Citrus Sinensis ID: 026145

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
MEGGFGLAFNSVLPVARLRLPSNDKSFCFPLPRARINAELKELRVCTNRTCRRQGSMQILETLSSLAPPEVAVKSCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSSTY
Secondary Structure (PSIPRED)
cccccccHHccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHcHHHHHHHHHccccccHHHccccccccccccccccccccHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEccccccccccccccccHHcccccccccccccEEEEEEcccHHHHccHHHHHHHHHHcccccEEEEEcccccccccccEEEEEcccEEEcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEEEccHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHcccHHHccc
Coil and Loop (DISEMBL)
meggfglafnsvlpvarlrlpsndksfcfplpraRINAELKELRVCtnrtcrrqgsMQILETlsslappevavkscgclgrcgagpnlvalpdgvvvghcgtparASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAielkpfggihvlyKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTclqidpsirrsksfkvssty
Flexible Loop (DISEMBL)
MEGGFGLAFNSVLPVARLRLPSNDKSFCFPLPRARINAELKELRVCTNRTCRRQGSMQILetlsslappEVAVKSCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYStclqidpsirrsksfkvssty
Low Complexity Region (SEG)
MEGGFGLAFNSVLPVARLRLPSNDKSFCFPLPRARINAELKELRVCTNRTCRRQGSMQILETLSSLAPPEVAVKSCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMVLCGIKSDHDaaknlealalrkraeaefekanfSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSSTY
Disordered region (IsUnstruct)
****FGLAFNSVLPVARLRLPSNDKSFCFPLPRARINAELKELRVCTNRTCRRQGSMQILETLSSLAPPEVAVKSCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQI****************
Disordered Region (DISOPRED)
********FNSVLPVA**************************LRVCTNRTCRRQGSMQILETLSSLAPPEVAVKSCGCLG*CGAGPNLVALPDGVVVGHCGTP**********************LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSSTY
Disordered Region (DISEMBL)
MEGGFGLAFNSVLPVARLRLPSNDKSFCFPLPRARINAELKELRVCTNRTCRRQGSMQILETLSSLAPPEVAVKSCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRR**********
Disordered Region (DISPRO)
***GFGLAFNSVLPVARLRLPSNDKSFCFPLPRARINAELKELRVCTNRTCRRQGSMQILETLSSLAPPEVAVKSCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGGFGLAFNSVLPVARLRLPSNDKSFCFPLPRARINAELKELRVCTNRTCRRQGSMQILETLSSLAPPEVAVKSCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSSTY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	243	2.2.26 [Sep-21-2011]
Q54DA8	564	Protein STIP1 homolog OS=	yes	no	0.419	0.180	0.298	2e-08
Q99614	292	Tetratricopeptide repeat	yes	no	0.526	0.438	0.272	8e-08
P53042	499	Serine/threonine-protein	no	no	0.436	0.212	0.314	5e-07
Q60676	499	Serine/threonine-protein	yes	no	0.436	0.212	0.314	6e-07
Q91Z38	292	Tetratricopeptide repeat	no	no	0.432	0.359	0.259	8e-07
P53041	499	Serine/threonine-protein	no	no	0.436	0.212	0.314	8e-07
Q84K11	556	Serine/threonine-protein	N/A	no	0.469	0.205	0.271	2e-06
Q3ZBR5	292	Tetratricopeptide repeat	no	no	0.526	0.438	0.25	3e-06
Q32LM2	313	Small glutamine-rich tetr	no	no	0.469	0.364	0.285	3e-06
Q0JL44	367	Protein SGT1 homolog OS=O	no	no	0.353	0.234	0.329	4e-06

>sp|Q54DA8|STIP1_DICDI Protein STIP1 homolog OS=Dictyostelium discoideum GN=sti1 PE=3 SV=1

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 2/104 (1%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED 186
           +A   + +  A F   +++ A     QAIEL P    H+LY +R  + L +     AL D
Sbjct: 7   KATEFKNQGNAAFSSKDYNSAVKCFDQAIELDPSN--HILYSNRSASLLALDKNEDALTD 64

Query: 187 VREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
            ++A+EL P++++ Y+ + +    + +++ AEKS    L+IDP+
Sbjct: 65  AKKAIELKPDWSKGYLRETNALYKLGRFEEAEKSAEAGLKIDPT 108

Dictyostelium discoideum (taxid: 44689)

>sp|Q99614|TTC1_HUMAN Tetratricopeptide repeat protein 1 OS=Homo sapiens GN=TTC1 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 70/132 (53%), Gaps = 4/132 (3%)

Query: 108 EILMVLCGIKSDHDAAKNLE-ALALRKRAEAEFEKANFSEADGFLSQAIELKPF---GGI 163
           E L+ L    SD +  K  E +  L++    +F+K ++ EA+   S+A+E+ P       
Sbjct: 95  EYLIELEKNMSDEEKQKRREESTRLKEEGNEQFKKGDYIEAESSYSRALEMCPSCFQKER 154

Query: 164 HVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYST 223
            +L+ +R  AR+       A+ D  +A++L P+Y  A + + +++   D+ D A + Y +
Sbjct: 155 SILFSNRAAARMKQDKKEMAINDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKS 214

Query: 224 CLQIDPSIRRSK 235
            L+ DPSI +++
Sbjct: 215 ILEKDPSIHQAR 226

Homo sapiens (taxid: 9606)

>sp|P53042|PPP5_RAT Serine/threonine-protein phosphatase 5 OS=Rattus norvegicus GN=Ppp5c PE=2 SV=1

 Score = 54.7 bits (130), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
           A  L+ +A   F+  ++  A  F SQAIEL P   I+  Y +R LA L    +  AL D 
Sbjct: 28  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY--YGNRSLAYLRTECYGYALGDA 85

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK 235
             A+EL   Y + Y  +    +A+ ++ AA + Y T +++ P+ + +K
Sbjct: 86  TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPNDKDAK 133

May play a role in the regulation of RNA biogenesis and/or mitosis.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q60676|PPP5_MOUSE Serine/threonine-protein phosphatase 5 OS=Mus musculus GN=Ppp5c PE=2 SV=2

 Score = 54.7 bits (130), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
           A  L+ +A   F+  ++  A  F SQAIEL P  G  + Y +R LA L    +  AL D 
Sbjct: 28  AEELKTQANDYFKAKDYENAIKFYSQAIELNP--GNAIYYGNRSLAYLRTECYGYALGDA 85

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK 235
             A+EL   Y + Y  +    +A+ ++ AA + Y T +++ P+ + +K
Sbjct: 86  TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPNDKDAK 133

May play a role in the regulation of RNA biogenesis and/or mitosis.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q91Z38|TTC1_MOUSE Tetratricopeptide repeat protein 1 OS=Mus musculus GN=Ttc1 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 58/108 (53%), Gaps = 3/108 (2%)

Query: 131 LRKRAEAEFEKANFSEADGFLSQAIELKPF---GGIHVLYKDRCLARLTMGNFSAALEDV 187
           L++     F++ ++ EA+   SQA+++ P        VL+ +R  AR+       A+ D 
Sbjct: 119 LKEEGNERFKRGDYMEAESSYSQALQMCPACFQKDRSVLFSNRAAARMKQDKKETAITDC 178

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK 235
            +A++L P Y  A + + +++   D+ D A + Y + L+ DPS+ +++
Sbjct: 179 SKAIQLNPTYIRAILRRAELYEKTDKLDEALEDYKSVLEKDPSVHQAR 226

Mus musculus (taxid: 10090)

>sp|P53041|PPP5_HUMAN Serine/threonine-protein phosphatase 5 OS=Homo sapiens GN=PPP5C PE=1 SV=1

 Score = 54.3 bits (129), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 2/108 (1%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
           A  L+ +A   F+  ++  A  F SQAIEL P   I+  Y +R LA L    +  AL D 
Sbjct: 28  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY--YGNRSLAYLRTECYGYALGDA 85

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK 235
             A+EL   Y + Y  +    +A+ ++ AA + Y T +++ P  + +K
Sbjct: 86  TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAK 133

May play a role in the regulation of RNA biogenesis and/or mitosis. In vitro, dephosphorylates serine residues of skeletal muscle phosphorylase and histone H1.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q84K11|PPP5_SOLLC Serine/threonine-protein phosphatase 5 OS=Solanum lycopersicum GN=PP5 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 4/118 (3%)

Query: 113 LCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL 172
           + G+++++  A   E L  ++ A   F+   +S+A    +QAIEL   G   V Y +R  
Sbjct: 1   MPGMEAENSNASRAEEL--KQLANEAFKGHKYSQAIDLYTQAIELN--GENAVYYANRAF 56

Query: 173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
           A   +  + +A++D   A+E+ P Y++ Y  +G  +LAM ++  A K +    ++ P+
Sbjct: 57  AHTKLEEYGSAIQDGTRAIEIDPRYSKGYYRRGAAYLAMGKFKDALKDFQQVKKLCPN 114

Isoform 2 dephosphorylates phosphorylated phytochromes, with a preference toward Pfr forms, and enhances phytochrome-mediated photoresponses (By similarity). Can use para-nitrophenylphosphate (pNPP) and phosphorylated casein as substrate at pH 7.5 and 5.0.

Solanum lycopersicum (taxid: 4081)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q3ZBR5|TTC1_BOVIN Tetratricopeptide repeat protein 1 OS=Bos taurus GN=TTC1 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 68/132 (51%), Gaps = 4/132 (3%)

Query: 108 EILMVLCGIKSDHDAAKNLEALA-LRKRAEAEFEKANFSEADGFLSQAIELKPF---GGI 163
           E LM L     D +  +  E  + L++    +F+K ++ EA+   ++A++  P       
Sbjct: 95  EYLMELEKNMPDEEKKRRREESSRLKEEGNEQFKKGDYIEAESSYTRALQTCPSCFQKDR 154

Query: 164 HVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYST 223
            VL+ +R  AR+       A+ D  +A++L P+Y  A + + +++   D+ D A + Y +
Sbjct: 155 SVLFSNRAAARMKQEKKEMAISDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKS 214

Query: 224 CLQIDPSIRRSK 235
            L+ DPS+ +++
Sbjct: 215 ILEKDPSVHQAR 226

Bos taurus (taxid: 9913)

>sp|Q32LM2|SGTA_BOVIN Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Bos taurus GN=SGTA PE=2 SV=1

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 5/119 (4%)

Query: 118 SDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM 177
           S+ D+A   EA  L+     + +  NF  A  F  +AIEL P   ++  + +R  A   +
Sbjct: 84  SEEDSA---EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVY--FCNRAAAYSKL 138

Query: 178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKS 236
           GN++ A++D   A+ + P+Y++AY   G    +++++  A   Y   L++DP     KS
Sbjct: 139 GNYAGAVQDCERAICIDPSYSKAYGRMGLALSSLNKHTEAVAYYRKALELDPDNETYKS 197

Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity.

Bos taurus (taxid: 9913)

>sp|Q0JL44|SGT1_ORYSJ Protein SGT1 homolog OS=Oryza sativa subsp. japonica GN=SGT1 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 2/88 (2%)

Query: 131 LRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREA 190
           L  +A+A F   +F  A    +QAIE  P      LY DR  A + +GN++ A+ D  +A
Sbjct: 9   LESKAKAAFVDDDFELAAELYTQAIEASP--ATAELYADRAQAHIKLGNYTEAVADANKA 66

Query: 191 LELAPNYTEAYICQGDVFLAMDQYDAAE 218
           +EL P+  +AY+ +G   + +++Y  A+
Sbjct: 67  IELDPSMHKAYLRKGAACIRLEEYQTAK 94

Involved in basal disease resistance to bacterial blight (X.oryzae). May act as positive regulator of basal defense. Probably required for SCF-mediated ubiquitination, by coupling HSP90 to SCF complex for ubiquitination of HSP90 client proteins.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
225457464	250	PREDICTED: uncharacterized protein LOC10	0.938	0.912	0.656	5e-81
296088006	285	unnamed protein product [Vitis vinifera]	0.938	0.8	0.656	7e-81
224125836	204	predicted protein [Populus trichocarpa]	0.823	0.980	0.651	2e-73
449522246	232	PREDICTED: uncharacterized protein LOC10	0.814	0.853	0.658	2e-72
449439233	257	PREDICTED: uncharacterized protein LOC10	0.814	0.770	0.658	4e-72
255567303	290	chaperone binding protein, putative [Ric	0.864	0.724	0.576	2e-69
53749491	265	Putative TPR domain containing protein,	0.864	0.792	0.594	1e-68
334185420	244	tetratricopeptide repeat-containing prot	0.823	0.819	0.607	2e-68
145338641	236	tetratricopeptide repeat-containing prot	0.823	0.847	0.607	2e-68
356512940	237	PREDICTED: small glutamine-rich tetratri	0.868	0.890	0.657	1e-67

>gi|225457464|ref|XP_002265398.1| PREDICTED: uncharacterized protein LOC100265105 isoform 1 [Vitis vinifera] gi|359491828|ref|XP_003634332.1| PREDICTED: uncharacterized protein LOC100265105 isoform 2 [Vitis vinifera]

 Score =  306 bits (784), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 155/236 (65%), Positives = 183/236 (77%), Gaps = 8/236 (3%)

Query: 6   GLAFNSVLPVARLRLPSNDK---SFCFPLPRARINAELKELRVCTNRTCRRQGSMQILET 62
           G++F +  P+ +L    ND+   +  +   R R+ AE+ ELRVC NRTCRRQGS+Q LET
Sbjct: 4   GVSFLNASPIPQLLPLPNDRLSIARVYTSKRRRLRAEI-ELRVCVNRTCRRQGSLQTLET 62

Query: 63  LSSLAPPEVAVKSCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMVLCGIKSDHDA 122
           LS +A P+VAVKSCGCLGRCGAGPNLVALPDGV+VGHCGT ARA+E++M         DA
Sbjct: 63  LSGIASPDVAVKSCGCLGRCGAGPNLVALPDGVIVGHCGTAARAAEVMMSFVA----GDA 118

Query: 123 AKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSA 182
             +L ALALRKRAE E EK NFSEA+  LSQAI+LKP GGIH++YK R  ARLTMGN++ 
Sbjct: 119 QGSLAALALRKRAENELEKNNFSEAELLLSQAIDLKPSGGIHIIYKVRSSARLTMGNYAG 178

Query: 183 ALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFK 238
           ALED  EAL LAP Y EAYICQGD FLAMDQ+D AEKSYSTCL++DPSIRRSKSF+
Sbjct: 179 ALEDANEALTLAPRYPEAYICQGDAFLAMDQFDDAEKSYSTCLELDPSIRRSKSFR 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088006|emb|CBI35289.3| unnamed protein product [Vitis vinifera]

 Score =  306 bits (783), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 155/236 (65%), Positives = 183/236 (77%), Gaps = 8/236 (3%)

Query: 6   GLAFNSVLPVARLRLPSNDK---SFCFPLPRARINAELKELRVCTNRTCRRQGSMQILET 62
           G++F +  P+ +L    ND+   +  +   R R+ AE+ ELRVC NRTCRRQGS+Q LET
Sbjct: 39  GVSFLNASPIPQLLPLPNDRLSIARVYTSKRRRLRAEI-ELRVCVNRTCRRQGSLQTLET 97

Query: 63  LSSLAPPEVAVKSCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMVLCGIKSDHDA 122
           LS +A P+VAVKSCGCLGRCGAGPNLVALPDGV+VGHCGT ARA+E++M         DA
Sbjct: 98  LSGIASPDVAVKSCGCLGRCGAGPNLVALPDGVIVGHCGTAARAAEVMMSFVA----GDA 153

Query: 123 AKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSA 182
             +L ALALRKRAE E EK NFSEA+  LSQAI+LKP GGIH++YK R  ARLTMGN++ 
Sbjct: 154 QGSLAALALRKRAENELEKNNFSEAELLLSQAIDLKPSGGIHIIYKVRSSARLTMGNYAG 213

Query: 183 ALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFK 238
           ALED  EAL LAP Y EAYICQGD FLAMDQ+D AEKSYSTCL++DPSIRRSKSF+
Sbjct: 214 ALEDANEALTLAPRYPEAYICQGDAFLAMDQFDDAEKSYSTCLELDPSIRRSKSFR 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125836|ref|XP_002329729.1| predicted protein [Populus trichocarpa] gi|222870637|gb|EEF07768.1| predicted protein [Populus trichocarpa]

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 131/201 (65%), Positives = 164/201 (81%), Gaps = 1/201 (0%)

Query: 38  AELKELRVCTNRTCRRQGSMQILETLSSLAPPEVAVKSCGCLGRCGAGPNLVALPDGVVV 97
           AE +E+RVCTNRTCR+QGS Q LE ++ LAPP++ VKS GCLGRCG+GPN+  LP G++V
Sbjct: 5   AETQEIRVCTNRTCRKQGSFQTLEVVTDLAPPDITVKSSGCLGRCGSGPNVALLPQGIIV 64

Query: 98  GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIEL 157
            HCGT A+A++ +     + SD + +K+LEALALRK A+AE + ANFS+A+  LS AI+L
Sbjct: 65  NHCGTAAKAAQFMATAANV-SDGNISKSLEALALRKTAQAESDLANFSKAEELLSLAIDL 123

Query: 158 KPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAA 217
           +PFGGIH++YK R LARL M N+S ALED REAL LAP Y EAY+C+GDVF+AM++YDAA
Sbjct: 124 QPFGGIHIMYKYRSLARLAMRNYSGALEDAREALRLAPRYLEAYMCEGDVFMAMEEYDAA 183

Query: 218 EKSYSTCLQIDPSIRRSKSFK 238
           EKSY TCLQIDPSIRRSKSFK
Sbjct: 184 EKSYLTCLQIDPSIRRSKSFK 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522246|ref|XP_004168138.1| PREDICTED: uncharacterized protein LOC101230528 [Cucumis sativus]

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 131/199 (65%), Positives = 158/199 (79%), Gaps = 1/199 (0%)

Query: 41  KELRVCTNRTCRRQGSMQILETLSSLAPPEVAVKSCGCLGRCGAGPNLVALPDGVVVGHC 100
           +E+RVCTNRTCRRQGS   LE L++LAPP + V   GCLG+CGAGPN+  LPDG VVGHC
Sbjct: 18  QEIRVCTNRTCRRQGSFHALEILNALAPPNIVVNPSGCLGKCGAGPNVAVLPDGFVVGHC 77

Query: 101 GTPARASEILMVLCGIKSDH-DAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKP 159
           GTPARA+++++ L G  SD    +K+LEALALRKRA+ E E  NFS+A+  LSQAI+LKP
Sbjct: 78  GTPARAADLIIQLSGQDSDSVGISKSLEALALRKRAQCELEDGNFSQAELLLSQAIDLKP 137

Query: 160 FGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEK 219
            GGIH+++KDR + RL +GN S ALED  EAL +AP Y EAYICQGD FLAMD +D+AE 
Sbjct: 138 CGGIHIIFKDRSIVRLALGNHSGALEDANEALRVAPQYLEAYICQGDAFLAMDHFDSAEI 197

Query: 220 SYSTCLQIDPSIRRSKSFK 238
           SYST L+IDPSIRRSKSFK
Sbjct: 198 SYSTALEIDPSIRRSKSFK 216

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439233|ref|XP_004137391.1| PREDICTED: uncharacterized protein LOC101213093 [Cucumis sativus]

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 131/199 (65%), Positives = 158/199 (79%), Gaps = 1/199 (0%)

Query: 41  KELRVCTNRTCRRQGSMQILETLSSLAPPEVAVKSCGCLGRCGAGPNLVALPDGVVVGHC 100
           +E+RVCTNRTCRRQGS   LE L++LAPP + V   GCLG+CGAGPN+  LPDG VVGHC
Sbjct: 43  QEIRVCTNRTCRRQGSFHALEILNALAPPNIVVNPSGCLGKCGAGPNVAVLPDGFVVGHC 102

Query: 101 GTPARASEILMVLCGIKSDH-DAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKP 159
           GTPARA+++++ L G  SD    +K+LEALALRKRA+ E E  NFS+A+  LSQAI+LKP
Sbjct: 103 GTPARAADLIIQLSGQDSDSVGISKSLEALALRKRAQCELEDGNFSQAELLLSQAIDLKP 162

Query: 160 FGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEK 219
            GGIH+++KDR + RL +GN S ALED  EAL +AP Y EAYICQGD FLAMD +D+AE 
Sbjct: 163 CGGIHIIFKDRSIVRLALGNHSGALEDANEALRVAPQYLEAYICQGDAFLAMDHFDSAEI 222

Query: 220 SYSTCLQIDPSIRRSKSFK 238
           SYST L+IDPSIRRSKSFK
Sbjct: 223 SYSTALEIDPSIRRSKSFK 241

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567303|ref|XP_002524632.1| chaperone binding protein, putative [Ricinus communis] gi|223536101|gb|EEF37757.1| chaperone binding protein, putative [Ricinus communis]

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 132/229 (57%), Positives = 159/229 (69%), Gaps = 19/229 (8%)

Query: 29  FPLPRARINAELK---------------ELRVCTNRTCRRQGSMQILETLSSLAPPEVAV 73
           FPL  +R N ++K               E+RVCTNRTCRRQGSMQ LE +  L+PP V+V
Sbjct: 13  FPLSSSRNNKKIKRKGNPRFPTVSKMDDEIRVCTNRTCRRQGSMQTLEIMRDLSPPNVSV 72

Query: 74  KSCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMVL----CGIKSDHDAAKNLEAL 129
            SCGCLGRCGAGPNL  LP GV++GHC T   A+ ++         +  D      L AL
Sbjct: 73  NSCGCLGRCGAGPNLAFLPQGVIIGHCATATSAASVIARHYNNGAAVNDDSSIRSVLIAL 132

Query: 130 ALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVRE 189
           ALRKRAEAE ++ANFS+AD  LSQAI+LKPFGG+H++YK R   RL MGN+  ALED RE
Sbjct: 133 ALRKRAEAEIDQANFSQADLLLSQAIQLKPFGGLHIIYKLRSRVRLAMGNYLGALEDARE 192

Query: 190 ALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFK 238
            L LAP Y EAY+C+GDVF+ M+QYDAAEKSYS CLQI+P+I RSK FK
Sbjct: 193 TLNLAPQYPEAYMCEGDVFMEMEQYDAAEKSYSMCLQINPTICRSKPFK 241

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|53749491|gb|AAU90344.1| Putative TPR domain containing protein, identical [Solanum demissum]

 Score =  265 bits (678), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 135/227 (59%), Positives = 162/227 (71%), Gaps = 17/227 (7%)

Query: 29  FPLPRA------RINA--------ELK-ELRVCTNRTCRRQGSMQILETLSSLAPPEVAV 73
           FPLP++      RI A        E K E+R+CT R CR+QGS+  L+ LS +APP VAV
Sbjct: 23  FPLPKSKPINDTRIKASSVKEEEVERKIEIRLCTERACRKQGSLDTLQVLSGIAPPFVAV 82

Query: 74  KSCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMVLCGIKSD--HDAAKNLEALAL 131
            SCGCLGRCGAGPN+V LP  V V H GTP RA+E +  +C  + D   ++ ++LEALAL
Sbjct: 83  NSCGCLGRCGAGPNVVVLPGAVYVKHVGTPTRAAETMAFVCLGRDDVEGESRRSLEALAL 142

Query: 132 RKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREAL 191
           RKRAE E    NFSEA G LSQAI LKPFGG+H++ KDRC A L MGN + ALED +EAL
Sbjct: 143 RKRAEDEMGNGNFSEAHGLLSQAIALKPFGGVHIMLKDRCAAELAMGNLAEALEDSKEAL 202

Query: 192 ELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFK 238
            +APNY E YICQGDV +A+D  DAAEKSYS  L++DPSIRRSKSFK
Sbjct: 203 YIAPNYPEGYICQGDVLMALDHVDAAEKSYSMALELDPSIRRSKSFK 249

Source: Solanum demissum

Species: Solanum demissum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334185420|ref|NP_001189919.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332642468|gb|AEE75989.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 124/204 (60%), Positives = 157/204 (76%), Gaps = 4/204 (1%)

Query: 39  ELKELRVCTNRTCRRQGSMQILETLSSLAPPEVAVKSCGCLGRCGAGPNLVALPDGVVVG 98
           ++KE+RVCTNRTCRRQGS QILETL++LAPPE+ V  C CLGRCG+GPNLVALP G+++ 
Sbjct: 17  QVKEIRVCTNRTCRRQGSFQILETLTALAPPELRVTHCACLGRCGSGPNLVALPQGLILR 76

Query: 99  HCGTPARASEILMVLCG----IKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQA 154
           HC TP+RA+EIL  LCG      S       L ALAL   A ++ +  NFSEA+  L+QA
Sbjct: 77  HCATPSRAAEILFSLCGDGREASSSSAVTDALTALALTNNALSQIDAGNFSEAEALLTQA 136

Query: 155 IELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQY 214
           +ELKP+GG+H ++K R +A+L M ++S ALED+ +AL LAPNY+E YICQGDV++A  QY
Sbjct: 137 LELKPYGGLHRIFKHRSVAKLGMLDYSGALEDISQALALAPNYSEPYICQGDVYVAKGQY 196

Query: 215 DAAEKSYSTCLQIDPSIRRSKSFK 238
           D AEKSY TCL+IDPS+RRSK FK
Sbjct: 197 DLAEKSYLTCLEIDPSLRRSKPFK 220

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145338641|ref|NP_188394.2| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] gi|9294156|dbj|BAB02058.1| unnamed protein product [Arabidopsis thaliana] gi|332642467|gb|AEE75988.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 124/204 (60%), Positives = 157/204 (76%), Gaps = 4/204 (1%)

Query: 39  ELKELRVCTNRTCRRQGSMQILETLSSLAPPEVAVKSCGCLGRCGAGPNLVALPDGVVVG 98
           ++KE+RVCTNRTCRRQGS QILETL++LAPPE+ V  C CLGRCG+GPNLVALP G+++ 
Sbjct: 17  QVKEIRVCTNRTCRRQGSFQILETLTALAPPELRVTHCACLGRCGSGPNLVALPQGLILR 76

Query: 99  HCGTPARASEILMVLCG----IKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQA 154
           HC TP+RA+EIL  LCG      S       L ALAL   A ++ +  NFSEA+  L+QA
Sbjct: 77  HCATPSRAAEILFSLCGDGREASSSSAVTDALTALALTNNALSQIDAGNFSEAEALLTQA 136

Query: 155 IELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQY 214
           +ELKP+GG+H ++K R +A+L M ++S ALED+ +AL LAPNY+E YICQGDV++A  QY
Sbjct: 137 LELKPYGGLHRIFKHRSVAKLGMLDYSGALEDISQALALAPNYSEPYICQGDVYVAKGQY 196

Query: 215 DAAEKSYSTCLQIDPSIRRSKSFK 238
           D AEKSY TCL+IDPS+RRSK FK
Sbjct: 197 DLAEKSYLTCLEIDPSLRRSKPFK 220

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512940|ref|XP_003525172.1| PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein alpha-like [Glycine max]

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 140/213 (65%), Positives = 163/213 (76%), Gaps = 2/213 (0%)

Query: 26  SFCFPLPRARINAELKELRVCTNRTCRRQGSMQILETLSSLAPPEVAVKSCGCLGRCGAG 85
           S   P P  ++ A+  E+RVCTNRTCRRQGS Q LETLS LAPP VAVKSCGCLGRCG G
Sbjct: 11  SHVAPSPPVKVKAQ--EIRVCTNRTCRRQGSFQTLETLSGLAPPNVAVKSCGCLGRCGGG 68

Query: 86  PNLVALPDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFS 145
           PNLV LPDG++VGHCGT ARA+E++  L      HD    L+ALALRKRAE EF K NF+
Sbjct: 69  PNLVVLPDGLIVGHCGTAARAAEVIATLFAGAGGHDPKTCLDALALRKRAEIEFAKRNFT 128

Query: 146 EADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG 205
           EA+  LSQAI+LKPFGGIH+ +K R   RL +GN+S ALED  EAL LAP Y+EAYICQG
Sbjct: 129 EAELLLSQAIDLKPFGGIHITFKCRSFVRLELGNYSGALEDAEEALALAPGYSEAYICQG 188

Query: 206 DVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFK 238
           D FLA++++D AE+SYS  L IDPSIR SKSFK
Sbjct: 189 DAFLALNKFDLAEQSYSASLVIDPSIRHSKSFK 221

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
TAIR|locus:2026197	571	Hop2 "Hop2" [Arabidopsis thali	0.370	0.157	0.336	8.8e-07
TAIR|locus:2139109	558	Hop3 "AT4G12400" [Arabidopsis	0.341	0.148	0.329	1.1e-06
DICTYBASE|DDB_G0292404	564	sti1 "stress-induced-phosphopr	0.312	0.134	0.346	8.3e-06
FB|FBgn0262719	2444	CG43163 [Drosophila melanogast	0.316	0.031	0.354	3.6e-05
ZFIN|ZDB-GENE-030131-8811	320	zgc:55741 "zgc:55741" [Danio r	0.374	0.284	0.291	3.8e-05
RGD|1359604	292	Ttc1 "tetratricopeptide repeat	0.370	0.308	0.290	7.2e-05
UNIPROTKB|Q99614	292	TTC1 "Tetratricopeptide repeat	0.370	0.308	0.290	9.4e-05
MGI|MGI:1914077	292	Ttc1 "tetratricopeptide repeat	0.370	0.308	0.290	9.4e-05
UNIPROTKB|H9L1A6	313	SGTA "Uncharacterized protein"	0.362	0.281	0.3	0.00011
TAIR|locus:2034620	572	Hop1 "Hop1" [Arabidopsis thali	0.341	0.145	0.305	0.00013

TAIR|locus:2026197 Hop2 "Hop2" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 8.8e-07, P = 8.8e-07
 Identities = 31/92 (33%), Positives = 51/92 (55%)

Query:   145 SEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQ 204
             + A    + AI L P    HVL+ +R  A  ++ ++  AL D ++ +EL P++ + Y   
Sbjct:    19 NSAVNHFTDAINLTPTN--HVLFSNRSAAHASLNHYDEALSDAKKTVELKPDWGKGYSRL 76

Query:   205 GDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKS 236
             G   L ++Q+D A ++YS  L+IDPS    KS
Sbjct:    77 GAAHLGLNQFDEAVEAYSKGLEIDPSNEGLKS 108

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2139109 Hop3 "AT4G12400" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 28/85 (32%), Positives = 48/85 (56%)

Query:   152 SQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAM 211
             ++AI L P    H+LY +R  +  ++  +  AL D ++ +EL P++++ Y   G  F+ +
Sbjct:    26 TEAINLSPTN--HILYSNRSASYASLHRYEEALSDAKKTIELKPDWSKGYSRLGAAFIGL 83

Query:   212 DQYDAAEKSYSTCLQIDPSIRRSKS 236
              ++D A  SY   L+IDPS    KS
Sbjct:    84 SKFDEAVDSYKKGLEIDPSNEMLKS 108

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

DICTYBASE|DDB_G0292404 sti1 "stress-induced-phosphoprotein 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 129 (50.5 bits), Expect = 8.3e-06, P = 8.3e-06
 Identities = 27/78 (34%), Positives = 47/78 (60%)

Query:   153 QAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMD 212
             QAIEL P    H+LY +R  + L +     AL D ++A+EL P++++ Y+ + +    + 
Sbjct:    33 QAIELDPSN--HILYSNRSASLLALDKNEDALTDAKKAIELKPDWSKGYLRETNALYKLG 90

Query:   213 QYDAAEKSYSTCLQIDPS 230
             +++ AEKS    L+IDP+
Sbjct:    91 RFEEAEKSAEAGLKIDPT 108

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0030544 "Hsp70 protein binding" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0262719 CG43163 [Drosophila melanogaster (taxid:7227)]

 Score = 130 (50.8 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 28/79 (35%), Positives = 46/79 (58%)

Query:   152 SQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAM 211
             + A++L P  G H+LY +R  A L  G F+AAL+D  +A +L P + +AY  QG     +
Sbjct:    47 TDALQLDP--GNHILYSNRSAALLKQGQFTAALQDATQARDLCPQWPKAYFRQGVALQCL 104

Query:   212 DQYDAAEKSYSTCLQIDPS 230
              +Y  A  ++++ L  +PS
Sbjct:   105 GRYGEALAAFASGLAQEPS 123

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-030131-8811 zgc:55741 "zgc:55741" [Danio rerio (taxid:7955)]

 Score = 120 (47.3 bits), Expect = 3.8e-05, P = 3.8e-05
 Identities = 28/96 (29%), Positives = 53/96 (55%)

Query:   145 SEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQ 204
             S A  F S+AI+L P   ++  + +R  A   +GN++ A++D   A+ +  NY++AY   
Sbjct:   108 SAAVEFYSKAIQLNPQNAVY--FCNRAAAYSKLGNYAGAVQDCERAIGIDANYSKAYGRM 165

Query:   205 GDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS 240
             G    ++++Y  A   Y   L++DP    + ++KV+
Sbjct:   166 GLALASLNKYSEAVSYYKKALELDPD---NDTYKVN 198

GO:0008150 "biological_process" evidence=ND

RGD|1359604 Ttc1 "tetratricopeptide repeat domain 1" [Rattus norvegicus (taxid:10116)]

 Score = 117 (46.2 bits), Expect = 7.2e-05, P = 7.2e-05
 Identities = 27/93 (29%), Positives = 51/93 (54%)

Query:   146 EADGFLSQAIELKP--FGGIH-VLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYI 202
             EA+   SQA+++ P  F     VL+ +R  AR+       A+ D  +A++L P Y  A +
Sbjct:   134 EAESSYSQALQMCPACFQKDRSVLFSNRAAARMKQDKKEMAITDCSKAIQLNPTYIRAIL 193

Query:   203 CQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK 235
              + +++   D+ D A + Y + L+ DPS+ +++
Sbjct:   194 RRAELYEKTDKLDEALEDYKSILETDPSVHQAR 226

GO:0005515 "protein binding" evidence=IPI

GO:0005778 "peroxisomal membrane" evidence=IEA;ISO

UNIPROTKB|Q99614 TTC1 "Tetratricopeptide repeat protein 1" [Homo sapiens (taxid:9606)]

 Score = 116 (45.9 bits), Expect = 9.4e-05, P = 9.4e-05
 Identities = 27/93 (29%), Positives = 52/93 (55%)

Query:   146 EADGFLSQAIELKP--FGGIH-VLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYI 202
             EA+   S+A+E+ P  F     +L+ +R  AR+       A+ D  +A++L P+Y  A +
Sbjct:   134 EAESSYSRALEMCPSCFQKERSILFSNRAAARMKQDKKEMAINDCSKAIQLNPSYIRAIL 193

Query:   203 CQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK 235
              + +++   D+ D A + Y + L+ DPSI +++
Sbjct:   194 RRAELYEKTDKLDEALEDYKSILEKDPSIHQAR 226

GO:0005515 "protein binding" evidence=IPI

GO:0005778 "peroxisomal membrane" evidence=IDA

GO:0006457 "protein folding" evidence=NAS

GO:0051082 "unfolded protein binding" evidence=NAS

MGI|MGI:1914077 Ttc1 "tetratricopeptide repeat domain 1" [Mus musculus (taxid:10090)]

 Score = 116 (45.9 bits), Expect = 9.4e-05, P = 9.4e-05
 Identities = 27/93 (29%), Positives = 51/93 (54%)

Query:   146 EADGFLSQAIELKP--FGGIH-VLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYI 202
             EA+   SQA+++ P  F     VL+ +R  AR+       A+ D  +A++L P Y  A +
Sbjct:   134 EAESSYSQALQMCPACFQKDRSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAIL 193

Query:   203 CQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK 235
              + +++   D+ D A + Y + L+ DPS+ +++
Sbjct:   194 RRAELYEKTDKLDEALEDYKSVLEKDPSVHQAR 226

GO:0003674 "molecular_function" evidence=ND

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|H9L1A6 SGTA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 116 (45.9 bits), Expect = 0.00011, P = 0.00011
 Identities = 27/90 (30%), Positives = 47/90 (52%)

Query:   147 ADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGD 206
             A  F  +AIEL P   ++  + +R  A   +GN++ A+ D   A+ + PNY++AY   G 
Sbjct:   109 AVSFYGKAIELNPSNAVY--FCNRAAAYSKLGNYAGAVRDCERAIGIDPNYSKAYGRMGL 166

Query:   207 VFLAMDQYDAAEKSYSTCLQIDPSIRRSKS 236
                +++++  A   Y   L++DP     KS
Sbjct:   167 ALSSLNKHTEAVVYYKKALELDPDNDTYKS 196

GO:0005737 "cytoplasm" evidence=IEA

TAIR|locus:2034620 Hop1 "Hop1" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 0.00013, P = 0.00013
 Identities = 26/85 (30%), Positives = 46/85 (54%)

Query:   152 SQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAM 211
             ++AI L P    HVL+ +R  A  ++  ++ AL D +E ++L P + + Y   G   L +
Sbjct:    26 TEAIALAPTN--HVLFSNRSAAHASLHQYAEALSDAKETIKLKPYWPKGYSRLGAAHLGL 83

Query:   212 DQYDAAEKSYSTCLQIDPSIRRSKS 236
             +Q++ A  +Y   L +DP+    KS
Sbjct:    84 NQFELAVTAYKKGLDVDPTNEALKS 108

GO:0005737 "cytoplasm" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	243
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-15
cd02980	77	cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2F	7e-15
pfam13414	69	pfam13414, TPR_11, TPR repeat	9e-09
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	9e-08
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-07
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	6e-07
cd03064	80	cd03064, TRX_Fd_NuoE, TRX-like [2Fe-2S] Ferredoxin	1e-06
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	4e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	3e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	4e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	1e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-04
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	2e-04
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	2e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	3e-04
pfam01257	145	pfam01257, Complex1_24kDa, Respiratory-chain NADH	3e-04
cd03082	72	cd03082, TRX_Fd_NuoE_W_FDH_beta, TRX-like [2Fe-2S]	6e-04
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	9e-04
PRK07571	169	PRK07571, PRK07571, bidirectional hydrogenase comp	0.001
COG2956	389	COG2956, COG2956, Predicted N-acetylglucosaminyl t	0.002
COG3411	64	COG3411, COG3411, Ferredoxin [Energy production an	0.002
COG2976	207	COG2976, COG2976, Uncharacterized protein conserve	0.003
PRK11189	296	PRK11189, PRK11189, lipoprotein NlpI; Provisional	0.003
pfam13181	34	pfam13181, TPR_8, Tetratricopeptide repeat	0.003
COG1905	160	COG1905, NuoE, NADH:ubiquinone oxidoreductase 24 k	0.003
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	0.004
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	0.004

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 68.6 bits (168), Expect = 4e-15
 Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 2/101 (1%)

Query: 130 ALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVRE 189
           AL       ++  ++ EA  +  +A+EL P       Y +   A   +G +  ALED  +
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDP--DNADAYYNLAAAYYKLGKYEEALEDYEK 59

Query: 190 ALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
           ALEL P+  +AY   G  +  + +Y+ A ++Y   L++DP+
Sbjct: 60  ALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|239278 cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE)

 Score = 67.3 bits (165), Expect = 7e-15
 Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 6/73 (8%)

Query: 43  LRVCTNRTCRRQGSMQILETLSSLAPP-----EVAVKSCGCLGRCGAGPNLVALPDGVVV 97
           + VCT   C  +G+ ++LE L            V V+  GCLG CG  P +V  PDGV  
Sbjct: 3   ILVCTGTACGLRGAEELLEALEKELGIRGGDGRVTVERVGCLGACGLAPVVVVYPDGVWY 62

Query: 98  GHCGTPARASEIL 110
           G   TP    EI+
Sbjct: 63  GRV-TPEDVEEIV 74

TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers. Length = 77

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 50.4 bits (121), Expect = 9e-09
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 165 VLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAM-DQYDAAEKSYST 223
              K+   A   +G++  A+E   +ALEL P+  EAY      +L +   Y+ A +    
Sbjct: 4   EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63

Query: 224 CLQIDP 229
            L++DP
Sbjct: 64  ALELDP 69

Length = 69

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 51.7 bits (124), Expect = 9e-08
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 6/96 (6%)

Query: 131 LRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREA 190
           L  +A+  F   +F+ A    +QAI+L P      LY DR  A + +GNF+ A+ D  +A
Sbjct: 5   LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA--ELYADRAQANIKLGNFTEAVADANKA 62

Query: 191 LELAPNYTEAYICQGDVFLAMDQYDAA----EKSYS 222
           +EL P+  +AY+ +G   + +++Y  A    EK  S
Sbjct: 63  IELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGAS 98

Length = 356

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMG-NFSAALE 185
            A AL+    A F+  ++ EA     +A+EL P       Y +  LA L +G ++  ALE
Sbjct: 2   NAEALKNLGNALFKLGDYDEAIEAYEKALELDP--DNAEAYYNLALAYLKLGKDYEEALE 59

Query: 186 DVREALELAP 195
           D+ +ALEL P
Sbjct: 60  DLEKALELDP 69

Length = 69

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 49.1 bits (115), Expect = 6e-07
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 121 DAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNF 180
           D   N  A AL            + EA   L +A++L P         +  L  L +G +
Sbjct: 160 DPELNELAEALLALGALLEALGRYEEALELLEKALKLNP-DDDAEALLNLGLLYLKLGKY 218

Query: 181 SAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
             ALE   +ALEL P+  EA      + L + +Y+ A ++    L++DP 
Sbjct: 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268

Length = 291

>gnl|CDD|239362 cd03064, TRX_Fd_NuoE, TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 12/77 (15%)

Query: 43  LRVCTNRTCRRQGSMQILETLSSL---------APPEVAVKSCGCLGRCGAGPNLVALPD 93
           +RVCT   C  +G+  +LE L                  ++   CLG C   P  V + +
Sbjct: 4   IRVCTGTACHLRGAEALLEALEKKLGIKPGETTPDGRFTLEEVECLGACDLAP--VMMIN 61

Query: 94  GVVVGHCGTPARASEIL 110
             V G   TP +   IL
Sbjct: 62  DDVYGRL-TPEKVDAIL 77

It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] cluster and also binds the NADH substrate and FMN. Length = 80

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 46.9 bits (111), Expect = 4e-06
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 2/103 (1%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED 186
           EA+AL  R   +  K    EA   LS++IEL P   +   Y  R    L +G+   A ED
Sbjct: 330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDP--RVTQSYIKRASMNLELGDPDKAEED 387

Query: 187 VREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
             +AL+L     + Y  +  +     ++  A K Y   + +DP
Sbjct: 388 FDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP 430

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 14/126 (11%)

Query: 116 IKSDHDAAKNLEALALR---KRAEAEFEKA-------NFSEADGFLSQAIELKP-FGGIH 164
                + A+     AL    +   A+   A        F EA   + + +   P      
Sbjct: 137 GLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDAL 196

Query: 165 VLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTC 224
           +L  D  L+    GN   AL   R+A+ L PN     +    + +   +++ AEK     
Sbjct: 197 LLKGDLLLSL---GNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADAL 253

Query: 225 LQIDPS 230
           L+  P+
Sbjct: 254 LKKAPN 259

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 43.3 bits (100), Expect = 4e-05
 Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 3/131 (2%)

Query: 116 IKSDHDAAKNLEALALRKRAEAEFEKA-NFSEADGFLSQAIELKPFGGIHVLYKDRCLAR 174
           I  +  A    EALAL +   A  E     +EA   L +A+EL P   +  L     LA 
Sbjct: 10  ILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALAL 69

Query: 175 LTMGNFSAALEDVREALE--LAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIR 232
           L +G    ALE + +ALE  L PN  EA +  G +  A+ +Y+ A +     L +DP   
Sbjct: 70  LKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD 129

Query: 233 RSKSFKVSSTY 243
            +++       
Sbjct: 130 LAEALLALGAL 140

Length = 291

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 4/112 (3%)

Query: 123 AKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSA 182
                A AL            + EA   L +A+ L P   +             +G++  
Sbjct: 90  LLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYE-LGDYEE 148

Query: 183 ALEDVREALELAP---NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI 231
           ALE   +ALEL P      EA +  G +  A+ +Y+ A +     L+++P  
Sbjct: 149 ALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD 200

Length = 291

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED 186
            A A    A A ++   + EA     +A+EL P       Y +  LA   +G +  ALE 
Sbjct: 33  NADAYYNLAAAYYKLGKYEEALEDYEKALELDP--DNAKAYYNLGLAYYKLGKYEEALEA 90

Query: 187 VREALELAPN 196
             +ALEL PN
Sbjct: 91  YEKALELDPN 100

Length = 100

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 16/62 (25%), Positives = 22/62 (35%)

Query: 169 DRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID 228
               A L  G++  AL  +  AL   P   EA +  G+  L   +   A       L  D
Sbjct: 2   ALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61

Query: 229 PS 230
           P 
Sbjct: 62  PD 63

Length = 65

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 16/58 (27%), Positives = 33/58 (56%)

Query: 172 LARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           L  L  G+++ A +++ +ALE  P+Y  A++ +   +  + + D A++SY   L + P
Sbjct: 43  LGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP 100

Length = 250

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 1/115 (0%)

Query: 120 HDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN 179
                +  A  L   A A  +     EA   L +A+EL+    +     +  L    +G 
Sbjct: 51  ELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGK 110

Query: 180 FSAALEDVREALELAPNYTEAYICQGD-VFLAMDQYDAAEKSYSTCLQIDPSIRR 233
           +  ALE + +AL L P+   A           +  Y+ A + Y   L++DP +  
Sbjct: 111 YEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNE 165

Length = 291

>gnl|CDD|216393 pfam01257, Complex1_24kDa, Respiratory-chain NADH dehydrogenase 24 Kd subunit

 Score = 39.7 bits (94), Expect = 3e-04
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 12/77 (15%)

Query: 43  LRVCTNRTCRRQGSMQILETLSS---LAPPEVA------VKSCGCLGRCGAGPNLVALPD 93
           ++VCT   C  +GS ++LE L     + P E        ++   CLG CG  P  V   +
Sbjct: 68  IQVCTTTPCHLRGSDELLEALEEKLGIKPGETTPDGKFTLEEVECLGACGNAP--VMQIN 125

Query: 94  GVVVGHCGTPARASEIL 110
               G   TP +  EIL
Sbjct: 126 DDYYGDL-TPEKVDEIL 141

Length = 145

>gnl|CDD|239380 cd03082, TRX_Fd_NuoE_W_FDH_beta, TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens

 Score = 37.0 bits (86), Expect = 6e-04
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 8/59 (13%)

Query: 43  LRVCTNRTCRRQGSMQILETL-SSLAPPEVAVKSCGCLGRCGAGPNLVALPDGVVVGHC 100
           +RVC + +C   G+ ++L  L + L P  V V    C+GRC   P         +VG  
Sbjct: 4   VRVCDSLSCAMAGAEELLAALEAGLGPEGVRVVRAPCVGRCERAP-------AALVGQR 55

W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependent oxidation of formate. Length = 72

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 35.5 bits (83), Expect = 9e-04
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 199 EAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
           EA    G+ +L +  YD A + Y   L++DP+
Sbjct: 2   EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|236053 PRK07571, PRK07571, bidirectional hydrogenase complex protein HoxE; Reviewed

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 12/73 (16%)

Query: 45  VCTNRTCRRQGSMQILETL---------SSLAPPEVAVKSCGCLGRCGAGPNLVALPDGV 95
           VCT   C  +GS  ILE L          + A  ++++ +  CLG CG  P +V   DG 
Sbjct: 93  VCTGTACYVKGSAAILEDLENELGIKAGETTADGKLSLLTARCLGACGIAPAVVF--DGK 150

Query: 96  VVGHCGTPARASE 108
           V G   TP    E
Sbjct: 151 VAGKQ-TPESVLE 162

Length = 169

>gnl|CDD|225504 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 172 LARLTMG--NFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           LA+  +   +   A E +++AL+       A I  G V LA   Y  A ++    L+ +P
Sbjct: 186 LAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNP 245

Length = 389

>gnl|CDD|225945 COG3411, COG3411, Ferredoxin [Energy production and conversion]

 Score = 35.5 bits (82), Expect = 0.002
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 69  PEVAVKSCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEIL 110
             + V   GCLG C  GP LV  P+GV       P  A  I+
Sbjct: 1   GSIRVTRTGCLGVCQDGPVLVVYPEGVWYTRV-DPEDARRIV 41

Length = 64

>gnl|CDD|225523 COG2976, COG2976, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 27/115 (23%), Positives = 41/115 (35%), Gaps = 24/115 (20%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAI------ELKPFGGIHVLYKDRCLARLTMGNFS 181
            LA  + A+AE E  N  +A+  L QA+       LK             LA L +    
Sbjct: 89  VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKA------------LAALRLARVQ 136

Query: 182 AALEDVREALEL-----APNYTEAY-ICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
              +    AL+        ++       +GD+ LA      A  +Y   L+ D S
Sbjct: 137 LQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191

Length = 207

>gnl|CDD|236875 PRK11189, PRK11189, lipoprotein NlpI; Provisional

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 18/87 (20%)

Query: 152 SQAIELKP-------FGGIHVLYKDRCLARLT-MGNFSAALEDVREALELAPNYTEAYIC 203
           SQA+ L+P       + GI+          LT  GNF AA E     LEL P Y  AY+ 
Sbjct: 88  SQALALRPDMADAYNYLGIY----------LTQAGNFDAAYEAFDSVLELDPTYNYAYLN 137

Query: 204 QGDVFLAMDQYDAAEKSYSTCLQIDPS 230
           +G       +Y+ A+       Q DP+
Sbjct: 138 RGIALYYGGRYELAQDDLLAFYQDDPN 164

Length = 296

>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat

 Score = 34.0 bits (79), Expect = 0.003
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 199 EAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
            AY   G ++L +  Y+ A++ Y   L++DP
Sbjct: 2   RAYYLLGQIYLQLGDYEEAKEYYEKALELDP 32

Length = 34

>gnl|CDD|224817 COG1905, NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 14/78 (17%)

Query: 43  LRVCTNRTCRRQGSMQILETLSS---LAPPEVA------VKSCGCLGRCGAGPNLVALPD 93
           +RVCT   C  +GS  +L+ L     + P E        ++   CLG CG  P ++   +
Sbjct: 80  IRVCTGTACHLKGSEALLKALEKKLGIKPGETTADGKFTLEPVECLGACGQAPVVMI--N 137

Query: 94  GVVVGHCG-TPARASEIL 110
             V  +   TP +  EIL
Sbjct: 138 DDV--YGRLTPEKLEEIL 153

Length = 160

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 38.0 bits (88), Expect = 0.004
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
           A  L+++    +   +F++A    S+AIE KP     V Y +R      +G++   +ED 
Sbjct: 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP---DPVYYSNRAACHNALGDWEKVVEDT 183

Query: 188 REALELAPNYTEA 200
             ALEL P+Y++A
Sbjct: 184 TAALELDPDYSKA 196

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 33.5 bits (78), Expect = 0.004
 Identities = 9/32 (28%), Positives = 19/32 (59%)

Query: 199 EAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
           +A    G+ +L + +YD A + Y   L+++P+
Sbjct: 2   KALYNLGNAYLKLGKYDEALEYYEKALELNPN 33

Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
PRK15359	144	type III secretion system chaperone protein SscB;	99.8
KOG0553	304	consensus TPR repeat-containing protein [General f	99.8
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.74
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.74
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.73
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.73
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.71
PRK11189	296	lipoprotein NlpI; Provisional	99.71
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.7
KOG1126	638	consensus DNA-binding cell division cycle control	99.68
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.66
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.66
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.65
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.64
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.64
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.63
PRK12370	553	invasion protein regulator; Provisional	99.62
KOG1126	638	consensus DNA-binding cell division cycle control	99.61
PRK12370	553	invasion protein regulator; Provisional	99.6
PRK15359	144	type III secretion system chaperone protein SscB;	99.6
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.6
cd03063	92	TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd)	99.57
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.56
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.56
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.56
PF01257	145	2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredo	99.55
PRK07539	154	NADH dehydrogenase subunit E; Validated	99.54
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.54
TIGR01958	148	nuoE_fam NADH-quinone oxidoreductase, E subunit. T	99.54
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.54
PLN02789	320	farnesyltranstransferase	99.53
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.51
PRK11189	296	lipoprotein NlpI; Provisional	99.51
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.5
cd03064	80	TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) fami	99.49
cd02980	77	TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferr	99.49
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.49
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.49
COG1905	160	NuoE NADH:ubiquinone oxidoreductase 24 kD subunit	99.49
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.49
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.48
PRK05988	156	formate dehydrogenase subunit gamma; Validated	99.48
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.47
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.47
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.47
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.46
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.46
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.46
PRK07571	169	bidirectional hydrogenase complex protein HoxE; Re	99.46
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.46
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.45
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.45
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.45
KOG0553	304	consensus TPR repeat-containing protein [General f	99.45
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.45
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.44
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.44
cd03081	80	TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin	99.43
KOG4234	271	consensus TPR repeat-containing protein [General f	99.42
KOG1125	579	consensus TPR repeat-containing protein [General f	99.42
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.42
PLN02789	320	farnesyltranstransferase	99.42
cd03083	80	TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd)	99.41
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.41
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.4
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.4
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.4
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.4
cd03082	72	TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxi	99.4
cd03062	97	TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) f	99.4
KOG1125	579	consensus TPR repeat-containing protein [General f	99.39
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.39
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.38
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.38
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.38
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.38
PRK10803	263	tol-pal system protein YbgF; Provisional	99.38
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.37
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.36
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.36
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.36
PRK15331	165	chaperone protein SicA; Provisional	99.35
PRK12373	400	NADH dehydrogenase subunit E; Provisional	99.33
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.33
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.33
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.32
KOG1129	478	consensus TPR repeat-containing protein [General f	99.32
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.31
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.3
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.3
PF13512	142	TPR_18: Tetratricopeptide repeat	99.28
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.28
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.27
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.27
KOG2076	895	consensus RNA polymerase III transcription factor	99.27
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.26
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.25
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.25
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.23
PF12688	120	TPR_5: Tetratrico peptide repeat	99.23
PF13371	73	TPR_9: Tetratricopeptide repeat	99.2
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.19
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.18
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.18
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.17
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.16
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.16
PRK14574	822	hmsH outer membrane protein; Provisional	99.16
KOG2003	840	consensus TPR repeat-containing protein [General f	99.14
PRK14574	822	hmsH outer membrane protein; Provisional	99.14
PRK11906	458	transcriptional regulator; Provisional	99.14
KOG1129	478	consensus TPR repeat-containing protein [General f	99.13
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.13
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.12
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.12
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.12
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.11
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.11
KOG4555	175	consensus TPR repeat-containing protein [Function	99.1
KOG2003	840	consensus TPR repeat-containing protein [General f	99.09
COG3411	64	Ferredoxin [Energy production and conversion]	99.09
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.09
PF13371	73	TPR_9: Tetratricopeptide repeat	99.09
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.08
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.07
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.07
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.06
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.06
KOG3196	233	consensus NADH:ubiquinone oxidoreductase, NDUFV2/2	99.05
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.05
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.05
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.04
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.03
KOG2076	895	consensus RNA polymerase III transcription factor	99.03
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.01
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.01
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.0
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.0
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.98
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.98
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.95
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.95
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.94
PRK10803	263	tol-pal system protein YbgF; Provisional	98.94
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.94
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.93
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.93
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.91
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.89
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.89
PRK15331	165	chaperone protein SicA; Provisional	98.87
KOG4234	271	consensus TPR repeat-containing protein [General f	98.87
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.86
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.86
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.86
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.82
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.81
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.81
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.81
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.78
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.78
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.77
PF13512	142	TPR_18: Tetratricopeptide repeat	98.76
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.75
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.74
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.72
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.72
PF12688	120	TPR_5: Tetratrico peptide repeat	98.72
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.71
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.69
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.69
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.67
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.66
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.63
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.6
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.59
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.58
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.58
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.57
PF13428	44	TPR_14: Tetratricopeptide repeat	98.56
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.56
PRK11906	458	transcriptional regulator; Provisional	98.55
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.55
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.55
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.54
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.51
PF13431	34	TPR_17: Tetratricopeptide repeat	98.5
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.49
PF13428	44	TPR_14: Tetratricopeptide repeat	98.48
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.47
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.46
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.45
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.42
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.37
KOG4555	175	consensus TPR repeat-containing protein [Function	98.33
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.32
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.32
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.29
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.27
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.26
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.24
PF13431	34	TPR_17: Tetratricopeptide repeat	98.24
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.23
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.21
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.2
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.19
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.15
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.15
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.13
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.13
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.11
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.11
PLN03218	1060	maturation of RBCL 1; Provisional	98.1
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.09
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.07
PLN03218	1060	maturation of RBCL 1; Provisional	98.06
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.05
PLN03077	857	Protein ECB2; Provisional	98.04
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.04
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.03
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.0
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.99
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.94
PLN03077	857	Protein ECB2; Provisional	97.91
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.88
PRK10941	269	hypothetical protein; Provisional	97.87
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.87
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.86
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.86
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.86
PRK04841	903	transcriptional regulator MalT; Provisional	97.85
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.82
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.8
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.78
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.77
PF06999	230	Suc_Fer-like: Sucrase/ferredoxin-like; InterPro: I	97.74
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.74
KOG2471	696	consensus TPR repeat-containing protein [General f	97.73
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.73
PRK04841	903	transcriptional regulator MalT; Provisional	97.71
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.7
PRK10941	269	hypothetical protein; Provisional	97.7
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.69
KOG1586	288	consensus Protein required for fusion of vesicles	97.68
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.66
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.65
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.64
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.64
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.59
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.58
KOG1310	758	consensus WD40 repeat protein [General function pr	97.58
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.57
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.56
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.54
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.53
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.51
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.5
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.46
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.45
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.43
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.37
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.35
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.35
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.34
KOG3364	149	consensus Membrane protein involved in organellar	97.3
KOG3364	149	consensus Membrane protein involved in organellar	97.29
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.28
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.27
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.26
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.24
KOG4814	872	consensus Uncharacterized conserved protein [Funct	97.23
KOG1585	308	consensus Protein required for fusion of vesicles	97.22
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	97.16
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.15
KOG2471	696	consensus TPR repeat-containing protein [General f	97.14
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.1
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.07
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.07
PF07293	78	DUF1450: Protein of unknown function (DUF1450); In	97.01
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	96.97
KOG1586	288	consensus Protein required for fusion of vesicles	96.97
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.96
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.94
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.91
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.9
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.87
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.85
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.85
PF07845	116	DUF1636: Protein of unknown function (DUF1636); In	96.82
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.71
KOG1585	308	consensus Protein required for fusion of vesicles	96.7
COG2912	269	Uncharacterized conserved protein [Function unknow	96.68
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.67
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.61
KOG2047	835	consensus mRNA splicing factor [RNA processing and	96.57
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.47
KOG2047	835	consensus mRNA splicing factor [RNA processing and	96.47
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.46
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.45
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.45
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.42
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.37
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	96.36
COG2912	269	Uncharacterized conserved protein [Function unknow	96.36
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	96.35
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.28
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.25
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.24
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.2
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.19
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.16
COG5469	143	Predicted metal-binding protein [Function unknown]	96.16
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.13
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	95.95
KOG1550	552	consensus Extracellular protein SEL-1 and related	95.91
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.82
KOG2300	629	consensus Uncharacterized conserved protein [Funct	95.8
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	95.76
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.71
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.67
PRK13669	78	hypothetical protein; Provisional	95.62
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.6
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.49
KOG4814	872	consensus Uncharacterized conserved protein [Funct	95.44
KOG0529	421	consensus Protein geranylgeranyltransferase type I	95.37
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.35
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.33
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	95.31
COG4759	316	Uncharacterized protein conserved in bacteria cont	95.28
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.25
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.17
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.16
KOG1310	758	consensus WD40 repeat protein [General function pr	95.15
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	95.11
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.1
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	95.02
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	94.82
COG4941	415	Predicted RNA polymerase sigma factor containing a	94.8
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.8
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.8
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	94.73
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.7
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.56
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.42
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.35
COG5191	435	Uncharacterized conserved protein, contains HAT (H	94.3
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	94.25
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.11
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.9
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	93.88
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.87
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.82
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	93.57
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	93.56
KOG1550	552	consensus Extracellular protein SEL-1 and related	93.55
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	93.46
COG3947	361	Response regulator containing CheY-like receiver a	93.34
KOG2300	629	consensus Uncharacterized conserved protein [Funct	93.13
KOG0529	421	consensus Protein geranylgeranyltransferase type I	92.9
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.78
KOG2581	493	consensus 26S proteasome regulatory complex, subun	92.19
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	92.12
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	91.93
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	91.92
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	91.61
COG4455	273	ImpE Protein of avirulence locus involved in tempe	91.58
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	91.28
KOG2041	1189	consensus WD40 repeat protein [General function pr	91.27
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	91.1
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	90.9
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	90.87
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	90.66
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	90.56
PRK11619	644	lytic murein transglycosylase; Provisional	90.15
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	89.56
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	89.41
KOG2581	493	consensus 26S proteasome regulatory complex, subun	89.4
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	89.25
COG4455	273	ImpE Protein of avirulence locus involved in tempe	89.21
COG3947	361	Response regulator containing CheY-like receiver a	89.1
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	89.05
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	88.98
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	88.98
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	88.96
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	88.66
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	88.58
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	88.43
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	88.27
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	88.23
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	87.42
KOG3616	1636	consensus Selective LIM binding factor [Transcript	86.85
KOG1258	577	consensus mRNA processing protein [RNA processing	86.83
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	86.83
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	86.54
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	86.22
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	85.92
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	85.9
PF12854	34	PPR_1: PPR repeat	85.73
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	85.31
KOG2041	1189	consensus WD40 repeat protein [General function pr	85.02
KOG1258	577	consensus mRNA processing protein [RNA processing	84.97
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	84.67
PF12854	34	PPR_1: PPR repeat	84.08
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	83.94
KOG3783	546	consensus Uncharacterized conserved protein [Funct	83.88
PF04212	69	MIT: MIT (microtubule interacting and transport) d	83.64
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	83.53
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	83.31
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	83.3
KOG3783	546	consensus Uncharacterized conserved protein [Funct	83.2
KOG4014	248	consensus Uncharacterized conserved protein (conta	83.09
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	81.82
PRK15490	578	Vi polysaccharide biosynthesis protein TviE; Provi	81.55
PRK15490	578	Vi polysaccharide biosynthesis protein TviE; Provi	81.44
KOG3616	1636	consensus Selective LIM binding factor [Transcript	81.3
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	81.29
PHA02537	230	M terminase endonuclease subunit; Provisional	80.48

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.80  E-value=2.4e-18  Score=124.14  Aligned_cols=123  Identities=14%  Similarity=0.144  Sum_probs=113.6

Q ss_pred             HHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHH
Q 026145          107 SEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED  186 (243)
Q Consensus       107 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~  186 (243)
                      ...+++++..+|       ..   ++.+|..+...|++++|+..|++++..+|.+.  .+|.++|.++..+|++++|+..
T Consensus        13 ~~~~~~al~~~p-------~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~lg~~~~~~g~~~~A~~~   80 (144)
T PRK15359         13 EDILKQLLSVDP-------ET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSW--RAHIALAGTWMMLKEYTTAINF   80 (144)
T ss_pred             HHHHHHHHHcCH-------HH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHHhhHHHHHHH
Confidence            456788887776       32   66789999999999999999999999999987  9999999999999999999999


Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          187 VREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       187 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      |+++++++|+++.+++++|.++..+|++++|+..|.+++.++|+++..+..++.+
T Consensus        81 y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~  135 (144)
T PRK15359         81 YGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA  135 (144)
T ss_pred             HHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998776643

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.80  E-value=1.3e-18  Score=134.34  Aligned_cols=115  Identities=29%  Similarity=0.468  Sum_probs=108.9

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 026145          124 KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYIC  203 (243)
Q Consensus       124 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  203 (243)
                      ....+..+...|+.+++.++|.+|+..|.+||+++|.++  ..|.+++.+|.++|.|+.|+++++.+|.++|.+.++|.+
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA--VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~R  154 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA--VYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGR  154 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc--hHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHH
Confidence            346777899999999999999999999999999999998  999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          204 QGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       204 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      ||.+|..+|++++|++.|+++|.++|++...+..+..
T Consensus       155 LG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~  191 (304)
T KOG0553|consen  155 LGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKI  191 (304)
T ss_pred             HHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence            9999999999999999999999999999988877653

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.74  E-value=5.3e-17  Score=136.01  Aligned_cols=137  Identities=18%  Similarity=0.123  Sum_probs=103.7

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      +..|...|..+-|+..|++++...|       .-..++.++|+.+-..|+..+|+.+|.+++.+.|+++  ++.+|+|.+
T Consensus       293 a~iYyeqG~ldlAI~~Ykral~~~P-------~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ha--dam~NLgni  363 (966)
T KOG4626|consen  293 ACIYYEQGLLDLAIDTYKRALELQP-------NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHA--DAMNNLGNI  363 (966)
T ss_pred             EEEEeccccHHHHHHHHHHHHhcCC-------CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccH--HHHHHHHHH
Confidence            5788888999999999999999988       6677777777777777777777777777777777766  777777777


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  239 (243)
                      +..+|.+++|...|.++++..|..+.++.+||.+|..+|++++|+..|++++++.|...+++.++.
T Consensus       364 ~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmG  429 (966)
T KOG4626|consen  364 YREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMG  429 (966)
T ss_pred             HHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcc
Confidence            777777777777777777777777777777777777777777777777777777776666665544

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.74  E-value=1.1e-17  Score=140.01  Aligned_cols=138  Identities=19%  Similarity=0.195  Sum_probs=109.9

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      .|..|...|..+.|..+|..++...|       .-+.+..++|.+|.++|++++|+..|++++++.|..  ++++.|+|.
T Consensus       360 Lgni~~E~~~~e~A~~ly~~al~v~p-------~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f--Ada~~NmGn  430 (966)
T KOG4626|consen  360 LGNIYREQGKIEEATRLYLKALEVFP-------EFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF--ADALSNMGN  430 (966)
T ss_pred             HHHHHHHhccchHHHHHHHHHHhhCh-------hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH--HHHHHhcch
Confidence            35666677777888888888777777       667777788888888888888888888888888874  488888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145          173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  239 (243)
                      +|..+|+.+.|++.|.+|+.++|..++++.+||.+|...|+..+|+..|+.++++.||.++++-++.
T Consensus       431 t~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNll  497 (966)
T KOG4626|consen  431 TYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLL  497 (966)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHH
Confidence            8888888888888888888888888888888888888888888888888888888888888776654

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.73  E-value=1.5e-16  Score=120.66  Aligned_cols=127  Identities=16%  Similarity=0.114  Sum_probs=117.5

Q ss_pred             cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHH-HHcC
Q 026145          100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLAR-LTMG  178 (243)
Q Consensus       100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~-~~~~  178 (243)
                      .++.++++..+++.+..+|       .++..|+.+|.++...|++++|+..|++++.++|+++  .++.++|.++ ...|
T Consensus        52 ~~~~~~~i~~l~~~L~~~P-------~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~--~~~~~lA~aL~~~~g  122 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANP-------QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA--ELYAALATVLYYQAG  122 (198)
T ss_pred             chhHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcC
Confidence            4578899999999999998       8899999999999999999999999999999999988  9999999975 6778


Q ss_pred             C--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhh
Q 026145          179 N--FSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK  235 (243)
Q Consensus       179 ~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  235 (243)
                      +  +++|...++++++.+|+++.+++.+|..+...|++++|+..++++++++|.+..-.
T Consensus       123 ~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~  181 (198)
T PRK10370        123 QHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRT  181 (198)
T ss_pred             CCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence            7  59999999999999999999999999999999999999999999999988655433

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.73  E-value=1.9e-16  Score=113.13  Aligned_cols=124  Identities=15%  Similarity=0.218  Sum_probs=114.9

Q ss_pred             HHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHH
Q 026145          108 EILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV  187 (243)
Q Consensus       108 ~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~  187 (243)
                      +.+++++..+|       .+....+.+|..+...|++++|+..+++++..+|.++  .++.++|.++..+|++++|+..+
T Consensus         4 ~~~~~~l~~~p-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~   74 (135)
T TIGR02552         4 ATLKDLLGLDS-------EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS--RYWLGLAACCQMLKEYEEAIDAY   74 (135)
T ss_pred             hhHHHHHcCCh-------hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677888887       7778899999999999999999999999999999987  99999999999999999999999


Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       188 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      +++++.+|.++..++.+|.++...|++++|+..++++++++|++........+
T Consensus        75 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  127 (135)
T TIGR02552        75 ALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKER  127 (135)
T ss_pred             HHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            99999999999999999999999999999999999999999999887655544

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.71  E-value=1.7e-16  Score=118.41  Aligned_cols=138  Identities=20%  Similarity=0.130  Sum_probs=128.0

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |.-|...|++..|.+.+++++..+|       ....+|..+|.+|.+.|+.+.|-+.|++|+.++|++.  ++++|.|..
T Consensus        42 al~YL~~gd~~~A~~nlekAL~~DP-------s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G--dVLNNYG~F  112 (250)
T COG3063          42 ALGYLQQGDYAQAKKNLEKALEHDP-------SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG--DVLNNYGAF  112 (250)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCc-------ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc--chhhhhhHH
Confidence            5567888899999999999999999       8999999999999999999999999999999999998  999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          174 RLTMGNFSAALEDVREALELAP---NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ++.+|+|++|...|++|+. +|   ..+..+.|+|.|-.+.|+.+.|.+.|+++++++|+++.....+++.
T Consensus       113 LC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~  182 (250)
T COG3063         113 LCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARL  182 (250)
T ss_pred             HHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHH
Confidence            9999999999999999996 55   4467999999999999999999999999999999998887666553

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.71  E-value=9.1e-16  Score=123.84  Aligned_cols=128  Identities=23%  Similarity=0.173  Sum_probs=115.8

Q ss_pred             CCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCH
Q 026145          101 GTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNF  180 (243)
Q Consensus       101 ~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~  180 (243)
                      +..+.++..+.+++...+   ......+..++.+|.++...|++++|+..|+++++.+|+++  .+|+++|.++..+|++
T Consensus        40 ~~~e~~i~~~~~~l~~~~---~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~--~a~~~lg~~~~~~g~~  114 (296)
T PRK11189         40 LQQEVILARLNQILASRD---LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA--DAYNYLGIYLTQAGNF  114 (296)
T ss_pred             hHHHHHHHHHHHHHcccc---CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHCCCH
Confidence            367788888888885332   22235678899999999999999999999999999999987  9999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 026145          181 SAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRR  233 (243)
Q Consensus       181 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  233 (243)
                      ++|+..|+++++++|++..++.++|.++...|++++|++.++++++++|+++.
T Consensus       115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            99999999999999999999999999999999999999999999999999873

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.70  E-value=2.6e-16  Score=139.26  Aligned_cols=139  Identities=17%  Similarity=0.187  Sum_probs=122.7

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |..+...|++++|+..+++++...|       .....+..+|.++...|++++|+..|+++++.+|+++  .+++.+|.+
T Consensus       338 g~~~~~~g~~~eA~~~~~kal~l~P-------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~--~~~~~lg~~  408 (615)
T TIGR00990       338 GTFKCLKGKHLEALADLSKSIELDP-------RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP--DIYYHRAQL  408 (615)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHH
Confidence            4555667899999999999998887       7778888999999999999999999999999999877  899999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ++.+|++++|+..|++++.++|++..++.++|.++..+|++++|+..|++++..+|+++.++..++.+
T Consensus       409 ~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~  476 (615)
T TIGR00990       409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGEL  476 (615)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988888776654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=5.8e-17  Score=136.47  Aligned_cols=142  Identities=15%  Similarity=0.120  Sum_probs=116.3

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      .|..|...++.+.|++.|++++..+|       ..+.++-.+|..+....+++.|...|++||..+|++-  .+|+.+|+
T Consensus       427 ~GNcfSLQkdh~~Aik~f~RAiQldp-------~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY--nAwYGlG~  497 (638)
T KOG1126|consen  427 LGNCFSLQKDHDTAIKCFKRAIQLDP-------RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY--NAWYGLGT  497 (638)
T ss_pred             hcchhhhhhHHHHHHHHHHHhhccCC-------ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh--HHHHhhhh
Confidence            35666667788899999998888887       7777788888888888888888888888888888876  88888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhccC
Q 026145          173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSSTY  243 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i~~  243 (243)
                      +|+++++++.|+-.|++|++++|.+......+|..+.++|+.++|++.|++|+.++|.++-.....+++.|
T Consensus       498 vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~  568 (638)
T KOG1126|consen  498 VYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF  568 (638)
T ss_pred             heeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888877777766643

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.66  E-value=4.1e-15  Score=106.06  Aligned_cols=104  Identities=13%  Similarity=0.072  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG  205 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  205 (243)
                      ......+.+|..++..|++++|...|+-+..++|.+.  ..|+++|.++..+|+|++|+..|.+++.++|+++.+++++|
T Consensus        33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~--~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag  110 (157)
T PRK15363         33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF--DYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAA  110 (157)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence            6777899999999999999999999999999999987  99999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145          206 DVFLAMDQYDAAEKSYSTCLQIDPSI  231 (243)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~p~~  231 (243)
                      .|+...|+.+.|.+.|+.++....++
T Consensus       111 ~c~L~lG~~~~A~~aF~~Ai~~~~~~  136 (157)
T PRK15363        111 ECYLACDNVCYAIKALKAVVRICGEV  136 (157)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999886433

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=1.2e-15  Score=123.95  Aligned_cols=139  Identities=15%  Similarity=0.083  Sum_probs=129.4

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |..|.-.++.++|+.+|+++++.+|       ....+|..+|..|+...+...|++.|++|++++|.|-  .+|+.+|++
T Consensus       337 aNYYSlr~eHEKAv~YFkRALkLNp-------~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy--RAWYGLGQa  407 (559)
T KOG1155|consen  337 ANYYSLRSEHEKAVMYFKRALKLNP-------KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY--RAWYGLGQA  407 (559)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHhcCc-------chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH--HHHhhhhHH
Confidence            4566666699999999999999999       8999999999999999999999999999999999987  999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      |-.++-..=|+-+|++|+...|+++..|..+|.||.++++.++|+..|.+++.....+..++..++++
T Consensus       408 Yeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakL  475 (559)
T KOG1155|consen  408 YEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKL  475 (559)
T ss_pred             HHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999987777777666654

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.65  E-value=2.9e-15  Score=123.64  Aligned_cols=110  Identities=28%  Similarity=0.524  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 026145          130 ALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFL  209 (243)
Q Consensus       130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  209 (243)
                      .+...|..++..|+|++|+..|.+++.++|++.  .+|.++|.++..+|++++|+..+++++.++|+++.+++++|.++.
T Consensus         4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~--~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~   81 (356)
T PLN03088          4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA--ELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM   81 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            366789999999999999999999999999987  999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          210 AMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       210 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      .+|++++|+..|++++.++|+++.+...++++
T Consensus        82 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  113 (356)
T PLN03088         82 KLEEYQTAKAALEKGASLAPGDSRFTKLIKEC  113 (356)
T ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999999999988777654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.64  E-value=6.2e-15  Score=130.58  Aligned_cols=135  Identities=24%  Similarity=0.264  Sum_probs=122.7

Q ss_pred             CCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCH
Q 026145          101 GTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNF  180 (243)
Q Consensus       101 ~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~  180 (243)
                      +.+++|.+.|+.++....    .....+.++..+|..+...|++++|+..|++++.++|++.  .+|..+|.++..+|++
T Consensus       308 ~~y~~A~~~~~~al~~~~----~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~--~~~~~la~~~~~~g~~  381 (615)
T TIGR00990       308 ESYEEAARAFEKALDLGK----LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT--QSYIKRASMNLELGDP  381 (615)
T ss_pred             hhHHHHHHHHHHHHhcCC----CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHCCCH
Confidence            478899999999986531    1127778899999999999999999999999999999976  9999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          181 SAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       181 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ++|+..++++++.+|+++.+++.+|.++...|++++|+..|++++.++|++..++..++.+
T Consensus       382 ~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~  442 (615)
T TIGR00990       382 DKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVT  442 (615)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998887766544

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=5.5e-15  Score=122.04  Aligned_cols=146  Identities=25%  Similarity=0.385  Sum_probs=124.1

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcch-------------------hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAA-------------------KNLEALALRKRAEAEFEKANFSEADGFLSQA  154 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~-------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  154 (243)
                      |..|...++++.++..|.+++.....+...                   .+..+......|+.+++.|+|..|+..|.++
T Consensus       305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA  384 (539)
T KOG0548|consen  305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA  384 (539)
T ss_pred             hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            456666678888888887766444211100                   1133455667799999999999999999999


Q ss_pred             hccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhh
Q 026145          155 IELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRS  234 (243)
Q Consensus       155 l~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  234 (243)
                      |..+|+++  .+|.|+|.||.+++.+..|+.+.+++++++|++..+|+..|.++..+.+|++|.+.|+++++.+|++.++
T Consensus       385 Ikr~P~Da--~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~  462 (539)
T KOG0548|consen  385 IKRDPEDA--RLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA  462 (539)
T ss_pred             HhcCCchh--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence            99999988  9999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhhhhhc
Q 026145          235 KSFKVSS  241 (243)
Q Consensus       235 ~~~~a~i  241 (243)
                      ...+.++
T Consensus       463 ~~~~~rc  469 (539)
T KOG0548|consen  463 IDGYRRC  469 (539)
T ss_pred             HHHHHHH
Confidence            8776654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.63  E-value=1.2e-14  Score=132.78  Aligned_cols=129  Identities=19%  Similarity=0.071  Sum_probs=117.4

Q ss_pred             CCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCH
Q 026145          101 GTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNF  180 (243)
Q Consensus       101 ~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~  180 (243)
                      |++++|...+++++...|       . +..+..+|.++.+.|++++|+..|.+++.++|+++  .++.++|.++...|++
T Consensus       590 Gr~~eAl~~~~~AL~l~P-------~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~--~a~~nLG~aL~~~G~~  659 (987)
T PRK09782        590 GQPELALNDLTRSLNIAP-------S-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS--NYQAALGYALWDSGDI  659 (987)
T ss_pred             CCHHHHHHHHHHHHHhCC-------C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCH
Confidence            789999999999888886       4 67889999999999999999999999999999987  9999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145          181 SAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       181 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  239 (243)
                      ++|+..++++++++|+++.+++++|.++..+|++++|+..|+++++++|++........
T Consensus       660 eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g  718 (987)
T PRK09782        660 AQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTP  718 (987)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhh
Confidence            99999999999999999999999999999999999999999999999998877664433

>PRK12370 invasion protein regulator; Provisional

Probab=99.62  E-value=8.7e-15  Score=127.83  Aligned_cols=127  Identities=15%  Similarity=0.098  Sum_probs=114.4

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEK---------ANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      +.++|.+.+++++..+|       ..+.++..+|.++...         +++++|+..++++++++|+++  .++..+|.
T Consensus       276 ~~~~A~~~~~~Al~ldP-------~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~--~a~~~lg~  346 (553)
T PRK12370        276 SLQQALKLLTQCVNMSP-------NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP--QALGLLGL  346 (553)
T ss_pred             HHHHHHHHHHHHHhcCC-------ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH--HHHHHHHH
Confidence            45688999999999998       7788888888876643         448999999999999999987  99999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhh
Q 026145          173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSF  237 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  237 (243)
                      ++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|+++.....
T Consensus       347 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~  411 (553)
T PRK12370        347 INTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT  411 (553)
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999998765433

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.61  E-value=5e-15  Score=124.94  Aligned_cols=139  Identities=12%  Similarity=0.095  Sum_probs=130.3

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |.-+.....+|+|...|+.++..+|       +...+|+.+|.+|.++++++.|.-.|++|++++|.+.  .....+|..
T Consensus       462 GhE~~~~ee~d~a~~~fr~Al~~~~-------rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns--vi~~~~g~~  532 (638)
T KOG1126|consen  462 GHESIATEEFDKAMKSFRKALGVDP-------RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS--VILCHIGRI  532 (638)
T ss_pred             CChhhhhHHHHhHHHHHHhhhcCCc-------hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccch--hHHhhhhHH
Confidence            3333444589999999999999999       9999999999999999999999999999999999987  888999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      +.++|+.++|+..+++|+.++|.++-..+.+|.+++.++++++|...+++..++-|++..++.++.+|
T Consensus       533 ~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki  600 (638)
T KOG1126|consen  533 QHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKI  600 (638)
T ss_pred             HHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998888776

>PRK12370 invasion protein regulator; Provisional

Probab=99.60  E-value=2e-14  Score=125.51  Aligned_cols=133  Identities=16%  Similarity=0.048  Sum_probs=120.7

Q ss_pred             cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCC
Q 026145          100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN  179 (243)
Q Consensus       100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~  179 (243)
                      .+++++|...+++++..+|       .++.++..+|.++...|++++|+..|+++++++|+++  .+++.+|.++..+|+
T Consensus       317 ~~~~~~A~~~~~~Al~ldP-------~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~--~a~~~lg~~l~~~G~  387 (553)
T PRK12370        317 QNAMIKAKEHAIKATELDH-------NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISA--DIKYYYGWNLFMAGQ  387 (553)
T ss_pred             chHHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCC
Confidence            3468999999999999998       8889999999999999999999999999999999987  999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCchhhhhhhhhc
Q 026145          180 FSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID-PSIRRSKSFKVSS  241 (243)
Q Consensus       180 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~a~i  241 (243)
                      +++|+..++++++++|.++.+++.++.+++..|++++|+..+++++..+ |+++.++.+++.+
T Consensus       388 ~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~  450 (553)
T PRK12370        388 LEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMF  450 (553)
T ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHH
Confidence            9999999999999999998887778878888999999999999999875 7788777665543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.60  E-value=3.1e-14  Score=102.69  Aligned_cols=109  Identities=15%  Similarity=0.016  Sum_probs=102.0

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |..+...|++++|...|+.++...|       ....+++.+|.++...|++++|+..|.+++.++|+++  .+++++|.+
T Consensus        31 g~~~~~~g~~~~A~~~~~~al~~~P-------~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~--~a~~~lg~~  101 (144)
T PRK15359         31 GYASWQEGDYSRAVIDFSWLVMAQP-------WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP--EPVYQTGVC  101 (144)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc--HHHHHHHHH
Confidence            4455678899999999999999998       8899999999999999999999999999999999988  999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAM  211 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  211 (243)
                      +..+|++++|+..|++++++.|+++..+.+++.+...+
T Consensus       102 l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359        102 LKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999887654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.60  E-value=4.8e-14  Score=109.02  Aligned_cols=139  Identities=21%  Similarity=0.161  Sum_probs=116.8

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      +..+...|++++|.+.+++++...|       .....+..+|.++...|++++|+..|+++++..|.+.  .++.++|.+
T Consensus        38 a~~~~~~~~~~~A~~~~~~~l~~~p-------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~  108 (234)
T TIGR02521        38 ALGYLEQGDLEVAKENLDKALEHDP-------DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG--DVLNNYGTF  108 (234)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCc-------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHH
Confidence            4455667899999999999998877       6678889999999999999999999999999999876  888888888


Q ss_pred             HHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          174 RLTMGNFSAALEDVREALELA--PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      +...|++++|+..+++++...  |.....+..+|.++...|++++|...+.+++..+|+++.++..++.+
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~  178 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAEL  178 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHH
Confidence            888899999988888888743  44567788888888888888888888888888888887777666554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH

Probab=99.57  E-value=2.3e-14  Score=93.35  Aligned_cols=73  Identities=19%  Similarity=0.211  Sum_probs=66.9

Q ss_pred             EEEEccCCccCccCHHHHHHHHHh----cCCCcEEEEeeCCCCCCCCCCeEEEe-cCC-eEEEecCCHhHHHHHHHHHhc
Q 026145           42 ELRVCTNRTCRRQGSMQILETLSS----LAPPEVAVKSCGCLGRCGAGPNLVAL-PDG-VVVGHCGTPARASEILMVLCG  115 (243)
Q Consensus        42 ~i~vC~~~~c~~~G~~~~~~~l~~----~g~~~v~v~~~gc~g~c~~~p~~~~~-~~g-~~~~~~~~~~~a~~~l~~~l~  115 (243)
                      +|+||.+++|.+.|+++++++|++    .|+ ++.+..+||+|.|..+|.+.+. |++ ..|.++ +++++.++++.++.
T Consensus         2 ~I~Vc~gT~ciAaGA~~V~~al~~ei~~~gl-~v~v~~tGC~G~C~~ePlV~V~~p~g~v~Y~~V-~~edv~~Iv~~~~~   79 (92)
T cd03063           2 RIYVPRDAAALALGADEVAEAIEAEAAARGL-AATIVRNGSRGMYWLEPLVEVETPGGRVAYGPV-TPADVASLLDAGAL   79 (92)
T ss_pred             EEEEeCChhhhhhCHHHHHHHHHHHHHHcCC-eEEEEEecCceecCCCCEEEEEeCCCcEEEEeC-CHHHHHHHHHHHhh
Confidence            599999999999999999999998    466 7899999999999999999996 888 899999 99999999998875


Q ss_pred             C
Q 026145          116 I  116 (243)
Q Consensus       116 ~  116 (243)
                      .
T Consensus        80 ~   80 (92)
T cd03063          80 E   80 (92)
T ss_pred             c
Confidence            3

FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=3.1e-14  Score=116.54  Aligned_cols=141  Identities=17%  Similarity=0.138  Sum_probs=131.8

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      .|+.+.-.|++-.+.+.|+.++...|       .....|..+|..|....+..+-...|.+|..++|+++  .+|+.+|+
T Consensus       332 ~gtF~fL~g~~~~a~~d~~~~I~l~~-------~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~--dvYyHRgQ  402 (606)
T KOG0547|consen  332 RGTFHFLKGDSLGAQEDFDAAIKLDP-------AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP--DVYYHRGQ  402 (606)
T ss_pred             hhhhhhhcCCchhhhhhHHHHHhcCc-------ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC--chhHhHHH
Confidence            57788888899999999999999987       5555688999999999999999999999999999998  99999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhcc
Q 026145          173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSST  242 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i~  242 (243)
                      +++-+++|++|+..|++++.++|++..++.+++.+++++++++++...|+.+..--|+.++++.+.+.|.
T Consensus       403 m~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiL  472 (606)
T KOG0547|consen  403 MRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEIL  472 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999988763

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.56  E-value=7.7e-14  Score=107.85  Aligned_cols=141  Identities=16%  Similarity=0.156  Sum_probs=122.8

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      .+..+...|++++|.+.+++++...|       .....+..+|..+...|++++|+..|.+++...+.......+.++|.
T Consensus        71 la~~~~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~  143 (234)
T TIGR02521        71 LALYYQQLGELEKAEDSFRRALTLNP-------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGL  143 (234)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence            35566778899999999999998877       56678899999999999999999999999986422112378899999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      ++...|++++|...+++++..+|+++.++..+|.++...|++++|...+++++...|+++..+...+.
T Consensus       144 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  211 (234)
T TIGR02521       144 CALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIR  211 (234)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998887776655443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.56  E-value=1.7e-13  Score=95.40  Aligned_cols=113  Identities=12%  Similarity=0.072  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHH
Q 026145          128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELAPNY---TEAYIC  203 (243)
Q Consensus       128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~  203 (243)
                      +..++.+|..+...|++++|+..|.+++..+|++. ...+++.+|.++...|++++|+..+++++..+|++   +.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            35789999999999999999999999999998763 23688999999999999999999999999998875   678999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          204 QGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       204 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      +|.++..+|++++|+..+.+++...|+++.+.....+
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~  118 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQKR  118 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHhc
Confidence            9999999999999999999999999999888776554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=99.55  E-value=7.8e-15  Score=105.25  Aligned_cols=96  Identities=31%  Similarity=0.558  Sum_probs=75.9

Q ss_pred             CcccccccccccceeecCCCCcccccccccccccCCCcEEEEccCCccCccCHHHHHHHHHh-cCC--------CcEEEE
Q 026145            4 GFGLAFNSVLPVARLRLPSNDKSFCFPLPRARINAELKELRVCTNRTCRRQGSMQILETLSS-LAP--------PEVAVK   74 (243)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vC~~~~c~~~G~~~~~~~l~~-~g~--------~~v~v~   74 (243)
                      .+|++...+++|.++      ++++.     +.+.++++|.||++++|..+|+.++++++++ +|+        +.+.+.
T Consensus        40 ~l~i~~~~v~~v~tF------Y~~f~-----~~p~gk~~I~VC~g~~C~~~Ga~~l~~~l~~~l~i~~g~~~~dg~~~l~  108 (145)
T PF01257_consen   40 ALGIPPAEVYGVATF------YSMFR-----LEPKGKHHIRVCTGTSCHLRGAEELLEALEEELGIKPGETTEDGKFTLE  108 (145)
T ss_dssp             HHTS-HHHHHHHHHH------SSSS------SSS--SEEEEEE-SHHHHTTTHHHHHHHHHHHHCTSCCCCSTTTTEEEE
T ss_pred             HHCCCHHHHHHHHHH------HHHcc-----cCCCCCcEEEeCCCchHHhCCCHHHHHHHHHHhCCcccccCCCceEEEE
Confidence            367777888888555      33333     3444889999999999999999999999998 331        379999


Q ss_pred             eeCCCCCCCCCCeEEEecCCeEEEecCCHhHHHHHHHHH
Q 026145           75 SCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMVL  113 (243)
Q Consensus        75 ~~gc~g~c~~~p~~~~~~~g~~~~~~~~~~~a~~~l~~~  113 (243)
                      .++|+|.|..+|++.+  ++.+|.++ +++++.++++++
T Consensus       109 ~~~ClG~C~~aP~v~V--~~~~y~~v-t~e~v~~il~~l  144 (145)
T PF01257_consen  109 ETGCLGACDQAPVVMV--DGEWYGNV-TPEKVDEILEEL  144 (145)
T ss_dssp             EESSSSSGGGSSEEEE--CCCEEESS-SCCHHHHHHHHH
T ss_pred             ECCCccccCCCCEEEE--CCEEECCC-CHHHHHHHHHhc
Confidence            9999999999999988  88899999 999999998764

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....

>PRK07539 NADH dehydrogenase subunit E; Validated

Probab=99.54  E-value=1.6e-14  Score=104.68  Aligned_cols=95  Identities=26%  Similarity=0.428  Sum_probs=77.7

Q ss_pred             CcccccccccccceeecCCCCcccccccccccccCCCcEEEEccCCccCccCHHHHHHHHHh-cCC--------CcEEEE
Q 026145            4 GFGLAFNSVLPVARLRLPSNDKSFCFPLPRARINAELKELRVCTNRTCRRQGSMQILETLSS-LAP--------PEVAVK   74 (243)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vC~~~~c~~~G~~~~~~~l~~-~g~--------~~v~v~   74 (243)
                      .+|++...|++|.++      +++.+     +.+.++++|.||++++|..+|+.++++++++ +++        +.+.+.
T Consensus        49 ~l~v~~~~v~~v~tF------Y~~f~-----~~p~gk~~I~VC~g~~C~~~Ga~~l~~~l~~~L~i~~g~tt~dg~~~l~  117 (154)
T PRK07539         49 YLGMPAIDVEEVATF------YSMIF-----RQPVGRHVIQVCTSTPCWLRGGEAILAALKKKLGIKPGETTADGRFTLL  117 (154)
T ss_pred             HhCcCHHHHHHHHHH------HhhhC-----cCCCCCEEEEEcCCchHHHCCHHHHHHHHHHHhCCCCCCcCCCCeEEEE
Confidence            367788888888555      33333     3344889999999999999999999999998 342        258999


Q ss_pred             eeCCCCCCCCCCeEEEecCCeEEEecCCHhHHHHHHHH
Q 026145           75 SCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMV  112 (243)
Q Consensus        75 ~~gc~g~c~~~p~~~~~~~g~~~~~~~~~~~a~~~l~~  112 (243)
                      .++|+|.|+.+|++.+  ++.+|.++ +++++.++++.
T Consensus       118 ~~~ClG~C~~gPvv~V--~~~~y~~v-t~e~v~~il~~  152 (154)
T PRK07539        118 EVECLGACDNAPVVMI--NDDTYEDL-TPEKIDELLDE  152 (154)
T ss_pred             EccccCccCCCCEEEE--CCEEeCCC-CHHHHHHHHHh
Confidence            9999999999999988  47899888 99999988865

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.54  E-value=2.2e-13  Score=124.57  Aligned_cols=136  Identities=15%  Similarity=0.056  Sum_probs=116.2

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHH
Q 026145           96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL  175 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~  175 (243)
                      .+...|+++.|...+++++...|       .....+..++......|++++|+..|+++++.+|+ .  .++.++|.++.
T Consensus       551 all~~Gd~~eA~~~l~qAL~l~P-------~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~--~a~~~LA~~l~  620 (987)
T PRK09782        551 TAQAAGNGAARDRWLQQAEQRGL-------GDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-A--NAYVARATIYR  620 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCC-------ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-H--HHHHHHHHHHH
Confidence            34456677777777777776665       33444445555556669999999999999999996 5  89999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       176 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ++|++++|+..+++++.++|+++.++.++|.++...|++++|+..|+++++++|+++.++..++.+
T Consensus       621 ~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~a  686 (987)
T PRK09782        621 QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYV  686 (987)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999998877654

>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit

Probab=99.54  E-value=2.1e-14  Score=103.43  Aligned_cols=95  Identities=27%  Similarity=0.380  Sum_probs=78.1

Q ss_pred             CcccccccccccceeecCCCCcccccccccccccCCCcEEEEccCCccCccCHHHHHHHHHh-cCC--------CcEEEE
Q 026145            4 GFGLAFNSVLPVARLRLPSNDKSFCFPLPRARINAELKELRVCTNRTCRRQGSMQILETLSS-LAP--------PEVAVK   74 (243)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vC~~~~c~~~G~~~~~~~l~~-~g~--------~~v~v~   74 (243)
                      .+||+...|++|.++      +++.+     +.+.++++|+||++++|...|+.++++++++ +|.        +.+.+.
T Consensus        43 ~l~~~~~~v~~v~tF------Y~~f~-----~~p~gk~~I~VC~g~~C~~~Ga~~v~~~l~~~L~i~~g~~t~dg~~~l~  111 (148)
T TIGR01958        43 MLGIPPVWVYEVATF------YSMFD-----TEPVGRYHLQVCTNVPCALRGSEALLKYLENKLGIKPGETTPDGRFTLV  111 (148)
T ss_pred             HhCcCHHHHHHHHhH------HhhcC-----cCCCCCEEEEEcCCchhhhcCHHHHHHHHHHHhCCCCCCCCCCCeEEEE
Confidence            468888888888655      33333     3444889999999999999999999999998 342        258999


Q ss_pred             eeCCCCCCCCCCeEEEecCCeEEEecCCHhHHHHHHHH
Q 026145           75 SCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMV  112 (243)
Q Consensus        75 ~~gc~g~c~~~p~~~~~~~g~~~~~~~~~~~a~~~l~~  112 (243)
                      .++|+|.|+.+|++.+.  +.+|.++ +++++.++++.
T Consensus       112 ~~~ClG~C~~aP~v~V~--~~~y~~v-t~e~v~~il~~  146 (148)
T TIGR01958       112 EVECLGACGNAPVMMIN--DDYYEFL-TPEKLDELLER  146 (148)
T ss_pred             EcCccCccCCCCEEEEC--CEEeCCC-CHHHHHHHHHh
Confidence            99999999999999885  5789888 89999988864

This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.54  E-value=2.4e-13  Score=120.92  Aligned_cols=132  Identities=13%  Similarity=0.046  Sum_probs=113.6

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHH----HHHHHHHhhccCCCCchHHHHHhHH
Q 026145           96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSE----ADGFLSQAIELKPFGGIHVLYKDRC  171 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~~~la  171 (243)
                      .+...|++++|+..+++++...|       ..+..++.+|..+...|++++    |+..|++++..+|++.  .++..+|
T Consensus       221 ~l~~~g~~~eA~~~~~~al~~~p-------~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~--~a~~~lg  291 (656)
T PRK15174        221 TLCAVGKYQEAIQTGESALARGL-------DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV--RIVTLYA  291 (656)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH--HHHHHHH
Confidence            34456788888888888888777       667788889999999999885    7899999999999876  8899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhh
Q 026145          172 LARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKS  236 (243)
Q Consensus       172 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  236 (243)
                      .++...|++++|+..+++++.++|+++.++..+|.++...|++++|+..|++++..+|+++....
T Consensus       292 ~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~  356 (656)
T PRK15174        292 DALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR  356 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence            99999999999999999999999999999999999999999999999999999998888765443

>PLN02789 farnesyltranstransferase

Probab=99.53  E-value=3.7e-13  Score=109.04  Aligned_cols=133  Identities=14%  Similarity=0.063  Sum_probs=122.4

Q ss_pred             cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcC
Q 026145          100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKA-NFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMG  178 (243)
Q Consensus       100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~  178 (243)
                      .+..++|+....+++..+|       ....+|..++.++...+ ++++++..+++++..+|++.  .+|+.++.++..++
T Consensus        50 ~e~serAL~lt~~aI~lnP-------~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny--qaW~~R~~~l~~l~  120 (320)
T PLN02789         50 DERSPRALDLTADVIRLNP-------GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY--QIWHHRRWLAEKLG  120 (320)
T ss_pred             CCCCHHHHHHHHHHHHHCc-------hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch--HHhHHHHHHHHHcC
Confidence            3477888989989998888       88999999999999988 68999999999999999987  99999999999998


Q ss_pred             CH--HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          179 NF--SAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       179 ~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      +.  ++++..++++++.+|.+..+|..++.++..+|++++|++.+.++++++|.+..+|..+..+
T Consensus       121 ~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~v  185 (320)
T PLN02789        121 PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFV  185 (320)
T ss_pred             chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHH
Confidence            74  7889999999999999999999999999999999999999999999999999999877643

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=1.4e-13  Score=110.59  Aligned_cols=139  Identities=20%  Similarity=0.404  Sum_probs=123.4

Q ss_pred             cCCeEEEecCCHhHHHHHHHHHhcCCCCCcchh-----hHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc--hH
Q 026145           92 PDGVVVGHCGTPARASEILMVLCGIKSDHDAAK-----NLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG--IH  164 (243)
Q Consensus        92 ~~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~  164 (243)
                      ..|..+...++.+.++..|++.+..+|+.....     ......+...|+-.++.|+|..|.+.|..+|.++|++.  .+
T Consensus       208 vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na  287 (486)
T KOG0550|consen  208 VRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA  287 (486)
T ss_pred             hcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhH
Confidence            356666777799999999999999987433222     24556788899999999999999999999999999875  46


Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 026145          165 VLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS  230 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  230 (243)
                      ..|.++|.+..++|+..+|+...+.+++++|...+++...|.|+..+++|++|++.|+++++...+
T Consensus       288 klY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  288 KLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            789999999999999999999999999999999999999999999999999999999999998766

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.51  E-value=3.2e-13  Score=109.06  Aligned_cols=126  Identities=17%  Similarity=0.087  Sum_probs=110.5

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      .|..|...|+++.|...|++++...|       ..+.+|+.+|.++...|++++|+..|+++++++|++.  .++.++|.
T Consensus        70 ~g~~~~~~g~~~~A~~~~~~Al~l~P-------~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~--~a~~~lg~  140 (296)
T PRK11189         70 RGVLYDSLGLRALARNDFSQALALRP-------DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--YAYLNRGI  140 (296)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHH
Confidence            46677788999999999999999998       7889999999999999999999999999999999987  99999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145          173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID  228 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  228 (243)
                      ++...|++++|++.++++++++|+++.....+ .+....+++++|+..+.+++...
T Consensus       141 ~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~~l~~~~~~~  195 (296)
T PRK11189        141 ALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKENLKQRYEKL  195 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHHHHHHHHhhC
Confidence            99999999999999999999999987432222 23456788999999998776543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.50  E-value=5.2e-13  Score=125.82  Aligned_cols=140  Identities=21%  Similarity=0.220  Sum_probs=123.6

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHH--------
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHV--------  165 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--------  165 (243)
                      |..+...|++++|+..|++++...|       .++.++..+|.++...|++++|+..|+++++.+|++....        
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~P-------~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~  348 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRANP-------KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV  348 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence            4445667899999999999999988       7788999999999999999999999999999999764111        


Q ss_pred             ----HHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          166 ----LYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       166 ----~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                          ....+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|++.|+++++++|++..++..++.
T Consensus       349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~  427 (1157)
T PRK11447        349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLAN  427 (1157)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence                223558889999999999999999999999999999999999999999999999999999999999887765543

>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes

Probab=99.49  E-value=1.5e-13  Score=88.75  Aligned_cols=70  Identities=29%  Similarity=0.574  Sum_probs=61.7

Q ss_pred             CcEEEEccCCccCccCHHHHHHHHHhc-CC--------CcEEEEeeCCCCCCCCCCeEEEecCCeEEEecCCHhHHHHHH
Q 026145           40 LKELRVCTNRTCRRQGSMQILETLSSL-AP--------PEVAVKSCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEIL  110 (243)
Q Consensus        40 ~~~i~vC~~~~c~~~G~~~~~~~l~~~-g~--------~~v~v~~~gc~g~c~~~p~~~~~~~g~~~~~~~~~~~a~~~l  110 (243)
                      +++|+||.+++|..+|++++++++++. +.        +.|.+..++|+|.|..+|++.+  .+.+|.++ +++++.+++
T Consensus         1 ~~~v~vC~~~~C~~~Ga~~~~~~l~~~l~~~~~~~~~~~~v~v~~t~ClG~C~~gP~v~v--~g~~y~~v-t~~~i~~i~   77 (80)
T cd03064           1 KHVIRVCTGTACHLRGAEALLEALEKKLGIKPGETTPDGRFTLEEVECLGACDLAPVMMI--NDDVYGRL-TPEKVDAIL   77 (80)
T ss_pred             CEEEEECCCcHHHhCCHHHHHHHHHHHhCCCCCCcCCCCEEEEEEecCcCcCCCCCEEEE--CCEEECCC-CHHHHHHHH
Confidence            378999999999999999999999982 21        2699999999999999999988  58999999 999999888


Q ss_pred             HH
Q 026145          111 MV  112 (243)
Q Consensus       111 ~~  112 (243)
                      ++
T Consensus        78 ~~   79 (80)
T cd03064          78 EA   79 (80)
T ss_pred             Hh
Confidence            64

It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu

>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE)

Probab=99.49  E-value=2.4e-13  Score=87.26  Aligned_cols=71  Identities=38%  Similarity=0.719  Sum_probs=64.0

Q ss_pred             cEEEEccCCccCccCHHHHHHHHHhc----CC-CcEEEEeeCCCCCCCCCCeEEEecCCeEEEecCCHhHHHHHHHH
Q 026145           41 KELRVCTNRTCRRQGSMQILETLSSL----AP-PEVAVKSCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMV  112 (243)
Q Consensus        41 ~~i~vC~~~~c~~~G~~~~~~~l~~~----g~-~~v~v~~~gc~g~c~~~p~~~~~~~g~~~~~~~~~~~a~~~l~~  112 (243)
                      ++|+||++++|...|+++++++|++.    ++ ..+.+..++|+|.|..+|++.++|.+.+|... +++++.+++++
T Consensus         1 ~~I~VC~~~~C~~~G~~~l~~~l~~~~~~~~~~~~v~v~~~~Clg~C~~~P~v~i~~~~~~y~~v-~~~~~~~il~~   76 (77)
T cd02980           1 HHILVCTGTACGLRGAEELLEALEKELGIRGGDGRVTVERVGCLGACGLAPVVVVYPDGVWYGRV-TPEDVEEIVEE   76 (77)
T ss_pred             CEEEEccCCCcccCCHHHHHHHHHHHHhhhcCCCeEEEEEcCCcCcccCCCEEEEeCCCeEEccC-CHHHHHHHHHh
Confidence            47999999999999999999999982    32 37999999999999999999999989999999 89999988864

TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.49  E-value=2.2e-13  Score=109.36  Aligned_cols=139  Identities=18%  Similarity=0.156  Sum_probs=116.0

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHH
Q 026145           96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL  175 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~  175 (243)
                      .+...++++++.+.++.+....+     ...++..|..+|.++.+.|++++|++.|+++++.+|++.  .+...++.++.
T Consensus       119 ~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~--~~~~~l~~~li  191 (280)
T PF13429_consen  119 LYYRLGDYDEAEELLEKLEELPA-----APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDP--DARNALAWLLI  191 (280)
T ss_dssp             -HHHTT-HHHHHHHHHHHHH-T--------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H--HHHHHHHHHHC
T ss_pred             HHHHHhHHHHHHHHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHH
Confidence            45566799999999988664331     115678899999999999999999999999999999987  89999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       176 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ..|+++++.+.+....+..|.++..+..+|.++..+|++++|+.++++++..+|+++.....++.+
T Consensus       192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~  257 (280)
T PF13429_consen  192 DMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADA  257 (280)
T ss_dssp             TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHH
T ss_pred             HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccc
Confidence            999999999999888888888889999999999999999999999999999999999998887765

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.49  E-value=1e-12  Score=116.20  Aligned_cols=129  Identities=5%  Similarity=-0.103  Sum_probs=104.7

Q ss_pred             eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHH
Q 026145           95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLAR  174 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~  174 (243)
                      ......|.+++|...++.++...|       +...++..++.++.+.+++++|+..+++++..+|++.  .+++.+|.++
T Consensus        94 ~i~~~~g~~~ea~~~l~~~~~~~P-------d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~--~~~~~~a~~l  164 (694)
T PRK15179         94 RALEAAHRSDEGLAVWRGIHQRFP-------DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA--REILLEAKSW  164 (694)
T ss_pred             HHHHHcCCcHHHHHHHHHHHhhCC-------CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH--HHHHHHHHHH
Confidence            344566788888888888888887       7788888888888888888888888888888888876  8888888888


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 026145          175 LTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIR  232 (243)
Q Consensus       175 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  232 (243)
                      .++|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-.
T Consensus       165 ~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~  222 (694)
T PRK15179        165 DEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA  222 (694)
T ss_pred             HHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence            8888888888888888888888888888888888888888888888888887765544

>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]

Probab=99.49  E-value=1.6e-13  Score=97.74  Aligned_cols=96  Identities=29%  Similarity=0.479  Sum_probs=80.3

Q ss_pred             cccccccccccceeecCCCCcccccccccccccCCCcEEEEccCCccCccCHHHHHHHHHh-cCC--------CcEEEEe
Q 026145            5 FGLAFNSVLPVARLRLPSNDKSFCFPLPRARINAELKELRVCTNRTCRRQGSMQILETLSS-LAP--------PEVAVKS   75 (243)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vC~~~~c~~~G~~~~~~~l~~-~g~--------~~v~v~~   75 (243)
                      .||+..-+++|+++           +.+.++.+.++++|.||+++.|...|+.++++.+++ +|+        +.+++..
T Consensus        53 L~i~~~~v~~VaTF-----------Y~~f~~~P~Gr~~i~VC~~t~C~l~Gs~~l~~~l~~~lgi~~gett~DG~ftl~~  121 (160)
T COG1905          53 LGIPRARVYGVATF-----------YTQFFLKPVGRHHIRVCTGTACHLKGSEALLKALEKKLGIKPGETTADGKFTLEP  121 (160)
T ss_pred             hCCCHHHheeeeee-----------ehhhccCcCCCeEEEEeCCcHHhhcChHHHHHHHHHHhCCCCCCcCCCCeEEEee
Confidence            57777778888665           444555566899999999999999999999999999 442        3689999


Q ss_pred             eCCCCCCCCCCeEEEecCCeEEEecCCHhHHHHHHHHHh
Q 026145           76 CGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMVLC  114 (243)
Q Consensus        76 ~gc~g~c~~~p~~~~~~~g~~~~~~~~~~~a~~~l~~~l  114 (243)
                      ++|+|.|+.+|++++  ++..|... ++++..+++++..
T Consensus       122 v~ClGaC~~AP~vmi--nd~~~~~l-t~e~l~eil~~~~  157 (160)
T COG1905         122 VECLGACGQAPVVMI--NDDVYGRL-TPEKLEEILEKLK  157 (160)
T ss_pred             eeeecccccCCEEEE--CCchhccC-CHHHHHHHHHHHh
Confidence            999999999999977  77888887 9999999998754

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=2.7e-13  Score=112.21  Aligned_cols=110  Identities=28%  Similarity=0.521  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 026145          130 ALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFL  209 (243)
Q Consensus       130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  209 (243)
                      .....|+..+..|+|+.|+.+|..+|.++|.+.  ..|.|+..+|..+|+|++|+.+..+.++++|+++..|..+|.++.
T Consensus         4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nh--vlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~   81 (539)
T KOG0548|consen    4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNH--VLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF   81 (539)
T ss_pred             HHHHHHHhhcccccHHHHHHHHHHHHccCCCcc--chhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence            355778999999999999999999999999977  999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          210 AMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       210 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      .+|+|++|+..|.+.|+.+|++..++.-++.+
T Consensus        82 ~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a  113 (539)
T KOG0548|consen   82 GLGDYEEAILAYSEGLEKDPSNKQLKTGLAQA  113 (539)
T ss_pred             hcccHHHHHHHHHHHhhcCCchHHHHHhHHHh
Confidence            99999999999999999999999988776653

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=3.1e-12  Score=103.17  Aligned_cols=116  Identities=21%  Similarity=0.346  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-------------hHHHHHhHHHHHHHcCCHHHHHHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-------------IHVLYKDRCLARLTMGNFSAALEDVREALE  192 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~  192 (243)
                      ..+......|+.+++.|+|..|...|++++..-+...             ...++.|++.|+.++++|.+|+....++|.
T Consensus       206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe  285 (397)
T KOG0543|consen  206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE  285 (397)
T ss_pred             HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            4456678899999999999999999999987633110             135789999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          193 LAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       193 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ++|+|..++|+.|.++..+|+|+.|+..|+++++++|+|..+..-+.++
T Consensus       286 ~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l  334 (397)
T KOG0543|consen  286 LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL  334 (397)
T ss_pred             cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998887665543

>PRK05988 formate dehydrogenase subunit gamma; Validated

Probab=99.48  E-value=1.5e-13  Score=99.15  Aligned_cols=96  Identities=22%  Similarity=0.364  Sum_probs=78.9

Q ss_pred             CcccccccccccceeecCCCCcccccccccccccCCCcEEEEccCCccCccCHHHHHHHHHh-cCC--------CcEEEE
Q 026145            4 GFGLAFNSVLPVARLRLPSNDKSFCFPLPRARINAELKELRVCTNRTCRRQGSMQILETLSS-LAP--------PEVAVK   74 (243)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vC~~~~c~~~G~~~~~~~l~~-~g~--------~~v~v~   74 (243)
                      .+||+...|++|.++      +++.     ++.+.++++|.||+++.|+..|+.++++++++ +|+        +.+++.
T Consensus        50 ~l~v~~~~V~~vatF------Y~~f-----~~~p~Gk~~I~VC~~~~C~~~G~~~ll~~l~~~Lgi~~gett~Dg~ftL~  118 (156)
T PRK05988         50 ALNLSRAEVHGVITF------YHDF-----RTHPPGRHVLKLCRAEACQAMGGDALAAHAKARLGIDFHQTTADGAVTLE  118 (156)
T ss_pred             HhCCCHHHHHHHHHH------hhcc-----CCCCCCCEEEEEeCCchhhcCCHHHHHHHHHHHhCCCCCCcCCCCeEEEE
Confidence            467888888888655      3333     33445899999999999999999999999999 342        258999


Q ss_pred             eeCCCCCCCCCCeEEEecCCeEEEecCCHhHHHHHHHHH
Q 026145           75 SCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMVL  113 (243)
Q Consensus        75 ~~gc~g~c~~~p~~~~~~~g~~~~~~~~~~~a~~~l~~~  113 (243)
                      .+.|+|.|+.+|++.+  ++..|.++ +++++.+++.++
T Consensus       119 ~~~ClG~C~~aP~~~i--n~~~~~~l-t~~~~~~il~~~  154 (156)
T PRK05988        119 PVYCLGLCACSPAAML--DGEVHGRL-DPQRLDALLAEA  154 (156)
T ss_pred             eeeecCccCCCCeEEE--CCEEeCCC-CHHHHHHHHHHh
Confidence            9999999999999977  78888888 999999888754

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.47  E-value=1.1e-12  Score=98.14  Aligned_cols=103  Identities=25%  Similarity=0.255  Sum_probs=97.0

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 026145          125 NLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQ  204 (243)
Q Consensus       125 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  204 (243)
                      ..-+.+...+|.-|+..|++..|...+++||+.+|++.  .+|..++.+|...|+.+.|-+.|++|++++|++.+++.|.
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~--~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY  109 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY--LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY  109 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh
Confidence            35566788999999999999999999999999999977  9999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhccCCC
Q 026145          205 GDVFLAMDQYDAAEKSYSTCLQIDPS  230 (243)
Q Consensus       205 a~~~~~~g~~~~A~~~~~~al~~~p~  230 (243)
                      |..++.+|++++|...|.+|+. +|.
T Consensus       110 G~FLC~qg~~~eA~q~F~~Al~-~P~  134 (250)
T COG3063         110 GAFLCAQGRPEEAMQQFERALA-DPA  134 (250)
T ss_pred             hHHHHhCCChHHHHHHHHHHHh-CCC
Confidence            9999999999999999999997 443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.47  E-value=1.3e-12  Score=116.30  Aligned_cols=131  Identities=8%  Similarity=-0.085  Sum_probs=121.2

Q ss_pred             EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc
Q 026145           98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM  177 (243)
Q Consensus        98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~  177 (243)
                      ...|++++|...+...+...|       ..+.+++.+|......|++++|+..|++++..+|+++  .++..+|.++...
T Consensus        53 ~~~g~~~~A~~l~~~~l~~~p-------~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~--~a~~~la~~l~~~  123 (656)
T PRK15174         53 LRKDETDVGLTLLSDRVLTAK-------NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQP--EDVLLVASVLLKS  123 (656)
T ss_pred             HhcCCcchhHHHhHHHHHhCC-------CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHc
Confidence            456799999999999998888       8888999999999999999999999999999999987  9999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhh
Q 026145          178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSF  237 (243)
Q Consensus       178 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  237 (243)
                      |++++|+..++++++++|+++.++..++.++...|++++|+..+.+++..+|+++.++..
T Consensus       124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~  183 (656)
T PRK15174        124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIAT  183 (656)
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988877643

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.47  E-value=1.5e-12  Score=115.07  Aligned_cols=114  Identities=9%  Similarity=-0.042  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG  205 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  205 (243)
                      ..+.+++.+|.+....|.+++|+..++.++++.|++.  .++.+++.++.+.+++++|+..+++++..+|+++.+++.+|
T Consensus        84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~--~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a  161 (694)
T PRK15179         84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS--EAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA  161 (694)
T ss_pred             ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH--HHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence            5688999999999999999999999999999999987  99999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          206 DVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      .++.++|++++|++.|++++..+|+++.++..++..
T Consensus       162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~  197 (694)
T PRK15179        162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQS  197 (694)
T ss_pred             HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            999999999999999999999999999998777653

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.46  E-value=1.8e-12  Score=122.17  Aligned_cols=134  Identities=14%  Similarity=0.121  Sum_probs=118.8

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhH-----
Q 026145           96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDR-----  170 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l-----  170 (243)
                      .+...|++++|++.+++++...|       ..+.+++.+|.++...|++++|++.|+++++.+|++.  .++..+     
T Consensus       360 ~~~~~g~~~eA~~~~~~Al~~~P-------~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~--~a~~~L~~l~~  430 (1157)
T PRK11447        360 AALKANNLAQAERLYQQARQVDN-------TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT--NAVRGLANLYR  430 (1157)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHH
Confidence            34467799999999999999988       6778899999999999999999999999999999975  444433     


Q ss_pred             -------------------------------------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 026145          171 -------------------------------------CLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQ  213 (243)
Q Consensus       171 -------------------------------------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  213 (243)
                                                           |..+...|++++|+..|+++++++|+++.+++.+|.+|...|+
T Consensus       431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~  510 (1157)
T PRK11447        431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ  510 (1157)
T ss_pred             hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence                                                 4455578999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCCCchhhhhhh
Q 026145          214 YDAAEKSYSTCLQIDPSIRRSKSFK  238 (243)
Q Consensus       214 ~~~A~~~~~~al~~~p~~~~~~~~~  238 (243)
                      +++|+..+++++..+|+++.++..+
T Consensus       511 ~~~A~~~l~~al~~~P~~~~~~~a~  535 (1157)
T PRK11447        511 RSQADALMRRLAQQKPNDPEQVYAY  535 (1157)
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            9999999999999999998876543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=1.2e-12  Score=106.82  Aligned_cols=124  Identities=15%  Similarity=0.095  Sum_probs=117.8

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |.-|..+.+...|++-++++++.+|       .+-++|+.+|+.|.-.+-+.=|+-+|++|+...|+|+  ..|..+|.|
T Consensus       371 GHEyvEmKNt~AAi~sYRrAvdi~p-------~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDs--Rlw~aLG~C  441 (559)
T KOG1155|consen  371 GHEYVEMKNTHAAIESYRRAVDINP-------RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDS--RLWVALGEC  441 (559)
T ss_pred             hHHHHHhcccHHHHHHHHHHHhcCc-------hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCch--HHHHHHHHH
Confidence            4455566688999999999999999       9999999999999999999999999999999999998  999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ  226 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  226 (243)
                      |.++++.++|+.+|.+++.....+..++..+|.+|.++++.++|..+|.+.++
T Consensus       442 Y~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  442 YEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999999999999999999988899999999999999999999999999998

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.46  E-value=2.1e-12  Score=116.90  Aligned_cols=134  Identities=14%  Similarity=0.115  Sum_probs=123.5

Q ss_pred             EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc
Q 026145           98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM  177 (243)
Q Consensus        98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~  177 (243)
                      ...|+.++|++++.+.....|       ..+.++..+|..+...|++++|+..|+++++.+|.++  .++..++.++...
T Consensus        26 ~~~g~~~~A~~~~~~~~~~~~-------~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~la~~l~~~   96 (765)
T PRK10049         26 LWAGQDAEVITVYNRYRVHMQ-------LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND--DYQRGLILTLADA   96 (765)
T ss_pred             HHcCCHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHC
Confidence            456799999999999886555       6677899999999999999999999999999999987  8999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       178 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      |++++|+..++++++.+|+++. +..+|.++...|++++|+..++++++++|+++.++..++.+
T Consensus        97 g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~  159 (765)
T PRK10049         97 GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQA  159 (765)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999999999 99999999999999999999999999999999988766543

