKLKTRFESLQRTQRNLLGEDLGPL 119
             S+MLK LERYQ C+YG++EV++     E SSY+EY+KLK ++ESLQ+ QR L GEDLGPL
Sbjct:    61 SNMLKMLERYQNCTYGSMEVDRSTPNAEQSSYKEYMKLKAKYESLQQYQRQLFGEDLGPL 120

Query:   120 NSKXXXXXXXXXXXXXKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKTQ 179
             + K             + +RS +TQ MLD+LS+LQ KE++ ++ N+AL  KL+E+ A+ Q
Sbjct:   121 SLKELEQLERQLDSTLRQIRSIRTQSMLDRLSELQVKERMWVEANKALQNKLEEVYAENQ 180

Query:   180 LRPSWEGGEQQLGYNPQHA---QTQGLFQPIECNPTLQIGYNPSCSDQMTATSHAQQVSG 236
               PSW  GE    Y  +H    Q+QG FQP++CN  LQIGYN   S  +TA+++ Q ++G
Sbjct:   181 AGPSWAAGEHHSSYGQEHQHQHQSQGFFQPLDCNSNLQIGYNTVDSSHITASTNGQNLNG 240

Query:   237 FIPGWML 243
              IPGWML
Sbjct:   241 LIPGWML 247

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ATF1 FBP9 "MADS-box transcription factor FBP9" [Petunia x hybrida (taxid:4102)]

 Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
 Identities = 150/245 (61%), Positives = 186/245 (75%)

Query:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
             MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEFCS+
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCST 60

Query:    61 SSMLKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPLN 120
             SSM+KTLE+YQ+CSY +++  + A + +++Y EYL+LK R E LQR+QRNLLGEDLG LN
Sbjct:    61 SSMMKTLEKYQQCSYASLDPMQSANDTQNNYHEYLRLKARVELLQRSQRNLLGEDLGSLN 120

Query:   121 SKXXXXXXXXXXXXXKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKTQL 180
             SK             K +RS KTQ+MLDQL+DLQ KEQ+L + N+ L  KL+E  A+  L
Sbjct:   121 SKELEQLEHQLDSSLKQIRSKKTQHMLDQLADLQQKEQMLAEANKQLRRKLEESAARIPL 180

Query:   181 RPSWEGGEQQLGYNPQHAQTQGLFQPIECNPTL-QIGYNPSCSDQMT-ATSHAQQVSGFI 238
             R SW+ G Q + +N    QT+G FQP+  N +  Q GY+P  ++++  A S AQ ++GFI
Sbjct:   181 RLSWDNGGQPMQHNRLPPQTEGFFQPLGLNSSSPQFGYSPMGANEVNNAVSTAQNMNGFI 240

Query:   239 PGWML 243
             PGWML
Sbjct:   241 PGWML 245

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|D2T2F8 grcd4 "GRCD4 protein" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
 Identities = 150/249 (60%), Positives = 180/249 (72%)

Query:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
             MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query:    61 SSMLKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPLN 120
             SSM+KTLE+Y  CSYG+++ ++P  E + +Y EYL+LK R E LQR+QRNLLGEDL PLN
Sbjct:    61 SSMVKTLEKYHSCSYGSLKASQPENESQYNYHEYLRLKARVEVLQRSQRNLLGEDLAPLN 120

Query:   121 SKXXXXXXXXXXXXXKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKTQL 180
             +K             + +RSTKTQ MLDQL+DLQ KEQ+L +TN+AL  KL+E   +  +
Sbjct:   121 TKELEQLEHQLEMSLRKIRSTKTQSMLDQLADLQRKEQVLAETNKALRKKLEESAQEYPV 180

Query:   181 RPSWEGGEQQLGYNPQHAQTQGLFQPIECNPTLQ-----IGYNPSCSDQMT-ATSHAQQV 234
             R  WEGG Q + YNP    +   FQP+  N T+      + YNP  SD+M  A ++    
Sbjct:   181 RQMWEGGAQTIPYNPLPTHSDEFFQPLGLNSTMHNSFNGLRYNPIVSDEMNVAGANNNSP 240

Query:   235 SGFIPGWML 243
             +G  PGWML
Sbjct:   241 NGLFPGWML 249

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q03489 FBP2 "Agamous-like MADS-box protein AGL9 homolog" [Petunia x hybrida (taxid:4102)]

 Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
 Identities = 157/246 (63%), Positives = 177/246 (71%)

Query:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
             MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query:    61 SSMLKTLERYQKCSYGAVEVNKPAKE-LE-SSYREYLKLKTRFESLQRTQRNLLGEDLGP 118
             SSMLKTLERYQKC+YGA E N   +E LE SS +EYLKLK R+E+LQR+QRNLLGEDLGP
Sbjct:    61 SSMLKTLERYQKCNYGAPETNISTREALEISSQQEYLKLKARYEALQRSQRNLLGEDLGP 120

Query:   119 LNSKXXXXXXXXXXXXXKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKT 178
             LNSK             K +RST+TQ MLDQL DLQ KE  L + NR L  +L E    +
Sbjct:   121 LNSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQRLME---GS 177

Query:   179 QLRPSWEGGEQQLGYNPQHAQTQG--LFQPIECNPTLQIGYNPSCSDQMTATSHAQQVSG 236
              L   W+   Q +GY  Q  QTQG   F P+EC PTLQIGY    +D +T       V+ 
Sbjct:   178 TLNLQWQQNAQDVGYGRQATQTQGDGFFHPLECEPTLQIGYQ---NDPITVGGAGPSVNN 234

Query:   237 FIPGWM 242
             ++ GW+
Sbjct:   235 YMAGWL 240

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|O65874 MTF1 "MADS-box transcription factor 1" [Pisum sativum (taxid:3888)]

 Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
 Identities = 156/253 (61%), Positives = 184/253 (72%)

Query:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
             MGRGRVELKR+ENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALI+FSNRGKLYEFCS+
Sbjct:     1 MGRGRVELKRVENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCST 60

Query:    61 SSMLKTLERYQKCSYGAVEVNKPAKE---LE-SSYREYLKLKTRFESLQRTQRNLLGEDL 116
             SSMLKTLERYQKC+YGA E N  +KE   LE SS +EYLKLK R+ESLQR+QRNL+GEDL
Sbjct:    61 SSMLKTLERYQKCNYGAPEGNVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDL 120

Query:   117 GPLNSKXXXXXXXXXXXXXKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLD--EI 174
             GPL+SK             K +RST+TQ+MLDQL DLQ KE LL + NRAL  +++  +I
Sbjct:   121 GPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQRMEGYQI 180

Query:   175 NAKTQLRPSWEGGEQQLGYNPQH-AQTQG--LFQ--PIECNPTLQIGYNPSCSDQMTATS 229
             N+  QL  S E     +GY   H   T G  LFQ  PIEC PTLQIGY+    D  +  +
Sbjct:   181 NS-LQLNLSAE----DMGYGRHHQGHTHGDELFQVQPIECEPTLQIGYHQG--DPGSVVT 233

Query:   230 HAQQVSGFIPGWM 242
                 ++ ++ GW+
Sbjct:   234 AGPSMNNYMGGWL 246

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0005634 "nucleus" evidence=IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0009888 "tissue development" evidence=NAS

TAIR|locus:2032372 SEP3 "SEPALLATA3" [Arabidopsis thaliana (taxid:3702)]

 Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
 Identities = 150/248 (60%), Positives = 183/248 (73%)

Query:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
             MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query:    61 SSMLKTLERYQKCSYGAVEVNKPAKE---LE-SSYREYLKLKTRFESLQRTQRNLLGEDL 116
             SSML+TLERYQKC+YGA E N P++E   +E SS +EYLKLK R+++LQRTQRNLLGEDL
Sbjct:    61 SSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDL 120

Query:   117 GPLNSKXXXXXXXXXXXXXKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKL-DEIN 175
             GPL++K             K +R+ +TQ+MLDQL+DLQ+KE++L +TN+ L ++L D   
Sbjct:   121 GPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADGYQ 180

Query:   176 AKTQLRPSWEGGEQQLGYNPQHAQ-TQGLFQPIECNPTLQIGYNPSCSDQMTATSHAQQV 234
                QL P+ E  +    ++ Q  Q +Q  FQP+EC P LQIGY     D M A      V
Sbjct:   181 MPLQLNPNQEEVDHYGRHHHQQQQHSQAFFQPLECEPILQIGYQGQ-QDGMGA---GPSV 236

Query:   235 SGFIPGWM 242
             + ++ GW+
Sbjct:   237 NNYMLGWL 244

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0001708 "cell fate specification" evidence=RCA;IMP

GO:0010093 "specification of floral organ identity" evidence=RCA;IMP

GO:0009908 "flower development" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0048481 "ovule development" evidence=RCA;IMP

GO:0048833 "specification of floral organ number" evidence=IMP

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

UNIPROTKB|D2T2F9 grcd5 "GRCD5 protein" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
 Identities = 151/253 (59%), Positives = 177/253 (69%)

Query:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
             MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query:    61 SSMLKTLERYQKCSYGAVE-VNKPAKE-LE-SSYREYLKLKTRFESLQRTQRNLLGEDLG 117
             SSMLKTLERYQKC+YGA +  N  A+E LE SS +EYLKLK R+E+LQR+QRNLLGEDLG
Sbjct:    61 SSMLKTLERYQKCNYGAPDQTNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEDLG 120

Query:   118 PLNSKXXXXXXXXXXXXXKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAK 177
             PLN K             KH+RS +TQ MLD L+DLQ KE  L + NR L  +L E    
Sbjct:   121 PLNCKELESLERQLDTSLKHIRSARTQLMLDTLTDLQKKEHALNEANRTLKQRLIE---G 177

Query:   178 TQLRP-SW-EGGEQQLGYN-----PQHAQTQGLFQPIECNPTLQIGYNPSCSDQMTATSH 230
             TQ+    W     Q++ Y+     PQH   +  F P++C PTLQIGY     +   A + 
Sbjct:   178 TQINSLHWYPQAPQEVCYDDRQHAPQHQTDEAFFHPLDCGPTLQIGYQTDPINVAGAEAV 237

Query:   231 A-QQVSGFIPGWM 242
             A   ++ ++ GW+
Sbjct:   238 AGPSMNNYMQGWL 250

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P29382	SEP1_ARATH	No assigned EC number	0.7768	1.0	0.9681	no	no
P29384	SEP2_ARATH	No assigned EC number	0.74	1.0	0.972	yes	no
P0C5B0	MADS7_ORYSI	No assigned EC number	0.5889	0.9753	0.9518	N/A	no
Q9SAR1	MADS8_ORYSJ	No assigned EC number	0.6264	0.9547	0.9354	yes	no
Q03489	AGL9_PETHY	No assigned EC number	0.6788	0.9711	0.9792	N/A	no
Q39685	CMB1_DIACA	No assigned EC number	0.6653	0.9506	0.9914	N/A	no
O04067	AGL9_SINAL	No assigned EC number	0.62	0.9835	0.9409	N/A	no
A2XDY1	MADS1_ORYSI	No assigned EC number	0.6098	0.8847	0.8365	N/A	no
A2Y9P0	MADS5_ORYSI	No assigned EC number	0.5818	0.8765	0.9466	N/A	no
Q38694	AGL9_ARADE	No assigned EC number	0.6326	0.9835	0.956	N/A	no
Q42464	AGL9_SOLLC	No assigned EC number	0.7309	0.7860	0.8526	N/A	no
O65874	MTF1_PEA	No assigned EC number	0.6561	0.9670	0.9514	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	243
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	3e-45
smart00432	59	smart00432, MADS, MADS domain	7e-35
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	4e-33
pfam01486	100	pfam01486, K-box, K-box region	2e-31
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	7e-28
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	7e-26
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	4e-10

