Citrus Sinensis ID: 026163

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240--
Protein Sequence
MASASSVSRLVVILILINVGAISDKTIFVIASAAGLLSSPVQLEREALLITGWWYDNWATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHccccHHHccHHHHHccccHHccHHHHHHcccccccccccccccccccccEEccccccccccEEEEEEccccccEEEEccccccccccccEEEccccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccccccccccccEEcccccccc
Secondary Structure Prediction (SSPRO)
cccEcccccEEEEEccccHcccccccEEEEccccccccccHHHcccccccHHHHccccccccccccccccccccccHHHccccccEEEEcccccccccccHHHHcccccccEEEccccccccccccHHHcccccccEEEcccccccccccHHccccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccc
Coil and Loop (DISEMBL)
MASASSVSRLVVILILINVGAISDKTIFVIASAagllsspvQLEREALLITGwwydnwatsgnytsdhckwtgircnsagSVIRVSLLWyendnmkgelgrfnfscfpnlksfkihsnyllsgsipsEITALSMLQtlelpssrltgiipsemgrLRNLVrldlsdnyiggyipptlgrlsKLKIlnlssnflvgnipltlchlsklkilnlssnslvgnipptlghltQLTTLAMSNKVAI
Flexible Loop (DISEMBL)
masassvsRLVVILILINVGAISDKTIFVIASAAGLLSSPVQLEREALLITGWWYDNWATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTlghltqlttlamsnkvai
Low Complexity Region (SEG)
MASASSVSRLVVILILINVGAISDKTIFVIASAAGLLSSPVQLEREALLITGWWYDNWATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRlsklkilnlssnflVGNIPLTLCHlsklkilnlssnslVGNIPPTLGHLTQLTTLAMSNKVAI
Disordered region (IsUnstruct)
********RLVVILILINVGAISDKTIFVIASAAGLLSSPVQLEREALLITGWWYDNWATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTL********
Disordered Region (DISOPRED)
*********LVVILILINVGAISDKTIFVIASAAGLLSSPVQLEREALLITGWWYDNWATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI
Disordered Region (DISEMBL)
********RLVVILILINVGAISDKTIFVIASAAGLLSSPVQLEREALLITGWWYDNWATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI
Disordered Region (DISPRO)
*ASASSVSRLVVILILINVGAISDKTIFVIASAAGLLSSPVQLEREALLITGWWYDNWATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASASSVSRLVVILILINVGAISDKTIFVIASAAGLLSSPVQLEREALLITGWWYDNWATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	242	2.2.26 [Sep-21-2011]
Q9LP24	1120	Probable leucine-rich rep	no	no	0.743	0.160	0.386	8e-22
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.541	0.104	0.458	5e-21
Q94AG2	625	Somatic embryogenesis rec	no	no	0.595	0.230	0.367	2e-20
Q9C9H7	847	Receptor-like protein 12	no	no	0.789	0.225	0.349	8e-20
C0LGW6	966	LRR receptor-like serine/	no	no	0.657	0.164	0.393	5e-19
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.694	0.160	0.362	5e-19
Q9XIC7	628	Somatic embryogenesis rec	no	no	0.595	0.229	0.350	7e-19
Q9FL51	872	Probably inactive leucine	no	no	0.723	0.200	0.349	7e-19
C0LGV1	1135	LRR receptor-like serine/	no	no	0.479	0.102	0.461	7e-19
Q94F62	615	BRASSINOSTEROID INSENSITI	no	no	0.578	0.227	0.370	2e-18

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  103 bits (258), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 73/189 (38%), Positives = 102/189 (53%), Gaps = 9/189 (4%)

Query: 50  ITGWWYD-NWATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFP 108
           ++ W +D N  TS + TS    W G+ CNS GS+  ++L    N  ++G    F F    
Sbjct: 50  LSSWVHDANTNTSFSCTS----WYGVSCNSRGSIEELNL---TNTGIEGTFQDFPFISLS 102

Query: 109 NLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNY 168
           NL    +  N LLSG+IP +   LS L   +L ++ LTG I   +G L+NL  L L  NY
Sbjct: 103 NLAYVDLSMN-LLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQNY 161

Query: 169 IGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHL 228
           +   IP  LG +  +  L LS N L G+IP +L +L  L +L L  N L G IPP LG++
Sbjct: 162 LTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGNM 221

Query: 229 TQLTTLAMS 237
             +T LA+S
Sbjct: 222 ESMTDLALS 230

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  101 bits (252), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/133 (45%), Positives = 81/133 (60%), Gaps = 2/133 (1%)

Query: 109 NLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNY 168
           N++S +I  N L+ G IP  +  L  LQ L L S RLTG IPS++GRL  +  L L DNY
Sbjct: 144 NIRSLRIGDNELV-GDIPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNY 202

Query: 169 IGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHL 228
           + G IP  LG  S L +   + N L G IP  L  L  L+ILNL++NSL G IP  LG +
Sbjct: 203 LEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEM 262