>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed

Probab=99.46  E-value=2.1e-13  Score=99.27  Aligned_cols=96  Identities=30%  Similarity=0.474  Sum_probs=79.4

Q ss_pred             CcccccccccccceeecCCCCcccccccccccccCCCcEEEEccCCccCccCHHHHHHHHHh-cCC--------CcEEEE
Q 026145            4 GFGLAFNSVLPVARLRLPSNDKSFCFPLPRARINAELKELRVCTNRTCRRQGSMQILETLSS-LAP--------PEVAVK   74 (243)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vC~~~~c~~~G~~~~~~~l~~-~g~--------~~v~v~   74 (243)
                      .+||+...|++|.++      ++++     ++.+.++++|.||++++|+..|+.++++++++ +|+        +.+++.
T Consensus        63 ~l~v~~a~V~gVatF------Y~~f-----~~~P~Gk~~I~VC~g~aC~~~G~~~ll~~l~~~Lgi~~gett~DG~ftL~  131 (169)
T PRK07571         63 QLKLPLSRVYGVATF------YHLF-----SLKPSGEHTCVVCTGTACYVKGSAAILEDLENELGIKAGETTADGKLSLL  131 (169)
T ss_pred             HhCcCHHHHHHHHHH------cccc-----CcCCCCCEEEEEcCChHHHHCCcHHHHHHHHHHhCCCCCCcCCCCeEEEE
Confidence            467888888888555      3333     33444889999999999999999999999998 443        268999


Q ss_pred             eeCCCCCCCCCCeEEEecCCeEEEecCCHhHHHHHHHHH
Q 026145           75 SCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMVL  113 (243)
Q Consensus        75 ~~gc~g~c~~~p~~~~~~~g~~~~~~~~~~~a~~~l~~~  113 (243)
                      .+.|+|.|+.+|++.+  ++..|.++ +++++.+++.+.
T Consensus       132 ~~~ClG~C~~AP~~~V--n~~~~~~l-t~e~v~~il~~~  167 (169)
T PRK07571        132 TARCLGACGIAPAVVF--DGKVAGKQ-TPESVLEKVQGW  167 (169)
T ss_pred             EecccCccCCCCeEEE--CCEEeCCC-CHHHHHHHHHHH
Confidence            9999999999999977  78899988 999999988765

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.46  E-value=6e-13  Score=105.02  Aligned_cols=112  Identities=26%  Similarity=0.310  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 026145          128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDV  207 (243)
Q Consensus       128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  207 (243)
                      ...+...|+.|+++|.|++|+.+|.+++..+|.++  ..+.|++.+|+++++|..|..++..|+.++.....+|..++.+
T Consensus        97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~Np--V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~A  174 (536)
T KOG4648|consen   97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNP--VYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQA  174 (536)
T ss_pred             hHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCc--cchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence            33467899999999999999999999999999988  8999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          208 FLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       208 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      -..+|+.++|.+.++.++++.|++.++...++.|
T Consensus       175 R~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i  208 (536)
T KOG4648|consen  175 RESLGNNMEAKKDCETVLALEPKNIELKKSLARI  208 (536)
T ss_pred             HHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence            9999999999999999999999999988877765

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.45  E-value=2.2e-12  Score=85.08  Aligned_cols=99  Identities=29%  Similarity=0.522  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 026145          130 ALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFL  209 (243)
Q Consensus       130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  209 (243)
                      .++.+|..+...|++++|+..++++++..|.+.  .++..+|.++...+++++|+..+++++...|.+..++..+|.++.
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA--DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY   79 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence            578899999999999999999999999999976  889999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHhccCCC
Q 026145          210 AMDQYDAAEKSYSTCLQIDPS  230 (243)
Q Consensus       210 ~~g~~~~A~~~~~~al~~~p~  230 (243)
                      ..|++++|...+.+++..+|+
T Consensus        80 ~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          80 KLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHhHHHHHHHHHHHHccCCC
Confidence            999999999999999998874

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.45  E-value=2.9e-12  Score=100.15  Aligned_cols=144  Identities=19%  Similarity=0.138  Sum_probs=118.9

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRC  171 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la  171 (243)
                      .|..+...|++++|...+++++...|.    ......+++.+|.++...|++++|+..|+++++.+|+++ ...+++.+|
T Consensus        39 ~g~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g  114 (235)
T TIGR03302        39 EAKEALDSGDYTEAIKYFEALESRYPF----SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRG  114 (235)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC----chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHH
Confidence            355667778999999999999887761    113446789999999999999999999999999999876 223788999


Q ss_pred             HHHHHc--------CCHHHHHHHHHHHHHhCCCcHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145          172 LARLTM--------GNFSAALEDVREALELAPNYTEAY-----------------ICQGDVFLAMDQYDAAEKSYSTCLQ  226 (243)
Q Consensus       172 ~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~~A~~~~~~al~  226 (243)
                      .++...        |++++|+..+++++..+|++..++                 ..+|..|...|++++|+..+.+++.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~  194 (235)
T TIGR03302       115 LSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVE  194 (235)
T ss_pred             HHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            999886        889999999999999999885432                 4678889999999999999999999


Q ss_pred             cCCCch---hhhhhhhh
Q 026145          227 IDPSIR---RSKSFKVS  240 (243)
Q Consensus       227 ~~p~~~---~~~~~~a~  240 (243)
                      ..|+.+   .++..++.
T Consensus       195 ~~p~~~~~~~a~~~l~~  211 (235)
T TIGR03302       195 NYPDTPATEEALARLVE  211 (235)
T ss_pred             HCCCCcchHHHHHHHHH
Confidence            988754   55555443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.45  E-value=1.8e-12  Score=118.78  Aligned_cols=136  Identities=18%  Similarity=0.186  Sum_probs=111.1

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHH
Q 026145           96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL  175 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~  175 (243)
                      .+...|++++|.+.+++.+...|       .+...++.+|.++...|++++|+..|+++++..|+++  .++.+++.++.
T Consensus       745 ~~~~~g~~~~A~~~~~~~l~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~  815 (899)
T TIGR02917       745 ALLASGNTAEAVKTLEAWLKTHP-------NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNA--VVLNNLAWLYL  815 (899)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHH
Confidence            34455666666666666666665       5567788888888888888888888888888888876  88888888888


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       176 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ..|+ .+|+..+++++...|+++..+..+|.++...|++++|+..++++++.+|.++.++..++.+
T Consensus       816 ~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  880 (899)
T TIGR02917       816 ELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALA  880 (899)
T ss_pred             hcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence            8888 7788888888888888888888899999999999999999999999999888887776654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.45  E-value=9e-13  Score=102.31  Aligned_cols=114  Identities=18%  Similarity=0.172  Sum_probs=105.2

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      +|.-....++|..|+..|.+++...|       .++..|.++|.+|.+.|.|+.|++.++.+|.++|...  .+|..+|.
T Consensus        87 eGN~~m~~~~Y~eAv~kY~~AI~l~P-------~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ys--kay~RLG~  157 (304)
T KOG0553|consen   87 EGNKLMKNKDYQEAVDKYTEAIELDP-------TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYS--KAYGRLGL  157 (304)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhcCC-------CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHH--HHHHHHHH
Confidence            45555667799999999999999999       9999999999999999999999999999999999966  99999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 026145          173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYD  215 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  215 (243)
                      +|+.+|++.+|++.|+++|.++|++...+.+|..+-.+++...
T Consensus       158 A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  158 AYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999988877777655

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.45  E-value=6.9e-13  Score=83.27  Aligned_cols=65  Identities=26%  Similarity=0.517  Sum_probs=50.0

Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCC
Q 026145          165 VLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMD-QYDAAEKSYSTCLQIDP  229 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p  229 (243)
                      ..|..+|.+++..|+|++|+..|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            667777777777777777777777777777777777777777777777 67777777777777776

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.44  E-value=1.1e-11  Score=92.19  Aligned_cols=109  Identities=18%  Similarity=0.235  Sum_probs=98.1

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 026145          124 KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYI  202 (243)
Q Consensus       124 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  202 (243)
                      ....+..++.+|..+...|++++|+.+|++++...|+.. ...++.++|.++..+|++++|+..+++++...|.+..++.
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  110 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN  110 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            346778899999999999999999999999998876532 2368999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCC--------------HHHHHHHHHHHhccCCCch
Q 026145          203 CQGDVFLAMDQ--------------YDAAEKSYSTCLQIDPSIR  232 (243)
Q Consensus       203 ~la~~~~~~g~--------------~~~A~~~~~~al~~~p~~~  232 (243)
                      .+|.++..+|+              +++|.+.+++++..+|++.
T Consensus       111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence            99999999887              6889999999999999864

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.44  E-value=5.7e-12  Score=96.10  Aligned_cols=135  Identities=21%  Similarity=0.144  Sum_probs=117.4

Q ss_pred             EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc
Q 026145           98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM  177 (243)
Q Consensus        98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~  177 (243)
                      ...|+-+....+........+       .+...+...|...+..|+|.+|+..+.++....|++.  .+|+.+|.+|.+.
T Consensus        77 ~~~G~a~~~l~~~~~~~~~~~-------~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~--~~~~~lgaaldq~  147 (257)
T COG5010          77 YLRGDADSSLAVLQKSAIAYP-------KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW--EAWNLLGAALDQL  147 (257)
T ss_pred             HhcccccchHHHHhhhhccCc-------ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh--hhhhHHHHHHHHc
Confidence            334456666666666555554       5555666689999999999999999999999999988  9999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       178 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      |++++|...|.+++++.|+++.+..|+|..|.-.|+++.|...+..+...-+.+..+..+++.+
T Consensus       148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~  211 (257)
T COG5010         148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALV  211 (257)
T ss_pred             cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999888888887776643

>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH

Probab=99.43  E-value=6.7e-13  Score=85.35  Aligned_cols=70  Identities=23%  Similarity=0.512  Sum_probs=61.6

Q ss_pred             CcEEEEccCCccCccCHHHHHHHHHhc-CC--------CcEEEEeeCCCCCCCCCCeEEEecCCeEEEecCCHhHHHHHH
Q 026145           40 LKELRVCTNRTCRRQGSMQILETLSSL-AP--------PEVAVKSCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEIL  110 (243)
Q Consensus        40 ~~~i~vC~~~~c~~~G~~~~~~~l~~~-g~--------~~v~v~~~gc~g~c~~~p~~~~~~~g~~~~~~~~~~~a~~~l  110 (243)
                      +++|.||++++|..+|+.++++++++. +.        +.|.+..++|+|.|+.+|++++  ++.+|.+. +++++.+++
T Consensus         1 ~~~i~vC~~~~C~~~G~~~ll~~l~~~l~~~~g~~~~dg~~~l~~~~ClG~C~~gP~~~v--~~~~~~~~-~~e~i~~il   77 (80)
T cd03081           1 RHVLKLCRAEACQAMGAEALAAHIKARLGIDFHETTADGSVTLEPVYCLGLCACSPAAMI--DGEVHGRV-DPEKFDALL   77 (80)
T ss_pred             CeEEEEcCChHHHhCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEEeeecCccCCCCEEEE--CCEEECCC-CHHHHHHHH
Confidence            378999999999999999999999983 31        2599999999999999999987  88999999 999998887


Q ss_pred             HH
Q 026145          111 MV  112 (243)
Q Consensus       111 ~~  112 (243)
                      ++
T Consensus        78 ~~   79 (80)
T cd03081          78 AE   79 (80)
T ss_pred             Hc
Confidence            64

FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.42  E-value=3.8e-12  Score=93.34  Aligned_cols=116  Identities=27%  Similarity=0.467  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc---hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG---IHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYI  202 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  202 (243)
                      ..+..+..-|+.++..|+|.+|..-|..||.+-|..+   .+..|.|+|.++++++.++.|+..+.++|+++|.+..++.
T Consensus        93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~  172 (271)
T KOG4234|consen   93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE  172 (271)
T ss_pred             HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence            4566778889999999999999999999999988653   3468899999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          203 CQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       203 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ++|.+|.++.+|++|++.|.+.+..+|...++....+++
T Consensus       173 RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  173 RRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL  211 (271)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence            999999999999999999999999999988887666553

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.42  E-value=2.6e-12  Score=107.31  Aligned_cols=141  Identities=19%  Similarity=0.155  Sum_probs=123.2

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----------
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----------  162 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----------  162 (243)
                      .|..+...|+..+|.-.|+.++..+|       .++.+|..+|.+....++-..|+..+.++++++|++.          
T Consensus       291 eG~~lm~nG~L~~A~LafEAAVkqdP-------~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSy  363 (579)
T KOG1125|consen  291 EGCNLMKNGDLSEAALAFEAAVKQDP-------QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSY  363 (579)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHhhCh-------HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            45666777889999999999999999       9999999999999999999999999999999998872          


Q ss_pred             -----------------------------------------------------------------hHHHHHhHHHHHHHc
Q 026145          163 -----------------------------------------------------------------IHVLYKDRCLARLTM  177 (243)
Q Consensus       163 -----------------------------------------------------------------~~~~~~~la~~~~~~  177 (243)
                                                                                       .++++..||.+|...
T Consensus       364 tNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls  443 (579)
T KOG1125|consen  364 TNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS  443 (579)
T ss_pred             hhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence                                                                             024556788888888


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       178 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      |+|+.|+.+|+.||..+|++...|..||-.+....+.++|+..|++|+++.|...+++.+++-
T Consensus       444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgI  506 (579)
T KOG1125|consen  444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGI  506 (579)
T ss_pred             hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhh
Confidence            899999999999999999999999999999999999999999999999999998888877653

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.42  E-value=3.1e-12  Score=107.31  Aligned_cols=131  Identities=24%  Similarity=0.247  Sum_probs=89.8

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc---hHHHHHhH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG---IHVLYKDR  170 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~l  170 (243)
                      +..|...|++++|...|++.+...|       ....++..++.++...|++++|++.+++++...|.+.   ....+..+
T Consensus       114 a~~~~~~g~~~~A~~~~~~~l~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l  186 (389)
T PRK11788        114 GQDYLKAGLLDRAEELFLQLVDEGD-------FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL  186 (389)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHcCCc-------chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            4445566677777777777776554       4455666677777777777777777777776665542   11345566


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145          171 CLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI  231 (243)
Q Consensus       171 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  231 (243)
                      |.++...|++++|+..++++++.+|++..+++.+|.++...|++++|++.+++++..+|++
T Consensus       187 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  247 (389)
T PRK11788        187 AQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY  247 (389)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence            7777777777777777777777777777777777777777777777777777777766654

>PLN02789 farnesyltranstransferase

Probab=99.42  E-value=4.7e-12  Score=102.63  Aligned_cols=131  Identities=11%  Similarity=0.008  Sum_probs=118.5

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCH--HHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCC
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANF--SEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN  179 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~  179 (243)
                      .++++++.+++++..+|       .+..+|..++.++.+.++.  ++++.+++++++.+|++.  .+|..++.++..+|+
T Consensus        87 ~l~eeL~~~~~~i~~np-------knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy--~AW~~R~w~l~~l~~  157 (320)
T PLN02789         87 DLEEELDFAEDVAEDNP-------KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNY--HAWSHRQWVLRTLGG  157 (320)
T ss_pred             hHHHHHHHHHHHHHHCC-------cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHhhh
Confidence            57899999999999998       8888999999999888874  788999999999999987  999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CCH----HHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          180 FSAALEDVREALELAPNYTEAYICQGDVFLAM---DQY----DAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       180 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      |++|++.++++|+.+|.+..+|..++.++...   |.+    ++++++..+++.++|++..+|.++..+
T Consensus       158 ~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~l  226 (320)
T PLN02789        158 WEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGL  226 (320)
T ss_pred             HHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Confidence            99999999999999999999999999998876   333    478888899999999999999887654

>cd03083 TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, hoxF; composed of proteins similar to the NAD-reducing hydrogenase (hoxS) alpha subunit of Alcaligenes eutrophus H16

Probab=99.41  E-value=1.3e-12  Score=83.95  Aligned_cols=70  Identities=26%  Similarity=0.392  Sum_probs=61.4

Q ss_pred             CcEEEEccCCccCccCHHHHHHHHHh-cCC--------CcEEEEeeCCCCCCCCCCeEEEecCCeEEEecCCHhHHHHHH
Q 026145           40 LKELRVCTNRTCRRQGSMQILETLSS-LAP--------PEVAVKSCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEIL  110 (243)
Q Consensus        40 ~~~i~vC~~~~c~~~G~~~~~~~l~~-~g~--------~~v~v~~~gc~g~c~~~p~~~~~~~g~~~~~~~~~~~a~~~l  110 (243)
                      +++|.||++++|...|++++++++++ ++.        +.+.+..+||+|.|..+|.+.+  ++.+|.++ +++++.+++
T Consensus         1 ~~~i~vC~~~~C~~~Ga~~v~~~l~~~l~~~~~~~t~d~~v~l~~~gClG~C~~~P~v~V--~~~~y~~v-~~~~v~~iv   77 (80)
T cd03083           1 KYRIYLSDSITDRMNGYKAVLDALCRELGIRFGEVDEDGMVGLFFTSCTGLCDQGPALLI--NNRVFTRL-TPGRIDQIA   77 (80)
T ss_pred             CEEEEEcCChHHHhCCHHHHHHHHHHHHCCCCCCcCCCCeEEEEEeceecCcCCCCeEEE--CCEEECCC-CHHHHHHHH
Confidence            47899999999999999999999999 321        2589999999999999999988  67899888 999999887


Q ss_pred             HH
Q 026145          111 MV  112 (243)
Q Consensus       111 ~~  112 (243)
                      +.
T Consensus        78 ~~   79 (80)
T cd03083          78 EL   79 (80)
T ss_pred             hc
Confidence            64

HoxS is a cytoplasmic hydrogenase catalyzing the oxidation of molecular hydrogen accompanied by the reduction of NAD. It is composed of four structural subunits encoded by the genes hoxF, hoxU, hoxY and hoxH. The hoxF protein (or alpha subunit) is a fusion protein containing an N-terminal NuoE-like domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. HoxF may be involved

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.41  E-value=2e-12  Score=106.12  Aligned_cols=127  Identities=18%  Similarity=0.265  Sum_probs=120.0

Q ss_pred             eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHH
Q 026145           95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLAR  174 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~  174 (243)
                      ..|....+.++..+.|..+...+|       .++..|+.+|..++-.++|++|+..|++++.++|++.  -++..++.+.
T Consensus       368 ~~y~d~~~~~~~~~~F~~A~~ldp-------~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~--~~~iQl~~a~  438 (606)
T KOG0547|consen  368 AAYADENQSEKMWKDFNKAEDLDP-------ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENA--YAYIQLCCAL  438 (606)
T ss_pred             HHHhhhhccHHHHHHHHHHHhcCC-------CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhh--HHHHHHHHHH
Confidence            345555588899999999999998       8899999999999999999999999999999999987  8899999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 026145          175 LTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS  230 (243)
Q Consensus       175 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  230 (243)
                      ++++++++++..|+.+++..|+.++.+...|.++..+++++.|++.|.+++.+.|.
T Consensus       439 Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  439 YRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR  494 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence            99999999999999999999999999999999999999999999999999999998

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.40  E-value=1.1e-12  Score=82.33  Aligned_cols=67  Identities=31%  Similarity=0.524  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 026145          127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMG-NFSAALEDVREALELAP  195 (243)
Q Consensus       127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p  195 (243)
                      ++..|+.+|..++..|+|++|+..|+++++.+|+++  .+++++|.++..+| ++.+|+..++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~--~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA--EAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH--HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            367899999999999999999999999999999987  99999999999999 79999999999999998

...

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.40  E-value=3.1e-12  Score=97.08  Aligned_cols=100  Identities=17%  Similarity=0.131  Sum_probs=93.1

Q ss_pred             hcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHcCC--HHHH
Q 026145          141 KANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVF-LAMDQ--YDAA  217 (243)
Q Consensus       141 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A  217 (243)
                      .++.++++..+++++..+|++.  .+|..+|.++..+|++++|+..|+++++++|+++.++..+|.++ ...|+  +++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~--~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNS--EQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            6778999999999999999988  99999999999999999999999999999999999999999975 67787  5999


Q ss_pred             HHHHHHHhccCCCchhhhhhhhhcc
Q 026145          218 EKSYSTCLQIDPSIRRSKSFKVSST  242 (243)
Q Consensus       218 ~~~~~~al~~~p~~~~~~~~~a~i~  242 (243)
                      .+.++++++++|+++.++.+++.++
T Consensus       130 ~~~l~~al~~dP~~~~al~~LA~~~  154 (198)
T PRK10370        130 REMIDKALALDANEVTALMLLASDA  154 (198)
T ss_pred             HHHHHHHHHhCCCChhHHHHHHHHH
Confidence            9999999999999999998887654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.40  E-value=1e-11  Score=104.18  Aligned_cols=129  Identities=17%  Similarity=0.123  Sum_probs=88.7

Q ss_pred             EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc
Q 026145           98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM  177 (243)
Q Consensus        98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~  177 (243)
                      ...|++++|...+++++...|       ....+++.+|..+...|++++|+..|++++..+|.+ ...++..++.++...
T Consensus       191 ~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~~l~~~~~~~  262 (389)
T PRK11788        191 LARGDLDAARALLKKALAADP-------QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY-LSEVLPKLMECYQAL  262 (389)
T ss_pred             HhCCCHHHHHHHHHHHHhHCc-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh-HHHHHHHHHHHHHHc
Confidence            345577777777777766555       445566677777777777777777777777766654 234566677777777


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhh
Q 026145          178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK  235 (243)
Q Consensus       178 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  235 (243)
                      |++++|+..++++++..|+... +..++.++...|++++|+..+.++++.+|++....
T Consensus       263 g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~  319 (389)
T PRK11788        263 GDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH  319 (389)
T ss_pred             CCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH
Confidence            7777777777777777775543 36677777777777777777777777777766544

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.40  E-value=2.8e-12  Score=117.52  Aligned_cols=136  Identities=19%  Similarity=0.227  Sum_probs=98.3

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |..+...|++++|.+.|++++...|       .....+..+|.++...|++++|+..+++++..+|.+.  .++..+|.+
T Consensus       132 ~~~~~~~~~~~~A~~~~~~a~~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~  202 (899)
T TIGR02917       132 GLAYLGLGQLELAQKSYEQALAIDP-------RSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNV--DALLLKGDL  202 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCC-------CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHH
Confidence            4445556677777777777776666       4556677777777777777777777777777777765  677777777


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhh
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFK  238 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  238 (243)
                      +...|++++|+..|++++..+|.++.+++.++.++...|++++|...+.++++..|+++.+....
T Consensus       203 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  267 (899)
T TIGR02917       203 LLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLK  267 (899)
T ss_pred             HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777666554443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens

Probab=99.40  E-value=1.9e-12  Score=81.13  Aligned_cols=68  Identities=29%  Similarity=0.568  Sum_probs=59.9

Q ss_pred             cEEEEccCCccCccCHHHHHHHHHh-cCCCcEEEEeeCCCCCCCCCCeEEEecCCeEEEecCCHhHHHHHHH
Q 026145           41 KELRVCTNRTCRRQGSMQILETLSS-LAPPEVAVKSCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILM  111 (243)
Q Consensus        41 ~~i~vC~~~~c~~~G~~~~~~~l~~-~g~~~v~v~~~gc~g~c~~~p~~~~~~~g~~~~~~~~~~~a~~~l~  111 (243)
                      ++|.||++++|+.+|+.++++++++ ++...+.+..++|+|.|+.+|++++  .+..|.+. +++++.++++
T Consensus         2 ~~I~vC~~~~C~~~Ga~~l~~~l~~~L~~~~v~l~~~~ClG~C~~gP~v~V--~~~~~~~~-t~~~i~~~~~   70 (72)
T cd03082           2 LTVRVCDSLSCAMAGAEELLAALEAGLGPEGVRVVRAPCVGRCERAPAALV--GQRPVDGA-TPAAVAAAVE   70 (72)
T ss_pred             eEEEEcCChHHHHCCHHHHHHHHHHHhCCCeEEEEecCcCCccCCCCeEEE--CCEEeCCc-CHHHHHHHHh
Confidence            5799999999999999999999999 5766899999999999999999988  56677777 8888776654

W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen

>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity

Probab=99.40  E-value=4.2e-12  Score=84.58  Aligned_cols=75  Identities=25%  Similarity=0.351  Sum_probs=65.9

Q ss_pred             cEEEEccC----CccCccCHHHHHHHHHh----cCCCcEEEEeeCCCCCCCCCCeEEEec--CCeEEEecCCHhHHHHHH
Q 026145           41 KELRVCTN----RTCRRQGSMQILETLSS----LAPPEVAVKSCGCLGRCGAGPNLVALP--DGVVVGHCGTPARASEIL  110 (243)
Q Consensus        41 ~~i~vC~~----~~c~~~G~~~~~~~l~~----~g~~~v~v~~~gc~g~c~~~p~~~~~~--~g~~~~~~~~~~~a~~~l  110 (243)
                      .+|+||++    .+|...| ..++++|++    .+..++.+..++|+|.|..+|++++||  ++.||..+ +++++.+++
T Consensus         2 ~~ilVCth~rrd~~C~~~g-~~l~~~l~~~l~~~~~~~v~v~~~~clG~c~~gp~vvvyP~~~g~wy~~v-~p~~v~~Iv   79 (97)
T cd03062           2 PLVLVCTHGKRDKRCGICG-PPLAAELRAELPEHGPGGVRVWEVSHVGGHKFAGNVIIYPKGDGIWYGRV-TPEHVPPIV   79 (97)
T ss_pred             CEEEEeCCCCCCcChhhcC-HHHHHHHHHHHHHhCCCceEEEeCCcCCccCcCCEEEEEeCCCeeEEeec-CHHHHHHHH
Confidence            68999996    4777777 688888887    455679999999999999999999999  99999999 999999999


Q ss_pred             HHHhcCC
Q 026145          111 MVLCGIK  117 (243)
Q Consensus       111 ~~~l~~~  117 (243)
                      +.++...
T Consensus        80 ~~hl~~g   86 (97)
T cd03062          80 DRLILGG   86 (97)
T ss_pred             HHHhcCC
Confidence            9888654

The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.39  E-value=1.3e-12  Score=109.09  Aligned_cols=122  Identities=16%  Similarity=0.167  Sum_probs=109.0

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHH
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFS  181 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~  181 (243)
                      ....+.++|-.+....|     ...++.....+|..|...++|+.|+..|+.||..+|+|.  ..|+.+|-.+..-.+..
T Consensus       409 ~l~~i~~~fLeaa~~~~-----~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~--~lWNRLGAtLAN~~~s~  481 (579)
T KOG1125|consen  409 HLAHIQELFLEAARQLP-----TKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDY--LLWNRLGATLANGNRSE  481 (579)
T ss_pred             HHHHHHHHHHHHHHhCC-----CCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchH--HHHHHhhHHhcCCcccH
Confidence            45566666666554443     125677888999999999999999999999999999987  99999999999999999


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 026145          182 AALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS  230 (243)
Q Consensus       182 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  230 (243)
                      +|+..|++|+++.|....+++++|+.+..+|.|++|..+|-.||.+.+.
T Consensus       482 EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  482 EAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             HHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999999999999999999999999999999876

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.39  E-value=2.2e-11  Score=90.25  Aligned_cols=125  Identities=18%  Similarity=0.149  Sum_probs=101.6

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCH
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNF  180 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~  180 (243)
                      ++..+...+...+...+     ....+..++.+|..+...|++++|+..|.+++.+.|++. ...++.++|.++...|++
T Consensus        14 ~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~   88 (168)
T CHL00033         14 TFTIVADILLRILPTTS-----GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH   88 (168)
T ss_pred             ccccchhhhhHhccCCc-----hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH
Confidence            45555666655543332     225688899999999999999999999999998876532 236899999999999999


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHhccCCCc
Q 026145          181 SAALEDVREALELAPNYTEAYICQGDVFL-------AMDQYD-------AAEKSYSTCLQIDPSI  231 (243)
Q Consensus       181 ~~A~~~~~~al~~~p~~~~~~~~la~~~~-------~~g~~~-------~A~~~~~~al~~~p~~  231 (243)
                      ++|+..+++++.++|.....+.++|.++.       .+|+++       +|...+++++..+|++
T Consensus        89 ~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~  153 (168)
T CHL00033         89 TKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN  153 (168)
T ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            99999999999999999999999999999       777766       6666777788888854

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.38  E-value=2e-12  Score=84.47  Aligned_cols=84  Identities=18%  Similarity=0.343  Sum_probs=73.4

Q ss_pred             HhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 026145          140 EKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEK  219 (243)
Q Consensus       140 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  219 (243)
                      .+|+|+.|+..|+++++..|.+.....++.+|.+++++|+|++|+..+++ ++.+|.++...+.+|.++..+|++++|++
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            36899999999999999999531226788899999999999999999999 88889888999999999999999999999


Q ss_pred             HHHHH
Q 026145          220 SYSTC  224 (243)
Q Consensus       220 ~~~~a  224 (243)
                      .|+++
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            99875

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=1.9e-11  Score=95.47  Aligned_cols=122  Identities=16%  Similarity=0.009  Sum_probs=112.7

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcC---
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMG---  178 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~---  178 (243)
                      ++++.+.-++..+..+|       .++.-|..+|.+|+..+++..|...|.+|+++.|+++  +.+..+|.+++...   
T Consensus       137 ~~~~l~a~Le~~L~~nP-------~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~--~~~~g~aeaL~~~a~~~  207 (287)
T COG4235         137 EMEALIARLETHLQQNP-------GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNP--EILLGLAEALYYQAGQQ  207 (287)
T ss_pred             cHHHHHHHHHHHHHhCC-------CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcCCc
Confidence            67888888899999998       8999999999999999999999999999999999988  99999998887654   


Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 026145          179 NFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIR  232 (243)
Q Consensus       179 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  232 (243)
                      .-.++...++++++.+|.+..+.+.+|..++..|+|.+|...++..++..|.+.
T Consensus       208 ~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         208 MTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             ccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence            367899999999999999999999999999999999999999999999987554

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.38  E-value=7.5e-12  Score=97.84  Aligned_cols=113  Identities=18%  Similarity=0.237  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---HH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTE---AY  201 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~  201 (243)
                      ..+..++.+|..++..|++++|+..|++++..+|+++ ...+++.+|.++...|++++|+..++++++.+|+++.   ++
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            5677899999999999999999999999999999864 2357899999999999999999999999999998775   79


Q ss_pred             HHHHHHHHHc--------CCHHHHHHHHHHHhccCCCchhhhhhh
Q 026145          202 ICQGDVFLAM--------DQYDAAEKSYSTCLQIDPSIRRSKSFK  238 (243)
Q Consensus       202 ~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~~  238 (243)
                      +.+|.++...        |++++|+..+++++..+|++..++..+
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~  155 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK  155 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence            9999999876        889999999999999999987765443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=2.5e-12  Score=107.17  Aligned_cols=139  Identities=14%  Similarity=0.174  Sum_probs=120.3

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCC----CCc-hHHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKP----FGG-IHVLYK  168 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p----~~~-~~~~~~  168 (243)
                      |.-|...+...-|.+.|.+++...|       .++-.+..+|.+.+..+.|.+|+.+|+.++..-+    +.. -...+.
T Consensus       387 gmey~~t~n~kLAe~Ff~~A~ai~P-------~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~  459 (611)
T KOG1173|consen  387 GMEYMRTNNLKLAEKFFKQALAIAP-------SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN  459 (611)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCC-------CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence            4555667788899999999999988       8888999999999999999999999999984322    110 124689


Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145          169 DRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       169 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  239 (243)
                      |+|.++.+++.+++|+..++++|.+.|.++.++..+|.+|..+|+.+.|++.|.+++.++|++.-+...+.
T Consensus       460 NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~  530 (611)
T KOG1173|consen  460 NLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK  530 (611)
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999976655544

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.38  E-value=1.8e-11  Score=96.45  Aligned_cols=114  Identities=13%  Similarity=-0.004  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHH-HHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHH
Q 026145          128 ALALRKRAEAE-FEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELAPNY---TEAYI  202 (243)
Q Consensus       128 ~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~  202 (243)
                      ...++..|..+ ++.|+|++|+..|++.+..+|++. ...+++.+|.+|+..|++++|+..|+++++..|++   +++++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            45677777776 567999999999999999999874 24789999999999999999999999999988874   78999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          203 CQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       203 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      .+|.++..+|++++|...|+++++..|++..+.....++
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL  260 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL  260 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence            999999999999999999999999999998877665543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.37  E-value=1.1e-11  Score=102.55  Aligned_cols=106  Identities=20%  Similarity=0.146  Sum_probs=99.2

Q ss_pred             EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc
Q 026145           98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM  177 (243)
Q Consensus        98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~  177 (243)
                      ...|++++|++.|++++...|       ..+.+++.+|.++...|++++|+..+++++.++|.++  .+|+.+|.+++.+
T Consensus        13 ~~~~~~~~Ai~~~~~Al~~~P-------~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~--~a~~~lg~~~~~l   83 (356)
T PLN03088         13 FVDDDFALAVDLYTQAIDLDP-------NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLA--KAYLRKGTACMKL   83 (356)
T ss_pred             HHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH--HHHHHHHHHHHHh
Confidence            456799999999999999998       7788999999999999999999999999999999987  9999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 026145          178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMD  212 (243)
Q Consensus       178 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  212 (243)
                      |+|++|+..|+++++++|+++.+...++.+...+.
T Consensus        84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988877663

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.36  E-value=3.7e-12  Score=78.90  Aligned_cols=64  Identities=25%  Similarity=0.441  Sum_probs=38.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 026145          169 DRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIR  232 (243)
Q Consensus       169 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  232 (243)
                      .+|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++|
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            3455666666666666666666666666666666666666666666666666666666666553

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.36  E-value=3.1e-11  Score=109.47  Aligned_cols=140  Identities=10%  Similarity=-0.041  Sum_probs=121.4

Q ss_pred             EecCCHhHHHHHHHHHhcCCCCCc-------ch-hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHh
Q 026145           98 GHCGTPARASEILMVLCGIKSDHD-------AA-KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKD  169 (243)
Q Consensus        98 ~~~~~~~~a~~~l~~~l~~~~~~~-------~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~  169 (243)
                      ...|++++|...++.+....|...       .. ......++..+|..+...|++++|++.+++++...|.+.  .++..
T Consensus       321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~--~l~~~  398 (765)
T PRK10049        321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ--GLRID  398 (765)
T ss_pred             HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHH
Confidence            455788888888888776654110       00 012345678899999999999999999999999999987  99999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145          170 RCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       170 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  239 (243)
                      +|.++...|++++|+..+++++.++|++..+++.+|.++..+|++++|+..++++++.+|+++.+..+.+
T Consensus       399 lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~  468 (765)
T PRK10049        399 YASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLAR  468 (765)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999998876544

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.36  E-value=5.8e-12  Score=99.49  Aligned_cols=112  Identities=25%  Similarity=0.291  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG  205 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  205 (243)
                      ..+.-.+.+|..++..|++..|+..|..|++.+|++-  .+++.+|.+|+.+|+-..|+.++.++|++.|+...+..++|
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y--~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg  113 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNY--QAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG  113 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhH--HHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence            6677788999999999999999999999999999966  99999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145          206 DVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  239 (243)
                      .++.++|++++|+..|..++..+|++........
T Consensus       114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqs  147 (504)
T KOG0624|consen  114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQS  147 (504)
T ss_pred             hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHH
Confidence            9999999999999999999999997665544433

>PRK15331 chaperone protein SicA; Provisional

Probab=99.35  E-value=2.2e-11  Score=87.45  Aligned_cols=108  Identities=13%  Similarity=0.051  Sum_probs=100.3

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 026145          125 NLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQ  204 (243)
Q Consensus       125 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  204 (243)
                      .......+..|..++..|++++|...|.-....+|.++  +.|..+|.|+..+++|++|+..|..+..++++++...+..
T Consensus        34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~--~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a  111 (165)
T PRK15331         34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNP--DYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT  111 (165)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence            36677889999999999999999999999999999987  9999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhccCCCchhhh
Q 026145          205 GDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK  235 (243)
Q Consensus       205 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  235 (243)
                      |.||..+|+.++|...|..++. .|.++.+.
T Consensus       112 gqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~  141 (165)
T PRK15331        112 GQCQLLMRKAAKARQCFELVNE-RTEDESLR  141 (165)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHh-CcchHHHH
Confidence            9999999999999999999998 56665554

>PRK12373 NADH dehydrogenase subunit E; Provisional

Probab=99.33  E-value=3.1e-12  Score=104.13  Aligned_cols=98  Identities=21%  Similarity=0.340  Sum_probs=80.9

Q ss_pred             CcccccccccccceeecCCCCcccccccccccccCCC-cEEEEccCCccCccCHHHHHHHHHh-cCC--------CcEEE
Q 026145            4 GFGLAFNSVLPVARLRLPSNDKSFCFPLPRARINAEL-KELRVCTNRTCRRQGSMQILETLSS-LAP--------PEVAV   73 (243)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~vC~~~~c~~~G~~~~~~~l~~-~g~--------~~v~v   73 (243)
                      .+||+...|++|.+|      +     .+..+.+.++ ++|.||+++.|+.+|+.+|++.+++ +|+        +.+++
T Consensus        64 ~Lgvp~~~V~eVATF------Y-----tmF~~~P~Gk~~~I~VC~~t~C~l~Ga~~ll~~le~~Lgik~GeTT~DG~FTL  132 (400)
T PRK12373         64 MLDMAYIRVLEVATF------Y-----TQFQLQPVGTRAHIQVCGTTPCMLRGSEALMAVCKSKIHAHPHELNADGTLSW  132 (400)
T ss_pred             HhCCCHHHHHHHHHH------h-----hcccccCCCCceEEEEcCChHHHhCChHHHHHHHHHHhCCCCCCcCCCCeEEE
Confidence            467888888888555      3     3333445576 7999999999999999999999998 443        25899


Q ss_pred             EeeCCCCCCCCCCeEEEecCCeEEEecCCHhHHHHHHHHHhc
Q 026145           74 KSCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMVLCG  115 (243)
Q Consensus        74 ~~~gc~g~c~~~p~~~~~~~g~~~~~~~~~~~a~~~l~~~l~  115 (243)
                      ..+.|+|.|..+|++.|  ++..|..+ +++++.+++..+-.
T Consensus       133 e~veCLGaC~~APv~~I--nd~~y~~L-Tpe~v~~IL~~l~a  171 (400)
T PRK12373        133 EEVECLGACVNAPMVQI--GKDYYEDL-TPERLEEIIDAFAA  171 (400)
T ss_pred             EeeeecCccCCCCeEEE--CCEEeCCC-CHHHHHHHHHHHhC
Confidence            99999999999999977  77888888 99999999988764

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.33  E-value=5.2e-11  Score=85.14  Aligned_cols=95  Identities=12%  Similarity=0.007  Sum_probs=88.7

Q ss_pred             ecCCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhH
Q 026145           91 LPDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDR  170 (243)
Q Consensus        91 ~~~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l  170 (243)
                      |.-+..+...|++++|..+|+-+...+|       .++..|+.+|.++..+|+|++|+..|.+++.++|+++  .++++.
T Consensus        39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp-------~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp--~~~~~a  109 (157)
T PRK15363         39 YRYAMQLMEVKEFAGAARLFQLLTIYDA-------WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP--QAPWAA  109 (157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCc-------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc--hHHHHH
Confidence            4445566778899999999999999998       9999999999999999999999999999999999998  999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC
Q 026145          171 CLARLTMGNFSAALEDVREALELA  194 (243)
Q Consensus       171 a~~~~~~~~~~~A~~~~~~al~~~  194 (243)
                      |.|++..|+.+.|...|+.++...
T Consensus       110 g~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        110 AECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999876

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.33  E-value=4.8e-12  Score=101.60  Aligned_cols=126  Identities=19%  Similarity=0.202  Sum_probs=95.6

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      .+.++...|++++|.+.+++++...|       .+...+..++..+...|+++++.+.+.......|.++  ..+..+|.
T Consensus       152 ~a~~~~~~G~~~~A~~~~~~al~~~P-------~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~--~~~~~la~  222 (280)
T PF13429_consen  152 LAEIYEQLGDPDKALRDYRKALELDP-------DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDP--DLWDALAA  222 (280)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHH-T-------T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC--CHCHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH--HHHHHHHH
Confidence            35567788999999999999999998       8888899999999999999998888888888878877  88999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145          173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQI  227 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  227 (243)
                      ++..+|++++|+.+++++++.+|+++..+..+|.++...|+.++|...+.+++..
T Consensus       223 ~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  223 AYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred             Hhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999999999999999999988753

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.32  E-value=5.7e-11  Score=97.80  Aligned_cols=132  Identities=15%  Similarity=0.105  Sum_probs=108.7

Q ss_pred             eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHH
Q 026145           95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLAR  174 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~  174 (243)
                      ..+...|.++.|...++.++...|       +++..+-..+.++++.++.++|++.+++++.++|..+  ..+.++|.++
T Consensus       314 ~~~~~~~~~d~A~~~l~~L~~~~P-------~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~--~l~~~~a~al  384 (484)
T COG4783         314 LQTYLAGQYDEALKLLQPLIAAQP-------DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP--LLQLNLAQAL  384 (484)
T ss_pred             HHHHHhcccchHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc--HHHHHHHHHH
Confidence            344556688888888888888887       7788888888899999999999999999999999876  8888889999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhh
Q 026145          175 LTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK  235 (243)
Q Consensus       175 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  235 (243)
                      ++.|++.+|+..++..+..+|+++..|..+|.+|..+|+..+|...+.+...+...-..+.
T Consensus       385 l~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~  445 (484)
T COG4783         385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAI  445 (484)
T ss_pred             HhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHH
Confidence            9999999999999998888899888888888888888887777777777766665544443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.32  E-value=1.9e-11  Score=96.04  Aligned_cols=139  Identities=11%  Similarity=-0.015  Sum_probs=125.2

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHH
Q 026145           96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLAR  174 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~  174 (243)
                      .|...++|+-|..+|++.+..+.       ..++.+.++|.+++..++++-++..|++|+....++. -+++|+|+|.+.
T Consensus       333 ~yfY~~~PE~AlryYRRiLqmG~-------~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~va  405 (478)
T KOG1129|consen  333 GYFYDNNPEMALRYYRRILQMGA-------QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVA  405 (478)
T ss_pred             ccccCCChHHHHHHHHHHHHhcC-------CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeE
Confidence            44556699999999999998886       7788999999999999999999999999998754221 468999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          175 LTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       175 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ...|++..|-++|+-++..+|++.+++.++|++-.+.|+.++|...++.+-...|+-.+...+++.+
T Consensus       406 V~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~  472 (478)
T KOG1129|consen  406 VTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM  472 (478)
T ss_pred             EeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence            9999999999999999999999999999999999999999999999999999999988877766554

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.31  E-value=1.3e-11  Score=76.46  Aligned_cols=65  Identities=23%  Similarity=0.256  Sum_probs=60.2

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 026145          132 RKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYT  198 (243)
Q Consensus       132 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  198 (243)
                      +.+|..++..|++++|+..|+++++.+|++.  .+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~--~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNP--EAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHH--HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            4679999999999999999999999999977  9999999999999999999999999999999875

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.30  E-value=9.6e-11  Score=89.01  Aligned_cols=135  Identities=16%  Similarity=0.137  Sum_probs=116.5

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      .+..+...|.+++|+++++..+..+|       .+...+...--+.-.+|+--+|++.....++..+.|.  ++|..++.
T Consensus        92 kam~lEa~~~~~~A~e~y~~lL~ddp-------t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~--EAW~eLae  162 (289)
T KOG3060|consen   92 KAMLLEATGNYKEAIEYYESLLEDDP-------TDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQ--EAWHELAE  162 (289)
T ss_pred             HHHHHHHhhchhhHHHHHHHHhccCc-------chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcH--HHHHHHHH
Confidence            34556677899999999999998887       5555666666666778888899999999999999988  99999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCCchhhhh
Q 026145          173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMD---QYDAAEKSYSTCLQIDPSIRRSKS  236 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~  236 (243)
                      +|+..|+|++|.-++++.+-+.|.++-.+..+|.+++-+|   +++-|..+|.++++++|.+..++.
T Consensus       163 iY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~  229 (289)
T KOG3060|consen  163 IYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALF  229 (289)
T ss_pred             HHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence            9999999999999999999999999999999999998877   567799999999999997766653

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.30  E-value=2e-11  Score=87.01  Aligned_cols=91  Identities=13%  Similarity=0.147  Sum_probs=85.9

Q ss_pred             HHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145          149 GFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID  228 (243)
Q Consensus       149 ~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  228 (243)
                      +.|++++..+|++.  .+.+.+|.++...|++++|++.+++++..+|.++.++..+|.++...|++++|+..+++++..+
T Consensus         4 ~~~~~~l~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552         4 ATLKDLLGLDSEQL--EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD   81 (135)
T ss_pred             hhHHHHHcCChhhH--HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            56889999999986  8899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhhhhhhhhc
Q 026145          229 PSIRRSKSFKVSS  241 (243)
Q Consensus       229 p~~~~~~~~~a~i  241 (243)
                      |+++..+..++.+
T Consensus        82 p~~~~~~~~la~~   94 (135)
T TIGR02552        82 PDDPRPYFHAAEC   94 (135)
T ss_pred             CCChHHHHHHHHH
Confidence            9999998877765

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.28  E-value=2.5e-10  Score=80.26  Aligned_cols=116  Identities=19%  Similarity=0.240  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELAPNYT---EAY  201 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~  201 (243)
                      ..+..++..|...++.|+|.+|++.|+.+....|-.. ...+...++.+|+..++|++|+..+++.++++|.++   .++
T Consensus         8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~   87 (142)
T PF13512_consen    8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY   87 (142)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            4467899999999999999999999999999998764 347889999999999999999999999999999875   589


Q ss_pred             HHHHHHHHHcCC---------------HHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          202 ICQGDVFLAMDQ---------------YDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       202 ~~la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      +.+|.+++.+..               ..+|...|++.+...|+++-+-...+++
T Consensus        88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~~R~  142 (142)
T PF13512_consen   88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADARKRM  142 (142)
T ss_pred             HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHHhcC
Confidence            999999999887               8899999999999999998887766553

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.28  E-value=1.6e-10  Score=83.44  Aligned_cols=121  Identities=25%  Similarity=0.297  Sum_probs=99.8

Q ss_pred             cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcC
Q 026145          100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMG  178 (243)
Q Consensus       100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~  178 (243)
                      .++...+.+.++......|    .+.....+.+.+|..++..|++++|+..|++++...|++. ...+...++.+++..|
T Consensus        24 ~~~~~~~~~~~~~l~~~~~----~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~   99 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYP----SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQG   99 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCC----CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC
Confidence            4577888887888776665    1224567888999999999999999999999999886653 2357888999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 026145          179 NFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCL  225 (243)
Q Consensus       179 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  225 (243)
                      +|++|+..++.+ .-.+-.+.++..+|.+|...|++++|+..|++++
T Consensus       100 ~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  100 QYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             CHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            999999999763 3345557788899999999999999999999875

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.27  E-value=1.3e-10  Score=100.19  Aligned_cols=129  Identities=22%  Similarity=0.191  Sum_probs=116.1

Q ss_pred             EEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHH
Q 026145           97 VGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLT  176 (243)
Q Consensus        97 ~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~  176 (243)
                      +...+..+++..-+.++-+..+       ..+..|+..|..+..+|++.+|.+.|..|+.++|++.  .....+|.++..
T Consensus       660 ~~~~~~~~~a~~CL~Ea~~~~~-------l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv--~s~~Ala~~lle  730 (799)
T KOG4162|consen  660 FLLSGNDDEARSCLLEASKIDP-------LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV--PSMTALAELLLE  730 (799)
T ss_pred             HHhcCCchHHHHHHHHHHhcch-------hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHH
Confidence            3344466677666666766666       7888999999999999999999999999999999998  999999999999


Q ss_pred             cCCHHHHHH--HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhh
Q 026145          177 MGNFSAALE--DVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRS  234 (243)
Q Consensus       177 ~~~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  234 (243)
                      .|+..-|..  .+..+++++|.++++|+.+|.++.++|+.++|.++|+.++++++.+|..
T Consensus       731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~  790 (799)
T KOG4162|consen  731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVL  790 (799)
T ss_pred             hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcc
Confidence            999888887  9999999999999999999999999999999999999999999988754

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.27  E-value=1.4e-10  Score=89.63  Aligned_cols=112  Identities=16%  Similarity=0.135  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHH
Q 026145          129 LALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELAPNY---TEAYICQ  204 (243)
Q Consensus       129 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l  204 (243)
                      ...|+.|..+++.|+|..|...|..-++..|++. .+.+++.||.+++.+|+|++|...|..+.+-.|++   +++++.+
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            3488999999999999999999999999999886 46899999999999999999999999999988865   6889999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          205 GDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       205 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      |.+...+|+.++|...|+++++..|+.+.+......
T Consensus       222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~  257 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVA  257 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            999999999999999999999999999888765544

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.27  E-value=1.4e-10  Score=101.33  Aligned_cols=125  Identities=21%  Similarity=0.202  Sum_probs=119.5

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHH
Q 026145           96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL  175 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~  175 (243)
                      .....|+.++|.+++.+.+.+.|       ..+.+|+.+|.+|..+|+..++...+-.|-.++|.+.  ..|..++....
T Consensus       148 ~lfarg~~eeA~~i~~EvIkqdp-------~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~--e~W~~ladls~  218 (895)
T KOG2076|consen  148 NLFARGDLEEAEEILMEVIKQDP-------RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY--ELWKRLADLSE  218 (895)
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCc-------cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHH
Confidence            33445799999999999999999       9999999999999999999999999999999999987  99999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 026145          176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP  229 (243)
Q Consensus       176 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  229 (243)
                      ++|++++|.-+|.+||+.+|.+.+..+..+.+|.++|+...|...|.+++.++|
T Consensus       219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            999999999999999999999999999999999999999999999999999999

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.26  E-value=3e-10  Score=89.98  Aligned_cols=147  Identities=17%  Similarity=0.246  Sum_probs=126.4

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchh--------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAK--------NLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIH  164 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~  164 (243)
                      .|..+.+.|.++.|..-|+..+...|......        ......+......++..|++..|+++..+.|++.|.+.  
T Consensus       112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda--  189 (504)
T KOG0624|consen  112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDA--  189 (504)
T ss_pred             hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchh--
Confidence            47788889999999999999998876332221        11222344455566778999999999999999999987  


Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          165 VLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ..+..++.||...|+...|+.+++.+-++..++.+.++.++.+++..|+.+.++...+++++++|++...+-+++++
T Consensus       190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKkl  266 (504)
T KOG0624|consen  190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKL  266 (504)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888776654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.25  E-value=1.5e-10  Score=95.39  Aligned_cols=114  Identities=18%  Similarity=0.120  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG  205 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  205 (243)
                      ....++|..+..++..+++++|+..++..+...|+|+  .++...+.+++..++.++|++.+++++.++|+.+..+.++|
T Consensus       304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~--~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a  381 (484)
T COG4783         304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP--YYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA  381 (484)
T ss_pred             cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence            4456788999999999999999999999999999988  88888999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          206 DVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      .+|.+.|++.+|+..++..+.-+|+++..|.++++.
T Consensus       382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqa  417 (484)
T COG4783         382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQA  417 (484)
T ss_pred             HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHH
Confidence            999999999999999999999999999999998874

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.25  E-value=2.7e-10  Score=86.60  Aligned_cols=135  Identities=18%  Similarity=0.130  Sum_probs=117.9

Q ss_pred             cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCC
Q 026145          100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN  179 (243)
Q Consensus       100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~  179 (243)
                      .+..+.|...+.++....|       ...+.....|..+...|+|++|+++|+..++-+|.|.  .++-..-.+...+|+
T Consensus        65 ~~~~~lAq~C~~~L~~~fp-------~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~--v~~KRKlAilka~GK  135 (289)
T KOG3060|consen   65 TGRDDLAQKCINQLRDRFP-------GSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDT--VIRKRKLAILKAQGK  135 (289)
T ss_pred             hcchHHHHHHHHHHHHhCC-------CChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchh--HHHHHHHHHHHHcCC
Confidence            3466777777777665555       5566777788899999999999999999999999987  777777777788999


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhccC
Q 026145          180 FSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSSTY  243 (243)
Q Consensus       180 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i~~  243 (243)
                      -.+|++.+..-++..+.+.++|..++.+|...|+|++|.-++++.+-++|.++.....++.+.|
T Consensus       136 ~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Y  199 (289)
T KOG3060|consen  136 NLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLY  199 (289)
T ss_pred             cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999988887776643

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.23  E-value=3.3e-11  Score=75.31  Aligned_cols=67  Identities=27%  Similarity=0.414  Sum_probs=51.3

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          175 LTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       175 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      +..|+|++|+..|++++..+|++..+++.+|.+|...|++++|...+.+++..+|+++..+..+++|
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            4677788888888888888888888888888888888888888888888888888777777766654

...

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.23  E-value=5.2e-10  Score=77.33  Aligned_cols=98  Identities=18%  Similarity=0.081  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHH
Q 026145          129 LALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELAPN---YTEAYICQ  204 (243)
Q Consensus       129 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l  204 (243)
                      .++|+.|..+-..|+.++|+.+|++++....... ...++..+|.++..+|++++|+..+++++...|+   +......+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            4688999999999999999999999999765442 3578999999999999999999999999999898   77888889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhc
Q 026145          205 GDVFLAMDQYDAAEKSYSTCLQ  226 (243)
Q Consensus       205 a~~~~~~g~~~~A~~~~~~al~  226 (243)
                      +.++...|++++|+.++-.++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999988876

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.20  E-value=9.8e-11  Score=74.20  Aligned_cols=71  Identities=20%  Similarity=0.380  Sum_probs=50.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          171 CLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       171 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ..+|...++|++|+..+++++.++|+++..++.+|.++..+|++++|...++++++..|+++.+....+.+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l   72 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML   72 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence            34566777777777777777777777777777777777777777777777777777777777666665543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.19  E-value=7e-10  Score=84.83  Aligned_cols=120  Identities=17%  Similarity=0.036  Sum_probs=111.7

Q ss_pred             eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHH
Q 026145           95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLAR  174 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~  174 (243)
                      ......|++..|+..+.++....|       .+...|..+|.+|.+.|++++|...|.+++++.|+++  .+..|+|+.+
T Consensus       108 k~~~~~g~~~~A~~~~rkA~~l~p-------~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p--~~~nNlgms~  178 (257)
T COG5010         108 KNQIRNGNFGEAVSVLRKAARLAP-------TDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEP--SIANNLGMSL  178 (257)
T ss_pred             HHHHHhcchHHHHHHHHHHhccCC-------CChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCc--hhhhhHHHHH
Confidence            344567799999999999999998       8999999999999999999999999999999999998  9999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026145          175 LTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYST  223 (243)
Q Consensus       175 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  223 (243)
                      +-.|+++.|...+.++...-+.+..+..+++.+....|++++|.....+
T Consensus       179 ~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         179 LLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             HHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence            9999999999999999988888999999999999999999999876544

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.18  E-value=2e-10  Score=101.25  Aligned_cols=154  Identities=10%  Similarity=0.040  Sum_probs=129.7

Q ss_pred             CCCCCeEEEecCCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCC
Q 026145           82 CGAGPNLVALPDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFG  161 (243)
Q Consensus        82 c~~~p~~~~~~~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  161 (243)
                      -...|++.......+| ..|++..+..+...++...    ......+..+|.+|..+..+|+|++|-.+|.+++..+|++
T Consensus       266 n~~nP~~l~~LAn~fy-fK~dy~~v~~la~~ai~~t----~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~  340 (1018)
T KOG2002|consen  266 NNENPVALNHLANHFY-FKKDYERVWHLAEHAIKNT----ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN  340 (1018)
T ss_pred             cCCCcHHHHHHHHHHh-hcccHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC
Confidence            3445665444344444 4559999999998887443    2334667789999999999999999999999999999998


Q ss_pred             chHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----CHHHHHHHHHHHhccCCCchhhhhh
Q 026145          162 GIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMD----QYDAAEKSYSTCLQIDPSIRRSKSF  237 (243)
Q Consensus       162 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~  237 (243)
                       ..-.++.+|++|+..|+++.|..+|+++++..|++.+....+|.+|...+    ..+.|...+.++++..|.+.++|..
T Consensus       341 -~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~  419 (1018)
T KOG2002|consen  341 -FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLE  419 (1018)
T ss_pred             -ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHH
Confidence             23678999999999999999999999999999999999999999998886    6788999999999999999999988


Q ss_pred             hhhc
Q 026145          238 KVSS  241 (243)
Q Consensus       238 ~a~i  241 (243)
                      ++++
T Consensus       420 laql  423 (1018)
T KOG2002|consen  420 LAQL  423 (1018)
T ss_pred             HHHH
Confidence            8775

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=1.2e-10  Score=94.05  Aligned_cols=141  Identities=21%  Similarity=0.205  Sum_probs=125.3

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----------h
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----------I  163 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----------~  163 (243)
                      ...+...++++.|..+--.+++.++       .++.+++..|.+++...+.+.|+..|++++.++|++.          .
T Consensus       176 a~cl~~~~~~~~a~~ea~~ilkld~-------~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~  248 (486)
T KOG0550|consen  176 AECLAFLGDYDEAQSEAIDILKLDA-------TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKK  248 (486)
T ss_pred             hhhhhhcccchhHHHHHHHHHhccc-------chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHH
Confidence            3445566789999999888898888       8899999999999999999999999999999999874          1


Q ss_pred             HHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145          164 HVLYKDRCLARLTMGNFSAALEDVREALELAPNY----TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       164 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  239 (243)
                      ...+...|.-.++.|+|..|.+.|..+|.++|++    +..|.+++.+..++|+.++|+...+.++.++|....++..++
T Consensus       249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra  328 (486)
T KOG0550|consen  249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRA  328 (486)
T ss_pred             HHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHH
Confidence            2567788999999999999999999999999976    567999999999999999999999999999999988887766


Q ss_pred             hc
Q 026145          240 SS  241 (243)
Q Consensus       240 ~i  241 (243)
                      ++
T Consensus       329 ~c  330 (486)
T KOG0550|consen  329 NC  330 (486)
T ss_pred             HH
Confidence            54

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.17  E-value=8.4e-10  Score=95.09  Aligned_cols=122  Identities=18%  Similarity=0.226  Sum_probs=103.0

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHh--------cCHHHHHHHHHHhhcc--CCCCchHHHHHhHH
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEK--------ANFSEADGFLSQAIEL--KPFGGIHVLYKDRC  171 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~al~~--~p~~~~~~~~~~la  171 (243)
                      +...|..+|++++..+|       ..+.++-.++.++...        .+...+.....+++.+  +|.++  .++..+|
T Consensus       357 ~~~~A~~lle~Ai~ldP-------~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~--~~~~ala  427 (517)
T PRK10153        357 SLNKASDLLEEILKSEP-------DFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLP--RIYEILA  427 (517)
T ss_pred             HHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCCh--HHHHHHH
Confidence            47799999999999998       7777777777666443        2345666667776664  56655  8899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 026145          172 LARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRR  233 (243)
Q Consensus       172 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  233 (243)
                      ..+...|++++|...+++++.++| ++.+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus       428 ~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        428 VQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            999999999999999999999999 5889999999999999999999999999999999874

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.16  E-value=4.9e-10  Score=88.00  Aligned_cols=133  Identities=20%  Similarity=0.180  Sum_probs=108.8

Q ss_pred             cCCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc---hHHHHH
Q 026145           92 PDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG---IHVLYK  168 (243)
Q Consensus        92 ~~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~  168 (243)
                      ..|.-|...|-++.|.++|..+...+.       .-..++..+..+|....+|++|++.-.+...+.+++.   ++.+|.
T Consensus       112 qL~~Dym~aGl~DRAE~~f~~L~de~e-------fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyC  184 (389)
T COG2956         112 QLGRDYMAAGLLDRAEDIFNQLVDEGE-------FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYC  184 (389)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHhcchh-------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence            345666777788888888887776553       4456777778888888888888888888888777653   567888


Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145          169 DRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI  231 (243)
Q Consensus       169 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  231 (243)
                      .++..+....+.+.|...+.+|++.+|+...+-..+|.++...|+|+.|++.++.+++.||+.
T Consensus       185 ELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y  247 (389)
T COG2956         185 ELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY  247 (389)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH
Confidence            888888888899999999999999999998899999999999999999999999999988875

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.16  E-value=1.4e-10  Score=102.07  Aligned_cols=132  Identities=15%  Similarity=0.090  Sum_probs=120.7

Q ss_pred             CCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCH
Q 026145          101 GTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNF  180 (243)
Q Consensus       101 ~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~  180 (243)
                      +..++|+++|.+++..+|       .+..+-..+|-++...|++.+|+..|.++.+-..+..  .+|.|+|.||..+|+|
T Consensus       626 k~~~KAlq~y~kvL~~dp-------kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~--dv~lNlah~~~e~~qy  696 (1018)
T KOG2002|consen  626 KHQEKALQLYGKVLRNDP-------KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFE--DVWLNLAHCYVEQGQY  696 (1018)
T ss_pred             HHHHHHHHHHHHHHhcCc-------chhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCC--ceeeeHHHHHHHHHHH
Confidence            367899999999999998       8899999999999999999999999999988776655  8999999999999999


Q ss_pred             HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          181 SAALEDVREALELA--PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       181 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ..|++.|+.+++..  .++..++..||.+++..|++.+|.+++.+|+.+.|+++.+..+++-+
T Consensus       697 ~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v  759 (1018)
T KOG2002|consen  697 RLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALV  759 (1018)
T ss_pred             HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence            99999999999865  35688999999999999999999999999999999999988777654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.16  E-value=7.6e-10  Score=99.90  Aligned_cols=131  Identities=14%  Similarity=0.142  Sum_probs=92.2

Q ss_pred             EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc
Q 026145           98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM  177 (243)
Q Consensus        98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~  177 (243)
                      ...|+.++|+.++++++...+       .....+..+|..+...|+|++|++.|+++++.+|+++  .++..++..+...
T Consensus        79 ~~~G~~~~A~~~~eka~~p~n-------~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~--~~l~gLa~~y~~~  149 (822)
T PRK14574         79 GWAGRDQEVIDVYERYQSSMN-------ISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNP--DLISGMIMTQADA  149 (822)
T ss_pred             HHcCCcHHHHHHHHHhccCCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHhhc
Confidence            344677777777777763333       3444555557777777888888888888888888876  7777777778888


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhh
Q 026145          178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFK  238 (243)
Q Consensus       178 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  238 (243)
                      +++++|++.+++++..+|.+... ..++.++...++..+|++.++++++.+|+++++...+
T Consensus       150 ~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~  209 (822)
T PRK14574        150 GRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNH  209 (822)
T ss_pred             CCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            88888888888888777775443 4455555556667668888888888888877765443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.14  E-value=1.8e-10  Score=94.34  Aligned_cols=114  Identities=15%  Similarity=0.144  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG  205 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  205 (243)
                      .++.++.+.|++.+..|++++|.+.|.+++.-+....  ++++++|..+-.+|+.++|+.+|-+.-.+--++.+++++++
T Consensus       488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~--ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qia  565 (840)
T KOG2003|consen  488 YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT--EALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIA  565 (840)
T ss_pred             cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH--HHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            4555666778888889999999999999998887755  99999999999999999999999888777778899999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          206 DVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      .+|..+.+..+|++++.++..+-|++|....-++.+
T Consensus       566 niye~led~aqaie~~~q~~slip~dp~ilskl~dl  601 (840)
T KOG2003|consen  566 NIYELLEDPAQAIELLMQANSLIPNDPAILSKLADL  601 (840)
T ss_pred             HHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence            999999999999999999999999999887666543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.14  E-value=1.3e-09  Score=98.47  Aligned_cols=135  Identities=10%  Similarity=-0.031  Sum_probs=114.0

Q ss_pred             ecCCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhH
Q 026145           91 LPDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDR  170 (243)
Q Consensus        91 ~~~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l  170 (243)
                      +..+......|+++.|.+.|++++...|       ..+.....+..++...|++++|+.++++++  +|.+........+
T Consensus        38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P-------~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llal  108 (822)
T PRK14574         38 YDSLIIRARAGDTAPVLDYLQEESKAGP-------LQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASA  108 (822)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhhCc-------cchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHH
Confidence            3345666788899999999999999887       554333477888888999999999999999  5544312445555


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhh
Q 026145          171 CLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRS  234 (243)
Q Consensus       171 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  234 (243)
                      |..+..+|+|++|++.|+++++.+|+++.++..++.++...++.++|++.++++...+|++...
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~  172 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY  172 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH
Confidence            7899999999999999999999999999999999999999999999999999999999986554

>PRK11906 transcriptional regulator; Provisional

Probab=99.14  E-value=2.1e-09  Score=89.05  Aligned_cols=123  Identities=17%  Similarity=0.143  Sum_probs=109.4

Q ss_pred             CHhHHHHHHHHHh---cCCCCCcchhhHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHhhccCCCCchHHHHHh
Q 026145          102 TPARASEILMVLC---GIKSDHDAAKNLEALALRKRAEAEFEK---------ANFSEADGFLSQAIELKPFGGIHVLYKD  169 (243)
Q Consensus       102 ~~~~a~~~l~~~l---~~~~~~~~~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~~  169 (243)
                      +.+.|..+|.+++   ..+|       ..+.++..++.+++..         .+-.+|.+.-.+|++++|.|+  .++..
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp-------~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da--~a~~~  343 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQT-------LKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG--KILAI  343 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCc-------ccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH--HHHHH
Confidence            4457788899999   7777       7788888888877643         346788999999999999998  99999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 026145          170 RCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRR  233 (243)
Q Consensus       170 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  233 (243)
                      +|.++...++++.|+..|++|+.++|+.+.+|+..|.+..-.|+.++|.+.++++++++|.-..
T Consensus       344 ~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~  407 (458)
T PRK11906        344 MGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK  407 (458)
T ss_pred             HHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence            9999999999999999999999999999999999999999999999999999999999996543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.13  E-value=6.4e-11  Score=93.17  Aligned_cols=140  Identities=15%  Similarity=0.130  Sum_probs=106.5

Q ss_pred             eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc------------
Q 026145           95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG------------  162 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------------  162 (243)
                      ..|...+.|+.|...+...+...|       .+...+...|.++...+++++|+++|+.+++.+|.+.            
T Consensus       264 kvY~ridQP~~AL~~~~~gld~fP-------~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY  336 (478)
T KOG1129|consen  264 KVYQRIDQPERALLVIGEGLDSFP-------FDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFY  336 (478)
T ss_pred             HHHHHhccHHHHHHHHhhhhhcCC-------chhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeecccc
Confidence            456666778888888877777776       6666677777777777777777777777777766552            


Q ss_pred             --------------------hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHH
Q 026145          163 --------------------IHVLYKDRCLARLTMGNFSAALEDVREALELAPN---YTEAYICQGDVFLAMDQYDAAEK  219 (243)
Q Consensus       163 --------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~  219 (243)
                                          ..+.+.|+|.|-+..++++-++..|++++....+   -+++|+++|.+....|++.-|..
T Consensus       337 ~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~r  416 (478)
T KOG1129|consen  337 DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKR  416 (478)
T ss_pred             CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHH
Confidence                                0267778888888888888888888888875432   35788888888888888888888


Q ss_pred             HHHHHhccCCCchhhhhhhhhc
Q 026145          220 SYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       220 ~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      .|+-++..||++.+++.+++-+
T Consensus       417 cfrlaL~~d~~h~ealnNLavL  438 (478)
T KOG1129|consen  417 CFRLALTSDAQHGEALNNLAVL  438 (478)
T ss_pred             HHHHHhccCcchHHHHHhHHHH
Confidence            8888888888888888777643

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.13  E-value=1.6e-09  Score=85.16  Aligned_cols=134  Identities=12%  Similarity=0.105  Sum_probs=120.2

Q ss_pred             eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHH
Q 026145           95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLAR  174 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~  174 (243)
                      ..|....++++|++.-+++.+..  +.......+..+..+|..+....+.+.|+..+.+|++.+|+..  .+-..+|.+.
T Consensus       149 ~IYQ~treW~KAId~A~~L~k~~--~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cv--RAsi~lG~v~  224 (389)
T COG2956         149 NIYQATREWEKAIDVAERLVKLG--GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCV--RASIILGRVE  224 (389)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHcC--CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccce--ehhhhhhHHH
Confidence            45666779999999999888777  3455667889999999999999999999999999999999987  8888899999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 026145          175 LTMGNFSAALEDVREALELAPNY-TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIR  232 (243)
Q Consensus       175 ~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  232 (243)
                      ...|+|+.|++.++.+++.+|.. +.+.-.+..||..+|+.++...++.++.+..+...
T Consensus       225 ~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~  283 (389)
T COG2956         225 LAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD  283 (389)
T ss_pred             HhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence            99999999999999999999986 67888999999999999999999999999887644

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.12  E-value=2e-09  Score=82.24  Aligned_cols=115  Identities=17%  Similarity=0.156  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELAPNY---TEAY  201 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~  201 (243)
                      ..+..++..|..++..|+|.+|+..|++++...|.+. ...+.+.+|.+++..|+|.+|+..+++.++..|++   +.++
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            4577899999999999999999999999999999765 46789999999999999999999999999999986   4689


Q ss_pred             HHHHHHHHHcC-----------CHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          202 ICQGDVFLAMD-----------QYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       202 ~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      +.+|.+++.+.           ...+|+..|+..+...|+++.+.....+
T Consensus        83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~  132 (203)
T PF13525_consen   83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKR  132 (203)
T ss_dssp             HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHH
T ss_pred             HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHH
Confidence            99999877653           3458999999999999998877655443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.12  E-value=2.6e-10  Score=84.88  Aligned_cols=106  Identities=25%  Similarity=0.198  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG  205 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  205 (243)
                      ..+..++.+|..|-..|-++-|.-.|.+++.+.|+-+  .+++.+|..+...|+|+.|.+.|+..++++|.+-.++.++|
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~--~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg  140 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMP--EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  140 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH--HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc
Confidence            6678899999999999999999999999999999955  99999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCchh
Q 026145          206 DVFLAMDQYDAAEKSYSTCLQIDPSIRR  233 (243)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~p~~~~  233 (243)
                      ..++--|++.-|.+.+.+-.+.||++|-
T Consensus       141 i~~YY~gR~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         141 IALYYGGRYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             eeeeecCchHhhHHHHHHHHhcCCCChH
Confidence            9999999999999999999999999874

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=1e-09  Score=88.84  Aligned_cols=134  Identities=19%  Similarity=0.177  Sum_probs=110.0

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCC----C-Ccc---hhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKS----D-HDA---AKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHV  165 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~----~-~~~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  165 (243)
                      |+.|.+.|++..|...|++++..-.    . ..+   ........+.+++.++.+.++|..|+..++++|..+|.|.  .
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~--K  292 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV--K  292 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch--h
Confidence            5567777888999888888653211    0 011   1123445688999999999999999999999999999998  9


Q ss_pred             HHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHhccCC
Q 026145          166 LYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAA-EKSYSTCLQIDP  229 (243)
Q Consensus       166 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p  229 (243)
                      +++.+|.++..+++|+.|+.+|++++++.|+|..+...+..+..+..++.+. .+.|.+.+..-+
T Consensus       293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            9999999999999999999999999999999999999999998887777665 678888877654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.11  E-value=3.3e-09  Score=87.92  Aligned_cols=122  Identities=18%  Similarity=0.174  Sum_probs=107.5

Q ss_pred             EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc
Q 026145           98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM  177 (243)
Q Consensus        98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~  177 (243)
                      ...+.++.|+++++++....|       .   ....++.++...++..+|+...++++...|.+.  ..+...+..+...
T Consensus       180 ~~t~~~~~ai~lle~L~~~~p-------e---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~--~LL~~Qa~fLl~k  247 (395)
T PF09295_consen  180 SLTQRYDEAIELLEKLRERDP-------E---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDS--ELLNLQAEFLLSK  247 (395)
T ss_pred             hhcccHHHHHHHHHHHHhcCC-------c---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhc
Confidence            344589999999999887775       2   455688999999999999999999999999987  9999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145          178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI  231 (243)
Q Consensus       178 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  231 (243)
                      ++++.|+...+++..+.|++...|+.|+.+|..+|++++|+..++.+-...+.+
T Consensus       248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~  301 (395)
T PF09295_consen  248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKD  301 (395)
T ss_pred             CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCcc
Confidence            999999999999999999999999999999999999999998888665544333

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.11  E-value=3.1e-10  Score=70.82  Aligned_cols=67  Identities=18%  Similarity=0.179  Sum_probs=61.3

Q ss_pred             HHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 026145          138 EFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGD  206 (243)
Q Consensus       138 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  206 (243)
                      ++..|+|++|+..|++++..+|++.  .++..+|.++++.|++++|...+++++..+|+++..+..++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNP--EARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSH--HHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            3678999999999999999999988  999999999999999999999999999999998888877765

...

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=99.10  E-value=4.5e-09  Score=72.12  Aligned_cols=104  Identities=26%  Similarity=0.338  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNY----TEAY  201 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~  201 (243)
                      .....+-..|..+...|+.+.|++.|.+++.+-|+.+  .+|+|++..+...|+.++|+..+++++++....    -.++
T Consensus        41 e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~ra--SayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~  118 (175)
T KOG4555|consen   41 KASRELELKAIALAEAGDLDGALELFGQALCLAPERA--SAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAF  118 (175)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccch--HhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHH
Confidence            4445566778888999999999999999999999987  999999999999999999999999999986443    3579


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145          202 ICQGDVFLAMDQYDAAEKSYSTCLQIDPSI  231 (243)
Q Consensus       202 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~  231 (243)
                      .++|.+|..+|+-+.|...|..+.++-...
T Consensus       119 vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  119 VQRGLLYRLLGNDDAARADFEAAAQLGSKF  148 (175)
T ss_pred             HHHHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence            999999999999999999999987765543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.09  E-value=2.7e-09  Score=87.59  Aligned_cols=138  Identities=13%  Similarity=-0.001  Sum_probs=120.8

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      .|..-...|++++|.+.|++++..+.       .-..++++.|.++...|+.++|+.+|-+.-.+--++.  +++..++.
T Consensus       496 kgn~~f~ngd~dka~~~ykeal~nda-------sc~ealfniglt~e~~~~ldeald~f~klh~il~nn~--evl~qian  566 (840)
T KOG2003|consen  496 KGNIAFANGDLDKAAEFYKEALNNDA-------SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNA--EVLVQIAN  566 (840)
T ss_pred             CCceeeecCcHHHHHHHHHHHHcCch-------HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhH--HHHHHHHH
Confidence            45555667799999999999998776       7788999999999999999999999988877766665  89999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145          173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  239 (243)
                      +|-.+.+..+|++++.++..+-|+++.++..+|.+|-+.|+-.+|.+++-...+..|.+.+...+++
T Consensus       567 iye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~  633 (840)
T KOG2003|consen  567 IYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLA  633 (840)
T ss_pred             HHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHH
Confidence            9999999999999999999999999999999999999999999998888888888888877766655

>COG3411 Ferredoxin [Energy production and conversion]

Probab=99.09  E-value=2.6e-10  Score=67.31  Aligned_cols=47  Identities=34%  Similarity=0.556  Sum_probs=44.1

Q ss_pred             cEEEEeeCCCCCCCCCCeEEEecCCeEEEecCCHhHHHHHHHHHhcCC
Q 026145           70 EVAVKSCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMVLCGIK  117 (243)
Q Consensus        70 ~v~v~~~gc~g~c~~~p~~~~~~~g~~~~~~~~~~~a~~~l~~~l~~~  117 (243)
                      ++.+..+||++.|..+|++++||+|.||..+ ++++|.++.++++..+
T Consensus         2 ~i~~t~tgCl~~C~~gPvl~vYpegvWY~~V-~p~~a~rIv~~hl~~G   48 (64)
T COG3411           2 SIRVTRTGCLGVCQDGPVLVVYPEGVWYTRV-DPEDARRIVQSHLLGG   48 (64)
T ss_pred             ceEEeecchhhhhccCCEEEEecCCeeEecc-CHHHHHHHHHHHHhCC
Confidence            5789999999999999999999999999999 9999999999988655

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.09  E-value=6.1e-09  Score=79.54  Aligned_cols=142  Identities=15%  Similarity=0.095  Sum_probs=110.0

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCL  172 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~  172 (243)
                      |..+...|++++|++.|+.+....|    .+.....+++.+|..+++.|+|++|+..|++.+...|+++ ...+++.+|.
T Consensus        12 a~~~~~~g~y~~Ai~~f~~l~~~~P----~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~   87 (203)
T PF13525_consen   12 ALEALQQGDYEEAIKLFEKLIDRYP----NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL   87 (203)
T ss_dssp             HHHHHHCT-HHHHHHHHHHHHHH-T----TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCC----CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence            3334567899999999999987665    2235677889999999999999999999999999999886 4578888999


Q ss_pred             HHHHcC-----------CHHHHHHHHHHHHHhCCCcHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHH
Q 026145          173 ARLTMG-----------NFSAALEDVREALELAPNYTE-----------------AYICQGDVFLAMDQYDAAEKSYSTC  224 (243)
Q Consensus       173 ~~~~~~-----------~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~g~~~~A~~~~~~a  224 (243)
                      +++.+.           ...+|+..|+..++..|++..                 --+..|..|.+.|.|..|+.-++.+
T Consensus        88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v  167 (203)
T PF13525_consen   88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYV  167 (203)
T ss_dssp             HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHH
T ss_pred             HHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            877653           245899999999999998732                 2345788899999999999999999


Q ss_pred             hccCCCchhhhhhhh
Q 026145          225 LQIDPSIRRSKSFKV  239 (243)
Q Consensus       225 l~~~p~~~~~~~~~a  239 (243)
                      ++..|+.+.+...+.
T Consensus       168 ~~~yp~t~~~~~al~  182 (203)
T PF13525_consen  168 IENYPDTPAAEEALA  182 (203)
T ss_dssp             HHHSTTSHHHHHHHH
T ss_pred             HHHCCCCchHHHHHH
Confidence            999999877655443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.09  E-value=9.9e-10  Score=69.54  Aligned_cols=70  Identities=29%  Similarity=0.454  Sum_probs=64.5

Q ss_pred             HHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 026145          135 AEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGD  206 (243)
Q Consensus       135 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  206 (243)
                      ..++...++|++|++.+++++..+|+++  .++..+|.++..+|++.+|+..++++++..|+++.+...++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDP--ELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccc--hhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            4678999999999999999999999988  999999999999999999999999999999999887765543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.08  E-value=3.3e-09  Score=87.93  Aligned_cols=119  Identities=14%  Similarity=0.082  Sum_probs=99.4

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHH
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFS  181 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~  181 (243)
                      ....+.+.+.......|       .....+..+|.++...|++++|+..+++++++.|++.  .++..+|.++...|+++
T Consensus        95 ~~~~~~~~l~~~~~~~~-------~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~--~~~~~la~i~~~~g~~~  165 (355)
T cd05804          95 MRDHVARVLPLWAPENP-------DYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDA--WAVHAVAHVLEMQGRFK  165 (355)
T ss_pred             CchhHHHHHhccCcCCC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc--HHHHHHHHHHHHcCCHH
Confidence            44445555544333333       5566777889999999999999999999999999987  89999999999999999


Q ss_pred             HHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 026145          182 AALEDVREALELAPNYT----EAYICQGDVFLAMDQYDAAEKSYSTCLQIDP  229 (243)
Q Consensus       182 ~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  229 (243)
                      +|+..+++++...|.++    ..+..+|.++...|++++|+..+++++...|
T Consensus       166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            99999999999887433    3566899999999999999999999987766

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.07  E-value=5.8e-09  Score=81.69  Aligned_cols=114  Identities=17%  Similarity=0.176  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHH
Q 026145          127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELAPNY---TEAYI  202 (243)
Q Consensus       127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~  202 (243)
                      .+..++..|..++..|+|++|++.|++++...|..+ ...+.+.+|.++++.++|++|+..+++.++.+|++   +.+++
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            466688899999999999999999999999999876 23456889999999999999999999999999977   46899


Q ss_pred             HHHHHHHHcC---------------C---HHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          203 CQGDVFLAMD---------------Q---YDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       203 ~la~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      .+|.++..++               +   ..+|+..|++.++..|+++-+.....+
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~r  166 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKR  166 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHH
Confidence            9998875554               1   357889999999999998766554443

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=3e-09  Score=80.64  Aligned_cols=108  Identities=23%  Similarity=0.302  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc--------CCCCc--------hHHHHHhHHHHHHHcCCHHHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIEL--------KPFGG--------IHVLYKDRCLARLTMGNFSAALEDVRE  189 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~  189 (243)
                      .....+...|+-+++.|+|.+|...|..|+..        .|.++        +...+.|+++|++..++|-++++....
T Consensus       176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se  255 (329)
T KOG0545|consen  176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE  255 (329)
T ss_pred             hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence            44567889999999999999999999999743        34432        235788999999999999999999999


Q ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 026145          190 ALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRR  233 (243)
Q Consensus       190 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  233 (243)
                      +|..+|.+..+++.+|.++....+..+|.+.|+++++++|.-..
T Consensus       256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence            99999999999999999999999999999999999999997543

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=6.3e-10  Score=83.88  Aligned_cols=100  Identities=27%  Similarity=0.390  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG  205 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  205 (243)
                      ..+..+...|+.++....|..|+..|.++|.++|..+  ..|.+++.|++++++|+.+.....+++++.|+...+++.+|
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~--~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg   85 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVA--SYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLG   85 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcc--hhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHH
Confidence            4455677789999999999999999999999999976  89999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHhcc
Q 026145          206 DVFLAMDQYDAAEKSYSTCLQI  227 (243)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~  227 (243)
                      .++.....|++|+..++++..+
T Consensus        86 ~~~l~s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   86 QWLLQSKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             HHHHhhccccHHHHHHHHHHHH
Confidence            9999999999999999999654

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.06  E-value=1.3e-09  Score=92.68  Aligned_cols=135  Identities=19%  Similarity=0.273  Sum_probs=112.3

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCC-CCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCC-----Cc-hHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKS-DHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPF-----GG-IHVL  166 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----~~-~~~~  166 (243)
                      |..|...+++.+|+.+|++++.... -.....+..+..+.++|..|.+.|++++|..++++|+++...     .+ ....
T Consensus       248 a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~  327 (508)
T KOG1840|consen  248 ALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ  327 (508)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence            5677888899999999998873221 023445588899999999999999999999999999987422     11 4678


Q ss_pred             HHhHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145          167 YKDRCLARLTMGNFSAALEDVREALELA--------PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID  228 (243)
Q Consensus       167 ~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  228 (243)
                      +.+++.++..++++++|..++++++++.        |.-+..+.++|.+|..+|++++|.+.+++++.+.
T Consensus       328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~  397 (508)
T KOG1840|consen  328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL  397 (508)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            8999999999999999999999999863        2346789999999999999999999999999875

>KOG3196 consensus NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit [Energy production and conversion]

Probab=99.05  E-value=3.7e-10  Score=81.53  Aligned_cols=85  Identities=27%  Similarity=0.348  Sum_probs=73.0

Q ss_pred             cccccccccccCCCcEEEEccCCccCccCHHHHHHHHHh-cCC--------CcEEEEeeCCCCCCCCCCeEEEecCCeEE
Q 026145           27 FCFPLPRARINAELKELRVCTNRTCRRQGSMQILETLSS-LAP--------PEVAVKSCGCLGRCGAGPNLVALPDGVVV   97 (243)
Q Consensus        27 ~~~~~~~~~~~~~~~~i~vC~~~~c~~~G~~~~~~~l~~-~g~--------~~v~v~~~gc~g~c~~~p~~~~~~~g~~~   97 (243)
                      ..|+.|..|.+.+++||.||+.+.|..+|++++.+..++ +|+        ..+++..++|+|.|-++|.+.+  ...+|
T Consensus       100 atfYtmf~r~p~gKy~v~VC~ttpC~lrg~d~i~ea~~k~lgi~~Gett~d~~Ftl~e~eClGaCvnaPmi~I--ND~yy  177 (233)
T KOG3196|consen  100 ATFYTMFFRKPVGKYHVQVCTTTPCMLRGSDDILEACKKQLGIKVGETTKDGLFTLEEVECLGACVNAPMIAI--NDDYY  177 (233)
T ss_pred             HHHHHHhhccCCCCceEEEecCcHHhhhccHHHHHHHHHHhCccccccccccceeeecchhhhhhccCceeee--cchhh
Confidence            346777788888999999999999999999999999998 444        2588999999999999999976  56777


Q ss_pred             EecCCHhHHHHHHHHHh
Q 026145           98 GHCGTPARASEILMVLC  114 (243)
Q Consensus        98 ~~~~~~~~a~~~l~~~l  114 (243)
                      ... +.++..+|++.+-
T Consensus       178 edl-t~k~l~eIle~L~  193 (233)
T KOG3196|consen  178 EDL-TPKKLVEILEDLK  193 (233)
T ss_pred             ccC-CHHHHHHHHHHHh
Confidence            777 9999999998765

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=3.3e-09  Score=83.67  Aligned_cols=111  Identities=25%  Similarity=0.398  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc--hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG--IHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYIC  203 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  203 (243)
                      ..+..+..-|+.|++..+|..|+..|.+.|...-.++  .+..|.|+|.+.+.+|+|..|+.+..+++.++|.+..++++
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R  158 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR  158 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence            5788899999999999999999999999999865544  46789999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhccCCCchhhhh
Q 026145          204 QGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKS  236 (243)
Q Consensus       204 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  236 (243)
                      -|.|++.+.++++|..+....+.++.+...+..
T Consensus       159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~  191 (390)
T KOG0551|consen  159 GAKCLLELERFAEAVNWCEEGLQIDDEAKKAIE  191 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            999999999999999999998888766554433

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.05  E-value=6.8e-10  Score=72.38  Aligned_cols=83  Identities=18%  Similarity=0.241  Sum_probs=69.6

Q ss_pred             cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCC
Q 026145          100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN  179 (243)
Q Consensus       100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~  179 (243)
                      .|++++|+.++++++...| .   . .+...++.+|.++++.|+|++|+..+++ ...+|.+.  ...+.+|.+++.+|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~-~---~-~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~--~~~~l~a~~~~~l~~   73 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDP-T---N-PNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNP--DIHYLLARCLLKLGK   73 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHC-G---T-HHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHH--HHHHHHHHHHHHTT-
T ss_pred             CccHHHHHHHHHHHHHHCC-C---C-hhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCH--HHHHHHHHHHHHhCC
Confidence            3689999999999997775 1   1 1566788899999999999999999999 88888765  777788999999999


Q ss_pred             HHHHHHHHHHH
Q 026145          180 FSAALEDVREA  190 (243)
Q Consensus       180 ~~~A~~~~~~a  190 (243)
                      |++|+..++++
T Consensus        74 y~eAi~~l~~~   84 (84)
T PF12895_consen   74 YEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999999875

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.04  E-value=3.8e-09  Score=87.54  Aligned_cols=129  Identities=17%  Similarity=0.066  Sum_probs=99.3

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhc----CHHHHHHHHHHhhccCCCCchHHHHHh
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKA----NFSEADGFLSQAIELKPFGGIHVLYKD  169 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~~~  169 (243)
                      +..+...|+++++.+.+++++...|       .+...+.. +..++..+    ....+...+.......|...  .++..
T Consensus        50 a~~~~~~g~~~~A~~~~~~~l~~~P-------~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~  119 (355)
T cd05804          50 ALSAWIAGDLPKALALLEQLLDDYP-------RDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYW--YLLGM  119 (355)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCC-------CcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcH--HHHHH
Confidence            3344566799999999999988877       44444443 44444444    44444444444334555544  66778


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 026145          170 RCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIR  232 (243)
Q Consensus       170 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  232 (243)
                      +|.++...|++++|+..++++++++|+++.++..+|.++...|++++|+.++++++...|.++
T Consensus       120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~  182 (355)
T cd05804         120 LAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS  182 (355)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc
Confidence            899999999999999999999999999999999999999999999999999999999987544

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.03  E-value=2.8e-08  Score=77.84  Aligned_cols=141  Identities=16%  Similarity=0.101  Sum_probs=113.3

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRC  171 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la  171 (243)
                      .+..+...|++++|++.|+.++...|.    +.....+.+.+|.++++.++|++|+..|++.++.+|+++ ...+++.+|
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~----s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g  113 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRYPF----GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG  113 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence            445556678999999999999987762    124455678999999999999999999999999999886 567888899


Q ss_pred             HHHHHcC---------------C---HHHHHHHHHHHHHhCCCcHH-----------------HHHHHHHHHHHcCCHHH
Q 026145          172 LARLTMG---------------N---FSAALEDVREALELAPNYTE-----------------AYICQGDVFLAMDQYDA  216 (243)
Q Consensus       172 ~~~~~~~---------------~---~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~g~~~~  216 (243)
                      .++..++               +   -.+|+..+++.++..|++..                 --+..|..|.+.|.|..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~A  193 (243)
T PRK10866        114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVA  193 (243)
T ss_pred             HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence            8875554               1   25788999999999998632                 13356778999999999


Q ss_pred             HHHHHHHHhccCCCchhhhhh
Q 026145          217 AEKSYSTCLQIDPSIRRSKSF  237 (243)
Q Consensus       217 A~~~~~~al~~~p~~~~~~~~  237 (243)
                      |+.-++.+++..|+.+.....
T Consensus       194 A~~r~~~v~~~Yp~t~~~~ea  214 (243)
T PRK10866        194 VVNRVEQMLRDYPDTQATRDA  214 (243)
T ss_pred             HHHHHHHHHHHCCCCchHHHH
Confidence            999999999999987765543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.03  E-value=7.2e-09  Score=90.96  Aligned_cols=111  Identities=22%  Similarity=0.196  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG  205 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  205 (243)
                      .....++..|+.++-.|++++|.+.+.++|..+|.++  .+|+.+|.+|-.+|+.++++..+-.|-.++|.+++.|..++
T Consensus       137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~--~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~la  214 (895)
T KOG2076|consen  137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNP--IAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLA  214 (895)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccch--hhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence            4577888899999999999999999999999999987  99999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCchhhhhhh
Q 026145          206 DVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFK  238 (243)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  238 (243)
                      .....+|.+++|.-+|.+|++.+|.+......+
T Consensus       215 dls~~~~~i~qA~~cy~rAI~~~p~n~~~~~er  247 (895)
T KOG2076|consen  215 DLSEQLGNINQARYCYSRAIQANPSNWELIYER  247 (895)
T ss_pred             HHHHhcccHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            999999999999999999999999986665443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.01  E-value=7.2e-09  Score=71.82  Aligned_cols=104  Identities=13%  Similarity=0.101  Sum_probs=87.2

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCL  172 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~  172 (243)
                      +..+...|++++|.+.+..++...|+    ......+++.+|.++...|++++|+..|++++..+|++. ...++..+|.
T Consensus         9 ~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         9 ALLVLKAGDYADAIQAFQAFLKKYPK----STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCC----ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence            34455677999999999999876651    113366889999999999999999999999999988853 2378999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 026145          173 ARLTMGNFSAALEDVREALELAPNYTEAY  201 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~  201 (243)
                      ++..++++++|+..+++++...|++..+.
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  113 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             HHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence            99999999999999999999999886543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.01  E-value=2.1e-09  Score=88.97  Aligned_cols=74  Identities=19%  Similarity=0.104  Sum_probs=66.0

Q ss_pred             cchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchH-HHHHhHHHHHHHcCCHHHHHHHHHHHHHhC
Q 026145          121 DAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIH-VLYKDRCLARLTMGNFSAALEDVREALELA  194 (243)
Q Consensus       121 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~  194 (243)
                      ....+..+.+++++|..++..|+|++|+..|+++++++|++..+ .+|+|+|.+|..+|++++|+.++++++++.
T Consensus        68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            34566889999999999999999999999999999999997511 349999999999999999999999999973

>TIGR00540 hemY_coli hemY protein

Probab=99.00  E-value=2.1e-08  Score=84.83  Aligned_cols=130  Identities=19%  Similarity=0.175  Sum_probs=111.9

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |......|+++.|.+.+.+..+..|       .....+...|......|+++.|..++.++.+..|++. ..+...++.+
T Consensus        91 glla~~~g~~~~A~~~l~~~~~~~~-------~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~-l~~~~~~a~l  162 (409)
T TIGR00540        91 ALLKLAEGDYAKAEKLIAKNADHAA-------EPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN-ILVEIARTRI  162 (409)
T ss_pred             HHHHHhCCCHHHHHHHHHHHhhcCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc-hHHHHHHHHH
Confidence            4444567799999999998887766       5566677889999999999999999999999988863 1244556999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI  231 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  231 (243)
                      +...|++++|...+++.++..|+++.++..++.++...|++++|.+.+.+..+..+.+
T Consensus       163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~  220 (409)
T TIGR00540       163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD  220 (409)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999999999999999999999999999774433

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=6.5e-09  Score=87.16  Aligned_cols=116  Identities=21%  Similarity=0.165  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG  205 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  205 (243)
                      ..+..|+..|..|...+++++|.++|.++..++|..+  .+|...|..+.-.+.-++|+..|..|-++.|......+.+|
T Consensus       310 ~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fg--paWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlg  387 (611)
T KOG1173|consen  310 SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFG--PAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLG  387 (611)
T ss_pred             CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcccc--HHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHH
Confidence            5666788889999999999999999999999999976  99999999999999999999999999999999888889999


Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhccC
Q 026145          206 DVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSSTY  243 (243)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i~~  243 (243)
                      .-|..+++++-|..+|.+|+.+.|++|-+....+-|+|
T Consensus       388 mey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay  425 (611)
T KOG1173|consen  388 MEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAY  425 (611)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheee
Confidence            99999999999999999999999999988887776654

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.98  E-value=6.7e-10  Score=91.60  Aligned_cols=110  Identities=26%  Similarity=0.439  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 026145          129 LALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVF  208 (243)
Q Consensus       129 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  208 (243)
                      ..+-..|+.++..+.|+.|+..|.+||+++|+..  ..+.+++.++++.++|..|+.++.++++.+|....+|+..|.+.
T Consensus         5 ~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca--~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~   82 (476)
T KOG0376|consen    5 EELKNEANEALKDKVFDVAVDLYSKAIELDPNCA--IYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV   82 (476)
T ss_pred             hhhhhHHhhhcccchHHHHHHHHHHHHhcCCcce--eeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence            3455678888999999999999999999999987  88999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          209 LAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       209 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      .+++++.+|...|++...+.|+++.+.+....
T Consensus        83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~E  114 (476)
T KOG0376|consen   83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDE  114 (476)
T ss_pred             HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHH
Confidence            99999999999999999999999998876544

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.98  E-value=1.3e-08  Score=86.83  Aligned_cols=150  Identities=16%  Similarity=0.151  Sum_probs=128.0

Q ss_pred             CCCCCCeEEEecCCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCC
Q 026145           81 RCGAGPNLVALPDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPF  160 (243)
Q Consensus        81 ~c~~~p~~~~~~~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  160 (243)
                      .|...++..+. ....+...|+...|..++..++...|       +.-..|+..-...+...+++.|..++.++....|.
T Consensus       579 ~~pkae~lwlM-~ake~w~agdv~~ar~il~~af~~~p-------nseeiwlaavKle~en~e~eraR~llakar~~sgT  650 (913)
T KOG0495|consen  579 QCPKAEILWLM-YAKEKWKAGDVPAARVILDQAFEANP-------NSEEIWLAAVKLEFENDELERARDLLAKARSISGT  650 (913)
T ss_pred             hCCcchhHHHH-HHHHHHhcCCcHHHHHHHHHHHHhCC-------CcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc
Confidence            45555554321 12233445799999999999998888       77788888888888899999999999999998886


Q ss_pred             CchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          161 GGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       161 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      .   .+|+..+.....+++.++|+..++++++..|+.+..|..+|+++..+++.+.|.+.|...++.-|..+-+|..+++
T Consensus       651 e---Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLak  727 (913)
T KOG0495|consen  651 E---RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAK  727 (913)
T ss_pred             c---hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHH
Confidence            5   6888889999999999999999999999999999999999999999999999999999999999999999988876


Q ss_pred             c
Q 026145          241 S  241 (243)
Q Consensus       241 i  241 (243)
                      +
T Consensus       728 l  728 (913)
T KOG0495|consen  728 L  728 (913)
T ss_pred             H
Confidence            5

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.95  E-value=5.2e-09  Score=77.51  Aligned_cols=104  Identities=14%  Similarity=0.152  Sum_probs=86.8

Q ss_pred             HHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCH
Q 026145          138 EFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNY---TEAYICQGDVFLAMDQY  214 (243)
Q Consensus       138 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~  214 (243)
                      ++-..+|..+...+...++..+.+.....++++|.++..+|++++|+..+++++.+.|+.   +.++.++|.++...|++
T Consensus         9 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~   88 (168)
T CHL00033          9 NFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH   88 (168)
T ss_pred             cccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH
Confidence            344456777777777766666655345788999999999999999999999999987763   45899999999999999


Q ss_pred             HHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          215 DAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       215 ~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ++|+..+.+++.++|.+...+..++.+
T Consensus        89 ~eA~~~~~~Al~~~~~~~~~~~~la~i  115 (168)
T CHL00033         89 TKALEYYFQALERNPFLPQALNNMAVI  115 (168)
T ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence            999999999999999998887766654

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.95  E-value=1.6e-09  Score=93.13  Aligned_cols=111  Identities=20%  Similarity=0.211  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 026145          128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDV  207 (243)
Q Consensus       128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  207 (243)
                      +.+.+.+|......++|.++...++..++++|-..  ..|+++|.+..++++++.|..+|..++.++|++..+|.+++.+
T Consensus       485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~--~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~a  562 (777)
T KOG1128|consen  485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQL--GTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTA  562 (777)
T ss_pred             HHHHHhhccccccchhHHHHHHHHHHHhhcCccch--hHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHH
Confidence            33444555555667899999999999999999876  8999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          208 FLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       208 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      |...++-.+|...+++|++.+-++...|.++--
T Consensus       563 yi~~~~k~ra~~~l~EAlKcn~~~w~iWENyml  595 (777)
T KOG1128|consen  563 YIRLKKKKRAFRKLKEALKCNYQHWQIWENYML  595 (777)
T ss_pred             HHHHhhhHHHHHHHHHHhhcCCCCCeeeechhh
Confidence            999999999999999999999888888776543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.94  E-value=4.3e-08  Score=82.63  Aligned_cols=132  Identities=14%  Similarity=0.107  Sum_probs=104.8

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |......|+++.|.+.+.......+       .....+...+......|+++.|..++.++.+.+|++. .......+..
T Consensus        91 gl~a~~eGd~~~A~k~l~~~~~~~~-------~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~-~~~~l~~a~l  162 (398)
T PRK10747         91 ALLKLAEGDYQQVEKLMTRNADHAE-------QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ-LPVEITRVRI  162 (398)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhccc-------chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch-HHHHHHHHHH
Confidence            3334446799999988876554432       2233344456666999999999999999999999873 1222345899


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRR  233 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  233 (243)
                      +...|++++|+..++++.+.+|+++.++..++.+|...|++++|.+.+.+..+..+.++.
T Consensus       163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~  222 (398)
T PRK10747        163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE  222 (398)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH
Confidence            999999999999999999999999999999999999999999999888888877665443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.94  E-value=2.1e-08  Score=79.18  Aligned_cols=98  Identities=10%  Similarity=0.023  Sum_probs=85.7

Q ss_pred             ecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHc
Q 026145           99 HCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTM  177 (243)
Q Consensus        99 ~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~  177 (243)
                      ..|++++|+..|+..+...|+    +...+.+++.+|..++..|++++|+..|.+++..+|+++ ..++++.+|.++..+
T Consensus       155 ~~~~y~~Ai~af~~fl~~yP~----s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~  230 (263)
T PRK10803        155 DKSRQDDAIVAFQNFVKKYPD----STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDK  230 (263)
T ss_pred             hcCCHHHHHHHHHHHHHHCcC----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHc
Confidence            346999999999999988862    123467899999999999999999999999999998864 458899999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHH
Q 026145          178 GNFSAALEDVREALELAPNYTEA  200 (243)
Q Consensus       178 ~~~~~A~~~~~~al~~~p~~~~~  200 (243)
                      |++++|...|+++++..|++..+
T Consensus       231 g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        231 GDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             CCHHHHHHHHHHHHHHCcCCHHH
Confidence            99999999999999999988654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.94  E-value=8.6e-09  Score=76.64  Aligned_cols=99  Identities=24%  Similarity=0.230  Sum_probs=82.5

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      .|..+...|++++|...+++++...+++    ...+..+..+|.++...|++++|+..|.+++...|++.  .++..+|.
T Consensus        41 lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~  114 (172)
T PRK02603         41 DGMSAQADGEYAEALENYEEALKLEEDP----NDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP--SALNNIAV  114 (172)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhhcc----chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--HHHHHHHH
Confidence            4556677789999999999998765411    12467899999999999999999999999999999976  88999999


Q ss_pred             HHHHcCC--------------HHHHHHHHHHHHHhCCCc
Q 026145          173 ARLTMGN--------------FSAALEDVREALELAPNY  197 (243)
Q Consensus       173 ~~~~~~~--------------~~~A~~~~~~al~~~p~~  197 (243)
                      ++...|+              +++|++.+++++..+|++
T Consensus       115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            9999887              577777777787777765

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.93  E-value=2.3e-08  Score=80.26  Aligned_cols=134  Identities=19%  Similarity=0.161  Sum_probs=100.9

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhc--CHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKA--NFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      .+...++++.|.+.++.....+.       +........+++.+..|  ++.+|.-.|++.-...+.++  ..++.++.+
T Consensus       140 i~L~~~R~dlA~k~l~~~~~~~e-------D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~--~~lng~A~~  210 (290)
T PF04733_consen  140 ILLKMNRPDLAEKELKNMQQIDE-------DSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTP--KLLNGLAVC  210 (290)
T ss_dssp             HHHHTT-HHHHHHHHHHHHCCSC-------CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SH--HHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCC-------cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCH--HHHHHHHHH
Confidence            44567788999999888776654       33333444444544444  68999999999887777766  888899999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHhccCCCchhhhhhh
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQY-DAAEKSYSTCLQIDPSIRRSKSFK  238 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~  238 (243)
                      ++.+|+|++|.+.+++++..+|++++++.++..+...+|+. +.+.+.+++....+|+++-+..+.
T Consensus       211 ~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~  276 (290)
T PF04733_consen  211 HLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLA  276 (290)
T ss_dssp             HHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHH
Confidence            99999999999999999999999999999999999999988 667778888888899888766544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.93  E-value=1.6e-08  Score=66.23  Aligned_cols=91  Identities=29%  Similarity=0.283  Sum_probs=81.9

Q ss_pred             EEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHH
Q 026145           97 VGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLT  176 (243)
Q Consensus        97 ~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~  176 (243)
                      +...|++++|...++..+...|       .....+..+|.++...+++++|+..+++++...|.+.  .++..+|.++..
T Consensus        10 ~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~   80 (100)
T cd00189          10 YYKLGDYDEALEYYEKALELDP-------DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA--KAYYNLGLAYYK   80 (100)
T ss_pred             HHHHhcHHHHHHHHHHHHhcCC-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch--hHHHHHHHHHHH
Confidence            3446789999999999998876       5557889999999999999999999999999999976  899999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCC
Q 026145          177 MGNFSAALEDVREALELAPN  196 (243)
Q Consensus       177 ~~~~~~A~~~~~~al~~~p~  196 (243)
                      .|++++|...++++++.+|.
T Consensus        81 ~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          81 LGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHhHHHHHHHHHHHHccCCC
Confidence            99999999999999988773

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.91  E-value=2.4e-08  Score=89.89  Aligned_cols=112  Identities=6%  Similarity=-0.058  Sum_probs=100.4

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------
Q 026145          125 NLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYT------  198 (243)
Q Consensus       125 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------  198 (243)
                      +.+..+|..+...+...+++++|+..++.+++..|+..  .+|+.+|.++++.++++++...  .++...+.+.      
T Consensus        28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i--~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve  103 (906)
T PRK14720         28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSI--SALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE  103 (906)
T ss_pred             cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcce--ehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence            37888999999999999999999999999999999987  9999999999999998887766  6666665555      


Q ss_pred             -------------HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          199 -------------EAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       199 -------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                                   .+++.+|.||.++|++++|...|+++++++|+++.+.++++-
T Consensus       104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY  158 (906)
T PRK14720        104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLAT  158 (906)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence                         899999999999999999999999999999999999888764

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.89  E-value=1e-08  Score=88.31  Aligned_cols=122  Identities=15%  Similarity=0.101  Sum_probs=115.5

Q ss_pred             ecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcC
Q 026145           99 HCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMG  178 (243)
Q Consensus        99 ~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~  178 (243)
                      ..++++++.+.++..+..+|       .....|+.+|.+..+.++++.|...|...+.++|++.  .+|+|++..|..++
T Consensus       497 ~~~~fs~~~~hle~sl~~np-------lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~--eaWnNls~ayi~~~  567 (777)
T KOG1128|consen  497 SNKDFSEADKHLERSLEINP-------LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNA--EAWNNLSTAYIRLK  567 (777)
T ss_pred             cchhHHHHHHHHHHHhhcCc-------cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCch--hhhhhhhHHHHHHh
Confidence            34599999999999999998       8899999999999999999999999999999999988  99999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 026145          179 NFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP  229 (243)
Q Consensus       179 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  229 (243)
                      +-.+|...++++++.+-.++..|.|.-.+....|.+++|+..+.+.+.+..
T Consensus       568 ~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~  618 (777)
T KOG1128|consen  568 KKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK  618 (777)
T ss_pred             hhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence            999999999999999988999999999999999999999999999987654

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.89  E-value=1.6e-08  Score=73.57  Aligned_cols=93  Identities=19%  Similarity=0.315  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 026145          144 FSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN----------FSAALEDVREALELAPNYTEAYICQGDVFLAMDQ  213 (243)
Q Consensus       144 ~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  213 (243)
                      |+.|.+.++.....+|.+.  +.+++.|.+++.+.+          +++|+.-|++||.++|+..++++.+|.+|..++.
T Consensus         7 FE~ark~aea~y~~nP~Da--dnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~   84 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDA--DNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF   84 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-H--HHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhH--HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence            6788899999999999987  999999988887644          4678888999999999999999999999987664


Q ss_pred             -----------HHHHHHHHHHHhccCCCchhhhhhh
Q 026145          214 -----------YDAAEKSYSTCLQIDPSIRRSKSFK  238 (243)
Q Consensus       214 -----------~~~A~~~~~~al~~~p~~~~~~~~~  238 (243)
                                 |++|.++|++|...+|++...+..+
T Consensus        85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL  120 (186)
T PF06552_consen   85 LTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL  120 (186)
T ss_dssp             H---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred             hcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence                       7889999999999999987665443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK15331 chaperone protein SicA; Provisional

Probab=98.87  E-value=4.6e-08  Score=70.45  Aligned_cols=99  Identities=14%  Similarity=-0.040  Sum_probs=87.5

Q ss_pred             ecCCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhH
Q 026145           91 LPDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDR  170 (243)
Q Consensus        91 ~~~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l  170 (243)
                      |..+.-+...|++++|..+|+-+...++       .+...|+.+|.++..+++|++|+..|..+..++++++  ...+..
T Consensus        41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~-------~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp--~p~f~a  111 (165)
T PRK15331         41 YAHAYEFYNQGRLDEAETFFRFLCIYDF-------YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY--RPVFFT  111 (165)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCc-------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC--CccchH
Confidence            3345555678899999999999888887       7788899999999999999999999999999999988  889999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 026145          171 CLARLTMGNFSAALEDVREALELAPNYTE  199 (243)
Q Consensus       171 a~~~~~~~~~~~A~~~~~~al~~~p~~~~  199 (243)
                      |.|++.+|+.+.|...|+.++. .|.+..
T Consensus       112 gqC~l~l~~~~~A~~~f~~a~~-~~~~~~  139 (165)
T PRK15331        112 GQCQLLMRKAAKARQCFELVNE-RTEDES  139 (165)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHh-CcchHH
Confidence            9999999999999999999998 565443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.87  E-value=3e-08  Score=73.20  Aligned_cols=114  Identities=22%  Similarity=0.156  Sum_probs=96.3

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      .|.-++..|+++.|..-|..++...| + .........+.+.|.++++.+.++.|+..+.++|+++|.+.  .++..+|.
T Consensus       101 EGN~~F~ngdyeeA~skY~~Ale~cp-~-~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~--kAl~RRAe  176 (271)
T KOG4234|consen  101 EGNELFKNGDYEEANSKYQEALESCP-S-TSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE--KALERRAE  176 (271)
T ss_pred             HHHHhhhcccHHHHHHHHHHHHHhCc-c-ccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH--HHHHHHHH
Confidence            46667778899999999999998886 2 22344555788899999999999999999999999999976  89999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 026145          173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLA  210 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  210 (243)
                      +|-++..|++|+++|.++++.+|....+.-....+--.
T Consensus       177 ayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~  214 (271)
T KOG4234|consen  177 AYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPK  214 (271)
T ss_pred             HHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHH
Confidence            99999999999999999999999887766655544333

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.86  E-value=1.8e-08  Score=83.51  Aligned_cols=69  Identities=23%  Similarity=0.177  Sum_probs=65.7

Q ss_pred             cCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145          157 LKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEA---YICQGDVFLAMDQYDAAEKSYSTCLQI  227 (243)
Q Consensus       157 ~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~  227 (243)
                      .+|+++  .+++++|.+|+.+|+|++|+..|+++++++|++..+   |+++|.+|..+|++++|++.+++++++
T Consensus        70 ~dP~~a--~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTA--EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            578876  999999999999999999999999999999999854   999999999999999999999999997

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.86  E-value=9.9e-09  Score=65.80  Aligned_cols=62  Identities=18%  Similarity=0.370  Sum_probs=30.2

Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHHHHHhC---C----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145          165 VLYKDRCLARLTMGNFSAALEDVREALELA---P----NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ  226 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  226 (243)
                      .++.++|.+|..+|+|++|+.+|++++.+.   +    ....++.++|.++..+|++++|+++++++++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            445555555555555555555555555331   1    1133455555555555555555555555544

...

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.86  E-value=2.4e-08  Score=85.10  Aligned_cols=135  Identities=17%  Similarity=0.174  Sum_probs=108.2

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCC-CCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccC-----CCCc-hHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKS-DHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELK-----PFGG-IHVL  166 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~~~-~~~~  166 (243)
                      +..|...|+++.|...++.++..-. -........+..+..+|..|...++|.+|+..|++|+.+.     ++++ .+.+
T Consensus       206 a~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~  285 (508)
T KOG1840|consen  206 AEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAAT  285 (508)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            4556778899999999998885500 0112223566666679999999999999999999999873     2332 4688


Q ss_pred             HHhHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145          167 YKDRCLARLTMGNFSAALEDVREALELA--------PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID  228 (243)
Q Consensus       167 ~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  228 (243)
                      +.++|.+|...|+|++|..++++|+++.        |.-+..+.+++.++..++++++|+..+++++++.
T Consensus       286 l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~  355 (508)
T KOG1840|consen  286 LNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY  355 (508)
T ss_pred             HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            9999999999999999999999999874        2234578889999999999999999999999874

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.82  E-value=1.1e-07  Score=80.22  Aligned_cols=122  Identities=15%  Similarity=0.133  Sum_probs=93.5

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      +..+...|+.+.|.+++++.++..+        +.......+.  ...++++++++..++.++.+|+++  ..+..+|.+
T Consensus       270 A~~l~~~g~~~~A~~~L~~~l~~~~--------~~~l~~l~~~--l~~~~~~~al~~~e~~lk~~P~~~--~l~l~lgrl  337 (398)
T PRK10747        270 AEHLIECDDHDTAQQIILDGLKRQY--------DERLVLLIPR--LKTNNPEQLEKVLRQQIKQHGDTP--LLWSTLGQL  337 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCC--------CHHHHHHHhh--ccCCChHHHHHHHHHHHhhCCCCH--HHHHHHHHH
Confidence            3445667788888888888887543        1122222222  244888889999999999999887  888888999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID  228 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  228 (243)
                      +...++|++|.+.|+++++..|++. .+..++.++.++|+.++|.+.|++++.+.
T Consensus       338 ~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        338 LMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            9999999999999999998888754 46678889999999999999999887754

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=5.8e-08  Score=76.15  Aligned_cols=98  Identities=19%  Similarity=0.162  Sum_probs=87.7

Q ss_pred             CHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHH
Q 026145          143 NFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMD---QYDAAEK  219 (243)
Q Consensus       143 ~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~  219 (243)
                      +.+..+.-.+..+..+|+|.  +-|..+|.+|+.+++++.|...|.+++++.|++++.+..+|.++..+.   .-.++..
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~--egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~  214 (287)
T COG4235         137 EMEALIARLETHLQQNPGDA--EGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA  214 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            45666777888899999998  999999999999999999999999999999999999999999887654   3567899


Q ss_pred             HHHHHhccCCCchhhhhhhhhcc
Q 026145          220 SYSTCLQIDPSIRRSKSFKVSST  242 (243)
Q Consensus       220 ~~~~al~~~p~~~~~~~~~a~i~  242 (243)
                      .+++++.+||++..+..+++..+
T Consensus       215 ll~~al~~D~~~iral~lLA~~a  237 (287)
T COG4235         215 LLRQALALDPANIRALSLLAFAA  237 (287)
T ss_pred             HHHHHHhcCCccHHHHHHHHHHH
Confidence            99999999999999998887654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.81  E-value=2.8e-08  Score=63.66  Aligned_cols=69  Identities=19%  Similarity=0.186  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccC---C-CCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhC
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELK---P-FGG-IHVLYKDRCLARLTMGNFSAALEDVREALELA  194 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p-~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  194 (243)
                      ..+.++..+|.++...|+|++|+.+|++++++.   + +++ +..++.++|.++..+|++++|++.+++++++.
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            678899999999999999999999999999762   2 222 46889999999999999999999999999763

...