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  145 bits (368), Expect = 3e-45
 Identities = 57/75 (76%), Positives = 64/75 (85%), Gaps = 1/75 (1%)

Query: 2  GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 61
          GRG++E+KRIEN  NRQVTF+KRRNGLLKKA+ELSVLCDAEVALIIFS+ GKLYEF  S 
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFS-SP 59

Query: 62 SMLKTLERYQKCSYG 76
          SM K +ERYQK S  
Sbjct: 60 SMEKIIERYQKTSGS 74

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score =  118 bits (298), Expect = 7e-35
 Identities = 46/59 (77%), Positives = 52/59 (88%)

Query: 2  GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
          GR ++E+KRIENK NRQVTF+KRRNGL KKA+ELSVLCDAEVALI+FS  GKLYEF S 
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59

Length = 59

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score =  114 bits (287), Expect = 4e-33
 Identities = 46/59 (77%), Positives = 53/59 (89%)

Query: 2  GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
          GRG++E+KRIENK +RQVTF+KRRNGL KKA ELSVLCDAEVA+I+FS  GKLYEF SS
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score =  111 bits (279), Expect = 2e-31
 Identities = 47/94 (50%), Positives = 67/94 (71%)

Query: 80  VNKPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKHVR 139
            +    + E+  +E  KLK + E+LQR QR+LLGEDLG L+ KEL+QLE+QLE+ LKH+R
Sbjct: 7   NDLWESKYENLQQEAAKLKKQNENLQREQRHLLGEDLGSLSLKELQQLEQQLENGLKHIR 66

Query: 140 STKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDE 173
           S K + +L+Q+ +LQ KE+ L + NR L  KL+E
Sbjct: 67  SRKNELLLNQIEELQKKERELQEENRNLRQKLEE 100

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  101 bits (253), Expect = 7e-28
 Identities = 39/69 (56%), Positives = 50/69 (72%)

Query: 2  GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 61
          GR ++++KRIENK  R VTF+KRR GL KKA ELS LC AEVA+I++S  GKLY F  SS
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Query: 62 SMLKTLERY 70
           +   + R+
Sbjct: 61 EVEGVISRF 69

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 95.1 bits (237), Expect = 7e-26
 Identities = 41/51 (80%), Positives = 47/51 (92%)

Query: 9  KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
          KRIENK NRQVTF+KRRNG+ KKA+ELSVLCDAEVA+IIFS+ GKLYE+ S
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEYSS 51

Length = 51

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 58.9 bits (142), Expect = 4e-10
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           +   ++ +  I NK  R VTF+KR++G+ KKA+ELSVL   EV L++ S  G ++ F + 
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP 140

Query: 61  S 61
            
Sbjct: 141 K 141

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	100.0
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.97
smart00432	59	MADS MADS domain.	99.96
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.96
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.94
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.85
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.79
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.51
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	94.47
PF10584	23	Proteasome_A_N: Proteasome subunit A N-terminal si	89.07
PRK04098	158	sec-independent translocase; Provisional	87.21
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	86.99
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	86.91
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	84.98
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	84.81
cd07429	108	Cby_like Chibby, a nuclear inhibitor of Wnt/beta-c	83.97
PRK15422	79	septal ring assembly protein ZapB; Provisional	81.98
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	80.09
PRK13169	110	DNA replication intiation control protein YabA; Re	80.06

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=5.9e-41  Score=282.53  Aligned_cols=162  Identities=49%  Similarity=0.644  Sum_probs=132.6

Q ss_pred             CCccccceeeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeeccc-chhhHHHhhhhcccCccc
Q 026143            1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS-SMLKTLERYQKCSYGAVE   79 (243)
Q Consensus         1 MgR~Kv~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~~-sm~~ileRY~~~~~~~~~   79 (243)
                      ||||||+|+||||+++|||||+|||+||||||+|||||||||||||||||+|++|+|++++ +|..|++||.........
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            9999999999999999999999999999999999999999999999999999999988765 499999999987665443


Q ss_pred             cCCCchhh---------------------HhHHHHHHHhHHHHHHHhh---hhhhhccCCCCCCCH-HHHHHHHHHHHHH
Q 026143           80 VNKPAKEL---------------------ESSYREYLKLKTRFESLQR---TQRNLLGEDLGPLNS-KELEQLERQLESS  134 (243)
Q Consensus        80 ~~~~~~e~---------------------~~~~~E~~kLk~kie~Lq~---~~r~l~GedL~~Ls~-~EL~~LE~qLe~s  134 (243)
                      ......+.                     ..+..+...++...+.|+.   .+++++|++|.+++. .+|..++.+++.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~  160 (195)
T KOG0014|consen   81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS  160 (195)
T ss_pred             ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence            33222221                     1123344555666666653   488999999999999 9999999999999