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.81  E-value=6.5e-08  Score=87.24  Aligned_cols=123  Identities=7%  Similarity=-0.086  Sum_probs=105.4

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-------------
Q 026145           96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-------------  162 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------------  162 (243)
                      .|...++++++.++.+.++...|       .....++.+|.++++.+++.+|...  .++...+.+.             
T Consensus        40 ~~~~~~~~deai~i~~~~l~~~P-------~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~  110 (906)
T PRK14720         40 AYKSENLTDEAKDICEEHLKEHK-------KSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKIL  110 (906)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhCC-------cceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHH
Confidence            34456699999999999999998       8889999999999988888777665  5555544331             


Q ss_pred             ----hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145          163 ----IHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID  228 (243)
Q Consensus       163 ----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  228 (243)
                          ...+++.+|.||-++|++++|...|+++++.+|+++.++.++|..|... +.++|+.++.+|+...
T Consensus       111 ~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~  179 (906)
T PRK14720        111 LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF  179 (906)
T ss_pred             hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence                0168999999999999999999999999999999999999999999999 9999999999998753

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.78  E-value=4e-07  Score=78.41  Aligned_cols=58  Identities=22%  Similarity=0.086  Sum_probs=47.3

Q ss_pred             EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc
Q 026145           98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG  162 (243)
Q Consensus        98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~  162 (243)
                      ...|++++|++.+......-.       +....+-.+|..+.+.|++++|...|...|..+|++.
T Consensus        15 ~e~g~~~~AL~~L~~~~~~I~-------Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~   72 (517)
T PF12569_consen   15 EEAGDYEEALEHLEKNEKQIL-------DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY   72 (517)
T ss_pred             HHCCCHHHHHHHHHhhhhhCC-------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence            345788999998887665555       6677788889999999999999999999999888874

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=1.3e-07  Score=77.01  Aligned_cols=111  Identities=18%  Similarity=0.170  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG  205 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  205 (243)
                      ..+..|+-.+..++..+++..|+.+-+++|..+|.+.  .++...|..+..+++.++|+-.|+.|..+.|...+.|..+-
T Consensus       298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~--~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~  375 (564)
T KOG1174|consen  298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNH--EALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLF  375 (564)
T ss_pred             cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccc--hHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            3444566667778888899999999999999999987  88888899999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCchhhhhhh
Q 026145          206 DVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFK  238 (243)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  238 (243)
                      .+|...|++.||...-+.++..-|.+..+..+.
T Consensus       376 hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~  408 (564)
T KOG1174|consen  376 HSYLAQKRFKEANALANWTIRLFQNSARSLTLF  408 (564)
T ss_pred             HHHHhhchHHHHHHHHHHHHHHhhcchhhhhhh
Confidence            999999999998888888888888887776665

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.77  E-value=1.2e-07  Score=82.40  Aligned_cols=113  Identities=22%  Similarity=0.208  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 026145          127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGD  206 (243)
Q Consensus       127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  206 (243)
                      ....|...+..+...++.++|.....++-.++|...  ..|+.+|.++...|.+.+|.+.|..++.++|+++.+...+|.
T Consensus       649 ~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~--~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~  726 (799)
T KOG4162|consen  649 LQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSA--SVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAE  726 (799)
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhH--HHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence            455677888899999999999999999999999965  999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHH--HHHHHhccCCCchhhhhhhhhc
Q 026145          207 VFLAMDQYDAAEK--SYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       207 ~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ++...|+..-|..  .+..+++++|.++++|..++.|
T Consensus       727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v  763 (799)
T KOG4162|consen  727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEV  763 (799)
T ss_pred             HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            9999998888887  9999999999999999998876

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.76  E-value=2.1e-07  Score=65.58  Aligned_cols=105  Identities=19%  Similarity=0.120  Sum_probs=87.9

Q ss_pred             cCCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhH
Q 026145           92 PDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDR  170 (243)
Q Consensus        92 ~~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~l  170 (243)
                      ..|......|+++.|++.|+.+....|..    .....+...+|.++++.++|++|+..+++-++++|.++ +..+++.+
T Consensus        15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g----~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~   90 (142)
T PF13512_consen   15 QEAQEALQKGNYEEAIKQLEALDTRYPFG----EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR   90 (142)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCCC----cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence            33444456679999999999988777522    24556788999999999999999999999999999886 55789999


Q ss_pred             HHHHHHcCC---------------HHHHHHHHHHHHHhCCCcHHH
Q 026145          171 CLARLTMGN---------------FSAALEDVREALELAPNYTEA  200 (243)
Q Consensus       171 a~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~~  200 (243)
                      |.+++.+..               ...|...|++.+...|++..+
T Consensus        91 gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   91 GLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            999999887               899999999999999988644

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.75  E-value=1.3e-07  Score=80.75  Aligned_cols=127  Identities=14%  Similarity=0.167  Sum_probs=117.0

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      .|..+..+|+-++|.+.....+..++       ...-.|.-+|.++....+|++|+.+|..|+.+.|+|.  ..|..++.
T Consensus        47 kGL~L~~lg~~~ea~~~vr~glr~d~-------~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~--qilrDlsl  117 (700)
T KOG1156|consen   47 KGLTLNCLGKKEEAYELVRLGLRNDL-------KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL--QILRDLSL  117 (700)
T ss_pred             ccchhhcccchHHHHHHHHHHhccCc-------ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH--HHHHHHHH
Confidence            56666778899999999999888776       7788999999999999999999999999999999988  99999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145          173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID  228 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  228 (243)
                      ...++++++.....-.+.++..|.....|+..+.++.-.|++..|...++...+..
T Consensus       118 LQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen  118 LQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ  173 (700)
T ss_pred             HHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999888877655

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.74  E-value=7.1e-08  Score=82.25  Aligned_cols=129  Identities=13%  Similarity=0.048  Sum_probs=99.8

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHH
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFS  181 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~  181 (243)
                      ++.+..+..+..+...|       .....+-..|..+...|+-++|......++..++.+.  ..|.-+|.++...++|+
T Consensus        22 QYkkgLK~~~~iL~k~~-------eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~--vCwHv~gl~~R~dK~Y~   92 (700)
T KOG1156|consen   22 QYKKGLKLIKQILKKFP-------EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH--VCWHVLGLLQRSDKKYD   92 (700)
T ss_pred             HHHhHHHHHHHHHHhCC-------ccchhHHhccchhhcccchHHHHHHHHHHhccCcccc--hhHHHHHHHHhhhhhHH
Confidence            56666666666666665       5666777778888888888888888888888877766  77888888888888888


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145          182 AALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       182 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  239 (243)
                      +|+.+|+.|+++.|+|...|.-++....++++++-....-.+.+++.|.....|.-++
T Consensus        93 eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~A  150 (700)
T KOG1156|consen   93 EAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFA  150 (700)
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHH
Confidence            8888888888888888888888888888888888888888888888887766665444

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.72  E-value=1.9e-08  Score=89.31  Aligned_cols=136  Identities=17%  Similarity=0.187  Sum_probs=82.5

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |..|....+...|.+-|++++..++       .++.++-..+.++.+..+++.|....-.+-+..|...-...|..+|..
T Consensus       499 G~iYrd~~Dm~RA~kCf~KAFeLDa-------tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y  571 (1238)
T KOG1127|consen  499 GQIYRDSDDMKRAKKCFDKAFELDA-------TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY  571 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCc-------hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence            4444444355566666666666655       445555555555555555555555544433333322112344556677


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhh
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKS  236 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  236 (243)
                      |...+++..|+..|+.+++.+|.+..+|..+|.+|...|++..|++.|.++..++|++..+..
T Consensus       572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~f  634 (1238)
T KOG1127|consen  572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRF  634 (1238)
T ss_pred             ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHH
Confidence            777777777777777777777777777777777777777777777777777777776655443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.72  E-value=2.3e-07  Score=74.56  Aligned_cols=137  Identities=22%  Similarity=0.178  Sum_probs=102.5

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHhhccCCCCc----hHHHHHhH
Q 026145           96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEK-ANFSEADGFLSQAIELKPFGG----IHVLYKDR  170 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~~----~~~~~~~l  170 (243)
                      .|... ++++|++.+++++..-. .......-+..+..+|.++... +++++|+++|++|++....+.    ....+...
T Consensus        84 ~~k~~-~~~~Ai~~~~~A~~~y~-~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~  161 (282)
T PF14938_consen   84 CYKKG-DPDEAIECYEKAIEIYR-EAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKA  161 (282)
T ss_dssp             HHHHT-THHHHHHHHHHHHHHHH-HCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHhh-CHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHH
Confidence            33444 88899999888764321 2222335677899999999998 999999999999998753221    24678899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhh
Q 026145          171 CLARLTMGNFSAALEDVREALELAPNY-------TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRS  234 (243)
Q Consensus       171 a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  234 (243)
                      |.++..+|+|++|++.|+++....-++       ...++..+.|+...|+...|...+++....+|.....
T Consensus       162 A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s  232 (282)
T PF14938_consen  162 ADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS  232 (282)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence            999999999999999999998753221       2356778899999999999999999999999976544

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.72  E-value=5.5e-07  Score=62.33  Aligned_cols=93  Identities=23%  Similarity=0.107  Sum_probs=78.9

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCC---CchHHHHHhH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPF---GGIHVLYKDR  170 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~l  170 (243)
                      +..+...|++++|+.+|++++..+.    .......++..+|.++...|++++|+..+++++...|+   +.  .+...+
T Consensus         8 A~a~d~~G~~~~Ai~~Y~~Al~~gL----~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~--~l~~f~   81 (120)
T PF12688_consen    8 AWAHDSLGREEEAIPLYRRALAAGL----SGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNA--ALRVFL   81 (120)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCC----CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccH--HHHHHH
Confidence            3445678899999999999997653    12255678999999999999999999999999999888   44  667778


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Q 026145          171 CLARLTMGNFSAALEDVREALE  192 (243)
Q Consensus       171 a~~~~~~~~~~~A~~~~~~al~  192 (243)
                      +.++...|++++|+..+-.++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999988875

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.71  E-value=9.4e-07  Score=64.70  Aligned_cols=121  Identities=17%  Similarity=0.218  Sum_probs=99.9

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhc-cCCCCchHHHHHhHHHHHHHcCCH
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIE-LKPFGGIHVLYKDRCLARLTMGNF  180 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~~la~~~~~~~~~  180 (243)
                      +|+....-..+.+...        ......+.+|+.+.+.|++.+|...|++++. +..+++  ..+..++...+..+++
T Consensus        71 dP~R~~Rea~~~~~~A--------pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~--a~lLglA~Aqfa~~~~  140 (251)
T COG4700          71 DPERHLREATEELAIA--------PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDA--AMLLGLAQAQFAIQEF  140 (251)
T ss_pred             ChhHHHHHHHHHHhhc--------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH--HHHHHHHHHHHhhccH
Confidence            4554444444444434        3445677899999999999999999999986 355655  8899999999999999


Q ss_pred             HHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 026145          181 SAALEDVREALELAPN--YTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIR  232 (243)
Q Consensus       181 ~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  232 (243)
                      ..|...+++..+.+|.  .++....+|.+|..+|++.+|...|+.++...|+..
T Consensus       141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~  194 (251)
T COG4700         141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ  194 (251)
T ss_pred             HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH
Confidence            9999999999998885  477889999999999999999999999999998754

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.69  E-value=8.6e-07  Score=63.94  Aligned_cols=114  Identities=18%  Similarity=0.143  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELAPNY---TEAY  201 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~  201 (243)
                      ..+...+.........+++..+...+++.+..+|+.+ -..+.+.+|.+++..|++++|...|++++...|+.   +.+.
T Consensus         9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~   88 (145)
T PF09976_consen    9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR   88 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence            3455566666666679999999999999999999873 23678889999999999999999999999987654   4588


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          202 ICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       202 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      ++++.++...|++++|+..++. +.-.+-.+.++..++.
T Consensus        89 l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gd  126 (145)
T PF09976_consen   89 LRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGD  126 (145)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHH
Confidence            9999999999999999999966 3333334444444443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=2.5e-07  Score=75.40  Aligned_cols=134  Identities=13%  Similarity=0.096  Sum_probs=98.4

Q ss_pred             eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHH
Q 026145           95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLAR  174 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~  174 (243)
                      ..+...|+.++++..|++..-.+|       .....+-..|..+...|++++-..+-...+..+....  .-|+--+...
T Consensus       240 k~~~~~Gdn~~a~~~Fe~~~~~dp-------y~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta--~~wfV~~~~l  310 (564)
T KOG1174|consen  240 KCLYYNGDYFQAEDIFSSTLCANP-------DNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTA--SHWFVHAQLL  310 (564)
T ss_pred             hhhhhhcCchHHHHHHHHHhhCCh-------hhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcch--hhhhhhhhhh
Confidence            444455555666666655555555       5555555555555555565555555555555544333  5566667778


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhh
Q 026145          175 LTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSF  237 (243)
Q Consensus       175 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  237 (243)
                      +..++|+.|+.+.+++|..+|.+..++...|.++...++.++|+-.|+.|..+.|..-+.+.-
T Consensus       311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~G  373 (564)
T KOG1174|consen  311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRG  373 (564)
T ss_pred             hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHH
Confidence            888999999999999999999999999999999999999999999999999999987766643

>TIGR00540 hemY_coli hemY protein

Probab=98.67  E-value=7.7e-07  Score=75.35  Aligned_cols=113  Identities=17%  Similarity=0.195  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHH
Q 026145          127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYT-EAYICQG  205 (243)
Q Consensus       127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la  205 (243)
                      .+......|...+..|+++.|.+...++.+..|++.  ..+...|.+...+|+++.|..++.++.+..|++. .+....+
T Consensus        83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~--~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a  160 (409)
T TIGR00540        83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPV--LNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIART  160 (409)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHH
Confidence            444556678888899999999999999999998865  6677779999999999999999999999999875 4666679


Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          206 DVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      .++...|++++|...+++.++.+|+++.+...+..+
T Consensus       161 ~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~  196 (409)
T TIGR00540       161 RILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEA  196 (409)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999999999999999999988776654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.66  E-value=4.5e-08  Score=78.59  Aligned_cols=134  Identities=13%  Similarity=0.061  Sum_probs=100.3

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      .+..+...|++++|++++...            .........-.++...++++.|...++..-+.+.+..  -+....++
T Consensus       108 ~A~i~~~~~~~~~AL~~l~~~------------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~--l~qLa~aw  173 (290)
T PF04733_consen  108 AATILFHEGDYEEALKLLHKG------------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSI--LTQLAEAW  173 (290)
T ss_dssp             HHHHHCCCCHHHHHHCCCTTT------------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHH--HHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcc------------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHH--HHHHHHHH
Confidence            345566677888888776543            1234455567789999999999999999988887743  23333344


Q ss_pred             HHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          173 ARLTMG--NFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       173 ~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      +.+..|  .+.+|...|++.....|.++..+..++.++..+|+|++|.+.+.+++..+|.++++..++..
T Consensus       174 v~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv  243 (290)
T PF04733_consen  174 VNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIV  243 (290)
T ss_dssp             HHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHH
T ss_pred             HHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence            444555  69999999999877778889999999999999999999999999999999999998776543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.63  E-value=7.9e-07  Score=69.06  Aligned_cols=107  Identities=11%  Similarity=0.110  Sum_probs=92.0

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCL  172 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~  172 (243)
                      +.-+...|++..|..-|...++..|    ++...+.++|.+|..++.+|+|++|...|..+++..|+++ .+++++.+|.
T Consensus       148 A~~~~ksgdy~~A~~~F~~fi~~YP----~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         148 ALDLYKSGDYAEAEQAFQAFIKKYP----NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCC----CCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            3444567799999999999998876    3346777899999999999999999999999999998875 3589999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 026145          173 ARLTMGNFSAALEDVREALELAPNYTEAYICQ  204 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  204 (243)
                      +...+|+-++|-..|+++++..|+...+....
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak  255 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLAK  255 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            99999999999999999999999987665443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.60  E-value=9.2e-07  Score=76.54  Aligned_cols=113  Identities=14%  Similarity=0.128  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHHhcC---HHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcC--------CHHHHHHHHHHHHHh-
Q 026145          126 LEALALRKRAEAEFEKAN---FSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMG--------NFSAALEDVREALEL-  193 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al~~-  193 (243)
                      ..+..++..|..+...++   ...|+.+|++|++++|++.  .++-.++.++....        +...+.+..++++.+ 
T Consensus       337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a--~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~  414 (517)
T PRK10153        337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFT--YAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP  414 (517)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc
Confidence            366677888888876544   8899999999999999976  88887777775542        345666666776664 


Q ss_pred             -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          194 -APNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       194 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                       +|.++.++.-+|..+...|++++|...+++++.++|+ ..++..++++
T Consensus       415 ~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~  462 (517)
T PRK10153        415 ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKV  462 (517)
T ss_pred             cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHH
Confidence             7778889999999999999999999999999999994 6777777654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.59  E-value=1.1e-06  Score=73.11  Aligned_cols=102  Identities=19%  Similarity=0.125  Sum_probs=92.8

Q ss_pred             HHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 026145          136 EAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYD  215 (243)
Q Consensus       136 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  215 (243)
                      ..+...++++.|+..+++..+.+|+     +...++.++...++..+|++.+.++++.+|.+...+...+..+...++++
T Consensus       177 ~~l~~t~~~~~ai~lle~L~~~~pe-----v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~  251 (395)
T PF09295_consen  177 KYLSLTQRYDEAIELLEKLRERDPE-----VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE  251 (395)
T ss_pred             HHHhhcccHHHHHHHHHHHHhcCCc-----HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence            3344568999999999999988875     45568999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCCchhhhhhhhhcc
Q 026145          216 AAEKSYSTCLQIDPSIRRSKSFKVSST  242 (243)
Q Consensus       216 ~A~~~~~~al~~~p~~~~~~~~~a~i~  242 (243)
                      .|+...++++.+.|++-..|..+++++
T Consensus       252 lAL~iAk~av~lsP~~f~~W~~La~~Y  278 (395)
T PF09295_consen  252 LALEIAKKAVELSPSEFETWYQLAECY  278 (395)
T ss_pred             HHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            999999999999999999999998874

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.58  E-value=4.4e-07  Score=72.71  Aligned_cols=141  Identities=15%  Similarity=0.123  Sum_probs=113.9

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc--------------CC
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIEL--------------KP  159 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------------~p  159 (243)
                      +..+.+.|++++|...++-+...+.       ..+..+.++|.+++-.|.|.+|...-.++-+.              +.
T Consensus        64 a~C~fhLgdY~~Al~~Y~~~~~~~~-------~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklnd  136 (557)
T KOG3785|consen   64 AHCYFHLGDYEEALNVYTFLMNKDD-------APAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLND  136 (557)
T ss_pred             HHHHHhhccHHHHHHHHHHHhccCC-------CCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCc
Confidence            4456788899999999988876554       55778889999999999999998877665321              11


Q ss_pred             CCc----------hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 026145          160 FGG----------IHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP  229 (243)
Q Consensus       160 ~~~----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  229 (243)
                      +..          ..+-...++.+++..-.|++|++.|.+++.-+|+....-..+|.||+++.-|+-+.+.+.-.++..|
T Consensus       137 Ek~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~p  216 (557)
T KOG3785|consen  137 EKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFP  216 (557)
T ss_pred             HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCC
Confidence            000          1133456788888888999999999999999999888889999999999999999999999999999


Q ss_pred             Cchhhhhhhhhc
Q 026145          230 SIRRSKSFKVSS  241 (243)
Q Consensus       230 ~~~~~~~~~a~i  241 (243)
                      +++.+..+++-.
T Consensus       217 dStiA~NLkacn  228 (557)
T KOG3785|consen  217 DSTIAKNLKACN  228 (557)
T ss_pred             CcHHHHHHHHHH
Confidence            999998776543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.58  E-value=2.1e-06  Score=73.80  Aligned_cols=126  Identities=18%  Similarity=0.021  Sum_probs=94.0

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHH
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFS  181 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~  181 (243)
                      .++.|..+|.++....        -....|+.-+.....+++.++|+.+++++++..|+..  .+|.-+|+++-++++.+
T Consensus       633 e~eraR~llakar~~s--------gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~--Kl~lmlGQi~e~~~~ie  702 (913)
T KOG0495|consen  633 ELERARDLLAKARSIS--------GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFH--KLWLMLGQIEEQMENIE  702 (913)
T ss_pred             cHHHHHHHHHHHhccC--------CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH--HHHHHHhHHHHHHHHHH
Confidence            7777777777776555        3455666666766777777788877788887777744  77777788877777777


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhh
Q 026145          182 AALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSF  237 (243)
Q Consensus       182 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  237 (243)
                      .|...|...++.-|+.+..|..++.+-.+.|..-.|...+.++.--+|++...|..
T Consensus       703 ~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle  758 (913)
T KOG0495|consen  703 MAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLE  758 (913)
T ss_pred             HHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHH
Confidence            77777777777777777777777777777777777777777777777777766643

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.57  E-value=2.8e-07  Score=82.15  Aligned_cols=126  Identities=17%  Similarity=0.014  Sum_probs=107.6

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHH
Q 026145           96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL  175 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~  175 (243)
                      .|....+++.|..+....-...+     .......|..+|..+.+.+++.+|+..|+.+++.+|.+.  ..|..+|.+|.
T Consensus       535 tyae~~~we~a~~I~l~~~qka~-----a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~--n~W~gLGeAY~  607 (1238)
T KOG1127|consen  535 TYAEESTWEEAFEICLRAAQKAP-----AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDY--NLWLGLGEAYP  607 (1238)
T ss_pred             HhhccccHHHHHHHHHHHhhhch-----HHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhH--HHHHHHHHHHH
Confidence            34445588888888554433332     113344577799999999999999999999999999987  99999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145          176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID  228 (243)
Q Consensus       176 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  228 (243)
                      ..|+|..|+..|.++..++|.+..+.+..+......|+|.+|+..++..+...
T Consensus       608 ~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~  660 (1238)
T KOG1127|consen  608 ESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAF  660 (1238)
T ss_pred             hcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999887654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.56  E-value=1.5e-07  Score=53.07  Aligned_cols=41  Identities=24%  Similarity=0.237  Sum_probs=24.0

Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145          165 VLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG  205 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  205 (243)
                      .++..+|..|..+|++++|+..|+++++.+|+++.++..+|
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            34555556666666666666666666666666655555554

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=3.1e-05  Score=60.95  Aligned_cols=157  Identities=21%  Similarity=0.204  Sum_probs=116.1

Q ss_pred             HHHHHHhcCCCcEEEEeeCCCCCC--------CCCCeEEEecCCe---EEEecCCHh-HHHHHHHHHhcCCCCCcchhhH
Q 026145           59 ILETLSSLAPPEVAVKSCGCLGRC--------GAGPNLVALPDGV---VVGHCGTPA-RASEILMVLCGIKSDHDAAKNL  126 (243)
Q Consensus        59 ~~~~l~~~g~~~v~v~~~gc~g~c--------~~~p~~~~~~~g~---~~~~~~~~~-~a~~~l~~~l~~~~~~~~~~~~  126 (243)
                      +++.+....-+.+.+.+..|...-        ..-|+++.+-+|.   .+... .++ ...+.+++++..          
T Consensus        64 ~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~-qPesqlr~~ld~~~~~----------  132 (304)
T COG3118          64 TLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGA-QPESQLRQFLDKVLPA----------  132 (304)
T ss_pred             HHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCcCccccCCC-CcHHHHHHHHHHhcCh----------
Confidence            344444444456888887777632        2457777776663   23333 566 445555665533          


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHH------------------
Q 026145          127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVR------------------  188 (243)
Q Consensus       127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~------------------  188 (243)
                      ....-+..+......|++.+|...|..++...|++.  .+...++.++...|+.+.|...+.                  
T Consensus       133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~--~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i  210 (304)
T COG3118         133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENS--EAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQI  210 (304)
T ss_pred             HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccc--hHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            233455677788899999999999999999999987  999999999999999977755444                  


Q ss_pred             ----------------HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145          189 ----------------EALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID  228 (243)
Q Consensus       189 ----------------~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  228 (243)
                                      +.+..+|++.++.+.+|..+...|+.++|.+.+-..+..+
T Consensus       211 ~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d  266 (304)
T COG3118         211 ELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD  266 (304)
T ss_pred             HHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence                            2233478999999999999999999999999988877764

>PRK11906 transcriptional regulator; Provisional

Probab=98.55  E-value=1.7e-06  Score=72.04  Aligned_cols=116  Identities=16%  Similarity=0.107  Sum_probs=99.1

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHH
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFS  181 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~  181 (243)
                      +..++.+..++++..++       .++.++..+|.++...++++.|+..|++|+.++|+.+  .+|+..|......|+.+
T Consensus       319 ~~~~a~~~A~rAveld~-------~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A--~~~~~~~~~~~~~G~~~  389 (458)
T PRK11906        319 AAQKALELLDYVSDITT-------VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIA--SLYYYRALVHFHNEKIE  389 (458)
T ss_pred             HHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccH--HHHHHHHHHHHHcCCHH
Confidence            66788888889999998       8999999999999999999999999999999999976  99999999999999999


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHhc
Q 026145          182 AALEDVREALELAPNYTEAYICQGDV-FLAMDQYDAAEKSYSTCLQ  226 (243)
Q Consensus       182 ~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~  226 (243)
                      +|.+.++++++++|....+-...-.+ .+-....++|+..|-+-.+
T Consensus       390 ~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (458)
T PRK11906        390 EARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETE  435 (458)
T ss_pred             HHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence            99999999999999876554433333 4445567888888866544

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.55  E-value=1.2e-06  Score=67.41  Aligned_cols=150  Identities=17%  Similarity=0.148  Sum_probs=115.7

Q ss_pred             CeEEEecCCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hH
Q 026145           86 PNLVALPDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IH  164 (243)
Q Consensus        86 p~~~~~~~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~  164 (243)
                      |...+|..|....+.|++++|++.|+.+....| .   +.....+...++..+++.++|++|+...++-+.+.|.++ ..
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p-~---s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d  108 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHP-F---SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD  108 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C---CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence            444455566666778899999999999887765 2   223467788999999999999999999999999999876 45


Q ss_pred             HHHHhHHHHHHHcCC--------HHHHHHHHHHHHHhCCCcHH-----------------HHHHHHHHHHHcCCHHHHHH
Q 026145          165 VLYKDRCLARLTMGN--------FSAALEDVREALELAPNYTE-----------------AYICQGDVFLAMDQYDAAEK  219 (243)
Q Consensus       165 ~~~~~la~~~~~~~~--------~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~g~~~~A~~  219 (243)
                      .+++..|.+++..-+        -.+|+..+++.+...|++.-                 -=...|..|.+.|.+..|+.
T Consensus       109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~n  188 (254)
T COG4105         109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAIN  188 (254)
T ss_pred             HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence            677777888764322        35788899999999997631                 12345778889999999999


Q ss_pred             HHHHHhccCCCchhhhhhhh
Q 026145          220 SYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       220 ~~~~al~~~p~~~~~~~~~a  239 (243)
                      -++.+++..|+.+.....+.
T Consensus       189 R~~~v~e~y~~t~~~~eaL~  208 (254)
T COG4105         189 RFEEVLENYPDTSAVREALA  208 (254)
T ss_pred             HHHHHHhccccccchHHHHH
Confidence            99999998887766655443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.55  E-value=1.6e-06  Score=66.88  Aligned_cols=116  Identities=22%  Similarity=0.236  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELAPNYT---EAY  201 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~  201 (243)
                      ..+..|+..|...+..|+|++|+..|+.+....|-++ ...+...++.++++.++|++|+...++-+++.|.++   .++
T Consensus        32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~  111 (254)
T COG4105          32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY  111 (254)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence            3577899999999999999999999999999988765 357888999999999999999999999999999775   467


Q ss_pred             HHHHHHHHHcC--------CHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          202 ICQGDVFLAMD--------QYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       202 ~~la~~~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      +.+|.+++..=        -..+|+..++..+.-.|++.-+-...+++
T Consensus       112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i  159 (254)
T COG4105         112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI  159 (254)
T ss_pred             HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence            78888876432        24678999999999999987665555444

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.54  E-value=2.1e-07  Score=74.19  Aligned_cols=105  Identities=22%  Similarity=0.175  Sum_probs=94.7

Q ss_pred             ecCCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhH
Q 026145           91 LPDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDR  170 (243)
Q Consensus        91 ~~~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l  170 (243)
                      ...|..|+..|.+++|++.|.+.+...|       .++-.+.++|..|++...|..|...+..|+.++....  .+|..+
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P-------~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~--KAYSRR  171 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYP-------HNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYV--KAYSRR  171 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCC-------CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHH--HHHHHH
Confidence            3467788899999999999999999998       7888899999999999999999999999999998855  999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 026145          171 CLARLTMGNFSAALEDVREALELAPNYTEAYICQ  204 (243)
Q Consensus       171 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  204 (243)
                      +.+...+|...+|-++++.+|++.|++.+..-.+
T Consensus       172 ~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~  205 (536)
T KOG4648|consen  172 MQARESLGNNMEAKKDCETVLALEPKNIELKKSL  205 (536)
T ss_pred             HHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHH
Confidence            9999999999999999999999999876544433

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.51  E-value=7.3e-07  Score=71.66  Aligned_cols=134  Identities=19%  Similarity=0.127  Sum_probs=94.3

Q ss_pred             eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHhH
Q 026145           95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKDR  170 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~l  170 (243)
                      ..|...+++++|.+.|.++..... ...+....+..+...+.++. ..++++|+..|++|+.+.-...    .+..+..+
T Consensus        43 ~~fk~~~~~~~A~~ay~kAa~~~~-~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l  120 (282)
T PF14938_consen   43 NCFKLAKDWEKAAEAYEKAADCYE-KLGDKFEAAKAYEEAANCYK-KGDPDEAIECYEKAIEIYREAGRFSQAAKCLKEL  120 (282)
T ss_dssp             HHHHHTT-CHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHhccchhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            445566677778777776643221 11222345556666666654 4599999999999998743221    35788999


Q ss_pred             HHHHHHc-CCHHHHHHHHHHHHHhCC--Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 026145          171 CLARLTM-GNFSAALEDVREALELAP--NY----TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS  230 (243)
Q Consensus       171 a~~~~~~-~~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  230 (243)
                      |.+|... +++++|++.|++|+.+..  +.    ...+..+|.++..+|+|++|++.|++.....-+
T Consensus       121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~  187 (282)
T PF14938_consen  121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE  187 (282)
T ss_dssp             HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence            9999988 999999999999998742  11    356789999999999999999999999875443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.50  E-value=1.4e-07  Score=49.90  Aligned_cols=32  Identities=34%  Similarity=0.594  Sum_probs=25.7

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 026145          187 VREALELAPNYTEAYICQGDVFLAMDQYDAAE  218 (243)
Q Consensus       187 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  218 (243)
                      |+++|+++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            67788888888888888888888888888775

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.49  E-value=1e-06  Score=66.06  Aligned_cols=102  Identities=19%  Similarity=0.120  Sum_probs=94.1

Q ss_pred             EecCCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHh
Q 026145           90 ALPDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKD  169 (243)
Q Consensus        90 ~~~~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~  169 (243)
                      .+..|+.|...|-.+-|.--|.+++...|       ..+..++.+|..+...|+|+.|.+.|+..++++|.+.  -+..|
T Consensus        68 ~fERGvlYDSlGL~~LAR~DftQaLai~P-------~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~--Ya~lN  138 (297)
T COG4785          68 LFERGVLYDSLGLRALARNDFSQALAIRP-------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--YAHLN  138 (297)
T ss_pred             HHHhcchhhhhhHHHHHhhhhhhhhhcCC-------CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch--HHHhc
Confidence            35678899999999999999999999998       8899999999999999999999999999999999976  88999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 026145          170 RCLARLTMGNFSAALEDVREALELAPNYTEA  200 (243)
Q Consensus       170 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  200 (243)
                      +|..++--|+|.-|.+.+.+-...+|++|.-
T Consensus       139 Rgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR  169 (297)
T COG4785         139 RGIALYYGGRYKLAQDDLLAFYQDDPNDPFR  169 (297)
T ss_pred             cceeeeecCchHhhHHHHHHHHhcCCCChHH
Confidence            9999999999999999999999999988753

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.48  E-value=5.6e-07  Score=50.73  Aligned_cols=42  Identities=19%  Similarity=0.264  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          199 EAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       199 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      .+++.+|.+|..+|++++|++.|+++++.+|+++.++..+++
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            567778888888888888888888888888888888777665

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.47  E-value=4.4e-06  Score=72.12  Aligned_cols=101  Identities=22%  Similarity=0.127  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG  205 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  205 (243)
                      ....+++.+|..+...|++++|+++.+++|+..|..+  +.|...|.++-+.|++.+|.+.++.+..+++.+...-...+
T Consensus       192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~--ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~a  269 (517)
T PF12569_consen  192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLV--ELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCA  269 (517)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHH
Confidence            3456778999999999999999999999999999966  99999999999999999999999999999999988888889


Q ss_pred             HHHHHcCCHHHHHHHHHHHhccC
Q 026145          206 DVFLAMDQYDAAEKSYSTCLQID  228 (243)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~  228 (243)
                      ..+.+.|+.++|.+.+..-...+
T Consensus       270 Ky~LRa~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  270 KYLLRAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             HHHHHCCCHHHHHHHHHhhcCCC
Confidence            99999999999999988776654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.46  E-value=7.8e-08  Score=76.40  Aligned_cols=99  Identities=22%  Similarity=0.351  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 026145          130 ALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFL  209 (243)
Q Consensus       130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  209 (243)
                      -....+...+..|.++.|++.|..+|.++|...  ..|..++.++++++++..|+.++..++.++|+...-|-..+.+..
T Consensus       116 e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a--~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r  193 (377)
T KOG1308|consen  116 DKKVQASEALNDGEFDTAIELFTSAIELNPPLA--ILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER  193 (377)
T ss_pred             HHHHHHHHHhcCcchhhhhcccccccccCCchh--hhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH
Confidence            344456667788999999999999999999966  999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHhccCCC
Q 026145          210 AMDQYDAAEKSYSTCLQIDPS  230 (243)
Q Consensus       210 ~~g~~~~A~~~~~~al~~~p~  230 (243)
                      .+|+|++|..++..+.+++-+
T Consensus       194 llg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  194 LLGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             HhhchHHHHHHHHHHHhcccc
Confidence            999999999999999988743

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.45  E-value=2.8e-06  Score=61.96  Aligned_cols=94  Identities=18%  Similarity=0.060  Sum_probs=70.9

Q ss_pred             HhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhc----------CHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145          103 PARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKA----------NFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus       103 ~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~----------~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      ++.|.+.++.....+|       .++..+++-|.++....          -+++|+.-|++||.++|+..  .+++++|.
T Consensus         7 FE~ark~aea~y~~nP-------~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h--dAlw~lGn   77 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNP-------LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH--DALWCLGN   77 (186)
T ss_dssp             HHHHHHHHHHHHHH-T-------T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H--HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCc-------HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH--HHHHHHHH
Confidence            5678888888788887       77888888888876553          35778888999999999966  99999999


Q ss_pred             HHHHcCC-----------HHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145          173 ARLTMGN-----------FSAALEDVREALELAPNYTEAYICQG  205 (243)
Q Consensus       173 ~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~~~la  205 (243)
                      +|..++.           |++|..+|++|...+|++......|.
T Consensus        78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe  121 (186)
T PF06552_consen   78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE  121 (186)
T ss_dssp             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             HHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            9987664           78899999999999999865544443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=4.4e-06  Score=70.95  Aligned_cols=127  Identities=13%  Similarity=0.184  Sum_probs=103.6

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHH
Q 026145           96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL  175 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~  175 (243)
                      .+...+++++|.....+.+...|       ++..+.+..-.++++.++|++|+...++-....-.+   ...+..+.|.+
T Consensus        21 ~~~~~~e~e~a~k~~~Kil~~~p-------dd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~---~~~fEKAYc~Y   90 (652)
T KOG2376|consen   21 RHGKNGEYEEAVKTANKILSIVP-------DDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN---SFFFEKAYCEY   90 (652)
T ss_pred             HhccchHHHHHHHHHHHHHhcCC-------CcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc---hhhHHHHHHHH
Confidence            45667799999999999998887       778888888889999999999995544433222222   34478999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhh
Q 026145          176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK  235 (243)
Q Consensus       176 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  235 (243)
                      +++..++|+..++   -.++.+..+....|.+++++|+|++|.+.|+..++.+.++.+..
T Consensus        91 rlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~  147 (652)
T KOG2376|consen   91 RLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEE  147 (652)
T ss_pred             HcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHH
Confidence            9999999999998   45677778899999999999999999999999988877665543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.37  E-value=8.5e-07  Score=46.92  Aligned_cols=32  Identities=34%  Similarity=0.507  Sum_probs=17.1

Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 026145          165 VLYKDRCLARLTMGNFSAALEDVREALELAPN  196 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  196 (243)
                      .+|+++|.++..+|++++|+..|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.33  E-value=8.8e-06  Score=56.19  Aligned_cols=97  Identities=24%  Similarity=0.187  Sum_probs=84.3

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc--hHHHHHhHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG--IHVLYKDRC  171 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~la  171 (243)
                      |+.....|+.+.|++.|.+++...|       ..+.+|++.+..+.-+|+.++|+..+++++++.....  -..++..+|
T Consensus        50 ~valaE~g~Ld~AlE~F~qal~l~P-------~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg  122 (175)
T KOG4555|consen   50 AIALAEAGDLDGALELFGQALCLAP-------ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG  122 (175)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhcc-------cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence            4445566799999999999999998       8899999999999999999999999999999875433  246788999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCc
Q 026145          172 LARLTMGNFSAALEDVREALELAPNY  197 (243)
Q Consensus       172 ~~~~~~~~~~~A~~~~~~al~~~p~~  197 (243)
                      .+|..+|+-+.|...|+.+-++....
T Consensus       123 ~lyRl~g~dd~AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  123 LLYRLLGNDDAARADFEAAAQLGSKF  148 (175)
T ss_pred             HHHHHhCchHHHHHhHHHHHHhCCHH
Confidence            99999999999999999998876543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.32  E-value=1.7e-06  Score=45.78  Aligned_cols=33  Identities=30%  Similarity=0.662  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145          199 EAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI  231 (243)
Q Consensus       199 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  231 (243)
                      .+|+++|.++..+|++++|+..|+++++++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            466677777777777777777777777777653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.32  E-value=1.6e-05  Score=64.55  Aligned_cols=119  Identities=16%  Similarity=0.100  Sum_probs=99.6

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHH
Q 026145           96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL  175 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~  175 (243)
                      .+...|+.++|.+++..+++..-        +......  .-...-+++..=+...++.++..|+++  ..+..+|..++
T Consensus       272 ~li~l~~~~~A~~~i~~~Lk~~~--------D~~L~~~--~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~  339 (400)
T COG3071         272 RLIRLGDHDEAQEIIEDALKRQW--------DPRLCRL--IPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLAL  339 (400)
T ss_pred             HHHHcCChHHHHHHHHHHHHhcc--------ChhHHHH--HhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHH
Confidence            44567799999999999987763        2221111  123467889999999999999999988  99999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145          176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQI  227 (243)
Q Consensus       176 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  227 (243)
                      +.+.|.+|...++.+++..| +...+..+|.++.++|+.++|.+..++++.+
T Consensus       340 k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         340 KNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             HhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            99999999999999999888 5677889999999999999999999999854

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.29  E-value=1.9e-06  Score=45.44  Aligned_cols=31  Identities=23%  Similarity=0.612  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 026145          200 AYICQGDVFLAMDQYDAAEKSYSTCLQIDPS  230 (243)
Q Consensus       200 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  230 (243)
                      +++.+|.++..+|++++|++.|+++++++|+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            4444455555555555555555555544444

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.27  E-value=4.9e-05  Score=55.91  Aligned_cols=164  Identities=15%  Similarity=0.100  Sum_probs=118.5

Q ss_pred             ccCccCHHHHHHHHHh-cCCC-cEEEEeeCCCCCCCCCCeEEE-ecCCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhH
Q 026145           50 TCRRQGSMQILETLSS-LAPP-EVAVKSCGCLGRCGAGPNLVA-LPDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNL  126 (243)
Q Consensus        50 ~c~~~G~~~~~~~l~~-~g~~-~v~v~~~gc~g~c~~~p~~~~-~~~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~  126 (243)
                      ....+|++.+..+++. +.+. .++- .+.   .-...|++.- +-.+......|++.+|...|++++...-      ..
T Consensus        53 l~~~R~a~~~~~a~~q~ldP~R~~Re-a~~---~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~f------A~  122 (251)
T COG4700          53 LGADRHAHTLLMALQQKLDPERHLRE-ATE---ELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIF------AH  122 (251)
T ss_pred             hcccchhHHHHHHHHHhcChhHHHHH-HHH---HHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcccc------CC
Confidence            3455678888887777 3331 1100 000   0112344321 1124445677899999999998874331      14


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 026145          127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGD  206 (243)
Q Consensus       127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  206 (243)
                      ++..+..+++..+..+++..|...+++..+.+|....++....+|.++...|++.+|...|+.++...| .+.+....+.
T Consensus       123 d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e  201 (251)
T COG4700         123 DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAE  201 (251)
T ss_pred             CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHH
Confidence            577888999999999999999999999999988643336677789999999999999999999999888 5788888999


Q ss_pred             HHHHcCCHHHHHHHHHHH
Q 026145          207 VFLAMDQYDAAEKSYSTC  224 (243)
Q Consensus       207 ~~~~~g~~~~A~~~~~~a  224 (243)
                      .+.++|+.++|..-+...
T Consensus       202 ~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         202 MLAKQGRLREANAQYVAV  219 (251)
T ss_pred             HHHHhcchhHHHHHHHHH
Confidence            999999888876655443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.26  E-value=5.3e-06  Score=67.87  Aligned_cols=134  Identities=14%  Similarity=-0.019  Sum_probs=102.5

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCC----CCchHHHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKP----FGGIHVLYK  168 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~~  168 (243)
                      .|..|.-.|++++++..-+.-+.... +-.++...-.++.++|+++.-.|+++.|+++|+..+.+.-    ...-+...+
T Consensus       201 LGNTyYlLGdf~~ai~~H~~RL~ia~-efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscY  279 (639)
T KOG1130|consen  201 LGNTYYLLGDFDQAIHFHKLRLEIAQ-EFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCY  279 (639)
T ss_pred             cCceeeeeccHHHHHHHHHHHHHHHH-HhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence            45667778899999987765443321 2223334556788999999999999999999999876532    111236678


Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145          169 DRCLARLTMGNFSAALEDVREALELAP------NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQI  227 (243)
Q Consensus       169 ~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  227 (243)
                      .+|..|.-+++++.|+.++++-+++..      ....+++.+|.++..+|..++|..+..+.+++
T Consensus       280 SLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  280 SLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            899999999999999999998776643      23568999999999999999999888777664

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=1.2e-05  Score=64.72  Aligned_cols=131  Identities=15%  Similarity=0.125  Sum_probs=96.8

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHH
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFS  181 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~  181 (243)
                      ++.-|+.+++-....+. ++     .......+|.+++..|+|++|+..|.-+.+.+.-++  +.+.+++.|++-+|.|.
T Consensus        37 DytGAislLefk~~~~~-EE-----E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~--el~vnLAcc~FyLg~Y~  108 (557)
T KOG3785|consen   37 DYTGAISLLEFKLNLDR-EE-----EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPA--ELGVNLACCKFYLGQYI  108 (557)
T ss_pred             cchhHHHHHHHhhccch-hh-----hHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCc--ccchhHHHHHHHHHHHH
Confidence            88899999887665553 11     123334578999999999999999999888655444  89999999999999999


Q ss_pred             HHHHHHHHHH--------------HhCC------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhh
Q 026145          182 AALEDVREAL--------------ELAP------------NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK  235 (243)
Q Consensus       182 ~A~~~~~~al--------------~~~p------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  235 (243)
                      +|.....++-              +++.            +..+-...+|.+++..-.|++|++.|.+.+.-+|+.....
T Consensus       109 eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alN  188 (557)
T KOG3785|consen  109 EAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALN  188 (557)
T ss_pred             HHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhH
Confidence            9988776542              1111            1122344567777777789999999999999999876665


Q ss_pred             hhhhh
Q 026145          236 SFKVS  240 (243)
Q Consensus       236 ~~~a~  240 (243)
                      .+.+-
T Consensus       189 Vy~AL  193 (557)
T KOG3785|consen  189 VYMAL  193 (557)
T ss_pred             HHHHH
Confidence            55443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.24  E-value=9.4e-07  Score=46.69  Aligned_cols=34  Identities=26%  Similarity=0.430  Sum_probs=31.3

Q ss_pred             HHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHH
Q 026145          150 FLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALE  185 (243)
Q Consensus       150 ~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~  185 (243)
                      .|+++|+++|+++  .+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~--~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNA--EAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCH--HHHHHHHHHHHHCcCHHhhcC
Confidence            3789999999988  999999999999999999863

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.23  E-value=8.3e-07  Score=72.44  Aligned_cols=126  Identities=16%  Similarity=0.147  Sum_probs=98.6

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHhHHHHHHHc
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKDRCLARLTM  177 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~la~~~~~~  177 (243)
                      .++.|.++|+.-+.... ...+......++-++|++|+-.|+|++|+..-+.-+.+..+..    ...++.++|.++.-+
T Consensus       170 al~~Av~fy~eNL~l~~-~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl  248 (639)
T KOG1130|consen  170 ALENAVKFYMENLELSE-KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL  248 (639)
T ss_pred             HHHHHHHHHHHHHHHHH-HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence            56677777776554432 2223335566788999999999999999999888887754432    347899999999999


Q ss_pred             CCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145          178 GNFSAALEDVREALELAP------NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID  228 (243)
Q Consensus       178 ~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  228 (243)
                      |+++.|+++|.+.+.+.-      ..+...+.+|..|.-+.+++.|+.++++-+++.
T Consensus       249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA  305 (639)
T KOG1130|consen  249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA  305 (639)
T ss_pred             cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998776532      235678899999999999999999999977664

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.21  E-value=3.1e-05  Score=65.96  Aligned_cols=116  Identities=13%  Similarity=0.105  Sum_probs=90.6

Q ss_pred             EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc
Q 026145           98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM  177 (243)
Q Consensus        98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~  177 (243)
                      .+.+.+++|.++.+......        ......+..|.+.++.+..++|+..++   ..++.+.  .+....|++++++
T Consensus        57 Iq~~ky~~ALk~ikk~~~~~--------~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~--~ll~L~AQvlYrl  123 (652)
T KOG2376|consen   57 IQLDKYEDALKLIKKNGALL--------VINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDD--KLLELRAQVLYRL  123 (652)
T ss_pred             hhhhHHHHHHHHHHhcchhh--------hcchhhHHHHHHHHHcccHHHHHHHHh---cccccch--HHHHHHHHHHHHH
Confidence            45568999997776544322        112233799999999999999999999   3455544  6788899999999


Q ss_pred             CCHHHHHHHHHHHHHhCC-------------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145          178 GNFSAALEDVREALELAP-------------------------------NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ  226 (243)
Q Consensus       178 ~~~~~A~~~~~~al~~~p-------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  226 (243)
                      ++|++|+..|+..++.+.                               ++.+.+|+.|-++...|+|.+|++.+++++.
T Consensus       124 ~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~  203 (652)
T KOG2376|consen  124 ERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR  203 (652)
T ss_pred             hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            999999999998765431                               1346789999999999999999999999943

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.20  E-value=1.8e-05  Score=62.37  Aligned_cols=127  Identities=17%  Similarity=0.079  Sum_probs=97.3

Q ss_pred             cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCC
Q 026145          100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN  179 (243)
Q Consensus       100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~  179 (243)
                      ..+++++++++..-....|       .+-..+..+|.+|+...+|..|-..|++.-...|...  ...+..+..++..+.
T Consensus        23 d~ry~DaI~~l~s~~Er~p-------~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~--qYrlY~AQSLY~A~i   93 (459)
T KOG4340|consen   23 DARYADAIQLLGSELERSP-------RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE--QYRLYQAQSLYKACI   93 (459)
T ss_pred             HhhHHHHHHHHHHHHhcCc-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH--HHHHHHHHHHHHhcc
Confidence            3488999999988777776       6777888999999999999999999999999999854  666667888888888


Q ss_pred             HHHHHHHHHHHHH------------------------------hCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145          180 FSAALEDVREALE------------------------------LAP--NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQI  227 (243)
Q Consensus       180 ~~~A~~~~~~al~------------------------------~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  227 (243)
                      +.+|+........                              .-|  +.+....+.|-++++.|+|++|++-|+.+++.
T Consensus        94 ~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv  173 (459)
T KOG4340|consen   94 YADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV  173 (459)
T ss_pred             cHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhh
Confidence            8877765543221                              113  34566777888888888888888888888887


Q ss_pred             CCCchhhh
Q 026145          228 DPSIRRSK  235 (243)
Q Consensus       228 ~p~~~~~~  235 (243)
                      ..-++-+-
T Consensus       174 sGyqpllA  181 (459)
T KOG4340|consen  174 SGYQPLLA  181 (459)
T ss_pred             cCCCchhH
Confidence            65554433

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.19  E-value=5.4e-06  Score=43.66  Aligned_cols=33  Identities=33%  Similarity=0.413  Sum_probs=20.8

Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 026145          165 VLYKDRCLARLTMGNFSAALEDVREALELAPNY  197 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  197 (243)
                      .+++.+|.+++.+|++++|++.++++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            456666666666666666666666666666653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.15  E-value=2.8e-05  Score=70.44  Aligned_cols=106  Identities=8%  Similarity=-0.054  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 026145          131 LRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLA  210 (243)
Q Consensus       131 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  210 (243)
                      +..+...+.+.|+.++|.++|+...+..+-.+....|..+...+.+.|++++|.+.+++. ...| +...|..+..++..
T Consensus       429 ~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~  506 (697)
T PLN03081        429 FLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRI  506 (697)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHH
Confidence            334444444555555555555554432111111134555556666666666666655543 1223 34456666666777


Q ss_pred             cCCHHHHHHHHHHHhccCCCchhhhhhh
Q 026145          211 MDQYDAAEKSYSTCLQIDPSIRRSKSFK  238 (243)
Q Consensus       211 ~g~~~~A~~~~~~al~~~p~~~~~~~~~  238 (243)
                      .|+++.|...+++.+.+.|++...+..+
T Consensus       507 ~g~~~~a~~~~~~l~~~~p~~~~~y~~L  534 (697)
T PLN03081        507 HKNLELGRLAAEKLYGMGPEKLNNYVVL  534 (697)
T ss_pred             cCCcHHHHHHHHHHhCCCCCCCcchHHH
Confidence            7777777777777777777765554443

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=3.4e-05  Score=58.82  Aligned_cols=92  Identities=14%  Similarity=-0.008  Sum_probs=83.7

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      .|..+.....+.+|+..|.+++..+|       ..+..|.+.+.++++..+|+.+.....+++++.|+..  .+.+.+|.
T Consensus        16 ~gnk~f~~k~y~~ai~~y~raI~~nP-------~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~v--k~h~flg~   86 (284)
T KOG4642|consen   16 QGNKCFIPKRYDDAIDCYSRAICINP-------TVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLV--KAHYFLGQ   86 (284)
T ss_pred             ccccccchhhhchHHHHHHHHHhcCC-------CcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHH--HHHHHHHH
Confidence            45555666699999999999999998       8888999999999999999999999999999999966  99999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHh
Q 026145          173 ARLTMGNFSAALEDVREALEL  193 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~  193 (243)
                      +.+....|++|+..++++..+
T Consensus        87 ~~l~s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   87 WLLQSKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             HHHhhccccHHHHHHHHHHHH
Confidence            999999999999999999654

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.13  E-value=3.4e-06  Score=70.16  Aligned_cols=107  Identities=23%  Similarity=0.162  Sum_probs=96.5

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHH
Q 026145           96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL  175 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~  175 (243)
                      .+...++++.|+..+.+++...|       +.+..+-+++..+.+.++|..|+..+.+|++.+|...  .+|+.+|.+..
T Consensus        13 ~~l~~~~fd~avdlysKaI~ldp-------nca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~--K~Y~rrg~a~m   83 (476)
T KOG0376|consen   13 EALKDKVFDVAVDLYSKAIELDP-------NCAIYFANRALAHLKVESFGGALHDALKAIELDPTYI--KAYVRRGTAVM   83 (476)
T ss_pred             hhcccchHHHHHHHHHHHHhcCC-------cceeeechhhhhheeechhhhHHHHHHhhhhcCchhh--heeeeccHHHH
Confidence            33455599999999999999998       8888888999999999999999999999999999966  99999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 026145          176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAM  211 (243)
Q Consensus       176 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  211 (243)
                      .++++.+|+..|++...+.|+++.+...+..|-...
T Consensus        84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~v  119 (476)
T KOG0376|consen   84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIV  119 (476)
T ss_pred             hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHH
Confidence            999999999999999999999999888777765443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.13  E-value=0.00021  Score=51.45  Aligned_cols=96  Identities=24%  Similarity=0.188  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc--------------------hHHHHHhHHHHHHHcCCHHHHHHHHHHH
Q 026145          131 LRKRAEAEFEKANFSEADGFLSQAIELKPFGG--------------------IHVLYKDRCLARLTMGNFSAALEDVREA  190 (243)
Q Consensus       131 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--------------------~~~~~~~la~~~~~~~~~~~A~~~~~~a  190 (243)
                      +...|......++...++..+.+++.+...+.                    ...+...++..+...|++++|+..++++
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   88 (146)
T PF03704_consen    9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA   88 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            34446666677899999999999998753221                    1245566777888999999999999999


Q ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145          191 LELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ  226 (243)
Q Consensus       191 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  226 (243)
                      +..+|.+-.++..+-.+|...|+..+|+..|+++..
T Consensus        89 l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   89 LALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998743

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.11  E-value=0.00021  Score=55.51  Aligned_cols=94  Identities=16%  Similarity=0.150  Sum_probs=70.2

Q ss_pred             cCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH-HH
Q 026145          142 ANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAE-KS  220 (243)
Q Consensus       142 ~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~  220 (243)
                      +.+.+|.-.|++.-+..|..+  ...+..+.|.+.+++|++|...++.+|..++++++.+.++-.+-..+|+-.++. +.
T Consensus       187 ek~qdAfyifeE~s~k~~~T~--~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~  264 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSEKTPPTP--LLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN  264 (299)
T ss_pred             hhhhhHHHHHHHHhcccCCCh--HHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence            457777777777766444444  678888888888888888888888888888888888888888888888765554 55


Q ss_pred             HHHHhccCCCchhhhhh
Q 026145          221 YSTCLQIDPSIRRSKSF  237 (243)
Q Consensus       221 ~~~al~~~p~~~~~~~~  237 (243)
                      +.+....+|+++-...+
T Consensus       265 l~QLk~~~p~h~~vk~~  281 (299)
T KOG3081|consen  265 LSQLKLSHPEHPFVKHL  281 (299)
T ss_pred             HHHHHhcCCcchHHHHH
Confidence            66666677777665543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.11  E-value=8.7e-05  Score=57.52  Aligned_cols=130  Identities=15%  Similarity=0.066  Sum_probs=102.7

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      .+..|.+.+++++|.+.....            ....+.-.--.++.+..+.+-|....++..+++.+.    .+..+|.
T Consensus       114 aa~i~~~~~~~deAl~~~~~~------------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~----tLtQLA~  177 (299)
T KOG3081|consen  114 AAIIYMHDGDFDEALKALHLG------------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA----TLTQLAQ  177 (299)
T ss_pred             hhHHhhcCCChHHHHHHHhcc------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH----HHHHHHH
Confidence            456777888999999887762            223334444677888999999999999999888763    3444555


Q ss_pred             HHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhh
Q 026145          173 ARLT----MGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFK  238 (243)
Q Consensus       173 ~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  238 (243)
                      .+..    -+.+.+|.-.|++.-...|..+.....++.|...+|+|++|...++.++.-++++++...++
T Consensus       178 awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl  247 (299)
T KOG3081|consen  178 AWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL  247 (299)
T ss_pred             HHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence            4443    34689999999998876777899999999999999999999999999999999999887654

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.10  E-value=8.2e-05  Score=69.75  Aligned_cols=118  Identities=14%  Similarity=0.115  Sum_probs=55.4

Q ss_pred             EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc--CCCCchHHHHHhHHHHHH
Q 026145           98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIEL--KPFGGIHVLYKDRCLARL  175 (243)
Q Consensus        98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~la~~~~  175 (243)
                      .+.|++++|.++|+.....+..      .+...|..+...|.+.|++++|+..|.+....  .|+.   ..|..+...+.
T Consensus       590 ~k~G~ldeA~elf~~M~e~gi~------p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~---~TynsLI~a~~  660 (1060)
T PLN03218        590 ANAGQVDRAKEVYQMIHEYNIK------GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE---VFFSALVDVAG  660 (1060)
T ss_pred             HHCCCHHHHHHHHHHHHHcCCC------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHH
Confidence            3445555555555554433310      12234444445555555555555555554433  2321   34444444455


Q ss_pred             HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026145          176 TMGNFSAALEDVREALELA-PNYTEAYICQGDVFLAMDQYDAAEKSYSTC  224 (243)
Q Consensus       176 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  224 (243)
                      +.|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|.+.|++.
T Consensus       661 k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM  710 (1060)
T PLN03218        661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI  710 (1060)
T ss_pred             hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            5555555555555544432 123344455555555555555555555544

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.09  E-value=0.0001  Score=63.49  Aligned_cols=120  Identities=18%  Similarity=0.096  Sum_probs=99.0

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc--hHHHHHhHHHHHHHcCC
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG--IHVLYKDRCLARLTMGN  179 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~la~~~~~~~~  179 (243)
                      ..+.+.++++......|       +.+-.++..|..+...|+.++|++.|++++....+-.  -.-.++.++.++..+.+
T Consensus       248 ~~~~a~~lL~~~~~~yP-------~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~  320 (468)
T PF10300_consen  248 PLEEAEELLEEMLKRYP-------NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHD  320 (468)
T ss_pred             CHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHch
Confidence            78889999999998888       7888899999999999999999999999986433211  13578899999999999


Q ss_pred             HHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCH-------HHHHHHHHHHhccC
Q 026145          180 FSAALEDVREALELAPNY-TEAYICQGDVFLAMDQY-------DAAEKSYSTCLQID  228 (243)
Q Consensus       180 ~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~  228 (243)
                      |++|...+.+..+.+.-+ ....+..|.|+...++.       ++|.+.+.++-.+-
T Consensus       321 w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  321 WEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            999999999999865432 33556679999999999       88888888776543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.07  E-value=5.9e-05  Score=58.44  Aligned_cols=126  Identities=14%  Similarity=0.160  Sum_probs=101.7

Q ss_pred             cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccC----CCCchHHHHHhHHHHHH
Q 026145          100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELK----PFGGIHVLYKDRCLARL  175 (243)
Q Consensus       100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~~la~~~~  175 (243)
                      .+.+.-....+.+.++.+|      ...+.....+|...++.||.+.|..+|+..-+..    .-...-.+..+.+.++.
T Consensus       190 ~kEy~iS~d~~~~vi~~~~------e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l  263 (366)
T KOG2796|consen  190 MKEYVLSVDAYHSVIKYYP------EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL  263 (366)
T ss_pred             chhhhhhHHHHHHHHHhCC------cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee
Confidence            3355556666677666553      1556677888999999999999999999554322    11111257778899999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145          176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI  231 (243)
Q Consensus       176 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  231 (243)
                      -.++|..|...+.+++..+|.++.+..+.|.|+..+|+..+|++.+..++.+.|..
T Consensus       264 g~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  264 GQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             cccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            99999999999999999999999999999999999999999999999999999964

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.06  E-value=0.00011  Score=69.00  Aligned_cols=120  Identities=14%  Similarity=0.077  Sum_probs=61.4

Q ss_pred             EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhc----cCCCCchHHHHHhHHHH
Q 026145           98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIE----LKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~~~la~~  173 (243)
                      .+.|++++|.++|+.....+..      .+...|..+...+.+.|++++|.+.|.+...    +.|+.   ..|..+...
T Consensus       518 ~k~G~~eeAl~lf~~M~~~Gv~------PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~---vTynaLI~a  588 (1060)
T PLN03218        518 ARAGQVAKAFGAYGIMRSKNVK------PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH---ITVGALMKA  588 (1060)
T ss_pred             HHCcCHHHHHHHHHHHHHcCCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH---HHHHHHHHH
Confidence            3445555555555544322210      1233455555555555555555555555543    23332   345555555


Q ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145          174 RLTMGNFSAALEDVREALELA-PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ  226 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  226 (243)
                      |.+.|++++|.+.|++..+.+ +.+...|..+...|.+.|++++|...|.+..+
T Consensus       589 y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~  642 (1060)
T PLN03218        589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK  642 (1060)
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            555666666666665555543 23444555555555556666666655555544

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.05  E-value=0.00035  Score=57.05  Aligned_cols=122  Identities=20%  Similarity=0.169  Sum_probs=103.2

Q ss_pred             EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc
Q 026145           98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM  177 (243)
Q Consensus        98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~  177 (243)
                      ...|++.+|.+.+.+.-+..+       ....++..-+...-+.|+++.|-.+..++-+..+++ ...+...++..+...
T Consensus        95 l~eG~~~qAEkl~~rnae~~e-------~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~-~l~v~ltrarlll~~  166 (400)
T COG3071          95 LFEGDFQQAEKLLRRNAEHGE-------QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDD-TLAVELTRARLLLNR  166 (400)
T ss_pred             HhcCcHHHHHHHHHHhhhcCc-------chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCc-hHHHHHHHHHHHHhC
Confidence            346799999999988766664       556677777888889999999999999999985555 235677889999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145          178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQI  227 (243)
Q Consensus       178 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  227 (243)
                      |+++.|.....++++..|.++.+......+|...|+|.+....+.+.-+-
T Consensus       167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka  216 (400)
T COG3071         167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKA  216 (400)
T ss_pred             CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999988777665543

>PLN03077 Protein ECB2; Provisional

Probab=98.04  E-value=5.6e-05  Score=70.12  Aligned_cols=113  Identities=15%  Similarity=0.086  Sum_probs=51.8

Q ss_pred             EEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc--CCCCchHHHHHhHHHHH
Q 026145           97 VGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIEL--KPFGGIHVLYKDRCLAR  174 (243)
Q Consensus        97 ~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~la~~~  174 (243)
                      |.+.|+.++|.++|+..   .        .+...|..+...|.+.|+.++|++.|++..+.  .|+.   ..|..+-..+
T Consensus       534 y~k~G~~~~A~~~f~~~---~--------~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~---~T~~~ll~a~  599 (857)
T PLN03077        534 YVRCGRMNYAWNQFNSH---E--------KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE---VTFISLLCAC  599 (857)
T ss_pred             HHHcCCHHHHHHHHHhc---C--------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc---ccHHHHHHHH
Confidence            34445555555555443   1        22334555555555555555555555554432  2332   2333333444


Q ss_pred             HHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026145          175 LTMGNFSAALEDVREALELAP--NYTEAYICQGDVFLAMDQYDAAEKSYST  223 (243)
Q Consensus       175 ~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~  223 (243)
                      .+.|++++|.+.|+...+..+  .+...|..+..++.+.|++++|.+.+++
T Consensus       600 ~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~  650 (857)
T PLN03077        600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK  650 (857)
T ss_pred             hhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            455555555555554442211  1223444444555555555555444443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.04  E-value=0.00018  Score=57.80  Aligned_cols=127  Identities=9%  Similarity=0.013  Sum_probs=98.0

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHH-hcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCH
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFE-KANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNF  180 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~  180 (243)
                      ..+.|..+|.++.....       .....|...|..-+. .++.+.|...|+.+++..|.+.  .+|......+...++.
T Consensus        16 g~~~aR~vF~~a~~~~~-------~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~--~~~~~Y~~~l~~~~d~   86 (280)
T PF05843_consen   16 GIEAARKVFKRARKDKR-------CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP--DFWLEYLDFLIKLNDI   86 (280)
T ss_dssp             HHHHHHHHHHHHHCCCC-------S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H--HHHHHHHHHHHHTT-H
T ss_pred             ChHHHHHHHHHHHcCCC-------CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHhCcH
Confidence            46788889999886554       455677777777555 5677779999999999999987  8888888999999999


Q ss_pred             HHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhh
Q 026145          181 SAALEDVREALELAPNYT---EAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSF  237 (243)
Q Consensus       181 ~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  237 (243)
                      +.|...|++++..-|...   ..|......-...|+.+......+++.+..|++......
T Consensus        87 ~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f  146 (280)
T PF05843_consen   87 NNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELF  146 (280)
T ss_dssp             HHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHH
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            999999999998766554   577777788888999999999999999988886655543

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.03  E-value=5.5e-05  Score=68.59  Aligned_cols=94  Identities=14%  Similarity=0.083  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 026145          130 ALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFL  209 (243)
Q Consensus       130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  209 (243)
                      .|..+...+.+.|++++|.+.+++. ...|+.   ..|..+...+...|+++.|...+++.+.+.|++...|..+..+|.
T Consensus       464 ~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~~---~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~  539 (697)
T PLN03081        464 HYACMIELLGREGLLDEAYAMIRRA-PFKPTV---NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYN  539 (697)
T ss_pred             chHhHHHHHHhcCCHHHHHHHHHHC-CCCCCH---HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHH
Confidence            4666778889999999999999874 344543   678889899999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHhcc
Q 026145          210 AMDQYDAAEKSYSTCLQI  227 (243)
Q Consensus       210 ~~g~~~~A~~~~~~al~~  227 (243)
                      +.|++++|.+.+++..+.
T Consensus       540 ~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        540 SSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             hCCCHHHHHHHHHHHHHc
Confidence            999999999999887654

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.00  E-value=0.00058  Score=51.61  Aligned_cols=94  Identities=28%  Similarity=0.450  Sum_probs=50.7

Q ss_pred             HHHHhcCHHHHHHHHHHhhccCCC-CchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCH
Q 026145          137 AEFEKANFSEADGFLSQAIELKPF-GGIHVLYKDRCLARLTMGNFSAALEDVREALELAPN-YTEAYICQGDVFLAMDQY  214 (243)
Q Consensus       137 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~  214 (243)
                      .+...++++.|...|.+++...|. ......+..++..+...++++.|+..+.+++...+. ....+..++..+...+++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY  218 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence            455555566665555555554441 112234444444455555555555555555555555 455555555555555555


Q ss_pred             HHHHHHHHHHhccCCC
Q 026145          215 DAAEKSYSTCLQIDPS  230 (243)
Q Consensus       215 ~~A~~~~~~al~~~p~  230 (243)
                      ++|...+..++...|.
T Consensus       219 ~~a~~~~~~~~~~~~~  234 (291)
T COG0457         219 EEALEYYEKALELDPD  234 (291)
T ss_pred             HHHHHHHHHHHhhCcc
Confidence            5555555555555554

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.99  E-value=0.00073  Score=51.02  Aligned_cols=131  Identities=24%  Similarity=0.261  Sum_probs=103.7

Q ss_pred             EEecCCHhHHHHHHHHHhc--CCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH-H
Q 026145           97 VGHCGTPARASEILMVLCG--IKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL-A  173 (243)
Q Consensus        97 ~~~~~~~~~a~~~l~~~l~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~-~  173 (243)
                      +...+....+...+.....  ..+       .....+...+......+++..++..+.+++...+.+.  ......+. +
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  139 (291)
T COG0457          69 LLKLGRLEEALELLEKALELELLP-------NLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD--LAEALLALGA  139 (291)
T ss_pred             HHHcccHHHHHHHHHHHHhhhhcc-------chHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc--hHHHHHHHHH
Confidence            3445567777777776664  333       6677888899999999999999999999999888764  45555566 8


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-chhhhh
Q 026145          174 RLTMGNFSAALEDVREALELAP---NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS-IRRSKS  236 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~  236 (243)
                      +...++++.|...+.+++...|   .....+...+..+...+++++|+..+.+++...+. ....+.
T Consensus       140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  206 (291)
T COG0457         140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL  206 (291)
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH
Confidence            9999999999999999988777   45667777777788999999999999999999888 344433

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.94  E-value=0.00058  Score=50.69  Aligned_cols=104  Identities=23%  Similarity=0.222  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHH
Q 026145          128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELAPNY-TEAYICQG  205 (243)
Q Consensus       128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la  205 (243)
                      ..+...+|..++..+++++|+..++.++....+.. -.-+-.+++.+...+|.+++|+..++..-  ++.+ +.....+|
T Consensus        89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrG  166 (207)
T COG2976          89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRG  166 (207)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhh
Confidence            34566789999999999999999999997654432 23456788999999999999999998753  2333 23456789


Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCchh
Q 026145          206 DVFLAMDQYDAAEKSYSTCLQIDPSIRR  233 (243)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~p~~~~  233 (243)
                      .++...|+-++|...|.+++..+++.+.
T Consensus       167 Dill~kg~k~~Ar~ay~kAl~~~~s~~~  194 (207)
T COG2976         167 DILLAKGDKQEARAAYEKALESDASPAA  194 (207)
T ss_pred             hHHHHcCchHHHHHHHHHHHHccCChHH
Confidence            9999999999999999999999855443

>PLN03077 Protein ECB2; Provisional

Probab=97.91  E-value=0.00023  Score=66.13  Aligned_cols=132  Identities=9%  Similarity=0.019  Sum_probs=60.3

Q ss_pred             EEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHH
Q 026145           97 VGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLT  176 (243)
Q Consensus        97 ~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~  176 (243)
                      |...|+.++|.++|++....+..|      +...+..+-..+.+.|++++|..+|+...+..+-.+....|..+...+.+
T Consensus       564 ~~~~G~~~~A~~lf~~M~~~g~~P------d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r  637 (857)
T PLN03077        564 YVAHGKGSMAVELFNRMVESGVNP------DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR  637 (857)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCC------CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Confidence            445556666666666554332211      11223333344555555666665555554222111111345555555555


Q ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhh
Q 026145          177 MGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKS  236 (243)
Q Consensus       177 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  236 (243)
                      .|++++|.+.+++. ...|+ +..|..+-.++...++.+.+....+++++++|++...+.
T Consensus       638 ~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~  695 (857)
T PLN03077        638 AGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYI  695 (857)
T ss_pred             CCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH
Confidence            55555555555442 12332 333444433444444444444444444555554444443

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=3.2e-05  Score=61.61  Aligned_cols=98  Identities=23%  Similarity=0.168  Sum_probs=85.5

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      +|..|....++.+|...|...++...   .+...++..|.++|-+.+..|+|..|+..+.+++.++|.+.  .+++.-|.
T Consensus        87 eGN~~fK~Kryk~A~~~Yt~Glk~kc---~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~--Ka~~R~Ak  161 (390)
T KOG0551|consen   87 EGNEYFKEKRYKDAVESYTEGLKKKC---ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL--KAYIRGAK  161 (390)
T ss_pred             HhHHHHHhhhHHHHHHHHHHHHhhcC---CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh--hhhhhhhH
Confidence            46667777799999999999886543   33447788899999999999999999999999999999988  99999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCC
Q 026145          173 ARLTMGNFSAALEDVREALELAP  195 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p  195 (243)
                      |++.+.++.+|..+++..+.++.
T Consensus       162 c~~eLe~~~~a~nw~ee~~~~d~  184 (390)
T KOG0551|consen  162 CLLELERFAEAVNWCEEGLQIDD  184 (390)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhH
Confidence            99999999999999998877654

>PRK10941 hypothetical protein; Provisional

Probab=97.87  E-value=0.00015  Score=57.46  Aligned_cols=77  Identities=17%  Similarity=0.092  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145          127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG  205 (243)
Q Consensus       127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  205 (243)
                      ..+.+.++-..+.+.++++.|+...+..+.+.|+++  .-+..+|.+|.++|.+..|..+++..++..|+++.+-.-..
T Consensus       180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp--~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~  256 (269)
T PRK10941        180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPEDP--YEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA  256 (269)
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence            334455555566666777777777777777777665  55666677777777777777777777776666665544433

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.87  E-value=0.00073  Score=56.68  Aligned_cols=123  Identities=17%  Similarity=0.155  Sum_probs=100.8

Q ss_pred             CCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCH
Q 026145          101 GTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNF  180 (243)
Q Consensus       101 ~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~  180 (243)
                      .+.+.+.++++..+..-|   ..+..-+..|...|.-..++.+...|...+-.||..-|.+   ..+-..-..-.+++++
T Consensus       380 ed~ertr~vyq~~l~lIP---HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~---KlFk~YIelElqL~ef  453 (677)
T KOG1915|consen  380 EDVERTRQVYQACLDLIP---HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD---KLFKGYIELELQLREF  453 (677)
T ss_pred             hhHHHHHHHHHHHHhhcC---cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch---hHHHHHHHHHHHHhhH
Confidence            377888899998888776   3334566778888888888899999999999999998887   3555555666788899


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 026145          181 SAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP  229 (243)
Q Consensus       181 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  229 (243)
                      +.....|++-|+-.|.+-.+|...|..-..+|+.+.|...|.-|+....
T Consensus       454 DRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~  502 (677)
T KOG1915|consen  454 DRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA  502 (677)
T ss_pred             HHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence            9999999999999999999999999999999999999888888887654

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.86  E-value=0.00034  Score=62.52  Aligned_cols=123  Identities=15%  Similarity=0.017  Sum_probs=100.1

Q ss_pred             cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCC
Q 026145          100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN  179 (243)
Q Consensus       100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~  179 (243)
                      .+++.+|.....+.+...|       +...+....|..+.+.|+.++|...++..-...+++.  ..+..+-.||..+++
T Consensus        22 ~~qfkkal~~~~kllkk~P-------n~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~--~tLq~l~~~y~d~~~   92 (932)
T KOG2053|consen   22 SSQFKKALAKLGKLLKKHP-------NALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDD--LTLQFLQNVYRDLGK   92 (932)
T ss_pred             hHHHHHHHHHHHHHHHHCC-------CcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCch--HHHHHHHHHHHHHhh
Confidence            3478889988999998888       7777777889999999999999977777666667765  778888899999999


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 026145          180 FSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIR  232 (243)
Q Consensus       180 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  232 (243)
                      +++|...|++++..+|+ -+....+-.+|.+.+.|.+-.+.--+..+..|+++
T Consensus        93 ~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~  144 (932)
T KOG2053|consen   93 LDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRA  144 (932)
T ss_pred             hhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            99999999999999998 78888888888888888776555555555666654

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.86  E-value=2.8e-05  Score=40.90  Aligned_cols=30  Identities=33%  Similarity=0.469  Sum_probs=15.6

Q ss_pred             HHHhHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 026145          166 LYKDRCLARLTMGNFSAALEDVREALELAP  195 (243)
Q Consensus       166 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p  195 (243)
                      +|+.+|.++..+|++++|+..|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            445555555555555555555555555544

...

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.86  E-value=0.00046  Score=55.43  Aligned_cols=101  Identities=11%  Similarity=0.071  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 026145          130 ALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLT-MGNFSAALEDVREALELAPNYTEAYICQGDVF  208 (243)
Q Consensus       130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  208 (243)
                      +|....+...+.+..+.|...|.+|++..+...  .+|...|.+-+. .++.+.|...|+.+++..|.+...|......+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~--~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTY--HVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-T--HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            455566666777779999999999996655544  889999999777 56777799999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHhccCCCch
Q 026145          209 LAMDQYDAAEKSYSTCLQIDPSIR  232 (243)
Q Consensus       209 ~~~g~~~~A~~~~~~al~~~p~~~  232 (243)
                      ...|+.+.|...|++++..-|...
T Consensus        81 ~~~~d~~~aR~lfer~i~~l~~~~  104 (280)
T PF05843_consen   81 IKLNDINNARALFERAISSLPKEK  104 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCTSSCHH
T ss_pred             HHhCcHHHHHHHHHHHHHhcCchh
Confidence            999999999999999999877665

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.85  E-value=0.00057  Score=63.87  Aligned_cols=131  Identities=15%  Similarity=0.076  Sum_probs=96.8

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHhHH
Q 026145           96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKDRC  171 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~la  171 (243)
                      .+...|+++++...++.++...+  .........++..+|..+...|++++|...+.+++.......    ...++.++|
T Consensus       461 ~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la  538 (903)
T PRK04841        461 VAINDGDPEEAERLAELALAELP--LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS  538 (903)
T ss_pred             HHHhCCCHHHHHHHHHHHHhcCC--CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence            34457799999999998876432  111222345667888899999999999999999987643221    224567789


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145          172 LARLTMGNFSAALEDVREALELAPN--------YTEAYICQGDVFLAMDQYDAAEKSYSTCLQID  228 (243)
Q Consensus       172 ~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  228 (243)
                      .++...|++++|...+++++.....        ....+..+|.++...|++++|...+.+++.+.
T Consensus       539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  603 (903)
T PRK04841        539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL  603 (903)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence            9999999999999999998875221        22345677888889999999999999887763

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.82  E-value=5.5e-05  Score=44.08  Aligned_cols=36  Identities=17%  Similarity=0.262  Sum_probs=16.8

Q ss_pred             HHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 026145          167 YKDRCLARLTMGNFSAALEDVREALELAPNYTEAYI  202 (243)
Q Consensus       167 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  202 (243)
                      ++.+|..++++|+|++|..+.+.+|++.|++..+..
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~   39 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS   39 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            344455555555555555555555555555544433

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.80  E-value=5.3e-05  Score=39.79  Aligned_cols=32  Identities=25%  Similarity=0.624  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 026145          199 EAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS  230 (243)
Q Consensus       199 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  230 (243)
                      .+|+.+|.+|..+|++++|...|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            35666666666666666666666666666663

...

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.78  E-value=3.8e-05  Score=65.56  Aligned_cols=106  Identities=15%  Similarity=0.147  Sum_probs=93.4

Q ss_pred             HHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 026145          135 AEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQY  214 (243)
Q Consensus       135 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  214 (243)
                      |....-.|+...|+..+..|+...|... .....+++.++.+-+-..+|-..+.+++.++...+-.++.+|.++..+.+.
T Consensus       614 glywr~~gn~~~a~~cl~~a~~~~p~~~-~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i  692 (886)
T KOG4507|consen  614 GLYWRAVGNSTFAIACLQRALNLAPLQQ-DVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI  692 (886)
T ss_pred             cceeeecCCcHHHHHHHHHHhccChhhh-cccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence            3334458999999999999999999753 245778999999999999999999999999988888999999999999999


Q ss_pred             HHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          215 DAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       215 ~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      +.|++.|++|+..+|+++.....+.+|
T Consensus       693 ~~a~~~~~~a~~~~~~~~~~~~~l~~i  719 (886)
T KOG4507|consen  693 SGALEAFRQALKLTTKCPECENSLKLI  719 (886)
T ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence            999999999999999999988777665

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.77  E-value=0.00066  Score=54.56  Aligned_cols=118  Identities=13%  Similarity=0.002  Sum_probs=86.6

Q ss_pred             cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc-CCCCch-HHHHHhHHHHHHHc
Q 026145          100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIEL-KPFGGI-HVLYKDRCLARLTM  177 (243)
Q Consensus       100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~-~~~~~~la~~~~~~  177 (243)
                      .|+..+|-...++++...|       .+..++..--..++..|+...-...+++.+.. +|+-+. ..+.--++.++...
T Consensus       116 ~g~~h~a~~~wdklL~d~P-------tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~  188 (491)
T KOG2610|consen  116 RGKHHEAAIEWDKLLDDYP-------TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC  188 (491)
T ss_pred             cccccHHHHHHHHHHHhCc-------hhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence            3455556566667776666       55666666666777788888888888887766 555431 12222347777889


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026145          178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTC  224 (243)
Q Consensus       178 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  224 (243)
                      |-|++|.+..+++++++|.+..+...++-++...+++.++.++..+-
T Consensus       189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t  235 (491)
T KOG2610|consen  189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT  235 (491)
T ss_pred             ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence            99999999999999999999888888898999889988888877653

>PF06999 Suc_Fer-like: Sucrase/ferredoxin-like; InterPro: IPR009737 This family contains a number of bacterial and eukaryotic proteins approximately 400 residues long that resemble ferredoxin and appear to have sucrolytic activity []

Probab=97.74  E-value=0.00029  Score=54.87  Aligned_cols=75  Identities=21%  Similarity=0.320  Sum_probs=60.2

Q ss_pred             CCcEEEEccCC----ccCccC---HHHHHHHHHhcCCCcEEEEeeCCCCCCCCCCeEEEe----cCCeEEEecCCHhHHH
Q 026145           39 ELKELRVCTNR----TCRRQG---SMQILETLSSLAPPEVAVKSCGCLGRCGAGPNLVAL----PDGVVVGHCGTPARAS  107 (243)
Q Consensus        39 ~~~~i~vC~~~----~c~~~G---~~~~~~~l~~~g~~~v~v~~~gc~g~c~~~p~~~~~----~~g~~~~~~~~~~~a~  107 (243)
                      .+..|+||+..    +|...|   ..++-+.+.+.++....|-.+..+|.+..++++++|    +.|.||..+ +++++.
T Consensus       131 ~~~~iLVCtHg~RD~rCg~~Gp~l~~~l~~~~~~~~l~~~~V~~iSHiGGHkfAgNvIiy~~~~p~g~wyGrv-~p~~v~  209 (230)
T PF06999_consen  131 DKPLILVCTHGKRDKRCGILGPPLARELEKELRERGLSRDRVWEISHIGGHKFAGNVIIYSKPKPDGIWYGRV-TPEDVE  209 (230)
T ss_pred             CCCEEEEcCCCCcCCchhcccHHHHHHHHHHhhhcCCccceEEEecccccceecCeEEEEecCCCcEEEEEee-CHHHHH
Confidence            45789999988    777775   334444444466654558899999999999999999    999999999 999999


Q ss_pred             HHHHHHh
Q 026145          108 EILMVLC  114 (243)
Q Consensus       108 ~~l~~~l  114 (243)
                      .+++..+
T Consensus       210 ~iv~~t~  216 (230)
T PF06999_consen  210 GIVDATI  216 (230)
T ss_pred             HHHHHHH
Confidence            9999833

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.74  E-value=0.00081  Score=62.91  Aligned_cols=105  Identities=15%  Similarity=0.020  Sum_probs=75.5

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHH
Q 026145          133 KRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPN--YTEAYICQGDVFLA  210 (243)
Q Consensus       133 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~  210 (243)
                      .+..+|.+.+.+++|.++|+..++..-+..  ..|..++..+++..+-++|-..+.+|++.-|.  +.+.....|++-++
T Consensus      1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q~~--~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQTR--KVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHhcchh--hHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence            344556666777777777777776666543  67777777777777777777777777777776  56666777777777


Q ss_pred             cCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145          211 MDQYDAAEKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       211 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a  239 (243)
                      .|+.+.+...|.-.+.-+|.-.++|..+.
T Consensus      1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYi 1641 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYI 1641 (1710)
T ss_pred             cCCchhhHHHHHHHHhhCccchhHHHHHH
Confidence            77777777777777777777777776554

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.73  E-value=0.00011  Score=61.47  Aligned_cols=116  Identities=15%  Similarity=0.095  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHh-hccCC------CCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHh-----
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQA-IELKP------FGGIHVLYKDRCLARLTMGNFSAALEDVREALEL-----  193 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-l~~~p------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----  193 (243)
                      ..+.+++...+..+-.|+|..|.+.+... +...|      +-....+|+|+|.++++++.|..+..+|.+|++.     
T Consensus       238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL  317 (696)
T KOG2471|consen  238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL  317 (696)
T ss_pred             CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence            45667888899999999999999887653 22222      2112357899999999999999999999999961     


Q ss_pred             ----CC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          194 ----AP---------NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       194 ----~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                          .|         ..-+..++.|..|...|+.-.|.+.|.++....-.+|..|..++.+
T Consensus       318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEc  378 (696)
T KOG2471|consen  318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAEC  378 (696)
T ss_pred             hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence                12         2356899999999999999999999999999999999999888764

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.73  E-value=2.9e-05  Score=62.12  Aligned_cols=89  Identities=25%  Similarity=0.158  Sum_probs=81.5

Q ss_pred             EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc
Q 026145           98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM  177 (243)
Q Consensus        98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~  177 (243)
                      ...|.+++|++.+..++..+|       ..+..+-.++.++.+.+.+..|+..|..++.++|+..  .-|-.++.+...+
T Consensus       125 ln~G~~~~ai~~~t~ai~lnp-------~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa--~~ykfrg~A~rll  195 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAIELNP-------PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA--KGYKFRGYAERLL  195 (377)
T ss_pred             hcCcchhhhhcccccccccCC-------chhhhcccccceeeeccCCchhhhhhhhhhccCcccc--cccchhhHHHHHh
Confidence            455678999999999999998       7888899999999999999999999999999999976  8889999999999


Q ss_pred             CCHHHHHHHHHHHHHhCC
Q 026145          178 GNFSAALEDVREALELAP  195 (243)
Q Consensus       178 ~~~~~A~~~~~~al~~~p  195 (243)
                      |+|++|..++..+.+++-
T Consensus       196 g~~e~aa~dl~~a~kld~  213 (377)
T KOG1308|consen  196 GNWEEAAHDLALACKLDY  213 (377)
T ss_pred             hchHHHHHHHHHHHhccc
Confidence            999999999999998864

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.71  E-value=0.00078  Score=62.97  Aligned_cols=133  Identities=17%  Similarity=0.108  Sum_probs=100.2

Q ss_pred             eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCC-----c-hHHHHH
Q 026145           95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFG-----G-IHVLYK  168 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~-~~~~~~  168 (243)
                      ..+...|+++.|...+.+++.... ...........+..+|.++...|++++|...+.+++......     . ....+.
T Consensus       499 ~~~~~~G~~~~A~~~~~~al~~~~-~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  577 (903)
T PRK04841        499 EVHHCKGELARALAMMQQTEQMAR-QHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR  577 (903)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHh-hhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence            344567899999999988775432 111222345577888999999999999999999998763211     1 123456


Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145          169 DRCLARLTMGNFSAALEDVREALELAPN-----YTEAYICQGDVFLAMDQYDAAEKSYSTCLQID  228 (243)
Q Consensus       169 ~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  228 (243)
                      .+|.++...|++++|...+++++.....     ...++..+|.++...|++++|...+.++..+.
T Consensus       578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~  642 (903)
T PRK04841        578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLL  642 (903)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            7899999999999999999999876321     34567778999999999999999999997753

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=0.00051  Score=52.79  Aligned_cols=109  Identities=18%  Similarity=0.127  Sum_probs=86.5

Q ss_pred             ecCCeEEEecCCHhHHHHHHHHHh--------cCCCCCcch---hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCC
Q 026145           91 LPDGVVVGHCGTPARASEILMVLC--------GIKSDHDAA---KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKP  159 (243)
Q Consensus        91 ~~~g~~~~~~~~~~~a~~~l~~~l--------~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p  159 (243)
                      ...|.-++..|++.+|..-|..++        +..|...+.   .......+.+...++...|+|-++++.....+..+|
T Consensus       182 ~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~  261 (329)
T KOG0545|consen  182 HQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP  261 (329)
T ss_pred             HHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC
Confidence            446777778888888888777654        222211111   223445677889999999999999999999999999


Q ss_pred             CCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 026145          160 FGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAY  201 (243)
Q Consensus       160 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  201 (243)
                      .+.  .+|+.+|.++...=+.++|..++.++|+++|.-..+.
T Consensus       262 ~nv--KA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV  301 (329)
T KOG0545|consen  262 GNV--KAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV  301 (329)
T ss_pred             chH--HHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence            987  9999999999999999999999999999999765443

>PRK10941 hypothetical protein; Provisional

Probab=97.70  E-value=0.00096  Score=52.95  Aligned_cols=79  Identities=16%  Similarity=0.120  Sum_probs=72.7

Q ss_pred             hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          163 IHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       163 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      +.....++=.++.+.++++.|+.+.+..+.+.|+++.-+.-+|.+|.++|.+..|...++..++..|+++.+.....++
T Consensus       180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            4567788889999999999999999999999999999999999999999999999999999999999999987766554

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.69  E-value=0.00027  Score=55.89  Aligned_cols=88  Identities=16%  Similarity=0.127  Sum_probs=78.8

Q ss_pred             HHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 026145          137 AEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDA  216 (243)
Q Consensus       137 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  216 (243)
                      .+.+..+|.+|++....-.+.+|.+.  ..+..+|.||+...+|..|..+|++.-.+.|......+.-+..+++.+.+.+
T Consensus        19 ~lI~d~ry~DaI~~l~s~~Er~p~~r--AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~AD   96 (459)
T KOG4340|consen   19 RLIRDARYADAIQLLGSELERSPRSR--AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYAD   96 (459)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHH
Confidence            34778899999999999999999876  7899999999999999999999999999999999988889999999999999


Q ss_pred             HHHHHHHHhc
Q 026145          217 AEKSYSTCLQ  226 (243)
Q Consensus       217 A~~~~~~al~  226 (243)
                      |+........
T Consensus        97 ALrV~~~~~D  106 (459)
T KOG4340|consen   97 ALRVAFLLLD  106 (459)
T ss_pred             HHHHHHHhcC
Confidence            9887765544

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.68  E-value=0.0012  Score=50.49  Aligned_cols=140  Identities=14%  Similarity=0.099  Sum_probs=98.8

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHhhccCCCCc----hHHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEK-ANFSEADGFLSQAIELKPFGG----IHVLYK  168 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~~----~~~~~~  168 (243)
                      +..|... ++++|...++.++.... ....=..-+.....+|.+|-.. .++++|+.+|+++-+....+.    -...+.
T Consensus        81 ~~cykk~-~~~eAv~cL~~aieIyt-~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~l  158 (288)
T KOG1586|consen   81 ANCYKKV-DPEEAVNCLEKAIEIYT-DMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLL  158 (288)
T ss_pred             HHHhhcc-ChHHHHHHHHHHHHHHH-hhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHH
Confidence            3455666 89888888887764332 0000112344556788888765 899999999999987754331    113445


Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhh
Q 026145          169 DRCLARLTMGNFSAALEDVREALELAPNYT-------EAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK  235 (243)
Q Consensus       169 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  235 (243)
                      .-+..-..+++|.+|+..|+++....-++.       ..++.-|.|+....+.-.+...+++...++|.....+
T Consensus       159 KvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR  232 (288)
T KOG1586|consen  159 KVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR  232 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence            556666788999999999999887554442       3466778888888999899999999999999876554

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.66  E-value=9.6e-05  Score=38.39  Aligned_cols=31  Identities=16%  Similarity=0.312  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 026145          200 AYICQGDVFLAMDQYDAAEKSYSTCLQIDPS  230 (243)
Q Consensus       200 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  230 (243)
                      +++++|.++...|++++|+..|++++...|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4455555555555555555555555555554

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.65  E-value=0.00067  Score=63.42  Aligned_cols=131  Identities=12%  Similarity=0.103  Sum_probs=114.5

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCC--CchHHHHHhHHHH
Q 026145           96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPF--GGIHVLYKDRCLA  173 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~la~~  173 (243)
                      .|...+.+++|.++++..++...       +....|...|..++++.+-+.|...+.+|+..-|.  +.  .+....|++
T Consensus      1539 iy~k~ek~~~A~ell~~m~KKF~-------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv--~~IskfAqL 1609 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKFG-------QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV--EFISKFAQL 1609 (1710)
T ss_pred             HHHHhhcchhHHHHHHHHHHHhc-------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH--HHHHHHHHH
Confidence            45566688999999998887664       67889999999999999999999999999999987  55  777788999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhh
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK  235 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  235 (243)
                      -++.|+.+.+...|+-.+..+|...+.|.-....-.+.|+.+-....|++++.+.=.-..++
T Consensus      1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred             HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhH
Confidence            99999999999999999999999999999999999999999999999999998764444443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.64  E-value=0.00015  Score=58.62  Aligned_cols=135  Identities=17%  Similarity=0.125  Sum_probs=106.3

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc--------hH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG--------IH  164 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--------~~  164 (243)
                      -+..+...+.++++.+.|+.+++... ...+.....+.+..+|..+....|+++|+.+..+|.++.....        ..
T Consensus       128 ~~~Ahlgls~fq~~Lesfe~A~~~A~-~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~  206 (518)
T KOG1941|consen  128 MGNAHLGLSVFQKALESFEKALRYAH-NNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA  206 (518)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhh-ccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence            35556667789999999999886553 3344445667888999999999999999999999987743211        13


Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145          165 VLYKDRCLARLTMGNFSAALEDVREALELA------PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID  228 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  228 (243)
                      .+++.++..+..+|+..+|.++.+++.++.      |.......-+|.+|...|+.+.|..-|++|....
T Consensus       207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence            567788999999999999999999988764      3345667789999999999999999998887643

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.64  E-value=0.0009  Score=52.07  Aligned_cols=115  Identities=10%  Similarity=0.122  Sum_probs=94.4

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCC-CCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCC------Cc
Q 026145          125 NLEALALRKRAEAEFEKANFSEADGFLSQAIELKP-FGGIHVLYKDRCLARLTMGNFSAALEDVREALELAP------NY  197 (243)
Q Consensus       125 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~  197 (243)
                      .......+.+..++...++|.-.+..+++.++.+| .++  .....+|.+.++.|+.+.|..+++++-+.+.      ..
T Consensus       174 KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p--~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~  251 (366)
T KOG2796|consen  174 KRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEP--QLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGK  251 (366)
T ss_pred             HHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccH--HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchh
Confidence            34455667778888899999999999999999984 544  7888899999999999999999996654332      23


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          198 TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       198 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      .-...+.+.+|...+++.+|...+.+++..||.++.+-...+-|
T Consensus       252 ~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc  295 (366)
T KOG2796|consen  252 IMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC  295 (366)
T ss_pred             HHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence            44677788888999999999999999999999999887766543

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.59  E-value=0.00061  Score=60.95  Aligned_cols=93  Identities=17%  Similarity=0.149  Sum_probs=84.0

Q ss_pred             HHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 026145          137 AEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDA  216 (243)
Q Consensus       137 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  216 (243)
                      .....+++.+|+....+.++..|+..  .+...-|..+.++|+.++|...++..-...+++...+..+-.+|..++++++
T Consensus        18 d~ld~~qfkkal~~~~kllkk~Pn~~--~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~   95 (932)
T KOG2053|consen   18 DLLDSSQFKKALAKLGKLLKKHPNAL--YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE   95 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence            44678899999999999999999976  7777789999999999999988887777778888899999999999999999


Q ss_pred             HHHHHHHHhccCCCc
Q 026145          217 AEKSYSTCLQIDPSI  231 (243)
Q Consensus       217 A~~~~~~al~~~p~~  231 (243)
                      |...|++++..+|+.
T Consensus        96 ~~~~Ye~~~~~~P~e  110 (932)
T KOG2053|consen   96 AVHLYERANQKYPSE  110 (932)
T ss_pred             HHHHHHHHHhhCCcH
Confidence            999999999999983

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.58  E-value=0.0016  Score=56.00  Aligned_cols=116  Identities=21%  Similarity=0.158  Sum_probs=96.1

Q ss_pred             CCCCeEEEec-CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCC
Q 026145           83 GAGPNLVALP-DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFG  161 (243)
Q Consensus        83 ~~~p~~~~~~-~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  161 (243)
                      ..+|..++.. .|.+...+|++..|.+.+..++...|.      ..--.+.++|+++.+.+-..+|-.++.+++.+....
T Consensus       602 ~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~------~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~se  675 (886)
T KOG4507|consen  602 PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPL------QQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSE  675 (886)
T ss_pred             CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChh------hhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccC
Confidence            3577766544 467777889999999999999877761      233357789999999999999999999999998776


Q ss_pred             chHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 026145          162 GIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGD  206 (243)
Q Consensus       162 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  206 (243)
                      +  -.++.+|.+++.+.+.+.|++.++.|++.+|+++..-..+-.
T Consensus       676 p--l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~  718 (886)
T KOG4507|consen  676 P--LTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKL  718 (886)
T ss_pred             c--hHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence            6  788889999999999999999999999999998876554443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.58  E-value=0.00036  Score=59.15  Aligned_cols=103  Identities=19%  Similarity=0.138  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHH
Q 026145          127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMG---NFSAALEDVREALELAPNYTEAYIC  203 (243)
Q Consensus       127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~  203 (243)
                      .+...+.-|+..+....+..|+..|.+++...|...  ..+.+++.++++.+   +--.|+.+...+++++|....+++.
T Consensus       373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~--~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~  450 (758)
T KOG1310|consen  373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAI--YLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFR  450 (758)
T ss_pred             HHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchh--HHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHH
Confidence            344455566666677788999999999999999976  88999998888754   5567888999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145          204 QGDVFLAMDQYDAAEKSYSTCLQIDPSI  231 (243)
Q Consensus       204 la~~~~~~g~~~~A~~~~~~al~~~p~~  231 (243)
                      |+.++..++++.+|++....+....|.+
T Consensus       451 la~aL~el~r~~eal~~~~alq~~~Ptd  478 (758)
T KOG1310|consen  451 LARALNELTRYLEALSCHWALQMSFPTD  478 (758)
T ss_pred             HHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence            9999999999999999888777777743

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.57  E-value=0.00041  Score=55.10  Aligned_cols=80  Identities=19%  Similarity=0.184  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG  205 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  205 (243)
                      ..+..-...|....+.|+.++|..+|+.|+.++|+++  +++..+|...-..++.-+|-.+|-+|+.++|.+.+++.+++
T Consensus       114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p--~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~  191 (472)
T KOG3824|consen  114 KEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNP--QILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA  191 (472)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCH--HHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence            4455555667777889999999999999999999988  99999999999999999999999999999999999998876


Q ss_pred             HH
Q 026145          206 DV  207 (243)
Q Consensus       206 ~~  207 (243)
                      ..
T Consensus       192 RT  193 (472)
T KOG3824|consen  192 RT  193 (472)
T ss_pred             cc
Confidence            43

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.56  E-value=0.0002  Score=37.10  Aligned_cols=31  Identities=13%  Similarity=0.267  Sum_probs=18.8

Q ss_pred             HHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 026145          166 LYKDRCLARLTMGNFSAALEDVREALELAPN  196 (243)
Q Consensus       166 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  196 (243)
                      +++.+|.++..+|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4555666666666666666666666666654

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.54  E-value=0.0044  Score=53.49  Aligned_cols=141  Identities=13%  Similarity=0.134  Sum_probs=100.6

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHH-HH----HhcCHHHHHHHHHHhhccCCCCchHHHHHhH
Q 026145           96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEA-EF----EKANFSEADGFLSQAIELKPFGGIHVLYKDR  170 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~-~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l  170 (243)
                      +.+..|+-+...+.+..+..... ....-....-..+..... +.    ...+.+.|.+.+.......|+..  -..+..
T Consensus       197 ~vGF~gdR~~GL~~L~~~~~~~~-i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~--lfl~~~  273 (468)
T PF10300_consen  197 FVGFSGDRELGLRLLWEASKSEN-IRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSA--LFLFFE  273 (468)
T ss_pred             hcCcCCcHHHHHHHHHHHhccCC-cchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcH--HHHHHH
Confidence            34556789999999988765331 111111111111111111 11    24577889999999999999976  778888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145          171 CLARLTMGNFSAALEDVREALELAPNY----TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       171 a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  239 (243)
                      |.++...|+.++|++.+++++......    .-.++.++.++..+++|++|...+.+..+.+.-+...+.+.+
T Consensus       274 gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~  346 (468)
T PF10300_consen  274 GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA  346 (468)
T ss_pred             HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            999999999999999999988544333    346889999999999999999999999998766655555443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.53  E-value=0.0013  Score=55.48  Aligned_cols=93  Identities=10%  Similarity=0.020  Sum_probs=81.4

Q ss_pred             HHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHH
Q 026145          145 SEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQ-YDAAEKSYST  223 (243)
Q Consensus       145 ~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~  223 (243)
                      ..-+..|+.|+...+.|.  ..|......-.+.+.+.+--..|.+++..+|++++.|..-|...+..+. .+.|.+.+.+
T Consensus        88 ~rIv~lyr~at~rf~~D~--~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflr  165 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDV--KLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLR  165 (568)
T ss_pred             HHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence            455678999999999887  8888876666677779999999999999999999999999999888886 9999999999


Q ss_pred             HhccCCCchhhhhhhh
Q 026145          224 CLQIDPSIRRSKSFKV  239 (243)
Q Consensus       224 al~~~p~~~~~~~~~a  239 (243)
                      +++.+|+++..|.-+-
T Consensus       166 gLR~npdsp~Lw~eyf  181 (568)
T KOG2396|consen  166 GLRFNPDSPKLWKEYF  181 (568)
T ss_pred             HhhcCCCChHHHHHHH
Confidence            9999999999986543

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.51  E-value=9.1e-05  Score=39.58  Aligned_cols=25  Identities=20%  Similarity=0.368  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHh
Q 026145          201 YICQGDVFLAMDQYDAAEKSYSTCL  225 (243)
Q Consensus       201 ~~~la~~~~~~g~~~~A~~~~~~al  225 (243)
                      +.++|.+|..+|++++|+++|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4445555555555555555555533

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.50  E-value=0.0049  Score=42.00  Aligned_cols=100  Identities=16%  Similarity=0.199  Sum_probs=73.2

Q ss_pred             HHHHHHH--HHHHHHhcCHHHHHHHHHHhhccCC----CCc------hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHh--
Q 026145          128 ALALRKR--AEAEFEKANFSEADGFLSQAIELKP----FGG------IHVLYKDRCLARLTMGNFSAALEDVREALEL--  193 (243)
Q Consensus       128 ~~~~~~~--a~~~~~~~~~~~A~~~~~~al~~~p----~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--  193 (243)
                      +.+|..+  |.-.+..|-|++|...+.++++..-    ...      .+-.+..++..+..+|+|++++...+++|..  
T Consensus         7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN   86 (144)
T PF12968_consen    7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN   86 (144)
T ss_dssp             HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence            3444444  4456678999999999999997642    211      1345667888999999999999999988854  


Q ss_pred             -----CCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145          194 -----APN----YTEAYICQGDVFLAMDQYDAAEKSYSTCLQI  227 (243)
Q Consensus       194 -----~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  227 (243)
                           +.+    +..+.++++.++..+|+.++|+..|+.+-+.
T Consensus        87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence                 333    3557789999999999999999999988653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.46  E-value=0.0049  Score=44.56  Aligned_cols=88  Identities=18%  Similarity=0.106  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG  205 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  205 (243)
                      .....+.....+-...++.+++...+.-.--+.|+.+  .+-..-|..+...|+|.+|+..++.+....|..+.+.-.++
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~--e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA   85 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFP--ELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA   85 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCch--HHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence            4455677778888888999999999999999999977  88888999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHH
Q 026145          206 DVFLAMDQYD  215 (243)
Q Consensus       206 ~~~~~~g~~~  215 (243)
                      .|++.+|+.+
T Consensus        86 ~CL~~~~D~~   95 (160)
T PF09613_consen   86 LCLYALGDPS   95 (160)
T ss_pred             HHHHHcCChH
Confidence            9999999753

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.45  E-value=0.00067  Score=53.89  Aligned_cols=73  Identities=19%  Similarity=0.224  Sum_probs=66.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          169 DRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       169 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      +.+.-..+.|+.++|...|+.|+++.|.+++++..+|......++.-+|-.+|-+|+.++|.+.++..++++-
T Consensus       121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            3455556889999999999999999999999999999999999999999999999999999999998887763

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.43  E-value=0.0059  Score=51.77  Aligned_cols=117  Identities=18%  Similarity=0.148  Sum_probs=82.5

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCC---------------------
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPF---------------------  160 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---------------------  160 (243)
                      ++..-++.-.+++..+|       +-+.+|..+|..  ......+|.++|+++++....                     
T Consensus       183 np~aRIkaA~eALei~p-------dCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~R  253 (539)
T PF04184_consen  183 NPQARIKAAKEALEINP-------DCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRR  253 (539)
T ss_pred             CHHHHHHHHHHHHHhhh-------hhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcc
Confidence            44555555555555555       555555555542  123456777777777654210                     


Q ss_pred             --CchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145          161 --GGIHVLYKDRCLARLTMGNFSAALEDVREALELAPN--YTEAYICQGDVFLAMDQYDAAEKSYSTCLQI  227 (243)
Q Consensus       161 --~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  227 (243)
                        ++...+...+|+|..++|+.++|++.++..++.+|.  +..++.++-.++..++.|.++...+.+.-++
T Consensus       254 dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi  324 (539)
T PF04184_consen  254 DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI  324 (539)
T ss_pred             ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence              011234567899999999999999999999998875  4568999999999999999999999887544

The molecular function of this protein is uncertain.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.37  E-value=0.0053  Score=52.02  Aligned_cols=113  Identities=11%  Similarity=0.031  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHH
Q 026145          128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALEL-APNYTEAYICQGD  206 (243)
Q Consensus       128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~  206 (243)
                      ..+-+.+|++..+.|+.++|++.+...++..|......+..++..+++.++.|.++...+.+-=.+ -|.++...+..|.
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL  338 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL  338 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence            344567899999999999999999999988876334478999999999999999999998875433 2556665555554


Q ss_pred             HHHH-cCC---------------HHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          207 VFLA-MDQ---------------YDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       207 ~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      +-.+ .++               -..|++.+.+|++.||.-+....-.+.
T Consensus       339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~  388 (539)
T PF04184_consen  339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKS  388 (539)
T ss_pred             HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCC
Confidence            3322 221               234778999999999998876554443

The molecular function of this protein is uncertain.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.35  E-value=0.011  Score=49.02  Aligned_cols=135  Identities=11%  Similarity=0.007  Sum_probs=93.8

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHH---hcCHHHHHHHHHHhhcc-CCCCchHHHHHhHH
Q 026145           96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFE---KANFSEADGFLSQAIEL-KPFGGIHVLYKDRC  171 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~-~p~~~~~~~~~~la  171 (243)
                      .|....+++..+++++..-.... .  .-.......+..|.++.+   .|+.++|+..+..++.. .+.++  +++..+|
T Consensus       150 SyRdiqdydamI~Lve~l~~~p~-~--~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~--d~~gL~G  224 (374)
T PF13281_consen  150 SYRDIQDYDAMIKLVETLEALPT-C--DVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP--DTLGLLG  224 (374)
T ss_pred             HhhhhhhHHHHHHHHHHhhccCc-c--chhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh--HHHHHHH
Confidence            46667799999999887654421 1  122445556677777777   89999999999985544 44544  8888888


Q ss_pred             HHHHH---------cCCHHHHHHHHHHHHHhCCCc---------------------------------------------
Q 026145          172 LARLT---------MGNFSAALEDVREALELAPNY---------------------------------------------  197 (243)
Q Consensus       172 ~~~~~---------~~~~~~A~~~~~~al~~~p~~---------------------------------------------  197 (243)
                      .+|-.         ....++|+.+|.++.+++|+.                                             
T Consensus       225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d  304 (374)
T PF13281_consen  225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD  304 (374)
T ss_pred             HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence            87753         224788999999999887632                                             


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhh
Q 026145          198 TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK  235 (243)
Q Consensus       198 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  235 (243)
                      .+.+-.++.+..-.|++++|++++++++++.|..-...
T Consensus       305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~  342 (374)
T PF13281_consen  305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELE  342 (374)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHH
Confidence            12233455566678889999999999998877654433

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.35  E-value=0.0021  Score=37.43  Aligned_cols=42  Identities=19%  Similarity=0.324  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          199 EAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       199 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      +.++.+|..++++|+|++|......+++++|++.++..+...
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~   43 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL   43 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            356777888888888888888888888888888877766543

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.34  E-value=0.0026  Score=45.70  Aligned_cols=63  Identities=27%  Similarity=0.279  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHH
Q 026145          128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALE  192 (243)
Q Consensus       128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  192 (243)
                      ..++..++..+...|++++|+..+.+++..+|-+-  .+|..+-.++..+|+..+|+..|++..+
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E--~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDE--EAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H--HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            44566778888899999999999999999999976  8999999999999999999999998754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.30  E-value=0.0043  Score=43.26  Aligned_cols=72  Identities=11%  Similarity=0.150  Sum_probs=34.7

Q ss_pred             HHHhHHHHHHHcC---CHHHHHHHHHHHHH-hCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhh
Q 026145          166 LYKDRCLARLTMG---NFSAALEDVREALE-LAPN-YTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSF  237 (243)
Q Consensus       166 ~~~~la~~~~~~~---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  237 (243)
                      ..++++.++.+..   +..+.+..++..++ -.|. ..+..+.++..++++++|+.++.+.+..++.+|+++++..+
T Consensus        34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            3444444444333   23344555555553 2222 13344555555555555555555555555555555555443

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.29  E-value=0.0082  Score=41.92  Aligned_cols=83  Identities=16%  Similarity=0.083  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHHhc---CHHHHHHHHHHhhc-cCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 026145          126 LEALALRKRAEAEFEKA---NFSEADGFLSQAIE-LKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAY  201 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~-~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  201 (243)
                      ...+..+++|+.+.+..   +..+.+..++..++ ..|+. ..+..+.++..++++++|+.++.+.+..++..|+|..+.
T Consensus        30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~-rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~  108 (149)
T KOG3364|consen   30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPER-RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL  108 (149)
T ss_pred             chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCccc-chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            45667888999988754   56788999999996 55554 357778899999999999999999999999999998877


Q ss_pred             HHHHHHHH
Q 026145          202 ICQGDVFL  209 (243)
Q Consensus       202 ~~la~~~~  209 (243)
                      ...-.+.-
T Consensus       109 ~Lk~~ied  116 (149)
T KOG3364|consen  109 ELKETIED  116 (149)
T ss_pred             HHHHHHHH
Confidence            65544443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.28  E-value=0.0075  Score=50.87  Aligned_cols=104  Identities=12%  Similarity=0.089  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG  205 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  205 (243)
                      .+...|...|.--..++++..|...|++||..+..+.  ..|...+.+-++.+....|...+++|+.+-|.-...|+..-
T Consensus        71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~i--tLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~  148 (677)
T KOG1915|consen   71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNI--TLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYI  148 (677)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccc--hHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHH
Confidence            5566788888888889999999999999999998876  89999999999999999999999999999998888999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145          206 DVFLAMDQYDAAEKSYSTCLQIDPSI  231 (243)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~p~~  231 (243)
                      .+-..+|+..-|.+.|.+-+...|+.
T Consensus       149 ymEE~LgNi~gaRqiferW~~w~P~e  174 (677)
T KOG1915|consen  149 YMEEMLGNIAGARQIFERWMEWEPDE  174 (677)
T ss_pred             HHHHHhcccHHHHHHHHHHHcCCCcH
Confidence            89999999999999999999999964

>smart00028 TPR Tetratricopeptide repeats

Probab=97.27  E-value=0.00058  Score=34.49  Aligned_cols=30  Identities=37%  Similarity=0.474  Sum_probs=15.2

Q ss_pred             HHHhHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 026145          166 LYKDRCLARLTMGNFSAALEDVREALELAP  195 (243)
Q Consensus       166 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p  195 (243)
                      ++..+|.++..++++++|+..++++++++|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            344455555555555555555555554444

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.26  E-value=0.00072  Score=36.02  Aligned_cols=25  Identities=20%  Similarity=0.240  Sum_probs=12.5

Q ss_pred             HHhHHHHHHHcCCHHHHHHHHHHHH
Q 026145          167 YKDRCLARLTMGNFSAALEDVREAL  191 (243)
Q Consensus       167 ~~~la~~~~~~~~~~~A~~~~~~al  191 (243)
                      |.++|.+|..+|+|++|+++|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4445555555555555555555533

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.24  E-value=0.00061  Score=51.84  Aligned_cols=58  Identities=28%  Similarity=0.234  Sum_probs=40.9

Q ss_pred             HHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 026145          138 EFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNY  197 (243)
Q Consensus       138 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  197 (243)
                      ..+.++.+.|.+.|.+++++.|+..  ..|+.+|....+.|+++.|...|++.++++|.+
T Consensus         5 ~~~~~D~~aaaely~qal~lap~w~--~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           5 LAESGDAEAAAELYNQALELAPEWA--AGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcCchhh--hhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            4456677777777777777777755  667777777777777777777777777777755

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.23  E-value=0.0071  Score=52.68  Aligned_cols=100  Identities=15%  Similarity=0.113  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 026145          129 LALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQ  204 (243)
Q Consensus       129 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  204 (243)
                      ..+.+-|..+++..+|..++++|...+...|.+.    ++....+++.||+.+.+.+.|.+.+++|-+.+|.++-.-+..
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            3455678888999999999999999998877653    356778899999999999999999999999999998887878


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhccC
Q 026145          205 GDVFLAMDQYDAAEKSYSTCLQID  228 (243)
Q Consensus       205 a~~~~~~g~~~~A~~~~~~al~~~  228 (243)
                      -.+....+.-++|+....+.....
T Consensus       435 ~~~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  435 LQSFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhhh
Confidence            888888899999998888776543

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.22  E-value=0.0065  Score=46.90  Aligned_cols=130  Identities=17%  Similarity=0.106  Sum_probs=89.5

Q ss_pred             eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc---hHHHHHhHH
Q 026145           95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG---IHVLYKDRC  171 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~la  171 (243)
                      +.|....+++++..-+.++.+... ...+-..-+.++-..|....+...+.++..+|++|..+.-+++   .+..-...+
T Consensus        39 vafRnAk~feKakdcLlkA~~~yE-nnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKA  117 (308)
T KOG1585|consen   39 VAFRNAKKFEKAKDCLLKASKGYE-NNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKA  117 (308)
T ss_pred             HHHHhhccHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence            445566688888888877764331 2223334555666777777788999999999999998753322   123344455


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 026145          172 LARLTMGNFSAALEDVREALELAPNY------TEAYICQGDVFLAMDQYDAAEKSYSTCL  225 (243)
Q Consensus       172 ~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al  225 (243)
                      --.....++++|++.|++++.+--.+      .+.+-..+.++.+..++++|-..+.+-.
T Consensus       118 ak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~  177 (308)
T KOG1585|consen  118 AKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEG  177 (308)
T ss_pred             HHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhh
Confidence            55678889999999999998764322      2345566788889999998877776643

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.16  E-value=0.042  Score=40.35  Aligned_cols=136  Identities=11%  Similarity=0.018  Sum_probs=97.0

Q ss_pred             cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc--hHHHHHhHHHHHHHc
Q 026145          100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG--IHVLYKDRCLARLTM  177 (243)
Q Consensus       100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~la~~~~~~  177 (243)
                      .+.+++|..-|..+.+.+.     ......+.+..|.+..+.|+...|+..|.++-.-.|...  ...+...-+..+...
T Consensus        71 ~~k~d~Alaaf~~lektg~-----g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~  145 (221)
T COG4649          71 ENKTDDALAAFTDLEKTGY-----GSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDN  145 (221)
T ss_pred             cCCchHHHHHHHHHHhcCC-----CcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcc
Confidence            3466777777766543321     224566788889999999999999999999876654332  124556668888899


Q ss_pred             CCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          178 GNFSAALEDVREAL-ELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       178 ~~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      |.|++...-.+..- ..+|-...+.-.||.+-++-|++..|..+|..... +...|+.-..++++
T Consensus       146 gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~  209 (221)
T COG4649         146 GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQI  209 (221)
T ss_pred             ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHH
Confidence            99998776665432 23455567888899999999999999999998876 55555555544443

>smart00028 TPR Tetratricopeptide repeats

Probab=97.15  E-value=0.00092  Score=33.70  Aligned_cols=31  Identities=32%  Similarity=0.660  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 026145          200 AYICQGDVFLAMDQYDAAEKSYSTCLQIDPS  230 (243)
Q Consensus       200 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  230 (243)
                      +++.+|.++...+++++|+..++++++++|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4566666666666666666666666666654

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.14  E-value=0.0012  Score=55.63  Aligned_cols=116  Identities=11%  Similarity=0.106  Sum_probs=87.1

Q ss_pred             eEEEecCCHhHHHHHHHHHh-cCCCCCcchh--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhc---------cCCCC-
Q 026145           95 VVVGHCGTPARASEILMVLC-GIKSDHDAAK--NLEALALRKRAEAEFEKANFSEADGFLSQAIE---------LKPFG-  161 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l-~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---------~~p~~-  161 (243)
                      ..++..|++.+|.+.+...- ...+ ....+  -..-..|+++|.+++..+.|.-+..+|.+|++         +.|.. 
T Consensus       248 q~eY~~gn~~kA~KlL~~sni~~~~-g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~  326 (696)
T KOG2471|consen  248 QLEYAHGNHPKAMKLLLVSNIHKEA-GGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT  326 (696)
T ss_pred             HHHHHhcchHHHHHHHHhccccccc-CccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence            34455668888888876532 1111 11111  12445678999999999999999999999995         12211 


Q ss_pred             ------chHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 026145          162 ------GIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAM  211 (243)
Q Consensus       162 ------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  211 (243)
                            ...+..+|.|..|+..|++-.|.++|.++....-.+|..|.++|.|....
T Consensus       327 ~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  327 FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence                  02368899999999999999999999999999999999999999987653

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.10  E-value=0.0038  Score=40.91  Aligned_cols=65  Identities=20%  Similarity=0.158  Sum_probs=39.7

Q ss_pred             HHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCC
Q 026145          147 ADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNY--TEAYICQGDVFLAMDQ  213 (243)
Q Consensus       147 A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~  213 (243)
                      .+..+++.++.+|++.  .+.+.+|..+...|++++|++.+-.+++.++++  ..+.-.+-.++..+|.
T Consensus         7 ~~~al~~~~a~~P~D~--~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    7 DIAALEAALAANPDDL--DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHSTT-H--HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             cHHHHHHHHHcCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            3456677777777776  777777777777777777777777777776654  3344444444444443

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.07  E-value=0.011  Score=39.88  Aligned_cols=95  Identities=16%  Similarity=0.174  Sum_probs=76.1

Q ss_pred             HHHHHHHhcCHHHHHHHHHHhhccCCCCch-HHHHHhHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCcHHHH
Q 026145          134 RAEAEFEKANFSEADGFLSQAIELKPFGGI-HVLYKDRCLARLTMGN-----------FSAALEDVREALELAPNYTEAY  201 (243)
Q Consensus       134 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~la~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~  201 (243)
                      +|..++..|++-+|++..+..+...+++.. +..+...|.++..+..           .-.+++.+.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            467889999999999999999999887641 1344455776654432           3568999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145          202 ICQGDVFLAMDQYDAAEKSYSTCLQID  228 (243)
Q Consensus       202 ~~la~~~~~~g~~~~A~~~~~~al~~~  228 (243)
                      +.+|.-+.....|+++..-.++++.+.
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            999988888888999999888888763

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.07  E-value=0.01  Score=49.24  Aligned_cols=99  Identities=21%  Similarity=0.303  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccC-CCCc----h----HHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELK-PFGG----I----HVLYKDRCLARLTMGNFSAALEDVREALELAPN  196 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~----~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  196 (243)
                      .++...+..+......|+|..|++++.+.-.+. |..+    +    ...-..+..||+++++.+.|+....+.|.++|.
T Consensus       181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~  260 (569)
T PF15015_consen  181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS  260 (569)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence            334444444444444555555555555543332 2211    1    234457899999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026145          197 YTEAYICQGDVFLAMDQYDAAEKSYSTC  224 (243)
Q Consensus       197 ~~~~~~~la~~~~~~g~~~~A~~~~~~a  224 (243)
                      ++..++..|.++..+.+|.+|...+--+
T Consensus       261 ~frnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  261 YFRNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999987654433

>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families

Probab=97.01  E-value=0.0091  Score=37.65  Aligned_cols=70  Identities=24%  Similarity=0.414  Sum_probs=52.1

Q ss_pred             EEEEccCCccCccCHHHHHHHHHhcCCCcEEEEeeCCCCCCC---CCCeEEEecCCeEEEecCCHhHHHHHHHHHhcCCC
Q 026145           42 ELRVCTNRTCRRQGSMQILETLSSLAPPEVAVKSCGCLGRCG---AGPNLVALPDGVVVGHCGTPARASEILMVLCGIKS  118 (243)
Q Consensus        42 ~i~vC~~~~c~~~G~~~~~~~l~~~g~~~v~v~~~gc~g~c~---~~p~~~~~~~g~~~~~~~~~~~a~~~l~~~l~~~~  118 (243)
                      .|-+|.+.  ...|++.+++.|++.  +++.|...||++.|+   ..|-+.+  +|.+-... +.++..+-+.+.++..|
T Consensus         4 iVefC~~N--l~~g~~~~~~~Le~~--p~~~Vie~gCl~~Cg~C~~~pFAlV--nG~~V~A~-t~eeL~~kI~~~i~e~~   76 (78)
T PF07293_consen    4 IVEFCVSN--LASGTDQVYEKLEKD--PDIDVIEYGCLSYCGPCAKKPFALV--NGEIVAAE-TAEELLEKIKEKIEENP   76 (78)
T ss_pred             eEEEcccC--chhhhHHHHHHHhcC--CCccEEEcChhhhCcCCCCCccEEE--CCEEEecC-CHHHHHHHHHHHHhccc
Confidence            47778754  347899999999864  578999999999877   5676655  67766655 88888877777776553

Members contain four highly conserved cysteine residues and their function is unknown.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=96.97  E-value=0.024  Score=40.42  Aligned_cols=86  Identities=17%  Similarity=0.022  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 026145          128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDV  207 (243)
Q Consensus       128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  207 (243)
                      ...+......-....+.+++...+...--+.|+.+  .+-..-|..+...|+|.+|+..++......+..+.+.-.++.|
T Consensus        10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~--e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C   87 (153)
T TIGR02561        10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLK--ELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC   87 (153)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcc--ccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence            34455555666668999999999998888999977  8888889999999999999999999998888888888889999


Q ss_pred             HHHcCCHH
Q 026145          208 FLAMDQYD  215 (243)
Q Consensus       208 ~~~~g~~~  215 (243)
                      +..+|+.+
T Consensus        88 L~al~Dp~   95 (153)
T TIGR02561        88 LNAKGDAE   95 (153)
T ss_pred             HHhcCChH
Confidence            99999743

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.97  E-value=0.018  Score=44.22  Aligned_cols=100  Identities=17%  Similarity=0.125  Sum_probs=71.6

Q ss_pred             HHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHhHHHHHHH-cCCHHHHHHHHHHHHHhCCCc------HHHHHH
Q 026145          135 AEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKDRCLARLT-MGNFSAALEDVREALELAPNY------TEAYIC  203 (243)
Q Consensus       135 a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~------~~~~~~  203 (243)
                      +...++..++.+|+..+++++++..+-+    -+..+..+|.+|-. +.++++|+.+|+++-+-....      -..+..
T Consensus        80 A~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lK  159 (288)
T KOG1586|consen   80 AANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLK  159 (288)
T ss_pred             HHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHH
Confidence            3334566689999999999998876532    01234467777754 488999999999987654322      345666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhccCCCchhh
Q 026145          204 QGDVFLAMDQYDAAEKSYSTCLQIDPSIRRS  234 (243)
Q Consensus       204 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  234 (243)
                      .+..-..+++|.+|+..|++.....-+++-+
T Consensus       160 vA~yaa~leqY~~Ai~iyeqva~~s~~n~LL  190 (288)
T KOG1586|consen  160 VAQYAAQLEQYSKAIDIYEQVARSSLDNNLL  190 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence            7777788999999999999988766555544