Q ss_pred             hHHHHHHHHHhHHHHHH-HHHHHHHHHHH
Q 026143          135 LKHVRSTKTQYMLDQLS-DLQNKEQLLLD  162 (243)
Q Consensus       135 L~~IR~rK~qlm~e~i~-~Lk~ke~~L~e  162 (243)
                      +..+|..+...+.+++. .++.++..+.+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (195)
T KOG0014|consen  161 LHNSRSSKSKPLSDSNFQVLQEKEKSLEA  189 (195)
T ss_pred             hcCCCCCCCcCCcchhhhhhcccchhccc
Confidence            99999999999888876 55555544443

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=100.00  E-value=2.4e-34  Score=208.43  Aligned_cols=74  Identities=77%  Similarity=1.093  Sum_probs=71.6

Q ss_pred             CccccceeeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecccchhhHHHhhhhcccC
Q 026143            2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYG   76 (243)
Q Consensus         2 gR~Kv~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~~sm~~ileRY~~~~~~   76 (243)
                      ||+||+|++|||+.+|+|||+||++||||||+||||||||+||||||||+|++|+|+|++ +..||+||...+..
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s-~~~vl~ry~~~~~~   74 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS-MEKIIERYQKTSGS   74 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCC-HHHHHHHHHhcccc
Confidence            899999999999999999999999999999999999999999999999999999999987 89999999998754

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.97  E-value=1.9e-31  Score=196.03  Aligned_cols=78  Identities=51%  Similarity=0.766  Sum_probs=72.3

Q ss_pred             CccccceeeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecccchhhHHHhhhhcccCccc
Q 026143            2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAVE   79 (243)
Q Consensus         2 gR~Kv~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~~sm~~ileRY~~~~~~~~~   79 (243)
                      ||+||+|++|+|+.+|+|||+||+.||||||+||||||||+||+|||||+|++|+|++++++..+|+||...+.....
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   78 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSALERK   78 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHhhhh
Confidence            899999999999999999999999999999999999999999999999999999988765599999999987655443

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.96  E-value=1.4e-30  Score=178.73  Aligned_cols=59  Identities=78%  Similarity=1.156  Sum_probs=57.8

Q ss_pred             CccccceeeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecc
Q 026143            2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS   60 (243)
Q Consensus         2 gR~Kv~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~   60 (243)
                      ||+||+|++|+|+..|++||+||+.||+|||+||||||||+||+|||||+|++|.|++|
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999875

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.96  E-value=8.1e-30  Score=175.00  Aligned_cols=59  Identities=78%  Similarity=1.174  Sum_probs=57.5

Q ss_pred             CccccceeeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecc
Q 026143            2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS   60 (243)
Q Consensus         2 gR~Kv~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~   60 (243)
                      ||+||+|++|+|+..|++||+||+.||+|||+||||||||+||+|||||+|++|+|+++
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            89999999999999999999999999999999999999999999999999999999864

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.94  E-value=1.6e-28  Score=163.36  Aligned_cols=51  Identities=67%  Similarity=0.998  Sum_probs=47.2

Q ss_pred             eeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeec
Q 026143            9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS   59 (243)
Q Consensus         9 k~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s   59 (243)
                      |+|||+..|++||+|||.||||||+|||+|||||||||||||+|++|.|||
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            689999999999999999999999999999999999999999999999986

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.85  E-value=8e-21  Score=144.37  Aligned_cols=91  Identities=45%  Similarity=0.604  Sum_probs=86.3

Q ss_pred             CchhhHhHHHHHHHhHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 026143           83 PAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLD  162 (243)
Q Consensus        83 ~~~e~~~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~e  162 (243)
                      ++...+.|..++.+|+.+++.|+..+|+++|+||++||++||++||++|+.||.+||+||+++|.++|..|++|++.|.+
T Consensus        10 ~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~   89 (100)
T PF01486_consen   10 WDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEE   89 (100)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 026143          163 TNRALTIKLDE  173 (243)
Q Consensus       163 eN~~L~~kl~~  173 (243)
                      +|..|+.++++
T Consensus        90 en~~L~~~~~e  100 (100)
T PF01486_consen   90 ENNQLRQKIEE  100 (100)
T ss_pred             HHHHHHHHhcC
Confidence            99999998864

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.79  E-value=2.8e-20  Score=162.07  Aligned_cols=66  Identities=41%  Similarity=0.747  Sum_probs=62.2

Q ss_pred             CccccceeeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecccchhhHHH
Q 026143            2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLE   68 (243)
Q Consensus         2 gR~Kv~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~~sm~~ile   68 (243)
                      ||.||+|++|||+..|.|||||||.|+||||+|||||.+.+|-|+|.|.+|-+|.|+++- ++.||.
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpK-Lep~i~  128 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPK-LEPMIT  128 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEecccc-cccccc
Confidence            799999999999999999999999999999999999999999999999999999999985 666653

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.51  E-value=8.3e-15  Score=133.26  Aligned_cols=66  Identities=36%  Similarity=0.599  Sum_probs=61.9

Q ss_pred             CCccccceeeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecccchhhHH
Q 026143            1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTL   67 (243)
Q Consensus         1 MgR~Kv~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~~sm~~il   67 (243)
                      |||+|+.|.+|+|+.+|.|||+||+.||+|||+||+||.|.+|.|+|.|.+|+++.|+++. .+.|+
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~-~e~v~  146 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPK-LESVV  146 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCc-ccccc
Confidence            7899999999999999999999999999999999999999999999999999999999886 44443

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=94.47  E-value=0.39  Score=34.16  Aligned_cols=50  Identities=20%  Similarity=0.346  Sum_probs=37.1

Q ss_pred             CCHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143          119 LNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDE  173 (243)
Q Consensus       119 Ls~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~  173 (243)
                      +|++.|.+||..+..++..|.     ++..+++.|+.+-..|.++|..|+.....
T Consensus         1 M~~E~l~~LE~ki~~aveti~-----~Lq~e~eeLke~n~~L~~e~~~L~~en~~   50 (72)
T PF06005_consen    1 MSLELLEQLEEKIQQAVETIA-----LLQMENEELKEKNNELKEENEELKEENEQ   50 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            578899999999999999995     45567788888766666666666655443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3

Probab=89.07  E-value=0.1  Score=28.82  Aligned_cols=15  Identities=27%  Similarity=0.700  Sum_probs=11.9

Q ss_pred             ceeeeEeeCCCCcee
Q 026143           42 EVALIIFSNRGKLYE   56 (243)
Q Consensus        42 eValIifS~~Gkl~e   56 (243)
                      |-.+.+|||.|+||.
T Consensus         2 D~~~t~FSp~Grl~Q   16 (23)
T PF10584_consen    2 DRSITTFSPDGRLFQ   16 (23)
T ss_dssp             SSSTTSBBTTSSBHH
T ss_pred             CCCceeECCCCeEEe
Confidence            345678999999985

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....

>PRK04098 sec-independent translocase; Provisional

Probab=87.21  E-value=0.27  Score=40.25  Aligned_cols=31  Identities=23%  Similarity=0.219  Sum_probs=23.4

Q ss_pred             ceeeeEeeCCCCceeeecccchhhHHHhhhhccc
Q 026143           42 EVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSY   75 (243)
Q Consensus        42 eValIifS~~Gkl~e~~s~~sm~~ileRY~~~~~   75 (243)
                      =||||||+| +||+++..  .+-+.+-.|++...
T Consensus        14 vVaLlvfGP-~KLP~~~r--~lGk~ir~~K~~~~   44 (158)
T PRK04098         14 VVAIIFLGP-DKLPQAMV--DIAKFFKAVKKTIN   44 (158)
T ss_pred             HHHHhhcCc-hHHHHHHH--HHHHHHHHHHHHHH
Confidence            489999998 59988764  37777877777543

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=86.99  E-value=16  Score=33.23  Aligned_cols=63  Identities=21%  Similarity=0.407  Sum_probs=49.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 026143          114 EDLGPLNSKELEQLERQLESSLKHVRSTKTQY--MLDQLSDLQNKEQLLLDTNRALTIKLDEINA  176 (243)
Q Consensus       114 edL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql--m~e~i~~Lk~ke~~L~eeN~~L~~kl~~~~~  176 (243)
                      ..++.++..+|..|-..|...-..|..+|..+  +..++..++.+...+.++-..+...+.+...
T Consensus       201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~  265 (325)
T PF08317_consen  201 EEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK  265 (325)
T ss_pred             hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45889999999999999999999998887765  4577777777777777777777777766543

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=86.91  E-value=1.1  Score=30.73  Aligned_cols=31  Identities=32%  Similarity=0.477  Sum_probs=24.5

Q ss_pred             hhccCCCCCCCHHHHHHHHHHHHHHhHHHHH
Q 026143          110 NLLGEDLGPLNSKELEQLERQLESSLKHVRS  140 (243)
Q Consensus       110 ~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR~  140 (243)
                      +.+|+||+.||++||..--..|+.-+.+++.
T Consensus        12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~   42 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEERIALLEAEIARLEA   42 (59)
T ss_pred             cccCCCchhcCHHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999866666666665554

The function of this family is unknown.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=84.98  E-value=14  Score=33.56  Aligned_cols=64  Identities=19%  Similarity=0.352  Sum_probs=47.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 026143          114 EDLGPLNSKELEQLERQLESSLKHVRSTKTQY--MLDQLSDLQNKEQLLLDTNRALTIKLDEINAK  177 (243)
Q Consensus       114 edL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql--m~e~i~~Lk~ke~~L~eeN~~L~~kl~~~~~~  177 (243)
                      ++++.++.++|..+-..|..-...|...+.++  +.+++..+..+.....+.-..+...+.+....
T Consensus       196 ~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~  261 (312)
T smart00787      196 DELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKK  261 (312)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788999999999999999999988877765  44666666666666666666666666665443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.81  E-value=12  Score=26.52  Aligned_cols=50  Identities=12%  Similarity=0.284  Sum_probs=35.8

Q ss_pred             CCHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143          119 LNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDE  173 (243)
Q Consensus       119 Ls~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~  173 (243)
                      +|++=|.+||..+..++.-|     +|+.-+|++|+.|-..|..+-..++...++
T Consensus         1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q~~rea   50 (79)
T COG3074           1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQREA   50 (79)
T ss_pred             CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Confidence            57778889999988888887     566677788887776666665555444443

>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins

Probab=83.97  E-value=1.9  Score=33.13  Aligned_cols=26  Identities=27%  Similarity=0.420  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143          148 DQLSDLQNKEQLLLDTNRALTIKLDE  173 (243)
Q Consensus       148 e~i~~Lk~ke~~L~eeN~~L~~kl~~  173 (243)
                      ..+..|++|.+.|+|||+.|+-|++-
T Consensus        72 ~e~~rlkkk~~~LeEENNlLklKiev   97 (108)
T cd07429          72 REVLRLKKKNQQLEEENNLLKLKIEV   97 (108)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456778889999999999998764

Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=81.98  E-value=16  Score=26.44  Aligned_cols=43  Identities=14%  Similarity=0.341  Sum_probs=33.4

Q ss_pred             CCHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 026143          119 LNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRA  166 (243)
Q Consensus       119 Ls~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~  166 (243)
                      +|++=|.+||..+..++..|     .++.-+|++||.|-..|.+++..
T Consensus         1 MS~EvleqLE~KIqqAvdtI-----~LLqmEieELKekn~~L~~e~~~   43 (79)
T PRK15422          1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN   43 (79)
T ss_pred             CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            57788999999999999988     56667778888776666666555