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.96  E-value=0.011  Score=38.80  Aligned_cols=49  Identities=20%  Similarity=0.288  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145          183 ALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI  231 (243)
Q Consensus       183 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  231 (243)
                      .+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            4677888899999999999999999999999999999999999988765

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.94  E-value=0.0039  Score=50.76  Aligned_cols=100  Identities=10%  Similarity=0.007  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC----c---
Q 026145          129 LALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKDRCLARLTMGNFSAALEDVREALELAPN----Y---  197 (243)
Q Consensus       129 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~---  197 (243)
                      .....+|+.+...+.++++++.|++|++...++.    --.++..+|..+..++++++|+-+..+|.++-.+    +   
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~  202 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL  202 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence            3445578888888999999999999998754432    1257888999999999999999999998876421    1   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145          198 ---TEAYICQGDVFLAMDQYDAAEKSYSTCLQID  228 (243)
Q Consensus       198 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  228 (243)
                         .-+++.+++++..+|..-.|.+..+++.++.
T Consensus       203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence               3467889999999999999999888887653

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.91  E-value=0.015  Score=44.61  Aligned_cols=96  Identities=17%  Similarity=0.071  Sum_probs=68.5

Q ss_pred             HHHHhcCHHHHHHHHHHhhccC----CCC-chHHHHHhHHHHHHHcCCH-------HHHHHHHHHHHHhCC------CcH
Q 026145          137 AEFEKANFSEADGFLSQAIELK----PFG-GIHVLYKDRCLARLTMGNF-------SAALEDVREALELAP------NYT  198 (243)
Q Consensus       137 ~~~~~~~~~~A~~~~~~al~~~----p~~-~~~~~~~~la~~~~~~~~~-------~~A~~~~~~al~~~p------~~~  198 (243)
                      .+.....+++|++.|.-|+-..    +.+ ..+..+..+|.+|..+++.       ..|++.|.+++....      +..
T Consensus        86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~  165 (214)
T PF09986_consen   86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA  165 (214)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence            3445667888888887776431    121 1467788889999998885       455666666665432      225


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 026145          199 EAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIR  232 (243)
Q Consensus       199 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  232 (243)
                      ...+.+|.+..+.|++++|..+|.+++.....+.
T Consensus       166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~  199 (214)
T PF09986_consen  166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK  199 (214)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence            6888999999999999999999999998654433

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.90  E-value=0.0016  Score=49.57  Aligned_cols=62  Identities=29%  Similarity=0.434  Sum_probs=57.0

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 026145          172 LARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRR  233 (243)
Q Consensus       172 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  233 (243)
                      ......++.+.|.+.|.+++.+.|.+...|+.+|....+.|+++.|.+.|.+.++++|++..
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            44567889999999999999999999999999999999999999999999999999998654

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.87  E-value=0.064  Score=39.96  Aligned_cols=102  Identities=18%  Similarity=0.123  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHH---
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELA--PNYTE---  199 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~---  199 (243)
                      ..-.++..+|..|.+.|+.+.|++.|.++.+.-.... ..+.++++-.+.+..++|..+.....++-..-  +.++.   
T Consensus        34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~n  113 (177)
T PF10602_consen   34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRN  113 (177)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence            4556788999999999999999999999877543221 45677888888899999999999999887653  23333   


Q ss_pred             -HHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145          200 -AYICQGDVFLAMDQYDAAEKSYSTCLQI  227 (243)
Q Consensus       200 -~~~~la~~~~~~g~~~~A~~~~~~al~~  227 (243)
                       .....|..+...++|.+|-+.|-.+..-
T Consensus       114 rlk~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen  114 RLKVYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence             2334577778899999999888766543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.85  E-value=0.096  Score=43.43  Aligned_cols=124  Identities=19%  Similarity=0.144  Sum_probs=73.2

Q ss_pred             EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc
Q 026145           98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM  177 (243)
Q Consensus        98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~  177 (243)
                      .-.|++++|.+-|+..+....       ....-+..+=......|+.+.|+.+-+.+-...|.-+  .++...-......
T Consensus       131 l~eG~~~~Ar~kfeAMl~dPE-------tRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~--WA~~AtLe~r~~~  201 (531)
T COG3898         131 LLEGDYEDARKKFEAMLDDPE-------TRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLP--WAARATLEARCAA  201 (531)
T ss_pred             HhcCchHHHHHHHHHHhcChH-------HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCc--hHHHHHHHHHHhc
Confidence            346688999988887664331       1111111111222345666666666666666666633  5555444555566


Q ss_pred             CCHHHHHHHHH-----------------------------------------HHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 026145          178 GNFSAALEDVR-----------------------------------------EALELAPNYTEAYICQGDVFLAMDQYDA  216 (243)
Q Consensus       178 ~~~~~A~~~~~-----------------------------------------~al~~~p~~~~~~~~la~~~~~~g~~~~  216 (243)
                      |+|+.|++..+                                         +++++.|+...+-.--+.++++.|+..+
T Consensus       202 gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rK  281 (531)
T COG3898         202 GDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRK  281 (531)
T ss_pred             CChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhh
Confidence            66666655554                                         4444455555666666777777777777


Q ss_pred             HHHHHHHHhccCCC
Q 026145          217 AEKSYSTCLQIDPS  230 (243)
Q Consensus       217 A~~~~~~al~~~p~  230 (243)
                      +-..++.+.+.+|+
T Consensus       282 g~~ilE~aWK~ePH  295 (531)
T COG3898         282 GSKILETAWKAEPH  295 (531)
T ss_pred             hhhHHHHHHhcCCC
Confidence            77777777777664

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.85  E-value=0.027  Score=43.26  Aligned_cols=107  Identities=14%  Similarity=-0.053  Sum_probs=70.3

Q ss_pred             ecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHH-------HHHHHHHHhhccCCC--Cc--hHHHH
Q 026145           99 HCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFS-------EADGFLSQAIELKPF--GG--IHVLY  167 (243)
Q Consensus        99 ~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-------~A~~~~~~al~~~p~--~~--~~~~~  167 (243)
                      ...+.++|++.+.-++-...-........+..+..+|+.|...++.+       .|+..|.+++.....  ..  -..+.
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~  168 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL  168 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence            34488889888776552211012223367888889999999888854       555555555544322  21  23677


Q ss_pred             HhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHH
Q 026145          168 KDRCLARLTMGNFSAALEDVREALELAPNYT-EAYICQG  205 (243)
Q Consensus       168 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la  205 (243)
                      +.+|.+..+.|++++|..+|.+++.....+. .....+|
T Consensus       169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~A  207 (214)
T PF09986_consen  169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMA  207 (214)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence            8899999999999999999999997433222 2444444

>PF07845 DUF1636: Protein of unknown function (DUF1636); InterPro: IPR012863 The sequences featured in this family are derived from a number of hypothetical prokaryotic proteins

Probab=96.82  E-value=0.0057  Score=41.90  Aligned_cols=67  Identities=31%  Similarity=0.515  Sum_probs=46.5

Q ss_pred             EEEccCCccCc---------cCHHHHHHHHHhc----CC-CcEEEEeeCCCCCCCCCCeEEEecCCeEEEecC--CH-hH
Q 026145           43 LRVCTNRTCRR---------QGSMQILETLSSL----AP-PEVAVKSCGCLGRCGAGPNLVALPDGVVVGHCG--TP-AR  105 (243)
Q Consensus        43 i~vC~~~~c~~---------~G~~~~~~~l~~~----g~-~~v~v~~~gc~g~c~~~p~~~~~~~g~~~~~~~--~~-~~  105 (243)
                      |+||+  +|..         +++..++++|+..    +. ..|.|..+.|+..|..+-++.+...|.+-+-.|  ++ ++
T Consensus         1 l~VC~--tCr~~~~~~~~~~~~G~~L~~aL~~~~~~~~~~~~v~v~~v~CL~~C~r~CtVA~~~~gK~tYlfGdl~p~~~   78 (116)
T PF07845_consen    1 LFVCT--TCRRSGEDPEDGPRPGAALLDALRAALADAPLPDGVEVRPVECLSACDRPCTVALQAPGKWTYLFGDLDPDED   78 (116)
T ss_pred             CEEeC--CCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCCceEEEeccHHhcCCCceEEEEEcCCCcEEEEecCCcccC
Confidence            56775  4444         4789999999985    43 379999999999999999988876554333333  33 44


Q ss_pred             HHHHHH
Q 026145          106 ASEILM  111 (243)
Q Consensus       106 a~~~l~  111 (243)
                      +..++.
T Consensus        79 a~~il~   84 (116)
T PF07845_consen   79 AEDILA   84 (116)
T ss_pred             HHHHHH
Confidence            554443

The region in question is approximately 130 amino acids long.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.71  E-value=0.028  Score=41.92  Aligned_cols=94  Identities=19%  Similarity=0.075  Sum_probs=72.0

Q ss_pred             EEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHH
Q 026145           97 VGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLT  176 (243)
Q Consensus        97 ~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~  176 (243)
                      +...+++++|...++..+....    +....+-+-.++|.+....+.+++|+..++..-.-.-   .+.....+|.++..
T Consensus        99 ~ve~~~~d~A~aqL~~~l~~t~----De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w---~~~~~elrGDill~  171 (207)
T COG2976          99 EVEANNLDKAEAQLKQALAQTK----DENLKALAALRLARVQLQQKKADAALKTLDTIKEESW---AAIVAELRGDILLA  171 (207)
T ss_pred             HHhhccHHHHHHHHHHHHccch----hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH---HHHHHHHhhhHHHH
Confidence            3445699999999998886553    2224555677899999999999999999876443211   12455668999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCc
Q 026145          177 MGNFSAALEDVREALELAPNY  197 (243)
Q Consensus       177 ~~~~~~A~~~~~~al~~~p~~  197 (243)
                      .|+-.+|...|++++..+++.
T Consensus       172 kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         172 KGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             cCchHHHHHHHHHHHHccCCh
Confidence            999999999999999987544

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.70  E-value=0.041  Score=42.62  Aligned_cols=103  Identities=18%  Similarity=0.127  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhC-----CCc
Q 026145          127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKDRCLARLTMGNFSAALEDVREALELA-----PNY  197 (243)
Q Consensus       127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~  197 (243)
                      -+..+...+..|....+|++|...+.+|.+-..++.    -+.+|-..++....+..+.++...++++..+.     |+.
T Consensus        30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt  109 (308)
T KOG1585|consen   30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT  109 (308)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence            344566666677778999999999999997655542    13556667788888999999999999998763     444


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 026145          198 TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP  229 (243)
Q Consensus       198 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  229 (243)
                      +..-...+--....-+.++|++.|++++.+-.
T Consensus       110 AAmaleKAak~lenv~Pd~AlqlYqralavve  141 (308)
T KOG1585|consen  110 AAMALEKAAKALENVKPDDALQLYQRALAVVE  141 (308)
T ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence            44444455555566789999999999987643

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.68  E-value=0.0098  Score=46.74  Aligned_cols=68  Identities=18%  Similarity=0.160  Sum_probs=34.8

Q ss_pred             HhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhh
Q 026145          168 KDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK  235 (243)
Q Consensus       168 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  235 (243)
                      .++=..+...++++.|+...++.+.++|.++.-+.-.|.+|.++|.+.-|++.++..++.-|+++.+-
T Consensus       185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~  252 (269)
T COG2912         185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE  252 (269)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence            33334444455555555555555555555555555555555555555555555555555555554443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.67  E-value=0.022  Score=51.32  Aligned_cols=100  Identities=14%  Similarity=-0.012  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhh----------ccCCCCc--------hHHHHHhHHHHHHHcCCHHHHHHHHH
Q 026145          127 EALALRKRAEAEFEKANFSEADGFLSQAI----------ELKPFGG--------IHVLYKDRCLARLTMGNFSAALEDVR  188 (243)
Q Consensus       127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al----------~~~p~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~  188 (243)
                      .-..+++.|..+...++.+.|+++|+++-          .-+|...        ....|...|..+-..|+.+.|+..|.
T Consensus       857 Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~  936 (1416)
T KOG3617|consen  857 LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYS  936 (1416)
T ss_pred             hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence            34568888999999999999999999872          2223210        12677788999999999999999998


Q ss_pred             HHHHhC---------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145          189 EALELA---------------------PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ  226 (243)
Q Consensus       189 ~al~~~---------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  226 (243)
                      .|-.-.                     ..+..+-+.+|..|...|++.+|+.+|.+|-.
T Consensus       937 ~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  937 SAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             HhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            775332                     34567899999999999999999998887644

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.61  E-value=0.13  Score=41.53  Aligned_cols=116  Identities=17%  Similarity=0.071  Sum_probs=86.9

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHH----hcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFE----KANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM  177 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~  177 (243)
                      +...|.+.+......+         .+.+.+.+|..+..    ..++.+|..+|.++........ ..+.+.++.+|..-
T Consensus        92 ~~~~A~~~~~~~a~~g---------~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-~~~~~~l~~~~~~g  161 (292)
T COG0790          92 DKTKAADWYRCAAADG---------LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA-ALAMYRLGLAYLSG  161 (292)
T ss_pred             cHHHHHHHHHHHhhcc---------cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-HHHHHHHHHHHHcC
Confidence            5788888888655444         35677788888876    4599999999999998754420 13477788887654


Q ss_pred             C-------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCC
Q 026145          178 G-------NFSAALEDVREALELAPNYTEAYICQGDVFLA----MDQYDAAEKSYSTCLQIDP  229 (243)
Q Consensus       178 ~-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p  229 (243)
                      .       +...|+..|.++-...  ++.+.+.+|.+|..    ..++++|..+|.++.+...
T Consensus       162 ~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~  222 (292)
T COG0790         162 LQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD  222 (292)
T ss_pred             hhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence            1       2347899999887755  78899999988865    3388999999999998776

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=96.57  E-value=0.14  Score=45.07  Aligned_cols=138  Identities=13%  Similarity=0.101  Sum_probs=102.6

Q ss_pred             ecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc--hHHHHHhHHHHHHH
Q 026145           99 HCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG--IHVLYKDRCLARLT  176 (243)
Q Consensus        99 ~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~la~~~~~  176 (243)
                      ..|++.+.+..+..++..- +|..........|...|..|...|+.+.|...|+++....=...  ++.+|.+.|..-+.
T Consensus       359 ~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElr  437 (835)
T KOG2047|consen  359 YEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELR  437 (835)
T ss_pred             hcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHh
Confidence            3457888888888877544 24444556677899999999999999999999999998752211  57899999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCC-------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhh
Q 026145          177 MGNFSAALEDVREALELAPN-------------------YTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSF  237 (243)
Q Consensus       177 ~~~~~~A~~~~~~al~~~p~-------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  237 (243)
                      ..+++.|+...++|... |.                   +...|...+......|-++.....|.+.+.+---.|+.-.+
T Consensus       438 h~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N  516 (835)
T KOG2047|consen  438 HENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN  516 (835)
T ss_pred             hhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            99999999999988753 21                   23466777777777887877778888887776555544433


Q ss_pred             h
Q 026145          238 K  238 (243)
Q Consensus       238 ~  238 (243)
                      +
T Consensus       517 y  517 (835)
T KOG2047|consen  517 Y  517 (835)
T ss_pred             H
Confidence            3

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.47  E-value=0.17  Score=41.69  Aligned_cols=115  Identities=18%  Similarity=0.175  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc--hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhC---C-----
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG--IHVLYKDRCLARLTMGNFSAALEDVREALELA---P-----  195 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p-----  195 (243)
                      ..+..|...+....+.|.++.|...+.++....+...  .+.+.+..+..+...|+..+|+..++..+...   +     
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~  223 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS  223 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence            6677899999999999999999999999988653211  12678888999999999999999998888711   1     


Q ss_pred             --------------------------CcHHHHHHHHHHHHHc------CCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          196 --------------------------NYTEAYICQGDVFLAM------DQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       196 --------------------------~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                                                ..+.++..+|......      ++.+++...|.+++.++|+...++...+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~  300 (352)
T PF02259_consen  224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL  300 (352)
T ss_pred             HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence                                      0134677777777777      88999999999999999998888776654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=96.47  E-value=0.054  Score=47.56  Aligned_cols=132  Identities=13%  Similarity=0.088  Sum_probs=85.9

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCC-------C--c--
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPF-------G--G--  162 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~--~--  162 (243)
                      +..|...|+.++|..+|+++...+-   ......+..|..-|.--.+..+++.|+...+.|...-..       +  +  
T Consensus       394 aklYe~~~~l~~aRvifeka~~V~y---~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ  470 (835)
T KOG2047|consen  394 AKLYENNGDLDDARVIFEKATKVPY---KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQ  470 (835)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhcCCc---cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHH
Confidence            4567788899999999999886553   122255778888888888888999999999888754211       0  0  


Q ss_pred             -----hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145          163 -----IHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID  228 (243)
Q Consensus       163 -----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  228 (243)
                           ...+|..++...-..|-++.--..|++.+.+.--.|....|.|..+....-+++|.+.|++.+.+-
T Consensus       471 ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF  541 (835)
T KOG2047|consen  471 ARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLF  541 (835)
T ss_pred             HHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence                 013444445555555666666666666666655556666666666666666666666666665553

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.46  E-value=0.12  Score=41.28  Aligned_cols=110  Identities=16%  Similarity=0.022  Sum_probs=80.6

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHh-------------------
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQA-------------------  154 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-------------------  154 (243)
                      +.-....|++.++...|..++...+       .+..+...++.++...|+.+.|...+...                   
T Consensus       141 ~~~~~~~e~~~~a~~~~~~al~~~~-------~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll  213 (304)
T COG3118         141 AKELIEAEDFGEAAPLLKQALQAAP-------ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL  213 (304)
T ss_pred             hhhhhhccchhhHHHHHHHHHHhCc-------ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence            3345567799999999999998887       55777788888888888887777666542                   


Q ss_pred             ---------------hccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcC
Q 026145          155 ---------------IELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPN--YTEAYICQGDVFLAMD  212 (243)
Q Consensus       155 ---------------l~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g  212 (243)
                                     +..+|++.  .+.+.++..+...|++++|++.+-..++.+..  +..+.-.+-.++...|
T Consensus       214 ~qaa~~~~~~~l~~~~aadPdd~--~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         214 EQAAATPEIQDLQRRLAADPDDV--EAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHhcCCCHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence                           12257766  88889999999999999999999888877643  3344444444444444

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.45  E-value=0.25  Score=39.71  Aligned_cols=131  Identities=14%  Similarity=0.073  Sum_probs=93.2

Q ss_pred             ecCCHhHHHHHHHHHhcCC-CCCcchhhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHhhcc----CCCC---c-----hH
Q 026145           99 HCGTPARASEILMVLCGIK-SDHDAAKNLEALALRKRAEAEFEKA-NFSEADGFLSQAIEL----KPFG---G-----IH  164 (243)
Q Consensus        99 ~~~~~~~a~~~l~~~l~~~-~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~----~p~~---~-----~~  164 (243)
                      ..|+.+.|..++.++-... .-........+..+++.|......+ ++++|+.+++++.++    .+.+   +     ..
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~   84 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL   84 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence            4568888888888765432 1122334467778999999999999 999999999999887    2211   1     13


Q ss_pred             HHHHhHHHHHHHcCCHH---HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 026145          165 VLYKDRCLARLTMGNFS---AALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP  229 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  229 (243)
                      .++..++.+|...+.++   +|....+.+-.-.|+.+..+...=.++.+.++.+++.+.+.+.+..-+
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            56778899999888765   445555555556688777775555555558889999999998887543

It is also involved in sporulation [].

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.45  E-value=0.045  Score=46.58  Aligned_cols=92  Identities=10%  Similarity=0.041  Sum_probs=77.5

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCC-H
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN-F  180 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~-~  180 (243)
                      -+.....+|+.+....+       .+...|........+.+.+.+--..|.+++..+|+++  +.|..-|.-.+.-+. .
T Consensus        86 i~~rIv~lyr~at~rf~-------~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~--dLWI~aA~wefe~n~ni  156 (568)
T KOG2396|consen   86 IPNRIVFLYRRATNRFN-------GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNP--DLWIYAAKWEFEINLNI  156 (568)
T ss_pred             HHHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCc--hhHHhhhhhHHhhccch
Confidence            45677888888887665       5677888777777777779999999999999999998  999988888877776 8


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHH
Q 026145          181 SAALEDVREALELAPNYTEAYI  202 (243)
Q Consensus       181 ~~A~~~~~~al~~~p~~~~~~~  202 (243)
                      +.|...+.++|+.+|+++..|.
T Consensus       157 ~saRalflrgLR~npdsp~Lw~  178 (568)
T KOG2396|consen  157 ESARALFLRGLRFNPDSPKLWK  178 (568)
T ss_pred             HHHHHHHHHHhhcCCCChHHHH
Confidence            9999999999999999987654

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.42  E-value=0.054  Score=43.96  Aligned_cols=102  Identities=16%  Similarity=0.038  Sum_probs=82.1

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHh-CCCcH---HHHHHHHHH
Q 026145          132 RKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALEL-APNYT---EAYICQGDV  207 (243)
Q Consensus       132 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~---~~~~~la~~  207 (243)
                      ...+.++...|++.+|-..+++.++-.|.+.  -++..--.+++.+|+.......+++++.. +|+-|   ...-.++..
T Consensus       107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDl--la~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg  184 (491)
T KOG2610|consen  107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDL--LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG  184 (491)
T ss_pred             hhhHHHhhccccccHHHHHHHHHHHhCchhh--hhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence            3445566788999999999999999999986  56666667788899999999999999876 55543   344456778


Q ss_pred             HHHcCCHHHHHHHHHHHhccCCCchhhh
Q 026145          208 FLAMDQYDAAEKSYSTCLQIDPSIRRSK  235 (243)
Q Consensus       208 ~~~~g~~~~A~~~~~~al~~~p~~~~~~  235 (243)
                      +...|-|++|++.-.++++++|.+.=+.
T Consensus       185 L~E~g~y~dAEk~A~ralqiN~~D~Wa~  212 (491)
T KOG2610|consen  185 LEECGIYDDAEKQADRALQINRFDCWAS  212 (491)
T ss_pred             HHHhccchhHHHHHHhhccCCCcchHHH
Confidence            8899999999999999999999875443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.37  E-value=0.011  Score=32.12  Aligned_cols=29  Identities=31%  Similarity=0.356  Sum_probs=18.9

Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHHHHHh
Q 026145          165 VLYKDRCLARLTMGNFSAALEDVREALEL  193 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~  193 (243)
                      .++.++|.+|..+|++++|+..+++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45666777777777777777777766654

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.36  E-value=0.12  Score=40.55  Aligned_cols=105  Identities=15%  Similarity=0.103  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHH-hcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHH-HHHHHHHHHHHhCCCcHHHHHHHHHH
Q 026145          130 ALRKRAEAEFE-KANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFS-AALEDVREALELAPNYTEAYICQGDV  207 (243)
Q Consensus       130 ~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~la~~  207 (243)
                      .|..+-.++.. ..+..+-+++..+.++-+|.|-  ++|..+-.+.-..|++. .-++....++..+..+-.+|..+-.+
T Consensus        79 VW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNY--QvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~  156 (318)
T KOG0530|consen   79 VWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNY--QVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWV  156 (318)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccch--hHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHH
Confidence            34333333333 3456777788888888888876  88888877877888877 77888888888887777788887777


Q ss_pred             HHHcCCHHHHHHHHHHHhccCCCchhhhh
Q 026145          208 FLAMDQYDAAEKSYSTCLQIDPSIRRSKS  236 (243)
Q Consensus       208 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~  236 (243)
                      ....+.++.-+.+..+.++.+--+-.+|.
T Consensus       157 ~r~F~~~~~EL~y~~~Lle~Di~NNSAWN  185 (318)
T KOG0530|consen  157 LRFFKDYEDELAYADELLEEDIRNNSAWN  185 (318)
T ss_pred             HHHHhhHHHHHHHHHHHHHHhhhccchhh
Confidence            77777777777777777766655555543

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.36  E-value=0.052  Score=42.78  Aligned_cols=78  Identities=22%  Similarity=0.244  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 026145          127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGD  206 (243)
Q Consensus       127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  206 (243)
                      ......++=..+...++++.|...-++.+.++|+++  .-+..+|.+|.++|.+..|+++++..++.-|+.+.+-.-...
T Consensus       180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp--~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~  257 (269)
T COG2912         180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDP--YEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCCh--hhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence            333444555667889999999999999999999987  778899999999999999999999999999998876655443

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.35  E-value=0.054  Score=42.42  Aligned_cols=98  Identities=14%  Similarity=0.109  Sum_probs=84.0

Q ss_pred             HhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH-HH
Q 026145          140 EKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMG-NFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYD-AA  217 (243)
Q Consensus       140 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A  217 (243)
                      +...-+.|+.+-..+|.++|.+-  .+|..+-.++..++ +..+-++++++++.-+|.+-..|..+-.+...+|+.. .-
T Consensus        55 ~~E~S~RAl~LT~d~i~lNpAnY--TVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE  132 (318)
T KOG0530|consen   55 KNEKSPRALQLTEDAIRLNPANY--TVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE  132 (318)
T ss_pred             ccccCHHHHHHHHHHHHhCcccc--hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence            34556778888899999999976  88888777776554 6788899999999999999999999999999999988 78


Q ss_pred             HHHHHHHhccCCCchhhhhhhh
Q 026145          218 EKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       218 ~~~~~~al~~~p~~~~~~~~~a  239 (243)
                      +++.+.++..+..+-.+|.+++
T Consensus       133 Lef~~~~l~~DaKNYHaWshRq  154 (318)
T KOG0530|consen  133 LEFTKLMLDDDAKNYHAWSHRQ  154 (318)
T ss_pred             HHHHHHHHhccccchhhhHHHH
Confidence            8999999999999999988765

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.28  E-value=0.057  Score=39.13  Aligned_cols=77  Identities=14%  Similarity=0.124  Sum_probs=68.2

Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          165 VLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ..+.....+-...++.+++...+.-.-.+.|..+..-..-|.++...|+|.+|+..++....-.|..+.+..+++-+
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C   87 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC   87 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            55666777778889999999999988889999999999999999999999999999999999999888877776654

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.25  E-value=0.092  Score=43.67  Aligned_cols=99  Identities=12%  Similarity=0.083  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhhcc----CCCCchHHHHHhHHHHHHH---cCCHHHHHHHHHHHH-HhCCCcHHHHH
Q 026145          131 LRKRAEAEFEKANFSEADGFLSQAIEL----KPFGGIHVLYKDRCLARLT---MGNFSAALEDVREAL-ELAPNYTEAYI  202 (243)
Q Consensus       131 ~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~al-~~~p~~~~~~~  202 (243)
                      ..++=..|....+|+.-+.+.+..-.+    -++..  .+.+.+|.++-+   .|+.++|+..+..++ ...+.+++.+.
T Consensus       144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~--~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g  221 (374)
T PF13281_consen  144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQH--NIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG  221 (374)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcch--HHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence            344445577788899888888876655    33333  677788889988   999999999999954 45667889999


Q ss_pred             HHHHHHHHc---------CCHHHHHHHHHHHhccCCCc
Q 026145          203 CQGDVFLAM---------DQYDAAEKSYSTCLQIDPSI  231 (243)
Q Consensus       203 ~la~~~~~~---------g~~~~A~~~~~~al~~~p~~  231 (243)
                      .+|.+|...         ...++|+.+|.++..++|+.
T Consensus       222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~  259 (374)
T PF13281_consen  222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY  259 (374)
T ss_pred             HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence            999888642         24788999999999999763

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.24  E-value=0.0091  Score=47.71  Aligned_cols=87  Identities=8%  Similarity=0.031  Sum_probs=66.3

Q ss_pred             HHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHhccCC
Q 026145          151 LSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYIC-QGDVFLAMDQYDAAEKSYSTCLQIDP  229 (243)
Q Consensus       151 ~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p  229 (243)
                      |.++-...|+++  ..|...+....+.+-|.+--..|.+++..+|.+.+.|.. -+--+...++.+.+...++++++++|
T Consensus        96 ~~R~tnkff~D~--k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~  173 (435)
T COG5191          96 LYRSTNKFFNDP--KIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS  173 (435)
T ss_pred             eehhhhcCCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence            333444456666  777777766677778888888888899999988888876 34556778888889999999999999


Q ss_pred             Cchhhhhhhh
Q 026145          230 SIRRSKSFKV  239 (243)
Q Consensus       230 ~~~~~~~~~a  239 (243)
                      ++|..|..+-
T Consensus       174 ~~p~iw~eyf  183 (435)
T COG5191         174 RSPRIWIEYF  183 (435)
T ss_pred             CCchHHHHHH
Confidence            9888886543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.20  E-value=0.045  Score=49.47  Aligned_cols=88  Identities=20%  Similarity=0.164  Sum_probs=65.9

Q ss_pred             HHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHH----------HHhCC---------
Q 026145          135 AEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREA----------LELAP---------  195 (243)
Q Consensus       135 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a----------l~~~p---------  195 (243)
                      -..|...|.|++|.+.-+.-=++.    +...|++.+.-+-..++.+.|+++|+++          |.-+|         
T Consensus       833 NKlyQs~g~w~eA~eiAE~~DRiH----Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~  908 (1416)
T KOG3617|consen  833 NKLYQSQGMWSEAFEIAETKDRIH----LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRR  908 (1416)
T ss_pred             HHHHHhcccHHHHHHHHhhcccee----hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHh
Confidence            345566788888877765433333    3467999999999999999999999874          22233         


Q ss_pred             -CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145          196 -NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ  226 (243)
Q Consensus       196 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  226 (243)
                       .++..|...|..+...|+.+.|+.+|..|-.
T Consensus       909 ~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D  940 (1416)
T KOG3617|consen  909 KRDESLYSWWGQYLESVGEMDAALSFYSSAKD  940 (1416)
T ss_pred             ccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence             3456788889999999999999999988754

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.19  E-value=0.097  Score=42.99  Aligned_cols=55  Identities=15%  Similarity=0.036  Sum_probs=25.9

Q ss_pred             HHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 026145          146 EADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYI  202 (243)
Q Consensus       146 ~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  202 (243)
                      .-+..|++||+.+|++.  ..+..+-....+.-+-++...-+++++..+|+++..|.
T Consensus        49 ~klsilerAL~~np~~~--~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~  103 (321)
T PF08424_consen   49 RKLSILERALKHNPDSE--RLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWR  103 (321)
T ss_pred             HHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHH
Confidence            33444555555555443  44433333334444445555555555555555444433

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.16  E-value=0.013  Score=31.81  Aligned_cols=31  Identities=19%  Similarity=0.269  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145          198 TEAYICQGDVFLAMDQYDAAEKSYSTCLQID  228 (243)
Q Consensus       198 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  228 (243)
                      ..++.++|.+|..+|++++|..++++++.+.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            3578899999999999999999999998753

>COG5469 Predicted metal-binding protein [Function unknown]

Probab=96.16  E-value=0.032  Score=38.64  Aligned_cols=74  Identities=23%  Similarity=0.315  Sum_probs=48.3

Q ss_pred             CCCcEEEEccCCc--------cCccCHHHHHHHHHhc----CC-CcEEEEeeCCCCCCCCCCeEEEecCC-eEEEecC-C
Q 026145           38 AELKELRVCTNRT--------CRRQGSMQILETLSSL----AP-PEVAVKSCGCLGRCGAGPNLVALPDG-VVVGHCG-T  102 (243)
Q Consensus        38 ~~~~~i~vC~~~~--------c~~~G~~~~~~~l~~~----g~-~~v~v~~~gc~g~c~~~p~~~~~~~g-~~~~~~~-~  102 (243)
                      .+++.++||..-.        -...+++.+++.+.++    .+ ..+.|..++|+..|..+-++.....+ ..|...+ +
T Consensus        15 ~~~htlfVCksC~~~~~~~~~~~p~~G~~Ll~kl~~l~qe~~~~~e~~I~~VeCl~~C~r~c~vA~~~~~k~sYLFgdL~   94 (143)
T COG5469          15 MPKHTLFVCKSCRDVSQEGKENGPSDGSILLDKLQELAQEWEIAHEFEIQTVECLAACNRGCVVAFSGPGKPSYLFGDLT   94 (143)
T ss_pred             cCceEEEEeccccccccCCccCCCCcHHHHHHHHHHHHhhhhhhccceeeeeHhhhhcCCCeEEEEecCCCceEEEccCC
Confidence            3678999997431        1123678899998873    22 36889999999999999888765544 3333221 4


Q ss_pred             HhH-HHHHHH
Q 026145          103 PAR-ASEILM  111 (243)
Q Consensus       103 ~~~-a~~~l~  111 (243)
                      +++ |.++++
T Consensus        95 p~d~a~dLl~  104 (143)
T COG5469          95 PDDSASDLLE  104 (143)
T ss_pred             ccccHHHHHH
Confidence            444 444443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.13  E-value=0.22  Score=41.04  Aligned_cols=131  Identities=14%  Similarity=0.070  Sum_probs=96.2

Q ss_pred             EEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc-CCC---------------
Q 026145           97 VGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIEL-KPF---------------  160 (243)
Q Consensus        97 ~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~---------------  160 (243)
                      ....|.++.|...+.++....+ .  .....+...+..+..+...|+..+|+..++..+.. ...               
T Consensus       156 aRk~g~~~~A~~~l~~~~~~~~-~--~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~  232 (352)
T PF02259_consen  156 ARKAGNFQLALSALNRLFQLNP-S--SESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLL  232 (352)
T ss_pred             HHHCCCcHHHHHHHHHHhccCC-c--ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccc
Confidence            3556788888888888775442 0  01114567788899999999999999998888871 100               


Q ss_pred             -----------Cc-----hHHHHHhHHHHHHHc------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-----
Q 026145          161 -----------GG-----IHVLYKDRCLARLTM------GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQ-----  213 (243)
Q Consensus       161 -----------~~-----~~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-----  213 (243)
                                 ..     .+.++..+|......      +..++++..|.++++.+|.+..+|+.+|..+...=+     
T Consensus       233 ~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~  312 (352)
T PF02259_consen  233 ESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPRE  312 (352)
T ss_pred             cccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhc
Confidence                       00     245666677766667      888999999999999999999999999888765422     


Q ss_pred             ------------HHHHHHHHHHHhccCCC
Q 026145          214 ------------YDAAEKSYSTCLQIDPS  230 (243)
Q Consensus       214 ------------~~~A~~~~~~al~~~p~  230 (243)
                                  ...|+..|-+++...++
T Consensus       313 ~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  313 KEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence                        13488889999988887

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=95.95  E-value=0.0097  Score=48.26  Aligned_cols=109  Identities=17%  Similarity=0.156  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhhccCC---CC----------c----hHHHHHhHHHHHHHcCCHHHHHHHHHHHHH
Q 026145          130 ALRKRAEAEFEKANFSEADGFLSQAIELKP---FG----------G----IHVLYKDRCLARLTMGNFSAALEDVREALE  192 (243)
Q Consensus       130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~----------~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~  192 (243)
                      .....++..++.++|..|..-|.+++....   .+          .    -...+.+.+.+-+..+.+..|+.....+++
T Consensus       224 ~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~  303 (372)
T KOG0546|consen  224 KKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR  303 (372)
T ss_pred             hhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc
Confidence            344567778889999999988888865321   10          0    124566788999999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhh
Q 026145          193 LAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFK  238 (243)
Q Consensus       193 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  238 (243)
                      .++....+++.++..+..+.++++|++++..+....|++......+
T Consensus       304 ~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~  349 (372)
T KOG0546|consen  304 DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEEL  349 (372)
T ss_pred             cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHH
Confidence            8888999999999999999999999999999999999988765443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.91  E-value=0.25  Score=43.78  Aligned_cols=121  Identities=14%  Similarity=-0.044  Sum_probs=90.4

Q ss_pred             cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHh----c-CHHHHHHHHHHhhccCCCCchHHHHHhHHHHH
Q 026145          100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEK----A-NFSEADGFLSQAIELKPFGGIHVLYKDRCLAR  174 (243)
Q Consensus       100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~----~-~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~  174 (243)
                      ..+++.|+.++..+.....  .......+.+.+.+|.+|.+.    . ++..|+.+|.++-.....    .+.+.+|.++
T Consensus       262 ~~d~e~a~~~l~~aa~~~~--~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~----~a~~~lg~~~  335 (552)
T KOG1550|consen  262 TQDLESAIEYLKLAAESFK--KAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP----DAQYLLGVLY  335 (552)
T ss_pred             cccHHHHHHHHHHHHHHHH--HHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc----hHHHHHHHHH
Confidence            3488999999987764100  000001234677888888874    3 789999999999887655    5678889888


Q ss_pred             HHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHhccC
Q 026145          175 LTMG---NFSAALEDVREALELAPNYTEAYICQGDVFLAM----DQYDAAEKSYSTCLQID  228 (243)
Q Consensus       175 ~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~  228 (243)
                      ..-.   ++..|.++|..|..  -.+..+.++++.+|..-    -+.+.|..++.++.+..
T Consensus       336 ~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  336 ETGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             HcCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            7654   67899999999875  45788999999998753    37899999999999887

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.82  E-value=0.15  Score=32.21  Aligned_cols=65  Identities=12%  Similarity=0.025  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 026145          127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREAL  191 (243)
Q Consensus       127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al  191 (243)
                      .+......|.-++...+.++|+..+.++++..++.. ...++-.+..+|...|+|.+.+.+..+=+
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~   70 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL   70 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556667777777788888888888887766643 12233344566677777777776664433

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.80  E-value=0.45  Score=40.70  Aligned_cols=126  Identities=11%  Similarity=0.025  Sum_probs=89.6

Q ss_pred             cCCHhHHHHHHHHHh---cCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCC-chHHHHHhHHHHHH
Q 026145          100 CGTPARASEILMVLC---GIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFG-GIHVLYKDRCLARL  175 (243)
Q Consensus       100 ~~~~~~a~~~l~~~l---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~la~~~~  175 (243)
                      .|++.+|++-+....   ...|.+..-+...+...+.+|......+.|+.|...|..|.+..... ..+-...++|..|.
T Consensus       336 ~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL  415 (629)
T KOG2300|consen  336 RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYL  415 (629)
T ss_pred             hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHH
Confidence            346777766554433   33332223344677788889999999999999999999999875442 22345678899999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145          176 TMGNFSAALEDVREALELAPNY----------TEAYICQGDVFLAMDQYDAAEKSYSTCLQID  228 (243)
Q Consensus       176 ~~~~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  228 (243)
                      ..++-+.-.+.++.   +.|.+          ..+++..|...+.++++.||...+.+.++..
T Consensus       416 ~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  416 RIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            98776554444432   45542          3467788888899999999999999999876

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=95.76  E-value=0.061  Score=45.73  Aligned_cols=102  Identities=12%  Similarity=0.070  Sum_probs=68.4

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 026145          132 RKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAM  211 (243)
Q Consensus       132 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  211 (243)
                      ...+.+....|+|+.+.....-+-..-....  .+...+-..+..++++++|.....-.+...-.+++...--+..-..+
T Consensus       327 ~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~--~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l  404 (831)
T PRK15180        327 QLRSVIFSHLGYYEQAYQDISDVEKIIGTTD--STLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADAL  404 (831)
T ss_pred             HHHHHHHHHhhhHHHHHHHhhchhhhhcCCc--hHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHH
Confidence            3456667777888888777654443322221  34444556667788888888887777765555666666566666778


Q ss_pred             CCHHHHHHHHHHHhccCCCchhhh
Q 026145          212 DQYDAAEKSYSTCLQIDPSIRRSK  235 (243)
Q Consensus       212 g~~~~A~~~~~~al~~~p~~~~~~  235 (243)
                      |-+++|.-.+++.+.++|.....|
T Consensus       405 ~~~d~~~~~wk~~~~~~~~~~~g~  428 (831)
T PRK15180        405 QLFDKSYHYWKRVLLLNPETQSGW  428 (831)
T ss_pred             hHHHHHHHHHHHHhccCChhcccc
Confidence            888999999999999988654433

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.71  E-value=0.072  Score=35.12  Aligned_cols=55  Identities=16%  Similarity=0.357  Sum_probs=35.0

Q ss_pred             HHcCCHHHHHHHHHHHHHhCC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 026145          175 LTMGNFSAALEDVREALELAP---------NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP  229 (243)
Q Consensus       175 ~~~~~~~~A~~~~~~al~~~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  229 (243)
                      .+.++|..|++.+.+.+....         ....+..++|.++...|++++|+..+++++++-.
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            455666666555555553321         1234667777888888888888888888777643

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.67  E-value=0.075  Score=37.97  Aligned_cols=73  Identities=14%  Similarity=-0.009  Sum_probs=60.1

Q ss_pred             cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCC
Q 026145          100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN  179 (243)
Q Consensus       100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~  179 (243)
                      .++++++..+++..-...|       ..+..-..-|..++..|+|.+|+..+....+..+..+  ..--.++.|+..+|+
T Consensus        23 ~~d~~D~e~lLdALrvLrP-------~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p--~~kAL~A~CL~al~D   93 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRP-------NLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP--YGKALLALCLNAKGD   93 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCC-------CccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch--HHHHHHHHHHHhcCC
Confidence            3488999999988777777       6677777889999999999999999999998887755  555567888888887


Q ss_pred             HH
Q 026145          180 FS  181 (243)
Q Consensus       180 ~~  181 (243)
                      .+
T Consensus        94 p~   95 (153)
T TIGR02561        94 AE   95 (153)
T ss_pred             hH
Confidence            54

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PRK13669 hypothetical protein; Provisional

Probab=95.62  E-value=0.13  Score=32.25  Aligned_cols=70  Identities=29%  Similarity=0.469  Sum_probs=49.6

Q ss_pred             EEEEccCCccCccCHHHHHHHHHhcCCCcEEEEeeCCCCCCC---CCCeEEEecCCeEEEecCCHhHHHHHHHHHhcCCC
Q 026145           42 ELRVCTNRTCRRQGSMQILETLSSLAPPEVAVKSCGCLGRCG---AGPNLVALPDGVVVGHCGTPARASEILMVLCGIKS  118 (243)
Q Consensus        42 ~i~vC~~~~c~~~G~~~~~~~l~~~g~~~v~v~~~gc~g~c~---~~p~~~~~~~g~~~~~~~~~~~a~~~l~~~l~~~~  118 (243)
                      .|-+|.+.  ...|++.+.+.|++  -+++.|...||++.|+   ..|-+.+  +|..-... ++++..+-+.+.+..+|
T Consensus         4 iVEfC~sN--l~~G~~~~~~~Le~--dP~~dVie~gCls~CG~C~~~~FAlV--ng~~V~a~-t~eeL~~kI~~~i~e~~   76 (78)
T PRK13669          4 IVEFCVSN--LASGSQAAFEKLEK--DPNLDVLEYGCLGYCGICSEGLFALV--NGEVVEGE-TPEELVENIYAHLEENP   76 (78)
T ss_pred             eeeehhcc--hhhhHHHHHHHHHh--CCCceEEEcchhhhCcCcccCceEEE--CCeEeecC-CHHHHHHHHHHHHhhcC
Confidence            36667644  34688888888854  3578999999999877   5677655  77666655 88888777777776553

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.60  E-value=0.094  Score=34.57  Aligned_cols=59  Identities=19%  Similarity=0.271  Sum_probs=47.1

Q ss_pred             HHHHhcCHHHHHHHHHHhhccCCCCc-------hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 026145          137 AEFEKANFSEADGFLSQAIELKPFGG-------IHVLYKDRCLARLTMGNFSAALEDVREALELAP  195 (243)
Q Consensus       137 ~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  195 (243)
                      ...+.++|.+|++.+.+.+.......       ...+..++|.++...|++++|+..+++++++..
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            34678999999988888876643221       246778899999999999999999999998754

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.49  E-value=0.29  Score=42.68  Aligned_cols=101  Identities=18%  Similarity=0.041  Sum_probs=82.0

Q ss_pred             HHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHH-HHHhCCCcHHHHHHH------HH
Q 026145          134 RAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVRE-ALELAPNYTEAYICQ------GD  206 (243)
Q Consensus       134 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~l------a~  206 (243)
                      +...+...++...+......++..+|++.  .++.+++......|....++..+.. +....|++......+      +.
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  150 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPENC--PAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGR  150 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCcccc--hHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHH
Confidence            45555567888888889999999999987  8999998888877777666666655 888889887665555      88


Q ss_pred             HHHHcCCHHHHHHHHHHHhccCCCchhhhh
Q 026145          207 VFLAMDQYDAAEKSYSTCLQIDPSIRRSKS  236 (243)
Q Consensus       207 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  236 (243)
                      ....+|+..++...+.++..+.|+++++..
T Consensus       151 ~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~  180 (620)
T COG3914         151 YLKLLGRTAEAELALERAVDLLPKYPRVLG  180 (620)
T ss_pred             HHHHhccHHHHHHHHHHHHHhhhhhhhhHh
Confidence            888999999999999999999999876643

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.44  E-value=0.074  Score=46.67  Aligned_cols=75  Identities=15%  Similarity=0.177  Sum_probs=64.4

Q ss_pred             hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhh
Q 026145          163 IHVLYKDRCLARLTMGNFSAALEDVREALELAPNY------TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKS  236 (243)
Q Consensus       163 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  236 (243)
                      +..++.+-|.-+++..+|..++++|...++--|.+      +.....++.||..+.+.+.|.+.+++|-+.+|.++-...
T Consensus       353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~  432 (872)
T KOG4814|consen  353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQL  432 (872)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHH
Confidence            34677788999999999999999999999877754      456778999999999999999999999999998876554


Q ss_pred             h
Q 026145          237 F  237 (243)
Q Consensus       237 ~  237 (243)
                      +
T Consensus       433 ~  433 (872)
T KOG4814|consen  433 L  433 (872)
T ss_pred             H
Confidence            3

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.37  E-value=0.5  Score=39.45  Aligned_cols=127  Identities=8%  Similarity=-0.014  Sum_probs=96.6

Q ss_pred             HhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhc--CHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCC-
Q 026145          103 PARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKA--NFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN-  179 (243)
Q Consensus       103 ~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~-  179 (243)
                      .+.-+.+...++..+|       +...+|+.+..++.+.+  ++..-++..+++++.+|.+-  .+|..+=.+...... 
T Consensus        91 ld~eL~~~~~~L~~np-------ksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNf--h~W~YRRfV~~~~~~~  161 (421)
T KOG0529|consen   91 LDEELKYVESALKVNP-------KSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNF--HAWHYRRFVVEQAERS  161 (421)
T ss_pred             hHHHHHHHHHHHHhCc-------hhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccc--cchHHHHHHHHHHhcc
Confidence            3444556667778888       88899999999998765  47888999999999999986  677666555543332 


Q ss_pred             ---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH------cC------CHHHHHHHHHHHhccCCCchhhhhhh
Q 026145          180 ---FSAALEDVREALELAPNYTEAYICQGDVFLA------MD------QYDAAEKSYSTCLQIDPSIRRSKSFK  238 (243)
Q Consensus       180 ---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~------~g------~~~~A~~~~~~al~~~p~~~~~~~~~  238 (243)
                         ..+-+++..+++.-++.+-.+|..+..++..      .|      ....-.+....|+--+|+++.+|.+.
T Consensus       162 ~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~  235 (421)
T KOG0529|consen  162 RNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH  235 (421)
T ss_pred             cccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence               5677888899999999999999998887762      33      13345667778888899999998764

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.35  E-value=1.1  Score=35.97  Aligned_cols=115  Identities=14%  Similarity=0.001  Sum_probs=86.3

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHH-HHHHHHHHHHHHHh-----c--CHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLE-ALALRKRAEAEFEK-----A--NFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~-~~~~~~~a~~~~~~-----~--~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      +..+|...+.++...+.       .. ....+.+|..+..-     -  +...|...|.++-...  ++  .+.+.+|.+
T Consensus       128 d~~~A~~~~~~Aa~~g~-------~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~--~a~~~lg~~  196 (292)
T COG0790         128 DLVKALKYYEKAAKLGN-------VEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NP--DAQLLLGRM  196 (292)
T ss_pred             CHHHHHHHHHHHHHcCC-------hhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CH--HHHHHHHHH
Confidence            88999999999887764       22 33466677666543     1  3347899999887766  33  788889988


Q ss_pred             HHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHhccCCC
Q 026145          174 RLT----MGNFSAALEDVREALELAPNYTEAYICQGDVFLAMD---------------QYDAAEKSYSTCLQIDPS  230 (243)
Q Consensus       174 ~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~al~~~p~  230 (243)
                      |..    ..++.+|..+|.++-+...  ..+.+.++ +++..|               +...|..++.++....+.
T Consensus       197 y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  269 (292)
T COG0790         197 YEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD  269 (292)
T ss_pred             HHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence            854    4589999999999998776  88899999 666555               778888888887766544

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.33  E-value=1.1  Score=35.93  Aligned_cols=79  Identities=22%  Similarity=0.215  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026145          144 FSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYST  223 (243)
Q Consensus       144 ~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  223 (243)
                      |..-+....++++..    ...++..++..+...++++.++..+++.+..+|.+-.+|..+-..|...|+...|+..|.+
T Consensus       137 f~~WV~~~R~~l~e~----~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~  212 (280)
T COG3629         137 FDEWVLEQRRALEEL----FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQ  212 (280)
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHH
Confidence            555555555555432    2367888888899999999999999999999999999999999999999999999988888


Q ss_pred             Hhc
Q 026145          224 CLQ  226 (243)
Q Consensus       224 al~  226 (243)
                      .-.
T Consensus       213 l~~  215 (280)
T COG3629         213 LKK  215 (280)
T ss_pred             HHH
Confidence            765

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=95.31  E-value=0.64  Score=38.22  Aligned_cols=118  Identities=9%  Similarity=-0.026  Sum_probs=85.7

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHH---HHHHHcC
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRC---LARLTMG  178 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la---~~~~~~~  178 (243)
                      ..+.-+.++++++..+|       .....+...-....+..+.++....+++++..+|.+.  ..|..+-   +..+..-
T Consensus        46 ~~E~klsilerAL~~np-------~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~--~LW~~yL~~~q~~~~~f  116 (321)
T PF08424_consen   46 LAERKLSILERALKHNP-------DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSP--ELWREYLDFRQSNFASF  116 (321)
T ss_pred             HHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCh--HHHHHHHHHHHHHhccC
Confidence            45677889999998887       5555555555555677788888999999999999876  5554332   2222334


Q ss_pred             CHHHHHHHHHHHHHhCC------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145          179 NFSAALEDVREALELAP------------------NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID  228 (243)
Q Consensus       179 ~~~~A~~~~~~al~~~p------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  228 (243)
                      .++.....|.+++..-.                  .....+.++.......|..+.|+..++..++++
T Consensus       117 ~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  117 TVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             cHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence            57788888888775421                  013457778888899999999999999999986

>COG4759 Uncharacterized protein conserved in bacteria containing thioredoxin-like domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.28  E-value=0.07  Score=42.20  Aligned_cols=71  Identities=27%  Similarity=0.495  Sum_probs=56.1

Q ss_pred             cEEEEccCC----ccCccCHHHHHHHHHh----cCCCcEEEEeeCCCCCCCCCCeEEEecCCeEEEecCCHhHHHHHHHH
Q 026145           41 KELRVCTNR----TCRRQGSMQILETLSS----LAPPEVAVKSCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMV  112 (243)
Q Consensus        41 ~~i~vC~~~----~c~~~G~~~~~~~l~~----~g~~~v~v~~~gc~g~c~~~p~~~~~~~g~~~~~~~~~~~a~~~l~~  112 (243)
                      +.|+||+..    +|..-|- -+++.++.    +.++.++|=.+...|.-..+|+++..|.|..|.+. +++....++.+
T Consensus       132 RdiLVCTHgn~D~cCarfG~-P~Y~~~r~~~a~l~~~~lRvWq~SHfgGHrFAPTlidlP~GqyyG~L-d~~~~~~l~~r  209 (316)
T COG4759         132 RDILVCTHGNVDVCCARFGY-PFYQQLRAQYADLNLENLRVWQSSHFGGHRFAPTLIDLPQGQYYGHL-DPESLDSLLTR  209 (316)
T ss_pred             ceEEEecCCChhhhhhhcCc-HHHHHHHHhhhhccccceEEEEecccCccccCchhhcCCCCceeeec-CHHHHHHHHhc
Confidence            579999988    6766663 34444444    56668999999999999999999999999999999 88877777664


Q ss_pred             H
Q 026145          113 L  113 (243)
Q Consensus       113 ~  113 (243)
                      .
T Consensus       210 ~  210 (316)
T COG4759         210 T  210 (316)
T ss_pred             c
Confidence            3

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.25  E-value=0.47  Score=38.12  Aligned_cols=97  Identities=12%  Similarity=0.117  Sum_probs=72.2

Q ss_pred             HHhcCHHHHHHHHHHhhccC----CCCc--hHHHHHhHHHHHHHcC-CHHHHHHHHHHHHHh----CC---Cc-------
Q 026145          139 FEKANFSEADGFLSQAIELK----PFGG--IHVLYKDRCLARLTMG-NFSAALEDVREALEL----AP---NY-------  197 (243)
Q Consensus       139 ~~~~~~~~A~~~~~~al~~~----p~~~--~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~----~p---~~-------  197 (243)
                      .++|+++.|..++.++-...    |+..  ++..+++.|...+..+ ++++|..+++++.++    .+   ..       
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            46899999999999987654    3321  4678999999999999 999999999999987    22   11       


Q ss_pred             HHHHHHHHHHHHHcCCHH---HHHHHHHHHhccCCCchhhh
Q 026145          198 TEAYICQGDVFLAMDQYD---AAEKSYSTCLQIDPSIRRSK  235 (243)
Q Consensus       198 ~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~  235 (243)
                      ..++..++.+|...+.++   +|...++.+-...|+.+...
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~  124 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF  124 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence            246778899998888755   45555555555667766665

It is also involved in sporulation [].

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.17  E-value=0.054  Score=29.08  Aligned_cols=29  Identities=34%  Similarity=0.389  Sum_probs=16.8

Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHHHHHh
Q 026145          165 VLYKDRCLARLTMGNFSAALEDVREALEL  193 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~  193 (243)
                      +++..+|.+-+..++|++|+..|++++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            34555566666666666666666665554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.16  E-value=0.53  Score=39.22  Aligned_cols=117  Identities=19%  Similarity=0.220  Sum_probs=77.7

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHH
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFS  181 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~  181 (243)
                      ++..|.+.-.++.+..|       ....+-...+..+++.|+..++-..++.+.+..|...   .+  +.+.+.+.|+-.
T Consensus       244 dp~~Ar~~A~~a~KL~p-------dlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~---ia--~lY~~ar~gdta  311 (531)
T COG3898         244 DPASARDDALEANKLAP-------DLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD---IA--LLYVRARSGDTA  311 (531)
T ss_pred             ChHHHHHHHHHHhhcCC-------ccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH---HH--HHHHHhcCCCcH
Confidence            67777777778888877       6666777788899999999999999999999888753   21  122233333322


Q ss_pred             H-HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 026145          182 A-ALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS  230 (243)
Q Consensus       182 ~-A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  230 (243)
                      . -++-..+.-.+.|++.+..+..+..-+.-|++..|...-+.+....|.
T Consensus       312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr  361 (531)
T COG3898         312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR  361 (531)
T ss_pred             HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch
Confidence            1 122233333456777777777777777777777776666666666664

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=95.15  E-value=0.091  Score=45.17  Aligned_cols=87  Identities=15%  Similarity=-0.078  Sum_probs=69.0

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHH---hcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcC
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFE---KANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMG  178 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~  178 (243)
                      ....++..+.+++...|       .....+.+.+.++++   .|+.-.|+.....|++++|...  .+++.++.++..++
T Consensus       389 ~~~~~i~~~s~a~q~~~-------~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~--kah~~la~aL~el~  459 (758)
T KOG1310|consen  389 IVSGAISHYSRAIQYVP-------DAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQ--KAHFRLARALNELT  459 (758)
T ss_pred             HHHHHHHHHHHHhhhcc-------chhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHH--HHHHHHHHHHHHHh
Confidence            44555566666665555       556667777777776   4688899999999999999865  99999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCc
Q 026145          179 NFSAALEDVREALELAPNY  197 (243)
Q Consensus       179 ~~~~A~~~~~~al~~~p~~  197 (243)
                      ++.+|+++...+....|.+
T Consensus       460 r~~eal~~~~alq~~~Ptd  478 (758)
T KOG1310|consen  460 RYLEALSCHWALQMSFPTD  478 (758)
T ss_pred             hHHHhhhhHHHHhhcCchh
Confidence            9999999998887777854

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=95.11  E-value=0.12  Score=41.25  Aligned_cols=62  Identities=19%  Similarity=0.188  Sum_probs=52.6

Q ss_pred             HHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 026145          147 ADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLA  210 (243)
Q Consensus       147 A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  210 (243)
                      |..+|.+|+.+.|.++  ..|+.+|.+....++.-+|+-+|-+++......+.+..++...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G--~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNG--NPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBS--HHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCC--CcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            6889999999999988  9999999999999999999999999997665567888888888877

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.10  E-value=0.13  Score=46.12  Aligned_cols=107  Identities=21%  Similarity=0.327  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc--hHHHHHhHHHHHHH--cCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145          130 ALRKRAEAEFEKANFSEADGFLSQAIELKPFGG--IHVLYKDRCLARLT--MGNFSAALEDVREALELAPNYTEAYICQG  205 (243)
Q Consensus       130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~la  205 (243)
                      ....-++.++..+++.+|..-|..++.+-|.+.  .+....+.+.++..  +++|..++....-++...|....+++..+
T Consensus        55 ~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~  134 (748)
T KOG4151|consen   55 ELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRA  134 (748)
T ss_pred             HHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhh
Confidence            445668889999999999999999999888442  34566677777654  56899999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCchhhhh
Q 026145          206 DVFLAMDQYDAAEKSYSTCLQIDPSIRRSKS  236 (243)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  236 (243)
                      .+|...++.+-|++.+.-....+|.+..+..
T Consensus       135 ~~y~al~k~d~a~rdl~i~~~~~p~~~~~~e  165 (748)
T KOG4151|consen  135 RKYEALNKLDLAVRDLRIVEKMDPSNVSASE  165 (748)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence            9999999999999998888889999865543

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=95.02  E-value=0.04  Score=26.74  Aligned_cols=22  Identities=27%  Similarity=0.292  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Q 026145          200 AYICQGDVFLAMDQYDAAEKSY  221 (243)
Q Consensus       200 ~~~~la~~~~~~g~~~~A~~~~  221 (243)
                      +.+.+|.++...|++++|...+
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Confidence            3445555555555555555444

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=94.82  E-value=0.14  Score=47.78  Aligned_cols=106  Identities=15%  Similarity=0.077  Sum_probs=79.8

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHc----C---CHHHHHHHHHHHHHhCCCcHHHHHHH
Q 026145          133 KRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTM----G---NFSAALEDVREALELAPNYTEAYICQ  204 (243)
Q Consensus       133 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~----~---~~~~A~~~~~~al~~~p~~~~~~~~l  204 (243)
                      ....++...+.|++|+..|.+.-...|.-. -.++.+..|.+.+..    +   .+.+|+..|++.- -.|.-|--|...
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  558 (932)
T PRK13184        480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGK  558 (932)
T ss_pred             cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhH
Confidence            345566777899999999999888887532 136778888877643    2   4677777776643 346666678888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145          205 GDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       205 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  239 (243)
                      |.+|..+|+++|-++.|.-|++-.|++|..-...-
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (932)
T PRK13184        559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRD  593 (932)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHH
Confidence            99999999999999999999999998887665543

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=94.80  E-value=0.51  Score=38.47  Aligned_cols=133  Identities=12%  Similarity=0.112  Sum_probs=93.2

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHH---HHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcC
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAE---AEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMG  178 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~---~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~  178 (243)
                      -.++....+.+++.... +..   ...++-..-..   -....-+|..-..+|+-.....|+.   .+-.|++....+..
T Consensus       271 lI~eg~all~rA~~~~~-pGP---YqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP---vV~LNRAVAla~~~  343 (415)
T COG4941         271 LIDEGLALLDRALASRR-PGP---YQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP---VVTLNRAVALAMRE  343 (415)
T ss_pred             HHHHHHHHHHHHHHcCC-CCh---HHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC---eEeehHHHHHHHhh
Confidence            56777788888775442 222   22222111111   1223568888899999988888876   46778888888777


Q ss_pred             CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          179 NFSAALEDVREALEL--APNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       179 ~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      =...++...+-....  -..+...+-..|..+.++|+.++|...|.+++.+.++..+......+.
T Consensus       344 Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~  408 (415)
T COG4941         344 GPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRL  408 (415)
T ss_pred             hHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence            788888887766543  123455677889999999999999999999999999887766655543

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.80  E-value=0.11  Score=27.45  Aligned_cols=21  Identities=10%  Similarity=0.089  Sum_probs=10.4

Q ss_pred             HHHhHHHHHHHcCCHHHHHHH
Q 026145          166 LYKDRCLARLTMGNFSAALED  186 (243)
Q Consensus       166 ~~~~la~~~~~~~~~~~A~~~  186 (243)
                      .++.+|..+...|++++|+..
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHH
Confidence            344455555555555555555

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.80  E-value=1.1  Score=38.22  Aligned_cols=99  Identities=13%  Similarity=0.056  Sum_probs=74.9

Q ss_pred             hHHHHHHHHHHHHHHHhcC-HHHHHHHHHHhhccCCCCc-----------------------------------------
Q 026145          125 NLEALALRKRAEAEFEKAN-FSEADGFLSQAIELKPFGG-----------------------------------------  162 (243)
Q Consensus       125 ~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~-----------------------------------------  162 (243)
                      ...+..+..-|.-+.+.|. -++|+..++.++...|.+.                                         
T Consensus       376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i  455 (549)
T PF07079_consen  376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI  455 (549)
T ss_pred             HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc
Confidence            3455566666777777777 7778888887777665541                                         


Q ss_pred             ---hHHHHHhH--HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026145          163 ---IHVLYKDR--CLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTC  224 (243)
Q Consensus       163 ---~~~~~~~l--a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  224 (243)
                         ..+.-+.+  |..++..|+|.++.-+-.-..++.| ++.++..+|.++....+|++|..++...
T Consensus       456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence               01111222  4566789999999999999999999 8999999999999999999999987654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=94.73  E-value=0.12  Score=41.25  Aligned_cols=58  Identities=16%  Similarity=0.051  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          183 ALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       183 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      |..+|.+|+.+.|++...|.++|.+....|+.=+|+-+|-+++....-.+.+..++.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~   58 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQK   58 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            6889999999999999999999999999999999999999999776555666655543

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.70  E-value=0.057  Score=28.99  Aligned_cols=30  Identities=23%  Similarity=0.248  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhhccC
Q 026145          129 LALRKRAEAEFEKANFSEADGFLSQAIELK  158 (243)
Q Consensus       129 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  158 (243)
                      ..+..+|.+....++|++|+..|.+++++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            357789999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.56  E-value=0.5  Score=29.83  Aligned_cols=62  Identities=16%  Similarity=0.128  Sum_probs=49.0

Q ss_pred             HHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH---HHHHHHHcCCHHHHHHHHHHHhcc
Q 026145          166 LYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYIC---QGDVFLAMDQYDAAEKSYSTCLQI  227 (243)
Q Consensus       166 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~---la~~~~~~g~~~~A~~~~~~al~~  227 (243)
                      -....|.-++...+.++|+..++++++..++.+.-+..   +..+|...|+|++++++-.+-+.+
T Consensus         8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556777889999999999999999988877665544   457788999999998887666554

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.42  E-value=0.67  Score=38.73  Aligned_cols=102  Identities=11%  Similarity=0.062  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhhccCCC-CchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCC-C----cHHHHH
Q 026145          129 LALRKRAEAEFEKANFSEADGFLSQAIELKPF-GGIHVLYKDRCLARLTMGNFSAALEDVREALELAP-N----YTEAYI  202 (243)
Q Consensus       129 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~----~~~~~~  202 (243)
                      .+++.....+.++|-+..|.++.+-.+.++|. |+ ..+.+.+=....+.++|+=-+..++....... +    .|...+
T Consensus       104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP-~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~  182 (360)
T PF04910_consen  104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP-LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAF  182 (360)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc-chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHH
Confidence            34566677788999999999999999999998 64 33444455556788888877887777655211 1    235677


Q ss_pred             HHHHHHHHcCCH---------------HHHHHHHHHHhccCCCc
Q 026145          203 CQGDVFLAMDQY---------------DAAEKSYSTCLQIDPSI  231 (243)
Q Consensus       203 ~la~~~~~~g~~---------------~~A~~~~~~al~~~p~~  231 (243)
                      ..+.+++.+++-               ++|...+++|+...|.-
T Consensus       183 S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v  226 (360)
T PF04910_consen  183 SIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV  226 (360)
T ss_pred             HHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence            888889999888               89999999999988753

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.35  E-value=2.1  Score=35.86  Aligned_cols=100  Identities=17%  Similarity=0.097  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc--------------C------------CCCc-hHHHHHhHHHHHHHcC
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIEL--------------K------------PFGG-IHVLYKDRCLARLTMG  178 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------------~------------p~~~-~~~~~~~la~~~~~~~  178 (243)
                      .....+.+++.++..+|+++.|.++.++||=.              +            ++|. +..+.+.....+.+.|
T Consensus        38 yHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG  117 (360)
T PF04910_consen   38 YHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRG  117 (360)
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcC
Confidence            77889999999999999999999999998622              1            1111 2345566678888999


Q ss_pred             CHHHHHHHHHHHHHhCCC-cHHHHHH-HHHHHHHcCCHHHHHHHHHHHh
Q 026145          179 NFSAALEDVREALELAPN-YTEAYIC-QGDVFLAMDQYDAAEKSYSTCL  225 (243)
Q Consensus       179 ~~~~A~~~~~~al~~~p~-~~~~~~~-la~~~~~~g~~~~A~~~~~~al  225 (243)
                      -+..|+++.+-.+.++|. |+-.... +=....+.++|+--++.++...
T Consensus       118 ~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~  166 (360)
T PF04910_consen  118 CWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL  166 (360)
T ss_pred             cHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence            999999999999999998 6654333 3333356666765565555543

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=94.30  E-value=0.07  Score=42.84  Aligned_cols=76  Identities=11%  Similarity=0.159  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHh-HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKD-RCLARLTMGNFSAALEDVREALELAPNYTEAYIC  203 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  203 (243)
                      .++..|...+....+.+.|.+--..|.+++..+|.+.  +.|.. -+.-+...++++.+...+.++++.+|.+|..|..
T Consensus       105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nv--dlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e  181 (435)
T COG5191         105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNV--DLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE  181 (435)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--eeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence            5566777777777788899999999999999999988  88876 4566778999999999999999999998876553

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=94.25  E-value=0.42  Score=36.08  Aligned_cols=79  Identities=14%  Similarity=0.017  Sum_probs=59.7

Q ss_pred             HhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHH
Q 026145          140 EKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPN----YTEAYICQGDVFLAMDQYD  215 (243)
Q Consensus       140 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~  215 (243)
                      .+-.-++|...|-++-....-+ .++..+.+|..|. ..+.++++..+.+++++.+.    +++.+..|+.++..+|+++
T Consensus       118 sr~~d~~A~~~fL~~E~~~~l~-t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  118 SRFGDQEALRRFLQLEGTPELE-TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             hccCcHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            3445677888887765443322 2478888887765 77899999999999997653    4889999999999999999


Q ss_pred             HHHHH
Q 026145          216 AAEKS  220 (243)
Q Consensus       216 ~A~~~  220 (243)
                      .|.-+
T Consensus       196 ~AYiw  200 (203)
T PF11207_consen  196 QAYIW  200 (203)
T ss_pred             hhhhh
Confidence            98643

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.11  E-value=0.27  Score=26.02  Aligned_cols=30  Identities=17%  Similarity=0.144  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH--HHhccCC
Q 026145          200 AYICQGDVFLAMDQYDAAEKSYS--TCLQIDP  229 (243)
Q Consensus       200 ~~~~la~~~~~~g~~~~A~~~~~--~al~~~p  229 (243)
                      .++.+|-.+...|++++|+..++  -+..++|
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            34445555555555555555522  4444444

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.90  E-value=0.6  Score=37.32  Aligned_cols=66  Identities=30%  Similarity=0.235  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHh
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALEL  193 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  193 (243)
                      ....++..++..+...++++.+++.+++.+..+|-+-  ..|..+-..|...|+...|+..|++.-+.
T Consensus       151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E--~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDE--PAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccch--HHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            3455677888999999999999999999999999976  89999999999999999999999987764

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=93.88  E-value=0.96  Score=38.47  Aligned_cols=58  Identities=14%  Similarity=0.179  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHH
Q 026145          130 ALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREA  190 (243)
Q Consensus       130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  190 (243)
                      ....-|..++.+|+|.++.-+-.-..+++| ++  .+|..+|.|++..++|.+|..++...
T Consensus       464 n~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~--~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  464 NFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SP--QAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cH--HHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            344456678899999999998888889999 44  89999999999999999999999764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.87  E-value=1.5  Score=33.17  Aligned_cols=59  Identities=10%  Similarity=-0.010  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc----hhhhhhhhhc
Q 026145          181 SAALEDVREALELAP--NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI----RRSKSFKVSS  241 (243)
Q Consensus       181 ~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~i  241 (243)
                      ++|...|-++- -.|  ++++..+.+|..|. .-+.++|+..+.+++++.+.+    ++....++.+
T Consensus       123 ~~A~~~fL~~E-~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~  187 (203)
T PF11207_consen  123 QEALRRFLQLE-GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASI  187 (203)
T ss_pred             HHHHHHHHHHc-CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence            45555554432 223  45777777776666 455788888888888876543    4555444443

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.82  E-value=0.11  Score=25.16  Aligned_cols=24  Identities=21%  Similarity=0.009  Sum_probs=14.8

Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHH
Q 026145          165 VLYKDRCLARLTMGNFSAALEDVR  188 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~~~A~~~~~  188 (243)
                      .+..++|.++...|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            345566666666666666666554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=93.57  E-value=0.54  Score=31.86  Aligned_cols=90  Identities=17%  Similarity=0.129  Sum_probs=65.7

Q ss_pred             EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHhhccCCCCchHHH
Q 026145           98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEK-----------ANFSEADGFLSQAIELKPFGGIHVL  166 (243)
Q Consensus        98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~  166 (243)
                      ...|+.-+|.++++..+.... ...   .........|.++.+.           .-.-.+++.|.++..+.|..+  ..
T Consensus         7 ~~rGnhiKAL~iied~i~~h~-~~~---~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A--~~   80 (111)
T PF04781_consen    7 FARGNHIKALEIIEDLISRHG-EDE---SSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSA--HS   80 (111)
T ss_pred             HHccCHHHHHHHHHHHHHHcc-CCC---chHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHH--HH
Confidence            456799999999999885553 111   1124455566666433           224578899999999999965  88


Q ss_pred             HHhHHHHHHHcCCHHHHHHHHHHHHHh
Q 026145          167 YKDRCLARLTMGNFSAALEDVREALEL  193 (243)
Q Consensus       167 ~~~la~~~~~~~~~~~A~~~~~~al~~  193 (243)
                      ++.+|.-+-....|+++..-.+++|.+
T Consensus        81 L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   81 LFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            888888877778899999999988874

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=93.56  E-value=1.6  Score=30.13  Aligned_cols=93  Identities=17%  Similarity=0.122  Sum_probs=60.5

Q ss_pred             CCHhHHHHHHHHHhcCC---CCCcch--hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc-------CCCCc--hHHH
Q 026145          101 GTPARASEILMVLCGIK---SDHDAA--KNLEALALRKRAEAEFEKANFSEADGFLSQAIEL-------KPFGG--IHVL  166 (243)
Q Consensus       101 ~~~~~a~~~l~~~l~~~---~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------~p~~~--~~~~  166 (243)
                      |.+++|..-+.+++...   |..+..  .--++..+-.++..+...|+|++++..-+++|..       +.+..  -..+
T Consensus        23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaa  102 (144)
T PF12968_consen   23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAA  102 (144)
T ss_dssp             T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHH
Confidence            46677776666655221   101111  1245666777888899999999988887777743       44433  1235


Q ss_pred             HHhHHHHHHHcCCHHHHHHHHHHHHHh
Q 026145          167 YKDRCLARLTMGNFSAALEDVREALEL  193 (243)
Q Consensus       167 ~~~la~~~~~~~~~~~A~~~~~~al~~  193 (243)
                      -++++..+-.+|+.++|+..|+.+-++
T Consensus       103 Vfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen  103 VFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            578899999999999999999988754

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.55  E-value=2.6  Score=37.47  Aligned_cols=110  Identities=15%  Similarity=0.037  Sum_probs=80.8

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhc---CHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHH--
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKA---NFSEADGFLSQAIELKPFGGIHVLYKDRCLARLT--  176 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~--  176 (243)
                      +.+.|..++..+-..+.         +.+.+.+|..+....   ++..|..+|..|....-.    .+.+.+|.||..  
T Consensus       308 d~~~A~~~~~~aA~~g~---------~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~----~A~~~la~~y~~G~  374 (552)
T KOG1550|consen  308 DYEKALKLYTKAAELGN---------PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI----LAIYRLALCYELGL  374 (552)
T ss_pred             cHHHHHHHHHHHHhcCC---------chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh----HHHHHHHHHHHhCC
Confidence            67889999988876664         557788888887654   688999999999876543    678888888863  


Q ss_pred             --cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHhc
Q 026145          177 --MGNFSAALEDVREALELAPNYTEAYICQGDVFLAM-DQYDAAEKSYSTCLQ  226 (243)
Q Consensus       177 --~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~  226 (243)
                        ..+...|..++.++-+.+  ++.+.+.++..+... ++++.+...+....+
T Consensus       375 gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~  425 (552)
T KOG1550|consen  375 GVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAE  425 (552)
T ss_pred             CcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHH
Confidence              347899999999998877  466666666655433 666666555544433

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=93.46  E-value=1.2  Score=35.12  Aligned_cols=60  Identities=12%  Similarity=0.037  Sum_probs=38.1

Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026145          165 VLYKDRCLARLTMGNFSAALEDVREALELAPN------YTEAYICQGDVFLAMDQYDAAEKSYSTC  224 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~a  224 (243)
                      .....+|..|+..|+|++|+..++.+......      .......+..|+..+|+.+..+...-+.
T Consensus       179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            45556777777777777777777777554321      1345566677777777777666554443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=93.34  E-value=2.3  Score=34.14  Aligned_cols=60  Identities=20%  Similarity=0.119  Sum_probs=49.6

Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026145          165 VLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTC  224 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  224 (243)
                      ..+..-+..|...|.+.+|++..++++.++|-+...+..+-..+..+|+--++...|++.
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            344455778889999999999999999999999888999999999999877776666654

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.13  E-value=2.8  Score=36.15  Aligned_cols=130  Identities=13%  Similarity=0.109  Sum_probs=92.9

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc--------hH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG--------IH  164 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--------~~  164 (243)
                      .|.....++-++.|...|..+.+...    .....+....++|.+|...++-+.--+..+   .+.|.+.        .+
T Consensus       373 lGlys~sv~~~enAe~hf~~a~k~t~----~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a  445 (629)
T KOG2300|consen  373 LGLYSHSVNCYENAEFHFIEATKLTE----SIDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQRLEA  445 (629)
T ss_pred             HhhHhhhcchHHHHHHHHHHHHHhhh----HHHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHHHHH
Confidence            45556667789999999988876552    112355566788999998776554333333   3455432        24


Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 026145          165 VLYKDRCLARLTMGNFSAALEDVREALELAPN------YTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP  229 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  229 (243)
                      .+++..|...+..+++.+|-..+.+.++....      .+-.+..++.+....|+..++.+...-++.+..
T Consensus       446 ~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAk  516 (629)
T KOG2300|consen  446 SILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAK  516 (629)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHh
Confidence            67888899999999999999999999987521      133566788888999999999888777776643

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=92.90  E-value=3.9  Score=34.43  Aligned_cols=99  Identities=12%  Similarity=0.084  Sum_probs=78.3

Q ss_pred             HhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----C
Q 026145          140 EKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN--FSAALEDVREALELAPNYTEAYICQGDVFLAMD----Q  213 (243)
Q Consensus       140 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~  213 (243)
                      +..-.++-+.+...++..+|+.-  .+|+.+..++.+.+.  +..-++..+++++.+|.+..+|..+=.+.....    .
T Consensus        87 k~~~ld~eL~~~~~~L~~npksY--~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~  164 (421)
T KOG0529|consen   87 KQALLDEELKYVESALKVNPKSY--GAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNL  164 (421)
T ss_pred             HHHhhHHHHHHHHHHHHhCchhH--HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhccccc
Confidence            34467777888999999999965  999999999987764  688999999999999998777766554444333    3


Q ss_pred             HHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          214 YDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       214 ~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      ..+-+++..+++.-+++|-.+|.++..
T Consensus       165 ~~~El~ftt~~I~~nfSNYsaWhyRs~  191 (421)
T KOG0529|consen  165 EKEELEFTTKLINDNFSNYSAWHYRSL  191 (421)
T ss_pred             chhHHHHHHHHHhccchhhhHHHHHHH
Confidence            566678899999999999888877653

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.78  E-value=2.4  Score=31.54  Aligned_cols=66  Identities=14%  Similarity=0.146  Sum_probs=55.8

Q ss_pred             hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145          163 IHVLYKDRCLARLTMGNFSAALEDVREALELAPN---YTEAYICQGDVFLAMDQYDAAEKSYSTCLQID  228 (243)
Q Consensus       163 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  228 (243)
                      +..++..+|..|.+.|+++.|++.|.++......   ..+.++++-.+....+++......+.++-.+-
T Consensus        35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~  103 (177)
T PF10602_consen   35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI  103 (177)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            5688999999999999999999999998775432   24678888888899999999999998887654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=92.19  E-value=2.2  Score=35.81  Aligned_cols=106  Identities=14%  Similarity=0.063  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccC----CCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHH--hCC--Cc
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELK----PFGGIHVLYKDRCLARLTMGNFSAALEDVREALE--LAP--NY  197 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p--~~  197 (243)
                      ..+..|+.+...+-..++...-...+...+...    ...+.+...+.+-..|+..+.|+.|.....++.-  ...  .+
T Consensus       167 i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~  246 (493)
T KOG2581|consen  167 IAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEW  246 (493)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHH
Confidence            345567777777777888666666665555432    1222345566677888999999999988877641  111  23


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145          198 TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI  231 (243)
Q Consensus       198 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  231 (243)
                      +..++.+|.+..-+++|..|.+++-+|+...|++
T Consensus       247 ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  247 ARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             HHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            5567788999999999999999999999999983

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=92.12  E-value=0.76  Score=43.80  Aligned_cols=101  Identities=22%  Similarity=0.243  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccC--------CCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELK--------PFGGIHVLYKDRCLARLTMGNFSAALEDVREALELA---  194 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---  194 (243)
                      ..+..+..++..+...+++++|+..-.++.-+.        |+  ....|.+++...+..++...|+..+.+++.+.   
T Consensus       971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~--t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls 1048 (1236)
T KOG1839|consen  971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN--TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS 1048 (1236)
T ss_pred             hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH--HHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc
Confidence            677889999999999999999999988886543        33  34788999999999999999999999988763   


Q ss_pred             -----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145          195 -----PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID  228 (243)
Q Consensus       195 -----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  228 (243)
                           |.-.....+++.++...++++.|+.+++.|++.+
T Consensus      1049 ~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1049 SGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             cCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence                 4445567889999999999999999999998854

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=91.93  E-value=3.7  Score=35.87  Aligned_cols=73  Identities=8%  Similarity=-0.020  Sum_probs=64.7

Q ss_pred             HHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHH
Q 026145          111 MVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREA  190 (243)
Q Consensus       111 ~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  190 (243)
                      ++-+..+|       .+..+|+.+-..+..+ .+++..+.|++.+...|..+  .+|.......++.++|+.....|.++
T Consensus        10 ~~rie~nP-------~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~--r~W~~yi~~El~skdfe~VEkLF~RC   79 (656)
T KOG1914|consen   10 RERIEENP-------YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSP--RAWKLYIERELASKDFESVEKLFSRC   79 (656)
T ss_pred             HHHHhcCC-------ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCc--HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            45566777       8899999998887766 99999999999999999988  99999999999999999999999999


Q ss_pred             HHh
Q 026145          191 LEL  193 (243)
Q Consensus       191 l~~  193 (243)
                      |..
T Consensus        80 Lvk   82 (656)
T KOG1914|consen   80 LVK   82 (656)
T ss_pred             HHH
Confidence            863

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=91.92  E-value=0.39  Score=26.71  Aligned_cols=25  Identities=8%  Similarity=0.284  Sum_probs=16.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145          202 ICQGDVFLAMDQYDAAEKSYSTCLQ  226 (243)
Q Consensus       202 ~~la~~~~~~g~~~~A~~~~~~al~  226 (243)
                      +.+|.+|..+|+.+.|.+.+++.+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4566666666666666666666663

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=91.61  E-value=1.1  Score=33.71  Aligned_cols=51  Identities=14%  Similarity=0.126  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145          180 FSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI  231 (243)
Q Consensus       180 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  231 (243)
                      .+..++..++.++..| ++..+.+++.++...|+.++|..+.+++..+.|.+
T Consensus       127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~  177 (193)
T PF11846_consen  127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD  177 (193)
T ss_pred             HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence            4455666777777777 67888889999999999999999999999999944

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=91.58  E-value=0.88  Score=34.93  Aligned_cols=62  Identities=18%  Similarity=0.193  Sum_probs=52.8

Q ss_pred             HHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 026145          135 AEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYT  198 (243)
Q Consensus       135 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  198 (243)
                      ...+.+.++.++|+.....-++..|.+.  .....+-..+.-.|+|++|...++-+-.+.|++.
T Consensus         8 ~seLL~~~sL~dai~~a~~qVkakPtda--~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455           8 ISELLDDNSLQDAIGLARDQVKAKPTDA--GGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCccc--cchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            4567788999999999999999999887  7777777888889999999999999888888764

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=91.28  E-value=3.2  Score=39.20  Aligned_cols=125  Identities=14%  Similarity=0.012  Sum_probs=85.6

Q ss_pred             CCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145          101 GTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEK-------ANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus       101 ~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~-------~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      ..++.|...|++.-...|  .  +..--.+.+..|.++..+       ..+++|+..|++.-.. |.-+  -=|...|.+
T Consensus       489 ~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~  561 (932)
T PRK13184        489 KLYDQALIFYRRIRESFP--G--RKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG-VGAP--LEYLGKALV  561 (932)
T ss_pred             HHHHHHHHHHHHHhhcCC--C--cccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC-CCCc--hHHHhHHHH
Confidence            377888888877665543  1  113345677777776643       3578888888875543 4433  568889999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHH-------HHHHHHHHHcCCHHHHHHHHHHHhccCCCchhh
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAY-------ICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRS  234 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~-------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  234 (243)
                      |.++++|++-++.+.-|++..|++|..-       +.+-.+.+.  ....|..+.--++.+-|.....
T Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  627 (932)
T PRK13184        562 YQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--HRREALVFMLLALWIAPEKISS  627 (932)
T ss_pred             HHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCcccccc
Confidence            9999999999999999999999887543       333333332  2356677777788888865443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=91.27  E-value=2.7  Score=37.97  Aligned_cols=86  Identities=17%  Similarity=0.155  Sum_probs=55.4

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 026145          124 KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYIC  203 (243)
Q Consensus       124 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  203 (243)
                      ....-.++.++|..+.....|++|.++|.+.-.          .-++..|++++..|++-....    ..-|++.+.+-.
T Consensus       792 D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~----------~e~~~ecly~le~f~~LE~la----~~Lpe~s~llp~  857 (1189)
T KOG2041|consen  792 DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD----------TENQIECLYRLELFGELEVLA----RTLPEDSELLPV  857 (1189)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------hHhHHHHHHHHHhhhhHHHHH----HhcCcccchHHH
Confidence            345566788888888888888888888875421          223355666666665533322    234667677777


Q ss_pred             HHHHHHHcCCHHHHHHHHHH
Q 026145          204 QGDVFLAMDQYDAAEKSYST  223 (243)
Q Consensus       204 la~~~~~~g~~~~A~~~~~~  223 (243)
                      +|.++...|.-++|.+.|.+
T Consensus       858 ~a~mf~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  858 MADMFTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             HHHHHHhhchHHHHHHHHHh
Confidence            77777777777777666544

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=91.10  E-value=0.25  Score=40.35  Aligned_cols=81  Identities=21%  Similarity=0.070  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 026145          131 LRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLA  210 (243)
Q Consensus       131 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  210 (243)
                      ..+.+.+..+.+.+..|+..-..++..++...  .+++.++..+..+.++++|++++..+....|++....-.+..+-..
T Consensus       278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~t--ka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~  355 (372)
T KOG0546|consen  278 RRNLAAVGLKVKGRGGARFRTNEALRDERSKT--KAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK  355 (372)
T ss_pred             ccchHHhcccccCCCcceeccccccccChhhC--cHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence            44566777788889999888888888788766  8999999999999999999999999999999987765555544443


Q ss_pred             cCC
Q 026145          211 MDQ  213 (243)
Q Consensus       211 ~g~  213 (243)
                      ..+
T Consensus       356 ~~~  358 (372)
T KOG0546|consen  356 KKQ  358 (372)
T ss_pred             HHH
Confidence            333

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=90.90  E-value=3  Score=32.84  Aligned_cols=60  Identities=17%  Similarity=0.103  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHhHHHHHHHcCCHHHHHHHHHHH
Q 026145          131 LRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKDRCLARLTMGNFSAALEDVREA  190 (243)
Q Consensus       131 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~a  190 (243)
                      ...+|..|+..|+|++|+.+|+.+....-.+.    ...+...+..|+..+|+.+..+...-+.
T Consensus       181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            34567777777777777777777755433221    2355566667777777776666555443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=90.87  E-value=2.3  Score=36.65  Aligned_cols=95  Identities=13%  Similarity=0.160  Sum_probs=73.3

Q ss_pred             HHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 026145          138 EFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAA  217 (243)
Q Consensus       138 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  217 (243)
                      ....|+.-.|-.....++...|.++  .....++.+...+|+|+.|...+.-+-.+-.....+..-+-..+..+|++++|
T Consensus       299 ~~~~gd~~aas~~~~~~lr~~~~~p--~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a  376 (831)
T PRK15180        299 QLADGDIIAASQQLFAALRNQQQDP--VLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA  376 (831)
T ss_pred             HhhccCHHHHHHHHHHHHHhCCCCc--hhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence            3457899999999999999999987  77777899999999999999988766554444445555566778899999999


Q ss_pred             HHHHHHHhccCCCchhh
Q 026145          218 EKSYSTCLQIDPSIRRS  234 (243)
Q Consensus       218 ~~~~~~al~~~p~~~~~  234 (243)
                      ...-.-.+.-.-++++.
T Consensus       377 ~s~a~~~l~~eie~~ei  393 (831)
T PRK15180        377 LSTAEMMLSNEIEDEEV  393 (831)
T ss_pred             HHHHHHHhccccCChhh
Confidence            88777766655455544

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=90.66  E-value=13  Score=33.67  Aligned_cols=128  Identities=17%  Similarity=0.047  Sum_probs=86.6

Q ss_pred             HhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHH-HhcCHHHHHHHHHHhhccCCCCch----HHHHHhHHHHHHHc
Q 026145          103 PARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEF-EKANFSEADGFLSQAIELKPFGGI----HVLYKDRCLARLTM  177 (243)
Q Consensus       103 ~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~la~~~~~~  177 (243)
                      ...++.-++.++..   ........+...+.+|.+++ ...+++.|..++.+++.+...+.+    ..+.+.++.++.+.
T Consensus        37 I~~ai~CL~~~~~~---~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~  113 (608)
T PF10345_consen   37 IATAIKCLEAVLKQ---FKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKT  113 (608)
T ss_pred             HHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhc
Confidence            34456666655532   23445578889999999988 689999999999999887654332    23345667888777


Q ss_pred             CCHHHHHHHHHHHHHhCCC---c-HHHHHHH--HHHHHHcCCHHHHHHHHHHHhccC--CCchhh
Q 026145          178 GNFSAALEDVREALELAPN---Y-TEAYICQ--GDVFLAMDQYDAAEKSYSTCLQID--PSIRRS  234 (243)
Q Consensus       178 ~~~~~A~~~~~~al~~~p~---~-~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~  234 (243)
                      +... |...+++.++...+   . +...+.+  ...+...+++..|.+.++......  +.++.+
T Consensus       114 ~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~  177 (608)
T PF10345_consen  114 NPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV  177 (608)
T ss_pred             CHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence            7777 99999999876543   2 2222222  222333479999999999988765  344443

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=90.56  E-value=1.8  Score=37.65  Aligned_cols=72  Identities=18%  Similarity=0.238  Sum_probs=63.4

Q ss_pred             HHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145          152 SQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ  226 (243)
Q Consensus       152 ~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  226 (243)
                      ++-++.+|.|.  ..|+.+-.-+. .+-+++..+.|++.+...|..+.+|........+.++|+.-+..|.+++.
T Consensus        10 ~~rie~nP~di--~sw~~lire~q-t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv   81 (656)
T KOG1914|consen   10 RERIEENPYDI--DSWSQLIREAQ-TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV   81 (656)
T ss_pred             HHHHhcCCccH--HHHHHHHHHHc-cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            56688899987  88887765554 44999999999999999999999999999999999999999999999885

>PRK11619 lytic murein transglycosylase; Provisional

Probab=90.15  E-value=12  Score=34.14  Aligned_cols=119  Identities=14%  Similarity=0.017  Sum_probs=72.0

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHH
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFS  181 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~  181 (243)
                      +++.|...+........ .  ........+..+|......+..++|..++..+.....++   ...-.+.......++++
T Consensus       256 d~~~A~~~~~~~~~~~~-~--~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~---~~~e~r~r~Al~~~dw~  329 (644)
T PRK11619        256 DAENARLMIPSLVRAQK-L--NEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQST---SLLERRVRMALGTGDRR  329 (644)
T ss_pred             CHHHHHHHHHHHHHhcC-C--CHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCc---HHHHHHHHHHHHccCHH
Confidence            55666666654322221 1  111222334444544444433667777777765443332   33333344555888998


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145          182 AALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ  226 (243)
Q Consensus       182 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  226 (243)
                      .+...+...-..........+.+|.++..+|+.++|...|+++..
T Consensus       330 ~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~  374 (644)
T PRK11619        330 GLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ  374 (644)
T ss_pred             HHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            887777764333335677899999999999999999999999754

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=89.56  E-value=1.8  Score=30.85  Aligned_cols=51  Identities=20%  Similarity=0.179  Sum_probs=33.9

Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 026145          165 VLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYD  215 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  215 (243)
                      +.....+...+..|+|.-|.+..+.++..+|++..+...++.++.++|.-.
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~  121 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS  121 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence            345556666777777777777777777777877777777777777776543

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=89.41  E-value=1.4  Score=21.76  Aligned_cols=25  Identities=24%  Similarity=0.199  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHH
Q 026145          180 FSAALEDVREALELAPNYTEAYICQ  204 (243)
Q Consensus       180 ~~~A~~~~~~al~~~p~~~~~~~~l  204 (243)
                      ++.|...|++++...|.++..|...
T Consensus         3 ~~~~r~i~e~~l~~~~~~~~~W~~y   27 (33)
T smart00386        3 IERARKIYERALEKFPKSVELWLKY   27 (33)
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHHH
Confidence            3444444444444444444444433

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=89.40  E-value=4.6  Score=34.03  Aligned_cols=133  Identities=13%  Similarity=0.100  Sum_probs=70.9

Q ss_pred             ecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHhHHHHH
Q 026145           99 HCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKDRCLAR  174 (243)
Q Consensus        99 ~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~la~~~  174 (243)
                      +-+.++.|.+...+..  .| ........++.++.+|.+..-+.+|..|.+++.+|+...|++.    ...+......+-
T Consensus       221 ~n~lydqa~~lvsK~~--~p-e~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~  297 (493)
T KOG2581|consen  221 HNKLYDQADKLVSKSV--YP-EAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVE  297 (493)
T ss_pred             hhHHHHHHHHHhhccc--Cc-cccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHH
Confidence            3335666666555432  22 1122225666777788888888888888888888888888653    011222223333


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH--HHHcCCHHHHHHHHHHHhccCCCchhhhhh
Q 026145          175 LTMGNFSAALEDVREALELAPNYTEAYICQGDV--FLAMDQYDAAEKSYSTCLQIDPSIRRSKSF  237 (243)
Q Consensus       175 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  237 (243)
                      ..+|++.+-...-+..++   .....|+.|..+  ...+.++.+-++.|..-+..+....-..++
T Consensus       298 ll~geiPers~F~Qp~~~---ksL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~LivRL  359 (493)
T KOG2581|consen  298 LLLGEIPERSVFRQPGMR---KSLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTYTLIVRL  359 (493)
T ss_pred             HHcCCCcchhhhcCccHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcchHHHHH
Confidence            455666553332222221   122345555433  344556666677776666666554444333

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=89.25  E-value=7.2  Score=34.46  Aligned_cols=102  Identities=15%  Similarity=-0.011  Sum_probs=73.9

Q ss_pred             EEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHH-hhccCCCCchHHHHHh------
Q 026145           97 VGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQ-AIELKPFGGIHVLYKD------  169 (243)
Q Consensus        97 ~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~~~------  169 (243)
                      +...++...+.-.+...+..++       ..+....++|......+..-.++..+.. +....|++.  .+...      
T Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~  147 (620)
T COG3914          77 LAPLADSTLAFLAKRIPLSVNP-------ENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNA--EFLGHLIRFYQ  147 (620)
T ss_pred             ccccccchhHHHHHhhhHhcCc-------ccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchH--HHHhhHHHHHH
Confidence            3444455455556666777776       7777888888888877777777666655 888888875  44444      


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 026145          170 RCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDV  207 (243)
Q Consensus       170 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  207 (243)
                      ++.....+++..++....+++....|.++.+...+...
T Consensus       148 ~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         148 LGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            48888889999999999999999999886655444444

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=89.21  E-value=8.7  Score=29.72  Aligned_cols=33  Identities=15%  Similarity=0.029  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc
Q 026145          130 ALRKRAEAEFEKANFSEADGFLSQAIELKPFGG  162 (243)
Q Consensus       130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~  162 (243)
                      ....+-..+.-.|+|++|...++-+-.+.|++.
T Consensus        37 ~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455          37 GRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             chhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            344455667778888888888888888888764

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=89.10  E-value=2.5  Score=33.96  Aligned_cols=58  Identities=24%  Similarity=0.207  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHH
Q 026145          131 LRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREA  190 (243)
Q Consensus       131 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  190 (243)
                      +...+..+...|.+.+|+.+.++++.++|-+.  ..+..+-..+..+|+--.+...|++.
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e--~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSE--QDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcChhhh--HHHHHHHHHHHHhccchhhhhHHHHH
Confidence            44556778899999999999999999999876  88999999999999988888777654

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.05  E-value=8.6  Score=32.46  Aligned_cols=98  Identities=17%  Similarity=0.151  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccC--CCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCC--------
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELK--PFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAP--------  195 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------  195 (243)
                      ..-.++..+|.-|..-|+.+.|++.|.++-..=  ..+ ....+.++-.+-..+++|.....+..++... |        
T Consensus       148 siRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh-vInm~ln~i~VSI~~~nw~hv~sy~~~A~st-~~~~~~~~q  225 (466)
T KOG0686|consen  148 SIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH-VINMCLNLILVSIYMGNWGHVLSYISKAEST-PDANENLAQ  225 (466)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH-HHHHHHHHHHHHHhhcchhhhhhHHHHHHhC-chhhhhHHH
Confidence            335578889999999999999999999954431  122 3467788888888999999988888888653 2        


Q ss_pred             -CcHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 026145          196 -NYTEAYICQGDVFLAMDQYDAAEKSYSTCL  225 (243)
Q Consensus       196 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al  225 (243)
                       -.+.+...-|.+...+++|+.|...+-.+.
T Consensus       226 ~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  226 EVPAKLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             hcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence             113456666777888889999988886654

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.98  E-value=3.6  Score=25.83  Aligned_cols=31  Identities=23%  Similarity=0.074  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc
Q 026145          127 EALALRKRAEAEFEKANFSEADGFLSQAIEL  157 (243)
Q Consensus       127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  157 (243)
                      .+..+...|..+-+.|++.+|+.+|+++++.
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~   35 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV   35 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            4455666667777777777777777666543

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=88.98  E-value=14  Score=34.34  Aligned_cols=113  Identities=19%  Similarity=0.127  Sum_probs=82.2

Q ss_pred             CCHhHHHHHHHHHhcCCC--CCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc---hHHHHHhHHHHHH
Q 026145          101 GTPARASEILMVLCGIKS--DHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG---IHVLYKDRCLARL  175 (243)
Q Consensus       101 ~~~~~a~~~l~~~l~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~la~~~~  175 (243)
                      ..+++|..++.++...-+  .........+...-..|.+....++++.|++..+.++..-|.+.   -..++...|.+..
T Consensus       429 ~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~  508 (894)
T COG2909         429 HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAH  508 (894)
T ss_pred             cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHH
Confidence            377788777766543222  12223334556666778889999999999999999999887753   2356778899999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCC
Q 026145          176 TMGNFSAALEDVREALELAPN------YTEAYICQGDVFLAMDQ  213 (243)
Q Consensus       176 ~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~  213 (243)
                      -.|++.+|.....++.+....      ...+....+.++..+|+
T Consensus       509 ~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq  552 (894)
T COG2909         509 IRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ  552 (894)
T ss_pred             HhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH
Confidence            999999999999998877321      23455666888899993

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.96  E-value=5.9  Score=34.20  Aligned_cols=74  Identities=24%  Similarity=0.188  Sum_probs=38.6

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 026145          133 KRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMD  212 (243)
Q Consensus       133 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  212 (243)
                      ..+..+.++|-++.|+..-       . ++  ...+.+|   .+.|+.+.|.+..++     .+++..|..+|.....+|
T Consensus       300 ~i~~fL~~~G~~e~AL~~~-------~-D~--~~rFeLA---l~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g  361 (443)
T PF04053_consen  300 SIARFLEKKGYPELALQFV-------T-DP--DHRFELA---LQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQG  361 (443)
T ss_dssp             HHHHHHHHTT-HHHHHHHS-------S--H--HHHHHHH---HHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHhhc-------C-Ch--HHHhHHH---HhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcC
Confidence            3444555566666665442       1 11  3344333   345555555554322     234556777777777777


Q ss_pred             CHHHHHHHHHHH
Q 026145          213 QYDAAEKSYSTC  224 (243)
Q Consensus       213 ~~~~A~~~~~~a  224 (243)
                      +++-|++.|+++
T Consensus       362 ~~~lAe~c~~k~  373 (443)
T PF04053_consen  362 NIELAEECYQKA  373 (443)
T ss_dssp             BHHHHHHHHHHC
T ss_pred             CHHHHHHHHHhh
Confidence            777776666665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=88.66  E-value=1.4  Score=37.34  Aligned_cols=61  Identities=16%  Similarity=0.117  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-------hHHHHHhHHHHHHHcCCHHHHHHHHHHHHH
Q 026145          131 LRKRAEAEFEKANFSEADGFLSQAIELKPFGG-------IHVLYKDRCLARLTMGNFSAALEDVREALE  192 (243)
Q Consensus       131 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~  192 (243)
                      +..+..++.-.|||..|++..+.. +++....       ...+++..|.+|+.+++|.+|++.|..++.
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566777899999999987653 2222110       126788899999999999999999998873

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=88.58  E-value=1.3  Score=24.66  Aligned_cols=25  Identities=32%  Similarity=0.400  Sum_probs=22.4

Q ss_pred             HhHHHHHHHcCCHHHHHHHHHHHHH
Q 026145          168 KDRCLARLTMGNFSAALEDVREALE  192 (243)
Q Consensus       168 ~~la~~~~~~~~~~~A~~~~~~al~  192 (243)
                      +++|..|..+|+++.|.+.+++++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5689999999999999999999985

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=88.43  E-value=9.9  Score=39.16  Aligned_cols=112  Identities=16%  Similarity=0.073  Sum_probs=86.1

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhC-CC------
Q 026145          124 KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELA-PN------  196 (243)
Q Consensus       124 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~------  196 (243)
                      ....+..|.+.|.+....|.++.|....-+|.+..+.    .++..+|..+...|+-..|+..+++.+..+ |+      
T Consensus      1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~----~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~ 1741 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLP----EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYT 1741 (2382)
T ss_pred             cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccc----hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcc
Confidence            4467889999999999999999999999999888754    789999999999999999999999999654 33      


Q ss_pred             ----c------HHHHHHHHHHHHHcCCH--HHHHHHHHHHhccCCCchhhhhhhh
Q 026145          197 ----Y------TEAYICQGDVFLAMDQY--DAAEKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       197 ----~------~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~~a  239 (243)
                          .      ..+.+..+......+++  ++-+..|+.+.+++|....-+.+++
T Consensus      1742 ~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1742 DTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred             ccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence                1      12445555555566653  3346788999999996555444443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.27  E-value=5.4  Score=34.42  Aligned_cols=25  Identities=24%  Similarity=0.138  Sum_probs=12.0

Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHH
Q 026145          165 VLYKDRCLARLTMGNFSAALEDVRE  189 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~~~A~~~~~~  189 (243)
                      ..|..+|...+..|+++-|..+|++
T Consensus       348 ~~W~~Lg~~AL~~g~~~lAe~c~~k  372 (443)
T PF04053_consen  348 EKWKQLGDEALRQGNIELAEECYQK  372 (443)
T ss_dssp             HHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            3444444444444554444444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=88.23  E-value=0.99  Score=38.12  Aligned_cols=59  Identities=19%  Similarity=0.306  Sum_probs=47.0

Q ss_pred             HHhHHHHHHHcCCHHHHHHHHHHHHHhC---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145          167 YKDRCLARLTMGNFSAALEDVREALELA---------PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ  226 (243)
Q Consensus       167 ~~~la~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  226 (243)
                      ...+..++..+|+|..|++.++-. .++         +-+...++..|-+|..+++|.+|+..|...+.
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667888999999999998643 222         23456789999999999999999999998874

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=87.42  E-value=0.92  Score=22.50  Aligned_cols=29  Identities=17%  Similarity=0.066  Sum_probs=25.0

Q ss_pred             CCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          212 DQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       212 g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      |+.+.|...|++++...|.++..|..+.+
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            56789999999999999999999876654

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=86.85  E-value=2.4  Score=38.50  Aligned_cols=77  Identities=22%  Similarity=0.322  Sum_probs=41.6

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHc
Q 026145          133 KRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNY-TEAYICQGDVFLAM  211 (243)
Q Consensus       133 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~  211 (243)
                      ..+.-|...|+|+-|.++|.++=          ....--.+|.+.|+|.+|....++..  .|.. ...|...+.-+-..
T Consensus       770 ~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldeh  837 (1636)
T KOG3616|consen  770 EIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEH  837 (1636)
T ss_pred             HHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhh
Confidence            33444555566666666554431          11122344556666666666555543  2433 33455666667777


Q ss_pred             CCHHHHHHHH
Q 026145          212 DQYDAAEKSY  221 (243)
Q Consensus       212 g~~~~A~~~~  221 (243)
                      |+|.+|.+.|
T Consensus       838 gkf~eaeqly  847 (1636)
T KOG3616|consen  838 GKFAEAEQLY  847 (1636)
T ss_pred             cchhhhhhee
Confidence            8877776654

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=86.83  E-value=20  Score=31.85  Aligned_cols=106  Identities=10%  Similarity=0.017  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Q 026145          127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELA-PNYTEAYICQG  205 (243)
Q Consensus       127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la  205 (243)
                      +...|..-...-...|++....-.|++++-.=....  ..|...+.-....|+.+-|-..+..+.++. |..+..+..-+
T Consensus       296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~--efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a  373 (577)
T KOG1258|consen  296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYD--EFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA  373 (577)
T ss_pred             HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhH--HHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence            344455555556677888888888888876544433  778888777777788887777777777654 55666777777


Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCchhh
Q 026145          206 DVFLAMDQYDAAEKSYSTCLQIDPSIRRS  234 (243)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~  234 (243)
                      ..-...|++..|...+++.....|..-.+
T Consensus       374 ~f~e~~~n~~~A~~~lq~i~~e~pg~v~~  402 (577)
T KOG1258|consen  374 RFEESNGNFDDAKVILQRIESEYPGLVEV  402 (577)
T ss_pred             HHHHhhccHHHHHHHHHHHHhhCCchhhh
Confidence            77777888888888888887766665443

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=86.83  E-value=5.6  Score=28.13  Aligned_cols=60  Identities=12%  Similarity=0.061  Sum_probs=39.0

Q ss_pred             HHhHHHHH-HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145          167 YKDRCLAR-LTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ  226 (243)
Q Consensus       167 ~~~la~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  226 (243)
                      |..+|.-. ...|+-++-...+....+.+..+|..+..+|.+|.+.|+..+|.+.+.+|-+
T Consensus        88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe  148 (161)
T PF09205_consen   88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE  148 (161)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            44455444 4555555555666666655566789999999999999999999999998865

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=86.54  E-value=10  Score=31.21  Aligned_cols=90  Identities=12%  Similarity=-0.016  Sum_probs=57.7

Q ss_pred             HHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------
Q 026145          136 EAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAP--------------------  195 (243)
Q Consensus       136 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------------------  195 (243)
                      +...+..+..+-+..-..|++++|+-.  .+|..++.--  .--..+|...++++++...                    
T Consensus       192 Q~AWRERnp~~RI~~A~~ALeIN~eCA--~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~  267 (556)
T KOG3807|consen  192 QKAWRERNPPARIKAAYQALEINNECA--TAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQL  267 (556)
T ss_pred             HHHHHhcCcHHHHHHHHHHHhcCchhh--hHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhh
Confidence            344456677777777888888888855  7776665432  2335566666666664321                    


Q ss_pred             ---CcH--HHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 026145          196 ---NYT--EAYICQGDVFLAMDQYDAAEKSYSTCLQIDP  229 (243)
Q Consensus       196 ---~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  229 (243)
                         .+.  .....++.|-.++|+..+|++.++...+..|
T Consensus       268 rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p  306 (556)
T KOG3807|consen  268 RRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP  306 (556)
T ss_pred             hcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence               111  2344678888888888888888887766555

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=86.22  E-value=17  Score=32.85  Aligned_cols=93  Identities=17%  Similarity=0.237  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhhccC----------CCCch--------------HHHHHhHHHHHHHcCCHHHHHH
Q 026145          130 ALRKRAEAEFEKANFSEADGFLSQAIELK----------PFGGI--------------HVLYKDRCLARLTMGNFSAALE  185 (243)
Q Consensus       130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~----------p~~~~--------------~~~~~~la~~~~~~~~~~~A~~  185 (243)
                      .++.-|......+..+.|.++++++++.-          +..++              .......+.+.+-.+++..|..
T Consensus       303 ~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~  382 (608)
T PF10345_consen  303 VYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQ  382 (608)
T ss_pred             HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            34444555566666656666666665431          11110              1345567888889999999998


Q ss_pred             HHHHHHHhC---CC------cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026145          186 DVREALELA---PN------YTEAYICQGDVFLAMDQYDAAEKSYS  222 (243)
Q Consensus       186 ~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~~  222 (243)
                      ..+.+....   |.      .+..++..|..+...|+.+.|...|.
T Consensus       383 ~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  383 ELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            888776542   22      36789999999999999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=85.92  E-value=16  Score=34.10  Aligned_cols=98  Identities=15%  Similarity=0.062  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhhccCCC--Cc-----hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----
Q 026145          130 ALRKRAEAEFEKANFSEADGFLSQAIELKPF--GG-----IHVLYKDRCLARLTMGNFSAALEDVREALELAPNY-----  197 (243)
Q Consensus       130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----  197 (243)
                      .....++......++++|.....++...-+.  ..     .++..-..|.+....++++.|+...+.++..-|.+     
T Consensus       417 Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r  496 (894)
T COG2909         417 LVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSR  496 (894)
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhh
Confidence            3445577788889999999888877655433  11     23555667889999999999999999999987765     


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145          198 TEAYICQGDVFLAMDQYDAAEKSYSTCLQI  227 (243)
Q Consensus       198 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  227 (243)
                      ..++..+|.+..-.|++++|....+++.+.
T Consensus       497 ~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~  526 (894)
T COG2909         497 IVALSVLGEAAHIRGELTQALALMQQAEQM  526 (894)
T ss_pred             hhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence            346788899999999999999999888776

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=85.90  E-value=2.8  Score=29.94  Aligned_cols=49  Identities=16%  Similarity=0.132  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCC
Q 026145          129 LALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN  179 (243)
Q Consensus       129 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~  179 (243)
                      ......+...+..|+|.-|.++.+.++..+|++.  .+...++.++.+++.
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~--~ar~l~A~al~~lg~  119 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNE--EARQLKADALEQLGY  119 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-H--HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHHHH
Confidence            3566778889999999999999999999999987  888888887766553

>PF12854 PPR_1: PPR repeat

Probab=85.73  E-value=2.9  Score=21.54  Aligned_cols=24  Identities=17%  Similarity=0.133  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 026145          199 EAYICQGDVFLAMDQYDAAEKSYS  222 (243)
Q Consensus       199 ~~~~~la~~~~~~g~~~~A~~~~~  222 (243)
                      ..|..+-..|.+.|+.++|.+.+.
T Consensus         8 ~ty~~lI~~~Ck~G~~~~A~~l~~   31 (34)
T PF12854_consen    8 VTYNTLIDGYCKAGRVDEAFELFD   31 (34)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHH
Confidence            344444444555555555544443

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.31  E-value=13  Score=35.42  Aligned_cols=59  Identities=14%  Similarity=0.020  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREAL  191 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  191 (243)
                      +.+..|..+|....+.+...+|++.|-+|     +++  ..|..--..-.+.|.|++-+.++.-+-
T Consensus      1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDp--s~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDP--SNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred             CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCc--HHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            34567888999999999999999988664     333  456666666667777777766665554

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=85.02  E-value=5.4  Score=36.12  Aligned_cols=73  Identities=7%  Similarity=-0.022  Sum_probs=44.8

Q ss_pred             HhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 026145          140 EKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEK  219 (243)
Q Consensus       140 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  219 (243)
                      +.|+|-.-..+++..-.-+.+.....++.++|..+..+..|++|.++|.+.-.        .-+...+|+.+.+|++-..
T Consensus       772 klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE~  843 (1189)
T KOG2041|consen  772 KLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELEV  843 (1189)
T ss_pred             hhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHHH
Confidence            34555444444433222222222457888899999999999999988876532        2345677777777776443


Q ss_pred             H
Q 026145          220 S  220 (243)
Q Consensus       220 ~  220 (243)
                      .
T Consensus       844 l  844 (1189)
T KOG2041|consen  844 L  844 (1189)
T ss_pred             H
Confidence            3

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=84.97  E-value=27  Score=30.98  Aligned_cols=111  Identities=14%  Similarity=-0.013  Sum_probs=86.3

Q ss_pred             ecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCC-CCchHHHHHhHHHHHHHc
Q 026145           99 HCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKP-FGGIHVLYKDRCLARLTM  177 (243)
Q Consensus        99 ~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~la~~~~~~  177 (243)
                      ..|+++.+.-.+++.+---.       .....|...+......|+.+-|-..+..+.++.- ..+  .....-+..--..
T Consensus       309 ~~g~~~~~~~l~ercli~cA-------~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~--~i~L~~a~f~e~~  379 (577)
T KOG1258|consen  309 TLGDFSRVFILFERCLIPCA-------LYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTP--IIHLLEARFEESN  379 (577)
T ss_pred             hcccHHHHHHHHHHHHhHHh-------hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCc--HHHHHHHHHHHhh
Confidence            34567777777776654333       6677788888888888999999988888887753 333  4555556666778


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 026145          178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAE  218 (243)
Q Consensus       178 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  218 (243)
                      |++..|...+++....-|+...+-..........|+.+.+.
T Consensus       380 ~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~  420 (577)
T KOG1258|consen  380 GNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN  420 (577)
T ss_pred             ccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence            99999999999999888999888888888889999888887

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=84.67  E-value=10  Score=30.41  Aligned_cols=128  Identities=8%  Similarity=-0.051  Sum_probs=88.9

Q ss_pred             HhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHH--hcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHH------
Q 026145          103 PARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFE--KANFSEADGFLSQAIELKPFGGIHVLYKDRCLAR------  174 (243)
Q Consensus       103 ~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~------  174 (243)
                      .++-.+.++.++...|       ..-..|..+-..+-.  ..++..-+...++.++.++.|-  ..|..+-.+.      
T Consensus        90 ldneld~~~~~lk~~P-------K~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNy--H~W~YR~~vl~~ie~~  160 (328)
T COG5536          90 LDNELDFLDEALKDNP-------KNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNY--HVWSYRRWVLRTIEDL  160 (328)
T ss_pred             hhcHHHHHHHHHhcCC-------chhhhhHHHHHHHHhCCCcccchhHHHHHHHhccccccc--ceeeeEeeeeecchhh
Confidence            3445566777787787       667777666555544  3678888888999999999875  5555444333      


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH---HHHHcCC------HHHHHHHHHHHhccCCCchhhhhhhh
Q 026145          175 LTMGNFSAALEDVREALELAPNYTEAYICQGD---VFLAMDQ------YDAAEKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       175 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~---~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~~a  239 (243)
                      +.-..+..-+++-..++..++.+..+|...-.   ..+..|+      +++-+++.-.++-.+|++..+|.+.+
T Consensus       161 ~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r  234 (328)
T COG5536         161 FNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLR  234 (328)
T ss_pred             ccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHH
Confidence            33334555577778888999999888877632   2233343      56667788888889999999987764

>PF12854 PPR_1: PPR repeat

Probab=84.08  E-value=3.2  Score=21.34  Aligned_cols=25  Identities=24%  Similarity=0.200  Sum_probs=19.0

Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHH
Q 026145          165 VLYKDRCLARLTMGNFSAALEDVRE  189 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~~~A~~~~~~  189 (243)
                      ..|..+-..+.+.|+.++|.+.+++
T Consensus         8 ~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    8 VTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            4677777778888888888877764

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.94  E-value=1.7  Score=27.27  Aligned_cols=37  Identities=19%  Similarity=0.231  Sum_probs=22.0

Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHHHHH-------hCCCcHHHH
Q 026145          165 VLYKDRCLARLTMGNFSAALEDVREALE-------LAPNYTEAY  201 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~  201 (243)
                      ..+..+|.-+=+.|++++|+.+|+++++       ..|+++...
T Consensus         7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~   50 (75)
T cd02682           7 RKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRL   50 (75)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHH
Confidence            3455556666667777766666665553       456665433

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.88  E-value=18  Score=31.77  Aligned_cols=67  Identities=9%  Similarity=0.025  Sum_probs=52.5

Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHHHHHh---CCC----cHHHHHHHHHHHHHcCC-HHHHHHHHHHHhccCCCc
Q 026145          165 VLYKDRCLARLTMGNFSAALEDVREALEL---APN----YTEAYICQGDVFLAMDQ-YDAAEKSYSTCLQIDPSI  231 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~  231 (243)
                      --+..+|.++..+|+...|...|..+++.   ...    -|.+++.+|..+..+|. ..++..++.+|-....++
T Consensus       450 lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY  524 (546)
T KOG3783|consen  450 LKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY  524 (546)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence            34566799999999999999999877732   111    26789999999999988 999999999998776554

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=83.64  E-value=3.5  Score=25.21  Aligned_cols=30  Identities=37%  Similarity=0.407  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhhcc
Q 026145          128 ALALRKRAEAEFEKANFSEADGFLSQAIEL  157 (243)
Q Consensus       128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  157 (243)
                      +..+...|...-..|++++|+.+|.++++.
T Consensus         5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~   34 (69)
T PF04212_consen    5 AIELIKKAVEADEAGNYEEALELYKEAIEY   34 (69)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            445556666777778888888888777653

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=83.53  E-value=5  Score=30.18  Aligned_cols=51  Identities=18%  Similarity=0.174  Sum_probs=43.3

Q ss_pred             CHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 026145          143 NFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPN  196 (243)
Q Consensus       143 ~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  196 (243)
                      ..+..++..++.+...|+.   .++.+++.++..+|+.++|....+++..+.|.
T Consensus       126 ~l~~~~~~a~~~l~~~P~~---~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~  176 (193)
T PF11846_consen  126 MLEAYIEWAERLLRRRPDP---NVYQRYALALALLGDPEEARQWLARARRLYPA  176 (193)
T ss_pred             HHHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence            3455566777888888864   78999999999999999999999999999993

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=83.31  E-value=6.4  Score=33.43  Aligned_cols=60  Identities=13%  Similarity=-0.086  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHH
Q 026145          131 LRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALE  192 (243)
Q Consensus       131 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  192 (243)
                      .-.+..+|.+.++.+-|+..-.+.|.++|.+.  .-+...|.|+..+.+|.+|...+.-+.-
T Consensus       231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~f--rnHLrqAavfR~LeRy~eAarSamia~y  290 (569)
T PF15015_consen  231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYF--RNHLRQAAVFRRLERYSEAARSAMIADY  290 (569)
T ss_pred             HHHHHHhhhhcCCCchHHHHHhhhhhcCcchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44677889999999999999999999999976  6677789999999999999887766553

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.30  E-value=3.2  Score=26.12  Aligned_cols=31  Identities=23%  Similarity=0.301  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc
Q 026145          127 EALALRKRAEAEFEKANFSEADGFLSQAIEL  157 (243)
Q Consensus       127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  157 (243)
                      .+..+...|..+-+.|+|++|+.+|.++++.
T Consensus         5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~   35 (76)
T cd02681           5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL   35 (76)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            4455666777777788888888888887754

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.20  E-value=11  Score=32.96  Aligned_cols=85  Identities=15%  Similarity=0.003  Sum_probs=60.5