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=80.09  E-value=4.5  Score=27.51  Aligned_cols=25  Identities=20%  Similarity=0.392  Sum_probs=16.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143          145 YMLDQLSDLQNKEQLLLDTNRALTI  169 (243)
Q Consensus       145 lm~e~i~~Lk~ke~~L~eeN~~L~~  169 (243)
                      .+.++|.+|..+...|+.||..|+.
T Consensus        18 vLK~~I~eL~~~n~~Le~EN~~Lk~   42 (59)
T PF01166_consen   18 VLKEQIAELEERNSQLEEENNLLKQ   42 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556666776666677777766653

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=80.06  E-value=14  Score=28.49  Aligned_cols=49  Identities=31%  Similarity=0.403  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143          121 SKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEI  174 (243)
Q Consensus       121 ~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~~  174 (243)
                      ++-+.+||+++..-+..+..-|.+     +.+|-..-..|.-||..|+..+.+.
T Consensus         7 fd~l~~le~~l~~l~~el~~LK~~-----~~el~EEN~~L~iEN~~Lr~~l~~~   55 (110)
T PRK13169          7 FDALDDLEQNLGVLLKELGALKKQ-----LAELLEENTALRLENDKLRERLEEL   55 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            356778888888877777665543     3445455566777777777777763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	243
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		7e-16
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		8e-16
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		8e-16
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		1e-15
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		2e-15
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		6e-15
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		8e-11
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		6e-10
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		8e-10

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 80.5 bits (197), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 55/69 (79%), Gaps = 1/69 (1%)
Query: 2  GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 61
          GR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-AST 59
Query: 62 SMLKTLERY 70
           M K L +Y
Sbjct: 60 DMDKVLLKY 68

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 80.5 bits (197), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 59/82 (71%), Gaps = 8/82 (9%)
Query: 2  GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 61
          GR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-AST 59
Query: 62 SMLKTLERYQKCSYGAVEVNKP 83
           M K L +Y        E N+P
Sbjct: 60 DMDKVLLKY-------TEYNEP 74

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 80.5 bits (197), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 55/69 (79%), Gaps = 1/69 (1%)
Query: 2  GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 61
          GR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-AST 59
Query: 62 SMLKTLERY 70
           M K L +Y
Sbjct: 60 DMDKVLLKY 68

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 58/74 (78%), Gaps = 1/74 (1%)
Query: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
          MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQY-AS 59
Query: 61 SSMLKTLERYQKCS 74
          + M + L +Y + S
Sbjct: 60 TDMDRVLLKYTEYS 73

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 59/82 (71%), Gaps = 8/82 (9%)
Query: 2  GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 61
          GR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVL DAE+ALIIF++  KL+++ +S+
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQY-AST 59
Query: 62 SMLKTLERYQKCSYGAVEVNKP 83
           M K L +Y        E N+P
Sbjct: 60 DMDKVLLKY-------TEYNEP 74

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 57/73 (78%), Gaps = 1/73 (1%)
Query: 2  GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 61
          GR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQY-AST 59
Query: 62 SMLKTLERYQKCS 74
           M + L +Y + S
Sbjct: 60 DMDRVLLKYTEYS 72

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 42/57 (73%)
Query: 3  RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
          R ++E+K IENK  R VTF+KR++G++KKA+ELSVL   +V L++ S  G +Y F +
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST 74

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 3  RGRVELKR--IENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
          RGRV++K   I+NK+ R  TF+KR+ G++KKAYELS L   +V L++ S  G +Y F +
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 67

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 3  RGRVELKR--IENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
          RGRV++K   I+NK+ R  TF+KR+ G++KKAYELS L   +V L++ S  G +Y F +
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	243
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	1e-45
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	8e-45
1egw_A	77	MADS box transcription enhancer factor 2, polypept	7e-44
1hbx_A	92	SRF, serum response factor; gene regulation, trans	1e-43
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	1e-42
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score =  146 bits (371), Expect = 1e-45
 Identities = 42/97 (43%), Positives = 60/97 (61%), Gaps = 7/97 (7%)

Query: 2  GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 61
          GR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++  S+
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYA-ST 59

Query: 62 SMLKTLERYQKCSYGAVEVNKPAKELESSYREYLKLK 98
           M K L +Y + +              S   E L  K
Sbjct: 60 DMDKVLLKYTEYNEPHESRTN------SDIVEALNKK 90

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  144 bits (366), Expect = 8e-45
 Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
             R ++E+K IENK  R VTF+KR++G++KKA+ELSVL   +V L++ S  G +Y F  +
Sbjct: 16  KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFS-T 74

Query: 61  SSMLKTLERYQKCSYGAVEVNKPAKE 86
                 + + +  +     +N P  E
Sbjct: 75  PKFEPIVTQQEGRNLIQACLNAPDDE 100

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score =  141 bits (358), Expect = 7e-44
 Identities = 38/73 (52%), Positives = 56/73 (76%), Gaps = 1/73 (1%)

Query: 2  GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 61
          GR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++  S+
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYA-ST 59

Query: 62 SMLKTLERYQKCS 74
           M K L +Y + +
Sbjct: 60 DMDKVLLKYTEYN 72

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  141 bits (357), Expect = 1e-43
 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           GR +++++ I+NK+ R  TF+KR+ G++KKAYELS L   +V L++ S  G +Y F  +
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-T 68