Q ss_pred             hHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHH
Q 026145          104 ARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAA  183 (243)
Q Consensus       104 ~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A  183 (243)
                      +...+.+.......|       ..+.-.+..+..+...|+.+.|+..++..+...-.....-.++.+|.++.-+.+|..|
T Consensus       250 ~~~~~~Ll~~~~~~p-------~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~a  322 (546)
T KOG3783|consen  250 EECEKALKKYRKRYP-------KGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRA  322 (546)
T ss_pred             HHHHHHhHHHHHhCC-------CCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444445555       5566666777778888888888999998887221111235678899999999999999


Q ss_pred             HHHHHHHHHhCC
Q 026145          184 LEDVREALELAP  195 (243)
Q Consensus       184 ~~~~~~al~~~p  195 (243)
                      ...+......+.
T Consensus       323 ad~~~~L~desd  334 (546)
T KOG3783|consen  323 ADSFDLLRDESD  334 (546)
T ss_pred             hhHHHHHHhhhh
Confidence            999999887664

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=83.09  E-value=18  Score=27.29  Aligned_cols=113  Identities=14%  Similarity=0.042  Sum_probs=75.6

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHH-----HhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHH
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEF-----EKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLT  176 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~  176 (243)
                      +++.|.++|..--..+        ..+...+..|..++     ..++...|++.|..+-..+  .+  .+..++|.++..
T Consensus        50 nF~~A~kv~K~nCden--------~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n--~~--~aC~~~gLl~~~  117 (248)
T KOG4014|consen   50 NFQAAVKVFKKNCDEN--------SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDAN--IP--QACRYLGLLHWN  117 (248)
T ss_pred             HHHHHHHHHHhccccc--------CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccC--CH--HHHhhhhhhhcc
Confidence            7788888887655444        34445556665544     3568999999999988744  22  677778877753


Q ss_pred             c-----C--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc------------------------CCHHHHHHHHHHHh
Q 026145          177 M-----G--NFSAALEDVREALELAPNYTEAYICQGDVFLAM------------------------DQYDAAEKSYSTCL  225 (243)
Q Consensus       177 ~-----~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------------------------g~~~~A~~~~~~al  225 (243)
                      -     +  +.+.|++++.++-.++  +..+-+.|...|..-                        .+.+.|.++--+|-
T Consensus       118 g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kAC  195 (248)
T KOG4014|consen  118 GEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKAC  195 (248)
T ss_pred             CcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHH
Confidence            2     2  3678999999987654  455666666665543                        45667777766666


Q ss_pred             ccC
Q 026145          226 QID  228 (243)
Q Consensus       226 ~~~  228 (243)
                      +++
T Consensus       196 el~  198 (248)
T KOG4014|consen  196 ELD  198 (248)
T ss_pred             hcC
Confidence            654

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.82  E-value=19  Score=26.87  Aligned_cols=112  Identities=13%  Similarity=0.046  Sum_probs=76.9

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      .+......|+...|+..|+..-...+.|.   ...-.+....+..++..|.|++-....+.. ..+.+.....+.-.+|.
T Consensus       100 ~at~~a~kgdta~AV~aFdeia~dt~~P~---~~rd~ARlraa~lLvD~gsy~dV~srvepL-a~d~n~mR~sArEALgl  175 (221)
T COG4649         100 AATLLAQKGDTAAAVAAFDEIAADTSIPQ---IGRDLARLRAAYLLVDNGSYDDVSSRVEPL-AGDGNPMRHSAREALGL  175 (221)
T ss_pred             HHHHHhhcccHHHHHHHHHHHhccCCCcc---hhhHHHHHHHHHHHhccccHHHHHHHhhhc-cCCCChhHHHHHHHHhH
Confidence            34555667799999999998765543111   111234556678889999999887666543 22222113467788999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 026145          173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFL  209 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  209 (243)
                      .-++.|++..|...|.+... +...+....+++.+..
T Consensus       176 Aa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml  211 (221)
T COG4649         176 AAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML  211 (221)
T ss_pred             HHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence            99999999999999998765 5556666666666544

>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=81.55  E-value=26  Score=31.35  Aligned_cols=57  Identities=16%  Similarity=0.025  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHH
Q 026145          128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVR  188 (243)
Q Consensus       128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~  188 (243)
                      +..++..|..+..-+..++|-++|++.+..+|++    .++..+.-+.+.|-...|...++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~   98 (578)
T PRK15490         42 SLAMLKKAEFLHDVNETERAYALYETLIAQNNDE----ARYEYARRLYNTGLAKDAQLILK   98 (578)
T ss_pred             HHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcc----hHHHHHHHHHhhhhhhHHHHHHH
Confidence            3344444555555555555555555555555552    34444555555555555544444

>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=81.44  E-value=22  Score=31.75  Aligned_cols=82  Identities=6%  Similarity=-0.004  Sum_probs=66.1

Q ss_pred             HHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 026145          137 AEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDA  216 (243)
Q Consensus       137 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  216 (243)
                      ++.+....+.+....+.-+.......  ...+..+..+-..+..++|-..|++.+..+|+  .+++..+.-+.+.|-...
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   92 (578)
T PRK15490         17 TLKQEKKLAQAVALIDSELPTEALTS--LAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKD   92 (578)
T ss_pred             HHHHHhhHHHHHHHHHHhCCccchhH--HHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhH
Confidence            34456677888888777665555433  66777788888999999999999999999998  678888999999998888


Q ss_pred             HHHHHH
Q 026145          217 AEKSYS  222 (243)
Q Consensus       217 A~~~~~  222 (243)
                      |...++
T Consensus        93 ~~~~~~   98 (578)
T PRK15490         93 AQLILK   98 (578)
T ss_pred             HHHHHH
Confidence            888777

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=81.30  E-value=11  Score=34.62  Aligned_cols=113  Identities=13%  Similarity=0.061  Sum_probs=63.6

Q ss_pred             eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHH
Q 026145           95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLAR  174 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~  174 (243)
                      ..|...|+++.|.++|.++-.               ....-.-|.+.|+|.+|..+-.+...  |+. ....|...+.-+
T Consensus       773 dhyan~~dfe~ae~lf~e~~~---------------~~dai~my~k~~kw~da~kla~e~~~--~e~-t~~~yiakaedl  834 (1636)
T KOG3616|consen  773 DHYANKGDFEIAEELFTEADL---------------FKDAIDMYGKAGKWEDAFKLAEECHG--PEA-TISLYIAKAEDL  834 (1636)
T ss_pred             HHhccchhHHHHHHHHHhcch---------------hHHHHHHHhccccHHHHHHHHHHhcC--chh-HHHHHHHhHHhH
Confidence            456677788888877765321               11122334556777777666655543  332 224455555555


Q ss_pred             HHcCCHHHHHHHHH------HHHHh-----------------CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 026145          175 LTMGNFSAALEDVR------EALEL-----------------APNY-TEAYICQGDVFLAMDQYDAAEKSYSTCL  225 (243)
Q Consensus       175 ~~~~~~~~A~~~~~------~al~~-----------------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al  225 (243)
                      -..|+|.+|.+.|-      +++.+                 .|+. .+.+..+|.-|...|+..+|...|.++-
T Consensus       835 dehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~  909 (1636)
T KOG3616|consen  835 DEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG  909 (1636)
T ss_pred             HhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence            55555555444331      12211                 2222 3567778888888888888888776654

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.29  E-value=4.2  Score=25.64  Aligned_cols=31  Identities=29%  Similarity=0.248  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc
Q 026145          127 EALALRKRAEAEFEKANFSEADGFLSQAIEL  157 (243)
Q Consensus       127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  157 (243)
                      .+..+...|...-..|+|++|+.+|.++|+.
T Consensus         5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~   35 (77)
T cd02683           5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDL   35 (77)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3445555666666777777777777766643

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=80.48  E-value=2.7  Score=32.64  Aligned_cols=94  Identities=16%  Similarity=0.170  Sum_probs=57.1

Q ss_pred             HHHhcCHHHHHHHHHHhhccC---CCCc-------hHHHHHhHHHHHHHcCCH-HHH-HHHHHHHHHh--CCCcH--HHH
Q 026145          138 EFEKANFSEADGFLSQAIELK---PFGG-------IHVLYKDRCLARLTMGNF-SAA-LEDVREALEL--APNYT--EAY  201 (243)
Q Consensus       138 ~~~~~~~~~A~~~~~~al~~~---p~~~-------~~~~~~~la~~~~~~~~~-~~A-~~~~~~al~~--~p~~~--~~~  201 (243)
                      ++..|+|+.|+++...||+.+   |+.-       +++-....+......|+. +.. ...+.....-  -|+..  ..+
T Consensus        93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~  172 (230)
T PHA02537         93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY  172 (230)
T ss_pred             eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence            457899999999999999875   3321       123344455555666652 111 2222222111  13333  345


Q ss_pred             HHHHHHHH---------HcCCHHHHHHHHHHHhccCCCc
Q 026145          202 ICQGDVFL---------AMDQYDAAEKSYSTCLQIDPSI  231 (243)
Q Consensus       202 ~~la~~~~---------~~g~~~~A~~~~~~al~~~p~~  231 (243)
                      -..|..+.         ..++...|..++++|+.++|+.
T Consensus       173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~  211 (230)
T PHA02537        173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC  211 (230)
T ss_pred             HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence            55566663         4567889999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	243
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		2e-06
1wao_1	477	Pp5 Structure Length = 477		3e-06
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		7e-06
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		2e-05
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		5e-05
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		7e-05
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		8e-05
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		3e-04
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		3e-04

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 150 FLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFL 209
           F SQAIEL P   I+  Y +R LA L    +  AL D   A+EL   Y + Y  +    +
Sbjct: 28  FYSQAIELNPSNAIY--YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85
Query: 210 AMDQYDAAEKSYSTCLQIDPSIRRSK 235
           A+ ++ AA + Y T +++ P  + +K
Sbjct: 86  ALGKFRAALRDYETVVKVKPHDKDAK 111

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 150 FLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFL 209
           F SQAIEL P   I+  Y +R LA L    +  AL D   A+EL   Y + Y  +    +
Sbjct: 35  FYSQAIELNPSNAIY--YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92
Query: 210 AMDQYDAAEKSYSTCLQIDPSIRRSK 235
           A+ ++ AA + Y T +++ P  + +K
Sbjct: 93  ALGKFRAALRDYETVVKVKPHDKDAK 118

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 145 SEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQ 204
            EA  +  +A+EL P       Y +   A    G++  A+E  ++ALEL PN  EA+   
Sbjct: 26  DEAIEYYQKALELDP-NNAEAWY-NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83
Query: 205 GDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKS 236
           G+ +     YD A + Y   L++DP+   +K 
Sbjct: 84  GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ 115

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIR 232
           A    G++  A+E  ++ALEL PN  EA+   G+ +     YD A + Y   L++DP+  
Sbjct: 18  AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77
Query: 233 RSKS 236
            +K 
Sbjct: 78  EAKQ 81

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 150 FLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFL 209
           F  +AIEL P   ++    +R  A   +GN++ A++D   A+ + P Y++AY   G    
Sbjct: 34  FYGKAIELNPANAVYFC--NRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91
Query: 210 AMDQYDAAEKSYSTCLQIDPSIRRSKS 236
           +++++  A   Y   L++DP     KS
Sbjct: 92  SLNKHVEAVAYYKKALELDPDNETYKS 118

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 150 FLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFL 209
           +  +A+EL P       Y +   A    G++  A+E  ++ALEL PN  +A+  +G+ + 
Sbjct: 31  YYQKALELDP-NNASAWY-NLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYY 88
Query: 210 AMDQYDAAEKSYSTCLQIDPSIRRSKS 236
               Y  A + Y   L++DP+  ++K 
Sbjct: 89  KQGDYQKAIEDYQKALELDPNNAKAKQ 115

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 145 SEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQ 204
            EA  +  +A+EL P       Y +   A    G++  A+E  ++ALEL PN  EA+   
Sbjct: 26  DEAIEYYQKALELYP-NNAEAWY-NLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNL 83
Query: 205 GDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKS 236
           G+ +     YD A + Y   L++ P+   +K 
Sbjct: 84  GNAYYKQGDYDEAIEYYQKALELYPNNAEAKQ 115

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 152 SQAIELKPFGGIHVLYKDR--CLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFL 209
           ++A++  P   I  LY +R  CL +L    F  AL+D    + L   + + YI +    +
Sbjct: 37  NEAVKRDPENAI--LYSNRAACLTKLM--EFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92
Query: 210 AMDQYDAAEKSYSTCLQIDPS 230
           AM ++  A+++Y   LQ+DPS
Sbjct: 93  AMREWSKAQRAYEDALQVDPS 113

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	243
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	5e-20
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	8e-20
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-19
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	1e-19
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-19
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	5e-19
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	8e-19
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	8e-19
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	1e-18
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-18
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-18
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-14
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-12
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-13
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-18
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-07
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-17
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-15
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-15
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-13
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	9e-08
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-17
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-16
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-15
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-15
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-15
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-15
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-14
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-06
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	3e-15
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-14
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-12
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-11
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	5e-14
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-14
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-05
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	8e-14
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	8e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-13
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-13
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-13
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-10
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-13
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-04
2l6j_A	111	TPR repeat-containing protein associated with HSP;	6e-13
2l6j_A	111	TPR repeat-containing protein associated with HSP;	8e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-13
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-12
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	8e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	8e-13
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-12
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-11
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-05
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	4e-12
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	6e-08
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	4e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-12
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-11
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	9e-12
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-10
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	9e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	9e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-11
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	9e-08
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-11
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-11
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	9e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-11
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	8e-11
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-11
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	7e-10
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	8e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-11
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-10
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-09
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-09
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-09
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-09
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-10
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-10
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	5e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-10
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-10
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-09
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	7e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-10
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-09
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-07
1m2d_A	110	[2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2	6e-10
4g1t_A	472	Interferon-induced protein with tetratricopeptide	8e-10
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	8e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	8e-05
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	1e-09
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-09
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-08
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-09
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-09
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	9e-09
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	7e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-09
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	9e-09
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-05
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	4e-09
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	4e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-07
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-08
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	4e-08
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	3e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	5e-08
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	4e-07
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-06
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	3e-06
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	5e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	3e-05
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	2e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	8e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	7e-05
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	7e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-04
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-04
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	5e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	6e-04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	7e-04

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 81.9 bits (203), Expect = 5e-20
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 5/118 (4%)

Query: 116 IKSDHDAAKNL---EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL 172
           +   H    ++    AL ++ +    F+K ++ +A    ++AI+  P      LY +R  
Sbjct: 1   MGHHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK--DAKLYSNRAA 58

Query: 173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
               +  F  AL+D  E ++L P + + Y  +     AM  Y  A   Y   L +D S
Sbjct: 59  CYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS 116

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 81.6 bits (202), Expect = 8e-20
 Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 2/104 (1%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED 186
            A  L+++    F    + EA     +AI   P   + V Y +R L  L M     AL D
Sbjct: 8   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALAD 65

Query: 187 VREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
            R ALEL     +A+   G   L M+ YD A  +      +   
Sbjct: 66  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 81.1 bits (201), Expect = 1e-19
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 2/104 (1%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED 186
           EA  L+     + +  NF  A  F  +AIEL P     V + +R  A   +GN++ A++D
Sbjct: 11  EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP--ANAVYFCNRAAAYSKLGNYAGAVQD 68

Query: 187 VREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
              A+ + P Y++AY   G    +++++  A   Y   L++DP 
Sbjct: 69  CERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPD 112

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 80.3 bits (199), Expect = 1e-19
 Identities = 24/104 (23%), Positives = 52/104 (50%), Gaps = 2/104 (1%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED 186
           +   L+++        N  +A    S+AI+L P    HVLY +R  A    G++  A ED
Sbjct: 3   QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH--NHVLYSNRSAAYAKKGDYQKAYED 60

Query: 187 VREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
             + ++L P++ + Y  +      +++++ A+++Y   L+ + +
Sbjct: 61  GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 104

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 81.3 bits (201), Expect = 2e-19
 Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 2/104 (1%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED 186
            A  L+ +A   F+  ++  A  F SQAIEL P     + Y +R LA L    +  AL D
Sbjct: 12  RAEELKTQANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGD 69

Query: 187 VREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
              A+EL   Y + Y  +    +A+ ++ AA + Y T +++ P 
Sbjct: 70  ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 113

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 78.8 bits (195), Expect = 5e-19
 Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 2/104 (1%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED 186
            A   + +    F+K ++  A    ++A++  P     +LY +R      +  F  AL+D
Sbjct: 12  LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN--AILYSNRAACLTKLMEFQRALDD 69

Query: 187 VREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
               + L   + + YI +    +AM ++  A+++Y   LQ+DPS
Sbjct: 70  CDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS 113

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 82.3 bits (203), Expect = 8e-19
 Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 2/104 (1%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED 186
            A  L+++    F    + EA     +AI   P   + V Y +R L  L M     AL D
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALAD 60

Query: 187 VREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
            R ALEL     +A+   G   L M+ YD A  +      +   
Sbjct: 61  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 79.4 bits (196), Expect = 8e-19
 Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 2/104 (1%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED 186
           E+  L+    A   +  +S+A    +QA+ + P     +   +R  A    G    A ED
Sbjct: 10  ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA--NPIYLSNRAAAYSASGQHEKAAED 67

Query: 187 VREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
              A  + P Y++A+   G     M  Y  A+++Y   ++ + +
Sbjct: 68  AELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 78.1 bits (193), Expect = 1e-18
 Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 2/114 (1%)

Query: 125 NLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAAL 184
           +++A   R   +  F K+++  A    ++ I+  P       Y +R  A   + +F  A+
Sbjct: 1   SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP--EDARGYSNRAAALAKLMSFPEAI 58

Query: 185 EDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFK 238
            D  +A+E  PN+  AYI +    +A+ +Y +A ++       D  +    S +
Sbjct: 59  ADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAR 112

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 81.9 bits (203), Expect = 2e-18
 Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 7/122 (5%)

Query: 116 IKSDHDAAKNL-----EALALRKRAEAEFEKANFSEADGFLSQAIELKP--FGGIHVLYK 168
           +  DH           +   L + AE       +++A       ++ +P          +
Sbjct: 217 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKE 276

Query: 169 DRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID 228
             C           A+    E L++ P+   A   + + +L  + YD A + Y    + +
Sbjct: 277 RICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336

Query: 229 PS 230
            +
Sbjct: 337 EN 338

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 80.8 bits (200), Expect = 6e-18
 Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 121 DAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNF 180
              K  E   LR +A   F+ A+++ A  FL + +E+        L + R    +  G  
Sbjct: 113 QLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV--WDAELRELRAECFIKEGEP 170

Query: 181 SAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
             A+ D++ A +L  + TEA+     ++  +  ++ +      CL++D 
Sbjct: 171 RKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 80.0 bits (198), Expect = 1e-17
 Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 2/104 (1%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED 186
           +     +  +        ++A      A++  P    ++ Y  R    L MG   AAL D
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP--DNYIAYYRRATVFLAMGKSKAALPD 59

Query: 187 VREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
           + + + L  ++T A + +G + L   + D AE  +   L+ +PS
Sbjct: 60  LTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 103

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 68.8 bits (169), Expect = 8e-14
 Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 14/125 (11%)

Query: 116 IKSDHDAAKNLEALALRK-----RAEAEFEKA-----NFSEADGFLSQAIELKPFGGIHV 165
           +K D  AA+      L K      AE +F+K      +  E     SQ ++         
Sbjct: 66  LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE----MQ 121

Query: 166 LYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCL 225
             + + L      +++AA+  + + LE+     E    + + F+   +   A        
Sbjct: 122 RLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS 181

Query: 226 QIDPS 230
           ++   
Sbjct: 182 KLKSD 186

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 14/115 (12%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
           A     RAE   ++    +A   L  A +LK        +         +G+   +L +V
Sbjct: 154 AELRELRAECFIKEGEPRKAISDLKAASKLKS--DNTEAFYKISTLYYQLGDHELSLSEV 211

Query: 188 REALELAPNYTEAY------------ICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
           RE L+L  ++   +            I   +  +   +Y  A   Y + ++ +PS
Sbjct: 212 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 266

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 2/91 (2%)

Query: 124 KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAA 183
                 +  +      +     EA    S+ ++++P        KDR  A L    +  A
Sbjct: 268 AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP--DNVNALKDRAEAYLIEEMYDEA 325

Query: 184 LEDVREALELAPNYTEAYICQGDVFLAMDQY 214
           ++D   A E   N  +           + Q 
Sbjct: 326 IQDYEAAQEHNENDQQIREGLEKAQRLLKQS 356

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 82.4 bits (204), Expect = 2e-18
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 2/104 (1%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED 186
           +     +  +        ++A      A++  P    ++ Y  R    L MG   AAL D
Sbjct: 25  DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP--DNYIAYYRRATVFLAMGKSKAALPD 82

Query: 187 VREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
           + + ++L  ++T A + +G + L   + D AE  +   L+ +PS
Sbjct: 83  LTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 82.4 bits (204), Expect = 2e-18
 Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 7/122 (5%)

Query: 116 IKSDHDAAKNL-----EALALRKRAEAEFEKANFSEADGFLSQAIELKP--FGGIHVLYK 168
           +  DH           +   L + AE       +++A       ++ +P          +
Sbjct: 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKE 299

Query: 169 DRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID 228
             C           A+    E L++ P+   A   + + +L  + YD A + Y T  + +
Sbjct: 300 RICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359

Query: 229 PS 230
            +
Sbjct: 360 EN 361

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 80.5 bits (199), Expect = 1e-17
 Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 2/109 (1%)

Query: 121 DAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNF 180
              K+ E   LR +A   F   +++ A  FL + +E+        L + R    +  G  
Sbjct: 136 QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV--WDAELRELRAECFIKEGEP 193

Query: 181 SAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
             A+ D++ A +L  + TEA+     ++  +  ++ +      CL++D 
Sbjct: 194 RKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 242

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 68.6 bits (168), Expect = 1e-13
 Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 14/125 (11%)

Query: 116 IKSDHDAAKNLEALALRK-----RAEAEFEKA-----NFSEADGFLSQAIELKPFGGIHV 165
           +K D  AA+      L K      AE +F+K      + +E     SQ I+         
Sbjct: 89  LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDE----MQ 144

Query: 166 LYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCL 225
             + + L     G+++AA+  + + LE+     E    + + F+   +   A        
Sbjct: 145 RLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS 204

Query: 226 QIDPS 230
           ++   
Sbjct: 205 KLKND 209

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 14/115 (12%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
           A     RAE   ++    +A   L  A +LK        +         +G+   +L +V
Sbjct: 177 AELRELRAECFIKEGEPRKAISDLKAASKLKN--DNTEAFYKISTLYYQLGDHELSLSEV 234

Query: 188 REALELAPNYTEAY------------ICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
           RE L+L  ++   +            I   +  +   +Y  A   Y + ++ +PS
Sbjct: 235 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 289

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 15/107 (14%), Positives = 32/107 (29%), Gaps = 2/107 (1%)

Query: 124 KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAA 183
                 +  +      +     EA    S+ ++++P        KDR  A L    +  A
Sbjct: 291 AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP--DNVNALKDRAEAYLIEEMYDEA 348

Query: 184 LEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
           ++D   A E   N  +           + Q    +      ++ +  
Sbjct: 349 IQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 11/64 (17%)

Query: 167 YKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ 226
           +    +   T   +  ++ DV           E ++  G   LA  Q   A   +   + 
Sbjct: 6   HHSSGVDLGTENLYFQSMADV-----------EKHLELGKKLLAAGQLADALSQFHAAVD 54

Query: 227 IDPS 230
            DP 
Sbjct: 55  GDPD 58

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 80.9 bits (200), Expect = 8e-18
 Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 4/108 (3%)

Query: 124 KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAA 183
           K+  ALAL+ +    F    + +A  + + A+ELK      V Y +     +++G+    
Sbjct: 2   KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE---DPVFYSNLSACYVSVGDLKKV 58

Query: 184 LEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYS-TCLQIDPS 230
           +E   +ALEL P+Y++  + +      + ++  A    S   L  D +
Sbjct: 59  VEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFN 106

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 77.1 bits (190), Expect = 2e-16
 Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 2/105 (1%)

Query: 125 NLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAAL 184
                +    A    ++ + +E   +  +A++L        +Y  R      + N+  A 
Sbjct: 267 FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS--NNSSVYYHRGQMNFILQNYDQAG 324

Query: 185 EDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           +D  +A EL P     YI    +    +++D  E  +S   +  P
Sbjct: 325 KDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP 369

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 76.3 bits (188), Expect = 3e-16
 Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 3/103 (2%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED 186
            A++L      +F K +   A   + +AIEL P   ++       L      + +     
Sbjct: 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIY-MALIMADRNDSTEYYNY 292

Query: 187 VREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
             +AL+L  N +  Y  +G +   +  YD A K +    ++DP
Sbjct: 293 FDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 73.6 bits (181), Expect = 3e-15
 Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 2/102 (1%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
           +     R +  F   N+ +A     +A EL P       Y            F       
Sbjct: 304 SSVYYHRGQMNFILQNYDQAGKDFDKAKELDP--ENIFPYIQLACLAYRENKFDDCETLF 361

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
            EA    P   E      ++    + +D A K Y   ++++ 
Sbjct: 362 SEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 72.9 bits (179), Expect = 5e-15
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 7/110 (6%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKP-FGGIH-----VLYKDRCLARL-TMGNF 180
                  AE   +K +F +A      AIEL+    GI+     ++ K   L R  T+ NF
Sbjct: 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF 431

Query: 181 SAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
             A   + +A +L P   +A I    + L  +  D A   +     +  +
Sbjct: 432 IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 51.7 bits (124), Expect = 7e-08
 Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 6/108 (5%)

Query: 116 IKSDHDAAKNLEALALRKRAEAEFEKA--NFSEADGFLSQAIELKPFGGIHVLYKDRCLA 173
           +++  D      A  + K           NF EA   L +A +L P              
Sbjct: 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP--RSEQAKIGLAQM 458

Query: 174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSY 221
           +L   +   A+    E+ +LA    E    Q   F    +     +S 
Sbjct: 459 KLQQEDIDEAITLFEESADLARTMEEKL--QAITFAEAAKVQQRIRSD 504

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 48.2 bits (115), Expect = 8e-07
 Identities = 7/55 (12%), Positives = 16/55 (29%)

Query: 177 MGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI 231
              F   L+   E  +L      +    G      +    A +     +++ P +
Sbjct: 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV 270

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 78.7 bits (195), Expect = 1e-17
 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 2/102 (1%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
           A   R   +  F K+++  A    ++ I+  P       Y +R  A   + +F  A+ D 
Sbjct: 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP--EDARGYSNRAAALAKLMSFPEAIADC 196

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
            +A+E  PN+  AYI +    +A+ +Y +A ++       D 
Sbjct: 197 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA 238

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 72.2 bits (178), Expect = 3e-15
 Identities = 15/103 (14%), Positives = 29/103 (28%), Gaps = 3/103 (2%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED 186
            A   +      ++   F EA    ++A EL           +R  A    G +  A+  
Sbjct: 4   MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKD---ITYLNNRAAAEYEKGEYETAIST 60

Query: 187 VREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           + +A+E        Y      F  +             ++   
Sbjct: 61  LNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ 103

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 71.0 bits (175), Expect = 5e-15
 Identities = 12/115 (10%), Positives = 30/115 (26%), Gaps = 10/115 (8%)

Query: 116 IKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL 175
                              A+   +  N  +          + P        +       
Sbjct: 101 YYQKSLTEHR--------TADILTKLRNAEKELKKAEAEAYVNP--EKAEEARLEGKEYF 150

Query: 176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
           T  ++  A++   E ++ AP     Y  +      +  +  A    +  ++ DP+
Sbjct: 151 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 66.4 bits (163), Expect = 2e-13
 Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 11/114 (9%)

Query: 116 IKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL 175
           +  D     N        RA AE+EK  +  A   L+ A+E      +   YK    +  
Sbjct: 34  LHKDITYLNN--------RAAAEYEKGEYETAISTLNDAVEQGR--EMRADYKVISKSFA 83

Query: 176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
            +GN    L D+++ +E        +    D+   +   +   K       ++P
Sbjct: 84  RIGNAYHKLGDLKKTIEYYQKSLTEHR-TADILTKLRNAEKELKKAEAEAYVNP 136

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 50.6 bits (122), Expect = 9e-08
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
           A     RA A  +  +F EA    ++AIE  P       Y  +  A++ +  +++ALE +
Sbjct: 173 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--NFVRAYIRKATAQIAVKEYASALETL 230

Query: 188 REALELAPNYTEAYICQG 205
             A             + 
Sbjct: 231 DAARTKDAEVNNGSSARE 248

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 75.5 bits (186), Expect = 2e-17
 Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 1/105 (0%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGI-HVLYKDRCLARLTMGNFSAALE 185
               LRK     F+  ++  A    +QA+ L        VL+++R    L + ++  A  
Sbjct: 27  SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAET 86

Query: 186 DVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
           +  +A+E      +A   +      + + D A      C+ ++P 
Sbjct: 87  EASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 75.1 bits (185), Expect = 7e-16
 Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 3/103 (2%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED 186
            ALAL       F K N  +A   L ++I L P       Y    L      N     + 
Sbjct: 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLHP---TPNSYIFLALTLADKENSQEFFKF 298

Query: 187 VREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
            ++A++L P Y   Y  +G ++  +  Y  A++ +     ++P
Sbjct: 299 FQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 74.4 bits (183), Expect = 2e-15
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 3/106 (2%)

Query: 124 KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAA 183
           +   A+ L+ R    F   NF+EA  +   AIEL P     V Y +     ++ G+    
Sbjct: 21  RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP--NEPVFYSNISACYISTGDLEKV 78

Query: 184 LEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           +E   +ALE+ P++++A + +     ++  +  A     + L ++ 
Sbjct: 79  IEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL-SVLSLNG 123

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 72.4 bits (178), Expect = 8e-15
 Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 14/117 (11%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKP--------------FGGIHVLYKDRCLA 173
                  AE   ++ +F  A      A  L+                  I      +   
Sbjct: 378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPT 437

Query: 174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
           +L    F+AA++ + +A EL P   +A I    + L M++ D A + +     +  +
Sbjct: 438 QLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 71.3 bits (175), Expect = 2e-14
 Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 2/105 (1%)

Query: 125 NLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAAL 184
           +    +    A    +K N  E   F  +A++L P       Y  R      + ++  A 
Sbjct: 273 HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP--EYPPTYYHRGQMYFILQDYKNAK 330

Query: 185 EDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           ED ++A  L P     YI    +     ++  +E  ++      P
Sbjct: 331 EDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP 375

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 70.5 bits (173), Expect = 3e-14
 Identities = 16/103 (15%), Positives = 28/103 (27%), Gaps = 2/103 (1%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
                 R +  F   ++  A     +A  L P       Y          G F+ +    
Sbjct: 310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP--ENVYPYIQLACLLYKQGKFTESEAFF 367

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
            E     P   E      ++      +D A K Y    +++  
Sbjct: 368 NETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 65.5 bits (160), Expect = 1e-12
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 143 NFSEADGFLSQAIELKP--FGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEA 200
           +    +  ++Q   L P       V  K+R     T  NF+ A++  + A+EL PN    
Sbjct: 2   SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61

Query: 201 YICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           Y      +++    +   +  +  L+I P
Sbjct: 62  YSNISACYISTGDLEKVIEFTTKALEIKP 90

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 15/115 (13%), Positives = 30/115 (26%)

Query: 116 IKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL 175
           + S+   A             +    +N+  A   LS A++               L   
Sbjct: 161 LPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTK 220

Query: 176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
           +   + + L        L  N   A    G      +    A+      + + P+
Sbjct: 221 STDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT 275

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 4/98 (4%)

Query: 124 KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAA 183
           K         +   + ++  F+ A   L++A EL P              +L M     A
Sbjct: 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP--RSEQAKIGLAQLKLQMEKIDEA 481

Query: 184 LEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSY 221
           +E   ++  LA    E    Q   F    +     ++ 
Sbjct: 482 IELFEDSAILARTMDEKL--QATTFAEAAKIQKRLRAD 517

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 178 GNFSAALEDVREALELAPN----YTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           G+      D+ +   L+P+    Y      +G+ F     ++ A K Y   +++DP
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP 56

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 73.3 bits (181), Expect = 2e-15
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 2/102 (1%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
              L   +   F+      +  F + AI+  P   +   Y +        G    A+E  
Sbjct: 33  TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP--LLAEAYSNLGNVYKERGQLQEAIEHY 90

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           R AL L P++ + YI      +A    + A ++Y + LQ +P
Sbjct: 91  RHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 72.2 bits (178), Expect = 7e-15
 Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 2/97 (2%)

Query: 133 KRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALE 192
           + A  E++  +F  A+    Q    +P      +                +      A++
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 193 LAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
             P   EAY   G+V+    Q   A + Y   L++ P
Sbjct: 62  QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 70.6 bits (174), Expect = 2e-14
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 9/114 (7%)

Query: 116 IKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL 175
           +  +H       A+     A   +E+     A     +AIEL+P       Y +   A  
Sbjct: 232 LSPNH-------AVVHGNLACVYYEQGLIDLAIDTYRRAIELQP--HFPDAYCNLANALK 282

Query: 176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
             G+ + A +    AL L P + ++     ++       + A + Y   L++ P
Sbjct: 283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 68.3 bits (168), Expect = 1e-13
 Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 9/114 (7%)

Query: 116 IKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL 175
           +  +   A       L+       E   F  A     +A+ L P     V++ +      
Sbjct: 198 LDPNFLDAYINLGNVLK-------EARIFDRAVAAYLRALSLSP--NHAVVHGNLACVYY 248

Query: 176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
             G    A++  R A+EL P++ +AY    +          AE  Y+T L++ P
Sbjct: 249 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 67.6 bits (166), Expect = 2e-13
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 2/102 (1%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
           A A         E+    EA      A+ LKP       Y +   A +  G+   A++  
Sbjct: 67  AEAYSNLGNVYKERGQLQEAIEHYRHALRLKP--DFIDGYINLAAALVAAGDMEGAVQAY 124

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
             AL+  P+        G++  A+ + + A+  Y   ++  P
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 67.2 bits (165), Expect = 4e-13
 Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 2/102 (1%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
                             EA     +AIE +P     V + +        G    A+   
Sbjct: 135 YCVRSDLGNLLKALGRLEEAKACYLKAIETQP--NFAVAWSNLGCVFNAQGEIWLAIHHF 192

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
            +A+ L PN+ +AYI  G+V      +D A  +Y   L + P
Sbjct: 193 EKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 65.6 bits (161), Expect = 1e-12
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
             A    A A  EK + +EA+   + A+ L P         +    +   GN   A+   
Sbjct: 271 PDAYCNLANALKEKGSVAEAEDCYNTALRLCP--THADSLNNLANIKREQGNIEEAVRLY 328

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           R+ALE+ P +  A+     V     +   A   Y   ++I P
Sbjct: 329 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 54.5 bits (132), Expect = 6e-09
 Identities = 8/63 (12%), Positives = 20/63 (31%)

Query: 167 YKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ 226
             +        G+F AA     +     P+ T   +    +     + D +    +  ++
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 227 IDP 229
            +P
Sbjct: 62  QNP 64

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 9/96 (9%)

Query: 116 IKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL 175
           +   H       A +L   A  + E+ N  EA     +A+E+ P       + +      
Sbjct: 300 LCPTH-------ADSLNNLANIKREQGNIEEAVRLYRKALEVFP--EFAAAHSNLASVLQ 350

Query: 176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAM 211
             G    AL   +EA+ ++P + +AY   G+    M
Sbjct: 351 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 73.6 bits (181), Expect = 3e-15
 Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 2/104 (1%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED 186
            A  L+ +A   F+  ++  A  F SQAIEL P     + Y +R LA L    +  AL D
Sbjct: 5   RAEELKTQANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGD 62

Query: 187 VREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
              A+EL   Y + Y  +    +A+ ++ AA + Y T +++ P 
Sbjct: 63  ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 106

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 67.8 bits (166), Expect = 4e-14
 Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 14/114 (12%)

Query: 130 ALRKRAEAEFEKANFSEADGFLSQAIELKP--------------FGGIHVLYKDRCLARL 175
            + ++  A  E     +A  +  Q I L                      L  +  LA  
Sbjct: 6   EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK 65

Query: 176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
              N+  A    +E L+ APN  +      ++ +   Q   A + Y   LQ++ 
Sbjct: 66  KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA 119

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 64.0 bits (156), Expect = 1e-12
 Identities = 20/111 (18%), Positives = 33/111 (29%), Gaps = 17/111 (15%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN-------- 179
              L   AE +  +    +A     + ++L+          D   A + +GN        
Sbjct: 88  VDCLEACAEMQVCRGQEKDALRMYEKILQLEA---------DNLAANIFLGNYYYLTAEQ 138

Query: 180 FSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
               LE   + L        A    G   L   +Y+ A  S    +   PS
Sbjct: 139 EKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 3/110 (2%)

Query: 121 DAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNF 180
           D    + +    + A A  +  N+ +A  F  + ++  P        +     ++  G  
Sbjct: 47  DKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP--NNVDCLEACAEMQVCRGQE 104

Query: 181 SAALEDVREALELAPNYTEAYICQGDV-FLAMDQYDAAEKSYSTCLQIDP 229
             AL    + L+L  +   A I  G+  +L  +Q     ++    L    
Sbjct: 105 KDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPT 154

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 65.8 bits (161), Expect = 5e-14
 Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 9/111 (8%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED 186
            A+A +    A +++ +F +A     +AIEL P       Y ++         F+  ++ 
Sbjct: 7   AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP--SNITFYNNKAAVYFEEKKFAECVQF 64

Query: 187 VREALELAPN-------YTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
             +A+E+            +A    G+ F   +    A + +   L     
Sbjct: 65  CEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 9/55 (16%), Positives = 21/55 (38%)

Query: 178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIR 232
            +F  A     +A+EL P+    Y  +  V+    ++    +     +++    R
Sbjct: 22  KDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR 76

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 69.8 bits (171), Expect = 5e-14
 Identities = 14/102 (13%), Positives = 25/102 (24%), Gaps = 2/102 (1%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
            +A+   +  +            L QA  L P     V        +  +      L  +
Sbjct: 276 VVAIASNSGGKQALETVQRLLPVLCQAHGLTP--QQVVAIASNGGGKQALETVQRLLPVL 333

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
            +A  L P    A         A++              + P
Sbjct: 334 CQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 375

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 67.9 bits (166), Expect = 2e-13
 Identities = 14/102 (13%), Positives = 24/102 (23%), Gaps = 2/102 (1%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
            +A+      +            L QA  L P     V        +  +      L  +
Sbjct: 344 VVAIASHDGGKQALETVQRLLPVLCQAHGLTP--EQVVAIASNGGGKQALETVQRLLPVL 401

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
            +A  L P    A         A++              + P
Sbjct: 402 CQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 443

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 67.5 bits (165), Expect = 3e-13
 Identities = 18/112 (16%), Positives = 29/112 (25%), Gaps = 5/112 (4%)

Query: 121 DAAKNL---EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM 177
            A  NL   + +A+      +            L QA  L P     V        +  +
Sbjct: 62  GAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP--QQVVAIASHDGGKQAL 119

Query: 178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
                 L  + +A  L P    A         A++   A          + P
Sbjct: 120 ETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTP 171

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 67.5 bits (165), Expect = 3e-13
 Identities = 15/102 (14%), Positives = 25/102 (24%), Gaps = 2/102 (1%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
            +A+      +            L QA  L P     V        +  +      L  +
Sbjct: 140 VVAIASHDGGKQALETVQALLPVLCQAHGLTP--EQVVAIASNGGGKQALETVQRLLPVL 197

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
            +A  L P    A    G    A++              + P
Sbjct: 198 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 239

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 65.2 bits (159), Expect = 2e-12
 Identities = 16/102 (15%), Positives = 25/102 (24%), Gaps = 2/102 (1%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
            +A+      +            L QA  L P     V        +  +      L  +
Sbjct: 378 VVAIASNGGGKQALETVQRLLPVLCQAHGLTP--EQVVAIASHDGGKQALETVQRLLPVL 435

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
            +A  L P    A    G    A++   A        L    
Sbjct: 436 CQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALT 477

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 64.4 bits (157), Expect = 3e-12
 Identities = 14/102 (13%), Positives = 24/102 (23%), Gaps = 2/102 (1%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
            +A+      +            L QA  L P     V        +  +      L  +
Sbjct: 208 VVAIASNGGGKQALETVQRLLPVLCQAHGLTP--QQVVAIASNGGGKQALETVQRLLPVL 265

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
            +A  L P    A         A++              + P
Sbjct: 266 CQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTP 307

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 61.3 bits (149), Expect = 4e-11
 Identities = 15/107 (14%), Positives = 25/107 (23%), Gaps = 4/107 (3%)

Query: 123 AKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSA 182
              L  +A R    A      +  A       + L P     V        +  +     
Sbjct: 35  TGQLLKIAKRGGVTAVEAVHAWRNA--LTGAPLNLTPEQ--VVAIASHDGGKQALETVQR 90

Query: 183 ALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
            L  + +A  L P    A         A++              + P
Sbjct: 91  LLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 137

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 16/80 (20%), Positives = 22/80 (27%), Gaps = 3/80 (3%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
            +A+      +            L QA  L P     V        R  + +  A L   
Sbjct: 412 VVAIASHDGGKQALETVQRLLPVLCQAHGLTP--QQVVAIASNGGGRPALESIVAQLSRP 469

Query: 188 REALELAPN-YTEAYICQGD 206
             AL    N +  A  C G 
Sbjct: 470 DPALAALTNDHLVALACLGG 489

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 65.4 bits (160), Expect = 8e-14
 Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 9/111 (8%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED 186
           +AL  ++     ++K +F  A     +A EL P         ++       G+++   E 
Sbjct: 3   QALKEKELGNDAYKKKDFDTALKHYDKAKELDP--TNMTYITNQAAVYFEKGDYNKCREL 60

Query: 187 VREALELAPN-------YTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
             +A+E+            +AY   G+ +   ++Y  A   Y+  L    +
Sbjct: 61  CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 11/55 (20%), Positives = 20/55 (36%)

Query: 178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIR 232
            +F  AL+   +A EL P        Q  V+     Y+   +     +++    R
Sbjct: 18  KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR 72

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 67.7 bits (166), Expect = 1e-13
 Identities = 13/105 (12%), Positives = 31/105 (29%), Gaps = 5/105 (4%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLS---QAIELKPFGGIHVLYKDRCLARLTMGNFSAAL 184
                +RA   +E A +  A   +      +           ++      +  G  S A+
Sbjct: 37  PYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATK--AKSADFEYYGKILMKKGQDSLAI 94

Query: 185 EDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           +  + A++      + Y   G  F     +  A +     ++   
Sbjct: 95  QQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT 139

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 65.8 bits (161), Expect = 6e-13
 Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 2/102 (1%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
           +       +   +K   S A      A++         +Y          GNF  A++ +
Sbjct: 74  SADFEYYGKILMKKGQDSLAIQQYQAAVDRDT--TRLDMYGQIGSYFYNKGNFPLAIQYM 131

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
            + +       + +   G  +    +Y  A+ S+   L++ P
Sbjct: 132 EKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKP 173

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 65.4 bits (160), Expect = 6e-13
 Identities = 15/103 (14%), Positives = 35/103 (33%), Gaps = 5/103 (4%)

Query: 130 ALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV-- 187
              + A+  F+  N++EA    ++    K       +Y  R +    +  +  A +D+  
Sbjct: 5   VEFRYADFLFKNNNYAEAIEVFNKLEAKKY--NSPYIYNRRAVCYYELAKYDLAQKDIET 62

Query: 188 -REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
               +      +  +   G + +   Q   A + Y   +  D 
Sbjct: 63  YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT 105

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 60.7 bits (148), Expect = 3e-11
 Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 5/105 (4%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
                +     + K NF  A  ++ + I          ++ +   A      +  A    
Sbjct: 108 LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT--TDPKVFYELGQAYYYNKEYVKADSSF 165

Query: 188 REALELAPNYTEAYICQGDVFLAMDQ---YDAAEKSYSTCLQIDP 229
            + LEL PN    Y+ +     A D       A+  Y   +++  
Sbjct: 166 VKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 13/113 (11%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN---FSAAL 184
                +  +A +    + +AD    + +ELKP   I++ Y  R  A            A 
Sbjct: 142 PKVFYELGQAYYYNKEYVKADSSFVKVLELKP--NIYIGYLWRARANAAQDPDTKQGLAK 199

Query: 185 EDVREALELAP--------NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
               + +E+             EA       +        A+ ++   L +DP
Sbjct: 200 PYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 13/105 (12%), Positives = 24/105 (22%), Gaps = 10/105 (9%)

Query: 116 IKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVL------YKD 169
           +K +        A A   +            A  +  + IE+   GG           + 
Sbjct: 171 LKPNIYIGYLWRARANAAQDPDT----KQGLAKPYYEKLIEVCAPGGAKYKDELIEANEY 226

Query: 170 RCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQY 214
                    +   A    +  L L P   +A             +
Sbjct: 227 IAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 67.9 bits (166), Expect = 2e-13
 Identities = 15/101 (14%), Positives = 40/101 (39%), Gaps = 2/101 (1%)

Query: 130 ALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVRE 189
            L  +A+  F ++ F +     ++ +E+ P+     +Y     +    G  +       +
Sbjct: 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPY--NLDVYPLHLASLHESGEKNKLYLISND 364

Query: 190 ALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
            ++  P     ++  G  +L +++   A + +S    +DP 
Sbjct: 365 LVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ 405

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 65.2 bits (159), Expect = 2e-12
 Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 5/107 (4%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL-----TMGNFSA 182
            L L +     F K++   A      A+ L      +        A L      +  + A
Sbjct: 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA 534

Query: 183 ALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           A++ + + L L+ N    +     V+L       A       L I P
Sbjct: 535 AIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 58.7 bits (142), Expect = 4e-10
 Identities = 17/121 (14%), Positives = 34/121 (28%), Gaps = 9/121 (7%)

Query: 116 IKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL 175
           +      A    A +          +    +A    + A  L    G H+ Y    +  +
Sbjct: 402 MDPQFGPAWIGFAHSFA-------IEGEHDQAISAYTTAARLFQ--GTHLPYLFLGMQHM 452

Query: 176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK 235
            +GN   A E ++ +  L           G V         A   +   L +    + ++
Sbjct: 453 QLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE 512

Query: 236 S 236
            
Sbjct: 513 K 513

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 22/147 (14%), Positives = 40/147 (27%), Gaps = 35/147 (23%)

Query: 119 DHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPF--------GGIHVLYKDR 170
             D    LEA     R +     +NF  A     +A+ +              H+L  D 
Sbjct: 191 MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADE 250

Query: 171 CLARLTMGNFS---------------------------AALEDVREALELAPNYTEAYIC 203
               +   N+S                              ED   ++      ++  +C
Sbjct: 251 EWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLC 310

Query: 204 QGDVFLAMDQYDAAEKSYSTCLQIDPS 230
           + D      ++       +  L+IDP 
Sbjct: 311 KADTLFVRSRFIDVLAITTKILEIDPY 337

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 6/108 (5%)

Query: 130 ALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVRE 189
           AL    E    + +   A+  L Q   +K    +    + +    L   NF  A E  +E
Sbjct: 169 ALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMC-YLRGQVYTNL--SNFDRAKECYKE 225

Query: 190 ALELAPNYTEAYICQGDVFLAMDQYD---AAEKSYSTCLQIDPSIRRS 234
           AL +     EA+       L     +     + +YST  + D +  RS
Sbjct: 226 ALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.5 bits (100), Expect = 7e-05
 Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 19/111 (17%)

Query: 135 AEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELA 194
           A+      +++ A   L++            L    CL +L   ++  AL  + E     
Sbjct: 124 AQVYCCTGDYARAKCLLTKEDLYNRSSACRYLA-AFCLVKL--YDWQGALNLLGETNPFR 180

Query: 195 PNYT----------------EAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
            +                       +G V+  +  +D A++ Y   L +D 
Sbjct: 181 KDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 19/102 (18%)

Query: 105 RASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKP-FGGI 163
            A  ++      +    A       A RK          +  A   L+Q + L      +
Sbjct: 500 NALLLVKKTQSNEKPWAATWANLGHAYRK-------LKMYDAAIDALNQGLLLSTNDANV 552

Query: 164 H----VLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAY 201
           H    ++Y               A+  + E+L ++PN   A 
Sbjct: 553 HTAIALVYLH-------KKIPGLAITHLHESLAISPNEIMAS 587

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 63.6 bits (155), Expect = 4e-13
 Identities = 12/101 (11%), Positives = 30/101 (29%), Gaps = 2/101 (1%)

Query: 130 ALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVRE 189
            L      +++   + +A         L  +      +      R ++G +  AL+    
Sbjct: 20  QLYALGFNQYQAGKWDDAQKIFQALCMLDHY--DARYFLGLGACRQSLGLYEQALQSYSY 77

Query: 190 ALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
              +  N         +  L +   D AE  + +   +  +
Sbjct: 78  GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 7/42 (16%), Positives = 14/42 (33%)

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
                L+ +  E     G       ++D A+K +     +D 
Sbjct: 8   AMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH 49

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 62.3 bits (152), Expect = 6e-13
 Identities = 15/95 (15%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED 186
           +    +++  + F++  + EA     Q I  +P     V Y ++ +A + +G ++ A++ 
Sbjct: 3   QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP--QNPVGYSNKAMALIKLGEYTQAIQM 60

Query: 187 VREALELAPNYTEAYICQGDVFLAMDQYDAAEKSY 221
            ++ L          I    +   ++    A  S 
Sbjct: 61  CQQGLRYTSTAEHVAIRSK-LQYRLELAQGAVGSV 94

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 7/53 (13%), Positives = 18/53 (33%)

Query: 178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
           G +  A+    + +   P     Y  +    + + +Y  A +     L+   +
Sbjct: 18  GLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 65.8 bits (161), Expect = 6e-13
 Identities = 29/126 (23%), Positives = 45/126 (35%), Gaps = 9/126 (7%)

Query: 104 ARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGI 163
           AR  +IL        +        A  L +R          + A    SQA+ ++P   +
Sbjct: 26  ARMEQILASRALTDDER-------AQLLYERGVLYDSLGLRALARNDFSQALAIRP--DM 76

Query: 164 HVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYST 223
             ++    +     GNF AA E     LEL P Y  A++ +G       +   A+     
Sbjct: 77  PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA 136

Query: 224 CLQIDP 229
             Q DP
Sbjct: 137 FYQDDP 142

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 63.5 bits (155), Expect = 4e-12
 Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 6/113 (5%)

Query: 118 SDHDAAKNLE-ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLT 176
           S+    K+   A+ L+   + E   A   +    L+             L  +R +   +
Sbjct: 1   SNTSWRKSEVLAVPLQPTLQQEVILARMEQI---LASRALTDD--ERAQLLYERGVLYDS 55

Query: 177 MGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           +G  + A  D  +AL + P+  E +   G        +DAA +++ + L++DP
Sbjct: 56  LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 108

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 16/143 (11%), Positives = 36/143 (25%), Gaps = 31/143 (21%)

Query: 116 IKSDHDAAKNLEALALRKR-----AEAEFEKA---------------------NFSEADG 149
           +   ++ A     +AL        A+ +                         +  +A  
Sbjct: 106 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKE 165

Query: 150 FLSQAIELKPFGGIHVLYKDRCLARLTM---GNFSAALEDVREALELAPNYTEAYICQGD 206
            L Q  E          +         +           D  +   LA + +E     G 
Sbjct: 166 VLKQHFEKSDK--EQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGK 223

Query: 207 VFLAMDQYDAAEKSYSTCLQIDP 229
            +L++   D+A   +   +  + 
Sbjct: 224 YYLSLGDLDSATALFKLAVANNV 246

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 50.8 bits (122), Expect = 8e-08
 Identities = 7/83 (8%), Positives = 19/83 (22%), Gaps = 2/83 (2%)

Query: 139 FEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYT 198
            E+          +    L     +           L++G+  +A    + A+    +  
Sbjct: 192 SEQTLMERLKADATDNTSLAE--HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249

Query: 199 EAYICQGDVFLAMDQYDAAEKSY 221
             +         + Q        
Sbjct: 250 VEHRYALLELSLLGQDQDDLAES 272

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 64.8 bits (159), Expect = 8e-13
 Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 5/114 (4%)

Query: 116 IKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL 175
           +        ++       R     E  ++ +A    ++AIE        + Y +      
Sbjct: 14  LVPRGSHMASMTGGQQMGRG---SEFGDYEKAAEAFTKAIEENK--EDAIPYINFANLLS 68

Query: 176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           ++     AL    +ALEL  +   AY   G+V++  + Y  A+  +   L+   
Sbjct: 69  SVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM 122

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 62.9 bits (154), Expect = 4e-12
 Identities = 15/114 (13%), Positives = 31/114 (27%), Gaps = 9/114 (7%)

Query: 116 IKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL 175
              +        A  L               A  F  +A+EL         Y       +
Sbjct: 52  ENKEDAIPYINFANLLS-------SVNELERALAFYDKALELDS--SAATAYYGAGNVYV 102

Query: 176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
               +  A +   +AL       + +   G V + ++Q   A       ++++ 
Sbjct: 103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 61.8 bits (151), Expect = 1e-11
 Identities = 16/114 (14%), Positives = 32/114 (28%), Gaps = 9/114 (7%)

Query: 116 IKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL 175
              ++     +    L        +      A  +L +A+EL              +   
Sbjct: 120 AGMENGDLFYMLGTVLV-------KLEQPKLALPYLQRAVELNE--NDTEARFQFGMCLA 170

Query: 176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
             G    AL       E  P + +A+   G  +   +  + A +     + I P
Sbjct: 171 NEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 9/99 (9%)

Query: 116 IKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL 175
           +  +   A+    + L         +    EA    +   E  P  G    + +  +   
Sbjct: 154 LNENDTEARFQFGMCLA-------NEGMLDEALSQFAAVTEQDP--GHADAFYNAGVTYA 204

Query: 176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQY 214
              N   ALE + +A+++ P++  A   +  +      +
Sbjct: 205 YKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHHH 243

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 7/109 (6%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN-------F 180
              + +     F+   +  A+ +   A+E     G  V           +G+       +
Sbjct: 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252

Query: 181 SAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           + AL+  R+AL L P     Y   G +   M  ++ A   + T L +  
Sbjct: 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 5/109 (4%)

Query: 123 AKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSA 182
            +NL+ +     AE  +   +F       S  +E  PF    +      L  L     + 
Sbjct: 19  QENLDVVV--SLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVEL--NKANE 74

Query: 183 ALEDVREALELAPNYTEAYICQGDVFLAMDQ-YDAAEKSYSTCLQIDPS 230
                 + ++L P+   ++   G  +L +    + A +  S    ++ +
Sbjct: 75  LFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT 123

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 58.1 bits (141), Expect = 3e-10
 Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 2/89 (2%)

Query: 143 NFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYI 202
              +A      A +L    G H+      L      N   A     +AL +AP       
Sbjct: 140 EHDQAMAAYFTAAQLMK--GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMH 197

Query: 203 CQGDVFLAMDQYDAAEKSYSTCLQIDPSI 231
             G V     ++  AEK +   L+   +I
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAI 226

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 12/110 (10%)

Query: 117 KSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKP-FGGIH----VLYKDRC 171
              ++   +     L        +   ++EA  +  QA+ L P     +     ++    
Sbjct: 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSL-- 282

Query: 172 LARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSY 221
                MGNF  A++    AL L  + T +    G           A    
Sbjct: 283 -----MGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 6/53 (11%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 178 GNFS-AALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           G+++  +   + E+++      +  +   +       +    K  S  ++ DP
Sbjct: 1   GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP 53

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 64.0 bits (155), Expect = 4e-12
 Identities = 20/127 (15%), Positives = 52/127 (40%), Gaps = 2/127 (1%)

Query: 105 RASEILMVLCGIKSDHDAAKNLEALALR-KRAEAEFEKANFSEADGFLSQAIELKPFGGI 163
           RASE+L  +     +   A+  +AL    + ++   ++   +  +  +   + L     +
Sbjct: 217 RASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNL 276

Query: 164 HVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYST 223
            ++Y+ + ++ L  G    + + +   ++L  ++   Y+  G V+        A  +Y T
Sbjct: 277 SIIYQIKAVSALVKGKTDESYQAINTGIDLEMSW-LNYVLLGKVYEMKGMNREAADAYLT 335

Query: 224 CLQIDPS 230
              + P 
Sbjct: 336 AFNLRPG 342

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 51.6 bits (123), Expect = 6e-08
 Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 11/100 (11%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED 186
            ++  + +A +   K    E+   ++  I+L+      + Y          G    A + 
Sbjct: 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS---WLNYVLLGKVYEMKGMNREAADA 332

Query: 187 VREALELAPNYTEAYICQGDVFL--------AMDQYDAAE 218
              A  L P     Y  +  +F          +D++ A+E
Sbjct: 333 YLTAFNLRPGANTLYWIENGIFQTSVPYVVPYLDKFLASE 372

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 43.2 bits (101), Expect = 4e-05
 Identities = 16/119 (13%), Positives = 37/119 (31%), Gaps = 11/119 (9%)

Query: 124 KNLEALALRKRAEA---EFEKANFSEADGFLSQAIELKP-FGGIH-----VLYKDRCLAR 174
                L    +A       +  + + A   L + ++  P F         V         
Sbjct: 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHP 251

Query: 175 LTMGNFSAALEDVREALELA--PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI 231
           L     +A   ++   + L    N +  Y  +    L   + D + ++ +T + ++ S 
Sbjct: 252 LDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSW 310

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 63.7 bits (154), Expect = 7e-12
 Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 9/136 (6%)

Query: 94  GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQ 153
             +    G    A  +      +  +  AA +  A  L+       ++    EA     +
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ-------QQGKLQEALMHYKE 68

Query: 154 AIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQ 213
           AI + P       Y +       M +   AL+    A+++ P + +A+     +      
Sbjct: 69  AIRISP--TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN 126

Query: 214 YDAAEKSYSTCLQIDP 229
              A  SY T L++ P
Sbjct: 127 IPEAIASYRTALKLKP 142

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 60.6 bits (146), Expect = 7e-11
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 2/102 (1%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
           A +L   A  + E+ N  EA     +A+E+ P       + +        G    AL   
Sbjct: 9   ADSLNNLANIKREQGNIEEAVRLYRKALEVFP--EFAAAHSNLASVLQQQGKLQEALMHY 66

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           +EA+ ++P + +AY   G+    M     A + Y+  +QI+P
Sbjct: 67  KEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 108

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 49.4 bits (117), Expect = 4e-07
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 2/102 (1%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
           A A         E  +   A    ++AI++ P       + +        GN   A+   
Sbjct: 77  ADAYSNMGNTLKEMQDVQGALQCYTRAIQINP--AFADAHSNLASIHKDSGNIPEAIASY 134

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           R AL+L P++ +AY         +  +   ++     + I  
Sbjct: 135 RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 62.7 bits (153), Expect = 9e-12
 Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 6/120 (5%)

Query: 116 IKSDHDAAKNL----EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGI--HVLYKD 169
           I+SD D    L    E +A R      +             +  + +    +  H    +
Sbjct: 10  IESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFE 69

Query: 170 RCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
             L RL  G+   A+     A++  P + EA+   G      +Q   A  +   CL++ P
Sbjct: 70  EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 129

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 14/104 (13%), Positives = 30/104 (28%), Gaps = 2/104 (1%)

Query: 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALE 185
            +     +      ++ +   A      A++  P       ++     +        A+ 
Sbjct: 62  RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP--KHMEAWQYLGTTQAENEQELLAIS 119

Query: 186 DVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
            +R  LEL P+   A +     F        A +     L+  P
Sbjct: 120 ALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 54.7 bits (132), Expect = 5e-09
 Identities = 21/134 (15%), Positives = 41/134 (30%), Gaps = 26/134 (19%)

Query: 120 HDAAKNLEALALRKRAEAEFEKA-----NFSEAD-----GFL--------------SQAI 155
                +L + +L    +  F  A        + D     G L              + A+
Sbjct: 185 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244

Query: 156 ELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYD 215
            ++P    ++L+               A+   R ALEL P Y  +    G   + +  + 
Sbjct: 245 SVRP--NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 302

Query: 216 AAEKSYSTCLQIDP 229
            A + +   L +  
Sbjct: 303 EAVEHFLEALNMQR 316

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 18/122 (14%), Positives = 35/122 (28%), Gaps = 27/122 (22%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKP-FGGIH----VLYKDRCLARLTMGNFSA 182
             A +     + E      A   L + +ELKP          V + +             
Sbjct: 98  MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN-------ESLQRQ 150

Query: 183 ALEDVREALELAPNYTEAYICQGD---------------VFLAMDQYDAAEKSYSTCLQI 227
           A E +R+ L   P Y        +                 L+   +   ++ +   +++
Sbjct: 151 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 210

Query: 228 DP 229
           DP
Sbjct: 211 DP 212

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 20/111 (18%), Positives = 33/111 (29%), Gaps = 13/111 (11%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
            L   K            EA     +A+EL+P  G      +  ++ + +G    A+E  
Sbjct: 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQP--GYIRSRYNLGISCINLGAHREAVEHF 308

Query: 188 REALELAPNYTEAYICQGD-----------VFLAMDQYDAAEKSYSTCLQI 227
            EAL +           G                + Q DA   + +  L  
Sbjct: 309 LEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 59.8 bits (145), Expect = 1e-11
 Identities = 14/100 (14%), Positives = 27/100 (27%), Gaps = 2/100 (2%)

Query: 130 ALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVRE 189
            +   A   + K    EA+ F         +   +++             F  A +    
Sbjct: 38  DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK--EQFQQAADLYAV 95

Query: 190 ALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           A  L  N        G   L +     A++ +   +Q   
Sbjct: 96  AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 49.0 bits (117), Expect = 9e-08
 Identities = 9/103 (8%), Positives = 26/103 (25%), Gaps = 2/103 (1%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
           +L + +         +   +   L     +     +  +Y          G    A    
Sbjct: 2   SLNITENESISTAVIDAINSGATLKDINAIPD-DMMDDIYS-YAYDFYNKGRIEEAEVFF 59

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
           R          +  +    ++   +Q+  A   Y+    +  +
Sbjct: 60  RFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 60.2 bits (147), Expect = 2e-11
 Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 21/120 (17%)

Query: 116 IKSDH-DAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKP-FGGIH----VLYKD 169
              D+   A  L  L          +   +  A   L +  E  P    +     V   +
Sbjct: 71  DAPDNVKVATVL-GLTYV-------QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN 122

Query: 170 RCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
                  +G F  A++  + AL L PN  + +      +  M +++ A   +    ++D 
Sbjct: 123 -------LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 59.4 bits (145), Expect = 3e-11
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 12/95 (12%)

Query: 140 EKANFSEADGFLSQAIELKP-FGGIH----VLYKDRCLARLTMGNFSAALEDVREALELA 194
           +   +S+A   L Q  +       +     + Y          G      E +  +L  A
Sbjct: 20  KAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVK-------TGAVDRGTELLERSLADA 72

Query: 195 PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           P+  +     G  ++ + +YD A        + +P
Sbjct: 73  PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 52.5 bits (127), Expect = 9e-09
 Identities = 10/65 (15%), Positives = 24/65 (36%)

Query: 165 VLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTC 224
           V Y+D+ ++    G +S A+  + +  +      +  +  G  ++     D   +     
Sbjct: 9   VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERS 68

Query: 225 LQIDP 229
           L   P
Sbjct: 69  LADAP 73

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 39.7 bits (94), Expect = 2e-04
 Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 19/91 (20%)

Query: 116 IKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKP-FGGIH----VLYKDR 170
               +   +    +AL            F EA      A+ L+P  G +H      Y+  
Sbjct: 105 ANPINFNVRFRLGVALD-------NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ- 156

Query: 171 CLARLTMGNFSAALEDVREALELAPNYTEAY 201
                 MG    AL   ++A EL    +   
Sbjct: 157 ------MGRHEEALPHFKKANELDEGASVEL 181

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 62.4 bits (151), Expect = 2e-11
 Identities = 15/102 (14%), Positives = 26/102 (25%), Gaps = 2/102 (1%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
            +A+      +            L QA  L P     V        +  +      L  +
Sbjct: 294 VVAIASHGGGKQALETVQRLLPVLCQAHGLTP--DQVVAIASHDGGKQALETVQRLLPVL 351

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
            +A  L P+   A    G    A++              + P
Sbjct: 352 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 393

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 60.4 bits (146), Expect = 1e-10
 Identities = 15/102 (14%), Positives = 26/102 (25%), Gaps = 2/102 (1%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
            +A+      +            L QA  L P     V        +  +      L  +
Sbjct: 226 VVAIASHDGGKQALETMQRLLPVLCQAHGLPP--DQVVAIASNIGGKQALETVQRLLPVL 283

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
            +A  L P+   A    G    A++              + P
Sbjct: 284 CQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTP 325

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 56.2 bits (135), Expect = 2e-09
 Identities = 14/102 (13%), Positives = 25/102 (24%), Gaps = 2/102 (1%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
            +A+      +            L QA  L P     V        +  +      L  +
Sbjct: 599 VVAIASNIGGKQALETVQRLLPVLCQAHGLTP--AQVVAIASHDGGKQALETVQRLLPVL 656

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
            +A  L P+   A    G    A++              +  
Sbjct: 657 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQ 698

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.4 bits (133), Expect = 4e-09
 Identities = 14/102 (13%), Positives = 25/102 (24%), Gaps = 2/102 (1%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
            +A+      +            L QA  L       V        +  +      L  +
Sbjct: 667 VVAIASNGGGKQALETVQRLLPVLCQAHGLTQ--EQVVAIASNNGGKQALETVQRLLPVL 724

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
            +A  L P+   A    G    A++              + P
Sbjct: 725 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 766

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.0 bits (132), Expect = 6e-09
 Identities = 15/106 (14%), Positives = 27/106 (25%), Gaps = 2/106 (1%)

Query: 124 KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAA 183
              + +A+      +   A        L QA  L P     V        +  +      
Sbjct: 493 TPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTP--DQVVAIASNGGGKQALETVQRL 550

Query: 184 LEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           L  + +A  L P+   A    G    A++              +  
Sbjct: 551 LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQ 596

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.7 bits (131), Expect = 7e-09
 Identities = 15/102 (14%), Positives = 27/102 (26%), Gaps = 2/102 (1%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
            +A+      +       +    L QA  L P     V        +  +      L  +
Sbjct: 463 VVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQ--VVAIASNIGGKQALATVQRLLPVL 520

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
            +A  L P+   A    G    A++              + P
Sbjct: 521 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 562

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.3 bits (130), Expect = 1e-08
 Identities = 13/103 (12%), Positives = 27/103 (26%), Gaps = 2/103 (1%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED 186
           + + + KR      +A  +  +      + L P     V        +  +      L  
Sbjct: 157 QLVKIAKRGGVTAMEAVHASRNALTGAPLNLTP--AQVVAIASNNGGKQALETVQRLLPV 214

Query: 187 VREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           + +A  L P    A         A++              + P
Sbjct: 215 LCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPP 257

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.3 bits (125), Expect = 5e-08
 Identities = 13/102 (12%), Positives = 23/102 (22%), Gaps = 2/102 (1%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
            +A+      +            L QA  L P     V        +  +      L  +
Sbjct: 531 VVAIASNGGGKQALETVQRLLPVLCQAHGLTP--DQVVAIASNGGGKQALETVQRLLPVL 588

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
            +A  L      A         A++              + P
Sbjct: 589 CQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTP 630

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.3 bits (125), Expect = 5e-08
 Identities = 14/102 (13%), Positives = 26/102 (25%), Gaps = 3/102 (2%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
            +A+      +            L QA  L P     V+       +  +      L  +
Sbjct: 362 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPD---QVVAIASNGGKQALETVQRLLPVL 418

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
            +A  L P+   A         A++              + P
Sbjct: 419 CQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTP 460

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.9 bits (103), Expect = 3e-05
 Identities = 15/106 (14%), Positives = 25/106 (23%), Gaps = 5/106 (4%)

Query: 124 KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAA 183
             + A+A     +A             L QA  L P     V        +  +      
Sbjct: 394 DQVVAIASNGGKQAL---ETVQRLLPVLCQAHGLTP--DQVVAIASHDGGKQALETVQRL 448

Query: 184 LEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           L  + +   L P    A         A++              + P
Sbjct: 449 LPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTP 494

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.7 bits (100), Expect = 6e-05
 Identities = 14/116 (12%), Positives = 27/116 (23%), Gaps = 9/116 (7%)

Query: 115 GIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLAR 174
           G+  +         +A+      +            L QA  L P     V        +
Sbjct: 695 GLTQEQ-------VVAIASNNGGKQALETVQRLLPVLCQAHGLTP--DQVVAIASNGGGK 745

Query: 175 LTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
             +      L  + +A  L P    A         A++              +  +
Sbjct: 746 QALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLA 801

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 60.2 bits (147), Expect = 2e-11
 Identities = 20/118 (16%), Positives = 34/118 (28%), Gaps = 18/118 (15%)

Query: 116 IKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIH----VLYKDRC 171
           +   +        L                +A+  L QA+ L+    I      LY    
Sbjct: 113 VNPRYAPLHLQRGLVYA-------LLGERDKAEASLKQALALEDTPEIRSALAELYLS-- 163

Query: 172 LARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
                MG    AL    +ALE AP   +  +      L   + + A ++ +       
Sbjct: 164 -----MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 58.7 bits (143), Expect = 8e-11
 Identities = 24/150 (16%), Positives = 45/150 (30%), Gaps = 37/150 (24%)

Query: 116 IKSDHDAAKNLEALALRK-----RAEAEFEKA----------------------NFSEAD 148
           +++       L  + L        A   FE+A                        + A 
Sbjct: 1   MQTAEQNPLRL-GVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPAL 59

Query: 149 GFLSQAIELKP--------FGGIHV-LYKDRCLARLTMGNFSAALEDVREALELAPNYTE 199
                 +   P            +V LY+         G    AL  +++A  + P Y  
Sbjct: 60  ENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAP 119

Query: 200 AYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
            ++ +G V+  + + D AE S    L ++ 
Sbjct: 120 LHLQRGLVYALLGERDKAEASLKQALALED 149

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 61.4 bits (149), Expect = 4e-11
 Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
            +A    A+AE    + +  +  + + + L P  G           R T    + A   +
Sbjct: 23  FVAWLMLADAELGMGDTTAGEMAVQRGLALHP--GHPEAVARLGRVRWTQQRHAEAAVLL 80

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           ++A + AP +    +  G       Q +AA  +Y+   Q+ P
Sbjct: 81  QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 57.5 bits (139), Expect = 7e-10
 Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 2/87 (2%)

Query: 143 NFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYI 202
           +       L  A+  +P     V +     A L MG+ +A    V+  L L P + EA  
Sbjct: 4   DGPRELLQLRAAVRHRP--QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61

Query: 203 CQGDVFLAMDQYDAAEKSYSTCLQIDP 229
             G V     ++  A           P
Sbjct: 62  RLGRVRWTQQRHAEAAVLLQQASDAAP 88

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 51.4 bits (123), Expect = 8e-08
 Identities = 12/52 (23%), Positives = 19/52 (36%)

Query: 178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
            +    L  +R A+   P    A++   D  L M    A E +    L + P
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP 54

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 14/74 (18%), Positives = 22/74 (29%), Gaps = 2/74 (2%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
             A+ +     + +   +EA   L QA +  P      +      A    G   AA    
Sbjct: 57  PEAVARLGRVRWTQQRHAEAAVLLQQASDAAP--EHPGIALWLGHALEDAGQAEAAAAAY 114

Query: 188 REALELAPNYTEAY 201
             A +L P      
Sbjct: 115 TRAHQLLPEEPYIT 128

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 60.8 bits (148), Expect = 4e-11
 Identities = 16/110 (14%), Positives = 32/110 (29%), Gaps = 2/110 (1%)

Query: 120 HDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN 179
               + +         +    +   S ++       E            +  L RL  G+
Sbjct: 23  QAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKD--WPGAFEEGLKRLKEGD 80

Query: 180 FSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
               +  +  A+   P   EA+   G      +   AA  +   CL++ P
Sbjct: 81  LPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 10/111 (9%)

Query: 119 DHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMG 178
           D   A     L          ++ +      F+  AI   P  G    ++   + +    
Sbjct: 64  DWPGAFEE-GLKR-------LKEGDLPVTILFMEAAILQDP--GDAEAWQFLGITQAENE 113

Query: 179 NFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           N  AA+  ++  LEL PN  +A +     +        A ++    ++ +P
Sbjct: 114 NEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNP 164

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 3/117 (2%)

Query: 116 IKSDH-DAAKNLEAL--ALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL 172
               +    KN +      R+ +++  + +          +A           L     +
Sbjct: 162 QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221

Query: 173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
                G F+ A++    AL + P     +   G      D+ + A ++Y+  L+I P
Sbjct: 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 55.5 bits (134), Expect = 3e-09
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 2/88 (2%)

Query: 143 NFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYI 202
            F+ A    + A+ ++P    + L+               A+E    ALE+ P +  +  
Sbjct: 228 EFNRAIDAFNAALTVRP--EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRY 285

Query: 203 CQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
             G   + +  Y  A  ++ T L +   
Sbjct: 286 NLGISCINLGAYREAVSNFLTALSLQRK 313

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 16/108 (14%), Positives = 31/108 (28%), Gaps = 12/108 (11%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKP-FGGIH----VLYKDRCLARLTMGNFSA 182
           A A +     + E  N   A   L + +EL+P          V Y +         +   
Sbjct: 99  AEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN-------TSHQQD 151

Query: 183 ALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
           A E ++  ++  P Y      +        +   +    S    +   
Sbjct: 152 ACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKEL 199

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 15/112 (13%), Positives = 33/112 (29%), Gaps = 14/112 (12%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
                +            EA    ++A+E++P  G      +  ++ + +G +  A+ + 
Sbjct: 247 YSLWNRLGATLANGDRSEEAVEAYTRALEIQP--GFIRSRYNLGISCINLGAYREAVSNF 304

Query: 188 REALELAPNYTEAYICQG------------DVFLAMDQYDAAEKSYSTCLQI 227
             AL L                             MDQ +  + +    L +
Sbjct: 305 LTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDV 356

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 15/115 (13%), Positives = 35/115 (30%), Gaps = 13/115 (11%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKP-------------FGGIHVLYKDRCLAR 174
                  A +   + N + A   L   +  +P                  +  +      
Sbjct: 89  IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFF 148

Query: 175 LTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
                +      +  ALE+ PN  + +   G ++   + YD+A  +    +++ P
Sbjct: 149 AAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP 203

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 57.7 bits (140), Expect = 5e-10
 Identities = 15/106 (14%), Positives = 28/106 (26%), Gaps = 2/106 (1%)

Query: 124 KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAA 183
             +      +   +  + AN +EA        +  P       ++   L +        A
Sbjct: 17  PYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAP--EREEAWRSLGLTQAENEKDGLA 74

Query: 184 LEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           +  +  A  L P     +             +AA  S    L   P
Sbjct: 75  IIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 12/114 (10%)

Query: 121 DAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKP-FGGIH----VLYKDRCLARL 175
            A  +++ L ++           + E    L  A+E+ P    +H    VLY        
Sbjct: 131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNL------ 184

Query: 176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
              N+ +A  ++R A+EL P+  + +   G      ++   A  +Y+  L I+P
Sbjct: 185 -SNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 2/87 (2%)

Query: 143 NFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYI 202
           N+  A   L +A+EL+P      L+               AL+    AL++ P Y     
Sbjct: 187 NYDSAAANLRRAVELRP--DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMY 244

Query: 203 CQGDVFLAMDQYDAAEKSYSTCLQIDP 229
                +  M QYD A K     + +  
Sbjct: 245 NMAVSYSNMSQYDLAAKQLVRAIYMQV 271

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 2/87 (2%)

Query: 143 NFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYI 202
           +  + +               H    +  L+ L + N + A        + AP   EA+ 
Sbjct: 2   HMLQNNTDYPFEANNPYMY--HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWR 59

Query: 203 CQGDVFLAMDQYDAAEKSYSTCLQIDP 229
             G      ++   A  + +    +DP
Sbjct: 60  SLGLTQAENEKDGLAIIALNHARMLDP 86

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 13/91 (14%), Positives = 31/91 (34%), Gaps = 14/91 (15%)

Query: 143 NFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYI 202
              EA    ++A+++ P  G   +  +  ++   M  +  A + +  A+ +    T    
Sbjct: 221 RPQEALDAYNRALDINP--GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG 278

Query: 203 CQ------------GDVFLAMDQYDAAEKSY 221
                           +   M++ D  E +Y
Sbjct: 279 EASREATRSMWDFFRMLLNVMNRPDLVELTY 309

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 9/52 (17%), Positives = 15/52 (28%)

Query: 178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           G+      D          Y E  + +G   L +     A  ++    Q  P
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAP 52

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 55.9 bits (136), Expect = 1e-10
 Identities = 9/104 (8%), Positives = 36/104 (34%), Gaps = 4/104 (3%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
                     +++  N++E+     +AI+L P       +  +  A   +  +  A++  
Sbjct: 6   PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP--EESKYWLMKGKALYNLERYEEAVDCY 63

Query: 188 REALELAPNYT--EAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
              + +  +    + +  + D    ++  +   +      +++ 
Sbjct: 64  NYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 57.9 bits (140), Expect = 2e-10
 Identities = 13/104 (12%), Positives = 35/104 (33%), Gaps = 5/104 (4%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED 186
           EA+   K A   F      +    L +   ++          +         ++  A++ 
Sbjct: 56  EAIVKYKEALDFFIHTEEWDDQILLDKKKNIE-----ISCNLNLATCYNKNKDYPKAIDH 110

Query: 187 VREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
             + L++  N  +A    G   +     + A+++      ++P+
Sbjct: 111 ASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 39.0 bits (91), Expect = 5e-04
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 107 SEILMVLCGIKSDHDAAKNLEALALRK-----RAEAEFEKANFSEADGFLSQAIELKPFG 161
            E L      +   D     +   +        A    +  ++ +A    S+ +++    
Sbjct: 62  KEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN- 120

Query: 162 GIHV--LYKDRCLARLTMGNFSAALEDVREALELAPNYTEA 200
             +V  LYK   +A +  G    A E++ +A  L PN  + 
Sbjct: 121 --NVKALYK-LGVANMYFGFLEEAKENLYKAASLNPNNLDI 158

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 55.9 bits (136), Expect = 2e-10
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 12/95 (12%)

Query: 140 EKANFSEADGFLSQAIELKP-FGGIH----VLYKDRCLARLTMGNFSAALEDVREALELA 194
           ++ ++ EA  +  +A+EL P            Y          G++  A+E  ++ALEL 
Sbjct: 21  KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-------QGDYDEAIEYYQKALELD 73

Query: 195 PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           PN  EA+   G+ +     YD A + Y   L++DP
Sbjct: 74  PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 39.7 bits (94), Expect = 1e-04
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 19/91 (20%)

Query: 116 IKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKP-FGGIH----VLYKDR 170
           +  ++  A      A         ++ ++ EA  +  +A+EL P            Y   
Sbjct: 38  LDPNNAEAWYNLGNAYY-------KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK- 89

Query: 171 CLARLTMGNFSAALEDVREALELAPNYTEAY 201
                  G++  A+E  ++ALEL PN  EA 
Sbjct: 90  ------QGDYDEAIEYYQKALELDPNNAEAK 114

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 55.9 bits (136), Expect = 3e-10
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 12/95 (12%)

Query: 140 EKANFSEADGFLSQAIELKP-FGGIH----VLYKDRCLARLTMGNFSAALEDVREALELA 194
           ++ ++ EA  +  +A+EL P            Y          G++  A+E  ++ALEL 
Sbjct: 47  KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-------QGDYDEAIEYYQKALELD 99

Query: 195 PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           P   EA+   G+ +     YD A + Y   L++DP
Sbjct: 100 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 55.9 bits (136), Expect = 3e-10
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 12/95 (12%)

Query: 140 EKANFSEADGFLSQAIELKP-FGGIH----VLYKDRCLARLTMGNFSAALEDVREALELA 194
           ++ ++ EA  +  +A+EL P            Y          G++  A+E  ++ALEL 
Sbjct: 13  KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-------QGDYDEAIEYYQKALELD 65

Query: 195 PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           P   EA+   G+ +     YD A + Y   L++DP
Sbjct: 66  PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 58.9 bits (142), Expect = 3e-10
 Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 6/112 (5%)

Query: 119 DHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMG 178
           D     +    A RK+ +    +    +    + + +              +  A     
Sbjct: 62  DSYFETHSVEDAGRKQQDV---QEEMEKTLQQMEEVLGSAQ--VEAQALMLKGKALNVTP 116

Query: 179 NFS-AALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           ++S  A   + +A++L P   EA+   G+V+       +A   +S  L    
Sbjct: 117 DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK 168

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 55.0 bits (132), Expect = 5e-09
 Identities = 15/125 (12%), Positives = 41/125 (32%), Gaps = 12/125 (9%)

Query: 116 IKSDHDAAKNLEALALRK--RAEAEFEKANFSEADGFLSQAIELKP-FGGIH-----VLY 167
              +  + +NL ++ LR+      +    +  ++      A+++    G           
Sbjct: 166 HCKNKVSLQNL-SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYL 224

Query: 168 KDRCLARLTMGNFSAALEDVREALEL---APNYTEAYICQGDVFLAMDQYDAAEKSYSTC 224
                          AL    +A ++   A +  + ++ +  +    + Y  A + +S  
Sbjct: 225 SLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284

Query: 225 LQIDP 229
             +DP
Sbjct: 285 AALDP 289

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 3/106 (2%)

Query: 118 SDHDAAKNL-EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHV-LYKDRCLARL 175
            D  +   L  A         +       +A    +QA ++      +  L+ +R     
Sbjct: 211 LDGRSWYILGNAYLSLYFNTGQ-NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHK 269

Query: 176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSY 221
              ++  ALE   +A  L P + E    +  +   + +  +  +S 
Sbjct: 270 YEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 42.3 bits (99), Expect = 7e-05
 Identities = 20/121 (16%), Positives = 37/121 (30%), Gaps = 23/121 (19%)

Query: 124 KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKP-FGGIH-----VLYKDRCLARLTM 177
              +AL L+ +A          EA+  LS+A++L+P           V +K         
Sbjct: 100 VEAQALMLKGKALNVTPD-YSPEAEVLLSKAVKLEPELVEAWNQLGEVYWK--------K 150

Query: 178 GNFSAALEDVREALELAPNYTEAY--------ICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           G+ ++A      AL    N             +              + +     +Q+D 
Sbjct: 151 GDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV 210

Query: 230 S 230
            
Sbjct: 211 L 211

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 14/115 (12%)

Query: 116 IKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKP-FGGIHVLYKDRCLAR 174
           + S H    +  +  L  R     ++           +  + +      ++      L  
Sbjct: 1   MGSSH--HHHHHSSGLVPRGSHMGDQNPL--------KTDKGRDEARDAYI---QLGLGY 47

Query: 175 LTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           L  GN   A   +R+ALE+ P+  +A+     VF    +   A++ Y   L  D 
Sbjct: 48  LQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS 102

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 24/150 (16%), Positives = 41/150 (27%), Gaps = 45/150 (30%)

Query: 116 IKSDHDAAKNLEALALRK-----RAEAEFEKA----------------------NFSEAD 148
           I      A    A+  +       A+ E+ KA                       + EA 
Sbjct: 66  IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAY 125

Query: 149 GFLSQAIELKPFGGIHVLYKDR---------CLARLTMGNFSAALEDVREALELAPNYTE 199
             L +A +         LY +R            ++     + A E   ++L L  N   
Sbjct: 126 QRLLEASQDT-------LYPERSRVFENLGLVSLQM--KKPAQAKEYFEKSLRLNRNQPS 176

Query: 200 AYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
             +   D+     +Y  A + Y    Q   
Sbjct: 177 VALEMADLLYKEREYVPARQYYDLFAQGGG 206

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 7/95 (7%), Positives = 24/95 (25%), Gaps = 12/95 (12%)

Query: 140 EKANFSEADGFLSQAIELKP-FGGIH----VLYKDRCLARLTMGNFSAALEDVREALELA 194
           +    ++A  +  +++ L      +      L             +  A +      +  
Sbjct: 153 QMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK-------EREYVPARQYYDLFAQGG 205

Query: 195 PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
                + +    +    +  D A        ++ P
Sbjct: 206 GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240

>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A Length = 110

 Score = 54.1 bits (130), Expect = 6e-10
 Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 15/87 (17%)

Query: 38  AELKELRVCTNRT--------CRRQGSMQILETL------SSLAPPEVAVKSCGCLGRCG 83
           AE K + VC            C ++GS ++ +                 +   GC+    
Sbjct: 1   AEFKHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASM 60

Query: 84  AGPNLVALPDGVVVGHCGTPARASEIL 110
            GP +V  PDGV  G    P    EI+
Sbjct: 61  MGPVVVVYPDGVWYGQV-KPEDVDEIV 86

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 57.3 bits (138), Expect = 8e-10
 Identities = 26/118 (22%), Positives = 39/118 (33%), Gaps = 10/118 (8%)

Query: 116 IKSDH-DAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKP-FGGIHVLYKDRCLA 173
            K  + +    L   + R       +      A   L QAI L P    + VL     L 
Sbjct: 167 KKPKNPEFTSGLAIASYRLDNWPPSQ-----NAIDPLRQAIRLNPDNQYLKVLL-ALKLH 220

Query: 174 RL--TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           ++           + V EALE AP  T+        +   D+ D A +     L+  P
Sbjct: 221 KMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP 278

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 54.9 bits (132), Expect = 4e-09
 Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 17/119 (14%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKP-FGGIH----VLYKDRCLARLTMGN--- 179
              LR  A+    K    +A   L +A+E  P    +H      Y+ +    + +     
Sbjct: 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306

Query: 180 ---------FSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
                       A+  +++A E   N          +    DQY+ AE  +      + 
Sbjct: 307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 54.2 bits (130), Expect = 8e-09
 Identities = 17/128 (13%), Positives = 36/128 (28%), Gaps = 5/128 (3%)

Query: 108 EILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKP-FGGIHVL 166
           + +  +C   S     ++ E          +        A     +A+E KP        
Sbjct: 118 DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSG 177

Query: 167 YKDRCLARLTMGNFSAALEDVREALELAPNYTEAY----ICQGDVFLAMDQYDAAEKSYS 222
                           A++ +R+A+ L P+         +    +    ++    EK   
Sbjct: 178 LAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVE 237

Query: 223 TCLQIDPS 230
             L+  P 
Sbjct: 238 EALEKAPG 245

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 49.2 bits (117), Expect = 4e-07
 Identities = 14/126 (11%), Positives = 33/126 (26%), Gaps = 12/126 (9%)

Query: 116 IKSDHDAAKNLEAL-ALRKRAEAEFEKANFSEADGFLSQAIEL--------KPFGGIHVL 166
           I+ +H     + +L      A   +     S+   ++ +   +        +        
Sbjct: 81  IQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC 140

Query: 167 YKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMD---QYDAAEKSYST 223
            +     +        A     +ALE  P   E           +D       A      
Sbjct: 141 EEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQ 200

Query: 224 CLQIDP 229
            ++++P
Sbjct: 201 AIRLNP 206

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 20/123 (16%), Positives = 35/123 (28%), Gaps = 17/123 (13%)

Query: 124 KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFG-------GIHVLYKDRCLARLT 176
           +  +A      A  +  K     A   L +A EL              V + +       
Sbjct: 47  REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYH 106

Query: 177 MGNFSAALEDVREALELAPNY--------TEAYICQGDVFL--AMDQYDAAEKSYSTCLQ 226
           MG  S     V +   +   +         E    +G   L    +Q + A+  +   L+
Sbjct: 107 MGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE 166

Query: 227 IDP 229
             P
Sbjct: 167 KKP 169

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 16/113 (14%), Positives = 32/113 (28%), Gaps = 8/113 (7%)

Query: 123 AKNLEALALRKRAEAEFEKAN--FSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNF 180
           AK  + + LR+       K       A   L +A E      +  +             +
Sbjct: 293 AKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND--NLFRVCSILASLHALADQY 350

Query: 181 SAALEDVREALELAPNYTEA---YICQGDVFL-AMDQYDAAEKSYSTCLQIDP 229
             A    ++              ++  G+  L  M   D A   +   ++I+ 
Sbjct: 351 EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ 403

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 42.2 bits (99), Expect = 8e-05
 Identities = 12/130 (9%), Positives = 31/130 (23%), Gaps = 30/130 (23%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKP----FGGIHVLYKDRCLARLTMGNFSAA 183
                  A        + EA+ +  +    +        +H+ Y +       M     A
Sbjct: 334 FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGN--FQLYQMKCEDKA 391

Query: 184 LEDVREALELA------------------------PNYTEAYICQGDVFLAMDQYDAAEK 219
           +    E +++                            +EA      +    ++   A++
Sbjct: 392 IHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADE 451

Query: 220 SYSTCLQIDP 229
                L+   
Sbjct: 452 DSERGLESGS 461

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 56.8 bits (137), Expect = 1e-09
 Identities = 21/117 (17%), Positives = 49/117 (41%), Gaps = 13/117 (11%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-------------IHVLYKDRCLA 173
           ++  +++R    F++  + +A     + +    +                   + +  + 
Sbjct: 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205

Query: 174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
            L +  FSAA+E   +ALEL  N  +    +G+  LA++ ++ A   +   LQ+ P+
Sbjct: 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 5/104 (4%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED 186
           EA++L        +K ++  A    S   +         +  +       + N + A + 
Sbjct: 5   EAISLWNEGVLAADKKDWKGALDAFSAVQDPHS-----RICFNIGCMYTILKNMTEAEKA 59

Query: 187 VREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
              ++    +   AY  +G ++   ++YD A K     L     
Sbjct: 60  FTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 103

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 119 DHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMG 178
              A ++  +              N +EA+   +++I       + V Y  R +      
Sbjct: 28  AFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK--HLAVAYFQRGMLYYQTE 85

Query: 179 NFSAALEDVREAL-ELAPNYTEAYIC---------------QGDVFLAMDQYDAAEKSYS 222
            +  A++D++EAL +L  N    Y                    ++   +++  AE+  +
Sbjct: 86  KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145

Query: 223 TCLQIDPSIRRSKSFK 238
               +    R SK  K
Sbjct: 146 LATSMKSEPRHSKIDK 161

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 2/80 (2%)

Query: 151 LSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLA 210
           L   +         +L             F AAL  +R AL+  P Y+ A+   G     
Sbjct: 8   LEAMLAQGT--DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG 65

Query: 211 MDQYDAAEKSYSTCLQIDPS 230
                 A +++ + L    S
Sbjct: 66  QGDRAGARQAWESGLAAAQS 85

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 11/49 (22%), Positives = 16/49 (32%)

Query: 181 SAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
            A  E +   L    +        G  +   +Q+DAA       L  DP
Sbjct: 2   QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP 50

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 53.0 bits (127), Expect = 4e-09
 Identities = 11/101 (10%), Positives = 26/101 (25%), Gaps = 2/101 (1%)

Query: 130 ALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVRE 189
            L   A  +++   + +A         L  +      +      R  MG +  A+     
Sbjct: 23  QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY--DSRFFLGLGACRQAMGQYDLAIHSYSY 80

Query: 190 ALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
              +            +  L   +   AE       ++  +
Sbjct: 81  GAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 51.8 bits (124), Expect = 9e-09
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 2/87 (2%)

Query: 143 NFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYI 202
                 G ++   E+     +  LY      +   G +  A    +    L    +  ++
Sbjct: 2   PLGSGGGTIAMLNEISS-DTLEQLYS-LAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFL 59

Query: 203 CQGDVFLAMDQYDAAEKSYSTCLQIDP 229
             G    AM QYD A  SYS    +D 
Sbjct: 60  GLGACRQAMGQYDLAIHSYSYGAVMDI 86

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 38.0 bits (88), Expect = 7e-04
 Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 2/93 (2%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED 186
           ++               +  A    S    +         +   CL  L  G  + A   
Sbjct: 54  DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL--LQXGELAEAESG 111

Query: 187 VREALELAPNYTEAYICQGDVFLAMDQYDAAEK 219
           +  A EL  N  E       V   ++     ++
Sbjct: 112 LFLAQELIANXPEFXELSTRVSSMLEAIKLKKE 144

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 54.2 bits (131), Expect = 4e-09
 Identities = 11/58 (18%), Positives = 28/58 (48%)

Query: 172 LARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           +  +   ++  A   + +AL+  P    A++ + +++  +   D A++S+   L I P
Sbjct: 16  MEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP 73

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 53.0 bits (128), Expect = 9e-09
 Identities = 15/142 (10%), Positives = 41/142 (28%), Gaps = 28/142 (19%)

Query: 116 IKSDHDAAKNLEALALRK-----RAEAEFEKA-----------------------NFSEA 147
               ++ A  + A   +      +A+  F +A                         +E+
Sbjct: 37  SDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAES 96

Query: 148 DGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDV 207
             +  +A+    +   ++   ++ +     G F  A   ++ +L   P +  A+      
Sbjct: 97  MAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELART 156

Query: 208 FLAMDQYDAAEKSYSTCLQIDP 229
            +   Q   A+  +        
Sbjct: 157 KMLAGQLGDADYYFKKYQSRVE 178

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 19/147 (12%), Positives = 37/147 (25%), Gaps = 56/147 (38%)

Query: 132 RKRAEAEFEKA-------NFSEADGFLSQAIELKP-FGGIH----VLYKDRCLARLTMGN 179
            + +  + + A       ++ +A   +  A++  P           +Y+        +  
Sbjct: 5   NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQY-------LKV 57

Query: 180 FSAALEDVREALELAPNYTEAY------ICQ----------------------------- 204
              A E  R+AL + P+  E        +C                              
Sbjct: 58  NDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANL 117

Query: 205 --GDVFLAMDQYDAAEKSYSTCLQIDP 229
             G       Q+  AE      L   P
Sbjct: 118 NKGICSAKQGQFGLAEAYLKRSLAAQP 144

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 53.2 bits (128), Expect = 4e-09
 Identities = 15/66 (22%), Positives = 26/66 (39%)

Query: 165 VLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTC 224
            LY +     L +G+   A E   E L+      +A   +    +A  + D AE+     
Sbjct: 64  PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLL 123

Query: 225 LQIDPS 230
           L+  P+
Sbjct: 124 LRNHPA 129

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query: 177 MGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
             N S AL    E +E  P+Y   Y   G ++  +D+ D A  +Y+  +++  
Sbjct: 20  HDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 37.6 bits (88), Expect = 4e-04
 Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 12/79 (15%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKP-FGGIH----VLYKDRCLARLTMGNFSA 182
                  A+   +  N S A     + +E  P + G +     LY+        +     
Sbjct: 7   PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYER-------LDRTDD 59

Query: 183 ALEDVREALELAPNYTEAY 201
           A++   + +E+A       
Sbjct: 60  AIDTYAQGIEVAREEGTQK 78

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 50.9 bits (122), Expect = 1e-08
 Identities = 11/59 (18%), Positives = 21/59 (35%)

Query: 172 LARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
           L+ L + N + A        +  P   EA+   G      ++   A  + +    +DP 
Sbjct: 25  LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK 83

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 2/104 (1%)

Query: 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALE 185
           +      +   +  + AN +EA        + +P       ++   L +        A+ 
Sbjct: 15  MYHENPMEEGLSMLKLANLAEAALAFEAVCQKEP--EREEAWRSLGLTQAENEKDGLAII 72

Query: 186 DVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
            +  A  L P     +             +AA  S    L   P
Sbjct: 73  ALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 49.3 bits (119), Expect = 2e-08
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 177 MGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
            G++  A+E  ++ALEL PN  EA+   G+ +     YD A + Y   L++DP
Sbjct: 22  QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 38.5 bits (91), Expect = 2e-04
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 12/67 (17%)

Query: 140 EKANFSEADGFLSQAIELKP-FGGIH----VLYKDRCLARLTMGNFSAALEDVREALELA 194
           ++ ++ EA  +  +A+EL P            Y          G++  A+E  ++ALEL 
Sbjct: 21  KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-------QGDYDEAIEYYQKALELD 73

Query: 195 PNYTEAY 201
           PN  EA 
Sbjct: 74  PNNAEAK 80

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 2e-08
 Identities = 39/292 (13%), Positives = 83/292 (28%), Gaps = 78/292 (26%)

Query: 15  VARLRLPSNDKSF---CFPLPRARI---NAELKELRVCTNRTCRRQGSMQILETLSSLAP 68
           ++ ++      S     +   R R+   N    +  V      R Q  +++ + L  L P
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-----RLQPYLKLRQALLELRP 149

Query: 69  -PEVAV-------KSCGCLGRCGAGPNLVALPDGVV---VGHCGTPARASEILMVLC--- 114
              V +       K+   L  C +      +   +    + +C +P    E+L  L    
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 115 ----GIKSDHDAAKNLEALALRKRAEAEFEKANFSEA----DGFLSQAIELKPFGG---I 163
                 +SDH +   L   +++       +   +           +       F     I
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-WNAFNLSCKI 268

Query: 164 HVLYKDRCLA---------RLTMGNFSAALEDVREALELAPNYT---------EAYICQG 205
            +  + + +           +++ + S  L    E   L   Y          E      
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLPREV--LTT 325

Query: 206 DVF-LAM------------DQY-----DAAEKSYSTCL-QIDPSIRRSKSFK 238
           +   L++            D +     D       + L  ++P+  R K F 
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR-KMFD 376

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 48.9 bits (117), Expect = 4e-08
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 178 GNFSAALEDVREALELAP-NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           G+   AL+ + E L+  P    EAY   G+ +  +  +  A  +Y + ++++P
Sbjct: 14  GDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 133 KRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALE 192
           K  +    + +   A   L + ++ +P  G    Y     A   +G++  AL + + A+E
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63

Query: 193 LAPNYTEAY 201
           L P+     
Sbjct: 64  LNPDSPALQ 72

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 51.7 bits (123), Expect = 5e-08
 Identities = 15/108 (13%), Positives = 29/108 (26%), Gaps = 2/108 (1%)

Query: 123 AKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSA 182
             +LE +A+    +   +      A   L +  +      +  L                
Sbjct: 127 GDSLECMAMT--VQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQD 184

Query: 183 ALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
           A    +E  +           Q    +A  +++AAE      L  D  
Sbjct: 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 49.0 bits (116), Expect = 4e-07
 Identities = 17/126 (13%), Positives = 37/126 (29%), Gaps = 8/126 (6%)

Query: 106 ASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHV 165
           A + L  +     D    +   A         + +     +A     +  +        +
Sbjct: 149 ARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQ-----DAYYIFQEMADKCS--PTLL 201

Query: 166 LYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCL 225
           L   +    +  G + AA   ++EAL+    + E  I    +   + +       Y + L
Sbjct: 202 LLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261

Query: 226 -QIDPS 230
                S
Sbjct: 262 KDAHRS 267

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 27/187 (14%), Positives = 53/187 (28%), Gaps = 17/187 (9%)

Query: 56  SMQILETLSSLAPPEVAVKSCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILM---- 111
           SM+  E        E+A    G        P    L +  V+G   T    +   M    
Sbjct: 115 SMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEE 174

Query: 112 VLCGIKSDHDAAKNLEALALRKRAEAEFEKA--------NFSEADGFLSQAIELKPFGGI 163
            +           +L      + A  ++E A         F     +   A+ +K     
Sbjct: 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVK----- 229

Query: 164 HVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYST 223
           +  + +     + +  +  A+      L       +A   +G     + Q D+A   +  
Sbjct: 230 NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRK 289

Query: 224 CLQIDPS 230
             +  P 
Sbjct: 290 AQKYAPD 296

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 46.6 bits (110), Expect = 3e-06
 Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 2/90 (2%)

Query: 141 KANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEA 200
           + +  E   +++  IE +P    + ++  R +    + + S  LE + + L        A
Sbjct: 145 QKDLHEEMNYITAIIEEQP--KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA 202

Query: 201 YICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
           +  +  V      +D   +     L+ D  
Sbjct: 203 WQHRQWVIQEFKLWDNELQYVDQLLKEDVR 232

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 21/147 (14%), Positives = 47/147 (31%), Gaps = 16/147 (10%)

Query: 94  GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQ 153
            V+V     P++  E +  +  +  D   AKN  A   R+    EF+   +     ++ Q
Sbjct: 173 RVLVEWLRDPSQELEFIADI--LNQD---AKNYHAWQHRQWVIQEFKL--WDNELQYVDQ 225

Query: 154 AIELKP--FGGIHVLYKDRCLARLT----MGNFSAALEDVREALELAPNYTEAYICQGDV 207
            ++         +   +   ++  T           ++   E ++L P+   A+     +
Sbjct: 226 LLKEDVRNNSVWN--QRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGI 283

Query: 208 FLAMDQYDAAEKSYSTCLQIDPSIRRS 234
                         +  L + PS    
Sbjct: 284 LQDRG-LSKYPNLLNQLLDLQPSHSSP 309

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 44.9 bits (106), Expect = 5e-06
 Identities = 12/62 (19%), Positives = 27/62 (43%)

Query: 168 KDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQI 227
           +D      +  N  A L+ +++ +   P  +E +   G+ +L  + Y  +  +Y   LQ+
Sbjct: 14  RDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL 73

Query: 228 DP 229
             
Sbjct: 74  RG 75

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 5/108 (4%)

Query: 124 KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKP-FGGIHVLYKDRCLARLTMGNFSA 182
           +N E  AL    E    + ++S +     QA++L+     ++       L      + +A
Sbjct: 42  QNSEQWALL--GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALAT-VLYYQASQHMTA 98

Query: 183 -ALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
                + +AL L  N   A +           Y  A + +   + ++ 
Sbjct: 99  QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 20/139 (14%), Positives = 44/139 (31%), Gaps = 24/139 (17%)

Query: 115 GIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKP----------FGGIH 164
           G+K   +      AL+    A+ +     + EA     +A+E+             G   
Sbjct: 1   GMKPLKEVVGAYLALS---DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDA 57

Query: 165 VLYKDRCLARLTMGNFSAALEDVREAL-------ELAPNYTEAYIC----QGDVFLAMDQ 213
             +     A   + +F  AL    +AL       EL  +  + +I     +      + +
Sbjct: 58  FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGR 117

Query: 214 YDAAEKSYSTCLQIDPSIR 232
              A   +   +++    +
Sbjct: 118 GAEAMPEFKKVVEMIEERK 136

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 177 MGNFSAALEDVREALEL---APNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRR 233
           +G  + A+    +A+       +  E Y+  G  F  + +Y  AE   +  ++  P+ + 
Sbjct: 3   LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62

Query: 234 SKSFK 238
            + F 
Sbjct: 63  LRVFY 67

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 40.1 bits (94), Expect = 8e-05
 Identities = 12/86 (13%), Positives = 27/86 (31%), Gaps = 1/86 (1%)

Query: 146 EADGFLSQAIELKPFGGIHVL-YKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQ 204
           +A  +  +AI     G      Y        T+G +  A   +   ++  PN+    +  
Sbjct: 8   QAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFY 67

Query: 205 GDVFLAMDQYDAAEKSYSTCLQIDPS 230
             V   + +Y+   +     +     
Sbjct: 68  AMVLYNLGRYEQGVELLLKIIAETSD 93

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 42.2 bits (99), Expect = 7e-05
 Identities = 27/152 (17%), Positives = 47/152 (30%), Gaps = 26/152 (17%)

Query: 94  GVVVGHCGTPARASEILMVLCGIKSDHD----AAKNLEALAL------RKRAEAEFEKA- 142
           G+++        A + +     +  ++     AA  L+            +A   +++A 
Sbjct: 83  GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAA 142

Query: 143 NFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELA------PN 196
              E +  L QA EL   G    L             F  A   +++   +       P 
Sbjct: 143 AVFENEERLRQAAEL--IGKASRLLVR-------QQKFDEAAASLQKEKSMYKEMENYPT 193

Query: 197 YTEAYICQGDVFLAMDQYDAAEKSYSTCLQID 228
             +  I Q  V L    Y AA+K       I 
Sbjct: 194 CYKKCIAQVLVQLHRADYVAAQKCVRESYSIP 225

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 41.9 bits (98), Expect = 7e-05
 Identities = 22/157 (14%), Positives = 42/157 (26%), Gaps = 25/157 (15%)

Query: 101 GTPARASEILMVLCGIKSDHD----AAKNLEALALRKRAEAEFEKANFSEADGFLSQAIE 156
           G    A + L     I +        A     L        E +  ++++A      A E
Sbjct: 91  GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG----EILENDLHDYAKAIDCYELAGE 146

Query: 157 LKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALEL--------------APNYTEAYI 202
                    L        +   +  A      EA ++                +  + ++
Sbjct: 147 WYAQDQSVALSNK---CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203

Query: 203 CQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV 239
            +G   LA     AA ++       DP+   S+    
Sbjct: 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNF 240

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 10/115 (8%), Positives = 33/115 (28%), Gaps = 8/115 (6%)

Query: 125 NLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFG----GIHVLYKDRCLARLTMGNF 180
           ++ +L+      +     +            +          + +            G+ 
Sbjct: 5   SMSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDC 64

Query: 181 SAALEDVREALELA----PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI 231
            A +   + A++         +  Y   G+ +  +  Y+ A + +   L +  S+
Sbjct: 65  RAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM 119

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 15/65 (23%), Positives = 29/65 (44%)

Query: 166 LYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCL 225
              +    +L M ++  A++   EALE+ P+ T+A   +   +  + +YD A        
Sbjct: 275 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ 334

Query: 226 QIDPS 230
           +I P 
Sbjct: 335 EIAPE 339

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 18/106 (16%), Positives = 45/106 (42%), Gaps = 15/106 (14%)

Query: 133 KRAEAEFEKA--------NFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAAL 184
            +A  ++ K           SE +   S++  L         + +  +  L +  ++ A+
Sbjct: 285 MQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA-------AFLNLAMCYLKLREYTKAV 337

Query: 185 EDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
           E   +AL L     +    +G+  L M+++++A+  +   L+++P 
Sbjct: 338 ECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 8/109 (7%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIEL--KPFGGIHVLYKDRCLARLTMGNFSAAL 184
             L L    E   +  +      F   A+++  +    +  +Y     A   + +++ AL
Sbjct: 8   SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKAL 67

Query: 185 EDVREALELA------PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQI 227
           E     L LA          +A    G+    +  +D A       L I
Sbjct: 68  EYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 116

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 17/136 (12%), Positives = 37/136 (27%), Gaps = 22/136 (16%)

Query: 119 DHDAAKNL--EALALRKR-------------AEAEFEKANFSEADGFLSQAIELKPFGGI 163
           D   A     +A  + +              +    +     +A  F+ + ++       
Sbjct: 237 DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS- 295

Query: 164 HVLYKDRCLARLTMGNFSAALEDVREALE------LAPNYTEAYICQGDVFLAMDQYDAA 217
           H  YK+  L    +   +     + + L       L             VF +   ++ A
Sbjct: 296 HKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQA 355

Query: 218 EKSYSTCLQIDPSIRR 233
              Y   L+    I +
Sbjct: 356 AAFYRKVLKAQEDILK 371

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 17/120 (14%)

Query: 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHV-----LYKDRCLARL--TMG 178
           L+  +L  R   EF++  + EA G+  +A +  PF    +      +K   +A     M 
Sbjct: 99  LKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFK---VAEAYYHMK 155

Query: 179 NFSAALEDVREALELA-------PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI 231
               ++  + +AL++            ++       +     YD A       L++   I
Sbjct: 156 QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI 215

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 8/109 (7%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIEL--KPFGGIHVLYKDRCLARLTMGNFSAAL 184
             L L    E   +  +      F   A+++  +    +  +Y     A   + +++ AL
Sbjct: 4   SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKAL 63

Query: 185 EDVREALELA------PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQI 227
           E     L LA          +A    G+    +  +D A       L I
Sbjct: 64  EYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 112

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 17/120 (14%), Positives = 36/120 (30%), Gaps = 31/120 (25%)

Query: 117 KSDHDAAKNL--EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLAR 174
           + ++ +A     +A +     +   EKA F               F  +   Y       
Sbjct: 116 QREYLSAIKFFKKAESKLIFVKDRIEKAEF---------------FFKMSESYYY----- 155

Query: 175 LTMGNFSAALEDVREALELA-------PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQI 227
             M     +++  R+A E+            + +      FL + QY+ A   +     +
Sbjct: 156 --MKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM 213

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	243
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.9
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.9
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.86
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.84
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.84
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.82
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.82
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.82
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.82
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.81
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.81
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.81
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.8
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.79
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.79
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.79
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.79
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.77
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.77
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.77
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.76
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.76
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.76
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.75
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.75
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.75
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.74
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.74
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.74
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.73
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.73
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.73
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.73
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.73
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.72
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.72
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.72
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.72
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.72
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.71
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.71
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.71
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.71
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.71
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.71
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.71
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.71
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.7
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.7
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.7
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.7
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.7
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.69
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.69
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.69
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.69
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.69
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.68
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.68
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.68
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.68
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.67
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.67
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.67
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.67
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.66
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.66
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.66
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.66
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.66
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.66
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.66
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.65
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.65
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.65
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.64
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.64
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.64
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.64
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.63
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.63
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.63
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.63
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.63
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.63
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.62
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.62
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.62
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.62
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.62
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.62
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.6
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.59
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.59
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.59
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.59
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.57
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.57
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.57
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.57
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.57
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.56
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.56
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.56
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.55
3i9v_2	181	NADH-quinone oxidoreductase subunit 2; electron tr	99.55
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.55
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.55
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.55
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.54
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.54
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.54
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.54
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.54
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.53
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.53
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.53
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.52
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.51
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.51
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.5
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.5
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.49
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.49
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.49
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.49
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.48
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.48
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.48
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.48
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.48
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.48
1m2d_A	110	[2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2	99.48
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.48
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.47
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.47
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.47
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.46
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.46
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.46
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.46
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.46
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.45
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.45
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.45
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.45
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.44
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.44
2auv_A	85	Potential NAD-reducing hydrogenase subunit; thiore	99.44
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.44
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.44
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.44
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.43
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.43
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.43
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.42
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.42
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.42
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.41
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.41
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.4
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.4
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.39
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.38
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.38
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.37
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.36
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.36
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.36
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.35
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.34
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.33
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.33
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.32
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.32
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.31
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.31
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.3
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.3
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.29
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.27
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.26
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.25
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.24
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.24
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.23
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.23
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.21
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.2
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.2
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.2
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.16
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.13
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.12
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.11
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.08
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.08
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.07
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.02
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.99
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.96
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.95
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.95
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.95
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.92
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.9
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.82
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.81
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.79
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.77
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.76
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.74
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.69
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.61
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.59
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.56
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.48
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.42
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.32
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.32
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.28
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.27
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.26
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.22
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.18
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.12
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.02
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.0
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.91
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.73
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.47
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.38
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.34
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.21
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.08
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.99
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.91
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.8
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.6
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.48
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.27
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.03
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.84
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.69
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.64
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	95.37
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.99
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.58
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.38
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	93.97
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	93.83
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	93.7
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	92.64
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.27
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	91.79
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	91.56
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	91.25
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	90.14
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	89.98
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	89.21
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	89.0
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	88.65
2vkj_A	106	TM1634; membrane protein, TPR motif joint center f	85.89
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	84.61
1o8r_A	94	Guanylin; prohormone, GAP-I, precursor, prosequenc	83.45
3rof_A	158	Low molecular weight protein-tyrosine-phosphatase;	83.29
1om2_A	95	Protein (mitochondrial import receptor subunit TOM	81.2
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	80.83

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.90  E-value=1.2e-22  Score=142.59  Aligned_cols=114  Identities=22%  Similarity=0.419  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG  205 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  205 (243)
                      ..+..+.++|+.+++.|+|++|+..|+++++++|.++  .+|.++|.++..+|++++|+..++++++++|+++.+|+++|
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg   88 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA--ILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKA   88 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            8889999999999999999999999999999999987  99999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          206 DVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      .++..+|++++|+..|+++++++|+++.++..++++
T Consensus        89 ~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           89 ACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            999999999999999999999999999999888765

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.90  E-value=1.6e-23  Score=151.56  Aligned_cols=140  Identities=14%  Similarity=0.044  Sum_probs=127.8

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      .|..+...|+.++|++.++.++...|       ..+..++.+|.+|+..|+|++|+..|+++++++|+++  .+|+++|.
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p-------~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~--~a~~~lg~   73 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPR-------QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP--KAHRFLGL   73 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHH-------HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCc-------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHH
Confidence            35666777899999999999998877       8888999999999999999999999999999999987  99999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHhccCCCchhhhhhhhhc
Q 026145          173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKS-YSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ++..+|++++|+..|+++++++|+++.+++++|.+|...|++++|... ++++++++|+++.++..++++
T Consensus        74 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~l  143 (150)
T 4ga2_A           74 LYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQL  143 (150)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999887665 699999999999999888765

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.86  E-value=6.1e-21  Score=138.00  Aligned_cols=106  Identities=13%  Similarity=0.034  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG  205 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  205 (243)
                      .++.+++.+|..++..|++++|+..|++++.++|+++  .+|+++|.++..+|+|++|+..|+++++++|+++.+++++|
T Consensus        34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~--~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg  111 (151)
T 3gyz_A           34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV--DYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTG  111 (151)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence            8899999999999999999999999999999999988  99999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCchh
Q 026145          206 DVFLAMDQYDAAEKSYSTCLQIDPSIRR  233 (243)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~p~~~~  233 (243)
                      .+|..+|++++|+..|++++++.|+.+.
T Consensus       112 ~~~~~lg~~~eA~~~~~~al~l~~~~~~  139 (151)
T 3gyz_A          112 QCQLRLKAPLKAKECFELVIQHSNDEKL  139 (151)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCHHH
Confidence            9999999999999999999999998873

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.84  E-value=1.7e-20  Score=135.32  Aligned_cols=123  Identities=11%  Similarity=0.119  Sum_probs=114.5

Q ss_pred             HHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHH
Q 026145          108 EILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV  187 (243)
Q Consensus       108 ~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~  187 (243)
                      ..+++++...|       .....++.+|..+...|++++|+..|++++..+|.++  .+|+++|.++..+|++++|+..|
T Consensus         8 ~~~~~al~~~p-------~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~   78 (148)
T 2vgx_A            8 GTIAMLNEISS-------DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS--RFFLGLGACRQAMGQYDLAIHSY   78 (148)
T ss_dssp             CSHHHHTTCCH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhHHHHHcCCH-------hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH--HHHHHHHHHHHHHhhHHHHHHHH
Confidence            35677788887       8899999999999999999999999999999999987  99999999999999999999999


Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145          188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       188 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  239 (243)
                      ++++.++|+++.+++++|.+|..+|++++|+..|+++++++|+++.......
T Consensus        79 ~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  130 (148)
T 2vgx_A           79 SYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST  130 (148)
T ss_dssp             HHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred             HHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHH
Confidence            9999999999999999999999999999999999999999999887654443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.84  E-value=1.1e-20  Score=167.82  Aligned_cols=139  Identities=17%  Similarity=0.136  Sum_probs=132.7

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |..|...|++++|++.|++++...|       ..+.+++++|.++...|++++|+..|+++++++|++.  .+|+++|.+
T Consensus        16 G~~~~~~G~~~eAi~~~~kAl~l~P-------~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~--~a~~nLg~~   86 (723)
T 4gyw_A           16 ANIKREQGNIEEAVRLYRKALEVFP-------EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA--DAYSNMGNT   86 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCS-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHH
Confidence            5567788999999999999999998       7889999999999999999999999999999999987  999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      +..+|++++|++.|+++++++|+++.+++++|.+|..+|++++|++.|+++++++|+++.++..++.+
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~  154 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC  154 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999887754

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.82  E-value=9.1e-20  Score=130.37  Aligned_cols=123  Identities=12%  Similarity=0.186  Sum_probs=112.0

Q ss_pred             HHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHH
Q 026145          109 ILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVR  188 (243)
Q Consensus       109 ~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~  188 (243)
                      .+++++...|       .....++.+|..++..|++++|+..|++++..+|+++  .+|+.+|.++..+|++++|+..|+
T Consensus         6 ~l~~al~~~p-------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~   76 (142)
T 2xcb_A            6 TLAMLRGLSE-------DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA--RYFLGLGACRQSLGLYEQALQSYS   76 (142)
T ss_dssp             ---CCTTCCH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHcCCH-------HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHHhhHHHHHHHHH
Confidence            4555666666       7888999999999999999999999999999999987  999999999999999999999999


Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          189 EALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       189 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      +++.++|+++.+++.+|.++..+|++++|+..|++++.++|+++.......+
T Consensus        77 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  128 (142)
T 2xcb_A           77 YGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAAR  128 (142)
T ss_dssp             HHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred             HHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence            9999999999999999999999999999999999999999998877665544

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.82  E-value=3e-19  Score=124.79  Aligned_cols=114  Identities=23%  Similarity=0.342  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG  205 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  205 (243)
                      ..+..++.+|..++..|+|++|+..|++++..+|+++  .+|.++|.++..+|++++|+..++++++++|+++.+++.+|
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg   79 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA--RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA   79 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            5678899999999999999999999999999999987  99999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHhccC------CCchhhhhhhhhc
Q 026145          206 DVFLAMDQYDAAEKSYSTCLQID------PSIRRSKSFKVSS  241 (243)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~a~i  241 (243)
                      .++..+|++++|+..|+++++++      |+++.++..+.++
T Consensus        80 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~  121 (126)
T 3upv_A           80 TAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  121 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             HHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence            99999999999999999999999      9998888776654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.82  E-value=2.2e-19  Score=137.56  Aligned_cols=138  Identities=20%  Similarity=0.123  Sum_probs=130.5

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHhhccCCCCc
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEK-----------ANFSEADGFLSQAIELKPFGG  162 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~-----------~~~~~A~~~~~~al~~~p~~~  162 (243)
                      |..+...|++++|+..+++++...|       ..+.+++.+|.++...           |++++|+..|+++++++|++.
T Consensus        46 g~~~~~~g~~~~A~~~~~~al~~~P-------~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~  118 (217)
T 2pl2_A           46 ARTQLKLGLVNPALENGKTLVARTP-------RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA  118 (217)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccH
Confidence            4556778899999999999999998       7888999999999999           999999999999999999987


Q ss_pred             hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          163 IHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       163 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                        .++.++|.++..+|++++|+..|+++++++ +++.+++++|.++..+|++++|+..|+++++++|+++.++..++.+
T Consensus       119 --~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~  194 (217)
T 2pl2_A          119 --PLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASA  194 (217)
T ss_dssp             --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence              999999999999999999999999999999 9999999999999999999999999999999999999998877665

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.82  E-value=2.8e-19  Score=137.00  Aligned_cols=138  Identities=18%  Similarity=0.123  Sum_probs=130.1

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |..+...|++++|+..+++++...|       ..+.+++.+|.++...|++++|+..|+++++++|++.  .++.++|.+
T Consensus        12 g~~~~~~g~~~~A~~~~~~al~~~p-------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~lg~~   82 (217)
T 2pl2_A           12 GVQLYALGRYDAALTLFERALKENP-------QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL--GGYMVLSEA   82 (217)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTSS-------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHH
Confidence            3445667899999999999999998       8899999999999999999999999999999999987  999999999


Q ss_pred             HHHc-----------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          174 RLTM-----------GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       174 ~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      +..+           |++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++ +++.++..++.+
T Consensus        83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~  160 (217)
T 2pl2_A           83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL  160 (217)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred             HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence            9999           999999999999999999999999999999999999999999999999999 999888877654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.81  E-value=1.7e-19  Score=129.79  Aligned_cols=114  Identities=12%  Similarity=0.095  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCC-------Cc---hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHh--
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPF-------GG---IHVLYKDRCLARLTMGNFSAALEDVREALEL--  193 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--  193 (243)
                      ..+..+..+|+.+++.|+|++|+..|+++|+++|+       +.   ...+|.++|.++..+|+|++|+..++++|++  
T Consensus         9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            45778899999999999999999999999999998       32   1139999999999999999999999999999  


Q ss_pred             -----CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145          194 -----APNYTEAY----ICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       194 -----~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  239 (243)
                           +|+++.+|    +++|.++..+|++++|+..|+++++++|++.....-+.
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~  143 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKE  143 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence                 99999999    99999999999999999999999999999876654433

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.81  E-value=1.4e-19  Score=134.59  Aligned_cols=131  Identities=17%  Similarity=0.139  Sum_probs=85.7

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-----------
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-----------  162 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----------  162 (243)
                      |..|...|++++|++.|++++..+|       ..+.+++.+|.++...|++++|+..+.+++...|++.           
T Consensus        12 G~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
T 3vtx_A           12 GDKKRTKGDFDGAIRAYKKVLKADP-------NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF   84 (184)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            5566677899999999999998887       6677888888888888888888888877777766654           


Q ss_pred             ---------------------hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 026145          163 ---------------------IHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSY  221 (243)
Q Consensus       163 ---------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  221 (243)
                                           ...++..+|.++..+|++++|+..|+++++++|.++.+++++|.+|..+|++++|+..|
T Consensus        85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~  164 (184)
T 3vtx_A           85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF  164 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence                                 01344455555555555555555555555555555555555555555555555555555


Q ss_pred             HHHhccCCCc
Q 026145          222 STCLQIDPSI  231 (243)
Q Consensus       222 ~~al~~~p~~  231 (243)
                      +++++++|++
T Consensus       165 ~~al~~~p~~  174 (184)
T 3vtx_A          165 KKALEKEEKK  174 (184)
T ss_dssp             HHHHHTTHHH
T ss_pred             HHHHhCCccC
Confidence            5555555544

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.81  E-value=1.1e-19  Score=150.54  Aligned_cols=138  Identities=13%  Similarity=0.052  Sum_probs=130.6

Q ss_pred             eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKAN-FSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      ..+...|++++|++.+++++..+|       ....+|+.+|.++...|+ +++|+..|++++.++|++.  .+|+++|.+
T Consensus       105 ~~~~~~g~~~~Al~~~~~al~l~P-------~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~--~a~~~~g~~  175 (382)
T 2h6f_A          105 AVLQRDERSERAFKLTRDAIELNA-------ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY--QVWHHRRVL  175 (382)
T ss_dssp             HHHHHTCCCHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred             HHHHHCCChHHHHHHHHHHHHhCc-------cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH--HHHHHHHHH
Confidence            344566789999999999999998       889999999999999997 9999999999999999987  999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      +..+|++++|+..|+++++++|++..+|+++|.++..+|++++|+..|+++++++|++..+|..++.+
T Consensus       176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~  243 (382)
T 2h6f_A          176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFV  243 (382)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999888765

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.80  E-value=7.2e-19  Score=123.40  Aligned_cols=105  Identities=18%  Similarity=0.266  Sum_probs=98.0

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------
Q 026145          125 NLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNY-------  197 (243)
Q Consensus       125 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------  197 (243)
                      ...+.++.++|+.+++.|+|++|+..|+++++++|+++  .+|.++|.+|..+|+|++|+..++++++++|++       
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~--~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~   82 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI--TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI   82 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH
Confidence            36778899999999999999999999999999999987  999999999999999999999999999998865       


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145          198 TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI  231 (243)
Q Consensus       198 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  231 (243)
                      ..++.++|.++..+|++++|++.|++++..+|+.
T Consensus        83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~  116 (127)
T 4gcn_A           83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP  116 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence            3589999999999999999999999999998864

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.79  E-value=1.1e-18  Score=127.30  Aligned_cols=114  Identities=19%  Similarity=0.172  Sum_probs=105.3

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc------------------CCCCchHHHHHhHHHHHHHcCCHHHHHHH
Q 026145          125 NLEALALRKRAEAEFEKANFSEADGFLSQAIEL------------------KPFGGIHVLYKDRCLARLTMGNFSAALED  186 (243)
Q Consensus       125 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~~~la~~~~~~~~~~~A~~~  186 (243)
                      ...+..+..+|..+++.|+|++|+..|.+++..                  +|.+.  .+|.++|.++..+|+|++|+..
T Consensus         8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~nla~~~~~~~~~~~A~~~   85 (162)
T 3rkv_A            8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNI--PLYANMSQCYLNIGDLHEAEET   85 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHH--HHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH--HHHHHHHHHHHhcCcHHHHHHH
Confidence            367889999999999999999999999999999                  66644  8999999999999999999999


Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch-hhhhhhhh
Q 026145          187 VREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIR-RSKSFKVS  240 (243)
Q Consensus       187 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~a~  240 (243)
                      ++++++++|+++.+++.+|.+|..+|++++|+..|++++.++|+++ .+...++.
T Consensus        86 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~  140 (162)
T 3rkv_A           86 SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKI  140 (162)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998 55555544

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.79  E-value=2e-18  Score=131.36  Aligned_cols=129  Identities=16%  Similarity=0.124  Sum_probs=117.3

Q ss_pred             eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHH----------------HHHHHHHhcCHHHHHHHHHHhhccC
Q 026145           95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRK----------------RAEAEFEKANFSEADGFLSQAIELK  158 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~----------------~a~~~~~~~~~~~A~~~~~~al~~~  158 (243)
                      ..+...|++++|+..|++++...|       .++.+++.                +|.++...|++++|+..|+++++++
T Consensus        12 ~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   84 (208)
T 3urz_A           12 SAAIEAGQNGQAVSYFRQTIALNI-------DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA   84 (208)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCH-------HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCC-------CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            344567899999999999999888       88888988                9999999999999999999999999


Q ss_pred             CCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---------------------------
Q 026145          159 PFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAM---------------------------  211 (243)
Q Consensus       159 p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------------------------  211 (243)
                      |++.  .++.++|.++..+|++++|+..|+++++++|+++.+++++|.+|...                           
T Consensus        85 p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  162 (208)
T 3urz_A           85 PNNV--DCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYR  162 (208)
T ss_dssp             TTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHH
T ss_pred             CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHH
Confidence            9987  99999999999999999999999999999999999988888776433                           


Q ss_pred             --------CCHHHHHHHHHHHhccCCCch
Q 026145          212 --------DQYDAAEKSYSTCLQIDPSIR  232 (243)
Q Consensus       212 --------g~~~~A~~~~~~al~~~p~~~  232 (243)
                              |++++|+..|+++++++|+..
T Consensus       163 ~g~~~~~~~~~~~A~~~~~~al~l~P~~~  191 (208)
T 3urz_A          163 DGLSKLFTTRYEKARNSLQKVILRFPSTE  191 (208)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence                    468899999999999999754

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.79  E-value=2.3e-18  Score=125.85  Aligned_cols=111  Identities=21%  Similarity=0.321  Sum_probs=106.0

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 026145          124 KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYIC  203 (243)
Q Consensus       124 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  203 (243)
                      ....+..++.+|..++..|+|++|+..|++++.++|++.  .+|+++|.++..+|++++|+..++++++++|+++.++++
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   84 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP--IYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSR   84 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            347888999999999999999999999999999999987  999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhccCCCchhhhh
Q 026145          204 QGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKS  236 (243)
Q Consensus       204 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  236 (243)
                      +|.+|..+|++++|+..|+++++++|+++.++.
T Consensus        85 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  117 (164)
T 3sz7_A           85 LGLARFDMADYKGAKEAYEKGIEAEGNGGSDAM  117 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence            999999999999999999999999999988553

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.79  E-value=4.7e-19  Score=131.68  Aligned_cols=90  Identities=19%  Similarity=0.048  Sum_probs=78.6

Q ss_pred             cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCC
Q 026145          100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN  179 (243)
Q Consensus       100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~  179 (243)
                      .++++.+.+.+.+++...|       ....++..+|.++...|++++|+..|+++++.+|+++  .++.++|.++..+|+
T Consensus        86 ~~~~~~a~~~~~~a~~~~~-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~lg~~~~~~g~  156 (184)
T 3vtx_A           86 IDEKQAAIDALQRAIALNT-------VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFI--RAYQSIGLAYEGKGL  156 (184)
T ss_dssp             TTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHHHHHhCc-------cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhh--hHHHHHHHHHHHCCC
Confidence            3456666666666665555       5677889999999999999999999999999999987  999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCcH
Q 026145          180 FSAALEDVREALELAPNYT  198 (243)
Q Consensus       180 ~~~A~~~~~~al~~~p~~~  198 (243)
                      +++|+..|+++++++|+++
T Consensus       157 ~~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          157 RDEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHhCCccCH
Confidence            9999999999999999764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.77  E-value=1.2e-18  Score=134.03  Aligned_cols=141  Identities=14%  Similarity=0.118  Sum_probs=126.8

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      .|..+...|++++|++.|++++...|.      .....++.+|.++...|++++|+..|++++..+|++.  .++..+|.
T Consensus        13 ~g~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l~~   84 (228)
T 4i17_A           13 EGNDALNAKNYAVAFEKYSEYLKLTNN------QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA--NAYIGKSA   84 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHTTT------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH--HHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHhccCC------CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH--HHHHHHHH
Confidence            355567788999999999999976631      2235777899999999999999999999999999976  99999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--chhhhhhhhhc
Q 026145          173 ARLTMGNFSAALEDVREALELAPNYT-------EAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS--IRRSKSFKVSS  241 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~a~i  241 (243)
                      ++..+|++++|+..++++++++|+++       .+++.+|.++...|++++|+..|+++++++|+  ++.++..++.+
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  162 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL  162 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence            99999999999999999999999998       67999999999999999999999999999999  88888877655

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.77  E-value=1.3e-18  Score=133.78  Aligned_cols=142  Identities=17%  Similarity=0.132  Sum_probs=131.4

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-----hHHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-----IHVLY  167 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~  167 (243)
                      .|..+...|++++|++.+++++...|       ....+++.+|.++...|++++|+..|+++++.+|+++     ...+|
T Consensus        48 ~~~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  120 (228)
T 4i17_A           48 CGVCADNIKKYKEAADYFDIAIKKNY-------NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYY  120 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTC-------SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhhcHHHHHHHHHHHHHhCc-------chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            45666788899999999999999998       7899999999999999999999999999999999975     12569


Q ss_pred             HhHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCH---------------------------HHHH
Q 026145          168 KDRCLARLTMGNFSAALEDVREALELAPN--YTEAYICQGDVFLAMDQY---------------------------DAAE  218 (243)
Q Consensus       168 ~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~---------------------------~~A~  218 (243)
                      .++|.++..+|++++|+..|+++++++|+  ++.+++++|.+|...|+.                           ++|+
T Consensus       121 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~  200 (228)
T 4i17_A          121 LKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAV  200 (228)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999  999999999999999998                           9999


Q ss_pred             HHHHHHhccCCCchhhhhhhhhc
Q 026145          219 KSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       219 ~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ..++++++++|+++.+...++++
T Consensus       201 ~~~~~a~~l~p~~~~~~~~l~~i  223 (228)
T 4i17_A          201 DYLGEAVTLSPNRTEIKQMQDQV  223 (228)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHhhcCCCCHHHHHHHHHH
Confidence            99999999999999998887765

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.77  E-value=5.5e-18  Score=117.86  Aligned_cols=103  Identities=15%  Similarity=0.057  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 026145          129 LALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVF  208 (243)
Q Consensus       129 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  208 (243)
                      ..++.+|..+...|++++|+..|++++..+|++.  .+|+.+|.++..+|++++|+..|+++++++|+++.+++.+|.++
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~   95 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPERE--EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH   95 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3578899999999999999999999999999987  99999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHhccCCCchh
Q 026145          209 LAMDQYDAAEKSYSTCLQIDPSIRR  233 (243)
Q Consensus       209 ~~~g~~~~A~~~~~~al~~~p~~~~  233 (243)
                      ...|++++|+..++++++++|+++.
T Consensus        96 ~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           96 TNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHC-------
T ss_pred             HHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            9999999999999999999998764

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.76  E-value=3e-18  Score=126.65  Aligned_cols=136  Identities=13%  Similarity=0.077  Sum_probs=121.2

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH-H
Q 026145           96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA-R  174 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~-~  174 (243)
                      .+...|++++|++.+++++...|       ..+..++.+|.++...|++++|+..|++++..+|+++  .++..+|.+ +
T Consensus        19 ~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~l~   89 (177)
T 2e2e_A           19 QFASQQNPEAQLQALQDKIRANP-------QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA--ELYAALATVLY   89 (177)
T ss_dssp             CCC-----CCCCHHHHHHHHHCC-------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH--HHHHHHHHHHH
T ss_pred             hhhhccCHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHH
Confidence            34566799999999999998887       6788999999999999999999999999999999987  999999999 8


Q ss_pred             HHcCCH--HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          175 LTMGNF--SAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       175 ~~~~~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      ...|++  ++|+..++++++.+|+++.+++.+|.++...|++++|+..+++++.++|+++........
T Consensus        90 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  157 (177)
T 2e2e_A           90 YQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVES  157 (177)
T ss_dssp             HHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHH
T ss_pred             HhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence            899999  999999999999999999999999999999999999999999999999998776655443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.76  E-value=6.7e-19  Score=145.92  Aligned_cols=139  Identities=9%  Similarity=-0.011  Sum_probs=128.7

Q ss_pred             CeEEEecCC-HhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           94 GVVVGHCGT-PARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        94 g~~~~~~~~-~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      |..+...|+ +++|++.+++++..+|       ....+|+.+|.++...|++++|+..|+++++++|++.  .+|+++|.
T Consensus       138 g~~l~~~g~d~~eAl~~~~~al~l~P-------~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~--~a~~~lg~  208 (382)
T 2h6f_A          138 RVLLKSLQKDLHEEMNYITAIIEEQP-------KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY--HAWQHRQW  208 (382)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH--HHHHHHHH
T ss_pred             HHHHHHcccCHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCH--HHHHHHHH
Confidence            455566776 9999999999999998       8899999999999999999999999999999999987  99999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHhccCCCchhhhhhhhhc
Q 026145          173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLA-MDQYDAA-----EKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ++..+|++++|+..|+++++++|++..+|+++|.++.. .|.+++|     +..|.+++.++|++..+|.+++.+
T Consensus       209 ~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~l  283 (382)
T 2h6f_A          209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGI  283 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999 5555777     599999999999999999887654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.76  E-value=1.1e-17  Score=148.63  Aligned_cols=114  Identities=24%  Similarity=0.328  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG  205 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  205 (243)
                      .++.+++++|.++.++|++++|+..|+++++++|++.  .+++++|.++..+|++++|+..|+++++++|+++.+++++|
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~--~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg   84 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA--AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG   84 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            8899999999999999999999999999999999987  99999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          206 DVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      .+|..+|++++|++.|+++++++|++..++..++.+
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~  120 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI  120 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999888765

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.75  E-value=7.9e-18  Score=128.00  Aligned_cols=112  Identities=20%  Similarity=0.176  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHh----------------HHHHHHHcCCHHHHHHHHHHHH
Q 026145          128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKD----------------RCLARLTMGNFSAALEDVREAL  191 (243)
Q Consensus       128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~al  191 (243)
                      +..++..|..++..|++++|+..|++++..+|+++  .+++.                +|.++..+|++++|+..|++++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   81 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT--EMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL   81 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH--HHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh--HHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            56788999999999999999999999999999977  88998                9999999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          192 ELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       192 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      +++|+++.+++.+|.++...|++++|+..|+++++++|+++.++..++.+
T Consensus        82 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~  131 (208)
T 3urz_A           82 QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNY  131 (208)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999877654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.75  E-value=1.8e-18  Score=141.12  Aligned_cols=135  Identities=19%  Similarity=0.258  Sum_probs=120.0

Q ss_pred             cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-------------hHHH
Q 026145          100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-------------IHVL  166 (243)
Q Consensus       100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------------~~~~  166 (243)
                      .+++++|++.++..+...|       ..+..++.+|..++..|+|++|+..|++++.+.|.+.             ...+
T Consensus       126 L~~~~~A~~~~~~a~~~~p-------~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~  198 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEEKL-------EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLAS  198 (336)
T ss_dssp             EEEEECCCCGGGCCHHHHH-------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHHHHH-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHH
Confidence            3466666666665554444       7888999999999999999999999999999999871             0389


Q ss_pred             HHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          167 YKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       167 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      |.++|.++..+|+|++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|+++.++..++.+
T Consensus       199 ~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~  273 (336)
T 1p5q_A          199 HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC  273 (336)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999998877654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.75  E-value=7.6e-17  Score=110.06  Aligned_cols=113  Identities=21%  Similarity=0.380  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 026145          127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGD  206 (243)
Q Consensus       127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  206 (243)
                      .+..++.+|..+...|++++|+..|++++..+|.+.  .++..+|.++...|++++|+..++++++.+|+++.+++.+|.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~   80 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH--VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            467899999999999999999999999999999987  999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          207 VFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       207 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ++...|++++|+..+++++.++|+++.++..++.+
T Consensus        81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            99999999999999999999999999998877654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.74  E-value=3.9e-17  Score=114.15  Aligned_cols=116  Identities=23%  Similarity=0.397  Sum_probs=110.1

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 026145          124 KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYIC  203 (243)
Q Consensus       124 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  203 (243)
                      ......+++.+|..+...|++++|+..|++++..+|++.  .++..+|.++...|++++|+..++++++.+|.++.+++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   89 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA--KLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR   89 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH--HHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHH
Confidence            347788999999999999999999999999999999987  999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          204 QGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       204 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      +|.++...|++++|+..+++++.++|++..++..++.+
T Consensus        90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  127 (133)
T 2lni_A           90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC  127 (133)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            99999999999999999999999999999988877665

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.74  E-value=2.8e-18  Score=123.85  Aligned_cols=106  Identities=8%  Similarity=-0.010  Sum_probs=98.1

Q ss_pred             HHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 026145          134 RAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQ  213 (243)
Q Consensus       134 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  213 (243)
                      +|.++..+|++++|++.+++++..+|+++  ..++.+|.+|+.+|+|++|+..|+++++++|+++.+|+.+|.+|..+|+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~--~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~   80 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKS--IKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN   80 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHH--TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence            67888889999999999999999999976  8899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          214 YDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       214 ~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      +++|+..|+++++++|+++.++..++.+
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~la~~  108 (150)
T 4ga2_A           81 TDKAVECYRRSVELNPTQKDLVLKIAEL  108 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999999999888765

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.74  E-value=8.6e-17  Score=124.82  Aligned_cols=146  Identities=20%  Similarity=0.256  Sum_probs=129.3

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcc--------------------hhhHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDA--------------------AKNLEALALRKRAEAEFEKANFSEADGFLSQ  153 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~--------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  153 (243)
                      |..+...|++++|.+.+++++...+. ..                    ..+..+..+..+|.++...|++++|+..|++
T Consensus        86 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  164 (258)
T 3uq3_A           86 GNAYHKLGDLKKTIEYYQKSLTEHRT-ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTE  164 (258)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCch-hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            45566777888888888888873320 00                    1127788999999999999999999999999


Q ss_pred             hhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-----
Q 026145          154 AIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID-----  228 (243)
Q Consensus       154 al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----  228 (243)
                      ++..+|.++  .++..+|.++...|++++|+..++++++.+|+++.++..+|.++..+|++++|+..++++++++     
T Consensus       165 a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  242 (258)
T 3uq3_A          165 MIKRAPEDA--RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN  242 (258)
T ss_dssp             HHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhcCcccH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcC
Confidence            999999987  9999999999999999999999999999999999999999999999999999999999999999     


Q ss_pred             -CCchhhhhhhhhcc
Q 026145          229 -PSIRRSKSFKVSST  242 (243)
Q Consensus       229 -p~~~~~~~~~a~i~  242 (243)
                       |++..++..++++.
T Consensus       243 ~p~~~~~~~~l~~~~  257 (258)
T 3uq3_A          243 GSSAREIDQLYYKAS  257 (258)
T ss_dssp             TTTHHHHHHHHHHTT
T ss_pred             CCchHHHHHHHHHhh
Confidence             99999998887764

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.73  E-value=4.8e-17  Score=114.73  Aligned_cols=112  Identities=27%  Similarity=0.321  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG  205 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  205 (243)
                      ..+..++.+|..++..|+|++|+..|.+++..+|+++  .++.++|.++..+|++++|+..++++++++|+++.+++.+|
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA--VYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            4577899999999999999999999999999999987  99999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCC-----chhhhhhhh
Q 026145          206 DVFLAMDQYDAAEKSYSTCLQIDPS-----IRRSKSFKV  239 (243)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~a  239 (243)
                      .++..+|++++|+..|++++.++|+     +..+...+.
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~  123 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR  123 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHH
Confidence            9999999999999999999999998     555554443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.73  E-value=9.8e-18  Score=117.43  Aligned_cols=106  Identities=18%  Similarity=0.075  Sum_probs=100.3

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |..|...|++++|++.|++++...|       ..+..++.+|.++...|++++|+..|+++++++|++.  .+|+++|.+
T Consensus        20 G~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~a~~~lg~~   90 (126)
T 4gco_A           20 GNEYFKKGDYPTAMRHYNEAVKRDP-------ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI--KGYIRKAAC   90 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh--HHHHHHHHH
Confidence            5567788999999999999999998       7889999999999999999999999999999999987  999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVF  208 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  208 (243)
                      +..+|++++|+..|+++++++|++..++..++.++
T Consensus        91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           91 LVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            99999999999999999999999999999998764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.73  E-value=8.3e-18  Score=149.32  Aligned_cols=139  Identities=12%  Similarity=-0.017  Sum_probs=131.5

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |..+...|++++|++.+++++...|       .++.+++.+|.++...|++++|+..|+++++++|++.  .+++++|.+
T Consensus       440 a~~~~~~g~~~~A~~~~~~al~~~p-------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~lg~~  510 (681)
T 2pzi_A          440 VRALLDLGDVAKATRKLDDLAERVG-------WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL--APKLALAAT  510 (681)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS--HHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHhccCc-------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHH
Confidence            5566778899999999999998888       7789999999999999999999999999999999988  999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhcc
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSST  242 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i~  242 (243)
                      +..+|++++ +..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++..++..++.+.
T Consensus       511 ~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~  578 (681)
T 2pzi_A          511 AELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL  578 (681)
T ss_dssp             HHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred             HHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence            999999999 99999999999999999999999999999999999999999999999999998777653

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.73  E-value=4.4e-18  Score=144.42  Aligned_cols=136  Identities=13%  Similarity=0.204  Sum_probs=115.9

Q ss_pred             ecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-------------hHH
Q 026145           99 HCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-------------IHV  165 (243)
Q Consensus        99 ~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------------~~~  165 (243)
                      ..+++++|++.++..+...|       ..+..++.+|..+++.|+|++|+..|++++.+.|.+.             ...
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~-------~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~  318 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKL-------EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA  318 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHH-------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHH
Confidence            34466666666655444444       7788999999999999999999999999999999871             038


Q ss_pred             HHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          166 LYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       166 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      +|+++|.++.++|+|++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.+
T Consensus       319 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~  394 (457)
T 1kt0_A          319 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMC  394 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988877654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.73  E-value=5.9e-17  Score=127.10  Aligned_cols=144  Identities=14%  Similarity=0.107  Sum_probs=124.3

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRC  171 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la  171 (243)
                      .|..+...|++++|++.|++++...|.    ......+++.+|.+++..|++++|+..|++++..+|+++ ...+++.+|
T Consensus        21 ~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg   96 (261)
T 3qky_A           21 RAMEFYNQGKYDRAIEYFKAVFTYGRT----HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERA   96 (261)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHGGGCSC----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCC----CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHH
Confidence            456667788999999999999988761    113378999999999999999999999999999998653 357899999


Q ss_pred             HHHHH--------cCCHHHHHHHHHHHHHhCCCcHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145          172 LARLT--------MGNFSAALEDVREALELAPNYTEAY-----------------ICQGDVFLAMDQYDAAEKSYSTCLQ  226 (243)
Q Consensus       172 ~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~~A~~~~~~al~  226 (243)
                      .++..        +|++++|+..|+++++.+|+++.+.                 +.+|.+|...|++++|+..|++++.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  176 (261)
T 3qky_A           97 MCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFD  176 (261)
T ss_dssp             HHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            99999        9999999999999999999886655                 8899999999999999999999999


Q ss_pred             cCCCch---hhhhhhhh
Q 026145          227 IDPSIR---RSKSFKVS  240 (243)
Q Consensus       227 ~~p~~~---~~~~~~a~  240 (243)
                      .+|+++   .++..++.
T Consensus       177 ~~p~~~~~~~a~~~l~~  193 (261)
T 3qky_A          177 AYPDTPWADDALVGAMR  193 (261)
T ss_dssp             HCTTSTTHHHHHHHHHH
T ss_pred             HCCCCchHHHHHHHHHH
Confidence            999854   45555443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.72  E-value=2.5e-16  Score=109.39  Aligned_cols=116  Identities=28%  Similarity=0.422  Sum_probs=109.6

Q ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 026145          124 KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYIC  203 (243)
Q Consensus       124 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  203 (243)
                      ....+..++.+|..+...|++++|+..|++++...|++.  .++..+|.++...|++++|+..+++++..+|+++.+++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   85 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA--VYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR   85 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence            346788999999999999999999999999999999977  999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          204 QGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       204 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      +|.++...|++++|+..+++++.++|+++.++..++.+
T Consensus        86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  123 (131)
T 2vyi_A           86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA  123 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence            99999999999999999999999999999888777654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.72  E-value=1.1e-16  Score=114.07  Aligned_cols=116  Identities=17%  Similarity=0.238  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQ  204 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  204 (243)
                      ..+..++.+|..++..|++++|+..|+++++..|++. ...++.++|.++..+|++++|+..++++++.+|+++.+++.+
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  105 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR  105 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence            5677899999999999999999999999999999861 138999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          205 GDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       205 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      |.++..+|++++|+..|++++.++|+++.++..++++
T Consensus       106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (148)
T 2dba_A          106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI  142 (148)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            9999999999999999999999999999998877664

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.72  E-value=1.1e-16  Score=117.95  Aligned_cols=138  Identities=12%  Similarity=0.114  Sum_probs=118.8

Q ss_pred             eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHH
Q 026145           95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLAR  174 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~  174 (243)
                      ..+...|++++|.+.+++++...|       .....++.+|.++...|++++|+..+++++...|.+.  .++..+|.++
T Consensus        16 ~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~   86 (186)
T 3as5_A           16 ISHAKAGRYSQAVMLLEQVYDADA-------FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV--KVATVLGLTY   86 (186)
T ss_dssp             HHHHHHTCHHHHHHHHTTTCCTTS-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhCc-------cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHH
Confidence            344556788999999988887776       5577888899999999999999999999999988876  8888999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          175 LTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       175 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..++.+
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  153 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFS  153 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999888877766654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.72  E-value=6e-17  Score=124.84  Aligned_cols=140  Identities=13%  Similarity=0.081  Sum_probs=103.0

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      .|..+...|++++|...+++++...|       .....+..+|.++...|++++|+..|++++..+|.+.  .++..+|.
T Consensus        29 ~a~~~~~~~~~~~A~~~~~~~l~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~   99 (243)
T 2q7f_A           29 QMGRGSEFGDYEKAAEAFTKAIEENK-------EDAIPYINFANLLSSVNELERALAFYDKALELDSSAA--TAYYGAGN   99 (243)
T ss_dssp             -------------CCTTHHHHHTTCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH
T ss_pred             HHHHHHHhhCHHHHHHHHHHHHHhCc-------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcch--HHHHHHHH
Confidence            46666777788888888888887776       5577788888888888888888888888888888766  78888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++..+|+++.++..++.+
T Consensus       100 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  168 (243)
T 2q7f_A          100 VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMC  168 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence            888888888888888888888888888888888888888888888888888888888877777665543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.72  E-value=1.8e-17  Score=124.79  Aligned_cols=116  Identities=11%  Similarity=0.100  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc--------------hHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG--------------IHVLYKDRCLARLTMGNFSAALEDVREAL  191 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--------------~~~~~~~la~~~~~~~~~~~A~~~~~~al  191 (243)
                      ..+..+..+|..++..|+|++|+..|.+++...|.++              ...++.++|.++..+|++++|+..+++++
T Consensus        36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  115 (198)
T 2fbn_A           36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL  115 (198)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            6778899999999999999999999999999988753              02789999999999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          192 ELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       192 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      +++|.++.+++.+|.+|..+|++++|+..|++++.++|+++.++..++.+
T Consensus       116 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  165 (198)
T 2fbn_A          116 KIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC  165 (198)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988777654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.71  E-value=1.3e-16  Score=123.01  Aligned_cols=138  Identities=13%  Similarity=0.030  Sum_probs=97.0

Q ss_pred             eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHH
Q 026145           95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLAR  174 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~  174 (243)
                      ..+...|++++|.+.+++++...|       .....+..+|.++...|++++|+..+++++...|++.  .++..+|.++
T Consensus        99 ~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~  169 (243)
T 2q7f_A           99 NVYVVKEMYKEAKDMFEKALRAGM-------ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDT--EARFQFGMCL  169 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTC-------CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccH--HHHHHHHHHH
Confidence            344556677777777777666655       4455666777777777777777777777777777655  6777777777


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          175 LTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       175 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++++|+++.++..++.+
T Consensus       170 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l  236 (243)
T 2q7f_A          170 ANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL  236 (243)
T ss_dssp             HHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred             HHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence            7777777777777777777777777777777777777777777777777777777777776666554

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.71  E-value=6.9e-17  Score=137.68  Aligned_cols=139  Identities=12%  Similarity=0.056  Sum_probs=129.2

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHhhccCCCCch
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEK---------ANFSEADGFLSQAIELKPFGGI  163 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~~  163 (243)
                      .|..|...|++++|.+.|++++...|       . ..++..+|.++...         |++++|+..|+++++++|++. 
T Consensus       143 lg~~~~~~g~~~~A~~~~~~al~~~p-------~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-  213 (474)
T 4abn_A          143 LGEVYWKKGDVTSAHTCFSGALTHCK-------N-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG-  213 (474)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHTTCC-------C-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCH-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCC-------C-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCH-
Confidence            35566778899999999999998887       5 58899999999999         999999999999999999987 


Q ss_pred             HHHHHhHHHHHHHc--------CCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 026145          164 HVLYKDRCLARLTM--------GNFSAALEDVREALELAP---NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIR  232 (243)
Q Consensus       164 ~~~~~~la~~~~~~--------~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  232 (243)
                       .+|+++|.++..+        |++++|+..|+++++++|   +++.+++++|.+|..+|++++|++.|+++++++|+++
T Consensus       214 -~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  292 (474)
T 4abn_A          214 -RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP  292 (474)
T ss_dssp             -HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             -HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence             9999999999999        999999999999999999   9999999999999999999999999999999999999


Q ss_pred             hhhhhhhhc
Q 026145          233 RSKSFKVSS  241 (243)
Q Consensus       233 ~~~~~~a~i  241 (243)
                      .++..++.+
T Consensus       293 ~a~~~l~~~  301 (474)
T 4abn_A          293 EPQQREQQL  301 (474)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888776654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.71  E-value=3.7e-16  Score=113.44  Aligned_cols=115  Identities=29%  Similarity=0.431  Sum_probs=107.9

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 026145          123 AKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYI  202 (243)
Q Consensus       123 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  202 (243)
                      .....+..++.+|..++..|++++|+..|.+++..+|.+.  .++.++|.++...|++++|+..++++++.+|.++.+++
T Consensus         8 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~   85 (166)
T 1a17_A            8 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA--IYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY   85 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            3446788899999999999999999999999999999987  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145          203 CQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       203 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  239 (243)
                      .+|.++..+|++++|+..+++++.++|+++.++..+.
T Consensus        86 ~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~  122 (166)
T 1a17_A           86 RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ  122 (166)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            9999999999999999999999999999988875443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.71  E-value=1e-16  Score=139.45  Aligned_cols=132  Identities=16%  Similarity=0.097  Sum_probs=97.4

Q ss_pred             CCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCH
Q 026145          101 GTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNF  180 (243)
Q Consensus       101 ~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~  180 (243)
                      |++++|.+.+++++...|       ..+.+++.+|.++...|++++|+..|+++++.+|++.  .++.++|.++..+|++
T Consensus         3 g~~~~A~~~~~~al~~~p-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~   73 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRP-------QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP--EAVARLGRVRWTQQRH   73 (568)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH--HHHHHHHHHHHHTTCH
T ss_pred             ccHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCH
Confidence            477888888888887776       6677888888888888888888888888888888876  8888888888888888


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          181 SAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       181 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ++|+..++++++++|+++.+++++|.+|..+|++++|++.|+++++++|+++.++..++.+
T Consensus        74 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  134 (568)
T 2vsy_A           74 AEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNW  134 (568)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            8888888888888888888888888888888888888888888888888888777666554

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.71  E-value=6.1e-17  Score=132.69  Aligned_cols=130  Identities=13%  Similarity=0.098  Sum_probs=118.7

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhH--HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNL--EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDR  170 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l  170 (243)
                      .+..+...|++++|.+.+++++...|       .  .+..++.+|.++...|++++|+..|+++++.+|++.  .+|.++
T Consensus       183 l~~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l  253 (365)
T 4eqf_A          183 MSKSPVDSSVLEGVKELYLEAAHQNG-------DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDY--SLWNRL  253 (365)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHSC-------SSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHH
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhCc-------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHH
Confidence            36677888899999999999998887       4  677899999999999999999999999999999987  999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145          171 CLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI  231 (243)
Q Consensus       171 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  231 (243)
                      |.++...|++++|+..|+++++++|+++.++..+|.+|..+|++++|+..|+++++++|++
T Consensus       254 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  314 (365)
T 4eqf_A          254 GATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS  314 (365)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999999999999999999999999999999999999873

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.71  E-value=3.2e-16  Score=115.35  Aligned_cols=136  Identities=15%  Similarity=0.130  Sum_probs=125.9

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      +..+...|++++|.+.+++++...|       .....+..+|..+...|++++|+..+++++...|.+.  .++..+|.+
T Consensus        49 ~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~  119 (186)
T 3as5_A           49 GIAYVKTGAVDRGTELLERSLADAP-------DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINF--NVRFRLGVA  119 (186)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhH--HHHHHHHHH
Confidence            4556678899999999999998877       6678899999999999999999999999999999987  999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhh
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFK  238 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  238 (243)
                      +...|++++|+..++++++..|.++.++..+|.++...|++++|...+++++.++|+++......
T Consensus       120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  184 (186)
T 3as5_A          120 LDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELALV  184 (186)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGGGGGS
T ss_pred             HHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhhHhhc
Confidence            99999999999999999999999999999999999999999999999999999999987765543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.71  E-value=1.4e-17  Score=141.86  Aligned_cols=139  Identities=12%  Similarity=0.127  Sum_probs=130.2

Q ss_pred             CCeEEEecCCH-hHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHH
Q 026145           93 DGVVVGHCGTP-ARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRC  171 (243)
Q Consensus        93 ~g~~~~~~~~~-~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la  171 (243)
                      .|..+...|++ ++|++.|++++...|       ..+.+|+.+|.++...|++++|+..|+++++++|+ .  .++.++|
T Consensus       108 lg~~~~~~g~~~~~A~~~~~~al~~~p-------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~lg  177 (474)
T 4abn_A          108 KGKALNVTPDYSPEAEVLLSKAVKLEP-------ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-K--VSLQNLS  177 (474)
T ss_dssp             HHHHHTSSSSCCHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-H--HHHHHHH
T ss_pred             HHHHHHhccccHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-H--HHHHHHH
Confidence            45666778899 999999999999888       77889999999999999999999999999999998 4  8999999


Q ss_pred             HHHHHc---------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--------CCHHHHHHHHHHHhccCC---Cc
Q 026145          172 LARLTM---------GNFSAALEDVREALELAPNYTEAYICQGDVFLAM--------DQYDAAEKSYSTCLQIDP---SI  231 (243)
Q Consensus       172 ~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p---~~  231 (243)
                      .++..+         |++++|+..|+++++++|+++.+|+++|.+|..+        |++++|+..|+++++++|   ++
T Consensus       178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  257 (474)
T 4abn_A          178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN  257 (474)
T ss_dssp             HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred             HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence            999999         9999999999999999999999999999999999        999999999999999999   99


Q ss_pred             hhhhhhhhhc
Q 026145          232 RRSKSFKVSS  241 (243)
Q Consensus       232 ~~~~~~~a~i  241 (243)
                      +.++..++.+
T Consensus       258 ~~~~~~lg~~  267 (474)
T 4abn_A          258 PDLHLNRATL  267 (474)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998887765

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.71  E-value=3e-16  Score=109.43  Aligned_cols=112  Identities=13%  Similarity=0.079  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHH
Q 026145          130 ALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELAPNY---TEAYICQG  205 (243)
Q Consensus       130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la  205 (243)
                      .++.+|..++..|++++|+..|++++..+|++. ...+++.+|.++...|++++|+..+++++..+|++   +.+++.+|
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            578899999999999999999999999999874 22589999999999999999999999999999999   89999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          206 DVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      .++..+|++++|+..|++++..+|+++.+.....++
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l  119 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL  119 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            999999999999999999999999998887666543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.70  E-value=2.7e-16  Score=123.35  Aligned_cols=133  Identities=19%  Similarity=0.112  Sum_probs=121.5

Q ss_pred             EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc
Q 026145           98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM  177 (243)
Q Consensus        98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~  177 (243)
                      ...+++++|++.+++++...+   ...+..+..++.+|.++...|++++|+..|++++..+|++.  .++..+|.++...
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~   90 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRA---LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP--EVFNYLGIYLTQA   90 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHT
T ss_pred             CccchHHHHHHHHHHHHhccc---ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHc
Confidence            445699999999999997642   12336788999999999999999999999999999999987  9999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhh
Q 026145          178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK  235 (243)
Q Consensus       178 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  235 (243)
                      |++++|+..++++++++|.++.++..+|.++...|++++|+..+++++.++|+++...
T Consensus        91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  148 (275)
T 1xnf_A           91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRS  148 (275)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHH
Confidence            9999999999999999999999999999999999999999999999999999987543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.70  E-value=5.6e-16  Score=107.93  Aligned_cols=126  Identities=25%  Similarity=0.351  Sum_probs=116.7

Q ss_pred             EEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHH
Q 026145           97 VGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLT  176 (243)
Q Consensus        97 ~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~  176 (243)
                      +...|++++|.+.+++++...|       .....++.+|..+...|++++|+..+++++...|.+.  .++..+|.++..
T Consensus        11 ~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~   81 (136)
T 2fo7_A           11 YYKQGDYDEAIEYYQKALELDP-------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA--EAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHT
T ss_pred             HHHcCcHHHHHHHHHHHHHcCC-------cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch--HHHHHHHHHHHH
Confidence            3456799999999999987776       5577889999999999999999999999999999976  899999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145          177 MGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI  231 (243)
Q Consensus       177 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  231 (243)
                      .|++++|+..+++++...|.+..++..+|.++...|++++|...+.+++..+|++
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            9999999999999999999999999999999999999999999999999998863

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.70  E-value=2.1e-16  Score=130.65  Aligned_cols=136  Identities=21%  Similarity=0.168  Sum_probs=82.6

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHH
Q 026145           96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL  175 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~  175 (243)
                      .+...|++++|.+.+++++...|       ..+..+..+|.++...|++++|+..|+++++..|.+.  .++.++|.++.
T Consensus       246 ~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~  316 (388)
T 1w3b_A          246 VYYEQGLIDLAIDTYRRAIELQP-------HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA--DSLNNLANIKR  316 (388)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCS-------SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH--HHHHHHHHHHH
Confidence            33445556666666666555554       4445556666666666666666666666666666654  56666666666


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       176 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      ..|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.++..++.
T Consensus       317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~  381 (388)
T 1w3b_A          317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN  381 (388)
T ss_dssp             TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHH
Confidence            66666666666666666666666666666666666666666666666666666666666555443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.70  E-value=7e-16  Score=116.91  Aligned_cols=128  Identities=15%  Similarity=0.134  Sum_probs=115.6

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |..+...|++++|++.+++++..          .+.+++.+|.++...|++++|+..|++++..+|++.  .+++++|.+
T Consensus        13 g~~~~~~~~~~~A~~~~~~a~~~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~lg~~   80 (213)
T 1hh8_A           13 GVLAADKKDWKGALDAFSAVQDP----------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA--VAYFQRGML   80 (213)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSSSC----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHcCC----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch--HHHHHHHHH
Confidence            33445678999999999987521          356899999999999999999999999999999977  999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 026145          174 RLTMGNFSAALEDVREALELAPNYT----------------EAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRR  233 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  233 (243)
                      +..+|++++|+..++++++..|.+.                .+++++|.++..+|++++|+..+++++.++|++..
T Consensus        81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  156 (213)
T 1hh8_A           81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH  156 (213)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence            9999999999999999999888766                99999999999999999999999999999997654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.70  E-value=5.3e-17  Score=144.15  Aligned_cols=133  Identities=15%  Similarity=0.069  Sum_probs=125.3

Q ss_pred             ecCCHhHHHHHHHHHh--------cCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhH
Q 026145           99 HCGTPARASEILMVLC--------GIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDR  170 (243)
Q Consensus        99 ~~~~~~~a~~~l~~~l--------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l  170 (243)
                      ..|++++|++.+++++        ...|       ..+.+++.+|.++...|++++|+..|+++++.+|++.  .+|+++
T Consensus       403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p-------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~l  473 (681)
T 2pzi_A          403 VLSQPVQTLDSLRAARHGALDADGVDFS-------ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW--RLVWYR  473 (681)
T ss_dssp             TTCCHHHHHHHHHHHHTC-------CCT-------TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH--HHHHHH
T ss_pred             cccCHHHHHHHHHHhhhhcccccccccc-------cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH--HHHHHH
Confidence            4668999999999999        6666       6778999999999999999999999999999999987  999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          171 CLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       171 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      |.++..+|++++|+..|+++++++|+++.+++++|.++..+|++++ +..|+++++++|++..++..++.+
T Consensus       474 g~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~  543 (681)
T 2pzi_A          474 AVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA  543 (681)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999 999999999999999999888765

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.69  E-value=1.3e-16  Score=125.14  Aligned_cols=138  Identities=14%  Similarity=0.040  Sum_probs=122.4

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc--hHHHHHhHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG--IHVLYKDRC  171 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~la  171 (243)
                      |..+...|++++|++.+++++...|       ..+.+++.+|.++...|++++|+..|++++. .|.++  ...++..+|
T Consensus        10 a~~~~~~~~~~~A~~~~~~~l~~~p-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A           10 ADFLFKNNNYAEAIEVFNKLEAKKY-------NSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG   81 (272)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHTTC-------CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence            3445667899999999999998887       5566899999999999999999999999999 44433  245689999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145          172 LARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       172 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  239 (243)
                      .++..+|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++.++|+++.++..++
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~  149 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG  149 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999888776

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.69  E-value=9.6e-16  Score=105.48  Aligned_cols=114  Identities=26%  Similarity=0.398  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG  205 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  205 (243)
                      ..+..++.+|..+...|++++|+..|++++...|.+.  .++..+|.++...|++++|+..+++++..+|.++.++..+|
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la   84 (125)
T 1na0_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG   84 (125)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence            3467899999999999999999999999999999977  89999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          206 DVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      .++...|++++|+..+++++.++|+++.++..++.+
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  120 (125)
T 1na0_A           85 NAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA  120 (125)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            999999999999999999999999999988877654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.69  E-value=4.7e-16  Score=124.92  Aligned_cols=139  Identities=17%  Similarity=0.216  Sum_probs=117.9

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccC---------CCCchH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELK---------PFGGIH  164 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~  164 (243)
                      +..+...|++++|.+.+++++...|       ..+..+..+|.++...|++++|+..|++++...         |...  
T Consensus       166 ~~~~~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~--  236 (330)
T 3hym_B          166 GLEYGLTNNSKLAERFFSQALSIAP-------EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE--  236 (330)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC--
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCC-------CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH--
Confidence            4455667788888888888888777       667788888999999999999999999998875         4444  


Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          165 VLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      .++.++|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++++|+++.++..++.+
T Consensus       237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  313 (330)
T 3hym_B          237 PLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHC  313 (330)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHH
Confidence            78889999999999999999999999999999999999999999999999999999999999999988888776653

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.69  E-value=3.4e-16  Score=121.46  Aligned_cols=147  Identities=12%  Similarity=0.127  Sum_probs=128.5

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhc----------------
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIE----------------  156 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----------------  156 (243)
                      .|..+...|++++|.+.+++++...|.........+..++.+|.++...|++++|+..|++++.                
T Consensus        44 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  123 (258)
T 3uq3_A           44 RAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEK  123 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHH
Confidence            3556677889999999999998766511112223378999999999999999999999999999                


Q ss_pred             ----------cCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145          157 ----------LKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ  226 (243)
Q Consensus       157 ----------~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  226 (243)
                                .+|.+.  .++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++.
T Consensus       124 a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  201 (258)
T 3uq3_A          124 ELKKAEAEAYVNPEKA--EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE  201 (258)
T ss_dssp             HHHHHHHHHHCCHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcchH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence                      555544  88999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCchhhhhhhhhc
Q 026145          227 IDPSIRRSKSFKVSS  241 (243)
Q Consensus       227 ~~p~~~~~~~~~a~i  241 (243)
                      ++|+++.++..++.+
T Consensus       202 ~~~~~~~~~~~l~~~  216 (258)
T 3uq3_A          202 KDPNFVRAYIRKATA  216 (258)
T ss_dssp             HCTTCHHHHHHHHHH
T ss_pred             hCHHHHHHHHHHHHH
Confidence            999999998877665

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.69  E-value=5.9e-16  Score=127.92  Aligned_cols=136  Identities=18%  Similarity=0.145  Sum_probs=95.7

Q ss_pred             EEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHH
Q 026145           97 VGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLT  176 (243)
Q Consensus        97 ~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~  176 (243)
                      +...|++++|...+++++...|       ..+..+..+|.++...|++++|+..|+++++.+|+++  .++.++|.++..
T Consensus       213 ~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~  283 (388)
T 1w3b_A          213 LKEARIFDRAVAAYLRALSLSP-------NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP--DAYCNLANALKE  283 (388)
T ss_dssp             HHTTTCTTHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH--HHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhhCc-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHH
Confidence            3344555566666655555554       4556667777777777777777777777777777765  777777777777


Q ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          177 MGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       177 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      .|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++++|++..++..++.+
T Consensus       284 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  348 (388)
T 1w3b_A          284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV  348 (388)
T ss_dssp             HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777666655443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.68  E-value=9.3e-16  Score=116.51  Aligned_cols=138  Identities=15%  Similarity=0.027  Sum_probs=118.0

Q ss_pred             eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHH
Q 026145           95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLAR  174 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~  174 (243)
                      ..+...|++++|.+.+++++...|       .....+..+|.++...|++++|+..|++++...|.+.  .++..+|.++
T Consensus        16 ~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~   86 (225)
T 2vq2_A           16 MEYMRGQDYRQATASIEDALKSDP-------KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA--EINNNYGWFL   86 (225)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhCc-------cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--HHHHHHHHHH
Confidence            344567789999999999888776       5577888899999999999999999999999998876  8888999999


Q ss_pred             HHc-CCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          175 LTM-GNFSAALEDVREALE--LAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       175 ~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ... |++++|+..++++++  ..|.+..+++.+|.++...|++++|+..+++++..+|+++.++..++.+
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  156 (225)
T 2vq2_A           87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELART  156 (225)
T ss_dssp             HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            999 999999999999988  6677788899999999999999999999999999999888877766654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.68  E-value=1.8e-16  Score=129.81  Aligned_cols=138  Identities=19%  Similarity=0.154  Sum_probs=82.3

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCC-------------
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPF-------------  160 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------------  160 (243)
                      |..+...|++++|++.+++++...|       ..+.++..+|.++...|++++|+..|++++...|+             
T Consensus       106 g~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  178 (365)
T 4eqf_A          106 GITQAENENEQAAIVALQRCLELQP-------NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPG  178 (365)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC---------
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchH
Confidence            3344455566666666666665554       44555555666665555555555555555544332             


Q ss_pred             ---------------------------------CchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 026145          161 ---------------------------------GGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDV  207 (243)
Q Consensus       161 ---------------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  207 (243)
                                                       ++  .++.++|.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus       179 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  256 (365)
T 4eqf_A          179 LTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDP--DLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGAT  256 (365)
T ss_dssp             ----------CCHHHHHHHHHHHHHHHHSCSSCCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence                                             22  4556666666666666666666666666666666666666666


Q ss_pred             HHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          208 FLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       208 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      +...|++++|+..|+++++++|+++.++..++.
T Consensus       257 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  289 (365)
T 4eqf_A          257 LANGDRSEEAVEAYTRALEIQPGFIRSRYNLGI  289 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence            666666666666666666666666666555544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.68  E-value=2.1e-16  Score=123.96  Aligned_cols=140  Identities=14%  Similarity=0.057  Sum_probs=123.0

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHH--------hcCHHHHHHHHHHhhccCCCCchH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFE--------KANFSEADGFLSQAIELKPFGGIH  164 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~  164 (243)
                      .|..|...|++++|+..|++++...|+.    .....+++.+|.++..        .|++++|+..|++++..+|++.  
T Consensus        58 lg~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~--  131 (261)
T 3qky_A           58 LARAYYQNKEYLLAASEYERFIQIYQID----PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE--  131 (261)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTC----TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT--
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHCCCC----chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch--
Confidence            4566778899999999999999876511    2556789999999999        9999999999999999999876  


Q ss_pred             HHH-----------------HhHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHc----------CCH
Q 026145          165 VLY-----------------KDRCLARLTMGNFSAALEDVREALELAPN---YTEAYICQGDVFLAM----------DQY  214 (243)
Q Consensus       165 ~~~-----------------~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~  214 (243)
                      .+.                 +.+|.++..+|++++|+..|+++++..|+   .+.+++.+|.+|..+          |++
T Consensus       132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~  211 (261)
T 3qky_A          132 LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERY  211 (261)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchH
Confidence            444                 88899999999999999999999999998   567999999999987          999


Q ss_pred             HHHHHHHHHHhccCCCchhhhhhh
Q 026145          215 DAAEKSYSTCLQIDPSIRRSKSFK  238 (243)
Q Consensus       215 ~~A~~~~~~al~~~p~~~~~~~~~  238 (243)
                      ++|+..|+++++.+|+++.+....
T Consensus       212 ~~A~~~~~~~~~~~p~~~~~~~a~  235 (261)
T 3qky_A          212 RRAVELYERLLQIFPDSPLLRTAE  235 (261)
T ss_dssp             HHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCChHHHHHH
Confidence            999999999999999997655443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.68  E-value=1.7e-15  Score=117.59  Aligned_cols=139  Identities=22%  Similarity=0.164  Sum_probs=121.5

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhc--cCCCCchHHHHHhHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIE--LKPFGGIHVLYKDRC  171 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~la  171 (243)
                      +..+...|++++|.+.+++++...|       .....+..+|..+...|++++|+..|++++.  ..|.+.  .++..+|
T Consensus        78 a~~~~~~~~~~~A~~~~~~a~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~la  148 (252)
T 2ho1_A           78 AVVFQTEMEPKLADEEYRKALASDS-------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERS--RVFENLG  148 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHH--HHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCc-------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccH--HHHHHHH
Confidence            4556678899999999999988776       5677888999999999999999999999998  777755  8899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          172 LARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       172 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      .++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++..+|++..++..++.+
T Consensus       149 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  218 (252)
T 2ho1_A          149 LVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRL  218 (252)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999888877665543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.67  E-value=1.4e-16  Score=114.34  Aligned_cols=99  Identities=16%  Similarity=0.212  Sum_probs=91.4

Q ss_pred             HHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 026145          139 FEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNF----------SAALEDVREALELAPNYTEAYICQGDVF  208 (243)
Q Consensus       139 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~  208 (243)
                      .+.+.|++|+..|+++++++|+++  .+|+++|.++..++++          ++|+..|+++|+++|++..+|+++|.+|
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~a--ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay   90 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDA--DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   90 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence            456789999999999999999988  9999999999999875          5999999999999999999999999999


Q ss_pred             HHcC-----------CHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145          209 LAMD-----------QYDAAEKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       209 ~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~a  239 (243)
                      ..+|           ++++|++.|++|++++|++...+..+.
T Consensus        91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~  132 (158)
T 1zu2_A           91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE  132 (158)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            9885           899999999999999999988776654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.67  E-value=4.4e-16  Score=127.31  Aligned_cols=134  Identities=13%  Similarity=0.099  Sum_probs=124.5

Q ss_pred             ecCCHhHHHHHHHHHhcCCCCCcchhhH--HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHH
Q 026145           99 HCGTPARASEILMVLCGIKSDHDAAKNL--EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLT  176 (243)
Q Consensus        99 ~~~~~~~a~~~l~~~l~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~  176 (243)
                      ..|++++|.+.+++++...|       .  .+..+..+|.++...|++++|+..|++++..+|+++  .++.++|.++..
T Consensus       193 ~~~~~~~A~~~~~~a~~~~p-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~l~~~~~~  263 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRLDP-------TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY--LLWNKLGATLAN  263 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHST-------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHH
T ss_pred             hcccHHHHHHHHHHHHHhCc-------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH--HHHHHHHHHHHH
Confidence            66799999999999998887       4  678899999999999999999999999999999987  999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc-----------hhhhhhhhhc
Q 026145          177 MGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI-----------RRSKSFKVSS  241 (243)
Q Consensus       177 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------~~~~~~~a~i  241 (243)
                      .|++++|+..++++++++|+++.++..+|.++..+|++++|+..|++++.++|++           ..++..++.+
T Consensus       264 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~  339 (368)
T 1fch_A          264 GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLA  339 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999988           6677665543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.67  E-value=1e-15  Score=122.91  Aligned_cols=137  Identities=12%  Similarity=0.005  Sum_probs=126.1

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHhhccCCCCchHHHHHhHHHHH
Q 026145           96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKA-NFSEADGFLSQAIELKPFGGIHVLYKDRCLAR  174 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~  174 (243)
                      .+...|++++|...+++++...|       ..+..++.+|.++...| ++++|+..|++++..+|++.  .++..+|.++
T Consensus        65 ~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~  135 (330)
T 3hym_B           65 TLVELNKANELFYLSHKLVDLYP-------SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG--PAWIAYGHSF  135 (330)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCT-------TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCT--HHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHhCc-------CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccH--HHHHHHHHHH
Confidence            34567799999999999998887       67788999999999999 99999999999999999987  9999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          175 LTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       175 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ...|++++|+..++++++..|++..++..+|.++...|++++|+..+++++..+|+++.++..++.+
T Consensus       136 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~  202 (330)
T 3hym_B          136 AVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV  202 (330)
T ss_dssp             HHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999888777654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.67  E-value=4.1e-15  Score=115.36  Aligned_cols=137  Identities=7%  Similarity=-0.001  Sum_probs=127.7

Q ss_pred             CeEEEecCCHhHHHHHHHHHhc--CCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHH
Q 026145           94 GVVVGHCGTPARASEILMVLCG--IKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRC  171 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la  171 (243)
                      +..+...|++++|.+.+++++.  ..|       .....+..+|.++...|++++|+..|++++...|.+.  .++..+|
T Consensus       112 a~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~la  182 (252)
T 2ho1_A          112 GGFLYEQKRYEEAYQRLLEASQDTLYP-------ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQP--SVALEMA  182 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTCTTCT-------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH--HHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhCccCc-------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccH--HHHHHHH
Confidence            4556778899999999999998  555       6788999999999999999999999999999999977  9999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145          172 LARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       172 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  239 (243)
                      .++...|++++|+..++++++..|.+..++..++.++...|++++|...++++++++|+++.++..+.
T Consensus       183 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  250 (252)
T 2ho1_A          183 DLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQA  250 (252)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999887654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.66  E-value=3.8e-16  Score=105.64  Aligned_cols=105  Identities=10%  Similarity=0.152  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPN--YTEAYIC  203 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~  203 (243)
                      ..+..++.+|.++...|++++|+..|+++++.+|.+.  .++.++|.++..+|++++|+..++++++.+|.  +..+++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEES--KYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            3456788899999999999999999999999999977  99999999999999999999999999999999  9999999


Q ss_pred             HHHHHHHc-CCHHHHHHHHHHHhccCCCch
Q 026145          204 QGDVFLAM-DQYDAAEKSYSTCLQIDPSIR  232 (243)
Q Consensus       204 la~~~~~~-g~~~~A~~~~~~al~~~p~~~  232 (243)
                      +|.++..+ |++++|++.+.+++..+|+++
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            99999999 999999999999999999764

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.66  E-value=1.5e-15  Score=105.44  Aligned_cols=112  Identities=18%  Similarity=0.256  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------H
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNY-------T  198 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~  198 (243)
                      ..+..++.+|..+...|++++|+..|++++..+|.+.  .++.++|.++...|++++|+..+++++...|.+       +
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~   79 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM--TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA   79 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHH
Confidence            4577899999999999999999999999999999987  999999999999999999999999999998876       8


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          199 EAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       199 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      .+++.+|.++...|++++|+..|++++.+.| ++..+..++.
T Consensus        80 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~  120 (131)
T 1elr_A           80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQ  120 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHH
Confidence            8999999999999999999999999999999 4666555443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.66  E-value=7.6e-17  Score=111.17  Aligned_cols=99  Identities=13%  Similarity=0.083  Sum_probs=88.4

Q ss_pred             HhcCHHHHHHHHHHhhcc---CCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 026145          140 EKANFSEADGFLSQAIEL---KPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDA  216 (243)
Q Consensus       140 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  216 (243)
                      ..|++++|+..|+++++.   +|++.  .++.++|.++..+|++++|+..++++++++|+++.+++.+|.++..+|++++
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~   79 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLA--ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQ   79 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHH
Confidence            368999999999999999   58765  9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCCchhhhhhhhh
Q 026145          217 AEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       217 A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      |+..+++++..+|+++....+...
T Consensus        80 A~~~~~~al~~~p~~~~~~~~~~a  103 (117)
T 3k9i_A           80 GVELLLKIIAETSDDETIQSYKQA  103 (117)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHTHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHH
Confidence            999999999999999888765543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.66  E-value=7.6e-16  Score=127.16  Aligned_cols=114  Identities=19%  Similarity=0.272  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhc----------------cCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIE----------------LKPFGGIHVLYKDRCLARLTMGNFSAALEDVRE  189 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  189 (243)
                      ..+..+..+|..++..|+|++|+..|+++++                .+|.+.  .+|.++|.++..+|+|++|+.++++
T Consensus       221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~--~~~~nla~~~~~~g~~~~A~~~~~~  298 (370)
T 1ihg_A          221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVAL--SCVLNIGACKLKMSDWQGAVDSCLE  298 (370)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHH--HHHHHHHHHHHhccCHHHHHHHHHH
Confidence            5677899999999999999999999999998                666655  8999999999999999999999999


Q ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          190 ALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       190 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      +++++|+++.+++.+|.+|..+|++++|+..|+++++++|+++.++..++.+
T Consensus       299 al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~  350 (370)
T 1ihg_A          299 ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV  350 (370)
T ss_dssp             HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999888777654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.66  E-value=2.4e-15  Score=130.75  Aligned_cols=136  Identities=13%  Similarity=-0.016  Sum_probs=126.9

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |..+...|++++|.+.+++++...|       ....+++.+|.++...|++++|+..|+++++.+|++.  .++.++|.+
T Consensus        30 g~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~  100 (568)
T 2vsy_A           30 ADAELGMGDTTAGEMAVQRGLALHP-------GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHP--GIALWLGHA  100 (568)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHTTST-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHH
Confidence            4556677899999999999999998       7788999999999999999999999999999999987  999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHhccCCCchhhhhhh
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAM---DQYDAAEKSYSTCLQIDPSIRRSKSFK  238 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~  238 (243)
                      +..+|++++|++.++++++.+|+++.++.++|.++..+   |++++|.+.++++++.+|++...+..+
T Consensus       101 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  168 (568)
T 2vsy_A          101 LEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFL  168 (568)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHh
Confidence            99999999999999999999999999999999999999   999999999999999999876665443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.66  E-value=2.2e-15  Score=114.38  Aligned_cols=137  Identities=12%  Similarity=0.057  Sum_probs=124.0

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHhhc--cCCCCchHHHHHhH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEK-ANFSEADGFLSQAIE--LKPFGGIHVLYKDR  170 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~~~l  170 (243)
                      +..+...|++++|.+.+++++...|       .....+..+|.++... |++++|+..|++++.  ..|.+.  .++..+
T Consensus        49 ~~~~~~~~~~~~A~~~~~~a~~~~~-------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~l  119 (225)
T 2vq2_A           49 AEIYQYLKVNDKAQESFRQALSIKP-------DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPY--IANLNK  119 (225)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHH--HHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHhCC-------CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchH--HHHHHH
Confidence            4556678899999999999998877       6677899999999999 999999999999999  556544  899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-Cchhhhhhhh
Q 026145          171 CLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP-SIRRSKSFKV  239 (243)
Q Consensus       171 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~a  239 (243)
                      |.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++..+| +++..+....
T Consensus       120 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  189 (225)
T 2vq2_A          120 GICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGW  189 (225)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999 8887765443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.66  E-value=6.8e-16  Score=123.11  Aligned_cols=190  Identities=13%  Similarity=0.082  Sum_probs=136.4

Q ss_pred             CcEEEEccCCccCcc-CHHHHHHHHHhcCCCcEEEEeeCCCCC--------CCCCCeEEEecCCeEEE-ecC--CHhHHH
Q 026145           40 LKELRVCTNRTCRRQ-GSMQILETLSSLAPPEVAVKSCGCLGR--------CGAGPNLVALPDGVVVG-HCG--TPARAS  107 (243)
Q Consensus        40 ~~~i~vC~~~~c~~~-G~~~~~~~l~~~g~~~v~v~~~gc~g~--------c~~~p~~~~~~~g~~~~-~~~--~~~~a~  107 (243)
                      +..|+....+.|... --...++.+.+...+.+.+....|...        -..-|+++++.+|.... ..|  ..+...
T Consensus        27 ~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~~l~  106 (287)
T 3qou_A           27 TPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIR  106 (287)
T ss_dssp             SCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCHHHHHTTTCCSSSEEEEEETTEEEEEEESCCCHHHHH
T ss_pred             CeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCHHHHHHcCCCCCCeEEEEECCEEEEEeeCCCCHHHHH
Confidence            344555555555332 223344555442222355554444431        12358888888885432 222  455566


Q ss_pred             HHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHH-
Q 026145          108 EILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED-  186 (243)
Q Consensus       108 ~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~-  186 (243)
                      +.+...+   |       .....++.+|..+...|++++|+..|++++..+|++.  .+++++|.++...|++++|+.. 
T Consensus       107 ~~l~~~l---p-------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~la~~~~~~g~~~~A~~~l  174 (287)
T 3qou_A          107 ALLDXVL---P-------REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG--EIGLLLAETLIALNRSEDAEAVL  174 (287)
T ss_dssp             HHHHHHS---C-------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH--HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHc---C-------CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch--hHHHHHHHHHHHCCCHHHHHHHH
Confidence            6666554   4       5677888999999999999999999999999999987  8999999999999998877644 


Q ss_pred             ---------------------------------HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc--
Q 026145          187 ---------------------------------VREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI--  231 (243)
Q Consensus       187 ---------------------------------~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--  231 (243)
                                                       +++++..+|+++.+++.+|.++...|++++|+..|.++++.+|++  
T Consensus       175 ~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~  254 (287)
T 3qou_A          175 XTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAAD  254 (287)
T ss_dssp             TTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGG
T ss_pred             HhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc
Confidence                                             455577789999999999999999999999999999999999998  


Q ss_pred             hhhhhhhhhc
Q 026145          232 RRSKSFKVSS  241 (243)
Q Consensus       232 ~~~~~~~a~i  241 (243)
                      ..++..+..+
T Consensus       255 ~~a~~~l~~~  264 (287)
T 3qou_A          255 GQTRXTFQEI  264 (287)
T ss_dssp             GHHHHHHHHH
T ss_pred             chHHHHHHHH
Confidence            6666655543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.65  E-value=2e-15  Score=120.69  Aligned_cols=137  Identities=12%  Similarity=0.033  Sum_probs=103.4

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHH--HHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRA--EAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRC  171 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a--~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la  171 (243)
                      +..+...|++++|.+.+++++...|       .........+  ..+...|++++|+..|+++++..|+++  .+++++|
T Consensus       137 ~~~~~~~g~~~~A~~~l~~~~~~~p-------~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~--~~~~~la  207 (291)
T 3mkr_A          137 VQILLKLDRLDLARKELKKMQDQDE-------DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTL--LLLNGQA  207 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCH--HHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCc-------CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcH--HHHHHHH
Confidence            4456677788888888888876665       2221221122  223345788888888888888888876  8888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHHhccCCCchhhhhhhh
Q 026145          172 LARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDA-AEKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       172 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~~a  239 (243)
                      .++..+|++++|+..++++++.+|+++.++.++|.++...|++++ +..+++++++++|+++.+..+..
T Consensus       208 ~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~  276 (291)
T 3mkr_A          208 ACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRA  276 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            888888888888888888888888888888888888888888866 46788888888888887766544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.65  E-value=1.5e-15  Score=121.78  Aligned_cols=136  Identities=18%  Similarity=0.167  Sum_probs=126.1

Q ss_pred             EEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHH
Q 026145           97 VGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLT  176 (243)
Q Consensus        97 ~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~  176 (243)
                      +...|++++|.+.+++++...|       .....+..+|.++...|++++|+..+++++..+|++.  .++..+|.++..
T Consensus       148 ~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~  218 (327)
T 3cv0_A          148 FAAPNEYRECRTLLHAALEMNP-------NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDA--QLWNKLGATLAN  218 (327)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHST-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHH
Confidence            5566789999999999998887       6678999999999999999999999999999999987  999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC------------chhhhhhhhhc
Q 026145          177 MGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS------------IRRSKSFKVSS  241 (243)
Q Consensus       177 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~~a~i  241 (243)
                      .|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++.++|+            ++.++..++.+
T Consensus       219 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  295 (327)
T 3cv0_A          219 GNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML  295 (327)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999            67777666554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.65  E-value=3.3e-15  Score=114.77  Aligned_cols=143  Identities=15%  Similarity=0.063  Sum_probs=119.0

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCL  172 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~  172 (243)
                      |..+...|++++|+..|++++...|.    ......+++.+|.+++..|+|++|+..|+++++.+|++. ...+++.+|.
T Consensus        11 a~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~   86 (225)
T 2yhc_A           11 AQQKLQDGNWRQAITQLEALDNRYPF----GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGL   86 (225)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTT----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHH
Confidence            34455678999999999999976651    113467899999999999999999999999999999976 2247889999


Q ss_pred             HHHH------------------cCCHHHHHHHHHHHHHhCCCcHHHH-----------------HHHHHHHHHcCCHHHH
Q 026145          173 ARLT------------------MGNFSAALEDVREALELAPNYTEAY-----------------ICQGDVFLAMDQYDAA  217 (243)
Q Consensus       173 ~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~~A  217 (243)
                      ++..                  .|++++|+..|+++++.+|+++.++                 +.+|.+|...|++++|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A  166 (225)
T 2yhc_A           87 TNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAV  166 (225)
T ss_dssp             HHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence            9886                  5789999999999999999986554                 6789999999999999


Q ss_pred             HHHHHHHhccCCCch---hhhhhhhh
Q 026145          218 EKSYSTCLQIDPSIR---RSKSFKVS  240 (243)
Q Consensus       218 ~~~~~~al~~~p~~~---~~~~~~a~  240 (243)
                      +..|+++++.+|+++   .++..++.
T Consensus       167 ~~~~~~~l~~~p~~~~~~~a~~~l~~  192 (225)
T 2yhc_A          167 VNRVEGMLRDYPDTQATRDALPLMEN  192 (225)
T ss_dssp             HHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcCCCccHHHHHHHHH
Confidence            999999999999987   34544443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.64  E-value=7.3e-16  Score=113.88  Aligned_cols=138  Identities=13%  Similarity=0.032  Sum_probs=116.1

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      +..+...|++++|...+++++...|       .++.+++.+|.++...|++++|+..|++++..+| ++  ..+..++.+
T Consensus        13 a~~~~~~g~~~~A~~~~~~al~~~P-------~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~--~~~~~~~~~   82 (176)
T 2r5s_A           13 VSELLQQGEHAQALNVIQTLSDELQ-------SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN--SYKSLIAKL   82 (176)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSCHHHH-------TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH--HHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCC-------CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch--HHHHHHHHH
Confidence            3345567899999999999988877       7789999999999999999999999999999999 75  555555544


Q ss_pred             HH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc--hhhhhhhhhc
Q 026145          174 RL-TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI--RRSKSFKVSS  241 (243)
Q Consensus       174 ~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~a~i  241 (243)
                      .. ..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+.  +.++..++.+
T Consensus        83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~  153 (176)
T 2r5s_A           83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDI  153 (176)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHH
T ss_pred             HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHH
Confidence            32 33344568999999999999999999999999999999999999999999999986  4466665543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.64  E-value=4.6e-16  Score=126.96  Aligned_cols=116  Identities=12%  Similarity=0.081  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCch---------------HHHHHhHHHHHHHcCCHHHHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGI---------------HVLYKDRCLARLTMGNFSAALEDVREA  190 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a  190 (243)
                      ..+..++.+|..++..|+|++|+..|.+++...|++..               ..+|+++|.++..+|+|++|+..++++
T Consensus       177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a  256 (338)
T 2if4_A          177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV  256 (338)
T ss_dssp             HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            67788999999999999999999999999999998530               038999999999999999999999999


Q ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          191 LELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       191 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ++++|++..+++++|.+|..+|++++|+..|+++++++|+++.++..++.+
T Consensus       257 l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l  307 (338)
T 2if4_A          257 LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL  307 (338)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998877765

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.64  E-value=2.6e-16  Score=113.62  Aligned_cols=97  Identities=7%  Similarity=-0.060  Sum_probs=89.7

Q ss_pred             CHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026145          143 NFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYS  222 (243)
Q Consensus       143 ~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  222 (243)
                      ++-.+-..+++++.++|++.  .+++++|.+++..|++++|+..|++++.++|+++.+|+++|.++..+|++++|+..|+
T Consensus        17 ~~~~~~~~l~~al~l~p~~~--~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~   94 (151)
T 3gyz_A           17 DAINSGATLKDINAIPDDMM--DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYA   94 (151)
T ss_dssp             HHHHTSCCTGGGCCSCHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHCCCCHHHHhCCCHHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            33344466889999999977  9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccCCCchhhhhhhhhc
Q 026145          223 TCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       223 ~al~~~p~~~~~~~~~a~i  241 (243)
                      ++++++|+++.++..++.+
T Consensus        95 ~al~l~P~~~~~~~~lg~~  113 (151)
T 3gyz_A           95 VAFALGKNDYTPVFHTGQC  113 (151)
T ss_dssp             HHHHHSSSCCHHHHHHHHH
T ss_pred             HHHhhCCCCcHHHHHHHHH
Confidence            9999999999999888765

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.64  E-value=3.7e-15  Score=116.82  Aligned_cols=143  Identities=13%  Similarity=0.123  Sum_probs=125.3

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      .+..+...|++++|++.+++++...+    +....+.++..+|.++...|++++|+..|+++++.+|.+.  .++..+|.
T Consensus        43 l~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l~~  116 (272)
T 3u4t_A           43 RAVCYYELAKYDLAQKDIETYFSKVN----ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL--DMYGQIGS  116 (272)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTSC----TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT--HHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhccC----chhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH--HHHHHHHH
Confidence            34566788899999999999997331    1123466789999999999999999999999999999987  99999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ++..+|++++|+..++++++.+|.++.+++.+|...+..+++++|+..++++++++|++..++..++.+
T Consensus       117 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~  185 (272)
T 3u4t_A          117 YFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARA  185 (272)
T ss_dssp             HHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            999999999999999999999999999999999555555699999999999999999998888776654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.63  E-value=4.3e-15  Score=120.45  Aligned_cols=136  Identities=18%  Similarity=0.051  Sum_probs=103.9

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHH
Q 026145           96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL  175 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~  175 (243)
                      .+...|++++|...+++++...|       ..+..++.+|.++...|++++|+..|++++..+|++.  .++..+|.++.
T Consensus        12 ~~~~~g~~~~A~~~~~~~l~~~p-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~   82 (359)
T 3ieg_A           12 KLLAAGQLADALSQFHAAVDGDP-------DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT--AARLQRGHLLL   82 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCc-------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc--hHHHHHHHHHH
Confidence            34556788888888888887776       5677888888888888888888888888888888866  78888888888


Q ss_pred             HcCCHHHHHHHHHHHHHhCC---CcHHHHHHH------------HHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          176 TMGNFSAALEDVREALELAP---NYTEAYICQ------------GDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       176 ~~~~~~~A~~~~~~al~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      ..|++++|+..++++++.+|   +++.++..+            |.++...|++++|+..+.+++..+|+++.++..++.
T Consensus        83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  162 (359)
T 3ieg_A           83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE  162 (359)
T ss_dssp             HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            88888888888888888777   666666655            566777777777777777777777776666655544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.63  E-value=1.1e-15  Score=121.61  Aligned_cols=104  Identities=29%  Similarity=0.400  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 026145          127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGD  206 (243)
Q Consensus       127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  206 (243)
                      .+..++.+|..++..|+|++|+..|++++..+|++.  .++.++|.++..+|++++|+..++++++++|+++.+++.+|.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA--VYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            467889999999999999999999999999999987  999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHhccCCCch
Q 026145          207 VFLAMDQYDAAEKSYSTCLQIDPSIR  232 (243)
Q Consensus       207 ~~~~~g~~~~A~~~~~~al~~~p~~~  232 (243)
                      +|..+|++++|+..|+++++++|+++
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~  106 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQR  106 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccch
Confidence            99999999999999999999999774

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.63  E-value=1.1e-14  Score=118.93  Aligned_cols=140  Identities=16%  Similarity=0.096  Sum_probs=112.4

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      .|..+...|++++|...+++++...|       ..+.+++.+|.++...|++++|+..|++++..+|++.  .++..+|.
T Consensus        70 ~~~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~l~~  140 (368)
T 1fch_A           70 EGLRRLQEGDLPNAVLLFEAAVQQDP-------KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ--TALMALAV  140 (368)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCH--HHHHHHHH
Confidence            45667788899999999999998887       6778889999999999999999999999999999876  78888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCC-------------------------------------------------C--cHHHH
Q 026145          173 ARLTMGNFSAALEDVREALELAP-------------------------------------------------N--YTEAY  201 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p-------------------------------------------------~--~~~~~  201 (243)
                      ++...|++++|+..+++++..+|                                                 .  ++.++
T Consensus       141 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  220 (368)
T 1fch_A          141 SFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ  220 (368)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence            88888777777776666655444                                                 3  46677


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          202 ICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       202 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ..+|.++...|++++|+..+++++.++|+++.++..++.+
T Consensus       221 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~  260 (368)
T 1fch_A          221 CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGAT  260 (368)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            7788888888888888888888888888877777666544

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.63  E-value=6.1e-15  Score=128.18  Aligned_cols=141  Identities=17%  Similarity=0.154  Sum_probs=120.5

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc------CCCCchHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIEL------KPFGGIHVLY  167 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~  167 (243)
                      +..|...|++++|.+.|++++...|       .++..+..+|..+...|++++|+..|+++++.      +|++ ...+|
T Consensus       448 ~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~-~~~~~  519 (597)
T 2xpi_A          448 GMQHMQLGNILLANEYLQSSYALFQ-------YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP-WAATW  519 (597)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG-GHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-------CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh-HHHHH
Confidence            3445667788888888888777666       55677889999999999999999999999888      4543 13789


Q ss_pred             HhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhcc
Q 026145          168 KDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSST  242 (243)
Q Consensus       168 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i~  242 (243)
                      ..+|.++...|++++|+..++++++.+|+++.++..+|.+|...|++++|.+.|+++++++|+++.++..++++.
T Consensus       520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  594 (597)
T 2xpi_A          520 ANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL  594 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999998887764

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.63  E-value=6e-15  Score=119.59  Aligned_cols=140  Identities=13%  Similarity=0.074  Sum_probs=123.1

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCC---CCchHHHHHh
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKP---FGGIHVLYKD  169 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~~  169 (243)
                      .|..+...|++++|...+++++...|       ....++..+|.++...|++++|+..|++++..+|   ++.  .++..
T Consensus        43 ~a~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~  113 (359)
T 3ieg_A           43 RATVFLAMGKSKAALPDLTKVIALKM-------DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEK--EAESQ  113 (359)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHH--HHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCC-------CcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChH--HHHHH
Confidence            35566778899999999999998887       6678899999999999999999999999999999   765  66666


Q ss_pred             H------------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhh
Q 026145          170 R------------CLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSF  237 (243)
Q Consensus       170 l------------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  237 (243)
                      +            |.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++..+|+++.++..
T Consensus       114 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  193 (359)
T 3ieg_A          114 LVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYK  193 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            6            7888999999999999999999999999999999999999999999999999999999999888877


Q ss_pred             hhhc
Q 026145          238 KVSS  241 (243)
Q Consensus       238 ~a~i  241 (243)
                      ++.+
T Consensus       194 la~~  197 (359)
T 3ieg_A          194 ISTL  197 (359)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.63  E-value=1.4e-14  Score=113.59  Aligned_cols=133  Identities=18%  Similarity=0.137  Sum_probs=117.9

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      .|..+...|++++|.+.+++++...|       ..+..+..+|.++...|++++|+..|++++..+|.+.  .++..+|.
T Consensus        49 l~~~~~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~  119 (275)
T 1xnf_A           49 RGVLYDSLGLRALARNDFSQALAIRP-------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--YAHLNRGI  119 (275)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT--HHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc--HHHHHHHH
Confidence            35666778899999999999998887       6788999999999999999999999999999999987  99999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcH------------------------------------------------------
Q 026145          173 ARLTMGNFSAALEDVREALELAPNYT------------------------------------------------------  198 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p~~~------------------------------------------------------  198 (243)
                      ++..+|++++|+..++++++.+|++.                                                      
T Consensus       120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  199 (275)
T 1xnf_A          120 ALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMER  199 (275)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHH
Confidence            99999999999999999999988764                                                      


Q ss_pred             ----------------HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhh
Q 026145          199 ----------------EAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRS  234 (243)
Q Consensus       199 ----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  234 (243)
                                      .+++.+|.++...|++++|+..|++++.++|++...
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  251 (275)
T 1xnf_A          200 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE  251 (275)
T ss_dssp             HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred             HHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence                            556778888888888888888888888888866543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.62  E-value=1.9e-15  Score=120.74  Aligned_cols=135  Identities=11%  Similarity=-0.036  Sum_probs=114.3

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHH-
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRC-  171 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la-  171 (243)
                      .|..+...|++++|++.+++     |       ....++..+|.++...|++++|+..|+++++.+|++.  ......+ 
T Consensus       107 la~~~~~~g~~~~Al~~l~~-----~-------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~--~~~l~~a~  172 (291)
T 3mkr_A          107 AASIYFYDQNPDAALRTLHQ-----G-------DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT--LTQLATAW  172 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHHTT-----C-------CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHhC-----C-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH--HHHHHHHH
Confidence            45666778899999888876     3       4567889999999999999999999999999999864  2222222 


Q ss_pred             -HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          172 -LARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       172 -~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                       ..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|++++.++|+++.++..++.+
T Consensus       173 ~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~  243 (291)
T 3mkr_A          173 VSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVL  243 (291)
T ss_dssp             HHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence             3333458999999999999999999999999999999999999999999999999999999998777643

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.62  E-value=3.6e-16  Score=133.28  Aligned_cols=134  Identities=17%  Similarity=0.172  Sum_probs=118.3

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      .|..+...|++++|++.+++++...|       ..+.+++.+|.++...|++++|+..|+++++++|++.  .+++++|.
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~~p-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~lg~   82 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIELNP-------SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI--KGYYRRAA   82 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH--HHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCC-------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH--HHHHHHHH
Confidence            45566778899999999999999888       7789999999999999999999999999999999987  99999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHhccCCCchhhh
Q 026145          173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDV--FLAMDQYDAAEKSYS-----------TCLQIDPSIRRSK  235 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~~~~~  235 (243)
                      ++..+|++++|+..++++++++|++..++..++.+  +...|++++|++.+.           +++.++|+....+
T Consensus        83 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~  158 (477)
T 1wao_1           83 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPK  158 (477)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCC
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccc
Confidence            99999999999999999999999999999999988  889999999999999           8888888765544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.62  E-value=7.9e-16  Score=122.93  Aligned_cols=141  Identities=14%  Similarity=0.023  Sum_probs=113.6

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHhhccCCCCc----hHHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEK-ANFSEADGFLSQAIELKPFGG----IHVLY  167 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~~----~~~~~  167 (243)
                      .|..|...|++++|+..+++++...+ ........+..+..+|.++... |++++|+.+|++++.+.|.+.    ...++
T Consensus        83 lg~~~~~~g~~~~A~~~~~~Al~l~~-~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~  161 (292)
T 1qqe_A           83 AYKCFKSGGNSVNAVDSLENAIQIFT-HRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCF  161 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Confidence            35667788899999999999886553 1122223467899999999996 999999999999999987541    13678


Q ss_pred             HhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-------HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhh
Q 026145          168 KDRCLARLTMGNFSAALEDVREALELAPNYTE-------AYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRS  234 (243)
Q Consensus       168 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  234 (243)
                      .++|.++..+|+|++|+..|++++++.|++..       +++++|.++..+|++++|+..|++++.++|+....
T Consensus       162 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  235 (292)
T 1qqe_A          162 IKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (292)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence            99999999999999999999999999987643       68999999999999999999999999999987654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.62  E-value=1.2e-14  Score=122.09  Aligned_cols=140  Identities=12%  Similarity=0.107  Sum_probs=123.5

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHH------------HHHHHHHHHhcCHHHHHHHHHHhhccCCCC
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALAL------------RKRAEAEFEKANFSEADGFLSQAIELKPFG  161 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~------------~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  161 (243)
                      +..|...|++++|.+.+++++...|       .....+            ..+|..+...|++++|+..|++++...|++
T Consensus       218 ~~~~~~~g~~~~A~~~~~~~~~~~p-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~  290 (450)
T 2y4t_A          218 STLYYQLGDHELSLSEVRECLKLDQ-------DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSI  290 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-------ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Confidence            4566778899999999999988776       333333            344999999999999999999999999987


Q ss_pred             ch--HHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145          162 GI--HVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       162 ~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  239 (243)
                      +.  ..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++++|+++.++..++
T Consensus       291 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  370 (450)
T 2y4t_A          291 AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE  370 (450)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            41  2578999999999999999999999999999999999999999999999999999999999999999999887776


Q ss_pred             h
Q 026145          240 S  240 (243)
Q Consensus       240 ~  240 (243)
                      .
T Consensus       371 ~  371 (450)
T 2y4t_A          371 K  371 (450)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.62  E-value=1.8e-15  Score=123.34  Aligned_cols=131  Identities=20%  Similarity=0.116  Sum_probs=113.7

Q ss_pred             eEEEecCCHhHHHHHHHHHhcCCCCCc--------chhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHH
Q 026145           95 VVVGHCGTPARASEILMVLCGIKSDHD--------AAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVL  166 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~--------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  166 (243)
                      ..+...|++++|+..|++++...|...        ......+.+++++|.++...|+|++|+..|+++++++|++.  .+
T Consensus       155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~--~a  232 (336)
T 1p5q_A          155 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE--KG  232 (336)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HH
Confidence            345567799999999999998876221        01122368999999999999999999999999999999987  99


Q ss_pred             HHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHhcc
Q 026145          167 YKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAA-EKSYSTCLQI  227 (243)
Q Consensus       167 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~  227 (243)
                      ++++|.++..+|++++|+..|+++++++|++..++..++.++..+|++++| ...|++++..
T Consensus       233 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          233 LSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999 4567776654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.62  E-value=1.1e-14  Score=105.55  Aligned_cols=126  Identities=17%  Similarity=0.134  Sum_probs=113.0

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |..+...|++++|...+++++...|       .....++.+|.++...|++++|+..|.+++..+|.+.  .+++++|.+
T Consensus        20 a~~~~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~a~~   90 (166)
T 1a17_A           20 ANDYFKAKDYENAIKFYSQAIELNP-------SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI--KGYYRRAAS   90 (166)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHST-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCC-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--HHHHHHHHH
Confidence            3445667899999999999998887       6688999999999999999999999999999999987  999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH--HHHHHcCCHHHHHHHHHHHhccC
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYICQG--DVFLAMDQYDAAEKSYSTCLQID  228 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~  228 (243)
                      +..+|++++|+..++++++.+|.+..++..++  ..+...|++++|+..+.++..+.
T Consensus        91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  147 (166)
T 1a17_A           91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV  147 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence            99999999999999999999999998885554  44889999999999999887653

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.60  E-value=2.6e-14  Score=99.29  Aligned_cols=111  Identities=24%  Similarity=0.371  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 026145          129 LALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVF  208 (243)
Q Consensus       129 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  208 (243)
                      .+++.+|..+...|++++|+..|++++...|.+.  .++..+|.++...|++++|+..+++++...|.++.+++.+|.++
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   79 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA--EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY   79 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch--hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence            4678899999999999999999999999999976  89999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          209 LAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       209 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ...|++++|+..+.+++...|+++.++..++.+
T Consensus        80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  112 (136)
T 2fo7_A           80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA  112 (136)
T ss_dssp             HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            999999999999999999999998887766554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.59  E-value=1.2e-15  Score=129.99  Aligned_cols=114  Identities=29%  Similarity=0.444  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG  205 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  205 (243)
                      ..+..++.+|..+...|+|++|++.|+++++.+|++.  .++.++|.++..+|++++|+..++++++++|+++.+++++|
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   81 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA--IYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA   81 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4566778889999999999999999999999999987  99999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          206 DVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      .+|..+|++++|++.|+++++++|+++.++..++.+
T Consensus        82 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~  117 (477)
T 1wao_1           82 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  117 (477)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999999999999999999888776543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.59  E-value=2.4e-14  Score=120.19  Aligned_cols=139  Identities=18%  Similarity=0.078  Sum_probs=118.6

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |..+...|++++|...|++++...|       ..+..++.+|.++...|++++|+..|+++++.+|++.  .++..+|.+
T Consensus        33 ~~~~~~~g~~~~A~~~~~~~l~~~p-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~  103 (450)
T 2y4t_A           33 GKKLLAAGQLADALSQFHAAVDGDP-------DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFT--AARLQRGHL  103 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCC-------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH--HHHHHHHHH
Confidence            4456677899999999999988777       6688899999999999999999999999999999976  889999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhh
Q 026145          174 RLTMGNFSAALEDVREALELAPNYT---EAYICQ------------GDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFK  238 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  238 (243)
                      +..+|++++|+..|+++++.+|++.   .++..+            |.++...|++++|+..|++++..+|+++.++..+
T Consensus       104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  183 (450)
T 2y4t_A          104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELR  183 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            9999999999999999999999887   665554            6668888999999999999988888888877766


Q ss_pred             hhc
Q 026145          239 VSS  241 (243)
Q Consensus       239 a~i  241 (243)
                      +.+
T Consensus       184 ~~~  186 (450)
T 2y4t_A          184 AEC  186 (450)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.59  E-value=4.4e-14  Score=112.55  Aligned_cols=71  Identities=18%  Similarity=0.247  Sum_probs=65.0

Q ss_pred             CCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145          159 PFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI  231 (243)
Q Consensus       159 p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  231 (243)
                      |.+.  ..+..+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+.
T Consensus       114 p~~~--~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~  184 (287)
T 3qou_A          114 PREE--ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT  184 (287)
T ss_dssp             CCHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH
T ss_pred             CCch--hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch
Confidence            7765  8899999999999999999999999999999999999999999999999999988888877766643

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.59  E-value=1.3e-14  Score=124.46  Aligned_cols=138  Identities=17%  Similarity=0.163  Sum_probs=124.6

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |..+...|++++|.+.+++++...|       . ...+..+|.++...|++++|+..|++++..+|+++  .++..+|.+
T Consensus       250 g~~~~~~~~~~~A~~~~~~~~~~~~-------~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~  319 (537)
T 3fp2_A          250 GIFHFLKNNLLDAQVLLQESINLHP-------T-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYP--PTYYHRGQM  319 (537)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCC-------C-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred             HHHHHhcccHHHHHHHHHHHHhcCC-------C-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCH--HHHHHHHHH
Confidence            4556677899999999999998887       5 67888999999999999999999999999999977  899999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      +...|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++..+|+++.++..++.+
T Consensus       320 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  387 (537)
T 3fp2_A          320 YFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEI  387 (537)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998888777654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.57  E-value=4e-14  Score=107.10  Aligned_cols=102  Identities=17%  Similarity=0.199  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG  205 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  205 (243)
                      ..+..++.+|..+...|++++|+..|++++  +| ++  .+++++|.++...|++++|+..+++++..+|+++.+++++|
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg   78 (213)
T 1hh8_A            4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HS--RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRG   78 (213)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-Ch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            456678899999999999999999999996  34 44  89999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCch
Q 026145          206 DVFLAMDQYDAAEKSYSTCLQIDPSIR  232 (243)
Q Consensus       206 ~~~~~~g~~~~A~~~~~~al~~~p~~~  232 (243)
                      .++..+|++++|+..|++++++.|++.
T Consensus        79 ~~~~~~~~~~~A~~~~~~al~~~~~~~  105 (213)
T 1hh8_A           79 MLYYQTEKYDLAIKDLKEALIQLRGNQ  105 (213)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred             HHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence            999999999999999999999988876

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.57  E-value=7e-15  Score=126.03  Aligned_cols=135  Identities=12%  Similarity=0.117  Sum_probs=125.6

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      .|..+...|++++|.+.+++++...|       ..+..+..+|.++...|++++|+..|++++..+|++.  .++..+|.
T Consensus       282 l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la~  352 (537)
T 3fp2_A          282 LALTLADKENSQEFFKFFQKAVDLNP-------EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV--YPYIQLAC  352 (537)
T ss_dssp             HHHHTCCSSCCHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS--HHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHhccCC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHH
Confidence            35556778899999999999998887       6788899999999999999999999999999999987  99999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhh
Q 026145          173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKS  236 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  236 (243)
                      ++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++.++|+++..+.
T Consensus       353 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  416 (537)
T 3fp2_A          353 LLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV  416 (537)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence            9999999999999999999999999999999999999999999999999999999988776543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.57  E-value=3.5e-14  Score=98.69  Aligned_cols=109  Identities=18%  Similarity=0.052  Sum_probs=99.8

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |..+...|++++|++.|++++...|       ..+..++.+|.++...|++++|+..|++++.++|++.  .+++++|.+
T Consensus        11 g~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~   81 (126)
T 3upv_A           11 GKEYFTKSDWPNAVKAYTEMIKRAP-------EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV--RAYIRKATA   81 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCC-------CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH--HHHHHHHHH
Confidence            3345567899999999999999888       7789999999999999999999999999999999987  999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHc
Q 026145          174 RLTMGNFSAALEDVREALELA------PNYTEAYICQGDVFLAM  211 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~  211 (243)
                      +..+|++++|+..++++++++      |++..++..++.+...+
T Consensus        82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            999999999999999999999      99999999888876553

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.57  E-value=1.2e-14  Score=111.58  Aligned_cols=135  Identities=12%  Similarity=-0.008  Sum_probs=116.0

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHH------------------hcCHHHHHHHHHHh
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFE------------------KANFSEADGFLSQA  154 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~------------------~~~~~~A~~~~~~a  154 (243)
                      .|..|...|++++|++.|++++...|+.    .....+++.+|.++..                  .|++++|+..|+++
T Consensus        47 lg~~~~~~~~~~~A~~~~~~~l~~~P~~----~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  122 (225)
T 2yhc_A           47 LIYAYYKNADLPLAQAAIDRFIRLNPTH----PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKL  122 (225)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTC----TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHCcCC----CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHH
Confidence            3566778889999999999999877621    1234578888888876                  57999999999999


Q ss_pred             hccCCCCchHHHH-----------------HhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCH
Q 026145          155 IELKPFGGIHVLY-----------------KDRCLARLTMGNFSAALEDVREALELAPNYT---EAYICQGDVFLAMDQY  214 (243)
Q Consensus       155 l~~~p~~~~~~~~-----------------~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~  214 (243)
                      ++.+|++.  .++                 ..+|.++...|++++|+..|+++++..|+++   .+++.+|.++..+|++
T Consensus       123 l~~~P~~~--~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~  200 (225)
T 2yhc_A          123 VRGYPNSQ--YTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMN  200 (225)
T ss_dssp             HTTCTTCT--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHCcCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc
Confidence            99999986  333                 5789999999999999999999999999876   6899999999999999


Q ss_pred             HHHHHHHHHHhccCCCchh
Q 026145          215 DAAEKSYSTCLQIDPSIRR  233 (243)
Q Consensus       215 ~~A~~~~~~al~~~p~~~~  233 (243)
                      ++|++.++++....|++.+
T Consensus       201 ~~A~~~~~~l~~~~~~~~~  219 (225)
T 2yhc_A          201 AQAEKVAKIIAANSSNTLE  219 (225)
T ss_dssp             HHHHHHHHHHHHCCSCCCC
T ss_pred             HHHHHHHHHHHhhCCCchh
Confidence            9999999999999988654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.57  E-value=1.5e-14  Score=115.54  Aligned_cols=138  Identities=14%  Similarity=0.023  Sum_probs=115.9

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHhHH
Q 026145           96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKDRC  171 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~la  171 (243)
                      .|...|++++|.+.+.+++...+ ...+....+.++.++|.++...|++++|+..|++++.+.|...    ...++.++|
T Consensus        46 ~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg  124 (292)
T 1qqe_A           46 IYRLRKELNLAGDSFLKAADYQK-KAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG  124 (292)
T ss_dssp             HHHHTTCTHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44567899999999998876532 1112234578999999999999999999999999999987542    136899999


Q ss_pred             HHHHHc-CCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhh
Q 026145          172 LARLTM-GNFSAALEDVREALELAPNY------TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRS  234 (243)
Q Consensus       172 ~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  234 (243)
                      .+|... |++++|+..|++++++.|..      ..++.++|.++..+|++++|+..|++++.+.|++...
T Consensus       125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  194 (292)
T 1qqe_A          125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS  194 (292)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence            999996 99999999999999998754      5679999999999999999999999999999987653

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.56  E-value=5.8e-14  Score=121.99  Aligned_cols=124  Identities=13%  Similarity=0.002  Sum_probs=73.1

Q ss_pred             eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHH
Q 026145           95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLAR  174 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~  174 (243)
                      ..|...|++++|.+.|++++...|       .....|..+|..+.+.|++++|++.|++++...|++.  .++..++.++
T Consensus       381 ~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~  451 (597)
T 2xpi_A          381 IYYLCVNKISEARRYFSKSSTMDP-------QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH--LPYLFLGMQH  451 (597)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS--HHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch--HHHHHHHHHH
Confidence            344555666666666666655554       4445556666666666666666666666666666554  5555555555


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145          175 LTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQI  227 (243)
Q Consensus       175 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  227 (243)
                      ...|++++|++.|+++++.+|.++.++..+|.++...|++++|++.|++++++
T Consensus       452 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  504 (597)
T 2xpi_A          452 MQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL  504 (597)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            55566666666665555555555555555555555555555555555555555

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.56  E-value=2.9e-14  Score=121.32  Aligned_cols=138  Identities=14%  Similarity=0.031  Sum_probs=110.2

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCch----HHHHHh
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGI----HVLYKD  169 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~  169 (243)
                      +..+...|++++|.+.+++++...|       .....+..+|.++...|++++|+..|++++...|++..    ..++..
T Consensus       345 ~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  417 (514)
T 2gw1_A          345 ACLAYRENKFDDCETLFSEAKRKFP-------EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVG  417 (514)
T ss_dssp             HHHTTTTTCHHHHHHHHHHHHHHST-------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHcc-------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHH
Confidence            3445566778888888887776665       45567788888888888888888888888888877640    128888


Q ss_pred             HHHHHHH---cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhh
Q 026145          170 RCLARLT---MGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFK  238 (243)
Q Consensus       170 la~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  238 (243)
                      +|.++..   .|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++.++|+++.++..+
T Consensus       418 l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  489 (514)
T 2gw1_A          418 KATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI  489 (514)
T ss_dssp             HHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred             HHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence            8888888   88888888888888888888888888888888888888888888888888888888776544

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.56  E-value=8e-14  Score=112.00  Aligned_cols=129  Identities=11%  Similarity=0.042  Sum_probs=108.6

Q ss_pred             HhHHHHHHHHHhc-CCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHH-HHHhHHHHHHHcCCH
Q 026145          103 PARASEILMVLCG-IKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHV-LYKDRCLARLTMGNF  180 (243)
Q Consensus       103 ~~~a~~~l~~~l~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-~~~~la~~~~~~~~~  180 (243)
                      +++|...|++++. ..|       .....|..+|..+...|++++|...|++++++.|.+.  . +|.++|.++...|++
T Consensus        80 ~~~A~~~~~rAl~~~~p-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~  150 (308)
T 2ond_A           80 SDEAANIYERAISTLLK-------KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP--TLVYIQYMKFARRAEGI  150 (308)
T ss_dssp             HHHHHHHHHHHHTTTTT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT--HHHHHHHHHHHHHHHCH
T ss_pred             hHHHHHHHHHHHHHhCc-------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCc--cHHHHHHHHHHHHhcCH
Confidence            4899999999998 577       6778899999999999999999999999999999876  6 899999999888899


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          181 SAALEDVREALELAPNYTEAYICQGDVFLA-MDQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       181 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      ++|...|+++++..|.+..++...+..... .|++++|...|+++++.+|+++.++..++.
T Consensus       151 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~  211 (308)
T 2ond_A          151 KSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYID  211 (308)
T ss_dssp             HHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            998888888888888877777766655433 688888888888888888888877766553

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.55  E-value=5.5e-14  Score=97.89  Aligned_cols=111  Identities=19%  Similarity=0.100  Sum_probs=103.2

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |..+...|++++|.+.+++++...|       .....++.+|.++...|++++|+..|++++..+|.+.  .++.++|.+
T Consensus        23 ~~~~~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la~~   93 (133)
T 2lni_A           23 GNECFQKGDYPQAMKHYTEAIKRNP-------KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI--KGYTRKAAA   93 (133)
T ss_dssp             HHHHHHTTCSHHHHHHHHHHHTTCT-------TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch--HHHHHHHHH
Confidence            4556678899999999999998887       6688999999999999999999999999999999977  999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQ  213 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  213 (243)
                      +..+|++++|+..++++++.+|.+..++..++.++..+|+
T Consensus        94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999988774

>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*

Probab=99.55  E-value=3.4e-15  Score=109.54  Aligned_cols=99  Identities=24%  Similarity=0.353  Sum_probs=81.6

Q ss_pred             cccccccccccceeecCCCCcccccccccccccCCCcEEEEccCCccCccCHHHHHHHHHh-cCC--------CcEEEEe
Q 026145            5 FGLAFNSVLPVARLRLPSNDKSFCFPLPRARINAELKELRVCTNRTCRRQGSMQILETLSS-LAP--------PEVAVKS   75 (243)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vC~~~~c~~~G~~~~~~~l~~-~g~--------~~v~v~~   75 (243)
                      +||+...|++|.++      +     .+.++.+.++++|.||++++|..+|+.++++++++ ++.        +.+++..
T Consensus        53 l~l~~~~V~~VatF------Y-----~~f~~~P~gk~~I~VC~gt~C~~~Ga~~i~~~l~~~L~i~~gett~Dg~~tl~~  121 (181)
T 3i9v_2           53 VGTTPTEVMGVASF------Y-----SYYQFVPTGKYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQK  121 (181)
T ss_dssp             HTSCHHHHHHHHTT------C-----SSCCSSCCCSEEEEEECSHHHHTTTHHHHHHHHHHHHTCCTTCCCTTSCEEEEE
T ss_pred             hCcCHHHHHHHHhH------H-----hhcCCCCCCCEEEEECCCchhhhcCHHHHHHHHHHHhCcCCCCcCCCCcEEEEE
Confidence            57778888888655      3     33444455889999999999999999999999998 332        2599999


Q ss_pred             eCCCCCCCCCCeEEEecCCe-EEEecCCHhHHHHHHHHHhcCC
Q 026145           76 CGCLGRCGAGPNLVALPDGV-VVGHCGTPARASEILMVLCGIK  117 (243)
Q Consensus        76 ~gc~g~c~~~p~~~~~~~g~-~~~~~~~~~~a~~~l~~~l~~~  117 (243)
                      ++|+|.|+.+|++.+  ++. +|.++ +++++.++++...+..
T Consensus       122 ~~ClG~C~~gPvv~V--~~~~~y~~v-t~e~v~~Il~~l~~g~  161 (181)
T 3i9v_2          122 VECLGSCHTAPVIQV--NDEPYVECV-TRARLEALLAGLRAGK  161 (181)
T ss_dssp             ESCCSCGGGCSCEEC--SSSCCBCCC-CHHHHHHHHHHHHTTC
T ss_pred             cCCCCccCCCCEEEE--CCEEEEcCC-CHHHHHHHHHHHHcCC
Confidence            999999999999987  677 89999 9999999999865443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.55  E-value=2e-14  Score=115.22  Aligned_cols=139  Identities=17%  Similarity=0.141  Sum_probs=116.4

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHH--------------HH-HHHHhcCHHHHHHHHHHhhccC
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKR--------------AE-AEFEKANFSEADGFLSQAIELK  158 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~--------------a~-~~~~~~~~~~A~~~~~~al~~~  158 (243)
                      +..+...|++++|.+.+++++...|       .....+..+              +. ++...|++++|+..+++++...
T Consensus        96 a~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  168 (327)
T 3cv0_A           96 AVSHTNEHNANAALASLRAWLLSQP-------QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN  168 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTST-------TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-------ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC
Confidence            4445666777888888877776665       222223222              44 5788999999999999999999


Q ss_pred             CCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhh
Q 026145          159 PFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFK  238 (243)
Q Consensus       159 p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  238 (243)
                      |.+.  .++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+
T Consensus       169 ~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  246 (327)
T 3cv0_A          169 PNDA--QLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNM  246 (327)
T ss_dssp             TTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCH--HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            9977  99999999999999999999999999999999999999999999999999999999999999999999988777


Q ss_pred             hhc
Q 026145          239 VSS  241 (243)
Q Consensus       239 a~i  241 (243)
                      +.+
T Consensus       247 ~~~  249 (327)
T 3cv0_A          247 AVS  249 (327)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.55  E-value=5.8e-14  Score=97.21  Aligned_cols=111  Identities=18%  Similarity=0.071  Sum_probs=102.9

Q ss_pred             eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHH
Q 026145           95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLAR  174 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~  174 (243)
                      ..+...|++++|.+.+++++...|       ..+..+..+|.++...|++++|+..+.+++..+|++.  .++..+|.++
T Consensus        20 ~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~   90 (131)
T 2vyi_A           20 NEQMKVENFEAAVHFYGKAIELNP-------ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS--KAYGRMGLAL   90 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH--HHHHHHHHHH
Confidence            344567899999999999998877       5678899999999999999999999999999999987  9999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 026145          175 LTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQY  214 (243)
Q Consensus       175 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  214 (243)
                      ..+|++++|+..++++++.+|+++.++..++.++..+|++
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999998875

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.55  E-value=2e-14  Score=98.84  Aligned_cols=94  Identities=11%  Similarity=0.033  Sum_probs=84.8

Q ss_pred             cCCHhHHHHHHHHHhcCC---CCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHH
Q 026145          100 CGTPARASEILMVLCGIK---SDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLT  176 (243)
Q Consensus       100 ~~~~~~a~~~l~~~l~~~---~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~  176 (243)
                      .|++++|+..|++++...   |       ..+.+++.+|.++...|++++|+..|+++++.+|+++  .+++++|.++..
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p-------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~   73 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGK-------DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ--ALRVFYAMVLYN   73 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCc-------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch--HHHHHHHHHHHH
Confidence            468999999999999883   5       8889999999999999999999999999999999987  999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHH
Q 026145          177 MGNFSAALEDVREALELAPNYTEAYI  202 (243)
Q Consensus       177 ~~~~~~A~~~~~~al~~~p~~~~~~~  202 (243)
                      +|++++|+..+++++...|+++....
T Consensus        74 ~g~~~~A~~~~~~al~~~p~~~~~~~   99 (117)
T 3k9i_A           74 LGRYEQGVELLLKIIAETSDDETIQS   99 (117)
T ss_dssp             HTCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            99999999999999999999987654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.54  E-value=8.6e-15  Score=106.49  Aligned_cols=120  Identities=13%  Similarity=-0.006  Sum_probs=100.6

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcC--------CCCCcc----hhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCC
Q 026145           94 GVVVGHCGTPARASEILMVLCGI--------KSDHDA----AKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFG  161 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~--------~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  161 (243)
                      |..+...|++++|+..|.+++..        .| ...    ..+..+..++++|.++...|+|++|+..+++++.++|++
T Consensus        18 G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~   96 (162)
T 3rkv_A           18 GNELFVQKDYKEAIDAYRDALTRLDTLILREKP-GEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETN   96 (162)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCT-TSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc
Confidence            45566778999999999999876        11 000    023667899999999999999999999999999999998


Q ss_pred             chHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHH
Q 026145          162 GIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYT-EAYICQGDVFLAMDQYDA  216 (243)
Q Consensus       162 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~  216 (243)
                      .  .+|+.+|.++..+|++++|+..|+++++++|+++ .+...++.+....+++.+
T Consensus        97 ~--~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~  150 (162)
T 3rkv_A           97 E--KALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKA  150 (162)
T ss_dssp             H--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred             h--HHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            7  9999999999999999999999999999999998 667777777766554433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.54  E-value=4.1e-14  Score=100.70  Aligned_cols=109  Identities=14%  Similarity=0.051  Sum_probs=97.2

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |..+...|++++|+..|++++...|       .++..|+.+|.++...|++++|+..|++++.++|+++  .+++++|.+
T Consensus        25 a~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~   95 (142)
T 2xcb_A           25 GFNQYQAGKWDDAQKIFQALCMLDH-------YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP--RFPFHAAEC   95 (142)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT--HHHHHHHHH
T ss_pred             HHHHHHHccHHHHHHHHHHHHHhCC-------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc--HHHHHHHHH
Confidence            4556678899999999999999888       7889999999999999999999999999999999988  999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAM  211 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  211 (243)
                      +..+|++++|+..|+++++++|+++.....+..+...+
T Consensus        96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l  133 (142)
T 2xcb_A           96 HLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAML  133 (142)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence            99999999999999999999998876665555444433

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.54  E-value=3.9e-15  Score=121.45  Aligned_cols=130  Identities=12%  Similarity=0.034  Sum_probs=79.9

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHH-----------------HHHHHHHHHHHHhcCHHHHHHHHHHhhccC
Q 026145           96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEA-----------------LALRKRAEAEFEKANFSEADGFLSQAIELK  158 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  158 (243)
                      .+...|++++|+..|++++...|       ...                 .+++++|.++...|+|++|+..|++++.++
T Consensus       188 ~~~~~g~~~~A~~~y~~Al~~~p-------~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  260 (338)
T 2if4_A          188 SLFKEEKLEEAMQQYEMAIAYMG-------DDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE  260 (338)
T ss_dssp             HTCSSSCCHHHHHHHHHHHHHSC-------HHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhc-------cchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            34566789999999999988776       433                 489999999999999999999999999999


Q ss_pred             CCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHhccCCCchhh
Q 026145          159 PFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVF-LAMDQYDAAEKSYSTCLQIDPSIRRS  234 (243)
Q Consensus       159 p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~  234 (243)
                      |++.  .+|+++|.++..+|++++|+..|+++++++|++..++..++.+. ...+..+++...|.+++..+|+++..
T Consensus       261 p~~~--~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~~  335 (338)
T 2if4_A          261 EKNP--KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAK  335 (338)
T ss_dssp             TTCH--HHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------------
T ss_pred             CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Confidence            9987  99999999999999999999999999999999999999999884 45667888999999999999987643

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.54  E-value=3.1e-14  Score=111.56  Aligned_cols=144  Identities=15%  Similarity=0.125  Sum_probs=115.2

Q ss_pred             EecCCHhHHHHHHHHHhcCCCCC-cchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccC-----CCCc-hHHHHHhH
Q 026145           98 GHCGTPARASEILMVLCGIKSDH-DAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELK-----PFGG-IHVLYKDR  170 (243)
Q Consensus        98 ~~~~~~~~a~~~l~~~l~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~~~-~~~~~~~l  170 (243)
                      ...|++++|+..+++++...... .......+.++..+|.++...|++++|+..|++++...     ++++ ...++.++
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            44567888888887776421000 00113778899999999999999999999999999874     2221 34889999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------CCCchhh
Q 026145          171 CLARLTMGNFSAALEDVREALEL--------APNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQI--------DPSIRRS  234 (243)
Q Consensus       171 a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~  234 (243)
                      |.++...|++++|+..+++++.+        +|....++.++|.++...|++++|+..+++++.+        +|....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999999988        4677889999999999999999999999999998        6666666


Q ss_pred             hhhhhhc
Q 026145          235 KSFKVSS  241 (243)
Q Consensus       235 ~~~~a~i  241 (243)
                      +..++.+
T Consensus       172 ~~~la~~  178 (283)
T 3edt_B          172 KNNLASC  178 (283)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666554

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.54  E-value=5e-15  Score=100.28  Aligned_cols=95  Identities=14%  Similarity=0.184  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHH
Q 026145          127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNY------TEA  200 (243)
Q Consensus       127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~  200 (243)
                      .+..++.+|..++..|++++|+..|++++..+|+++  .++.++|.++..+|++++|+..++++++++|++      ..+
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~   80 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNP--VGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL   80 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence            467899999999999999999999999999999987  999999999999999999999999999999998      889


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Q 026145          201 YICQGDVFLAMDQYDAAEKSYST  223 (243)
Q Consensus       201 ~~~la~~~~~~g~~~~A~~~~~~  223 (243)
                      ++.+|.++..+|++++|+..+++
T Consensus        81 ~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           81 QYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHHhHhhhHhHHHH
Confidence            99999999999988887765543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.53  E-value=5.6e-14  Score=102.35  Aligned_cols=108  Identities=18%  Similarity=0.118  Sum_probs=98.5

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |..+...|++++|++.|++++...|       ..+..++.+|.++...|++++|+..|++++.++|++.  .+|+++|.+
T Consensus        18 g~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~   88 (164)
T 3sz7_A           18 GNAAMARKEYSKAIDLYTQALSIAP-------ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYS--KAWSRLGLA   88 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHST-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-------cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHHHHHHH
Confidence            4455678899999999999999888       7788999999999999999999999999999999987  999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLA  210 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  210 (243)
                      +..+|++++|+..|+++++++|++..+++.++.....
T Consensus        89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  125 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK  125 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            9999999999999999999999999888777765443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.53  E-value=8.3e-14  Score=104.62  Aligned_cols=131  Identities=12%  Similarity=0.042  Sum_probs=105.7

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcch---------hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAA---------KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIH  164 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~---------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~  164 (243)
                      |..+...|++++|++.|.+++...|.....         .......++.+|.++...|++++|+..|++++..+|++.  
T Consensus        45 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--  122 (198)
T 2fbn_A           45 GNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV--  122 (198)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccH--
Confidence            445567789999999999999876521100         001247899999999999999999999999999999987  


Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHhc
Q 026145          165 VLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAE-KSYSTCLQ  226 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~  226 (243)
                      .+++++|.++..+|++++|+..|+++++++|++..++..++.++..+++.+++. ..+.+.+.
T Consensus       123 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          123 KALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999998887 44555443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.53  E-value=5e-14  Score=101.19  Aligned_cols=100  Identities=14%  Similarity=0.044  Sum_probs=92.1

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |..+...|++++|+..|++++...|       .++..|+.+|.++...|++++|+..|++++.++|+++  .+++++|.+
T Consensus        28 g~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~lg~~   98 (148)
T 2vgx_A           28 AFNQYQSGXYEDAHXVFQALCVLDH-------YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP--RFPFHAAEC   98 (148)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT--HHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHcCc-------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc--hHHHHHHHH
Confidence            4556678899999999999999888       7889999999999999999999999999999999988  999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYI  202 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~  202 (243)
                      +..+|++++|+..|+++++++|+++....
T Consensus        99 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~  127 (148)
T 2vgx_A           99 LLQXGELAEAESGLFLAQELIANXPEFXE  127 (148)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence            99999999999999999999998765533

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.52  E-value=4.6e-14  Score=120.10  Aligned_cols=136  Identities=12%  Similarity=0.089  Sum_probs=84.3

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHH
Q 026145           96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL  175 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~  175 (243)
                      .+...|++++|...+++++...|       .....+..+|.++...|++++|+..|++++...|+++  .++..+|.++.
T Consensus       313 ~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~~  383 (514)
T 2gw1_A          313 MNFILQNYDQAGKDFDKAKELDP-------ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAP--EVPNFFAEILT  383 (514)
T ss_dssp             HHHHTTCTTHHHHHHHHHHHTCS-------SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCS--HHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCh-------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCH--HHHHHHHHHHH
Confidence            34445566666666666665554       3344566666666666666666666666666666655  66666666666


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHH---cCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          176 TMGNFSAALEDVREALELAPNYTE------AYICQGDVFLA---MDQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       176 ~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      ..|++++|+..+++++...|.++.      ++..+|.++..   .|++++|+..+++++.++|+++.++..++.
T Consensus       384 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~  457 (514)
T 2gw1_A          384 DKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQ  457 (514)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            666666666666666666665533      66666666666   666666666666666666666665555444

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.51  E-value=1.4e-13  Score=110.59  Aligned_cols=126  Identities=10%  Similarity=-0.037  Sum_probs=114.8

Q ss_pred             hHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHH-------hcCH-------HHHHHHHHHhhc-cCCCCchHHHHH
Q 026145          104 ARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFE-------KANF-------SEADGFLSQAIE-LKPFGGIHVLYK  168 (243)
Q Consensus       104 ~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~-------~~~~-------~~A~~~~~~al~-~~p~~~~~~~~~  168 (243)
                      ++|...|++++...|       ..+..|+.+|..+..       .|++       ++|+..|++++. +.|++.  .+|.
T Consensus        33 ~~a~~~~~~al~~~p-------~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~--~~~~  103 (308)
T 2ond_A           33 KRVMFAYEQCLLVLG-------HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM--LLYF  103 (308)
T ss_dssp             HHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCH--HHHH
T ss_pred             HHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccH--HHHH
Confidence            688899999998888       889999999998874       4775       999999999999 799977  8999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhh
Q 026145          169 DRCLARLTMGNFSAALEDVREALELAPNYTE-AYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFK  238 (243)
Q Consensus       169 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  238 (243)
                      .+|.++...|++++|...|++++++.|.++. +|..+|.++...|++++|+..|+++++.+|.+..++...
T Consensus       104 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~  174 (308)
T 2ond_A          104 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA  174 (308)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            9999999999999999999999999999887 999999999999999999999999999999887766433

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.51  E-value=2.6e-13  Score=106.74  Aligned_cols=137  Identities=12%  Similarity=-0.093  Sum_probs=117.3

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHH
Q 026145           96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL  175 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~  175 (243)
                      .+...|++++|.+.|+......|       ... ..+.+|.++++.++|++|+..|++++...+......+++++|.++.
T Consensus       111 ~L~~~g~y~eA~~~l~~~~~~~p-------~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~  182 (282)
T 4f3v_A          111 CEAAQGNYADAMEALEAAPVAGS-------EHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA  182 (282)
T ss_dssp             HHHHHTCHHHHHHHHTSSCCTTC-------HHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCC-------chH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH
Confidence            45668899999999998887776       677 8999999999999999999999988775422101258999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhC--CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          176 TMGNFSAALEDVREALELA--PN-YTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       176 ~~~~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      .+|++++|+..|++++...  |. .+++++++|.++..+|+.++|...|++++..+|+ +.++..+..-
T Consensus       183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~  250 (282)
T 4f3v_A          183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDP  250 (282)
T ss_dssp             HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred             HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence            9999999999999998644  55 6789999999999999999999999999999999 8887766543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.50  E-value=2.8e-14  Score=120.97  Aligned_cols=124  Identities=16%  Similarity=0.091  Sum_probs=104.8

Q ss_pred             eEEEecCCHhHHHHHHHHHhcCCCCCc--------chhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHH
Q 026145           95 VVVGHCGTPARASEILMVLCGIKSDHD--------AAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVL  166 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~--------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  166 (243)
                      ..+...|++++|+..|++++...|...        ........+++++|.++.+.++|++|+..|++++.++|++.  .+
T Consensus       276 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~--~a  353 (457)
T 1kt0_A          276 TVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE--KG  353 (457)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH--HH
Confidence            445667899999999999997765211        01122368899999999999999999999999999999987  99