Query: 61 SSMLKTLERYQKCSYGAVEVNKP 83
            +   +      +     +N P
Sbjct: 69 RKLQPMITSETGKALIQTCLNSP 91

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  139 bits (351), Expect = 1e-42
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           GR +++++ I+NK+ R  TF+KR+ G++KKAYELS L   +V L++ S  G +Y F  +
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-T 67

Query: 61 SSMLKTLERYQKCSYGAVEVNKPAKELESS 90
            +   +      +     +N P     S 
Sbjct: 68 RKLQPMITSETGKALIQTCLNSPDSPPRSD 97

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 4e-07
 Identities = 37/229 (16%), Positives = 70/229 (30%), Gaps = 56/229 (24%)

Query: 15  INRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSM-LKTL--ERYQ 71
           ++R   + K R  L     EL         ++I    G        + + L      + Q
Sbjct: 131 VSRLQPYLKLRQAL----LELRP----AKNVLIDGVLG-----SGKTWVALDVCLSYKVQ 177

Query: 72  KCSYGAV------EVNKPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPLNSKELE 125
                 +        N P   LE   +   ++   + S      N+       L    ++
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI------KLRIHSIQ 231

Query: 126 QLERQLESSLKHVRSTKTQYMLDQLSDLQNKE---------QLLLDT-NRALTIKLDEIN 175
              R+L  S  +         L  L ++QN +         ++LL T  + +T   D ++
Sbjct: 232 AELRRLLKSKPYENC------LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT---DFLS 282

Query: 176 AKTQLRPSWEGGEQQLGYNPQHAQTQGLF-----QPIECNPTLQIGYNP 219
           A T    S +     +   P   + + L         +  P   +  NP
Sbjct: 283 AATTTHISLD--HHSMTLTP--DEVKSLLLKYLDCRPQDLPREVLTTNP 327

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 7e-05
 Identities = 41/226 (18%), Positives = 66/226 (29%), Gaps = 71/226 (31%)

Query: 5   RVELKRIENKINRQVTFAKRRNGLLKKAYELSV--LCDAEV-----ALIIFSNRGKLYEF 57
           R  L   +N   + V   K     L    E S+  L  AE       L +F     +   
Sbjct: 338 RDGLATWDNW--KHVNCDK-----LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI--- 387

Query: 58  CSSSSMLKTLERY-QKCSYGAVE-----------VNKPAKELESS-YREYLKLKTRFESL 104
                    L           V            V K  KE   S    YL+LK + E+ 
Sbjct: 388 -----PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442

Query: 105 QRTQRNLL----------GEDLGPLNS------------KELEQLERQ------------ 130
               R+++           +DL P               K +E  ER             
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502

Query: 131 LESSLKHVRS--TKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEI 174
           LE  ++H  +    +  +L+ L  L+  +  + D +      ++ I
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	243
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	90.87
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	83.9

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=1.5e-40  Score=238.71  Aligned_cols=73  Identities=52%  Similarity=0.878  Sum_probs=69.7

Q ss_pred             CccccceeeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecccchhhHHHhhhhccc
Q 026143            2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSY   75 (243)
Q Consensus         2 gR~Kv~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~~sm~~ileRY~~~~~   75 (243)
                      ||+||+|++|||+++|||||+|||+||||||+||||||||||||||||++||+|+|+|++ |++||+||+++++
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~-~~~il~ry~~~~~   73 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD-MDKVLLKYTEYNE   73 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSC-HHHHHHHHHHC--
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCC-HHHHHHHHHhccC
Confidence            899999999999999999999999999999999999999999999999999999999876 9999999999764

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=3.6e-40  Score=242.35  Aligned_cols=76  Identities=50%  Similarity=0.825  Sum_probs=72.6

Q ss_pred             CccccceeeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecccchhhHHHhhhhcccCcc
Q 026143            2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAV   78 (243)
Q Consensus         2 gR~Kv~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~~sm~~ileRY~~~~~~~~   78 (243)
                      |||||+|++|||+++|||||+|||+||||||+|||||||||||||||||+||+|+|+|++ |+.||+||++++....
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~-~~~il~rY~~~~~~~~   76 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD-MDKVLLKYTEYNEPHE   76 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSC-HHHHHHHHHHCCSCCC
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCC-HHHHHHHHHhcCcccc
Confidence            899999999999999999999999999999999999999999999999999999999975 9999999999876544

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=5.9e-39  Score=239.81  Aligned_cols=74  Identities=38%  Similarity=0.638  Sum_probs=70.8

Q ss_pred             CCccccceeeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecccchhhHHHhhhhccc
Q 026143            1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSY   75 (243)
Q Consensus         1 MgR~Kv~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~~sm~~ileRY~~~~~   75 (243)
                      |||+||+|++|||+++|||||+|||+||||||+||||||||+|||||||++||+|+|+|++ |..||+||.....
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps-~~~il~r~~G~~l   89 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK-FEPIVTQQEGRNL   89 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTT-TTHHHHSHHHHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCC-HHHHHHHhhCCcH
Confidence            8999999999999999999999999999999999999999999999999999999999986 9999999976543

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=6.7e-38  Score=231.18  Aligned_cols=70  Identities=36%  Similarity=0.658  Sum_probs=68.0

Q ss_pred             CCccccceeeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecccchhhHHHhhh
Q 026143            1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQ   71 (243)
Q Consensus         1 MgR~Kv~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~~sm~~ileRY~   71 (243)
                      |||+||+|++|||+++|||||+|||+||||||+||||||||||||||||++|++|+|+|++ |..||++|.
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~-~~~~i~~~~   79 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK-LQPMITSET   79 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGG-GGGGTSSHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCC-HHHHHhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999986 999999774

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=1.2e-37  Score=234.05  Aligned_cols=77  Identities=32%  Similarity=0.606  Sum_probs=71.3

Q ss_pred             CCccccceeeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecccchhhHHHh-----hhhccc
Q 026143            1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLER-----YQKCSY   75 (243)
Q Consensus         1 MgR~Kv~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~~sm~~ileR-----Y~~~~~   75 (243)
                      |||+||+|++|||+++|||||+|||+||||||+||||||||||||||||++||+|+|+|++ |..||++     |.+++.
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~-~~~vi~~~~Gk~l~~~c~   87 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK-LQPMITSETGKALIQTCL   87 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGG-GGGGTSSHHHHHHHHHTT
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCcc-HHHHHHhhhhhHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999986 9999998     556655


Q ss_pred             Ccc
Q 026143           76 GAV   78 (243)
Q Consensus        76 ~~~   78 (243)
                      ...
T Consensus        88 ~~~   90 (103)
T 1k6o_B           88 NSP   90 (103)
T ss_dssp             CC-
T ss_pred             cCC
Confidence            433

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=90.87  E-value=1.1  Score=31.67  Aligned_cols=46  Identities=13%  Similarity=0.294  Sum_probs=37.1

Q ss_pred             CCHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143          119 LNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTI  169 (243)
Q Consensus       119 Ls~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~  169 (243)
                      +|++=|.+||..++.++..|     .++.-+|++||.|-..|.++|..++.
T Consensus         3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e~~~   48 (81)
T 2jee_A            3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQH   48 (81)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            68888999999999999988     56777888888887777776666444

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=83.90  E-value=7.1  Score=25.64  Aligned_cols=52  Identities=25%  Similarity=0.318  Sum_probs=39.5

Q ss_pred             CCCCHHHHHHHHHHHHHHhHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 026143          117 GPLNSKELEQLERQLESSLKHVRS--TKTQYMLDQLSDLQNKEQLLLDTNRALT  168 (243)
Q Consensus       117 ~~Ls~~EL~~LE~qLe~sL~~IR~--rK~qlm~e~i~~Lk~ke~~L~eeN~~L~  168 (243)
                      ++.++.|..++-+-|-.+=.+|..  +-+.-+.+++.-++++.+.|+.+|..|+
T Consensus         8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr   61 (63)
T 2w6a_A            8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR   61 (63)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence            567888888888877777666642  2233456888889999999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	243
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	3e-37
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	1e-36
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	4e-36

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (310), Expect = 3e-37
 Identities = 38/71 (53%), Positives = 55/71 (77%), Gaps = 1/71 (1%)

Query: 2  GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 61
          GR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++  S+
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYA-ST 59

Query: 62 SMLKTLERYQK 72
           M K L +Y +
Sbjct: 60 DMDKVLLKYTE 70

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  122 bits (307), Expect = 1e-36
 Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 2  GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 61
           R ++E+K IENK  R VTF+KR++G++KKA+ELSVL   +V L++ S  G +Y F  + 
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFS-TP 61

Query: 62 SMLKTLERYQKCSYGAVEVNKP 83
               + + +  +     +N P
Sbjct: 62 KFEPIVTQQEGRNLIQACLNAP 83

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (304), Expect = 4e-36
 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           GR +++++ I+NK+ R  TF+KR+ G++KKAYELS L   +V L++ S  G +Y F  +
Sbjct: 2  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-T 60

Query: 61 SSMLKTLERYQKCSYGAVEVNKP 83
            +   +      +     +N P
Sbjct: 61 RKLQPMITSETGKALIQTCLNSP 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	243
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	100.0

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-39  Score=227.22  Aligned_cols=71  Identities=54%  Similarity=0.911  Sum_probs=69.2

Q ss_pred             CccccceeeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecccchhhHHHhhhhc
Q 026143            2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKC   73 (243)
Q Consensus         2 gR~Kv~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~~sm~~ileRY~~~   73 (243)
                      ||+||+|++|||+.+|+|||+|||+||||||+|||||||||||||||||+|++|+|+|++ ++.||+||+++
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~-~~~vl~ry~~~   71 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD-MDKVLLKYTEY   71 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSC-HHHHHHHHHHC
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCC-HHHHHHHHhcC
Confidence            899999999999999999999999999999999999999999999999999999999986 99999999874

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-37  Score=224.06  Aligned_cols=72  Identities=35%  Similarity=0.622  Sum_probs=69.7

Q ss_pred             CCccccceeeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecccchhhHHHhhhhc
Q 026143            1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKC   73 (243)
Q Consensus         1 MgR~Kv~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~~sm~~ileRY~~~   73 (243)
                      +||+||+|++|||+.+|+|||+|||+||||||+||||||||+||||||||+|++|+|+|++ ++.|++||+..
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~-~~~vi~~~~~~   73 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK-LQPMITSETGK   73 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGG-GHHHHSSHHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCC-HHHHHHHHHHH
Confidence            6999999999999999999999999999999999999999999999999999999999986 99999999864

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-37  Score=223.48  Aligned_cols=74  Identities=38%  Similarity=0.624  Sum_probs=70.8

Q ss_pred             CccccceeeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecccchhhHHHhhhhcccC
Q 026143            2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYG   76 (243)
Q Consensus         2 gR~Kv~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~~sm~~ileRY~~~~~~   76 (243)
                      ||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||||||||+|++|+|+||+ |+.||+||+..+..
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~-v~~vl~r~~~~~~~   76 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK-FEPIVTQQEGRNLI   76 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTT-TTHHHHSHHHHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCC-HHHHHHHHhcccHH
Confidence            899999999999999999999999999999999999999999999999999999999986 99999999876543