Q ss_pred             HHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 026145          167 YKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKS  220 (243)
Q Consensus       167 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  220 (243)
                      |+++|.++..+|++++|+..|+++++++|++..++..++.++..++++++|...
T Consensus       354 ~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          354 LYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999988743

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.50  E-value=4.7e-14  Score=116.54  Aligned_cols=148  Identities=12%  Similarity=-0.003  Sum_probs=118.7

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-----hHHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-----IHVLY  167 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~  167 (243)
                      .|..+...|++++|.+.+++++.... ...+....+.+++.+|.++...|++++|+.++.+++++.+...     ...++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  187 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLI-FVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH  187 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGG-GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHh-hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            45566778899999999999987632 2223345788999999999999999999999999998855432     24688


Q ss_pred             HhHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----cC-CCchhhh
Q 026145          168 KDRCLARLTMGNFSAALEDVREALELAPNY------TEAYICQGDVFLAMDQYDAAEKSYSTCLQ-----ID-PSIRRSK  235 (243)
Q Consensus       168 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~-p~~~~~~  235 (243)
                      .++|.++..+|++++|+..+++++++.|..      ..++.++|.+|..+|++++|+..+++++.     .+ |....++
T Consensus       188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  267 (383)
T 3ulq_A          188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY  267 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence            999999999999999999999999875432      35889999999999999999999999998     45 6666666


Q ss_pred             hhhhhc
Q 026145          236 SFKVSS  241 (243)
Q Consensus       236 ~~~a~i  241 (243)
                      ..++.+
T Consensus       268 ~~l~~~  273 (383)
T 3ulq_A          268 FLITQI  273 (383)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665544

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.49  E-value=6.5e-14  Score=109.69  Aligned_cols=134  Identities=19%  Similarity=0.197  Sum_probs=114.2

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCC-CcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc--------CCCCch
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSD-HDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIEL--------KPFGGI  163 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~  163 (243)
                      .|..+...|++++|.+.+++++..... ........+..+..+|.++...|++++|+..|.+++..        +|.  .
T Consensus        49 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~  126 (283)
T 3edt_B           49 LALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD--V  126 (283)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH--H
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH--H
Confidence            355667788999999999998854200 00112377889999999999999999999999999988        344  3


Q ss_pred             HHHHHhHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145          164 HVLYKDRCLARLTMGNFSAALEDVREALEL--------APNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID  228 (243)
Q Consensus       164 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  228 (243)
                      ..++.++|.++..+|++++|+..+++++++        .|....++..+|.++..+|++++|+..+++++.+.
T Consensus       127 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  199 (283)
T 3edt_B          127 AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA  199 (283)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            489999999999999999999999999998        77778899999999999999999999999999873

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.49  E-value=7.3e-14  Score=110.99  Aligned_cols=134  Identities=12%  Similarity=-0.016  Sum_probs=113.0

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |..+...|++++|++.+++++...|       ..+..++.+|.++...|++++|+..|+++++++|++.  .+++++|.+
T Consensus        11 g~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~   81 (281)
T 2c2l_A           11 GNRLFVGRKYPEAAACYGRAITRNP-------LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV--KAHFFLGQC   81 (281)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCS-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH--HHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH--HHHHHHHHH
Confidence            3445667899999999999998887       6788999999999999999999999999999999987  999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcH-----HH--------------------------HHHHHHHHHHcCCHHHHHHHHH
Q 026145          174 RLTMGNFSAALEDVREALELAPNYT-----EA--------------------------YICQGDVFLAMDQYDAAEKSYS  222 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~-----~~--------------------------~~~la~~~~~~g~~~~A~~~~~  222 (243)
                      +..+|++++|+..|+++++++|+++     .+                          ...++..  ..|++++|++.++
T Consensus        82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~  159 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAERERELEECQ  159 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTS
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHH
Confidence            9999999999999999999988542     11                          1112222  3688999999999


Q ss_pred             HHhccCCCchhhhhhh
Q 026145          223 TCLQIDPSIRRSKSFK  238 (243)
Q Consensus       223 ~al~~~p~~~~~~~~~  238 (243)
                      ++++++|++......+
T Consensus       160 ~al~~~p~~~~~~~~l  175 (281)
T 2c2l_A          160 RNHEGHEDDGHIRAQQ  175 (281)
T ss_dssp             GGGTTTSCHHHHTHHH
T ss_pred             hhhccccchhhhhhHH
Confidence            9999999876655443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.49  E-value=7.4e-13  Score=90.76  Aligned_cols=109  Identities=23%  Similarity=0.237  Sum_probs=99.7

Q ss_pred             eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHH
Q 026145           95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLAR  174 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~  174 (243)
                      ..+...|++++|.+.+++++...|       .....++.+|.++...|++++|+..|++++...|.+.  .++..+|.++
T Consensus        17 ~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~   87 (125)
T 1na0_A           17 NAYYKQGDYDEAIEYYQKALELDP-------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAWYNLGNAY   87 (125)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCc-------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH--HHHHHHHHHH
Confidence            345567899999999999998776       5677899999999999999999999999999999977  8999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 026145          175 LTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMD  212 (243)
Q Consensus       175 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  212 (243)
                      ...|++++|+..+++++..+|+++.++..++.++...|
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999987764

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.49  E-value=7.3e-13  Score=86.16  Aligned_cols=85  Identities=26%  Similarity=0.318  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG  205 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  205 (243)
                      ..+..++.+|..+...|++++|+..|++++..+|++.  .++.++|.++...|++++|+..++++++++|+++.++..+|
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~   84 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG   84 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            5677899999999999999999999999999999977  89999999999999999999999999999999999999999


Q ss_pred             HHHHHcC
Q 026145          206 DVFLAMD  212 (243)
Q Consensus       206 ~~~~~~g  212 (243)
                      .++..+|
T Consensus        85 ~~~~~~g   91 (91)
T 1na3_A           85 NAKQKQG   91 (91)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9987765

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.48  E-value=4.4e-14  Score=113.54  Aligned_cols=138  Identities=16%  Similarity=0.108  Sum_probs=113.2

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHh
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKD  169 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~  169 (243)
                      |..|...|++++|+..+++++...+ ...+....+.++..+|.++.. |++++|+.+|++++.+.|...    ...++.+
T Consensus        83 g~~~~~~g~~~~A~~~~~~Al~l~~-~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~  160 (307)
T 2ifu_A           83 GMMLKDLQRMPEAVQYIEKASVMYV-ENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGK  160 (307)
T ss_dssp             HHHHHHTTCGGGGHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence            4556677899999999998875532 112223457789999999988 999999999999999876531    2478999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhh
Q 026145          170 RCLARLTMGNFSAALEDVREALELAPNY------TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRS  234 (243)
Q Consensus       170 la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  234 (243)
                      +|.++..+|+|++|+..|++++.+.|.+      ..++..+|.++..+|++++|+..|++++ ++|+....
T Consensus       161 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~  230 (307)
T 2ifu_A          161 ASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGS  230 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC
Confidence            9999999999999999999999986543      3478899999999999999999999999 99976644

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.48  E-value=8.3e-14  Score=115.05  Aligned_cols=137  Identities=11%  Similarity=0.062  Sum_probs=117.5

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYK  168 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~  168 (243)
                      .|..|...|++++|.+.+.+++...+.........+.++..+|.++...|++++|+..|++++.+.+...    ...++.
T Consensus       149 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  228 (383)
T 3ulq_A          149 MSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLY  228 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            4667778899999999999988654322222456788999999999999999999999999998865432    346899


Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 026145          169 DRCLARLTMGNFSAALEDVREALE-----LA-PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP  229 (243)
Q Consensus       169 ~la~~~~~~~~~~~A~~~~~~al~-----~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  229 (243)
                      ++|.++..+|++++|+..++++++     .+ |..+.++.++|.++..+|++++|+..+++++.+.+
T Consensus       229 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          229 NIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999     46 77889999999999999999999999999999854

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.48  E-value=4.9e-13  Score=116.09  Aligned_cols=131  Identities=15%  Similarity=0.064  Sum_probs=123.6

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcC----------HHHHHHHHHHhhccCCCCchHHHHHhHH
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKAN----------FSEADGFLSQAIELKPFGGIHVLYKDRC  171 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~~la  171 (243)
                      ..++|.+.++.++..+|       ....+|+.++.++...++          +++|++.+++++..+|++.  .+|+.++
T Consensus        44 ~~eeal~~~~~~l~~nP-------~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y--~aW~hR~  114 (567)
T 1dce_A           44 LDESVLELTSQILGANP-------DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY--GTWHHRC  114 (567)
T ss_dssp             CSHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCc-------hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH--HHHHHHH
Confidence            34678999999999998       889999999999999988          9999999999999999987  9999999


Q ss_pred             HHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          172 LARLTMG--NFSAALEDVREALELAPNYTEAYICQGDVFLAMD-QYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       172 ~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      .++..++  +++++++.++++++.+|.+..+|..++.++...| .++++++++.++++.+|++..+|.++..+
T Consensus       115 w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~l  187 (567)
T 1dce_A          115 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCL  187 (567)
T ss_dssp             HHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHH
T ss_pred             HHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHH
Confidence            9999999  7799999999999999999999999999999999 99999999999999999999999887654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.48  E-value=4.3e-13  Score=110.69  Aligned_cols=125  Identities=14%  Similarity=0.090  Sum_probs=107.7

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCC---------CcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSD---------HDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIH  164 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~---------~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~  164 (243)
                      |..+...|++++|++.|++++...+.         ........+..+.++|.++.+.++|++|+.+|+++++++|++.  
T Consensus       230 g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~--  307 (370)
T 1ihg_A          230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT--  307 (370)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH--
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhH--
Confidence            34456678999999999999862110         0001227788999999999999999999999999999999987  


Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 026145          165 VLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKS  220 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  220 (243)
                      .+++++|.++..+|++++|+..|+++++++|++..++..++.++..+++++++...
T Consensus       308 ~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          308 KALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888643

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.48  E-value=1.1e-13  Score=95.86  Aligned_cols=97  Identities=21%  Similarity=0.140  Sum_probs=85.2

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |..+...|++++|+..+++++...|       ..+.+|+.+|.++...|++++|+..|+++++++|++.  .++.++|.+
T Consensus        24 g~~~~~~g~~~~A~~~~~~al~~~P-------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~la~~   94 (121)
T 1hxi_A           24 GLSMLKLANLAEAALAFEAVCQKEP-------EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI--AVHAALAVS   94 (121)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHST-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHH
Confidence            4556678899999999999999998       7899999999999999999999999999999999987  999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHH
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTE  199 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~  199 (243)
                      +...|++++|+..++++++++|++..
T Consensus        95 ~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           95 HTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            99999999999999999999997653

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.48  E-value=2.2e-13  Score=93.15  Aligned_cols=85  Identities=19%  Similarity=0.195  Sum_probs=81.0

Q ss_pred             HHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 026145          146 EADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCL  225 (243)
Q Consensus       146 ~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  225 (243)
                      +|+..|+++++.+|+++  .+++++|.++...|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|++++
T Consensus         3 ~a~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQGTDNM--LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTTTCCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcH--HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            57899999999999987  9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCch
Q 026145          226 QIDPSIR  232 (243)
Q Consensus       226 ~~~p~~~  232 (243)
                      .++|+..
T Consensus        81 ~~~~~~~   87 (115)
T 2kat_A           81 AAAQSRG   87 (115)
T ss_dssp             HHHHHHT
T ss_pred             Hhccccc
Confidence            9988644

>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A

Probab=99.48  E-value=6.2e-14  Score=95.14  Aligned_cols=78  Identities=26%  Similarity=0.483  Sum_probs=68.8

Q ss_pred             CCcEEEEccC--------CccCccCHHHHHHHHHh----c-CC-CcEEEEeeCCCCCCCCCCeEEEecCCeEEEecCCHh
Q 026145           39 ELKELRVCTN--------RTCRRQGSMQILETLSS----L-AP-PEVAVKSCGCLGRCGAGPNLVALPDGVVVGHCGTPA  104 (243)
Q Consensus        39 ~~~~i~vC~~--------~~c~~~G~~~~~~~l~~----~-g~-~~v~v~~~gc~g~c~~~p~~~~~~~g~~~~~~~~~~  104 (243)
                      .+++|+||++        ++|...|+.+++++|++    . |+ +.+.+..++|+|.|..+|+++++|++.+|..+ +++
T Consensus         2 ~~~~I~VC~~~r~~~~~~~~C~~~Ga~~l~~~l~~~l~~~~g~~~~v~v~~~~ClG~C~~gP~v~V~P~~~~y~~v-t~e   80 (110)
T 1m2d_A            2 EFKHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGPVVVVYPDGVWYGQV-KPE   80 (110)
T ss_dssp             -CEEEEEECCCCCTTCTTCCTGGGTHHHHHHHHHHHHHHCHHHHTTEEEEEESCCSCGGGCSCEEEETTTEEECSC-CGG
T ss_pred             CceEEEECCCCCCCCCCCCCchhcCHHHHHHHHHHHHHHhcCCCCeEEEEECCCCCccCCCCEEEEEeCCEEEecC-CHH
Confidence            3578999999        89999999999999998    2 33 35999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHhcCC
Q 026145          105 RASEILMVLCGIK  117 (243)
Q Consensus       105 ~a~~~l~~~l~~~  117 (243)
                      ++.++++.++..+
T Consensus        81 ~v~~il~~~l~~g   93 (110)
T 1m2d_A           81 DVDEIVEKHLKGG   93 (110)
T ss_dssp             GHHHHHHHTTTTS
T ss_pred             HHHHHHHHHHHCC
Confidence            9999999876443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.48  E-value=9.8e-14  Score=96.99  Aligned_cols=103  Identities=16%  Similarity=0.048  Sum_probs=89.7

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-----hHHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-----IHVLYK  168 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~  168 (243)
                      |..+...|++++|++.|++++...|       ..+.++.++|.++...|+|++|+..|+++++++|++.     ...++.
T Consensus        15 G~~~~~~~~~~~A~~~y~~Al~~~p-------~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A           15 GNAAYKQKDFEKAHVHYDKAIELDP-------SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            4455677899999999999999998       7788999999999999999999999999999988753     246899


Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 026145          169 DRCLARLTMGNFSAALEDVREALELAPNYTEAYICQ  204 (243)
Q Consensus       169 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  204 (243)
                      ++|.++..+|++++|++.|++++...|+ ++....+
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l  122 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKV  122 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHH
Confidence            9999999999999999999999999885 4544433

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.47  E-value=4.8e-13  Score=106.64  Aligned_cols=134  Identities=11%  Similarity=0.018  Sum_probs=109.7

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCC---CCc--hHHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKP---FGG--IHVLYK  168 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~--~~~~~~  168 (243)
                      |..+...+++++|++.+++++...+ ...+....+.++..+|.++...|++++|+.+|++++....   .+.  ...+++
T Consensus       122 ~~~~~~~~~~~~Ai~~~~~al~~~~-~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  200 (293)
T 3u3w_A          122 AAYVLKKVDYEYCILELKKLLNQQL-TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY  200 (293)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHHHTCC-CCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred             HHHHHcccCHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence            3444556699999999999987543 2233345677899999999999999999999999995321   111  346899


Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcC-CHHHHHHHHHHHhccC
Q 026145          169 DRCLARLTMGNFSAALEDVREALELAPNY------TEAYICQGDVFLAMD-QYDAAEKSYSTCLQID  228 (243)
Q Consensus       169 ~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~  228 (243)
                      ++|.+|..+|+|++|+..+++++++.+..      +.+++++|.+|..+| .+++|++.+++++.+.
T Consensus       201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999999876433      789999999999999 5799999999999764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.47  E-value=8.7e-13  Score=89.56  Aligned_cols=105  Identities=16%  Similarity=0.104  Sum_probs=96.5

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHH
Q 026145           96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL  175 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~  175 (243)
                      .+...|++++|...+++++...|       .....++.+|.++...|++++|+..+++++..+|++.  .++..+|.++.
T Consensus        13 ~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~   83 (118)
T 1elw_A           13 KALSVGNIDDALQCYSEAIKLDP-------HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG--KGYSRKAAALE   83 (118)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHCC-------CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH--HHHHHHHHHHH
Confidence            34567899999999999998887       6688999999999999999999999999999999987  99999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 026145          176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFL  209 (243)
Q Consensus       176 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  209 (243)
                      .+|++++|+..++++++.+|+++.++..++.+..
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            9999999999999999999999999999887753

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.47  E-value=2.4e-13  Score=97.54  Aligned_cols=93  Identities=17%  Similarity=0.069  Sum_probs=84.7

Q ss_pred             ecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCH----------HHHHHHHHHhhccCCCCchHHHHH
Q 026145           99 HCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANF----------SEADGFLSQAIELKPFGGIHVLYK  168 (243)
Q Consensus        99 ~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~  168 (243)
                      +.+.+++|.+.++.++..+|       ..+.+|+++|.++...+++          ++|+..|+++|+++|++.  .+|+
T Consensus        14 r~~~feeA~~~~~~Ai~l~P-------~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~--~A~~   84 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNP-------LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD--EAVW   84 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH--HHHH
Confidence            44588999999999999998       8899999999999998875          599999999999999987  9999


Q ss_pred             hHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCcHHH
Q 026145          169 DRCLARLTMG-----------NFSAALEDVREALELAPNYTEA  200 (243)
Q Consensus       169 ~la~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~  200 (243)
                      ++|.+|..+|           ++++|+.+|++|++++|++...
T Consensus        85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y  127 (158)
T 1zu2_A           85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY  127 (158)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence            9999999885           8999999999999999998543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.46  E-value=9.5e-13  Score=105.46  Aligned_cols=131  Identities=9%  Similarity=-0.073  Sum_probs=122.6

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhc--CHHHHHHHHHHhhccCCCCchHHHHHhHHHHH----H
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKA--NFSEADGFLSQAIELKPFGGIHVLYKDRCLAR----L  175 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~----~  175 (243)
                      ..++|++..+.++..+|       ....+|+.++.++...+  ++++++..+++++..+|++.  .+|+.++.++    .
T Consensus        48 ~s~~aL~~t~~~L~~nP-------~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y--~aW~~R~~iL~~~~~  118 (306)
T 3dra_A           48 YSERALHITELGINELA-------SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY--QIWNYRQLIIGQIME  118 (306)
T ss_dssp             CSHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC--HHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCc-------HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH--HHHHHHHHHHHHHHH
Confidence            44689999999999998       88899999999999999  99999999999999999988  9999999999    7


Q ss_pred             Hc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          176 TM---GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYD--AAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       176 ~~---~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ..   +++++++..++++++.+|.+..+|..++.++..+|.++  ++++.+.++++.+|.|-.+|.++..+
T Consensus       119 ~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~l  189 (306)
T 3dra_A          119 LNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFL  189 (306)
T ss_dssp             HTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            77   79999999999999999999999999999999999998  99999999999999999999887654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.46  E-value=3.7e-13  Score=116.85  Aligned_cols=130  Identities=6%  Similarity=-0.062  Sum_probs=122.8

Q ss_pred             HhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhc--CHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcC-C
Q 026145          103 PARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKA--NFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMG-N  179 (243)
Q Consensus       103 ~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~-~  179 (243)
                      ++++.+.++.++..+|       +...+|+.++.++.+.+  ++++|++.++++++.+|.+.  .+|..++.+...++ .
T Consensus        89 ~~~eL~~~~~~l~~~p-------K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~--~aW~~R~~~l~~l~~~  159 (567)
T 1dce_A           89 VKAELGFLESCLRVNP-------KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF--HCWDYRRFVAAQAAVA  159 (567)
T ss_dssp             HHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccc--cHHHHHHHHHHHcCCC
Confidence            8999999999999998       88999999999999999  77999999999999999987  99999999999999 9


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          180 FSAALEDVREALELAPNYTEAYICQGDVFLAM--------------DQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       180 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      +++++++++++++.+|.+..+|..++.++..+              +.+++|++++.+++.++|++..+|.+++-+
T Consensus       160 ~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~l  235 (567)
T 1dce_A          160 PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL  235 (567)
T ss_dssp             HHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence            99999999999999999999999999999885              668999999999999999999999887644

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.46  E-value=1.5e-12  Score=103.77  Aligned_cols=134  Identities=7%  Similarity=-0.060  Sum_probs=110.0

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHhHH
Q 026145           96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKDRC  171 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~la  171 (243)
                      .+...|++++|.+.+...+...+ ...........++.+|..+...|++++|+..|++++...+...    ...+++++|
T Consensus        84 ~~~~~~~y~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg  162 (293)
T 2qfc_A           84 MLCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIA  162 (293)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHhcccc-CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            44567799999999999887765 3333334555677889999999999999999999998754431    246899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHH---HhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 026145          172 LARLTMGNFSAALEDVREAL---ELAPNYT----EAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS  230 (243)
Q Consensus       172 ~~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  230 (243)
                      .+|..+|++++|+..|++++   +..|++.    .+++++|.+|..+|++++|+..+++++.+.++
T Consensus       163 ~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~  228 (293)
T 2qfc_A          163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999   4556543    68999999999999999999999999988643

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.46  E-value=3.5e-13  Score=107.18  Aligned_cols=145  Identities=17%  Similarity=0.188  Sum_probs=119.5

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCc--chhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccC--------CCCch
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHD--AAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELK--------PFGGI  163 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~  163 (243)
                      +..+...|++++|...+++++.... ..  ......+..+..+|.++...|++++|+..|++++...        |.  .
T Consensus        34 ~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~  110 (311)
T 3nf1_A           34 VIQYASQGRYEVAVPLCKQALEDLE-KTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA--V  110 (311)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHH-HHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH--H
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH--H
Confidence            4566778899999999999886310 00  0122778899999999999999999999999999873        33  3


Q ss_pred             HHHHHhHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------
Q 026145          164 HVLYKDRCLARLTMGNFSAALEDVREALELA--------PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQI--------  227 (243)
Q Consensus       164 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------  227 (243)
                      ..++.++|.++...|++++|+..+++++++.        |....++..+|.++...|++++|+..+++++.+        
T Consensus       111 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  190 (311)
T 3nf1_A          111 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPD  190 (311)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTT
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            4889999999999999999999999999874        556788999999999999999999999999998        


Q ss_pred             CCCchhhhhhhhhc
Q 026145          228 DPSIRRSKSFKVSS  241 (243)
Q Consensus       228 ~p~~~~~~~~~a~i  241 (243)
                      +|....++..++.+
T Consensus       191 ~~~~~~~~~~la~~  204 (311)
T 3nf1_A          191 DPNVAKTKNNLASC  204 (311)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            66666666655543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.46  E-value=1.5e-12  Score=103.84  Aligned_cols=133  Identities=12%  Similarity=0.024  Sum_probs=110.1

Q ss_pred             eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhc---cCCCCc--hHHHHHh
Q 026145           95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIE---LKPFGG--IHVLYKD  169 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~p~~~--~~~~~~~  169 (243)
                      ..+...|++++|++.+.+++...+ ........+.+++.+|.++...|++++|+.+|++++.   ..|++.  ...++++
T Consensus       123 ~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~n  201 (293)
T 2qfc_A          123 AYVLKKVDYEYCILELKKLLNQQL-TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYN  201 (293)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHTTCC-CSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHh
Confidence            345566799999999999987654 2233334677999999999999999999999999994   455432  1268999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHH-HHHHHHHhccC
Q 026145          170 RCLARLTMGNFSAALEDVREALELAPN------YTEAYICQGDVFLAMDQYDAA-EKSYSTCLQID  228 (243)
Q Consensus       170 la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~  228 (243)
                      +|.+|..+|+|++|+..+++++++.+.      ...+++++|.+|..+|++++| ...+++++.+.
T Consensus       202 lg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          202 HAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            999999999999999999999987642      278899999999999999999 78899998764

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.45  E-value=9.4e-14  Score=102.25  Aligned_cols=103  Identities=17%  Similarity=0.128  Sum_probs=92.4

Q ss_pred             HHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCH--
Q 026145          138 EFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDV-FLAMDQY--  214 (243)
Q Consensus       138 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--  214 (243)
                      +...|++++|+..+++++..+|++.  .++..+|.++...|++++|+..|+++++++|+++.+++.+|.+ +...|++  
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNS--EQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence            4567899999999999999999987  9999999999999999999999999999999999999999999 8899999  


Q ss_pred             HHHHHHHHHHhccCCCchhhhhhhhhcc
Q 026145          215 DAAEKSYSTCLQIDPSIRRSKSFKVSST  242 (243)
Q Consensus       215 ~~A~~~~~~al~~~p~~~~~~~~~a~i~  242 (243)
                      ++|+..+++++.++|+++.++..++.+.
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~  125 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDA  125 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            9999999999999999999988877653

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=1.8e-12  Score=91.91  Aligned_cols=111  Identities=19%  Similarity=0.188  Sum_probs=98.4

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      +..+...|++++|++.+++++...|+    .......++.+|.++...+++++|+..|++++..+|++.  .+++++|.+
T Consensus        35 a~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~  108 (148)
T 2dba_A           35 GNELFKCGDYGGALAAYTQALGLDAT----PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV--KALYRRSQA  108 (148)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHTSCCC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCH--HHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHccc----chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCH--HHHHHHHHH
Confidence            45566788999999999999988861    111378899999999999999999999999999999987  999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLA  210 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  210 (243)
                      +..+|++++|+..++++++++|++..++..++.+...
T Consensus       109 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          109 LEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            9999999999999999999999999999888877543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.45  E-value=2.1e-13  Score=112.52  Aligned_cols=138  Identities=13%  Similarity=-0.044  Sum_probs=116.8

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCC----chHHHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFG----GIHVLYK  168 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~  168 (243)
                      .|..|...|+++.|...+.+++...+.........+.++..+|.++...|++++|++.|.+++++.+..    ....++.
T Consensus       147 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  226 (378)
T 3q15_A          147 VAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLL  226 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            356677888999999999998865431111233678899999999999999999999999999874321    1357899


Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHH-----hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 026145          169 DRCLARLTMGNFSAALEDVREALE-----LAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS  230 (243)
Q Consensus       169 ~la~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  230 (243)
                      ++|.++..+|++++|+..+++++.     .+|..+.+++.+|.++..+|++++|+..+++++.+.+.
T Consensus       227 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          227 NIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999     77888899999999999999999999999999998654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.45  E-value=2.3e-13  Score=112.33  Aligned_cols=148  Identities=11%  Similarity=-0.073  Sum_probs=122.7

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-----hHHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-----IHVLY  167 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~  167 (243)
                      .|..+...|++++|+..+++++...+ ...+....+.+++.+|.++...|++++|+.++.+++++.+...     ...++
T Consensus       107 ~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  185 (378)
T 3q15_A          107 RGMYEFDQKEYVEAIGYYREAEKELP-FVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL  185 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGG-GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHh-hCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence            35556678899999999999987653 2233456788999999999999999999999999998765321     35688


Q ss_pred             HhHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----cCCCchhhhh
Q 026145          168 KDRCLARLTMGNFSAALEDVREALELAP------NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ-----IDPSIRRSKS  236 (243)
Q Consensus       168 ~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~  236 (243)
                      .++|.++..+|++++|+..+++++++.+      ....++.++|.+|..+|++++|+..+++++.     .+|....++.
T Consensus       186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  265 (378)
T 3q15_A          186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF  265 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence            9999999999999999999999998643      1246899999999999999999999999999     7777776666


Q ss_pred             hhhhc
Q 026145          237 FKVSS  241 (243)
Q Consensus       237 ~~a~i  241 (243)
                      .++.+
T Consensus       266 ~la~~  270 (378)
T 3q15_A          266 GLSWT  270 (378)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.44  E-value=2.6e-13  Score=97.54  Aligned_cols=109  Identities=17%  Similarity=0.097  Sum_probs=91.3

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCc-----chhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc-------CCCC
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHD-----AAKNLEALALRKRAEAEFEKANFSEADGFLSQAIEL-------KPFG  161 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------~p~~  161 (243)
                      |..+...|++++|++.|++++...|+..     ...+..+.+|.++|.++.+.|+|++|+..|+++|++       +|++
T Consensus        18 G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~   97 (159)
T 2hr2_A           18 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   97 (159)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCch
Confidence            3444567899999999999998887310     112235669999999999999999999999999999       9997


Q ss_pred             chHHHH----HhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 026145          162 GIHVLY----KDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQ  204 (243)
Q Consensus       162 ~~~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  204 (243)
                      .  .+|    +++|.++..+|++++|+..|+++++++|++..+.-.+
T Consensus        98 ~--~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~  142 (159)
T 2hr2_A           98 G--KLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK  142 (159)
T ss_dssp             H--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred             H--HHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            6  999    9999999999999999999999999999875443333

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.44  E-value=4.1e-13  Score=106.76  Aligned_cols=135  Identities=18%  Similarity=0.194  Sum_probs=113.1

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCC-CcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc--------CCCCchH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSD-HDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIEL--------KPFGGIH  164 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~  164 (243)
                      +..+...|++++|.+.+++++..... ...........+..+|.++...|++++|+..|++++..        .|..  .
T Consensus       118 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~--~  195 (311)
T 3nf1_A          118 AVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNV--A  195 (311)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHH--H
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHH--H
Confidence            45667788999999999988754200 00112367888999999999999999999999999998        5553  3


Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHHHHHh-------------------------------------------------CC
Q 026145          165 VLYKDRCLARLTMGNFSAALEDVREALEL-------------------------------------------------AP  195 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-------------------------------------------------~p  195 (243)
                      .++..+|.++..+|++++|+..++++++.                                                 .|
T Consensus       196 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  275 (311)
T 3nf1_A          196 KTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSP  275 (311)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCc
Confidence            88999999999999999999999999974                                                 46


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 026145          196 NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS  230 (243)
Q Consensus       196 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  230 (243)
                      ..+.++..+|.+|..+|++++|+..+++++++.|+
T Consensus       276 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          276 TVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            66788999999999999999999999999998875

>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}

Probab=99.44  E-value=2.7e-14  Score=92.40  Aligned_cols=73  Identities=21%  Similarity=0.450  Sum_probs=63.9

Q ss_pred             cCCCcEEEEccCCccCccCHHHHHHHHHh-cC---C-----CcEEEEeeCCCCCCCCCCeEEEecCCeEEEecCCHhHHH
Q 026145           37 NAELKELRVCTNRTCRRQGSMQILETLSS-LA---P-----PEVAVKSCGCLGRCGAGPNLVALPDGVVVGHCGTPARAS  107 (243)
Q Consensus        37 ~~~~~~i~vC~~~~c~~~G~~~~~~~l~~-~g---~-----~~v~v~~~gc~g~c~~~p~~~~~~~g~~~~~~~~~~~a~  107 (243)
                      +.++++|+||++++|...|+.+++++|++ ++   .     +.+.+..++|+|.|..+|++.+.  +.+|.++ +++++.
T Consensus         3 p~g~~~I~VC~g~~C~~~Ga~~v~~~l~~~l~~~~~~tt~d~~v~l~~~~ClG~C~~~P~v~V~--~~~y~~v-t~e~v~   79 (85)
T 2auv_A            3 PKGKYPISVCMGTACFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCVGGCALAPIVMVG--EKVYGNV-TPGQVK   79 (85)
T ss_dssp             SCCSBCEECCCCHHHHTTTHHHHHHHHHHHHCCSSSSSSSSCCBCCBSSSSSSSCTTSCCCEEG--GGCCCCS-SSSHHH
T ss_pred             CCCCEEEEECCCchHHHcCHHHHHHHHHHHhCcccCCcCCCCeEEEEECCccCcCCCCCEEEEC--CEEECCC-CHHHHH
Confidence            34778999999999999999999999998 22   2     36999999999999999999985  7899988 999999


Q ss_pred             HHHHH
Q 026145          108 EILMV  112 (243)
Q Consensus       108 ~~l~~  112 (243)
                      +++++
T Consensus        80 ~il~~   84 (85)
T 2auv_A           80 KILAE   84 (85)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98875

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.44  E-value=6.5e-13  Score=105.87  Aligned_cols=134  Identities=7%  Similarity=-0.076  Sum_probs=106.1

Q ss_pred             EEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHhHHH
Q 026145           97 VGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKDRCL  172 (243)
Q Consensus        97 ~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~la~  172 (243)
                      +...|++++|.+++++++...+ ...........+..+|..+...+++++|+..|++++...+...    ...++.++|.
T Consensus        85 ~~~~~~y~~a~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~  163 (293)
T 3u3w_A           85 LCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN  163 (293)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHhcccc-CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence            3456799999999999987654 2222122244455689999989999999999999998654432    1347999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145          173 ARLTMGNFSAALEDVREALELA-------PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI  231 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  231 (243)
                      +|..+|++++|+..|+++++..       +....+++++|.+|..+|++++|+..+++++.+.++.
T Consensus       164 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~  229 (293)
T 3u3w_A          164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI  229 (293)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999532       2235689999999999999999999999999987544

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.44  E-value=1.2e-12  Score=104.87  Aligned_cols=131  Identities=8%  Similarity=-0.069  Sum_probs=123.6

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHH----HHh---cCHHHHHHHHHHhhccCCCCchHHHHHhHHHHH
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAE----FEK---ANFSEADGFLSQAIELKPFGGIHVLYKDRCLAR  174 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~----~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~  174 (243)
                      .++++++.++.++..+|       ....+|+.++.++    ...   +++++++..++++++.+|.+.  .+|..++.+.
T Consensus        84 ~~~eeL~~~~~~L~~nP-------k~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny--~aW~~R~~vl  154 (306)
T 3dra_A           84 NLYDELDWCEEIALDNE-------KNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNH--HVWSYRKWLV  154 (306)
T ss_dssp             CHHHHHHHHHHHHHHCT-------TCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHCc-------ccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHH
Confidence            89999999999999998       8888999999998    666   789999999999999999987  9999999999


Q ss_pred             HHcCCHH--HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC------HHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          175 LTMGNFS--AALEDVREALELAPNYTEAYICQGDVFLAMDQ------YDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       175 ~~~~~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ..++.++  ++++.++++++.+|.+..+|..++.++...++      ++++++.+.+++..+|++..+|.++..+
T Consensus       155 ~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~l  229 (306)
T 3dra_A          155 DTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGI  229 (306)
T ss_dssp             HHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHH
Confidence            9999999  99999999999999999999999999999998      9999999999999999999999877654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.44  E-value=2.9e-13  Score=89.85  Aligned_cols=93  Identities=16%  Similarity=0.151  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHH-HHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 026145          131 LRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHV-LYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFL  209 (243)
Q Consensus       131 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  209 (243)
                      .+.+|..+...|++++|+..|+++++.+|++.  . +++++|.++..+|++++|+..|+++++++|++..++.+      
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGK--DEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR------   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTH--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH------
Confidence            35788999999999999999999999999987  8 99999999999999999999999999999999988754      


Q ss_pred             HcCCHHHHHHHHHHHhccCCCchh
Q 026145          210 AMDQYDAAEKSYSTCLQIDPSIRR  233 (243)
Q Consensus       210 ~~g~~~~A~~~~~~al~~~p~~~~  233 (243)
                        +.+.+++..|++++..+|+++.
T Consensus        75 --~~~~~a~~~~~~~~~~~p~~~~   96 (99)
T 2kc7_A           75 --KMVMDILNFYNKDMYNQLEHHH   96 (99)
T ss_dssp             --HHHHHHHHHHCCTTHHHHCCSS
T ss_pred             --HHHHHHHHHHHHHhccCccccc
Confidence              6688899999999988887654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.43  E-value=6.4e-13  Score=93.28  Aligned_cols=112  Identities=14%  Similarity=-0.049  Sum_probs=99.0

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |..+...|++++|...+.+++...|       ..+.+++.+|.++...|++++|+..|++++.++|++.  .+++++|.+
T Consensus        16 g~~~~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l~~~   86 (137)
T 3q49_B           16 GNRLFVGRKYPEAAACYGRAITRNP-------LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV--KAHFFLGQC   86 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred             HHHHHHhCcHHHHHHHHHHHHhhCc-------CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH--HHHHHHHHH
Confidence            4455678899999999999998887       6788999999999999999999999999999999987  999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHcCCH
Q 026145          174 RLTMGNFSAALEDVREALELAPN-----YTEAYICQGDVFLAMDQY  214 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~  214 (243)
                      +..+|++++|+..++++++++|+     +..+...+..+....+..
T Consensus        87 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~  132 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS  132 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999987     667777777666554433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.43  E-value=2.3e-12  Score=101.27  Aligned_cols=128  Identities=14%  Similarity=0.135  Sum_probs=97.5

Q ss_pred             eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHH----hcCHHHHHHHHHHhhccCCCCchHHHHHhH
Q 026145           95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFE----KANFSEADGFLSQAIELKPFGGIHVLYKDR  170 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~l  170 (243)
                      ..+...|++++|.+.|++++..+         .+.+++.+|..+..    .+++++|+.+|+++++..  ++  .+++++
T Consensus        14 ~~~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~--~a~~~l   80 (273)
T 1ouv_A           14 AKSYKEKDFTQAKKYFEKACDLK---------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YS--NGCHLL   80 (273)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH--HHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CH--HHHHHH
Confidence            34455668888888888887633         35677888888888    888888888888888775  44  778888


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145          171 CLARLT----MGNFSAALEDVREALELAPNYTEAYICQGDVFLA----MDQYDAAEKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       171 a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~a  239 (243)
                      |.++..    .+++++|+..|+++++.  +++.+++.+|.+|..    .+++++|+.+|+++++.+  ++.++..++
T Consensus        81 g~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg  153 (273)
T 1ouv_A           81 GNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG  153 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             HHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence            888888    88888888888888876  367888888888888    888888888888888765  344444433

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.43  E-value=2.7e-12  Score=89.09  Aligned_cols=114  Identities=14%  Similarity=0.077  Sum_probs=94.3

Q ss_pred             eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHH
Q 026145           95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLA  173 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~  173 (243)
                      ..+...|++++|.+.+++++...|+    ......+++.+|.++...|++++|+..|++++..+|++. ...+++.+|.+
T Consensus        10 ~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~   85 (129)
T 2xev_A           10 FDALKNGKYDDASQLFLSFLELYPN----GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS   85 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSS----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHCCC----CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence            3445678999999999999987751    113347899999999999999999999999999999972 12889999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMD  212 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  212 (243)
                      +..+|++++|+..++++++..|+++.+...+..+-...+
T Consensus        86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~  124 (129)
T 2xev_A           86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL  124 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence            999999999999999999999999887766655544433

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.42  E-value=1.5e-12  Score=99.06  Aligned_cols=133  Identities=10%  Similarity=0.016  Sum_probs=105.2

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhc----CHHHHHHHHHHhhccCCCCchHHHHHh
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKA----NFSEADGFLSQAIELKPFGGIHVLYKD  169 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~~~  169 (243)
                      |..|...+++++|.+.|+++...+.         +.+++.+|..+.. +    ++++|+.+|+++.+  +.++  .++++
T Consensus        25 g~~~~~~~~~~~A~~~~~~a~~~g~---------~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~--~a~~~   90 (212)
T 3rjv_A           25 ADTWVSSGDYQKAEYWAQKAAAQGD---------GDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSK--SGEIV   90 (212)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHTTC---------HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCH--HHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCH--HHHHH
Confidence            3344456789999999998886553         6778888888887 6    89999999999865  4554  78888


Q ss_pred             HHHHHHH----cCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145          170 RCLARLT----MGNFSAALEDVREALELAP--NYTEAYICQGDVFLA----MDQYDAAEKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       170 la~~~~~----~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~a  239 (243)
                      +|.+|..    .+++++|+.+|+++++..|  .++.+++++|.+|..    .+++++|+.+|++++++ |.++.+...++
T Consensus        91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg  169 (212)
T 3rjv_A           91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAG  169 (212)
T ss_dssp             HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHH
T ss_pred             HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHH
Confidence            9988887    8889999999999988877  348889999999988    78899999999999887 56666666555


Q ss_pred             hc
Q 026145          240 SS  241 (243)
Q Consensus       240 ~i  241 (243)
                      .+
T Consensus       170 ~~  171 (212)
T 3rjv_A          170 MM  171 (212)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.42  E-value=3.2e-12  Score=103.19  Aligned_cols=129  Identities=6%  Similarity=-0.062  Sum_probs=119.7

Q ss_pred             HhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhc--CHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCC-
Q 026145          103 PARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKA--NFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN-  179 (243)
Q Consensus       103 ~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~-  179 (243)
                      +++++..++.++..+|       .+..+|..++.++...+  ++++++..+.++++.+|.|.  .+|..++.+....+. 
T Consensus        90 l~~EL~~~~~~L~~~P-------Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy--~AW~~R~~vl~~l~~~  160 (331)
T 3dss_A           90 VKAELGFLESCLRVNP-------KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF--HCWDYRRFVAAQAAVA  160 (331)
T ss_dssp             HHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhCcC
Confidence            5788889999998888       88999999999999988  49999999999999999987  999999999999999 


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          180 FSAALEDVREALELAPNYTEAYICQGDVFLAM--------------DQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       180 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      +++++++++++++.+|.+..+|..++.++..+              +.++++++++.+++..+|++..+|.++.-
T Consensus       161 ~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~  235 (331)
T 3dss_A          161 PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRW  235 (331)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            69999999999999999999999999999887              56899999999999999999999986643

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.42  E-value=8.2e-13  Score=94.61  Aligned_cols=135  Identities=15%  Similarity=0.032  Sum_probs=109.8

Q ss_pred             eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHhH
Q 026145           95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKDR  170 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~l  170 (243)
                      ..+...|++++|.+.+++++...+ ........+..+..+|.++...|++++|+..+++++...+...    ...++.++
T Consensus        17 ~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l   95 (164)
T 3ro3_A           17 NTHYLLGNFRDAVIAHEQRLLIAK-EFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL   95 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHH-HhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence            344567899999999998886543 1222334556899999999999999999999999998765421    24688999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 026145          171 CLARLTMGNFSAALEDVREALELAP------NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS  230 (243)
Q Consensus       171 a~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  230 (243)
                      |.++...|++++|+..+++++...+      ....++..+|.++...|++++|+..+++++++..+
T Consensus        96 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A           96 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999997742      22568899999999999999999999999987554

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.41  E-value=8.8e-13  Score=111.41  Aligned_cols=131  Identities=21%  Similarity=0.072  Sum_probs=113.7

Q ss_pred             CCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHH---hcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc
Q 026145          101 GTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFE---KANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM  177 (243)
Q Consensus       101 ~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~  177 (243)
                      +++++|++.|++++...|       .++.++..+|.++..   .+++++|++.|+++++++|++.  .++.++|..+...
T Consensus       152 ~~y~~A~~~~~kal~~~p-------~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~--~~~~~l~~~~~~~  222 (472)
T 4g1t_A          152 NQNERAKVCFEKALEKKP-------KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ--YLKVLLALKLHKM  222 (472)
T ss_dssp             THHHHHHHHHHHHHHHST-------TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH--HHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch--HHHHHHHHHHHHH
Confidence            478999999999999888       677788888877554   5677899999999999999987  8888888776654


Q ss_pred             ----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          178 ----GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       178 ----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                          +++++|+..+++++..+|.++.++..+|.+|...|++++|+..++++++.+|+++.++..++.
T Consensus       223 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  289 (472)
T 4g1t_A          223 REEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGC  289 (472)
T ss_dssp             C------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence                578899999999999999999999999999999999999999999999999999988876654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.41  E-value=1.1e-12  Score=110.73  Aligned_cols=127  Identities=15%  Similarity=0.052  Sum_probs=105.5

Q ss_pred             EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc
Q 026145           98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM  177 (243)
Q Consensus        98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~  177 (243)
                      ...+++++|.+.+++++...|       ....++..+|.++...|++++|+..|+++++.+|++.  .++.++|.+|...
T Consensus       224 ~~~~~~~~a~~~~~~al~~~~-------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~y~~~  294 (472)
T 4g1t_A          224 EEGEEEGEGEKLVEEALEKAP-------GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA--YLHCQIGCCYRAK  294 (472)
T ss_dssp             ------CHHHHHHHHHHHHCS-------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHhCc-------cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChH--HHHHHHHHHHHHH
Confidence            445578899999999988887       7788899999999999999999999999999999977  8888888887543


Q ss_pred             -------------------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 026145          178 -------------------GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRR  233 (243)
Q Consensus       178 -------------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  233 (243)
                                         +.+++|+..+++++.++|.+..++..+|.++...|++++|+..|++++.++|++..
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~  369 (472)
T 4g1t_A          295 VFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA  369 (472)
T ss_dssp             HHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH
Confidence                               34678888888888889988888999999999999999999999999988877654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.40  E-value=9.1e-12  Score=100.49  Aligned_cols=130  Identities=14%  Similarity=0.057  Sum_probs=120.4

Q ss_pred             HhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcC----------HHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145          103 PARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKAN----------FSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus       103 ~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      .++|++.+..++..+|       ....+|+.++.++...+.          +++++.+++.++..+|.+.  .+|+.++.
T Consensus        46 s~eaL~~t~~~L~~nP-------~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny--~aW~hR~w  116 (331)
T 3dss_A           46 DESVLELTSQILGANP-------DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY--GTWHHRCW  116 (331)
T ss_dssp             SHHHHHHHHHHHTTCT-------TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCc-------hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCH--HHHHHHHH
Confidence            3578999999999999       888999999999887765          7899999999999999987  99999999


Q ss_pred             HHHHcCC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          173 ARLTMGN--FSAALEDVREALELAPNYTEAYICQGDVFLAMDQ-YDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       173 ~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ++..+++  +++++..++++++.+|.+..+|..++.++...|. ++++++++.+++..+|+|..+|.++..+
T Consensus       117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~l  188 (331)
T 3dss_A          117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCL  188 (331)
T ss_dssp             HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred             HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            9999994  9999999999999999999999999999999998 6999999999999999999999887654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.40  E-value=5e-12  Score=99.34  Aligned_cols=96  Identities=14%  Similarity=0.027  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHH----hcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHH
Q 026145          130 ALRKRAEAEFE----KANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLT----MGNFSAALEDVREALELAPNYTEAY  201 (243)
Q Consensus       130 ~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~  201 (243)
                      +++.+|.++..    .+++++|+.+|+++++..+  +  .+++++|.++..    .+++++|+.+++++++..|  +.++
T Consensus       148 a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~--~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~  221 (273)
T 1ouv_A          148 GCTILGSLYDAGRGTPKDLKKALASYDKACDLKD--S--PGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGC  221 (273)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--H--HHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--H--HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHH
Confidence            34444444444    4444444444444444321  1  344444444444    4455555555554444433  4444


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHhccCCCc
Q 026145          202 ICQGDVFLA----MDQYDAAEKSYSTCLQIDPSI  231 (243)
Q Consensus       202 ~~la~~~~~----~g~~~~A~~~~~~al~~~p~~  231 (243)
                      +.+|.+|..    .+++++|+.+|++++++.|++
T Consensus       222 ~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~  255 (273)
T 1ouv_A          222 FNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  255 (273)
T ss_dssp             HHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence            445555544    444555555555555444443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.39  E-value=5.1e-13  Score=107.34  Aligned_cols=136  Identities=12%  Similarity=0.058  Sum_probs=112.2

Q ss_pred             eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHhH
Q 026145           95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKDR  170 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~l  170 (243)
                      ..|...|++++|.+.+.+++...+ ...+....+..+..+|.++...|++++|+..|++++.+.+...    ...++.++
T Consensus        44 ~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l  122 (307)
T 2ifu_A           44 VAFKNAKQLEQAKDAYLQEAEAHA-NNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA  122 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            445667899999999988875542 1122334577899999999999999999999999999864321    24788999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 026145          171 CLARLTMGNFSAALEDVREALELAPNY------TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIR  232 (243)
Q Consensus       171 a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  232 (243)
                      |.+|.. |++++|+..|++++.+.|..      ..++.++|.+|..+|++++|+..|++++.+.|++.
T Consensus       123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  189 (307)
T 2ifu_A          123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME  189 (307)
T ss_dssp             HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence            999998 99999999999999987643      57899999999999999999999999999877553

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.38  E-value=1e-12  Score=87.69  Aligned_cols=71  Identities=23%  Similarity=0.324  Sum_probs=40.1

Q ss_pred             CCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 026145          158 KPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS  230 (243)
Q Consensus       158 ~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  230 (243)
                      +|+++  .+++.+|.++..+|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|+
T Consensus         3 ~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            3 DPEDP--FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             --CCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CccCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            34444  555555555555555555555555555555555555555555555555555555555555555443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.38  E-value=4.3e-12  Score=102.88  Aligned_cols=130  Identities=5%  Similarity=-0.066  Sum_probs=110.9

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHh-c-CHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCC
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEK-A-NFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN  179 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~  179 (243)
                      .++++++.++.++..+|       ....+|..++.++... + +++++++.+.++++.+|.+.  .+|..++.+...++.
T Consensus       104 ~l~eEL~~~~~~L~~nP-------Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy--~AW~~R~wvl~~l~~  174 (349)
T 3q7a_A          104 SLEDELRLMNEFAVQNL-------KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNY--HTWAYLHWLYSHFST  174 (349)
T ss_dssp             CHHHHHHHHHHHHHTTC-------CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCH--HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcc
Confidence            58888888888888887       7788888888888887 7 88888888888888888876  888888888888887


Q ss_pred             HH--------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-------HHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          180 FS--------AALEDVREALELAPNYTEAYICQGDVFLAMDQ-------YDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       180 ~~--------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      ++        ++++.++++++.+|.+..+|..++.++..+++       ++++++.+.+++.++|++..+|.+++.
T Consensus       175 ~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~  250 (349)
T 3q7a_A          175 LGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRG  250 (349)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            77        88888888888899888899999888888886       788888888999999998888877654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.37  E-value=8.8e-12  Score=93.12  Aligned_cols=121  Identities=17%  Similarity=0.057  Sum_probs=88.5

Q ss_pred             ecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccC------CCCchHHHHHhHHH
Q 026145           99 HCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELK------PFGGIHVLYKDRCL  172 (243)
Q Consensus        99 ~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~~la~  172 (243)
                      ..|++++|.++++......+       ..+..+..+|.++...|++++|+..|++++.+.      |.  ...++.++|.
T Consensus         4 ~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~l~~   74 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAHPA-------TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA--EHRALHQVGM   74 (203)
T ss_dssp             ---CHHHHHHHHHHHHTSTT-------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHH--HHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHhcCChH-------HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHH--HHHHHHHHHH
Confidence            35678888885544443332       567788888888888888888888888888742      22  3467888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHh---CCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145          173 ARLTMGNFSAALEDVREALEL---APN----YTEAYICQGDVFLAMDQYDAAEKSYSTCLQID  228 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  228 (243)
                      ++..+|++++|+..+++++.+   .++    ...++.++|.++..+|++++|+..+++++.+.
T Consensus        75 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (203)
T 3gw4_A           75 VERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYA  137 (203)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            888888888888888888877   332    24567888888888888888888888888664

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.36  E-value=5.2e-12  Score=86.21  Aligned_cols=100  Identities=15%  Similarity=0.046  Sum_probs=86.2

Q ss_pred             hHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHH
Q 026145          104 ARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAA  183 (243)
Q Consensus       104 ~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A  183 (243)
                      +.+++.+++++...|       ..+..++.+|.++...|++++|+..|++++..+|++.  .+|+++|.++..+|++++|
T Consensus         2 ~~a~~~~~~al~~~p-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A   72 (115)
T 2kat_A            2 QAITERLEAMLAQGT-------DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS--VAWKWLGKTLQGQGDRAGA   72 (115)
T ss_dssp             CCHHHHHHHHHTTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHH
T ss_pred             hHHHHHHHHHHHhCC-------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHHcCCHHHH
Confidence            357888999998888       6788999999999999999999999999999999987  9999999999999999999


Q ss_pred             HHHHHHHHHhCCCc--HHHHHHHHHHHHHcC
Q 026145          184 LEDVREALELAPNY--TEAYICQGDVFLAMD  212 (243)
Q Consensus       184 ~~~~~~al~~~p~~--~~~~~~la~~~~~~g  212 (243)
                      +..|++++++.|..  ..+...+...+..++
T Consensus        73 ~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~  103 (115)
T 2kat_A           73 RQAWESGLAAAQSRGDQQVVKELQVFLRRLA  103 (115)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHHhc
Confidence            99999999998843  445555555554444

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.36  E-value=4.1e-12  Score=103.06  Aligned_cols=131  Identities=8%  Similarity=0.048  Sum_probs=122.4

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc-C-
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKA-NFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM-G-  178 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~-~-  178 (243)
                      ..++|++.++.++..+|       ....+|+.++.++...+ .+++++..+++++..+|++.  .+|+.++.++..+ + 
T Consensus        69 ~se~AL~lt~~~L~~nP-------~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny--~aW~hR~wlL~~l~~~  139 (349)
T 3q7a_A           69 KSERALELTEIIVRMNP-------AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY--QVWHHRLLLLDRISPQ  139 (349)
T ss_dssp             CSHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH--HHHHHHHHHHHHHCCS
T ss_pred             CCHHHHHHHHHHHHhCc-------hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHhcCC
Confidence            45679999999999998       88899999999999999 59999999999999999987  9999999999998 8 


Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH--------HHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          179 NFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYD--------AAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       179 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      +++++++.++++++.+|.+..+|..++.++...|.++        ++++.+.++++.+|.|..+|.++..+
T Consensus       140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~l  210 (349)
T 3q7a_A          140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYL  210 (349)
T ss_dssp             CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999888        99999999999999999999887655

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.36  E-value=4e-12  Score=93.59  Aligned_cols=123  Identities=19%  Similarity=0.032  Sum_probs=100.9

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHH-HHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAE-FEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      |..+...|++++|+..+++++...| .       +..+...+... ...++..+|+..|+++++.+|+++  .+++++|.
T Consensus        47 a~~~~~~g~~~~A~~~~~~a~~~~p-~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~--~~~~~la~  116 (176)
T 2r5s_A           47 ADCLLETKQFELAQELLATIPLEYQ-D-------NSYKSLIAKLELHQQAAESPELKRLEQELAANPDNF--ELACELAV  116 (176)
T ss_dssp             HHHHHHTTCHHHHHHHHTTCCGGGC-C-------HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCH--HHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHhhhccC-C-------hHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCH--HHHHHHHH
Confidence            4556778899999999998876653 1       12223333332 233445568999999999999987  99999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145          173 ARLTMGNFSAALEDVREALELAPNY--TEAYICQGDVFLAMDQYDAAEKSYSTCLQ  226 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~  226 (243)
                      ++...|++++|+..|+++++.+|+.  +.++..+|.++..+|+.++|+..|++++.
T Consensus       117 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          117 QYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            9999999999999999999999976  66999999999999999999999999874

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.35  E-value=4.4e-12  Score=87.66  Aligned_cols=110  Identities=11%  Similarity=0.015  Sum_probs=95.8

Q ss_pred             eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-----hHHHHHh
Q 026145           95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-----IHVLYKD  169 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~~  169 (243)
                      ..+...|++++|...+++++...|       ..+..++.+|.++...|++++|+..|++++...|.+.     ...++++
T Consensus        12 ~~~~~~~~~~~A~~~~~~a~~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A           12 NDAYKKKDFDTALKHYDKAKELDP-------TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHhcCC-------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            344567899999999999998887       6678899999999999999999999999999988751     0389999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 026145          170 RCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMD  212 (243)
Q Consensus       170 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  212 (243)
                      +|.++...|++++|+..++++++..| ++..+..++.+...++
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999 6888888888776554

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.34  E-value=9.8e-12  Score=80.68  Aligned_cols=78  Identities=27%  Similarity=0.409  Sum_probs=74.2

Q ss_pred             HHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          164 HVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       164 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ..+++.+|.++...|++++|+..++++++.+|.++.+++.+|.++...|++++|+..++++++++|+++.++..++.+
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            378999999999999999999999999999999999999999999999999999999999999999999998877664

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.33  E-value=3.2e-11  Score=91.64  Aligned_cols=127  Identities=11%  Similarity=-0.115  Sum_probs=107.7

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHH----hcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHH-
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFE----KANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLT-  176 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~-  176 (243)
                      ++++|.+.|+++...+.         +.+++.+|..+..    .+++++|+.+|+++++..|.+....+++++|.+|.. 
T Consensus        68 ~~~~A~~~~~~A~~~g~---------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g  138 (212)
T 3rjv_A           68 DYPQARQLAEKAVEAGS---------KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASG  138 (212)
T ss_dssp             CHHHHHHHHHHHHHTTC---------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcC
Confidence            89999999999976553         6789999999987    889999999999999998842123899999999999 


Q ss_pred             ---cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          177 ---MGNFSAALEDVREALELAPNYTEAYICQGDVFLAM-D-----QYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       177 ---~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                         .+++++|+.+|+++++. |.++.+++++|.+|... |     ++++|+.+|+++++..  ++.+...+++
T Consensus       139 ~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~~  208 (212)
T 3rjv_A          139 VHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDR  208 (212)
T ss_dssp             SSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence               89999999999999998 77888999999999864 3     8999999999999874  4444444443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.33  E-value=7.6e-12  Score=93.49  Aligned_cols=135  Identities=17%  Similarity=0.131  Sum_probs=110.2

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc---CCCCc--hHHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIEL---KPFGG--IHVLYK  168 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~--~~~~~~  168 (243)
                      |..+...|++++|...+++++.... ........+..+..+|.++...|++++|+..+.+++.+   .++++  ...++.
T Consensus        33 ~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  111 (203)
T 3gw4_A           33 GYVYAFMDRFDEARASFQALQQQAQ-KSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAY  111 (203)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHH
Confidence            4556678899999999999886321 12223467889999999999999999999999999988   34221  347799


Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHhCC--Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 026145          169 DRCLARLTMGNFSAALEDVREALELAP--NY----TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP  229 (243)
Q Consensus       169 ~la~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  229 (243)
                      ++|.++..+|++++|+..+++++.+.+  .+    ..++..+|.++...|++++|+..+++++.+..
T Consensus       112 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          112 EVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999997642  12    34578999999999999999999999998754

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.32  E-value=3.3e-12  Score=105.24  Aligned_cols=135  Identities=16%  Similarity=0.043  Sum_probs=109.5

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHh
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKD  169 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~  169 (243)
                      |..+...|++++|.+.+++++...+ ........+..+..+|.++...|++++|+..|++++.+.|...    ...++.+
T Consensus       194 a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  272 (406)
T 3sf4_A          194 GNTHYLLGNFRDAVIAHEQRLLIAK-EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS  272 (406)
T ss_dssp             HHHHHHHTBHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHH
Confidence            4556677899999999998875543 2222335566889999999999999999999999998866531    1478889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 026145          170 RCLARLTMGNFSAALEDVREALELAPNY------TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP  229 (243)
Q Consensus       170 la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  229 (243)
                      +|.++...|++++|+..+++++.+.+..      ..++..+|.+|...|++++|+..+++++++.+
T Consensus       273 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  338 (406)
T 3sf4_A          273 LGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  338 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999875433      66889999999999999999999999998754

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.32  E-value=1.6e-11  Score=82.69  Aligned_cols=76  Identities=11%  Similarity=0.119  Sum_probs=70.5

Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc------hhhhhhh
Q 026145          165 VLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI------RRSKSFK  238 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~  238 (243)
                      .++..+|.+++..|+|++|+..|+++++++|+++.+++++|.++..+|++++|+..+++++.++|++      ..++..+
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~   84 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRL   84 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999999999999999999999999999998      5555554


Q ss_pred             hh
Q 026145          239 VS  240 (243)
Q Consensus       239 a~  240 (243)
                      +.
T Consensus        85 ~~   86 (111)
T 2l6j_A           85 EL   86 (111)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.31  E-value=7.7e-12  Score=99.95  Aligned_cols=137  Identities=15%  Similarity=0.051  Sum_probs=101.7

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHh
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKD  169 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~  169 (243)
                      +..+...|++++|.+.+++++...+ ........+..+..+|.++...|++++|+..+++++...+...    ...++..
T Consensus       190 ~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  268 (338)
T 3ro2_A          190 GNTHYLLGNFRDAVIAHEQRLLIAK-EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS  268 (338)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence            4455667788888888888775442 1122234556788888888889999999999998887765431    1367888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145          170 RCLARLTMGNFSAALEDVREALELAPNY------TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI  231 (243)
Q Consensus       170 la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  231 (243)
                      +|.++...|++++|+..+++++.+.|..      ..++..+|.++...|++++|...+++++.+.++.
T Consensus       269 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  336 (338)
T 3ro2_A          269 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV  336 (338)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence            8899999999999999999888775432      4578888999999999999999999988887654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.31  E-value=2.3e-11  Score=104.77  Aligned_cols=133  Identities=11%  Similarity=0.076  Sum_probs=101.1

Q ss_pred             cCCHh-------HHHHHHHHHhc-CCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHH
Q 026145          100 CGTPA-------RASEILMVLCG-IKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRC  171 (243)
Q Consensus       100 ~~~~~-------~a~~~l~~~l~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la  171 (243)
                      .|+++       +|.+++++++. ..|       .....|..+|..+...|++++|...|+++++..|.++ ..+|..++
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p-------~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~  363 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLK-------KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP-TLVYIQYM  363 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCS-------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH-HHHHHHHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCc-------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc-hHHHHHHH
Confidence            46765       89999999996 676       6788899999999999999999999999999999863 25788888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          172 LARLTMGNFSAALEDVREALELAPNYTEAYICQGDV-FLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       172 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      .++.+.|++++|...|+++++..|.....+...+.+ +...|++++|...|+++++.+|+++.++..++.
T Consensus       364 ~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~  433 (530)
T 2ooe_A          364 KFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYID  433 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            877777777777777777777666666555555544 335677777777777777777777766655543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.30  E-value=3.6e-12  Score=105.69  Aligned_cols=130  Identities=15%  Similarity=0.099  Sum_probs=112.4

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc------CCCCchHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIEL------KPFGGIHVLY  167 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~  167 (243)
                      |..+...|++++|+..+++++...|   .+....+..++.+|.++...|++++|+..|++++.+      .|.  ...++
T Consensus        55 g~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~  129 (411)
T 4a1s_A           55 GERLCNAGDCRAGVAFFQAAIQAGT---EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG--EAKSS  129 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCC---SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH--HHHHH
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHhcc---cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH--HHHHH
Confidence            4455678899999999999998775   122234578999999999999999999999999988      344  34899


Q ss_pred             HhHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHH
Q 026145          168 KDRCLARLTMGNFSAALEDVREALEL------APNYTEAYICQGDVFLAMDQ-----------------YDAAEKSYSTC  224 (243)
Q Consensus       168 ~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~~a  224 (243)
                      ..+|.++..+|++++|+..+++++.+      .|....++..+|.+|...|+                 +++|+..++++
T Consensus       130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a  209 (411)
T 4a1s_A          130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN  209 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence            99999999999999999999999998      55667899999999999999                 99999999999


Q ss_pred             hccC
Q 026145          225 LQID  228 (243)
Q Consensus       225 l~~~  228 (243)
                      +.+.
T Consensus       210 l~~~  213 (411)
T 4a1s_A          210 LKLM  213 (411)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8875

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.30  E-value=3.9e-12  Score=104.85  Aligned_cols=128  Identities=16%  Similarity=0.165  Sum_probs=107.5

Q ss_pred             HhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHhHHHHHHHcC
Q 026145          103 PARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKDRCLARLTMG  178 (243)
Q Consensus       103 ~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~la~~~~~~~  178 (243)
                      +++|.+.+.+++.... ........+..+..+|.++...|++++|+..|++++.+.|...    ...++.++|.++..+|
T Consensus       163 ~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  241 (406)
T 3sf4_A          163 LQAAVDFYEENLSLVT-ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG  241 (406)
T ss_dssp             HHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence            8888888888765421 1122336677899999999999999999999999998876543    2348999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145          179 NFSAALEDVREALELAPNY------TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI  231 (243)
Q Consensus       179 ~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  231 (243)
                      ++++|+..+++++.+.|..      ..++..+|.++...|++++|+..+++++.+.+..
T Consensus       242 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  300 (406)
T 3sf4_A          242 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL  300 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence            9999999999999887654      6789999999999999999999999999986544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.29  E-value=1.3e-11  Score=82.84  Aligned_cols=83  Identities=13%  Similarity=0.286  Sum_probs=77.4

Q ss_pred             CCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--chhhh
Q 026145          158 KPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS--IRRSK  235 (243)
Q Consensus       158 ~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~  235 (243)
                      +|++.  .++..+|.++...|++++|+..++++++.+|.+..+++.+|.++...|++++|+..++++++++|+  +..++
T Consensus         2 ~p~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   79 (112)
T 2kck_A            2 VDQNP--EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVW   79 (112)
T ss_dssp             CCSST--TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHH
T ss_pred             CCCcH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHH
Confidence            57766  889999999999999999999999999999999999999999999999999999999999999999  98888


Q ss_pred             hhhhhcc
Q 026145          236 SFKVSST  242 (243)
Q Consensus       236 ~~~a~i~  242 (243)
                      ..++.+.
T Consensus        80 ~~l~~~~   86 (112)
T 2kck_A           80 AAKADAL   86 (112)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8777653

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.27  E-value=7.4e-11  Score=101.56  Aligned_cols=130  Identities=11%  Similarity=0.020  Sum_probs=113.4

Q ss_pred             eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHH-HHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLE-ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      ..+...|++++|.++|++++...|       .. ...|...|..+.+.|++++|+..|+++++..|.+.  ..+...+.+
T Consensus       329 ~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~--~~~~~~a~~  399 (530)
T 2ooe_A          329 DYEESRMKYEKVHSIYNRLLAIED-------IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH--HVYVTAALM  399 (530)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHSSS-------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCT--HHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHhCccc-------cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCch--HHHHHHHHH
Confidence            344567899999999999998876       33 35899999999999999999999999999988765  666666655


Q ss_pred             -HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 026145          174 -RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRR  233 (243)
Q Consensus       174 -~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  233 (243)
                       +...|++++|...|+++++.+|+++.+|..++..+...|+.++|...|++++...|.++.
T Consensus       400 ~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~  460 (530)
T 2ooe_A          400 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE  460 (530)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred             HHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence             446999999999999999999999999999999999999999999999999999877664

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.26  E-value=6.2e-12  Score=104.24  Aligned_cols=138  Identities=15%  Similarity=0.032  Sum_probs=113.8

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc------CCCCchHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIEL------KPFGGIHVL  166 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~  166 (243)
                      .|..|...|++++|.+.+++++.... ........+..+..+|.++...|++++|+..|++++..      .|.  ...+
T Consensus        92 lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~  168 (411)
T 4a1s_A           92 LGNAYFYLGDYNKAMQYHKHDLTLAK-SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLS--EGRA  168 (411)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH--HHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHH-HccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHH--HHHH
Confidence            35566778899999999998876521 11223377889999999999999999999999999988      344  3478


Q ss_pred             HHhHHHHHHHcCC-----------------HHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026145          167 YKDRCLARLTMGN-----------------FSAALEDVREALELA------PNYTEAYICQGDVFLAMDQYDAAEKSYST  223 (243)
Q Consensus       167 ~~~la~~~~~~~~-----------------~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~  223 (243)
                      +.++|.++...|+                 +++|+..+++++++.      |....++..+|.++...|++++|+..+++
T Consensus       169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  248 (411)
T 4a1s_A          169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE  248 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            9999999999999                 999999999998764      33456899999999999999999999999


Q ss_pred             HhccCCCchh
Q 026145          224 CLQIDPSIRR  233 (243)
Q Consensus       224 al~~~p~~~~  233 (243)
                      ++.+.|+...
T Consensus       249 al~~~~~~~~  258 (411)
T 4a1s_A          249 RLRIAREFGD  258 (411)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHhcCC
Confidence            9998876544

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.25  E-value=1.7e-10  Score=81.66  Aligned_cols=119  Identities=14%  Similarity=0.067  Sum_probs=101.4

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHH----c
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLT----M  177 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~----~  177 (243)
                      ++++|.+.|+++...+.       ..  +.  +|..+...+..++|+.+|+++.+.  .++  .+++++|.+|..    .
T Consensus        10 d~~~A~~~~~~aa~~g~-------~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~--~a~~~Lg~~y~~G~g~~   74 (138)
T 1klx_A           10 DLKKAIQYYVKACELNE-------MF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSG--NGCRFLGDFYENGKYVK   74 (138)
T ss_dssp             HHHHHHHHHHHHHHTTC-------TT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCH--HHHHHHHHHHHHCSSSC
T ss_pred             CHHHHHHHHHHHHcCCC-------Hh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCH--HHHHHHHHHHHcCCCCC
Confidence            78999999999987664       22  23  899999989999999999999987  444  899999999998    8


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145          178 GNFSAALEDVREALELAPNYTEAYICQGDVFLA----MDQYDAAEKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       178 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~a  239 (243)
                      +++++|+.+|+++.+.  .++.+.+++|.+|..    .+++++|+.+|+++.+..  ++.+...++
T Consensus        75 ~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~  136 (138)
T 1klx_A           75 KDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN  136 (138)
T ss_dssp             CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred             ccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence            9999999999999886  679999999999999    899999999999999874  455554443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.24  E-value=3.6e-11  Score=80.12  Aligned_cols=83  Identities=14%  Similarity=0.078  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNY--TEAYIC  203 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~  203 (243)
                      ..+.+++.+|.++...|++++|+..|+++++++|++.  .+|+++|.++..+|++++|+..|++++++.|..  ......
T Consensus         5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~   82 (100)
T 3ma5_A            5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYV--GTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE   82 (100)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence            5678899999999999999999999999999999987  999999999999999999999999999987643  344444


Q ss_pred             HHHHHHH
Q 026145          204 QGDVFLA  210 (243)
Q Consensus       204 la~~~~~  210 (243)
                      +...+..
T Consensus        83 l~~~l~~   89 (100)
T 3ma5_A           83 LQDAKLK   89 (100)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.24  E-value=9.7e-12  Score=99.37  Aligned_cols=130  Identities=15%  Similarity=0.147  Sum_probs=109.3

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccC------CCCchHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELK------PFGGIHVLY  167 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~  167 (243)
                      |..+...|++++|...+++++...|   .+....+..+..+|.++...|++++|+..+++++...      |.  ...++
T Consensus        12 g~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~   86 (338)
T 3ro2_A           12 GERLCKSGDCRAGVSFFEAAVQVGT---EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG--EAKAS   86 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCC---SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH--HHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhhCc---ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHH--HHHHH
Confidence            3445567899999999999998765   1222346789999999999999999999999998873      33  34789


Q ss_pred             HhHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCC--------------------HHHHHHHH
Q 026145          168 KDRCLARLTMGNFSAALEDVREALELAPNY------TEAYICQGDVFLAMDQ--------------------YDAAEKSY  221 (243)
Q Consensus       168 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~~~~  221 (243)
                      ..+|.++...|++++|+..+++++++.|..      ..++..+|.++...|+                    +++|+..+
T Consensus        87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  166 (338)
T 3ro2_A           87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY  166 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence            999999999999999999999999876533      4489999999999999                    99999999


Q ss_pred             HHHhccC
Q 026145          222 STCLQID  228 (243)
Q Consensus       222 ~~al~~~  228 (243)
                      ++++.+.
T Consensus       167 ~~a~~~~  173 (338)
T 3ro2_A          167 EENLSLV  173 (338)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998763

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.23  E-value=5e-11  Score=85.14  Aligned_cols=105  Identities=19%  Similarity=0.224  Sum_probs=91.4

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---
Q 026145          125 NLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKDRCLARLTMGNFSAALEDVREALELAPNY---  197 (243)
Q Consensus       125 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---  197 (243)
                      ...+..+..+|..+...|++++|+..+.+++...+...    ...++..+|.++...|++++|+..+++++.+.+..   
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   85 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR   85 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence            35677899999999999999999999999998865422    23588999999999999999999999999876532   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 026145          198 ---TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP  229 (243)
Q Consensus       198 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  229 (243)
                         ..++..+|.++...|++++|+..+++++.+.+
T Consensus        86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  120 (164)
T 3ro3_A           86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  120 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence               56899999999999999999999999998743

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.23  E-value=5e-11  Score=84.58  Aligned_cols=98  Identities=9%  Similarity=0.040  Sum_probs=85.1

Q ss_pred             cCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CcHHHHHHHHHHHHHcCCHHH
Q 026145          142 ANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMG---NFSAALEDVREALELA-P-NYTEAYICQGDVFLAMDQYDA  216 (243)
Q Consensus       142 ~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~  216 (243)
                      .....+.+.|.+.+..+|.+.  ++.+++|.++.+.+   +.++++..++.+++.+ | .+.++++++|..++++|+|++
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~--~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~   89 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSK--STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK   89 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHHHHHccCCCcH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence            345667788888888778766  99999999999988   6779999999999998 7 568999999999999999999


Q ss_pred             HHHHHHHHhccCCCchhhhhhhhhc
Q 026145          217 AEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       217 A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      |..+++++++++|++.++......|
T Consensus        90 A~~y~~~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           90 ALKYVRGLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            9999999999999999998776543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.21  E-value=2.2e-10  Score=97.67  Aligned_cols=126  Identities=14%  Similarity=0.010  Sum_probs=101.1

Q ss_pred             CCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhc---CHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHH-
Q 026145          101 GTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKA---NFSEADGFLSQAIELKPFGGIHVLYKDRCLARLT-  176 (243)
Q Consensus       101 ~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~-  176 (243)
                      +++++|...++++...++         +.+++.+|..+...|   ++++|+.+|+++++.  .++  .+++++|.+|.. 
T Consensus       310 ~~~~~A~~~~~~a~~~~~---------~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~--~a~~~Lg~~y~~g  376 (490)
T 2xm6_A          310 KNREQAISWYTKSAEQGD---------ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEK--AAQFNLGNALLQG  376 (490)
T ss_dssp             CCHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCH--HHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCH--HHHHHHHHHHHcC
Confidence            477777777777776554         457788888887755   788888888888876  334  789999999988 


Q ss_pred             ---cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCC---Cchhhhhhhhhc
Q 026145          177 ---MGNFSAALEDVREALELAPNYTEAYICQGDVFLA----MDQYDAAEKSYSTCLQIDP---SIRRSKSFKVSS  241 (243)
Q Consensus       177 ---~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p---~~~~~~~~~a~i  241 (243)
                         .+++++|+.+|+++++.  .++.+++++|.+|..    .+++++|+.+|+++++.+|   +++.+...++.+
T Consensus       377 ~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~  449 (490)
T 2xm6_A          377 KGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL  449 (490)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred             CCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence               88999999999999875  468899999999998    8999999999999999984   477777666554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.20  E-value=1.1e-10  Score=77.12  Aligned_cols=68  Identities=18%  Similarity=0.376  Sum_probs=65.5

Q ss_pred             HhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhh
Q 026145          168 KDRCLARLTMGNFSAALEDVREALELAPNYTE-AYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK  235 (243)
Q Consensus       168 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  235 (243)
                      +.+|.++...|++++|+..++++++.+|+++. +++.+|.++..+|++++|+..|+++++++|+++.++
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            56899999999999999999999999999999 999999999999999999999999999999999877

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.20  E-value=3.1e-10  Score=92.97  Aligned_cols=133  Identities=14%  Similarity=0.076  Sum_probs=107.9

Q ss_pred             EEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHhHHH
Q 026145           97 VGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKDRCL  172 (243)
Q Consensus        97 ~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~la~  172 (243)
                      +...|++++|...+++++...+  .........++..+|..+...|++++|+..+.+++.+.|...    ...++.++|.
T Consensus        24 ~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  101 (373)
T 1hz4_A           24 AINDGNPDEAERLAKLALEELP--PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE  101 (373)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCC--TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            3456799999999999887664  112223456788899999999999999999999998866532    1244788999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145          173 ARLTMGNFSAALEDVREALELA--------PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI  231 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  231 (243)
                      ++...|++++|+..+++++.+.        |....++.++|.++...|++++|...+.+++.+.|..
T Consensus       102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  168 (373)
T 1hz4_A          102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY  168 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999875        3345678889999999999999999999999988753

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.20  E-value=2e-10  Score=97.79  Aligned_cols=131  Identities=8%  Similarity=0.031  Sum_probs=108.4

Q ss_pred             EEecCCHhHHHHHHHHHhcCCC-CCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc-----CCCCc-hHHHHHh
Q 026145           97 VGHCGTPARASEILMVLCGIKS-DHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIEL-----KPFGG-IHVLYKD  169 (243)
Q Consensus        97 ~~~~~~~~~a~~~l~~~l~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~-~~~~~~~  169 (243)
                      +...|++++|..++++++.... --..+++..+..+.++|.+|..+|+|++|+.+|++++++     .|+++ .+..+++
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            3467899999999988774321 123455688999999999999999999999999999976     34443 5688999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh-----CCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145          170 RCLARLTMGNFSAALEDVREALEL-----APNYT---EAYICQGDVFLAMDQYDAAEKSYSTCLQI  227 (243)
Q Consensus       170 la~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~  227 (243)
                      +|.+|..+|+|++|+..+++|+++     .|+++   +....++.++..++++++|...|.++.+-
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999976     45654   56678999999999999999999998653

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.16  E-value=2.9e-10  Score=74.60  Aligned_cols=77  Identities=9%  Similarity=0.046  Sum_probs=65.3

Q ss_pred             CCCCchHHHHHhHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhh
Q 026145          158 KPFGGIHVLYKDRCLARLTMGN---FSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRS  234 (243)
Q Consensus       158 ~p~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  234 (243)
                      +|+++  .++..+|.+++..++   .++|...++++++++|+++.+++.+|..++..|+|++|+..|+++++.+|.++..
T Consensus         2 ~p~~~--~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~   79 (93)
T 3bee_A            2 NAVTA--TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDR   79 (93)
T ss_dssp             CCCCH--HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred             CCCCH--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence            57766  888889998876666   6899999999999999999999999999999999999999999999999885544


Q ss_pred             hh
Q 026145          235 KS  236 (243)
Q Consensus       235 ~~  236 (243)
                      ..
T Consensus        80 ~~   81 (93)
T 3bee_A           80 VT   81 (93)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.13  E-value=4.6e-10  Score=91.97  Aligned_cols=135  Identities=14%  Similarity=0.073  Sum_probs=109.8

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCC-----Cc-hHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPF-----GG-IHVLY  167 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----~~-~~~~~  167 (243)
                      +..+...|++++|...+++++...+ ...........+..+|.++...|++++|+..|++++...+.     ++ ...++
T Consensus        60 ~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  138 (373)
T 1hz4_A           60 GEVLHCKGELTRSLALMQQTEQMAR-QHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLV  138 (373)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHH
Confidence            4455677899999999999886543 11222344566889999999999999999999999987531     11 23678


Q ss_pred             HhHHHHHHHcCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 026145          168 KDRCLARLTMGNFSAALEDVREALELAPN-----YTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP  229 (243)
Q Consensus       168 ~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  229 (243)
                      .++|.++...|++++|+..+++++...|.     ...++..+|.++...|++++|...+++++.+.+
T Consensus       139 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~  205 (373)
T 1hz4_A          139 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG  205 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            88999999999999999999999998875     246788999999999999999999999998743

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.12  E-value=6.8e-10  Score=94.51  Aligned_cols=109  Identities=11%  Similarity=0.045  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhhcc-----CCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhC-----CCc-
Q 026145          130 ALRKRAEAEFEKANFSEADGFLSQAIEL-----KPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELA-----PNY-  197 (243)
Q Consensus       130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~-  197 (243)
                      .....+..+..+|+|++|+..|++++++     .|+++ ....+.++|.+|..+|+|++|+..+++++++.     |++ 
T Consensus       311 ~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp  390 (490)
T 3n71_A          311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA  390 (490)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence            3445566677899999999999999976     34443 56889999999999999999999999999762     444 


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CCCchhhhhhh
Q 026145          198 --TEAYICQGDVFLAMDQYDAAEKSYSTCLQI-----DPSIRRSKSFK  238 (243)
Q Consensus       198 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~  238 (243)
                        ...+.++|.+|..+|++++|+..|++|+++     -|++|.....+
T Consensus       391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~  438 (490)
T 3n71_A          391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLE  438 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence              557999999999999999999999999975     47777665433

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.11  E-value=6.2e-10  Score=93.31  Aligned_cols=102  Identities=13%  Similarity=0.090  Sum_probs=85.4

Q ss_pred             HHhcCHHHHHHHHHHhhcc-----CCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHHHH
Q 026145          139 FEKANFSEADGFLSQAIEL-----KPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALEL-----APNY---TEAYICQ  204 (243)
Q Consensus       139 ~~~~~~~~A~~~~~~al~~-----~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~l  204 (243)
                      ...|+|++|+..|++++++     .|+++ ....+.++|.+|..+|+|++|+..+++++++     .|++   ...++++
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  388 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL  388 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            3467899999999999985     45554 5678999999999999999999999999976     2444   5579999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhcc-----CCCchhhhhhhhh
Q 026145          205 GDVFLAMDQYDAAEKSYSTCLQI-----DPSIRRSKSFKVS  240 (243)
Q Consensus       205 a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~a~  240 (243)
                      |.+|..+|++++|+..|++|+++     -|++|........
T Consensus       389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~  429 (433)
T 3qww_A          389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQE  429 (433)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence            99999999999999999999986     4778777665543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.08  E-value=1e-09  Score=92.78  Aligned_cols=130  Identities=10%  Similarity=0.048  Sum_probs=104.9

Q ss_pred             CeEEEecC---CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHh----cCHHHHHHHHHHhhccCCCCchHHH
Q 026145           94 GVVVGHCG---TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEK----ANFSEADGFLSQAIELKPFGGIHVL  166 (243)
Q Consensus        94 g~~~~~~~---~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~  166 (243)
                      |..|...|   ++++|++.|+++...++       ..+..++.+|..+...    +++++|+.+|+++.   |.++  .+
T Consensus       183 g~~~~~~g~~~~~~~A~~~~~~aa~~g~-------~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~--~a  250 (452)
T 3e4b_A          183 ATVYQKKQQPEQQAELLKQMEAGVSRGT-------VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYP--AS  250 (452)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTTC-------SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGST--HH
T ss_pred             HHHHHHcCCcccHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCH--HH
Confidence            33444566   88899999999988887       5666678889888665    79999999999988   7766  88


Q ss_pred             HHhHHHH-H--HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhccCCCchhhhhhh
Q 026145          167 YKDRCLA-R--LTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMD-----QYDAAEKSYSTCLQIDPSIRRSKSFK  238 (243)
Q Consensus       167 ~~~la~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~~  238 (243)
                      ++++|.+ +  ...+++++|+.+|+++.+.  .++.+++++|.+|. .|     ++++|+.+|+++.   |.++.+...+
T Consensus       251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~L  324 (452)
T 3e4b_A          251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYL  324 (452)
T ss_dssp             HHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHH
Confidence            9999988 4  4688999999999998864  47889999999888 55     8999999999988   7788877776


Q ss_pred             hhc
Q 026145          239 VSS  241 (243)
Q Consensus       239 a~i  241 (243)
                      +.+
T Consensus       325 g~~  327 (452)
T 3e4b_A          325 GQI  327 (452)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.08  E-value=2.9e-09  Score=90.73  Aligned_cols=124  Identities=13%  Similarity=0.020  Sum_probs=84.1

Q ss_pred             cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHhhccCCCCchHHHHHhHHHHH
Q 026145          100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEK-----ANFSEADGFLSQAIELKPFGGIHVLYKDRCLAR  174 (243)
Q Consensus       100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~  174 (243)
                      .+++++|.+.|+++...+.         +.+++.+|..+...     +++++|+.+|+++++..+  +  .+++++|.++
T Consensus       272 ~~d~~~A~~~~~~a~~~~~---------~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~--~--~a~~~lg~~y  338 (490)
T 2xm6_A          272 AKEPLKALEWYRKSAEQGN---------SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD--A--TAQANLGAIY  338 (490)
T ss_dssp             SCCHHHHHHHHHHHHTTTC---------HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC--H--HHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC--H--HHHHHHHHHH
Confidence            3466677777766665443         44666777777666     677777777777776533  2  6677777777


Q ss_pred             HHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          175 LTMG---NFSAALEDVREALELAPNYTEAYICQGDVFLA----MDQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       175 ~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      ...|   ++++|+.+|+++++.  .++.+++++|.+|..    .+++++|+.+|+++++..  ++.++..++.
T Consensus       339 ~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~  407 (490)
T 2xm6_A          339 FRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGE  407 (490)
T ss_dssp             HHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred             HhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHH
Confidence            7655   677777777777765  467778888888777    777888888888877653  4555544443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.07  E-value=2.5e-09  Score=86.84  Aligned_cols=129  Identities=15%  Similarity=0.183  Sum_probs=99.3

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcC-------HHHHHH-HHH--HhhccCCCCchHHHHHhHH
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKAN-------FSEADG-FLS--QAIELKPFGGIHVLYKDRC  171 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-------~~~A~~-~~~--~al~~~p~~~~~~~~~~la  171 (243)
                      +..+|+.+|++++..+|       ..+.++-.++.++.....       ...++. .+.  .++..+|.++  .++..++
T Consensus       214 ~~~~A~~l~e~Al~lDP-------~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a--~~~~ala  284 (372)
T 3ly7_A          214 SLNRASELLGEIVQSSP-------EFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLS--IIYQIKA  284 (372)
T ss_dssp             HHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCH--HHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCH--HHHHHHH
Confidence            45789999999999998       666666666666542111       111111 122  2345678766  8888899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          172 LARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       172 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ..+...|++++|+..+++++.++|+ +.++..+|.++...|++++|++.|.+|+.++|..+ .+.+...+
T Consensus       285 l~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~~~~l  352 (372)
T 3ly7_A          285 VSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYWIENG  352 (372)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHHHHHS
T ss_pred             HHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHHHhCc
Confidence            9999999999999999999999975 67889999999999999999999999999999876 45554444

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.02  E-value=3.5e-09  Score=88.83  Aligned_cols=111  Identities=12%  Similarity=0.009  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhhccC-----CCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhC-----CC
Q 026145          128 ALALRKRAEAEFEKANFSEADGFLSQAIELK-----PFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELA-----PN  196 (243)
Q Consensus       128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~  196 (243)
                      ..........+..+|+|++|+..|++++++.     |+++ ....+.++|.+|..+|+|++|+..+++++.+.     |+
T Consensus       287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~  366 (429)
T 3qwp_A          287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS  366 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence            3344455566778999999999999999763     4443 46789999999999999999999999999762     44


Q ss_pred             c---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CCCchhhhhhh
Q 026145          197 Y---TEAYICQGDVFLAMDQYDAAEKSYSTCLQI-----DPSIRRSKSFK  238 (243)
Q Consensus       197 ~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~  238 (243)
                      +   ...++++|.+|..+|++++|+..+++|+++     -|++|.....+
T Consensus       367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~  416 (429)
T 3qwp_A          367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI  416 (429)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            4   457999999999999999999999999976     47777665543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.99  E-value=8e-09  Score=69.15  Aligned_cols=78  Identities=17%  Similarity=0.112  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCC-----CchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 026145          128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPF-----GGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYI  202 (243)
Q Consensus       128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  202 (243)
                      +...+.+|..++..++|..|+.+|++|+...+.     .....++..+|.+++++|+++.|+..++++++++|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            566789999999999999999999999987421     113588999999999999999999999999999999999888


Q ss_pred             HHH
Q 026145          203 CQG  205 (243)
Q Consensus       203 ~la  205 (243)
                      +++
T Consensus        85 n~~   87 (104)
T 2v5f_A           85 NLK   87 (104)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            876

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.96  E-value=6.7e-09  Score=69.55  Aligned_cols=75  Identities=12%  Similarity=-0.016  Sum_probs=67.6

Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhh
Q 026145          165 VLYKDRCLARLTMGNFSAALEDVREALELA-------PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSF  237 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  237 (243)
                      .-.+.+|..++..++|..|+.+|++|++..       +..+.++..+|.++.++|++++|+..++++++++|+++.+..+
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n   85 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence            567899999999999999999999999863       3467899999999999999999999999999999999888665


Q ss_pred             hh
Q 026145          238 KV  239 (243)
Q Consensus       238 ~a  239 (243)
                      ++
T Consensus        86 ~~   87 (104)
T 2v5f_A           86 LK   87 (104)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.95  E-value=9.2e-09  Score=81.96  Aligned_cols=137  Identities=9%  Similarity=-0.039  Sum_probs=109.0

Q ss_pred             cCCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCC-----CchHHH
Q 026145           92 PDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPF-----GGIHVL  166 (243)
Q Consensus        92 ~~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~  166 (243)
                      ..|..+...|++++|++.+.+.+..++     ......++...+.++.+.|+.+.|.+.+++..+.+|+     +   .+
T Consensus       105 ~la~i~~~~g~~eeAL~~l~~~i~~~~-----~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d---~~  176 (310)
T 3mv2_B          105 LLATAQAILGDLDKSLETCVEGIDNDE-----AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDN---EM  176 (310)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHTSSC-----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHH---HH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHhccCC-----CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccch---HH
Confidence            356677778999999999999987663     1256778888999999999999999999999999982     3   34


Q ss_pred             HHhH--HHHHHHcC--CHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc----------CCC
Q 026145          167 YKDR--CLARLTMG--NFSAALEDVREALELAPNY--TEAYICQGDVFLAMDQYDAAEKSYSTCLQI----------DPS  230 (243)
Q Consensus       167 ~~~l--a~~~~~~~--~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~p~  230 (243)
                      ...+  +.+.+..|  ++.+|...|+++....|++  ...+++   ++..+|++++|...++.+++.          +|+
T Consensus       177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~  253 (310)
T 3mv2_B          177 ILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY  253 (310)
T ss_dssp             HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS
T ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCC
Confidence            4444  44466666  9999999999998888863  334444   899999999999999988887          488


Q ss_pred             chhhhhhhh
Q 026145          231 IRRSKSFKV  239 (243)
Q Consensus       231 ~~~~~~~~a  239 (243)
                      ++.+..++.
T Consensus       254 ~~~~LaN~i  262 (310)
T 3mv2_B          254 KPTFLANQI  262 (310)
T ss_dssp             HHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            888875553

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.95  E-value=3.7e-10  Score=88.83  Aligned_cols=130  Identities=13%  Similarity=0.110  Sum_probs=100.8

Q ss_pred             cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHH---------------------------------------------
Q 026145          100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKR---------------------------------------------  134 (243)
Q Consensus       100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~---------------------------------------------  134 (243)
                      .+++..|.+.|.+++..+|       ..+.+|..+                                             
T Consensus        19 ~~d~~~A~~~F~~a~~~dP-------~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y   91 (282)
T 4f3v_A           19 PMSEARSLDLFTEITNYDE-------SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLY   91 (282)
T ss_dssp             TTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTT
T ss_pred             CCCHHHHHHHHHHHHHhCh-------hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcc
Confidence            5689999999999999988       566666644                                             


Q ss_pred             -----------------HHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 026145          135 -----------------AEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNY  197 (243)
Q Consensus       135 -----------------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  197 (243)
                                       +..+...|+|++|.+.|..++...|.+  . +.+.+|.++++.++|++|+..++++....+..
T Consensus        92 ~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~--~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~  168 (282)
T 4f3v_A           92 GDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEH--L-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF  168 (282)
T ss_dssp             CCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH--H-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH
T ss_pred             cccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCch--H-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc
Confidence                             345667888888888888888888864  2 77888899999999999999998776542221


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CC-chhhhhhhh
Q 026145          198 --TEAYICQGDVFLAMDQYDAAEKSYSTCLQID--PS-IRRSKSFKV  239 (243)
Q Consensus       198 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~~a  239 (243)
                        ..+++.+|.++..+|++++|+.+|++++.-.  |. .+++...++
T Consensus       169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~g  215 (282)
T 4f3v_A          169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLA  215 (282)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHH
Confidence              3589999999999999999999999998644  54 444544443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.95  E-value=5.7e-09  Score=88.20  Aligned_cols=122  Identities=7%  Similarity=0.007  Sum_probs=99.9

Q ss_pred             HhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhc---CHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc--
Q 026145          103 PARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKA---NFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM--  177 (243)
Q Consensus       103 ~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~--  177 (243)
                      .+.+..+++.+....|          .+++.+|..+...|   ++++|+.+|+++.+..|.+.  ..++++|.+|...  
T Consensus       161 ~~~a~~~~~~a~~~~~----------~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a--~~~~~Lg~~y~~g~~  228 (452)
T 3e4b_A          161 LDDVERICKAALNTTD----------ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA--QRVDSVARVLGDATL  228 (452)
T ss_dssp             HHHHHHHHHHHTTTCT----------THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH--HHHHHHHHHHTCGGG
T ss_pred             HHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHhCCCC
Confidence            3444445555554443          28899999999999   99999999999999999865  7779999999766  


Q ss_pred             --CCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-H--HHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          178 --GNFSAALEDVREALELAPNYTEAYICQGDV-F--LAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       178 --~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                        +++++|+.+|+++.   |.++.+++++|.+ +  ...+++++|+.+|+++.+.  .++.+...++.+
T Consensus       229 ~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~  292 (452)
T 3e4b_A          229 GTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKL  292 (452)
T ss_dssp             SSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence              79999999999987   8999999999999 4  5789999999999999864  467777666544

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.92  E-value=1.5e-08  Score=80.78  Aligned_cols=139  Identities=12%  Similarity=-0.029  Sum_probs=105.4

Q ss_pred             eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhc--CHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKA--NFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      ..+...|+++.|.+.+++.....| ...+...........|++.+..|  ++.+|...|+++....|+......+++   
T Consensus       144 qi~L~~~r~d~A~k~l~~~~~~~~-d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---  219 (310)
T 3mv2_B          144 EVALLNNNVSTASTIFDNYTNAIE-DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---  219 (310)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCc-cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---
Confidence            456778899999999988766553 00000122233333354566666  999999999999988886210134444   


Q ss_pred             HHHHcCCHHHHHHHHHHHHHh----------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145          173 ARLTMGNFSAALEDVREALEL----------APNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  239 (243)
                      ++.++|++++|...++.+++.          +|+++.++.++..+...+|+  +|.+.++++.+.+|+++-+..+..
T Consensus       220 ~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~  294 (310)
T 3mv2_B          220 LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQE  294 (310)
T ss_dssp             HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHH
Confidence            899999999999999988776          58899999999999999998  899999999999999998876554

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.90  E-value=1.2e-08  Score=72.34  Aligned_cols=98  Identities=10%  Similarity=-0.007  Sum_probs=80.8

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhc---CHHHHHHHHHHhhccC-CCCchHHHHHhHHHHHHHc
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKA---NFSEADGFLSQAIELK-PFGGIHVLYKDRCLARLTM  177 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~-p~~~~~~~~~~la~~~~~~  177 (243)
                      ....+.+.|.+.+..++       ....+.|+.|+++.+.+   +.++++..++..++.+ |++ ..+.++++|..++++
T Consensus        13 ~l~~~~~~y~~e~~~~~-------~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~-~rd~lY~LAv~~~kl   84 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGS-------VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE-QRDYVFYLAVGNYRL   84 (152)
T ss_dssp             HHHHHHHHHHHHHHTTC-------CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH-HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHccCC-------CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc-hHHHHHHHHHHHHHc
Confidence            34456666666665554       56788999999999988   7779999999999998 733 248999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 026145          178 GNFSAALEDVREALELAPNYTEAYICQGDV  207 (243)
Q Consensus       178 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~  207 (243)
                      ++|++|.++++++|+++|++..+...+..+
T Consensus        85 ~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           85 KEYEKALKYVRGLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            999999999999999999998887765544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.82  E-value=1.8e-08  Score=65.94  Aligned_cols=71  Identities=17%  Similarity=0.153  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHHhcC---HHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 026145          126 LEALALRKRAEAEFEKAN---FSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYT  198 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  198 (243)
                      .++..+..+|.+++..++   .++|...+++++..+|++.  .+++.+|..++..|+|++|+..++++++.+|.++
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~--rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNE--AALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            567889999999986665   7999999999999999988  9999999999999999999999999999999743

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.81  E-value=3.1e-08  Score=67.77  Aligned_cols=99  Identities=9%  Similarity=0.021  Sum_probs=83.0

Q ss_pred             HhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CcHHHHHHHHHHHHHcCCH
Q 026145          140 EKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSA---ALEDVREALELA-P-NYTEAYICQGDVFLAMDQY  214 (243)
Q Consensus       140 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~  214 (243)
                      .......+...|.+.+..++.+.  .+.+++|.++.+..+..+   ++..++..++.+ | ...+.++.+|..++++|+|
T Consensus        13 ~~~~l~~~~~~y~~e~~~~~~s~--~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y   90 (126)
T 1nzn_A           13 SVEDLLKFEKKFQSEKAAGSVSK--STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY   90 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCH--HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CHHHHHHHHHHHHHHhccCCCcH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence            34456667777888777676655  899999999999888776   999999988876 5 4678999999999999999


Q ss_pred             HHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          215 DAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       215 ~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      ++|..++...++++|++.++..+...
T Consensus        91 ~~A~~~~~~lL~~eP~n~QA~~Lk~~  116 (126)
T 1nzn_A           91 EKALKYVRGLLQTEPQNNQAKELERL  116 (126)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            99999999999999999999876654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.79  E-value=3.9e-09  Score=88.01  Aligned_cols=136  Identities=11%  Similarity=0.076  Sum_probs=107.3

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHh
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKD  169 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~  169 (243)
                      |..|...|++++|.+.+..++...+ ..............++.++...|++++|+..+.+++...+...    ...++.+
T Consensus        62 ~~~y~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (434)
T 4b4t_Q           62 GQLYVTMGAKDKLREFIPHSTEYMM-QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIK  140 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTHHHHH-TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHH-HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence            5567788899999999988765432 1112223344566778888889999999999999987643221    3578899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 026145          170 RCLARLTMGNFSAALEDVREALEL------APNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS  230 (243)
Q Consensus       170 la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  230 (243)
                      +|.++...|+|++|+..+++++..      .|....++..++.+|..+|++++|...+++++.+.+.
T Consensus       141 la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  207 (434)
T 4b4t_Q          141 LATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS  207 (434)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999875      2344678999999999999999999999999987543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.77  E-value=1.1e-07  Score=79.68  Aligned_cols=102  Identities=9%  Similarity=0.038  Sum_probs=83.0

Q ss_pred             cCCHhHHHHHHHHHhcCCC-CCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc-----CCCCc-hHHHHHhHHH
Q 026145          100 CGTPARASEILMVLCGIKS-DHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIEL-----KPFGG-IHVLYKDRCL  172 (243)
Q Consensus       100 ~~~~~~a~~~l~~~l~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~-~~~~~~~la~  172 (243)
                      .|++++|..++++++.... .-..+++..+..+.++|.+|..+|+|++|+.+|++++.+     .|+++ .+..++++|.
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            4688999999998874321 134455688899999999999999999999999999976     34443 5688999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHh-----CCCcHHHH
Q 026145          173 ARLTMGNFSAALEDVREALEL-----APNYTEAY  201 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~  201 (243)
                      +|..+|+|++|+..|++|+++     .|+++...
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  424 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS  424 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            999999999999999999976     46666543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.76  E-value=1.2e-07  Score=79.53  Aligned_cols=113  Identities=12%  Similarity=-0.005  Sum_probs=89.6

Q ss_pred             EecCCHhHHHHHHHHHhcCCC-CCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccC-----CCCc-hHHHHHhH
Q 026145           98 GHCGTPARASEILMVLCGIKS-DHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELK-----PFGG-IHVLYKDR  170 (243)
Q Consensus        98 ~~~~~~~~a~~~l~~~l~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~~~-~~~~~~~l  170 (243)
                      ...|++++|.+.+++++.... --.......+..+.++|.+|..+|+|++|+.++++++.+.     |+++ ....++++
T Consensus       298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL  377 (429)
T 3qwp_A          298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV  377 (429)
T ss_dssp             HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence            346689999999999885432 1345566889999999999999999999999999999762     4443 56789999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHh-----CCCcHH---HHHHHHHHHHH
Q 026145          171 CLARLTMGNFSAALEDVREALEL-----APNYTE---AYICQGDVFLA  210 (243)
Q Consensus       171 a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~---~~~~la~~~~~  210 (243)
                      |.+|..+|++++|+..+++|+++     .|+++.   ++.+++.+...
T Consensus       378 a~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e  425 (429)
T 3qwp_A          378 GKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN  425 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            99999999999999999999976     466654   44556655543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.74  E-value=3.7e-08  Score=77.03  Aligned_cols=89  Identities=15%  Similarity=0.137  Sum_probs=79.9

Q ss_pred             CHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc-----CCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHH-cCCHH
Q 026145          143 NFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM-----GNFSAALEDVREALELAPNY-TEAYICQGDVFLA-MDQYD  215 (243)
Q Consensus       143 ~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~  215 (243)
                      ....|...++++++++|+.....+|..+|..|...     |+.++|.+.|+++++++|+. ..+++..|..+.. .|+++
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence            35789999999999999932127999999999995     99999999999999999975 9999999999988 59999


Q ss_pred             HHHHHHHHHhccCCCc
Q 026145          216 AAEKSYSTCLQIDPSI  231 (243)
Q Consensus       216 ~A~~~~~~al~~~p~~  231 (243)
                      +|...++++++.+|..
T Consensus       258 ~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          258 GFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHHcCCCCC
Confidence            9999999999998874

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.69  E-value=3.3e-07  Score=76.22  Aligned_cols=130  Identities=12%  Similarity=0.033  Sum_probs=105.1

Q ss_pred             EecCCHhHHHHHHHHHhcCCCCCcch----------hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----h
Q 026145           98 GHCGTPARASEILMVLCGIKSDHDAA----------KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----I  163 (243)
Q Consensus        98 ~~~~~~~~a~~~l~~~l~~~~~~~~~----------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~  163 (243)
                      ...|++++|++.+..++...+.....          ......++..+|.+|...|++++|++.|.+++...+...    .
T Consensus        15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   94 (434)
T 4b4t_Q           15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTV   94 (434)
T ss_dssp             HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHH
Confidence            45679999999999998776532211          123456789999999999999999999999998766532    1


Q ss_pred             HHHHHhHHHHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145          164 HVLYKDRCLARLTMGNFSAALEDVREALELA------PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQI  227 (243)
Q Consensus       164 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  227 (243)
                      ..+...++.++...|++++|+..+++++...      +....++.++|.+|...|+|++|...+++++..
T Consensus        95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~  164 (434)
T 4b4t_Q           95 KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE  164 (434)
T ss_dssp             HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence            2456678888889999999999999998764      234678999999999999999999999998865

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.61  E-value=1.7e-07  Score=87.34  Aligned_cols=134  Identities=10%  Similarity=0.015  Sum_probs=85.6

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCC-----------
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFG-----------  161 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----------  161 (243)
                      .|..+...|++++|++.|.++            .++..+...|..+.+.|+|++|+++|..+.+..++.           
T Consensus      1111 LAKAql~~G~~kEAIdsYiKA------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYA 1178 (1630)
T 1xi4_A         1111 LAKAQLQKGMVKEAIDSYIKA------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALA 1178 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHhc------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHH
Confidence            455666677788887777653            335567778888888888888888887766554331           


Q ss_pred             ----------------c------------------------hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCC------
Q 026145          162 ----------------G------------------------IHVLYKDRCLARLTMGNFSAALEDVREALELAP------  195 (243)
Q Consensus       162 ----------------~------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------  195 (243)
                                      .                        .+..|..++.++.++|++++|++.++++....+      
T Consensus      1179 Kl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~ 1258 (1630)
T 1xi4_A         1179 KTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCF 1258 (1630)
T ss_pred             hhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHH
Confidence                            0                        012345556666666666666666666533222      


Q ss_pred             -------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhh
Q 026145          196 -------------------NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFK  238 (243)
Q Consensus       196 -------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  238 (243)
                                         .+++.+..++..|...|.+++|+..+++++.++|.+...+..+
T Consensus      1259 acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftEL 1320 (1630)
T 1xi4_A         1259 ACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL 1320 (1630)
T ss_pred             HHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHH
Confidence                               1233444666677788888888888888888887776666443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.59  E-value=2.5e-07  Score=65.06  Aligned_cols=91  Identities=18%  Similarity=0.126  Sum_probs=78.0

Q ss_pred             hcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHH
Q 026145          141 KANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLA----MDQYDA  216 (243)
Q Consensus       141 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~  216 (243)
                      .+++++|+.+|+++.+....    .+.  +|.+|...+.+++|+.+|+++.+.  .++.+++++|.+|..    .+++++
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~----~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~   79 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEM----FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRK   79 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCT----THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             ccCHHHHHHHHHHHHcCCCH----hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHH
Confidence            46899999999999988754    344  999999999999999999999886  679999999999999    899999


Q ss_pred             HHHHHHHHhccCCCchhhhhhhhhc
Q 026145          217 AEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       217 A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      |+.+|+++.+.  .++.+...++.+
T Consensus        80 A~~~~~~Aa~~--g~~~a~~~Lg~~  102 (138)
T 1klx_A           80 AAQYYSKACGL--NDQDGCLILGYK  102 (138)
T ss_dssp             HHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             HHHHHHHHHcC--CCHHHHHHHHHH
Confidence            99999999986  566666665544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.56  E-value=5.9e-07  Score=74.82  Aligned_cols=121  Identities=9%  Similarity=-0.028  Sum_probs=78.2

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      -|..+...|.+++|...|..+               ..|..+|.++.+.|+|++|++.|.++     .++  .+|...+.
T Consensus       128 IGd~~~~~g~yeeA~~~Y~~a---------------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~--~~Wk~v~~  185 (449)
T 1b89_A          128 VGDRCYDEKMYDAAKLLYNNV---------------SNFGRLASTLVHLGEYQAAVDGARKA-----NST--RTWKEVCF  185 (449)
T ss_dssp             ---------CTTTHHHHHHHT---------------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCH--HHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHh---------------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCc--hhHHHHHH
Confidence            355666666777777666643               14666777777777777777777776     233  56666667


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145          173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  239 (243)
                      +....|+|+.|..+... +..+|+   -...+...|.+.|++++|+..+++++.+++.+..++..++
T Consensus       186 aCv~~~ef~lA~~~~l~-L~~~ad---~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~  248 (449)
T 1b89_A          186 ACVDGKEFRLAQMCGLH-IVVHAD---ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELA  248 (449)
T ss_dssp             HHHHTTCHHHHHHTTTT-TTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred             HHHHcCcHHHHHHHHHH-HHhCHh---hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            77777777777655554 223333   3445778899999999999999999999998877776554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.48  E-value=1.5e-06  Score=81.14  Aligned_cols=92  Identities=23%  Similarity=0.170  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC---------
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPN---------  196 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---------  196 (243)
                      .....|+.+|..+...|++++|+..|.++     +++  ..|...+.++.++|+|++|+++|..+++..++         
T Consensus      1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~--say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~Laf 1175 (1630)
T 1xi4_A         1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDP--SSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIF 1175 (1630)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHH
Confidence            34567888888888888888888888775     544  78888888888888888888888777655432         


Q ss_pred             ------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026145          197 ------------------YTEAYICQGDVFLAMDQYDAAEKSYSTC  224 (243)
Q Consensus       197 ------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a  224 (243)
                                        +...+..+|..+...|+|++|..+|.++
T Consensus      1176 aYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A         1176 ALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred             HHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence                              1123445566666666666655555554

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.42  E-value=3e-06  Score=57.93  Aligned_cols=81  Identities=11%  Similarity=0.003  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHHHhcCHHH---HHHHHHHhhccC-CCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSE---ADGFLSQAIELK-PFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAY  201 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~---A~~~~~~al~~~-p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  201 (243)
                      ....+.|+.|+.+.+..+..+   ++.+++..+..+ |.. ..+.++.+|..++++|+|+.|..+++..|+..|++..+.
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~-~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~  111 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE-QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK  111 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcch-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence            456788999999999887777   999999999887 532 358899999999999999999999999999999998887


Q ss_pred             HHHHHH
Q 026145          202 ICQGDV  207 (243)
Q Consensus       202 ~~la~~  207 (243)
                      .....+
T Consensus       112 ~Lk~~i  117 (126)
T 1nzn_A          112 ELERLI  117 (126)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            765544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.32  E-value=9.4e-06  Score=55.65  Aligned_cols=73  Identities=7%  Similarity=0.043  Sum_probs=34.0

Q ss_pred             HHHHhHHHHHHHcCCH---HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhh
Q 026145          165 VLYKDRCLARLTMGNF---SAALEDVREALELAPN-YTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSF  237 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  237 (243)
                      .+.+++|.++.+..+.   ..++..++..++.+|. ..+.++.+|..++++|+|++|..+...+++++|++.++..+
T Consensus        41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L  117 (134)
T 3o48_A           41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  117 (134)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            3444444444444332   2344444444444442 23444455555555555555555555555555555444433

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.32  E-value=1.4e-05  Score=55.56  Aligned_cols=74  Identities=8%  Similarity=0.055  Sum_probs=45.5

Q ss_pred             HHHHhHHHHHHHcCCH---HHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhh
Q 026145          165 VLYKDRCLARLTMGNF---SAALEDVREALELAP-NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFK  238 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~---~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  238 (243)
                      .+.+++|.++.+..+.   .+++..++..++..| ...+.++.+|..++++|+|++|..+....++++|++.++..+.
T Consensus        40 ~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk  117 (144)
T 1y8m_A           40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  117 (144)
T ss_dssp             HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            5566666666655543   346666666666555 3455666666666666666666666666666666666665543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.28  E-value=4.9e-06  Score=67.59  Aligned_cols=111  Identities=14%  Similarity=0.107  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHHhc---CHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCH-------HHHHH-HHH--HHHHh
Q 026145          127 EALALRKRAEAEFEKA---NFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNF-------SAALE-DVR--EALEL  193 (243)
Q Consensus       127 ~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~-------~~A~~-~~~--~al~~  193 (243)
                      .+..++..|..+...+   +..+|+.+|++|++++|+++  .++..++.++.....+       ..++. .++  .++..
T Consensus       195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a--~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~  272 (372)
T 3ly7_A          195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFT--YARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE  272 (372)
T ss_dssp             GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhccc
Confidence            4455677788777654   45899999999999999976  8888778777532211       11111 111  12355


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          194 APNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       194 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      +|.++.++..++..+...|++++|+..+++++.++|+ ..++..+++
T Consensus       273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~  318 (372)
T 3ly7_A          273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGK  318 (372)
T ss_dssp             GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHH
Confidence            6899999999999999999999999999999999975 444444443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.27  E-value=9.5e-06  Score=57.91  Aligned_cols=113  Identities=9%  Similarity=-0.031  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-------hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhC------
Q 026145          128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-------IHVLYKDRCLARLTMGNFSAALEDVREALELA------  194 (243)
Q Consensus       128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------  194 (243)
                      ..+++.....++..+.|+.|+.....++....+++       ...++..+|.+++..++|..|...|+++|...      
T Consensus        20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~   99 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT   99 (167)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            34567777888999999999999998777653332       13578889999999999999999999987542      


Q ss_pred             C-------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          195 P-------------------NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       195 p-------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      |                   .+.+..+.++.||.+++++++|+..++..- ..-..+.+...++++
T Consensus       100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip-~k~Rt~kvnm~LakL  164 (167)
T 3ffl_A          100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP-SRQRTPKINMLLANL  164 (167)
T ss_dssp             -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC-GGGCCHHHHHHHHHH
T ss_pred             CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC-chhcCHHHHHHHHHH
Confidence            1                   112688999999999999999999876431 122455555555554

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.26  E-value=2.2e-07  Score=77.35  Aligned_cols=86  Identities=10%  Similarity=0.176  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 026145          130 ALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFL  209 (243)
Q Consensus       130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  209 (243)
                      +|..+|..++..|+|++|..+|.++          ..|..+|.++.++|+|++|++.++++     +++.+|.....++.
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv  188 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACV  188 (449)
T ss_dssp             -------------CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHH
Confidence            7788888888888888888888865          13677888888888888888888887     36778888888888


Q ss_pred             HcCCHHHHHHHHHHHhccCCCc
Q 026145          210 AMDQYDAAEKSYSTCLQIDPSI  231 (243)
Q Consensus       210 ~~g~~~~A~~~~~~al~~~p~~  231 (243)
                      ..|+++.|.....+ +..+|++
T Consensus       189 ~~~ef~lA~~~~l~-L~~~ad~  209 (449)
T 1b89_A          189 DGKEFRLAQMCGLH-IVVHADE  209 (449)
T ss_dssp             HTTCHHHHHHTTTT-TTTCHHH
T ss_pred             HcCcHHHHHHHHHH-HHhCHhh
Confidence            88888888766654 3356654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.22  E-value=5.8e-06  Score=64.74  Aligned_cols=90  Identities=13%  Similarity=0.011  Sum_probs=78.5

Q ss_pred             CCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHhhccCCCC-chHHHHHhHHHHH
Q 026145          101 GTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEK-----ANFSEADGFLSQAIELKPFG-GIHVLYKDRCLAR  174 (243)
Q Consensus       101 ~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~al~~~p~~-~~~~~~~~la~~~  174 (243)
                      +....+...+++++..+|     ......++..+|..|...     |+.++|.++|++|++++|+. .  ..++.+|..+
T Consensus       177 ~~l~~A~a~lerAleLDP-----~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~i--d~~v~YA~~l  249 (301)
T 3u64_A          177 DTVHAAVMMLERACDLWP-----SYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDP--DHHITYADAL  249 (301)
T ss_dssp             HHHHHHHHHHHHHHHHCT-----THHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCS--HHHHHHHHHT
T ss_pred             HhHHHHHHHHHHHHHhCC-----CcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHH
Confidence            366789999999999998     123677999999999984     99999999999999999975 6  8899999999


Q ss_pred             HH-cCCHHHHHHHHHHHHHhCCCc
Q 026145          175 LT-MGNFSAALEDVREALELAPNY  197 (243)
Q Consensus       175 ~~-~~~~~~A~~~~~~al~~~p~~  197 (243)
                      .. .+++++|.+.+++++...|..
T Consensus       250 ~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          250 CIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             TTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHhcCCHHHHHHHHHHHHcCCCCC
Confidence            88 599999999999999988763

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.18  E-value=1.3e-05  Score=70.90  Aligned_cols=124  Identities=14%  Similarity=0.068  Sum_probs=100.6

Q ss_pred             hHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHH-HHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHH
Q 026145          104 ARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEAD-GFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSA  182 (243)
Q Consensus       104 ~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~  182 (243)
                      +.+..+|++++...|       ..+..|+..+..+...|+.++|. ..|++|+...|.+.  .+|..++......|+++.
T Consensus       326 ~Rv~~~Ye~aL~~~p-------~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~--~Lwl~~a~~ee~~~~~e~  396 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVC-------FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSA--VLAFSLSEQYELNTKIPE  396 (679)
T ss_dssp             HHHHHHHHHHHHHTT-------TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhCCHHH
Confidence            345667888887777       77889999999999999999997 99999999999876  788889999999999999


Q ss_pred             HHHHHHHHHHh-----------CCC-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCchhhhh
Q 026145          183 ALEDVREALEL-----------APN-----------YTEAYICQGDVFLAMDQYDAAEKSYSTCLQI-DPSIRRSKS  236 (243)
Q Consensus       183 A~~~~~~al~~-----------~p~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~  236 (243)
                      |...|++++..           .|.           ...+|...+....+.|..+.|...|.+|++. .+....++.
T Consensus       397 aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi  473 (679)
T 4e6h_A          397 IETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYL  473 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHH
Confidence            99999999875           253           3457888888888888999999999999887 333344443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.12  E-value=1.2e-05  Score=71.15  Aligned_cols=132  Identities=8%  Similarity=-0.014  Sum_probs=100.6

Q ss_pred             cCCHhHHHHHHHHHhcC-CCCCcchhhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc
Q 026145          100 CGTPARASEILMVLCGI-KSDHDAAKNLEALALRKRAEAEFEK-ANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM  177 (243)
Q Consensus       100 ~~~~~~a~~~l~~~l~~-~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~  177 (243)
                      .|..+.|.++|.+++.. .+       .....|...|..-.+. ++++.|...|+.+++..|+++  ..|...+......
T Consensus       447 ~~~l~~AR~vf~~A~~~~~~-------~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~--~~w~~y~~fe~~~  517 (679)
T 4e6h_A          447 IQGLAASRKIFGKCRRLKKL-------VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDG--EYINKYLDFLIYV  517 (679)
T ss_dssp             HHCHHHHHHHHHHHHHTGGG-------SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhcCC-------CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCch--HHHHHHHHHHHhC
Confidence            34678888888888765 21       1233455555554454 458999999999999999876  7777888888888


Q ss_pred             CCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          178 GNFSAALEDVREALELAPN---YTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       178 ~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      |+.+.|...|++++...|+   ....|......-...|+.+.+....+++.+..|+++....+..+
T Consensus       518 ~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~r  583 (679)
T 4e6h_A          518 NEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNK  583 (679)
T ss_dssp             TCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence            9999999999999988773   45677777777788899999999999999999988766555443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.02  E-value=0.00011  Score=50.40  Aligned_cols=83  Identities=11%  Similarity=-0.072  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHHhcC---HHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 026145          126 LEALALRKRAEAEFEKAN---FSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYI  202 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  202 (243)
                      -.+.+.|+.|+.+.+..+   ...++..++..+...|.. ..+.++.+|..++++|+|+.|..+.+.+|+..|++..+..
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~-~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~  116 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  116 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence            346778888999888665   457899999999988855 4689999999999999999999999999999999988877


Q ss_pred             HHHHHHH
Q 026145          203 CQGDVFL  209 (243)
Q Consensus       203 ~la~~~~  209 (243)
                      ....+-.
T Consensus       117 Lk~~Ie~  123 (134)
T 3o48_A          117 LKSMVED  123 (134)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6655433

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.00  E-value=0.00014  Score=50.45  Aligned_cols=81  Identities=11%  Similarity=-0.025  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHHHhcCH---HHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 026145          126 LEALALRKRAEAEFEKANF---SEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYI  202 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~---~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  202 (243)
                      ....+.|+.|+.+.+..+.   .+++.+++..+...|.. ..+.++.+|..++++|+|++|..+.+..|+..|++..+..
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~-~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST-HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc-hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            4567788899999987654   57999999999988865 4688999999999999999999999999999999988776


Q ss_pred             HHHHH
Q 026145          203 CQGDV  207 (243)
Q Consensus       203 ~la~~  207 (243)
                      ....+
T Consensus       116 Lk~~I  120 (144)
T 1y8m_A          116 LKSMV  120 (144)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55444

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.91  E-value=0.00016  Score=50.63  Aligned_cols=109  Identities=10%  Similarity=-0.076  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHHHhcCH------HHHHHHHHHhhccCCCCc------hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHh
Q 026145          126 LEALALRKRAEAEFEKANF------SEADGFLSQAIELKPFGG------IHVLYKDRCLARLTMGNFSAALEDVREALEL  193 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~------~~A~~~~~~al~~~p~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  193 (243)
                      ++...|........+.|+.      +.-++.|++|+..-|...      ....|...|.. ...++.++|.+.|+.++.+
T Consensus        11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~   89 (161)
T 4h7y_A           11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN   89 (161)
T ss_dssp             CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH
Confidence            5567777777777777888      888899999998776432      23556666654 5779999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhh
Q 026145          194 APNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK  235 (243)
Q Consensus       194 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  235 (243)
                      +...+.+|...|.--.++|+...|...+.+++.+.|...+..
T Consensus        90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence            888899999999999999999999999999999999766554

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.73  E-value=0.0005  Score=58.60  Aligned_cols=123  Identities=12%  Similarity=-0.071  Sum_probs=92.9

Q ss_pred             HhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHH-----------
Q 026145          103 PARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRC-----------  171 (243)
Q Consensus       103 ~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la-----------  171 (243)
                      .+.+..+|++++...|       ..+..|+..+..+...|+.+.|...|++|+.. |.+.  ..+...+           
T Consensus       195 ~~Rv~~~ye~al~~~p-------~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~--~l~~~y~~~~e~~~~~~~  264 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFY-------YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM--FLSLYYGLVMDEEAVYGD  264 (493)
T ss_dssp             HHHHHHHHHHHHHHTT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS--HHHHHHHHHTTCTHHHHH
T ss_pred             HHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH--HHHHHHHhhcchhHHHHH
Confidence            4456788999887776       66888999999999999999999999999999 9875  3333222           


Q ss_pred             -----------------------------HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHH
Q 026145          172 -----------------------------LARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMD-QYDAAEKSY  221 (243)
Q Consensus       172 -----------------------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~  221 (243)
                                                   ....+.+..+.|...|+++ ...+.....|...|..-...+ +.+.|...|
T Consensus       265 l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~if  343 (493)
T 2uy1_A          265 LKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIF  343 (493)
T ss_dssp             HHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred             HHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHH
Confidence                                         2222456778888999998 433335567777777766666 599999999


Q ss_pred             HHHhccCCCchhhhh
Q 026145          222 STCLQIDPSIRRSKS  236 (243)
Q Consensus       222 ~~al~~~p~~~~~~~  236 (243)
                      +.+++..|+.+..+.
T Consensus       344 e~al~~~~~~~~~~~  358 (493)
T 2uy1_A          344 SSGLLKHPDSTLLKE  358 (493)
T ss_dssp             HHHHHHCTTCHHHHH
T ss_pred             HHHHHHCCCCHHHHH
Confidence            999998888876543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.47  E-value=0.0031  Score=53.79  Aligned_cols=117  Identities=15%  Similarity=0.047  Sum_probs=95.4

Q ss_pred             CCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc--CCCCchHHHHHhHHHHHHHcC
Q 026145          101 GTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIEL--KPFGGIHVLYKDRCLARLTMG  178 (243)
Q Consensus       101 ~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~la~~~~~~~  178 (243)
                      +..+.|.++|++....+-.      .+...|..+...+.+.|++++|...|++..+.  .|+.   ..|..+-..+.+.|
T Consensus        84 ~~l~~A~~lf~~M~~~G~~------Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~---~tyn~lI~~~~~~g  154 (501)
T 4g26_A           84 PGLSRGFDIFKQMIVDKVV------PNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL---RSYGPALFGFCRKG  154 (501)
T ss_dssp             HHHHHHHHHHHHHHHTTCC------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH---HHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc---ceehHHHHHHHHCC
Confidence            3678899999877654321      23557788888999999999999999987765  4543   67888889999999


Q ss_pred             CHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145          179 NFSAALEDVREALELA--PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQI  227 (243)
Q Consensus       179 ~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  227 (243)
                      ++++|.+.+++..+..  | +...|..+-.++.+.|+.++|.+.+++..+.
T Consensus       155 ~~~~A~~l~~~M~~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          155 DADKAYEVDAHMVESEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             CHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence            9999999999988753  4 5678889999999999999999999987653

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.38  E-value=0.00076  Score=48.12  Aligned_cols=109  Identities=8%  Similarity=-0.008  Sum_probs=76.1

Q ss_pred             EecCCHhHHHHHHHHHhc---CCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccC---CCCc---------
Q 026145           98 GHCGTPARASEILMVLCG---IKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELK---PFGG---------  162 (243)
Q Consensus        98 ~~~~~~~~a~~~l~~~l~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~---------  162 (243)
                      ...+.++.|+-+...++.   .++ ........+..+..+|+.++..++|..|...|++||...   +.+.         
T Consensus        31 ~d~~LY~sA~~La~lLlSl~~~~~-~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~  109 (167)
T 3ffl_A           31 AAAGLHSNVRLLSSLLLTLSNNNP-ELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNS  109 (167)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHST-TSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------------
T ss_pred             HHhhhHHHHHHHHHHHHHhhcCCc-ccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence            344577777766665442   222 112344677789999999999999999999999987542   1110         


Q ss_pred             -----------hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 026145          163 -----------IHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVF  208 (243)
Q Consensus       163 -----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  208 (243)
                                 -.++.+.++.|+..++++++|+..++.+- ..-..+.....||..|
T Consensus       110 ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip-~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          110 ASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP-SRQRTPKINMLLANLY  165 (167)
T ss_dssp             -------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred             CCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC-chhcCHHHHHHHHHHh
Confidence                       12678899999999999999999987642 2224577777777765

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.34  E-value=0.0018  Score=57.64  Aligned_cols=115  Identities=15%  Similarity=0.107  Sum_probs=81.8

Q ss_pred             HhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHH---HhcCHHHHHHHHHHhhcc--------CCCCc--------h
Q 026145          103 PARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEF---EKANFSEADGFLSQAIEL--------KPFGG--------I  163 (243)
Q Consensus       103 ~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~A~~~~~~al~~--------~p~~~--------~  163 (243)
                      .+.+.++++++....|       .. ..++..+.+..   ...+--+|+....++++.        .+.+.        .
T Consensus       265 ~~~a~~~le~L~~~~p-------~~-~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~  336 (754)
T 4gns_B          265 VDFTIDYLKGLTKKDP-------IH-DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCM  336 (754)
T ss_dssp             HHHHHHHHHHHHHHCG-------GG-HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCC-------ch-hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcc
Confidence            4667888888776664       21 12222222221   123455677777777642        22221        1


Q ss_pred             HHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 026145          164 HVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCL  225 (243)
Q Consensus       164 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  225 (243)
                      ...+...+..+...|+|+-|+...++|+...|.....|+.|+.+|..+|+|+.|+-.++.+-
T Consensus       337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            23555667778889999999999999999999999999999999999999999999888773

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.21  E-value=0.013  Score=49.76  Aligned_cols=124  Identities=9%  Similarity=-0.065  Sum_probs=91.5

Q ss_pred             EEecCCHhHHHHHHHHHhcCCCCCcchh---------------------------------hHHHHHHHHHHHHHHHhcC
Q 026145           97 VGHCGTPARASEILMVLCGIKSDHDAAK---------------------------------NLEALALRKRAEAEFEKAN  143 (243)
Q Consensus        97 ~~~~~~~~~a~~~l~~~l~~~~~~~~~~---------------------------------~~~~~~~~~~a~~~~~~~~  143 (243)
                      +...|+++.|.+++++++.. |....-.                                 ......|...+....+.++
T Consensus       223 ~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~  301 (493)
T 2uy1_A          223 LIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRG  301 (493)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCC
Confidence            34567889999999998877 6321100                                 0111234444555556788


Q ss_pred             HHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026145          144 FSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMG-NFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYS  222 (243)
Q Consensus       144 ~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  222 (243)
                      .+.|...|.+| . .|.. ...+|...|..-+..+ +.+.|...|+.+++..|+.+..+...+......|+.+.|...|.
T Consensus       302 ~~~AR~i~~~A-~-~~~~-~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~e  378 (493)
T 2uy1_A          302 LELFRKLFIEL-G-NEGV-GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFK  378 (493)
T ss_dssp             HHHHHHHHHHH-T-TSCC-CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHh-h-CCCC-ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999 3 3432 2367777777776666 69999999999999999999888888888889999999999988


Q ss_pred             HH
Q 026145          223 TC  224 (243)
Q Consensus       223 ~a  224 (243)
                      ++
T Consensus       379 r~  380 (493)
T 2uy1_A          379 RL  380 (493)
T ss_dssp             HS
T ss_pred             HH
Confidence            87

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.08  E-value=0.021  Score=46.97  Aligned_cols=94  Identities=14%  Similarity=0.080  Sum_probs=75.4

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHhhccCCCCch--------------------HHHHHhHHHHHHHcCCHHHHHHHHHHHHH
Q 026145          133 KRAEAEFEKANFSEADGFLSQAIELKPFGGI--------------------HVLYKDRCLARLTMGNFSAALEDVREALE  192 (243)
Q Consensus       133 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~  192 (243)
                      ..|......++.+.|.+.+.+|+.+.....+                    ..+...++..+...|++.+|+..++.++.
T Consensus       120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~  199 (388)
T 2ff4_A          120 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF  199 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3444445578899999999999887522110                    12344567778899999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145          193 LAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ  226 (243)
Q Consensus       193 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  226 (243)
                      .+|-+-.++..+-.+|...|+..+|++.|+++-.
T Consensus       200 ~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          200 EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988644

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.99  E-value=0.016  Score=40.65  Aligned_cols=105  Identities=12%  Similarity=-0.043  Sum_probs=79.5

Q ss_pred             hHHHHHHHHHhcCCCCCcchh--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHH
Q 026145          104 ARASEILMVLCGIKSDHDAAK--NLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFS  181 (243)
Q Consensus       104 ~~a~~~l~~~l~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~  181 (243)
                      ++..+.|++++..-| +....  ...+..|...|.. ...++.++|...|+.++.....  ++.+|...|..-.+.|+..
T Consensus        36 ~rlrd~YerAia~~P-p~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKk--FAKiwi~~AqFEiRqgnl~  111 (161)
T 4h7y_A           36 NKLIGRYSQAIEALP-PDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKK--FAFVHISFAQFELSQGNVK  111 (161)
T ss_dssp             HHHHHHHHHHHHHSC-GGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTT--BHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHcCC-ccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHcccHH
Confidence            788899999887665 43322  2455566666644 5669999999999999998555  4699999999999999999


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 026145          182 AALEDVREALELAPNYTEAYICQGDVFLAMDQ  213 (243)
Q Consensus       182 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  213 (243)
                      .|...+.+++.+.|.... .+..+..-.+.|+
T Consensus       112 kARkILg~AiG~~~k~~~-~le~a~~nl~~~~  142 (161)
T 4h7y_A          112 KSKQLLQKAVERGAVPLE-MLEIALRNLNLQK  142 (161)
T ss_dssp             HHHHHHHHHHHTTCBCHH-HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhccCCCcHH-HHHHHHHhhhcCC
Confidence            999999999999986544 4444444445543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.91  E-value=0.024  Score=48.31  Aligned_cols=122  Identities=11%  Similarity=-0.026  Sum_probs=91.6

Q ss_pred             EEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHH---------hcCHHHHHHHHHHhhcc--CCCCchHH
Q 026145           97 VGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFE---------KANFSEADGFLSQAIEL--KPFGGIHV  165 (243)
Q Consensus        97 ~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~---------~~~~~~A~~~~~~al~~--~p~~~~~~  165 (243)
                      +.+.|+.++|.++|++....+-.      .+...|..+-..+..         .++.+.|.+.|++....  .|+.   .
T Consensus        36 c~k~G~~~~A~~lf~~M~~~Gv~------pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~---~  106 (501)
T 4g26_A           36 CSKKGDVLEALRLYDEARRNGVQ------LSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE---A  106 (501)
T ss_dssp             TTTSCCHHHHHHHHHHHHHHTCC------CCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH---H
T ss_pred             HHhCCCHHHHHHHHHHHHHcCCC------CCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH---H
Confidence            34678999999999887644321      123344444444443         23478999999887654  3543   6


Q ss_pred             HHHhHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145          166 LYKDRCLARLTMGNFSAALEDVREALELA-PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQI  227 (243)
Q Consensus       166 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  227 (243)
                      .|..+-..+.+.|++++|++.+++..+.. +-+...|..+-..|.+.|+.++|.+.|.+..+.
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~  169 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES  169 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            88889999999999999999999987653 226778888889999999999999999998764

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.80  E-value=0.012  Score=50.02  Aligned_cols=81  Identities=12%  Similarity=0.144  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 026145          128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDV  207 (243)
Q Consensus       128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  207 (243)
                      ...+..+|........+..|..+|.+|+.+.|+++  ..|+.+|.+....++.-+|+-+|.+++......+.+..++...
T Consensus       152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G--~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~  229 (497)
T 1ya0_A          152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG--QPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA  229 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS--HHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCC--chHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence            34677889999999999999999999999999998  9999999999999999999999999998776678888888777


Q ss_pred             HHH
Q 026145          208 FLA  210 (243)
Q Consensus       208 ~~~  210 (243)
                      +.+
T Consensus       230 f~~  232 (497)
T 1ya0_A          230 LSK  232 (497)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.60  E-value=0.029  Score=43.33  Aligned_cols=95  Identities=15%  Similarity=0.196  Sum_probs=75.6

Q ss_pred             HHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH---------------
Q 026145          136 EAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEA---------------  200 (243)
Q Consensus       136 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---------------  200 (243)
                      ..+++.|+.++|++.....++.+|.|.  .....+-..+.-.|+|+.|...++.+.+++|.....               
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da--~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~   82 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDA--SLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK   82 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHH
Confidence            346788999999999999999999987  888889999999999999999999999998854321               


Q ss_pred             --------------------HHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 026145          201 --------------------YICQGDVFLAMDQYDAAEKSYSTCLQIDPSIR  232 (243)
Q Consensus       201 --------------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  232 (243)
                                          ....+......|+.++|.+.-.++++.-|..+
T Consensus        83 ~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~  134 (273)
T 1zbp_A           83 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  134 (273)
T ss_dssp             HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence                                22223444467888888888888887766543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.48  E-value=0.02  Score=48.64  Aligned_cols=75  Identities=11%  Similarity=-0.061  Sum_probs=65.6

Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145          165 VLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  239 (243)
                      ..+..+|.+......++.|..+|.+|+.+.|++..++..+|.+....|+.-+|+-+|.+++....-.+.+..++.
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~  227 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQ  227 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHH
Confidence            355677888888888999999999999999999999999999999999999999999999988766777665554

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.27  E-value=0.017  Score=44.58  Aligned_cols=64  Identities=17%  Similarity=0.237  Sum_probs=58.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhh
Q 026145          173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKS  236 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  236 (243)
                      .+++.|+.++|++.....++.+|.+......+...+.-.|+++.|...++-+.+++|+....-.
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~   69 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS   69 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHH
Confidence            4568899999999999999999999999999999999999999999999999999998765543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.03  E-value=0.026  Score=50.35  Aligned_cols=60  Identities=12%  Similarity=0.084  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHH
Q 026145          129 LALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREA  190 (243)
Q Consensus       129 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  190 (243)
                      ..+...+.-+..+|+|+-|+...++|+...|.+-  ..|+.|+.+|..+|+|+.|+-.+..+
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF--~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSF--ESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH--HHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhh--HHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3566667788899999999999999999999987  99999999999999999999887755

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.84  E-value=0.31  Score=35.20  Aligned_cols=45  Identities=13%  Similarity=0.109  Sum_probs=33.8

Q ss_pred             ecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Q 026145           99 HCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAI  155 (243)
Q Consensus        99 ~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  155 (243)
                      ..|+++.|.++.+..            .....|..+|......|+++-|...|.++-
T Consensus        17 ~lg~l~~A~e~a~~l------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           17 EYGNLDAALDEAKKL------------NDSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HTTCHHHHHHHHHHH------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             hcCCHHHHHHHHHHh------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            356777777776543            224578899999999999999999988764

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.69  E-value=0.37  Score=34.60  Aligned_cols=100  Identities=11%  Similarity=0.012  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHH--hC------------
Q 026145          129 LALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALE--LA------------  194 (243)
Q Consensus       129 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~------------  194 (243)
                      +....++..++-.|+|..|+-.+.+     -+.  ....+.-+.||..+++|..|+..++..+.  .+            
T Consensus        34 eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT--~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~f  106 (242)
T 3kae_A           34 EYRMLMSIVLYLNGEYTRALFHLHK-----LNT--CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEM  106 (242)
T ss_dssp             CTHHHHHHHHHHTTCHHHHHHHHHT-----CCB--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTT
T ss_pred             HHHhhhhhhhhhcchHhHHHHHHHh-----cch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccee
Confidence            3445667888899999999877643     222  25566678999999999999999999993  22            


Q ss_pred             ---CCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhh
Q 026145          195 ---PNYTE-AYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK  235 (243)
Q Consensus       195 ---p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  235 (243)
                         |.+-+ .+..+|.++...|+.+||+.++......+|-.+.+.
T Consensus       107 fvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE  151 (242)
T 3kae_A          107 FVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE  151 (242)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             eeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence               33434 455679999999999999999999988887655443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.64  E-value=0.18  Score=41.40  Aligned_cols=95  Identities=12%  Similarity=0.021  Sum_probs=74.9

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHhhccC--CCCc--hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhC---CCcH----HH
Q 026145          132 RKRAEAEFEKANFSEADGFLSQAIELK--PFGG--IHVLYKDRCLARLTMGNFSAALEDVREALELA---PNYT----EA  200 (243)
Q Consensus       132 ~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~----~~  200 (243)
                      ..+|..|+..|+|.+|.+.+.+.+..-  .++.  +-+++..-..+|..++++..+...+.++....   +.+|    ..
T Consensus       103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i  182 (394)
T 3txn_A          103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL  182 (394)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence            378999999999999999998887631  1111  45778888999999999999999999987653   1223    34


Q ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHhc
Q 026145          201 YICQGDVFL-AMDQYDAAEKSYSTCLQ  226 (243)
Q Consensus       201 ~~~la~~~~-~~g~~~~A~~~~~~al~  226 (243)
                      ...-|..+. ..++|.+|...|-+++.
T Consensus       183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          183 DLQSGILHAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence            556688888 89999999999998874

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=95.37  E-value=0.37  Score=44.50  Aligned_cols=98  Identities=13%  Similarity=-0.006  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhc-----cCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhC--CCcH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIE-----LKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELA--PNYT  198 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~  198 (243)
                      .....+..+-..+.+.|+.++|...|.+..+     ..|+-   ..|+.+-..+.+.|++++|.+.|++..+..  | +.
T Consensus       125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pdv---vTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-Dv  200 (1134)
T 3spa_A          125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTL---DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DL  200 (1134)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CH
T ss_pred             hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCH---hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cH
Confidence            4455688888899999999999999976432     35653   688889999999999999999999987643  5 56


Q ss_pred             HHHHHHHHHHHHcCC-HHHHHHHHHHHhcc
Q 026145          199 EAYICQGDVFLAMDQ-YDAAEKSYSTCLQI  227 (243)
Q Consensus       199 ~~~~~la~~~~~~g~-~~~A~~~~~~al~~  227 (243)
                      ..|..+-.++.+.|+ .++|.+.+++....
T Consensus       201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          201 LSYAAALQCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence            778888888999997 57888888887653

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.99  E-value=0.13  Score=42.87  Aligned_cols=101  Identities=13%  Similarity=-0.026  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhC--CCcH----HH
Q 026145          128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELA--PNYT----EA  200 (243)
Q Consensus       128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~----~~  200 (243)
                      ..++..+|..+.+.|+++.|.+.|.++...-.... ..+.+.....+++..++|..+...+.++....  ..++    ..
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l  210 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY  210 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence            34677899999999999999999999876532221 45788888889999999999999999987652  2222    23


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145          201 YICQGDVFLAMDQYDAAEKSYSTCLQID  228 (243)
Q Consensus       201 ~~~la~~~~~~g~~~~A~~~~~~al~~~  228 (243)
                      ....|..+...++|.+|...|..++.-.
T Consensus       211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          211 KTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence            4455777888999999999998876543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.58  E-value=0.18  Score=41.41  Aligned_cols=61  Identities=23%  Similarity=0.116  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHH
Q 026145          130 ALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALE  192 (243)
Q Consensus       130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  192 (243)
                      +...++..+...|++.+|+..+..++..+|-+-  .++..+-.++...|+..+|++.|+++-+
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E--~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEHPYRE--PLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344567778889999999999999999999876  7899999999999999999999988654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.38  E-value=0.32  Score=43.36  Aligned_cols=47  Identities=19%  Similarity=0.198  Sum_probs=30.3

Q ss_pred             HHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHH
Q 026145          137 AEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREA  190 (243)
Q Consensus       137 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  190 (243)
                      .....|++++|.+..+.     .++.  ..|..+|..+.+.++++.|+..|.++
T Consensus       661 ~~l~~~~~~~A~~~~~~-----~~~~--~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          661 LALKVGQLTLARDLLTD-----ESAE--MKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHTCHHHHHHHHTT-----CCCH--HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhhcCCHHHHHHHHHh-----hCcH--hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            34556777777766432     1223  66777777777777777777777664

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.97  E-value=1.8  Score=36.10  Aligned_cols=101  Identities=18%  Similarity=0.133  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhhc-cCCCC---chHHHHHhHHHHHHHcCCHHHHHHHHHHHHH---hCCCcH-
Q 026145          127 EALALRKRAEAEFEKANFSEADGFLSQAIE-LKPFG---GIHVLYKDRCLARLTMGNFSAALEDVREALE---LAPNYT-  198 (243)
Q Consensus       127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~-  198 (243)
                      .+.....++..+...|++.+|...+..... .....   ...+++......++..++|..|...+.++..   ..+..+ 
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~  215 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES  215 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence            566678899999999999999999888653 21111   1246788889999999999999999998742   223333 


Q ss_pred             ---HHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145          199 ---EAYICQGDVFLAMDQYDAAEKSYSTCLQI  227 (243)
Q Consensus       199 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~  227 (243)
                         ..+...|..+...++|.+|...|..++..
T Consensus       216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence               35667899999999999999999988764

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.83  E-value=0.3  Score=41.48  Aligned_cols=105  Identities=14%  Similarity=0.022  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHH--------------HHHHHhhc-cCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEAD--------------GFLSQAIE-LKPFGGIHVLYKDRCLARLTMGNFSAALEDVREA  190 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~--------------~~~~~al~-~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  190 (243)
                      ..+..||.....+...|+.....              ..+..|.- .+++ ..+..++.+-..|+..+.|++|.....++
T Consensus       179 l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~-~qa~l~nllLRnYL~~~~y~qA~~lvsk~  257 (523)
T 4b4t_S          179 INAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNE-TKAMLINLILRDFLNNGEVDSASDFISKL  257 (523)
T ss_dssp             ------------------------CHHHHHHHHTHHHHHHHHCCSCSSSC-HHHHHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcc-hhHHHHHHHHHHHHccCcHHHHHHHHhcC
Confidence            45556776666665566554321              22333322 2332 24577888899999999999999999988


Q ss_pred             HHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 026145          191 LELAPNY-------TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRR  233 (243)
Q Consensus       191 l~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  233 (243)
                      .  .|..       ...++.+|.++..+++|.+|.+.+..|+...|.+..
T Consensus       258 ~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~  305 (523)
T 4b4t_S          258 E--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK  305 (523)
T ss_dssp             C--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred             c--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence            4  5532       345777899999999999999999999998886543

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=93.70  E-value=0.4  Score=41.89  Aligned_cols=119  Identities=14%  Similarity=0.008  Sum_probs=74.4

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHH
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFS  181 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~  181 (243)
                      +++.|...+........ .  ........+..+|..+...+...++...+.+.....+++.   ..-.++...++.++++
T Consensus       229 d~~~A~~~~~~~~~~~~-~--~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~e~~~r~Alr~~d~~  302 (618)
T 1qsa_A          229 DAENARLMIPSLAQAQQ-L--NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS---LIERRVRMALGTGDRR  302 (618)
T ss_dssp             CHHHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH---HHHHHHHHHHHHTCHH
T ss_pred             CHHHHHHHHHhhhhccC-C--CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChH---HHHHHHHHHHHCCCHH
Confidence            66677777765432211 1  1112222333344444445545677777777665444432   2222333345679999


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145          182 AALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ  226 (243)
Q Consensus       182 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  226 (243)
                      .|...+++.-...+..+...|.+|.++..+|+.++|...|+++..
T Consensus       303 ~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          303 GLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            999999765443334577899999999999999999999999875

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=92.64  E-value=0.96  Score=40.23  Aligned_cols=27  Identities=22%  Similarity=0.297  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHh
Q 026145          128 ALALRKRAEAEFEKANFSEADGFLSQA  154 (243)
Q Consensus       128 ~~~~~~~a~~~~~~~~~~~A~~~~~~a  154 (243)
                      ...|..+|..+.+.++++.|+..|.++
T Consensus       681 ~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          681 EMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            456788888888889999998888876

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.27  E-value=0.68  Score=43.57  Aligned_cols=94  Identities=13%  Similarity=-0.039  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhhccC-C--------------------CCchHHHHHhHHHHHHHcCCHHHHHHHHH
Q 026145          130 ALRKRAEAEFEKANFSEADGFLSQAIELK-P--------------------FGGIHVLYKDRCLARLTMGNFSAALEDVR  188 (243)
Q Consensus       130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p--------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~  188 (243)
                      ..|.+|.++...|++++|..+|.++-..- .                    .+.....|......+.+.+.++.+++..+
T Consensus       844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~  923 (1139)
T 4fhn_B          844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL  923 (1139)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            45889999999999999999999884211 0                    01123456677778888999999999999


Q ss_pred             HHHHhCCC-cH----HHHHHHHHHHHHcCCHHHHHHHHHH
Q 026145          189 EALELAPN-YT----EAYICQGDVFLAMDQYDAAEKSYST  223 (243)
Q Consensus       189 ~al~~~p~-~~----~~~~~la~~~~~~g~~~~A~~~~~~  223 (243)
                      .|++..+. +.    ..|.++-..+..+|+|++|...+..
T Consensus       924 lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          924 LADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             HHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             HHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            99987643 32    2577788889999999999877754

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.79  E-value=2.3  Score=36.15  Aligned_cols=126  Identities=18%  Similarity=0.237  Sum_probs=70.3

Q ss_pred             EEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-----hHHHHHhHH
Q 026145           97 VGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-----IHVLYKDRC  171 (243)
Q Consensus        97 ~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~~la  171 (243)
                      |...+.++.|..++.+..  .|+........+..++..|.++.-+++|.+|.+++..|+...|.+.     ...++..+-
T Consensus       241 YL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI  318 (523)
T 4b4t_S          241 FLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHC  318 (523)
T ss_dssp             HHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHH
T ss_pred             HHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHH
Confidence            344456777777777664  2222223344567777888888888888888888888888766542     112333344


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCc
Q 026145          172 LARLTMGNFSAALEDVREALELAPNY---TEAYICQGDVFLAMDQ---YDAAEKSYSTCLQIDPSI  231 (243)
Q Consensus       172 ~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~  231 (243)
                      .+-+-+|+..+-      .+-..|..   ...|+.++.++ +.|+   ++++++.++..+.-+...
T Consensus       319 ~V~LLlG~iP~r------~lf~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~~~F~~Dgty  377 (523)
T 4b4t_S          319 CIQLLMGDIPEL------SFFHQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYKQLLLKDDTY  377 (523)
T ss_dssp             HHHHHHTCCCCH------HHHTTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTHHHHHHTTCT
T ss_pred             hHHhhcCCCCCh------HHhhchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhcceeccCChh
Confidence            444456665431      11112222   23466666665 3454   444555555555555443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=91.56  E-value=1.3  Score=36.39  Aligned_cols=100  Identities=15%  Similarity=-0.035  Sum_probs=74.1

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccC---CCCc--hHHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELK---PFGG--IHVLYK  168 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~--~~~~~~  168 (243)
                      +..|...|++.+|.+++.+....-. ...++......+......+...+++.++...|.++....   +.++  .+....
T Consensus       106 ~~l~~~~~~y~~a~~~i~~l~~~~~-~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~  184 (394)
T 3txn_A          106 IALYFDTALYTEALALGAQLLRELK-KLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDL  184 (394)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHT-TSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHH
Confidence            3456678899999998887764321 112245677778888899999999999999999987553   1122  345566


Q ss_pred             hHHHHHH-HcCCHHHHHHHHHHHHHhC
Q 026145          169 DRCLARL-TMGNFSAALEDVREALELA  194 (243)
Q Consensus       169 ~la~~~~-~~~~~~~A~~~~~~al~~~  194 (243)
                      .-|..++ ..++|..|...|-++++..
T Consensus       185 ~~Gi~~l~~~rdyk~A~~~F~eaf~~f  211 (394)
T 3txn_A          185 QSGILHAADERDFKTAFSYFYEAFEGF  211 (394)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence            6789999 8999999999999887644

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=91.25  E-value=3.1  Score=29.93  Aligned_cols=85  Identities=12%  Similarity=-0.050  Sum_probs=63.4

Q ss_pred             ecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhc--c--C-------------CCC
Q 026145           99 HCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIE--L--K-------------PFG  161 (243)
Q Consensus        99 ~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~--~-------------p~~  161 (243)
                      ..|.+..+.-++.   ..         +...+.+-...++.+..+|..|+...++.+.  .  +             |.+
T Consensus        45 yngEY~R~Lf~L~---~l---------NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~D  112 (242)
T 3kae_A           45 LNGEYTRALFHLH---KL---------NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGD  112 (242)
T ss_dssp             HTTCHHHHHHHHH---TC---------CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTC
T ss_pred             hcchHhHHHHHHH---hc---------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccch
Confidence            3457777665543   22         3456677788899999999999999999983  2  2             222


Q ss_pred             chHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 026145          162 GIHVLYKDRCLARLTMGNFSAALEDVREALELAPN  196 (243)
Q Consensus       162 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  196 (243)
                      . .-.+..+|....+.|+-++|+.++.......|-
T Consensus       113 k-EfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l  146 (242)
T 3kae_A          113 E-EFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL  146 (242)
T ss_dssp             H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             H-HHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence            1 245667899999999999999999998887763

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=90.14  E-value=2.7  Score=30.25  Aligned_cols=81  Identities=10%  Similarity=-0.044  Sum_probs=55.8

Q ss_pred             HHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHH-----
Q 026145          137 AEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELA--------PNYTEAYIC-----  203 (243)
Q Consensus       137 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~-----  203 (243)
                      ...+.|+++.|.+..++.     ++.  ..|..+|...+..|+++-|..+|+++-...        ..+.+-+..     
T Consensus        14 LAL~lg~l~~A~e~a~~l-----~~~--~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA   86 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL-----NDS--ITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIA   86 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH-----CCH--HHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHh-----CCH--HHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            336789999999987764     333  789999999999999999999998753221        111121112     


Q ss_pred             --------HHHHHHHcCCHHHHHHHHHHH
Q 026145          204 --------QGDVFLAMDQYDAAEKSYSTC  224 (243)
Q Consensus       204 --------la~~~~~~g~~~~A~~~~~~a  224 (243)
                              ...++..+|+++++++.|.+.
T Consensus        87 ~~~g~~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           87 QTREDFGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHTTCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHCccHHHHHHHHHHcCCHHHHHHHHHHC
Confidence                    234556778888888777654

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.98  E-value=3.3  Score=34.50  Aligned_cols=98  Identities=13%  Similarity=0.069  Sum_probs=72.2

Q ss_pred             eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhc---cCCCCc--hHHHHHh
Q 026145           95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIE---LKPFGG--IHVLYKD  169 (243)
Q Consensus        95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~p~~~--~~~~~~~  169 (243)
                      ..|...|++.+|.+++........ ...+.......+......+...++|..|...+.++..   ..+.++  ....+..
T Consensus       145 ~i~e~~g~~~eA~~iL~~l~~Et~-~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~  223 (445)
T 4b4t_P          145 EIKKEEGKIDEAADILCELQVETY-GSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNL  223 (445)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHC-SSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHH
Confidence            455677899999999987653221 2233446677888889999999999999999998742   122221  2356777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh
Q 026145          170 RCLARLTMGNFSAALEDVREALEL  193 (243)
Q Consensus       170 la~~~~~~~~~~~A~~~~~~al~~  193 (243)
                      .|..+...++|.+|-.+|..++..
T Consensus       224 ~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          224 LVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhc
Confidence            899999999999999999888753

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=89.21  E-value=0.85  Score=27.55  Aligned_cols=37  Identities=11%  Similarity=0.158  Sum_probs=24.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145          203 CQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       203 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  239 (243)
                      .+|..+...|++++|..+|-+|+...|+-.+....++
T Consensus        22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q   58 (73)
T 3ax2_A           22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQ   58 (73)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4666677777777777777777777766655554443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.00  E-value=0.95  Score=37.59  Aligned_cols=99  Identities=12%  Similarity=-0.035  Sum_probs=73.2

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCC--Cc--hHHHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPF--GG--IHVLYK  168 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~--~~~~~~  168 (243)
                      .|..|...|+++.|.+.+.+......    ........++....++...++|..+...+.++-.....  ++  ......
T Consensus       137 la~~~~~~Gd~~~A~~~~~~~~~~~~----~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          137 LGEYYAQIGDKDNAEKTLGKSLSKAI----STGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             HHHHHHHHCCCTTHHHHHHHHHHHHT----CCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            35667788999999999988764321    11256677888888999999999999999998655221  11  223455


Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 026145          169 DRCLARLTMGNFSAALEDVREALELAP  195 (243)
Q Consensus       169 ~la~~~~~~~~~~~A~~~~~~al~~~p  195 (243)
                      ..|..+...++|.+|...|-.++....
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhccCC
Confidence            568888899999999999988876543

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=88.65  E-value=2.5  Score=29.21  Aligned_cols=60  Identities=12%  Similarity=0.040  Sum_probs=45.4

Q ss_pred             HHhHHHH-HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145          167 YKDRCLA-RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ  226 (243)
Q Consensus       167 ~~~la~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  226 (243)
                      |..+|.- +...|+-++-...+...+..++-++..++.+|.+|.+.|+..+|.+.+.+|-+
T Consensus        93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~  153 (172)
T 1wy6_A           93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK  153 (172)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            4445443 35667777767777766666777899999999999999999999999998875

>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*

Probab=85.89  E-value=4.4  Score=25.33  Aligned_cols=35  Identities=31%  Similarity=0.371  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCC
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPF  160 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  160 (243)
                      ..++.+...|..+++.++|.+|..+|+++.....+
T Consensus        51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten   85 (106)
T 2vkj_A           51 KKARSLIAEGKDLFETANYGEALVFFEKALNLSDN   85 (106)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccccC
Confidence            55666777777788888888888888887755433

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=84.61  E-value=1.4  Score=27.37  Aligned_cols=32  Identities=25%  Similarity=0.046  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIEL  157 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  157 (243)
                      ..+..+...|...-+.|+|++|+.+|.++++.
T Consensus        17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~   48 (83)
T 2w2u_A           17 EMARKYAINAVKADKEGNAEEAITNYKKAIEV   48 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            44555666777777888888888888777654

>1o8r_A Guanylin; prohormone, GAP-I, precursor, prosequence; NMR {Homo sapiens} SCOP: d.234.1.1

Probab=83.45  E-value=0.72  Score=28.99  Aligned_cols=64  Identities=23%  Similarity=0.369  Sum_probs=42.1

Q ss_pred             CCCcccccccccccceeecCCCCcccccccccccccCCCcEEEEccCC--------ccCccCHHHHHHHHHhc
Q 026145            2 EGGFGLAFNSVLPVARLRLPSNDKSFCFPLPRARINAELKELRVCTNR--------TCRRQGSMQILETLSSL   66 (243)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vC~~~--------~c~~~G~~~~~~~l~~~   66 (243)
                      +|+|-.++.|+.-|+.+.+......-. ..+..+.........||.++        .|...|+..++++|+..
T Consensus         5 dg~fsf~LESVKkLk~L~e~~~~~~~~-~~~~~~~~~~~~~p~vC~~P~lP~el~PvC~~~~A~~il~RL~~I   76 (94)
T 1o8r_A            5 DGNFSFSLESVKKLKDLQEPQEPRVGK-LRNFAPIPGEPVVPILCSNPNFPEELKPLCKEPNAQEILQRLEEI   76 (94)
T ss_dssp             SSSSEECSHHHHTTTTCCSSCCCCCSS-CTTCCCCSCCCCCCSSCSSTTSCGGGHHHHTSTTHHHHHHHHHHH
T ss_pred             ECCEEeeHHHHHHHHHHhccCCCcccc-ccccccccCCCCCCcccCCCCCcHHHhhhccCcCHHHHHHHHHHh
Confidence            688999999988887764443322211 11111222233344589888        89999999999999984

>3rof_A Low molecular weight protein-tyrosine-phosphatase; phosphatase, hydrolase; 1.03A {Staphylococcus aureus}

Probab=83.29  E-value=1.2  Score=31.43  Aligned_cols=39  Identities=21%  Similarity=0.233  Sum_probs=31.1

Q ss_pred             cEEEEccCCccCccCHHHHHHHHHh-cCCCcEEEEeeCCC
Q 026145           41 KELRVCTNRTCRRQGSMQILETLSS-LAPPEVAVKSCGCL   79 (243)
Q Consensus        41 ~~i~vC~~~~c~~~G~~~~~~~l~~-~g~~~v~v~~~gc~   79 (243)
                      +.++||++..|++.=++.++..+-. .|++.+.+..+|-.
T Consensus         8 ~vLFVC~gN~cRSpmAE~i~~~~~~~~gl~~~~v~SAGt~   47 (158)
T 3rof_A            8 DVAFVCLGNICRSPMAEAIMRQRLKDRNIHDIKVHSRGTG   47 (158)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHHHHTTCCSEEEEEEETT
T ss_pred             EEEEEeCCchhHHHHHHHHHHHHHHHcCCCCeEEEecccC
Confidence            5789999999999988888877654 67766888777754

>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1

Probab=81.20  E-value=1.6  Score=27.80  Aligned_cols=27  Identities=11%  Similarity=0.283  Sum_probs=14.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 026145          169 DRCLARLTMGNFSAALEDVREALELAP  195 (243)
Q Consensus       169 ~la~~~~~~~~~~~A~~~~~~al~~~p  195 (243)
                      .+|..+...|+++.|+.+|-+|+...|
T Consensus        25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~   51 (95)
T 1om2_A           25 QLGEELLAQGDYEKGVDHLTNAIAVCG   51 (95)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence            345555555555555555555555544

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=80.83  E-value=14  Score=34.36  Aligned_cols=88  Identities=11%  Similarity=-0.065  Sum_probs=68.5

Q ss_pred             EEEecCCHhHHHHHHHHHhc-----CCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc--CCCCchHHHHH
Q 026145           96 VVGHCGTPARASEILMVLCG-----IKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIEL--KPFGGIHVLYK  168 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~-----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~  168 (243)
                      .|.+.|+.++|.++|.....     ..        .+...|..+-..+.+.|+.++|.+.|++..+.  .|+-   ..|+
T Consensus       136 glcK~G~leeA~~Lf~eM~~m~~kG~~--------PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDv---vTYn  204 (1134)
T 3spa_A          136 CCLLTDQLPLAHHLLVVHHGQRQKRKL--------LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL---LSYA  204 (1134)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHSHHHHTT--------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH---HHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHhhcCCC--------CCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH---HHHH
Confidence            34667899999999965432     22        24567888889999999999999999998765  4653   5788


Q ss_pred             hHHHHHHHcCC-HHHHHHHHHHHHHhC
Q 026145          169 DRCLARLTMGN-FSAALEDVREALELA  194 (243)
Q Consensus       169 ~la~~~~~~~~-~~~A~~~~~~al~~~  194 (243)
                      .+-.++.+.|+ .++|.+.+++.....
T Consensus       205 tLI~glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          205 AALQCMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence            88888889888 578899999887754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	243
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	6e-13
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-08
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	7e-09
d1m2da_	101	c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin	4e-08
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	7e-08
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-05
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	8e-07
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	3e-05
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	1e-06
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-06
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	4e-04
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	4e-06
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	6e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	7e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	8e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.003
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.003
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	2e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	9e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	8e-04
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	9e-05
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	0.002
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	0.003

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.4 bits (153), Expect = 6e-13
 Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 2/103 (1%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED 186
            A  L+++    F    + EA     +AI   P   + V Y +R L  L M     AL D
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALAD 60

Query: 187 VREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
            R ALEL     +A+   G   L M+ YD A  +      +  
Sbjct: 61  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.9 bits (154), Expect = 2e-12
 Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 2/104 (1%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
             A    A A  EK + +EA+   + A+ L P     +            GN   A+   
Sbjct: 271 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ--GNIEEAVRLY 328

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI 231
           R+ALE+ P +  A+     V     +   A   Y   ++I P+ 
Sbjct: 329 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 9e-09
 Identities = 8/54 (14%), Positives = 20/54 (37%)

Query: 178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI 231
           G+F AA     +     P+ T   +    +     + D +    +  ++ +P +
Sbjct: 13  GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL 66

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 4e-08
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 134 RAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALEL 193
            A  + E+ N  EA     +A+E+ P       + +        G    AL   +EA+ +
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFP--EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368

Query: 194 APNYTEAYICQGDVFLAM 211
           +P + +AY   G+    M
Sbjct: 369 SPTFADAYSNMGNTLKEM 386

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 5e-08
 Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 2/84 (2%)

Query: 131 LRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREA 190
             + A  E++  +F  A+    Q    +P      +                +      A
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLA 59

Query: 191 LELAPNYTEAYICQGDVFLAMDQY 214
           ++  P   EAY   G+V+    Q 
Sbjct: 60  IKQNPLLAEAYSNLGNVYKERGQL 83

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 6e-08
 Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 2/104 (1%)

Query: 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187
           A+A          +     A     +A+ L P       Y +          F  A+   
Sbjct: 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP--NFLDAYINLGNVLKEARIFDRAVAAY 226

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI 231
             AL L+PN+   +     V+      D A  +Y   +++ P  
Sbjct: 227 LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 270

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 8e-08
 Identities = 27/136 (19%), Positives = 44/136 (32%), Gaps = 9/136 (6%)

Query: 94  GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQ 153
           G V    G    A         +  +          A         E   F  A     +
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVTLDPNF-------LDAYINLGNVLKEARIFDRAVAAYLR 228

Query: 154 AIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQ 213
           A+ L P     V++ +        G    A++  R A+EL P++ +AY    +       
Sbjct: 229 ALSLSPN--HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS 286

Query: 214 YDAAEKSYSTCLQIDP 229
              AE  Y+T L++ P
Sbjct: 287 VAEAEDCYNTALRLCP 302

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 7e-09
 Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED 186
           +AL  ++     ++K +F  A     +A EL P         ++       G+++   E 
Sbjct: 3   QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT--NMTYITNQAAVYFEKGDYNKCREL 60

Query: 187 VREALELAPNYTEAYIC-------QGDVFLAMDQYDAAEKSYSTCLQIDPS 230
             +A+E+     E Y          G+ +   ++Y  A   Y+  L    +
Sbjct: 61  CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111

>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioredoxin-like 2Fe-2S ferredoxin
domain: Thioredoxin-like 2Fe-2S ferredoxin
species: Aquifex aeolicus [TaxId: 63363]

 Score = 47.7 bits (113), Expect = 4e-08
 Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 15/85 (17%)

Query: 40  LKELRVCTNRT--------CRRQGSMQILETL------SSLAPPEVAVKSCGCLGRCGAG 85
            K + VC            C ++GS ++ +                 +   GC+     G
Sbjct: 1   FKHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMG 60

Query: 86  PNLVALPDGVVVGHCGTPARASEIL 110
           P +V  PDGV  G    P    EI+
Sbjct: 61  PVVVVYPDGVWYGQV-KPEDVDEIV 84

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 49.7 bits (118), Expect = 7e-08
 Identities = 10/55 (18%), Positives = 24/55 (43%)

Query: 175 LTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           L+ G    ALE + EA++ +P          ++      ++ A++     +++ P
Sbjct: 7   LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 41.6 bits (97), Expect = 3e-05
 Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 2/90 (2%)

Query: 134 RAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALEL 193
           + +    +    +A   L +AI+  P      L           G+F  A E + ++++L
Sbjct: 2   QWKNALSEGQLQQALELLIEAIKASP--KDASLRSSFIELLCIDGDFERADEQLMQSIKL 59

Query: 194 APNYTEAYICQGDVFLAMDQYDAAEKSYST 223
            P Y         +  A        +  +T
Sbjct: 60  FPEYLPGASQLRHLVKAAQARKDFAQGAAT 89

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.9 bits (110), Expect = 8e-07
 Identities = 12/124 (9%), Positives = 30/124 (24%), Gaps = 7/124 (5%)

Query: 111 MVLCGIKSDHDAAKNLEALALRKRAEAEF-----EKANFSEADGFLSQAIELKPFGGIHV 165
            +L  +    D+             E E            ++  F  + +  +       
Sbjct: 186 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRC 245

Query: 166 LYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCL 225
                    L   +   + ++++E            I        +       + +ST  
Sbjct: 246 ELSVEKSTVL--QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK 303

Query: 226 QIDP 229
            +DP
Sbjct: 304 AVDP 307

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.9 bits (97), Expect = 3e-05
 Identities = 5/89 (5%), Positives = 22/89 (24%), Gaps = 1/89 (1%)

Query: 138 EFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNY 197
              + N++      ++ +E          Y+    A+      +  L      +    + 
Sbjct: 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA-AVAPAEELAFTDSLITRNFSN 177

Query: 198 TEAYICQGDVFLAMDQYDAAEKSYSTCLQ 226
             ++  +  +   +     +         
Sbjct: 178 YSSWHYRSCLLPQLHPQPDSGPQGRLPEN 206

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 1e-06
 Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 2/104 (1%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED 186
            A  L+ +A   F+  ++  A  F SQAIEL P   I+  Y +R LA L    +  AL D
Sbjct: 9   RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY--YGNRSLAYLRTECYGYALGD 66

Query: 187 VREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
              A+EL   Y + Y  +    +A+ ++ AA + Y T +++ P 
Sbjct: 67  ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 110

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 3e-06
 Identities = 10/104 (9%), Positives = 24/104 (23%), Gaps = 4/104 (3%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED 186
             +   +      ++ + S      S +                          S A   
Sbjct: 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC----QHCLVHLGDIARYRNQTSQAESY 174

Query: 187 VREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
            R A +L P+  + Y     +  +   +      Y   + +   
Sbjct: 175 YRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 13/102 (12%), Positives = 25/102 (24%), Gaps = 1/102 (0%)

Query: 129 LALRKRAEAEFEKANFSEADGFLSQAIELKP-FGGIHVLYKDRCLARLTMGNFSAALEDV 187
            AL K+ E +     F      L    + +       V            G ++  L+++
Sbjct: 50  YALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQEL 109

Query: 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
                +           G +        A  K  S+      
Sbjct: 110 CTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC 151

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 4e-04
 Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 183 ALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           + + +R+A  L  + T++ +   +V+ +          Y   L  D 
Sbjct: 5   SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDL 48

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 43.8 bits (102), Expect = 4e-06
 Identities = 11/53 (20%), Positives = 21/53 (39%)

Query: 167 YKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEK 219
              R  A+L M  F +A  D  + LE+ P    A +          +++  ++
Sbjct: 101 LYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDR 153

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 37.2 bits (85), Expect = 6e-04
 Identities = 15/117 (12%), Positives = 47/117 (40%), Gaps = 13/117 (11%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-------------IHVLYKDRCLA 173
           +A  ++++    F+   + +A     + +                    +   + +  + 
Sbjct: 14  QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 73

Query: 174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
            L +  ++ A+E   +AL L     +    +G+  L M+++++A+  +   L+++P 
Sbjct: 74  YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 130

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 7e-06
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 137 AEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPN 196
           A ++K    E +          P       ++   L RL  G+   A+     A++  P 
Sbjct: 2   ATYDKGYQFEEE---------NPLRDHPQPFE-EGLRRLQEGDLPNAVLLFEAAVQQDPK 51

Query: 197 YTEAYICQGDVFLAMDQYDAAEKSYSTCLQ 226
           + EA+   G      +Q   A  +   CL+
Sbjct: 52  HMEAWQYLGTTQAENEQELLAISALRRCLE 81

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 8e-04
 Identities = 9/66 (13%), Positives = 18/66 (27%), Gaps = 11/66 (16%)

Query: 167 YKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQ-----------GDVFLAMDQYD 215
             +  ++ + +G    A+E   EAL +                            + Q D
Sbjct: 243 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 302

Query: 216 AAEKSY 221
           A   + 
Sbjct: 303 AYGAAD 308

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 13/69 (18%), Positives = 24/69 (34%)

Query: 164 HVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYST 223
           ++L+               A+   R ALEL P Y  +    G   + +  +  A + +  
Sbjct: 206 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLE 265

Query: 224 CLQIDPSIR 232
            L +    R
Sbjct: 266 ALNMQRKSR 274

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 14/98 (14%), Positives = 30/98 (30%), Gaps = 2/98 (2%)

Query: 133 KRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALE 192
           +      ++ +   A      A++  P       ++     +        A+  +R  LE
Sbjct: 24  EEGLRRLQEGDLPNAVLLFEAAVQQDP--KHMEAWQYLGTTQAENEQELLAISALRRCLE 81

Query: 193 LAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
           L P+   A +     F        A +     L+  P+
Sbjct: 82  LKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA 119

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 1e-05
 Identities = 18/104 (17%), Positives = 47/104 (45%), Gaps = 2/104 (1%)

Query: 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED 186
           +   L+++        N  +A    S+AI+L P   +    +         G++  A ED
Sbjct: 2   QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAA--YAKKGDYQKAYED 59

Query: 187 VREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
             + ++L P++ + Y  +      +++++ A+++Y   L+ + +
Sbjct: 60  GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 103

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (98), Expect = 2e-05
 Identities = 10/93 (10%), Positives = 25/93 (26%)

Query: 137 AEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPN 196
           AE +       +       +         + +                 D  +   LA +
Sbjct: 148 AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH 207

Query: 197 YTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
            +E     G  +L++   D+A   +   +  + 
Sbjct: 208 LSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 40.7 bits (93), Expect = 9e-05
 Identities = 12/65 (18%), Positives = 18/65 (27%), Gaps = 5/65 (7%)

Query: 170 RCLARLTMGNFSAALEDVREALELAPN-----YTEAYICQGDVFLAMDQYDAAEKSYSTC 224
           R    +  GN   A    + ALE  P         A    G+V     +   +       
Sbjct: 18  RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 77

Query: 225 LQIDP 229
            Q+  
Sbjct: 78  EQMAR 82

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 37.6 bits (85), Expect = 8e-04
 Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 9/115 (7%)

Query: 124 KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKP---FGGIHVLYKDRCLARLTMGNF 180
             + A     RA+      N  EA+     A+E  P   F    V            G  
Sbjct: 8   DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGEL 67

Query: 181 SAALEDVREALELA------PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
           + +L  +++  ++A           + I Q ++  A      A ++     Q+  
Sbjct: 68  TRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN 122

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.7 bits (91), Expect = 9e-05
 Identities = 11/52 (21%), Positives = 19/52 (36%)

Query: 170 RCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSY 221
           R      +  +  AL D+++A E+AP           V   +      EK+ 
Sbjct: 117 RAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAA 168

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 7/91 (7%), Positives = 24/91 (26%), Gaps = 13/91 (14%)

Query: 154 AIELKP-----FGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVF 208
            I         +     + +              A +  R+A+EL       +  +  + 
Sbjct: 35  QIIYSDKFRDVYDYFRAVLQR-------DERSERAFKLTRDAIELNAANYTVWHFRRVLL 87

Query: 209 LAMDQ-YDAAEKSYSTCLQIDPSIRRSKSFK 238
            ++ +         +  ++  P   +    +
Sbjct: 88  KSLQKDLHEEMNYITAIIEEQPKNYQVWHHR 118

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 177 MGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEK 219
           + +F  A  D ++ L+L PN   A          + +  A EK
Sbjct: 109 VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 151

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	243
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.85
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.8
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.78
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.78
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.77
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.76
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.76
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.75
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.74
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.73
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.73
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.73
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.71
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.71
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.71
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.68
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.66
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.65
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.64
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.63
d1m2da_	101	Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolic	99.61
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.57
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.56
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.55
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.55
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.55
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.53
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.53
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.51
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.49
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.41
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.4
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.38
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.33
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.31
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.31
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.27
d2fug21	178	NADH-quinone oxidoreductase chain 2, NQO2 {Thermus	99.26
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.16
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.08
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.05
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.05
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.01
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.01
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.99
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.91
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.83
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.74
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.61
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.53
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.36
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.16
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.68
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	92.17
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	88.93
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	85.28
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	82.74
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	82.03
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	81.58
d1om2a_	95	Mitochondrial import receptor subunit Tom20 {Rat (	80.04

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3e-21  Score=132.00  Aligned_cols=112  Identities=21%  Similarity=0.379  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 026145          128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDV  207 (243)
Q Consensus       128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  207 (243)
                      +..+...|+.++..|+|++|+..|+++|..+|+++  .+|.++|.++..+|++++|+..++++++++|+++.+|+++|.+
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~   80 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH--VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA   80 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch--hhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHH
Confidence            44577899999999999999999999999999987  9999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          208 FLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       208 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      +..+|++++|+..|+++++++|+++.++..++++
T Consensus        81 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          81 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999887765

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.1e-20  Score=134.66  Aligned_cols=118  Identities=28%  Similarity=0.420  Sum_probs=110.4

Q ss_pred             chhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 026145          122 AAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAY  201 (243)
Q Consensus       122 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  201 (243)
                      ......+..+...|+.+++.|+|++|+..|+++++++|++.  .+|.++|.++..+|++++|+..|+++++++|+++.+|
T Consensus         4 ~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~   81 (159)
T d1a17a_           4 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA--IYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGY   81 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhh--hhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHH
Confidence            34446778899999999999999999999999999999987  9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          202 ICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       202 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ..+|.++..+|++++|+..+++++.++|+++.++..+.++
T Consensus        82 ~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~  121 (159)
T d1a17a_          82 YRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  121 (159)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999987766543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=1.1e-19  Score=135.29  Aligned_cols=105  Identities=29%  Similarity=0.391  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 026145          128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDV  207 (243)
Q Consensus       128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  207 (243)
                      +..+...|+.+++.|+|++|+..|++++.++|.++  .+|.++|.+|..+|+|++|+..|+++++++|+++.+|+++|.+
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~--~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~   81 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA--VYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence            56788999999999999999999999999999987  9999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHhccCCCchhh
Q 026145          208 FLAMDQYDAAEKSYSTCLQIDPSIRRS  234 (243)
Q Consensus       208 ~~~~g~~~~A~~~~~~al~~~p~~~~~  234 (243)
                      |..+|++++|+..|++++.++|++...
T Consensus        82 ~~~l~~~~~A~~~~~~al~l~p~~~~~  108 (201)
T d2c2la1          82 QLEMESYDEAIANLQRAYSLAKEQRLN  108 (201)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccHHH
Confidence            999999999999999999999876544

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=3.8e-18  Score=131.57  Aligned_cols=131  Identities=19%  Similarity=0.135  Sum_probs=118.3

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHH
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFS  181 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~  181 (243)
                      ..+.++..+++++...+   ......+..++.+|.++...|++++|+..|++++.++|+++  .+|+++|.++..+|+++
T Consensus        14 ~~e~al~~~~e~l~~~~---~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~--~a~~~lg~~~~~~g~~~   88 (259)
T d1xnfa_          14 QQEVILARMEQILASRA---LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP--EVFNYLGIYLTQAGNFD   88 (259)
T ss_dssp             HHHHHHHHHHHHHTSSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhhh---cCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH--HHHhhhchHHHHHHHHH
Confidence            56777777888775442   23346788999999999999999999999999999999987  99999999999999999


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhh
Q 026145          182 AALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSF  237 (243)
Q Consensus       182 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  237 (243)
                      +|+..|+++++++|+++.+++++|.++..+|++++|+..++++++++|++......
T Consensus        89 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  144 (259)
T d1xnfa_          89 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLW  144 (259)
T ss_dssp             HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHH
Confidence            99999999999999999999999999999999999999999999999998776543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4e-18  Score=123.91  Aligned_cols=116  Identities=19%  Similarity=0.312  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-------------hHHHHHhHHHHHHHcCCHHHHHHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-------------IHVLYKDRCLARLTMGNFSAALEDVREALE  192 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~  192 (243)
                      ..+..+...|+.++..|+|++|+..|.+++...|...             ...++.++|.+|+++|+|++|+..++++|.
T Consensus        11 ~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~   90 (170)
T d1p5qa1          11 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE   90 (170)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh
Confidence            4567788999999999999999999999999877542             135678999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          193 LAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       193 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ++|+++.+++.+|.+|..+|++++|+..|+++++++|+++.+...++.+
T Consensus        91 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~  139 (170)
T d1p5qa1          91 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC  139 (170)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998777654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.77  E-value=5.1e-18  Score=121.22  Aligned_cols=117  Identities=11%  Similarity=0.093  Sum_probs=105.2

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc--------------hHHHHHhHHHHHHHcCCHHHHHHHHHHH
Q 026145          125 NLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG--------------IHVLYKDRCLARLTMGNFSAALEDVREA  190 (243)
Q Consensus       125 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--------------~~~~~~~la~~~~~~~~~~~A~~~~~~a  190 (243)
                      ...+..+...|+.+++.|+|.+|+..|.+++...+...              ...++.++|.+|+++|++++|+..++++
T Consensus        14 ~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~a   93 (153)
T d2fbna1          14 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV   93 (153)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcc
Confidence            35677788999999999999999999999998765331              1247889999999999999999999999


Q ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          191 LELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       191 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ++++|.+..+|+++|.+|..+|++++|+..|+++++++|+++.+...+..+
T Consensus        94 l~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~  144 (153)
T d2fbna1          94 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC  144 (153)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             ccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988776543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.2e-18  Score=139.06  Aligned_cols=136  Identities=13%  Similarity=0.047  Sum_probs=127.4

Q ss_pred             EEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHhhccCCCCchHHHHHhHHHHHH
Q 026145           97 VGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKA-NFSEADGFLSQAIELKPFGGIHVLYKDRCLARL  175 (243)
Q Consensus        97 ~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~  175 (243)
                      +...+.+++|++.+++++..+|       .+..+|+.+|.++...+ ++++|+..++++++.+|++.  .+|.++|.++.
T Consensus        53 ~~~~e~~~~Al~~~~~ai~lnP-------~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~--~a~~~~~~~~~  123 (315)
T d2h6fa1          53 LQRDERSERAFKLTRDAIELNA-------ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY--QVWHHRRVLVE  123 (315)
T ss_dssp             HHHTCCCHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred             HHhCCchHHHHHHHHHHHHHCC-------CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhh--hHHHHHhHHHH
Confidence            3455688999999999999999       88999999999999876 59999999999999999987  99999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       176 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      .+|++++|+..++++++++|++..+|.++|.++..+|++++|++.++++++++|++..+|..++.+
T Consensus       124 ~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~  189 (315)
T d2h6fa1         124 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFV  189 (315)
T ss_dssp             HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999998876644

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.3e-18  Score=137.97  Aligned_cols=139  Identities=20%  Similarity=0.170  Sum_probs=129.4

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |..+...|++++|++.+++++...|       ..+.++..+|.++...|++++|+..|++++...|.+.  ..+..++.+
T Consensus       244 ~~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~  314 (388)
T d1w3ba_         244 ACVYYEQGLIDLAIDTYRRAIELQP-------HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA--DSLNNLANI  314 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCS-------SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccc--hhhhHHHHH
Confidence            4455677899999999999998887       6788899999999999999999999999999999977  899999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      +...|++++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|+++.++..++.+
T Consensus       315 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~  382 (388)
T d1w3ba_         315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT  382 (388)
T ss_dssp             HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999888765

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.75  E-value=1.6e-17  Score=120.49  Aligned_cols=116  Identities=13%  Similarity=0.262  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-------------hHHHHHhHHHHHHHcCCHHHHHHHHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-------------IHVLYKDRCLARLTMGNFSAALEDVREALE  192 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~  192 (243)
                      ..+..+...|+.+++.|+|.+|+..|.+++...|...             ...++.++|.||..+|+|++|+.++++++.
T Consensus        13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence            4567888999999999999999999999997654321             235688999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          193 LAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       193 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      ++|++..+++++|.+|..+|++++|+..|++++.++|+++.+...+..+
T Consensus        93 l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  141 (168)
T d1kt1a1          93 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMC  141 (168)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999888766543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=5.3e-17  Score=120.18  Aligned_cols=129  Identities=15%  Similarity=0.141  Sum_probs=112.6

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      .|..+...|+++.|++.|.+..   +       .++..|+++|.++...|++++|+..|+++++++|+++  .+|+++|.
T Consensus        11 ~g~~~~~~~d~~~Al~~~~~i~---~-------~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~--~a~~~~g~   78 (192)
T d1hh8a_          11 EGVLAADKKDWKGALDAFSAVQ---D-------PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA--VAYFQRGM   78 (192)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSS---S-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHhcC---C-------CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhh--hhHHHHHH
Confidence            3445566789999999997632   2       2356899999999999999999999999999999987  99999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCc----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 026145          173 ARLTMGNFSAALEDVREALELAPNY----------------TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRR  233 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  233 (243)
                      ++.++|++++|+..|++++...|.+                ..+++++|.++..+|++++|++.+.+++.+.|+...
T Consensus        79 ~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~  155 (192)
T d1hh8a_          79 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH  155 (192)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             HHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcch
Confidence            9999999999999999999875532                478999999999999999999999999999887543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=6.6e-18  Score=115.71  Aligned_cols=108  Identities=8%  Similarity=0.019  Sum_probs=97.1

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcC---CHHHHHHHHHHHHHhCCCc--HHHHHHHHH
Q 026145          132 RKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMG---NFSAALEDVREALELAPNY--TEAYICQGD  206 (243)
Q Consensus       132 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~--~~~~~~la~  206 (243)
                      -.+++.+...+++++|.+.|++++.++|+++  .+++++|.++.+.+   ++.+|+..+++++..+|.+  +.+++++|.
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~--~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~   80 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSK--STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV   80 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCH--HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence            3567888999999999999999999999988  99999999998754   5567999999999988765  458999999


Q ss_pred             HHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          207 VFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       207 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      +|..+|++++|+.+|+++++++|++..+...+..|
T Consensus        81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I  115 (122)
T d1nzna_          81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  115 (122)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            99999999999999999999999999998877654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.73  E-value=3.3e-17  Score=110.64  Aligned_cols=96  Identities=15%  Similarity=0.036  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 026145          128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDV  207 (243)
Q Consensus       128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  207 (243)
                      ....+.+|..+++.|++++|+..|++++..+|+++  .+|..+|.++..++++++|+..++++++++|+++.+++.+|.+
T Consensus        16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~   93 (112)
T d1hxia_          16 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPERE--EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS   93 (112)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhhcccccccc--hhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHH
Confidence            34567899999999999999999999999999987  9999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHh
Q 026145          208 FLAMDQYDAAEKSYSTCL  225 (243)
Q Consensus       208 ~~~~g~~~~A~~~~~~al  225 (243)
                      |..+|++++|++.+++.|
T Consensus        94 y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          94 HTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHh
Confidence            999999999999999986

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.73  E-value=3.1e-17  Score=118.99  Aligned_cols=112  Identities=18%  Similarity=0.259  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhhccC----------------CCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 026145          128 ALALRKRAEAEFEKANFSEADGFLSQAIELK----------------PFGGIHVLYKDRCLARLTMGNFSAALEDVREAL  191 (243)
Q Consensus       128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----------------p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  191 (243)
                      +..+...|..++..|+|.+|+..|.+++...                |..  ..++.++|.++.++|+|++|+..+++++
T Consensus        27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~--~~~~~nla~~~~~~~~~~~Ai~~~~~al  104 (169)
T d1ihga1          27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVA--LSCVLNIGACKLKMSDWQGAVDSCLEAL  104 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhh--HHHHHHHHHHHHhhcccchhhhhhhhhh
Confidence            4456778999999999999999999998653                332  3788999999999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          192 ELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       192 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      +++|+++.+|+++|.+|..+|++++|+..|+++++++|+++.+...+..+
T Consensus       105 ~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~  154 (169)
T d1ihga1         105 EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV  154 (169)
T ss_dssp             TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988776654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.1e-17  Score=112.85  Aligned_cols=105  Identities=19%  Similarity=0.305  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-------
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYT-------  198 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------  198 (243)
                      ..+..+..+|+.++..|+|++|+.+|+++++++|++.  .++.++|.+|..+|+|++|+..++++++++|.++       
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a   79 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM--TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA   79 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--HHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            4577888999999999999999999999999999987  9999999999999999999999999999988664       


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 026145          199 EAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIR  232 (243)
Q Consensus       199 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  232 (243)
                      .++..+|.++..++++++|+.+|.+++..+|+..
T Consensus        80 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~  113 (128)
T d1elra_          80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPD  113 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHH
Confidence            4777888899999999999999999999987643

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=2.8e-17  Score=126.64  Aligned_cols=134  Identities=18%  Similarity=0.138  Sum_probs=121.9

Q ss_pred             cCCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHH
Q 026145           92 PDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRC  171 (243)
Q Consensus        92 ~~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la  171 (243)
                      ..|..|...|++++|++.|++++...|       ..+.+|+.+|.++...|++++|+..|+++++++|+++  .++.++|
T Consensus        42 ~~G~~y~~~g~~~~A~~~~~~al~l~p-------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg  112 (259)
T d1xnfa_          42 ERGVLYDSLGLRALARNDFSQALAIRP-------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--YAHLNRG  112 (259)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT--HHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHhhccCC-------CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhh--hhHHHHH
Confidence            357778889999999999999999998       7889999999999999999999999999999999987  9999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCc------------------------------------------------------
Q 026145          172 LARLTMGNFSAALEDVREALELAPNY------------------------------------------------------  197 (243)
Q Consensus       172 ~~~~~~~~~~~A~~~~~~al~~~p~~------------------------------------------------------  197 (243)
                      .++..+|++++|+..++++++.+|++                                                      
T Consensus       113 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (259)
T d1xnfa_         113 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLME  192 (259)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999887621                                                      


Q ss_pred             ----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhh
Q 026145          198 ----------------TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRS  234 (243)
Q Consensus       198 ----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  234 (243)
                                      ..+++.+|.+|..+|++++|+..|++++..+|++-..
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  245 (259)
T d1xnfa_         193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE  245 (259)
T ss_dssp             HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred             HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH
Confidence                            2457789999999999999999999999999986543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.1e-17  Score=129.70  Aligned_cols=130  Identities=13%  Similarity=0.153  Sum_probs=113.9

Q ss_pred             CCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCH
Q 026145          101 GTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNF  180 (243)
Q Consensus       101 ~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~  180 (243)
                      +.+.++.+.+.+++...|+.     ..+..+..+|.++...|++++|+..|++++..+|++.  .+|.++|.++..+|++
T Consensus       150 ~~~~~a~~~~~~al~~~p~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~  222 (323)
T d1fcha_         150 SLFLEVKELFLAAVRLDPTS-----IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY--LLWNKLGATLANGNQS  222 (323)
T ss_dssp             HHHHHHHHHHHHHHHHSTTS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHHHhhcc-----cccccchhhHHHHHHHHHHhhhhcccccccccccccc--cchhhhhhcccccccc
Confidence            36778888888888766511     2456788999999999999999999999999999987  9999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhh
Q 026145          181 SAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSF  237 (243)
Q Consensus       181 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  237 (243)
                      ++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..
T Consensus       223 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  279 (323)
T d1fcha_         223 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE  279 (323)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred             hhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhh
Confidence            999999999999999999999999999999999999999999999999998776543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3.5e-17  Score=130.41  Aligned_cols=136  Identities=7%  Similarity=-0.028  Sum_probs=125.9

Q ss_pred             EEecC-CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHH
Q 026145           97 VGHCG-TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL  175 (243)
Q Consensus        97 ~~~~~-~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~  175 (243)
                      +...+ ++++|++.+++++..+|       ....+|+.+|.++...|++++|+..|.++++++|++.  .+|.++|.++.
T Consensus        87 l~~l~~~~~eal~~~~~al~~~p-------~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~--~a~~~~~~~~~  157 (315)
T d2h6fa1          87 LKSLQKDLHEEMNYITAIIEEQP-------KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY--HAWQHRQWVIQ  157 (315)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred             HHHhCcCHHHHHHHHHHHHHHHH-------hhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcch--HHHHHHHHHHH
Confidence            34444 68999999999999998       8899999999999999999999999999999999987  99999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC------HHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQ------YDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       176 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      .++++++|+..++++++++|.+..+|.++|.++...+.      +++|+..+.+++.++|++..++.+++.+
T Consensus       158 ~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~l  229 (315)
T d2h6fa1         158 EFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGI  229 (315)
T ss_dssp             HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHH
Confidence            99999999999999999999999999999999988776      6899999999999999999998766543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.1e-16  Score=125.45  Aligned_cols=139  Identities=19%  Similarity=0.160  Sum_probs=128.0

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |..+...|++++|...+.+.....+       ..+..+..+|.++...|++++|+..|+++++++|+++  .++.++|.+
T Consensus       210 ~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l~~~  280 (388)
T d1w3ba_         210 GNVLKEARIFDRAVAAYLRALSLSP-------NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP--DAYCNLANA  280 (388)
T ss_dssp             HHHHHTTTCTTHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH--HHHHHHHHH
T ss_pred             hhhhhccccHHHHHHHHHHhHHHhh-------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHH
Confidence            3455667789999999998887776       6677889999999999999999999999999999987  999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      +...|++++|+..+++++...|.+...+..+|.++...|++++|+..|+++++++|+++.++..++.+
T Consensus       281 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  348 (388)
T d1w3ba_         281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV  348 (388)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998887765

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.8e-16  Score=106.88  Aligned_cols=107  Identities=17%  Similarity=0.116  Sum_probs=99.6

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |..+...|++++|+..|++++...|       ..+..|..+|.++...|++++|+..|.+++.++|+++  .+|+++|.+
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~p-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~g~~   80 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLDP-------HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG--KGYSRKAAA   80 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCC-------cchhhhhcccccccccccccccchhhhhHHHhccchh--hHHHHHHHH
Confidence            3445567899999999999999998       8899999999999999999999999999999999987  999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFL  209 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  209 (243)
                      +..+|++++|+..|+++++++|+++.++..++.+..
T Consensus        81 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          81 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            999999999999999999999999999999887653

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=5.1e-16  Score=123.22  Aligned_cols=86  Identities=15%  Similarity=0.011  Sum_probs=64.0

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      .|..+...|++++|++.|++++..+|       ..+.+|+.+|.++...|++++|+..|.++++++|++.  .++..+|.
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~P-------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~   95 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQDP-------KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ--TALMALAV   95 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccc--cccccccc
Confidence            45667778899999999999998888       7788899999999999999999999999988888764  44444444


Q ss_pred             HHHHcCCHHHHHHHH
Q 026145          173 ARLTMGNFSAALEDV  187 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~  187 (243)
                      ++..+|++++|++.+
T Consensus        96 ~~~~~~~~~~A~~~~  110 (323)
T d1fcha_          96 SFTNESLQRQACEIL  110 (323)
T ss_dssp             HHHHTTCHHHHHHHH
T ss_pred             cccccccccccccch
Confidence            444444444443333

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.7e-15  Score=111.96  Aligned_cols=102  Identities=16%  Similarity=0.156  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 026145          127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGD  206 (243)
Q Consensus       127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  206 (243)
                      .+..+++.|..+...|+|++|++.|.++   .|.++  .+|+++|.+|..+|++++|+..|+++++++|+++.+|+++|.
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~--~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~   78 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAV---QDPHS--RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM   78 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTS---SSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhc---CCCCH--HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            3445668899999999999999999874   44555  899999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHhccCCCchh
Q 026145          207 VFLAMDQYDAAEKSYSTCLQIDPSIRR  233 (243)
Q Consensus       207 ~~~~~g~~~~A~~~~~~al~~~p~~~~  233 (243)
                      ++..+|++++|+..|++++...|.++.
T Consensus        79 ~~~~~g~~~~A~~~~~kAl~~~~~n~~  105 (192)
T d1hh8a_          79 LYYQTEKYDLAIKDLKEALIQLRGNQL  105 (192)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTTTCSE
T ss_pred             HHHhhccHHHHHHHHHHHHHhCccCch
Confidence            999999999999999999988776543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5.5e-16  Score=111.11  Aligned_cols=118  Identities=18%  Similarity=0.147  Sum_probs=105.4

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |..|...|++++|+..|.+++..+|       ..+..|+.+|.++...|++++|+..|+++++++|++.  .+|.++|.+
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~p-------~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~--~a~~~~g~~   87 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELNP-------SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI--KGYYRRAAS   87 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHST-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccch-------hhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccch--HHHHHHHHH
Confidence            4455678899999999999999998       8899999999999999999999999999999999987  999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH--HcCCHHHHHHH
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFL--AMDQYDAAEKS  220 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~g~~~~A~~~  220 (243)
                      +..+|++++|+..+++++.++|+++.++..++.+..  ..+.+++|+..
T Consensus        88 ~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          88 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999988887754  34446666543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.63  E-value=5.8e-16  Score=109.25  Aligned_cols=102  Identities=15%  Similarity=0.144  Sum_probs=91.4

Q ss_pred             HHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc----------CCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 026145          137 AEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM----------GNFSAALEDVREALELAPNYTEAYICQGD  206 (243)
Q Consensus       137 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~la~  206 (243)
                      .+.+.+.|++|+..|+++++++|+++  .+++++|.++..+          +.+++|+..|+++++++|+++.+|+++|.
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~--~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~   83 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDA--DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN   83 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcch--HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHH
Confidence            45667889999999999999999988  9999999999854          45689999999999999999999999999


Q ss_pred             HHHHcCC-----------HHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          207 VFLAMDQ-----------YDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       207 ~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      +|..+|+           +++|+++|++++.++|++..++..+..
T Consensus        84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~  128 (145)
T d1zu2a1          84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM  128 (145)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHH
Confidence            9988764           799999999999999999988876653

>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioredoxin-like 2Fe-2S ferredoxin
domain: Thioredoxin-like 2Fe-2S ferredoxin
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.61  E-value=4e-16  Score=102.46  Aligned_cols=76  Identities=25%  Similarity=0.504  Sum_probs=68.2

Q ss_pred             cEEEEccCC--------ccCccCHHHHHHHHHh-c----CC-CcEEEEeeCCCCCCCCCCeEEEecCCeEEEecCCHhHH
Q 026145           41 KELRVCTNR--------TCRRQGSMQILETLSS-L----AP-PEVAVKSCGCLGRCGAGPNLVALPDGVVVGHCGTPARA  106 (243)
Q Consensus        41 ~~i~vC~~~--------~c~~~G~~~~~~~l~~-~----g~-~~v~v~~~gc~g~c~~~p~~~~~~~g~~~~~~~~~~~a  106 (243)
                      +||+||+++        +|.++|+.+++++|++ +    ++ ..+.+..+||+|.|..+|+++++|++.||..+ +++++
T Consensus         2 rHi~VC~~~r~~~~~~~~C~~~G~~~v~~~l~~~l~~~~~~~~~v~v~~tgClG~C~~gP~v~i~P~~~~Y~~v-~~e~v   80 (101)
T d1m2da_           2 KHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGPVVVVYPDGVWYGQV-KPEDV   80 (101)
T ss_dssp             EEEEEECCCCCTTCTTCCTGGGTHHHHHHHHHHHHHHCHHHHTTEEEEEESCCSCGGGCSCEEEETTTEEECSC-CGGGH
T ss_pred             CEEEEeCCCCCCCCCCCcchhcCHHHHHHHHHHHhhhhcCCCCcEEEEEccCCcccCCCceEEEcCCccEEecC-CHHHH
Confidence            589999996        6999999999999987 1    22 47999999999999999999999999999999 99999


Q ss_pred             HHHHHHHhcCC
Q 026145          107 SEILMVLCGIK  117 (243)
Q Consensus       107 ~~~l~~~l~~~  117 (243)
                      .+++++++..+
T Consensus        81 ~~Iv~~hl~~g   91 (101)
T d1m2da_          81 DEIVEKHLKGG   91 (101)
T ss_dssp             HHHHHHTTTTS
T ss_pred             HHHHHHHHHCC
Confidence            99999987655

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=3.5e-16  Score=115.95  Aligned_cols=97  Identities=16%  Similarity=0.018  Sum_probs=90.0

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA  173 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~  173 (243)
                      |..+...|++++|+..|++++...|       .++.+|.++|.+|...|+|++|+..|++++.++|++.  .+|+++|.+
T Consensus        11 Gn~~~~~g~~~~Ai~~~~kal~~~p-------~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~--~a~~~lg~~   81 (201)
T d2c2la1          11 GNRLFVGRKYPEAAACYGRAITRNP-------LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV--KAHFFLGQC   81 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCS-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH--HHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcH--HHHHHHHHH
Confidence            5556778899999999999999998       7899999999999999999999999999999999987  999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHH
Q 026145          174 RLTMGNFSAALEDVREALELAPNYTE  199 (243)
Q Consensus       174 ~~~~~~~~~A~~~~~~al~~~p~~~~  199 (243)
                      +..+|+|++|+..|++++.++|++..
T Consensus        82 ~~~l~~~~~A~~~~~~al~l~p~~~~  107 (201)
T d2c2la1          82 QLEMESYDEAIANLQRAYSLAKEQRL  107 (201)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccHH
Confidence            99999999999999999999885543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.8e-14  Score=104.30  Aligned_cols=123  Identities=20%  Similarity=0.110  Sum_probs=103.5

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcch--------hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAA--------KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHV  165 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  165 (243)
                      |..+...|++++|+..|.+++...+.....        .......+.++|.++++.|+|++|+..++++|.++|+++  .
T Consensus        20 G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~--~   97 (170)
T d1p5qa1          20 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE--K   97 (170)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--H
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccch--h
Confidence            445566789999999999988554311111        123445677899999999999999999999999999987  9


Q ss_pred             HHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 026145          166 LYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAE  218 (243)
Q Consensus       166 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  218 (243)
                      +++.+|.++..+|+|++|+..|+++++++|+++.+...++.+....+...+..
T Consensus        98 a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1          98 GLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988877766554

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.55  E-value=1.3e-14  Score=103.55  Aligned_cols=106  Identities=12%  Similarity=0.091  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----------hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Q 026145          129 LALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----------IHVLYKDRCLARLTMGNFSAALEDVREALELAPN--  196 (243)
Q Consensus       129 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--  196 (243)
                      ..++..|..++..|+|++|+..|++++++.|+.+          .+.+|.++|.+|..+|+|++|+..+++++++.|.  
T Consensus        10 ~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~   89 (156)
T d2hr2a1          10 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   89 (156)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccc
Confidence            3344558899999999999999999999987643          1367999999999999999999999999987542  


Q ss_pred             ---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhh
Q 026145          197 ---------YTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRS  234 (243)
Q Consensus       197 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  234 (243)
                               ...+++++|.+|..+|++++|+..|++++++.|+....
T Consensus        90 ~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~  136 (156)
T d2hr2a1          90 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE  136 (156)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred             cccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhch
Confidence                     24578999999999999999999999999997755433

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.7e-15  Score=100.81  Aligned_cols=105  Identities=11%  Similarity=-0.003  Sum_probs=92.2

Q ss_pred             cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHH---hcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHH
Q 026145          100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFE---KANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLT  176 (243)
Q Consensus       100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~  176 (243)
                      .+++++|.+.|++++..+|       ..+.+++++|.++++   .+++++|+..|++++..+|.+....+++++|.+|..
T Consensus        12 ~~~l~~Ae~~Y~~aL~~~p-------~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~   84 (122)
T d1nzna_          12 VEDLLKFEKKFQSEKAAGS-------VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR   84 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHSC-------CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence            3478999999999999998       889999999999986   456678999999999998865323689999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 026145          177 MGNFSAALEDVREALELAPNYTEAYICQGDVFLAM  211 (243)
Q Consensus       177 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  211 (243)
                      +|+|++|+.+|+++++++|++..+...++.+..+.
T Consensus        85 ~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          85 LKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888776554

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.55  E-value=5.4e-14  Score=101.54  Aligned_cols=121  Identities=12%  Similarity=0.069  Sum_probs=100.8

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCC---------CcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHH
Q 026145           96 VVGHCGTPARASEILMVLCGIKSD---------HDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVL  166 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~---------~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  166 (243)
                      .+...|++.+|++.|.+++...+.         .....+..+..+.++|.++.+.|+|++|+..|+++++++|+++  .+
T Consensus        36 ~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~--~a  113 (169)
T d1ihga1          36 TFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT--KA  113 (169)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH--HH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhh--hH
Confidence            345667889998888777632110         0011235677889999999999999999999999999999987  99


Q ss_pred             HHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 026145          167 YKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAE  218 (243)
Q Consensus       167 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  218 (243)
                      |+++|.++..+|++++|+..|+++++++|++..+...++.+...+....++.
T Consensus       114 ~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         114 LYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988877766654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.53  E-value=2.4e-14  Score=101.78  Aligned_cols=118  Identities=14%  Similarity=0.032  Sum_probs=98.7

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcch---------hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAA---------KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIH  164 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~---------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~  164 (243)
                      |..+...|++..|+..|.+++...+.....         .......+.++|.++++.|++++|+..|++++.++|.+.  
T Consensus        24 G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~--  101 (153)
T d2fbna1          24 GNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV--  101 (153)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchhh--
Confidence            444556789999999999988544322111         112345678899999999999999999999999999987  


Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 026145          165 VLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQ  213 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  213 (243)
                      .+|+++|.++..+|++++|+..|+++++++|++..+...++.+..++++
T Consensus       102 ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~  150 (153)
T d2fbna1         102 KALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE  150 (153)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             hhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999888766543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.53  E-value=2.7e-14  Score=103.08  Aligned_cols=130  Identities=17%  Similarity=0.117  Sum_probs=105.0

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCc--------chhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHD--------AAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHV  165 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~--------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  165 (243)
                      |..+...|++.+|+..|.+++...+...        .........+.++|.++.+.++|++|+..+++++.++|++.  .
T Consensus        22 G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~--~   99 (168)
T d1kt1a1          22 GTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE--K   99 (168)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--H
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchH--H
Confidence            4455677899999999988874321100        11123455677899999999999999999999999999987  9


Q ss_pred             HHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHHh
Q 026145          166 LYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDA-AEKSYSTCL  225 (243)
Q Consensus       166 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al  225 (243)
                      +++++|.++..+|+|++|+.+|++++.++|+++.++..++.+....+++.+ ....|.+.+
T Consensus       100 a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1         100 GLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMF  160 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999888776654 334444433

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=8.4e-14  Score=90.65  Aligned_cols=84  Identities=18%  Similarity=0.130  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-----hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 026145          128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-----IHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYI  202 (243)
Q Consensus       128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  202 (243)
                      +...+.+|.++++.|+|++|+.+|++|+++.|.+.     ...++.++|.++.++|++++|+..|+++++++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            55678999999999999999999999998866432     3478999999999999999999999999999999999999


Q ss_pred             HHHHHHHHc
Q 026145          203 CQGDVFLAM  211 (243)
Q Consensus       203 ~la~~~~~~  211 (243)
                      +++.....+
T Consensus        85 Nl~~~~~~l   93 (95)
T d1tjca_          85 NLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            998765543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.49  E-value=7e-14  Score=98.35  Aligned_cols=112  Identities=15%  Similarity=-0.014  Sum_probs=97.9

Q ss_pred             EEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHH----------hcCHHHHHHHHHHhhccCCCCchHHH
Q 026145           97 VGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFE----------KANFSEADGFLSQAIELKPFGGIHVL  166 (243)
Q Consensus        97 ~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~----------~~~~~~A~~~~~~al~~~p~~~~~~~  166 (243)
                      |.+.+.+++|++.++.++..+|       .++.+++.+|.++..          .+.+++|+..|+++++++|++.  .+
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P-------~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~--~a   77 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNP-------LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD--EA   77 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH--HH
T ss_pred             HHHHccHHHHHHHHHHHHhhCC-------cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhh--HH
Confidence            3455678999999999999999       889999999999875          4556899999999999999987  99


Q ss_pred             HHhHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 026145          167 YKDRCLARLTMGN-----------FSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAA  217 (243)
Q Consensus       167 ~~~la~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  217 (243)
                      |+++|.+|..+|+           |++|++.|++++.++|++..++..++.+....+.+.++
T Consensus        78 ~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1          78 VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             HhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988764           79999999999999999999999999887666665554

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1e-13  Score=116.75  Aligned_cols=129  Identities=9%  Similarity=-0.098  Sum_probs=88.4

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHH
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFS  181 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~  181 (243)
                      .++.++..+...++..+       .....+..+|..+.+.+++++|+..+.+++..+|.    .++.++|.++...++|+
T Consensus       101 ~Y~~ai~~l~~~~~l~~-------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~LG~l~~~~~~~~  169 (497)
T d1ya0a1         101 FYTQLLQELCTVFNVDL-------PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ----HCLVHLGDIARYRNQTS  169 (497)
T ss_dssp             HHHHHHHHHTC--------------------------------------CCHHHHHHHH----HHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHCCCh-------hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH----HHHHHHHHHHHHcccHH
Confidence            45566666665566665       67778899999999999999999999999988765    67899999999999999


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          182 AALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       182 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      +|+.+|++|++++|+++.+|+++|.++...|++.+|+.+|.+++..+|.++.++.++.++
T Consensus       170 ~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~  229 (497)
T d1ya0a1         170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA  229 (497)
T ss_dssp             HHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998887653

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5.4e-13  Score=86.72  Aligned_cols=77  Identities=12%  Similarity=-0.040  Sum_probs=70.1

Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhh
Q 026145          165 VLYKDRCLARLTMGNFSAALEDVREALELAPN-------YTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSF  237 (243)
Q Consensus       165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  237 (243)
                      +-++.+|.+++..|+|.+|+.+|++|+++.|.       .+.++.++|.++.++|++++|+..++++++++|+++.++.+
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N   85 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence            56789999999999999999999999998654       36789999999999999999999999999999999999887


Q ss_pred             hhhc
Q 026145          238 KVSS  241 (243)
Q Consensus       238 ~a~i  241 (243)
                      ++.+
T Consensus        86 l~~~   89 (95)
T d1tjca_          86 LKYF   89 (95)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7653

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.40  E-value=1.2e-13  Score=92.81  Aligned_cols=90  Identities=20%  Similarity=0.114  Sum_probs=84.7

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      .|..+...|++++|+..+++++...|       ..+.+|+.+|.++...+++++|+..|+++++++|++.  .++.++|.
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~p-------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~a~~~la~   92 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKEP-------EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI--AVHAALAV   92 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHST-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhccccc-------ccchhhhhhhhhhhhhhhHHHhhcccccccccccccc--cchHHHHH
Confidence            45666778999999999999999998       7899999999999999999999999999999999987  99999999


Q ss_pred             HHHHcCCHHHHHHHHHHHH
Q 026145          173 ARLTMGNFSAALEDVREAL  191 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al  191 (243)
                      +|...|++++|++.+++.|
T Consensus        93 ~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          93 SHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHh
Confidence            9999999999999999976

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=3.4e-12  Score=101.57  Aligned_cols=131  Identities=15%  Similarity=0.045  Sum_probs=114.1

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHH----------HhcCHHHHHHHHHHhhccCCCCchHHHHHhHH
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEF----------EKANFSEADGFLSQAIELKPFGGIHVLYKDRC  171 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~----------~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la  171 (243)
                      ..++|.+++++++..+|       ....+|..++..+.          ..+++.+|+..+++++..+|++.  .+|..+|
T Consensus        44 ~~~~al~~~~~~l~~~P-------~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~--~~~~~~~  114 (334)
T d1dcea1          44 LDESVLELTSQILGANP-------DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY--GTWHHRC  114 (334)
T ss_dssp             CSHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHH
T ss_pred             ccHHHHHHHHHHHHHCC-------CcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcH--HHHHHhh
Confidence            45789999999999998       66667766665544          44558999999999999999987  9999999


Q ss_pred             HHHHHcCC--HHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145          172 LARLTMGN--FSAALEDVREALELAPNYTEAY-ICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS  241 (243)
Q Consensus       172 ~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i  241 (243)
                      .++...++  +++|+..+++++..+|.+..++ ..+|.++...+++++|+..+++++.++|++..++..++.+
T Consensus       115 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~  187 (334)
T d1dcea1         115 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCL  187 (334)
T ss_dssp             HHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHH
T ss_pred             HHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            99988775  8999999999999999998886 5678999999999999999999999999999999887765

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1e-12  Score=90.20  Aligned_cols=103  Identities=13%  Similarity=0.056  Sum_probs=88.8

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-----hHHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-----IHVLYK  168 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~  168 (243)
                      |..+...|++++|++.|++++..+|       .++.++.++|.++...|+|++|+..|+++++++|++.     +..+|.
T Consensus        11 G~~~~~~~~y~~Ai~~y~~al~~~p-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_          11 GNDAYKKKDFDTALKHYDKAKELDP-------TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCc-------ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            4445667899999999999999998       7788999999999999999999999999999998764     235788


Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 026145          169 DRCLARLTMGNFSAALEDVREALELAPNYTEAYICQ  204 (243)
Q Consensus       169 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  204 (243)
                      .+|.++..++++++|+.+|++++..+|+ +.....+
T Consensus        84 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l  118 (128)
T d1elra_          84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKC  118 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHH
Confidence            8999999999999999999999998875 4444444

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.33  E-value=8.8e-13  Score=103.23  Aligned_cols=140  Identities=14%  Similarity=0.040  Sum_probs=113.8

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHh
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKD  169 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~  169 (243)
                      |..|...+++++|.+.|.+++.... ...+....+..+.++|.+|.+.|++++|+..|++++.+.+...    ...++.+
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~-~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQK-KAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            4566778899999999998875432 1222335678899999999999999999999999999876542    2467888


Q ss_pred             HHHHHHH-cCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhh
Q 026145          170 RCLARLT-MGNFSAALEDVREALELAPN------YTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRS  234 (243)
Q Consensus       170 la~~~~~-~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  234 (243)
                      +|.++.. .|++++|++.|++++.+.+.      ...++.++|.++..+|+|++|+..|++++...|.++..
T Consensus       123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~  194 (290)
T d1qqea_         123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS  194 (290)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhh
Confidence            8988865 69999999999999987432      24578999999999999999999999999999887644

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=3.5e-13  Score=107.43  Aligned_cols=138  Identities=9%  Similarity=-0.127  Sum_probs=117.1

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHH----------------------------
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFS----------------------------  145 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----------------------------  145 (243)
                      |..+...+.+++|++.++.++..+|       .+..+|+.+|.++...|+++                            
T Consensus       151 ~~~~~~~~~~~~Al~~~~~~i~~~p-------~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~  223 (334)
T d1dcea1         151 FVAAQAAVAPAEELAFTDSLITRNF-------SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP  223 (334)
T ss_dssp             HHHHHTCCCHHHHHHHHHTTTTTTC-------CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHhccccHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcc
Confidence            3445556789999999999999998       77888999999988887764                            


Q ss_pred             --HHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026145          146 --EADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYST  223 (243)
Q Consensus       146 --~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  223 (243)
                        ++...|.+++...|.+.  ..+..++.++...+++.+|+..+.+++..+|.+..+++.+|.++..+|++++|+++|++
T Consensus       224 ~~~a~~~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~  301 (334)
T d1dcea1         224 NDQSAWFYHRWLLGRAEPL--FRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST  301 (334)
T ss_dssp             SCSHHHHHHHHHHSCCCCS--SSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhCcchh--hHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence              34444555555666655  66678899999999999999999999999999999999999999999999999999999


Q ss_pred             HhccCCCchhhhhhhhh
Q 026145          224 CLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       224 al~~~p~~~~~~~~~a~  240 (243)
                      +++++|+....|..++.
T Consensus       302 ai~ldP~~~~y~~~L~~  318 (334)
T d1dcea1         302 LKAVDPMRAAYLDDLRS  318 (334)
T ss_dssp             HHHHCGGGHHHHHHHHH
T ss_pred             HHHHCcccHHHHHHHHH
Confidence            99999999988876653

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.31  E-value=6.4e-11  Score=85.80  Aligned_cols=105  Identities=17%  Similarity=0.134  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCch--------------------HHHHHhHHHHHHHcCCHHHHHH
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGI--------------------HVLYKDRCLARLTMGNFSAALE  185 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------------~~~~~~la~~~~~~~~~~~A~~  185 (243)
                      .....+...|......|++++|+..|.+|+.+.+.+.+                    ..++.+++.++..+|++++|+.
T Consensus         9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~   88 (179)
T d2ff4a2           9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA   88 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence            45667889999999999999999999999999765421                    2578899999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-------hccCCC
Q 026145          186 DVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTC-------LQIDPS  230 (243)
Q Consensus       186 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-------l~~~p~  230 (243)
                      .+++++..+|.+..+|..++.++...|++.+|+..|+++       +.++|.
T Consensus        89 ~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          89 ELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            999999999999999999999999999999999999998       557775

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.27  E-value=7e-12  Score=97.96  Aligned_cols=140  Identities=14%  Similarity=0.031  Sum_probs=109.6

Q ss_pred             CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHH-hcCHHHHHHHHHHhhccCCCCc----hHHHHH
Q 026145           94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFE-KANFSEADGFLSQAIELKPFGG----IHVLYK  168 (243)
Q Consensus        94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~----~~~~~~  168 (243)
                      |..|...|++++|++.+.+++...+ ...........+..+|.++.. .+++++|++.|++++.+.+...    ...++.
T Consensus        84 g~~y~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~  162 (290)
T d1qqea_          84 YKCFKSGGNSVNAVDSLENAIQIFT-HRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI  162 (290)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhCCcHHHHHHHHHhhHHhh-hcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHH
Confidence            5567788899999999998875443 222233556778899988866 5999999999999998754321    246789


Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhh
Q 026145          169 DRCLARLTMGNFSAALEDVREALELAPNYT-------EAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRS  234 (243)
Q Consensus       169 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  234 (243)
                      ++|.++..+|+|++|+..|++++...|...       ..++..+.++...|+++.|...+.+++.++|..+..
T Consensus       163 ~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~s  235 (290)
T d1qqea_         163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             HHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccch
Confidence            999999999999999999999999887653       467888999999999999999999999999976654

>d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: NQO2-like
domain: NADH-quinone oxidoreductase chain 2, NQO2
species: Thermus thermophilus [TaxId: 274]

Probab=99.26  E-value=2.2e-12  Score=92.23  Aligned_cols=98  Identities=22%  Similarity=0.325  Sum_probs=78.2

Q ss_pred             CcccccccccccceeecCCCCcccccccccccccCCCcEEEEccCCccCccCHHHHHHHHHh-cCC--------CcEEEE
Q 026145            4 GFGLAFNSVLPVARLRLPSNDKSFCFPLPRARINAELKELRVCTNRTCRRQGSMQILETLSS-LAP--------PEVAVK   74 (243)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vC~~~~c~~~G~~~~~~~l~~-~g~--------~~v~v~   74 (243)
                      .+||+...|++|.++           +.+.++.+.++++|.||++++|...|+.++++++++ +|+        +.+++.
T Consensus        50 ~l~v~~a~V~~vatF-----------Y~~f~~~p~gk~~i~VC~~~~C~~~G~~~l~~~l~~~Lgi~~gett~Dg~ftle  118 (178)
T d2fug21          50 LVGTTPTEVMGVASF-----------YSYYQFVPTGKYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQ  118 (178)
T ss_dssp             HHTSCHHHHHHHHHH-----------SSSSCSSCCCSEEEEEECSHHHHTTTHHHHHHHHHHHHCCCTTCCCTTSCEEEE
T ss_pred             HHCCCHHHHHHHHHh-----------cchhcccccccceeEecCchhhhhccchhhHHHHHhhcccccccccCCCCEEEE
Confidence            367788888888544           334444556889999999999999999999999998 443        259999


Q ss_pred             eeCCCCCCCCCCeEEEecCCeEE-EecCCHhHHHHHHHHHhc
Q 026145           75 SCGCLGRCGAGPNLVALPDGVVV-GHCGTPARASEILMVLCG  115 (243)
Q Consensus        75 ~~gc~g~c~~~p~~~~~~~g~~~-~~~~~~~~a~~~l~~~l~  115 (243)
                      .+.|+|.|+.+|++.+  ++..| .++ +++++.++++.+-.
T Consensus       119 ~v~ClG~C~~APa~~I--n~~~y~~~l-t~e~~~~il~~lr~  157 (178)
T d2fug21         119 KVECLGSCHTAPVIQV--NDEPYVECV-TRARLEALLAGLRA  157 (178)
T ss_dssp             EESCCSCTTSSSCEEC--SSSSBCCSC-CHHHHHHHHHHHHT
T ss_pred             EeeccCccCCCCeEEE--cCEEecCCC-CHHHHHHHHHHHHc
Confidence            9999999999999976  66655 456 99999999987643

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.16  E-value=1.5e-11  Score=94.68  Aligned_cols=129  Identities=12%  Similarity=-0.041  Sum_probs=111.9

Q ss_pred             ecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcC
Q 026145           99 HCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMG  178 (243)
Q Consensus        99 ~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~  178 (243)
                      ..|++++|++.+++++...|       .++..+..+|..+...|++++|+..|+++++++|++.  .++..++.++...+
T Consensus         8 ~~G~l~eAl~~l~~al~~~P-------~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~--~~~~~l~~ll~a~~   78 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASP-------KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL--PGASQLRHLVKAAQ   78 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCT-------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHhcc
Confidence            45799999999999999999       8899999999999999999999999999999999976  88888898888777


Q ss_pred             CHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhh
Q 026145          179 NFSAALEDVREALE-LAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKS  236 (243)
Q Consensus       179 ~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  236 (243)
                      ...++...+.+... ..|.....+...+.++...|++++|.+.+.++.+..|+.+..+.
T Consensus        79 ~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~  137 (264)
T d1zbpa1          79 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN  137 (264)
T ss_dssp             HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred             ccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence            77776665544333 34666778888899999999999999999999999999876654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=2e-09  Score=84.38  Aligned_cols=130  Identities=11%  Similarity=-0.002  Sum_probs=111.3

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHH
Q 026145           96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL  175 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~  175 (243)
                      .+...|+.+.+..++++++...|.      .....|...+......++++.|...|.+++...|.+.  ..|...+....
T Consensus       108 ~~~~~~~~~~a~~i~~~~l~~~~~------~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~--~~~~~~a~~e~  179 (308)
T d2onda1         108 YEESRMKYEKVHSIYNRLLAIEDI------DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH--HVYVTAALMEY  179 (308)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTSSSS------CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT--HHHHHHHHHHH
T ss_pred             HHHhcccHHHHHHHHHHHHHHhcC------ChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH--HHHHHHHHHHH
Confidence            345667999999999999987751      1234677888888899999999999999999999977  88888887654


Q ss_pred             -HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 026145          176 -TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRR  233 (243)
Q Consensus       176 -~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  233 (243)
                       ..|+.+.|...|++++..+|+++..|...+..+...|++++|...|++++...|.++.
T Consensus       180 ~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~  238 (308)
T d2onda1         180 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE  238 (308)
T ss_dssp             HTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred             HhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence             4689999999999999999999999999999999999999999999999998776543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.05  E-value=3.2e-10  Score=80.14  Aligned_cols=101  Identities=18%  Similarity=0.076  Sum_probs=80.7

Q ss_pred             EEEecCCHhHHHHHHHHHhcCCCCCc-----chhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc--------
Q 026145           96 VVGHCGTPARASEILMVLCGIKSDHD-----AAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG--------  162 (243)
Q Consensus        96 ~~~~~~~~~~a~~~l~~~l~~~~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--------  162 (243)
                      .+...|++++|++.|++++...++..     ......+.++.++|.++...|+|++|+..+++++.+.|...        
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~   97 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK   97 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence            34556899999999999986554211     11234567899999999999999999999999998754321        


Q ss_pred             -hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 026145          163 -IHVLYKDRCLARLTMGNFSAALEDVREALELAPN  196 (243)
Q Consensus       163 -~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  196 (243)
                       ...+++++|.+|..+|++++|+..|++++++.|.
T Consensus        98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence             2357899999999999999999999999998764

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2e-10  Score=96.23  Aligned_cols=109  Identities=11%  Similarity=0.101  Sum_probs=83.5

Q ss_pred             CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145           93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL  172 (243)
Q Consensus        93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~  172 (243)
                      .|..+...++.+.|...+..++...         ...++..+|.++...++|++|+.+|.+|+.++|+++  .+|+++|.
T Consensus       126 lg~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~--~~~~~Lg~  194 (497)
T d1ya0a1         126 LGIISNKQTHTSAIVKPQSSSCSYI---------CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG--QPYNQLAI  194 (497)
T ss_dssp             -----------------CCHHHHHH---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS--HHHHHHHH
T ss_pred             hHHHHHhCCCHHHHHHHHHHHhCCC---------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCch--HHHHHHHH
Confidence            3556667778888887777766433         356788999999999999999999999999999988  99999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 026145          173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMD  212 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  212 (243)
                      ++...|++.+|+.+|.+++..+|..+.++.+++.++.+..
T Consensus       195 ~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         195 LASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999887544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=4.7e-09  Score=82.20  Aligned_cols=131  Identities=11%  Similarity=0.038  Sum_probs=114.6

Q ss_pred             CHhHHHHHHHHHhcC-CCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCH
Q 026145          102 TPARASEILMVLCGI-KSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNF  180 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~  180 (243)
                      ..+++.+++++++.. .|       .....|...+......|+++.|...|++++...|.+. ..+|..++......+++
T Consensus        79 ~~~~a~~i~~ral~~~~p-------~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~-~~~w~~~~~~~~~~~~~  150 (308)
T d2onda1          79 FSDEAANIYERAISTLLK-------KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP-TLVYIQYMKFARRAEGI  150 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT-HHHHHHHHHHHHHHHCH
T ss_pred             chHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHcCCh
Confidence            567889999999864 44       4566788889999999999999999999999999873 35788999999999999


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145          181 SAALEDVREALELAPNYTEAYICQGDVFL-AMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS  240 (243)
Q Consensus       181 ~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~  240 (243)
                      +.|.+.|+++++..|.+...+...+.... ..|+.+.|...|++++..+|+++..+..++.
T Consensus       151 ~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~  211 (308)
T d2onda1         151 KSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYID  211 (308)
T ss_dssp             HHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            99999999999999999999999987754 4689999999999999999999988876654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=6.2e-09  Score=81.58  Aligned_cols=134  Identities=13%  Similarity=0.058  Sum_probs=110.2

Q ss_pred             EEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHhHHH
Q 026145           97 VGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKDRCL  172 (243)
Q Consensus        97 ~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~la~  172 (243)
                      +...|++++|++.+++++...|  .........++..+|.++...|++++|+..|++++...+...    ...++.+++.
T Consensus        22 ~~~~g~~~~A~~~~~~aL~~~~--~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   99 (366)
T d1hz4a_          22 AINDGNPDEAERLAKLALEELP--PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE   99 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCC--TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhhCc--CCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence            3567899999999999998775  223334567889999999999999999999999998765432    2467788999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 026145          173 ARLTMGNFSAALEDVREALELAP--------NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIR  232 (243)
Q Consensus       173 ~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  232 (243)
                      ++...+++..|...+.+++.+.+        .....+..+|.++...|++++|...+.+++...+...
T Consensus       100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~  167 (366)
T d1hz4a_         100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ  167 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhh
Confidence            99999999999999999987542        1245778899999999999999999999998877544

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=2.7e-09  Score=83.67  Aligned_cols=134  Identities=12%  Similarity=0.089  Sum_probs=104.9

Q ss_pred             EEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc--hHHHHHhHHHHH
Q 026145           97 VGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG--IHVLYKDRCLAR  174 (243)
Q Consensus        97 ~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~la~~~  174 (243)
                      +...+.+..+...+..+.................+...+..+...+++++|...+.+++...|.+.  ....+.++|.++
T Consensus       182 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~  261 (366)
T d1hz4a_         182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ  261 (366)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            344556777777766655333212222335566778889999999999999999999999877653  245678899999


Q ss_pred             HHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 026145          175 LTMGNFSAALEDVREALEL------APNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS  230 (243)
Q Consensus       175 ~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  230 (243)
                      ...|++++|+..+++++..      .|....++..+|.+|..+|++++|++.+++++.+.+.
T Consensus       262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         262 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence            9999999999999999854      3455778999999999999999999999999987653

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.91  E-value=9.8e-09  Score=68.28  Aligned_cols=75  Identities=8%  Similarity=0.034  Sum_probs=42.3

Q ss_pred             HHHHhHHHHHHHcCC---HHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145          165 VLYKDRCLARLTMGN---FSAALEDVREALELAPNY-TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV  239 (243)
Q Consensus       165 ~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  239 (243)
                      .+.+++|.++.+..+   ..+|+..++++++.+|.+ .++++.+|..|+++|+|++|..++.++++++|++..+.....
T Consensus        36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            455555555554432   345666666666555544 355666666666666666666666666666666665554443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.83  E-value=1.7e-09  Score=83.00  Aligned_cols=89  Identities=17%  Similarity=0.153  Sum_probs=79.2

Q ss_pred             HHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 026145          135 AEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQY  214 (243)
Q Consensus       135 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  214 (243)
                      +...+..|++++|+..|+++++.+|++.  .++..++.++...|++++|+..++++++++|++..++..++.++...+..
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~--~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~   80 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDA--SLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR   80 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccc
Confidence            3456788999999999999999999988  99999999999999999999999999999999999999999999888887


Q ss_pred             HHHHHHHHHHh
Q 026145          215 DAAEKSYSTCL  225 (243)
Q Consensus       215 ~~A~~~~~~al  225 (243)
                      +++.....+..
T Consensus        81 ~~a~~~~~~~~   91 (264)
T d1zbpa1          81 KDFAQGAATAK   91 (264)
T ss_dssp             HHHTTSCCCEE
T ss_pred             HHHHHHhhhhh
Confidence            77665544433

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=1e-07  Score=63.29  Aligned_cols=82  Identities=11%  Similarity=-0.072  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHHh---cCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 026145          127 EALALRKRAEAEFEK---ANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYIC  203 (243)
Q Consensus       127 ~~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  203 (243)
                      ...+.|+.|+++.+.   .+.++|+..+++++..+|.+ ..+.++++|..|+++|+|++|..+++++|+++|++..+...
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~-~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L  112 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  112 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence            357888999999865   45679999999999999875 35799999999999999999999999999999999988776


Q ss_pred             HHHHHH
Q 026145          204 QGDVFL  209 (243)
Q Consensus       204 la~~~~  209 (243)
                      .-.+..
T Consensus       113 ~~~Ie~  118 (124)
T d2pqrb1         113 KSMVED  118 (124)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.61  E-value=2.2e-07  Score=66.69  Aligned_cols=93  Identities=20%  Similarity=0.059  Sum_probs=77.9

Q ss_pred             EecCCHhHHHHHHHHHhcCCCCCcch---------------hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc
Q 026145           98 GHCGTPARASEILMVLCGIKSDHDAA---------------KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG  162 (243)
Q Consensus        98 ~~~~~~~~a~~~l~~~l~~~~~~~~~---------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~  162 (243)
                      ...|++++|.+.|.+++...+.+...               ......++..++..+...|++++|+..+++++..+|.+.
T Consensus        22 ~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e  101 (179)
T d2ff4a2          22 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYRE  101 (179)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccH
Confidence            45679999999999998765422111               123446788999999999999999999999999999987


Q ss_pred             hHHHHHhHHHHHHHcCCHHHHHHHHHHHHH
Q 026145          163 IHVLYKDRCLARLTMGNFSAALEDVREALE  192 (243)
Q Consensus       163 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~  192 (243)
                        .+|..++.++..+|++.+|++.|+++.+
T Consensus       102 --~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2         102 --PLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             --HHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence              9999999999999999999999999843

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.53  E-value=8.6e-07  Score=60.19  Aligned_cols=111  Identities=15%  Similarity=0.098  Sum_probs=90.2

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHH----c
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLT----M  177 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~----~  177 (243)
                      ++++|++.|+++...+.         +.+++.++.  ....++++|+.+|+++.+.  .++  .+.+.+|.+|..    .
T Consensus         8 d~~~A~~~~~kaa~~g~---------~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~--~a~~~Lg~~y~~g~~~~   72 (133)
T d1klxa_           8 DLKKAIQYYVKACELNE---------MFGCLSLVS--NSQINKQKLFQYLSKACEL--NSG--NGCRFLGDFYENGKYVK   72 (133)
T ss_dssp             HHHHHHHHHHHHHHTTC---------TTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCH--HHHHHHHHHHHHCSSSC
T ss_pred             CHHHHHHHHHHHHHCCC---------hhhhhhhcc--ccccCHHHHHHHHhhhhcc--cch--hhhhhHHHhhhhccccc
Confidence            78899999999876653         334555554  3467899999999999875  444  789999999876    5


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCC
Q 026145          178 GNFSAALEDVREALELAPNYTEAYICQGDVFLA----MDQYDAAEKSYSTCLQIDP  229 (243)
Q Consensus       178 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p  229 (243)
                      .++++|+.+|+++.+.  .++.+.+.+|.+|..    ..++++|+.+|+++.+...
T Consensus        73 ~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          73 KDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             hhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            6899999999999875  578899999999987    4689999999999987653

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.36  E-value=3.7e-06  Score=63.53  Aligned_cols=98  Identities=14%  Similarity=0.181  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 026145          128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLT----MGNFSAALEDVREALELAPNYTEAYIC  203 (243)
Q Consensus       128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~  203 (243)
                      +.+++.+|..++..+++++|+.+|+++.+.  .+.  .+++++|.+|..    ..++..|..+++.+..  +.++.+...
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~--~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~--~~~~~a~~~   75 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KEN--SGCFNLGVLYYQGQGVEKNLKKAASFYAKACD--LNYSNGCHL   75 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCH--HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCH--HHHHHHHHHHHcCCCcchhHHHHHHhhccccc--ccccchhhc
Confidence            568999999999999999999999999875  444  889999999987    7799999999999875  457888999


Q ss_pred             HHHHHHH----cCCHHHHHHHHHHHhccCCCc
Q 026145          204 QGDVFLA----MDQYDAAEKSYSTCLQIDPSI  231 (243)
Q Consensus       204 la~~~~~----~g~~~~A~~~~~~al~~~p~~  231 (243)
                      +|.++..    ..+.+.|..+++++....+..
T Consensus        76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~  107 (265)
T d1ouva_          76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAE  107 (265)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             cccccccccccchhhHHHHHHHhhhhhhhhhh
Confidence            9988875    468899999999998766543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.16  E-value=2.3e-05  Score=58.94  Aligned_cols=115  Identities=13%  Similarity=0.046  Sum_probs=89.5

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHH----hcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHH-
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFE----KANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLT-  176 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~-  176 (243)
                      ....+...+........         ...++.+|..+..    ..+...+..+++.+.+.  .++  .+++++|.++.. 
T Consensus       125 ~~~~a~~~~~~~~~~~~---------~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~--g~~--~A~~~lg~~y~~g  191 (265)
T d1ouva_         125 DFKKAVEYFTKACDLND---------GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDS--PGCFNAGNMYHHG  191 (265)
T ss_dssp             CHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH--HHHHHHHHHHHHT
T ss_pred             hhHHHHHHhhhhhcccc---------cchhhhhhhhhccCCCcccccccchhhhhccccc--ccc--ccccchhhhcccC
Confidence            55566666666554443         4567788888875    46778888888888754  444  889999999987 


Q ss_pred             ---cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCc
Q 026145          177 ---MGNFSAALEDVREALELAPNYTEAYICQGDVFLA----MDQYDAAEKSYSTCLQIDPSI  231 (243)
Q Consensus       177 ---~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~  231 (243)
                         .+++++|+.+|+++.+.  .++.+++++|.+|..    ..++++|.++|+++....+..
T Consensus       192 ~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~  251 (265)
T d1ouva_         192 EGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  251 (265)
T ss_dssp             CSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             cccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence               67999999999999886  468899999999986    448999999999998876543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.68  E-value=0.00028  Score=47.17  Aligned_cols=82  Identities=16%  Similarity=0.090  Sum_probs=68.4

Q ss_pred             CCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHH----hcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHH
Q 026145          101 GTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFE----KANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLT  176 (243)
Q Consensus       101 ~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~  176 (243)
                      .+.+++.+.++++...+.         +.+.+.+|..+..    ..++.+|+.+|+++.+..  ++  .+.+++|.+|..
T Consensus        37 ~~~~~a~~~~~~aa~~g~---------~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~--~a~~~Lg~~y~~  103 (133)
T d1klxa_          37 INKQKLFQYLSKACELNS---------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQ--DGCLILGYKQYA  103 (133)
T ss_dssp             SCHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CH--HHHHHHHHHHHH
T ss_pred             cCHHHHHHHHhhhhcccc---------hhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cc--hHHHHHHHHHHc
Confidence            378999999999886664         6678889998876    568999999999998764  33  788999999987


Q ss_pred             ----cCCHHHHHHHHHHHHHhCC
Q 026145          177 ----MGNFSAALEDVREALELAP  195 (243)
Q Consensus       177 ----~~~~~~A~~~~~~al~~~p  195 (243)
                          ..++.+|+.+|+++.+...
T Consensus       104 G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_         104 GKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             CCccCCCHHHHHHHHHHHHHCCC
Confidence                5689999999999988654

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=92.17  E-value=0.42  Score=37.81  Aligned_cols=119  Identities=13%  Similarity=-0.011  Sum_probs=71.8

Q ss_pred             CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHH
Q 026145          102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFS  181 (243)
Q Consensus       102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~  181 (243)
                      +++.+...+.......+ .  ...........++..+...+..+.|............+..  ......+ ..+..+++.
T Consensus       229 d~~~a~~~l~~~~~~~~-~--~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~w~~~-~al~~~~~~  302 (450)
T d1qsaa1         229 DAENARLMIPSLAQAQQ-L--NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS--LIERRVR-MALGTGDRR  302 (450)
T ss_dssp             CHHHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH--HHHHHHH-HHHHHTCHH
T ss_pred             ChhHHHHHHHhhhhccc-c--cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchH--HHHHHHH-HHHHcCChH
Confidence            56666666655433221 0  0111122222333334445667777777777665544432  3233333 355678999


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145          182 AALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ  226 (243)
Q Consensus       182 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  226 (243)
                      .+...+...-......+...|.+|.++..+|+.++|...|..+..
T Consensus       303 ~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         303 GLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             HHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            988888654222223467889999999999999999999998875

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.93  E-value=0.44  Score=27.77  Aligned_cols=31  Identities=19%  Similarity=0.110  Sum_probs=22.5

Q ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Q 026145          125 NLEALALRKRAEAEFEKANFSEADGFLSQAI  155 (243)
Q Consensus       125 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  155 (243)
                      .+.+..+-..|..+.+.|.|++||+++++|.
T Consensus         5 LN~AH~~~RrAer~l~~~rydeAIech~kA~   35 (83)
T d2crba1           5 LNLAHQQSRRADRLLAAGKYEEAISCHRKAT   35 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3556666677788888888888887776664

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=85.28  E-value=2.5  Score=27.17  Aligned_cols=60  Identities=12%  Similarity=0.039  Sum_probs=45.3

Q ss_pred             HHhHHHHH-HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145          167 YKDRCLAR-LTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ  226 (243)
Q Consensus       167 ~~~la~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  226 (243)
                      |..+|.-+ ...|+-++-...+...++...-++..+..+|.+|.+.|...+|-+.+.+|-+
T Consensus        88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe  148 (161)
T d1wy6a1          88 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK  148 (161)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            45555444 4566666666666777776666899999999999999999999999998865

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=82.74  E-value=8.9  Score=29.70  Aligned_cols=50  Identities=10%  Similarity=-0.045  Sum_probs=22.6

Q ss_pred             HhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 026145          140 EKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREAL  191 (243)
Q Consensus       140 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  191 (243)
                      ..+++..+...+...-. .|.. .....+-+|..+..+|+.++|...|..+.
T Consensus       297 ~~~~~~~~~~~~~~l~~-~~~~-~~r~~YW~gRa~~~~G~~~~A~~~~~~~a  346 (450)
T d1qsaa1         297 GTGDRRGLNTWLARLPM-EAKE-KDEWRYWQADLLLERGREAEAKEILHQLM  346 (450)
T ss_dssp             HHTCHHHHHHHHHHSCT-TGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HcCChHHHHHHHHhcCc-cccc-HHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence            34455555544443322 2221 12344445555555555555555555443

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.03  E-value=1.4  Score=26.51  Aligned_cols=32  Identities=22%  Similarity=0.229  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc
Q 026145          126 LEALALRKRAEAEFEKANFSEADGFLSQAIEL  157 (243)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  157 (243)
                      ..+..+...|..+-..|+|++|+.+|.++++.
T Consensus        13 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~   44 (93)
T d1wfda_          13 TAAVAVLKRAVELDAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            44555667777777888888888888887654

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.58  E-value=0.85  Score=26.53  Aligned_cols=29  Identities=21%  Similarity=0.184  Sum_probs=23.4

Q ss_pred             HHHHHhHHHHHHHcCCHHHHHHHHHHHHH
Q 026145          164 HVLYKDRCLARLTMGNFSAALEDVREALE  192 (243)
Q Consensus       164 ~~~~~~la~~~~~~~~~~~A~~~~~~al~  192 (243)
                      +-.+-..|.-+...|+|++|+++.+++..
T Consensus         8 AH~~~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1           8 AHQQSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45677788889999999999988887653

>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: Mitochondrial import receptor subunit Tom20
family: Mitochondrial import receptor subunit Tom20
domain: Mitochondrial import receptor subunit Tom20
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.04  E-value=0.88  Score=27.47  Aligned_cols=27  Identities=11%  Similarity=0.283  Sum_probs=14.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 026145          169 DRCLARLTMGNFSAALEDVREALELAP  195 (243)
Q Consensus       169 ~la~~~~~~~~~~~A~~~~~~al~~~p  195 (243)
                      .+|..+...|+++++...|-.|+...|
T Consensus        25 ~lGE~Ll~~G~~~~g~~h~~nAi~Vc~   51 (95)
T d1om2a_          25 QLGEELLAQGDYEKGVDHLTNAIAVCG   51 (95)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence            345555555555555555555555554