Query: 229 TQLTTLA-MSNKV 240
           +QL  L+ M+N++
Sbjct: 263 SQLQYLSLMANQL 275

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q94AG2|SERK1_ARATH Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2

 Score = 99.0 bits (245), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/174 (36%), Positives = 94/174 (54%), Gaps = 30/174 (17%)

Query: 69  CKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSE 128
           C W  + CN+  SVIRV L                              N  LSG +  E
Sbjct: 58  CTWFHVTCNNENSVIRVDL-----------------------------GNAELSGHLVPE 88

Query: 129 ITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNL 188
           +  L  LQ LEL S+ +TG IPS +G L NLV LDL  N   G IP +LG+LSKL+ L L
Sbjct: 89  LGVLKNLQYLELYSNNITGPIPSNLGNLTNLVSLDLYLNSFSGPIPESLGKLSKLRFLRL 148

Query: 189 SSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI 242
           ++N L G+IP++L +++ L++L+LS+N L G++P   G  +  T ++ +N + +
Sbjct: 149 NNNSLTGSIPMSLTNITTLQVLDLSNNRLSGSVPDN-GSFSLFTPISFANNLDL 201

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Phosphorylates BRI1 on 'Ser-887' and CDC48 on at least one threonine residue and on 'Ser-41'. Confers embryogenic competence. Acts redundantly with SERK2 as a control point for sporophytic development controlling male gametophyte production. Involved in the brassinolide signaling pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 97.4 bits (241), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 112/206 (54%), Gaps = 15/206 (7%)

Query: 44  EREALL-------ITGWWY--DNWATSGNYTSDHCKWTGIRCNS-AGSVIRVSLL-WYEN 92
           +R+ALL       I   W+  + W    N ++D C W G+ CN  +G VI + +   + N
Sbjct: 38  QRDALLEFRGEFPINASWHIMNQWRGPWNKSTDCCLWNGVTCNDKSGQVISLDIPNTFLN 97

Query: 93  DNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSE 152
           + +K     F      +L      +N  L G IPS +  LS L  + L  ++  G IP+ 
Sbjct: 98  NYLKTNSSLFKLQYLRHLDL----TNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPAS 153

Query: 153 MGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNL 212
           +G L  L  L L++N + G IP +LG LS+L  L L SN LVG IP ++  L +L+ L+L
Sbjct: 154 IGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSL 213

Query: 213 SSNSLVGNIPPTLGHLTQLTTLAMSN 238
           +SN+L+G IP +LG+L+ L  L +++
Sbjct: 214 ASNNLIGEIPSSLGNLSNLVHLVLTH 239

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/183 (39%), Positives = 93/183 (50%), Gaps = 24/183 (13%)

Query: 61  SGNYTSDHCKWTGIRCNSAGSVIRVSLLWY---ENDNMKGELGRFNFSCFPNLKSFKIH- 116
           +G  +SD C+ TG              LWY     +N+ G +         N  SF+I  
Sbjct: 204 TGTLSSDMCQLTG--------------LWYFDVRGNNLTGTIPE----SIGNCTSFQILD 245

Query: 117 -SNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPP 175
            S   ++G IP  I  L +  TL L  +RLTG IP  +G ++ L  LDLSDN + G IPP
Sbjct: 246 ISYNQITGEIPYNIGFLQV-ATLSLQGNRLTGRIPEVIGLMQALAVLDLSDNELVGPIPP 304

Query: 176 TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLA 235
            LG LS    L L  N L G IP  L ++S+L  L L+ N LVG IPP LG L QL  L 
Sbjct: 305 ILGNLSFTGKLYLHGNMLTGPIPSELGNMSRLSYLQLNDNKLVGTIPPELGKLEQLFELN 364

Query: 236 MSN 238
           ++N
Sbjct: 365 LAN 367

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score = 94.7 bits (234), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/196 (36%), Positives = 96/196 (48%), Gaps = 28/196 (14%)

Query: 65  TSDHC-KWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYL--- 120
           TS  C  W G+ C S GS+IR++L    N  ++G    F FS  PNL    +  N     
Sbjct: 78  TSSFCTSWYGVAC-SLGSIIRLNLT---NTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGT 133

Query: 121 --------------------LSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLV 160
                               L G IP E+  LS L TL L  ++L G IPSE+GRL  + 
Sbjct: 134 ISPLWGRFSKLEYFDLSINQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVT 193

Query: 161 RLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGN 220
            + + DN + G IP + G L+KL  L L  N L G+IP  + +L  L+ L L  N+L G 
Sbjct: 194 EIAIYDNLLTGPIPSSFGNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGK 253

Query: 221 IPPTLGHLTQLTTLAM 236
           IP + G+L  +T L M
Sbjct: 254 IPSSFGNLKNVTLLNM 269

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9XIC7|SERK2_ARATH Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1

 Score = 94.4 bits (233), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 92/174 (52%), Gaps = 30/174 (17%)

Query: 69  CKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSE 128
           C W  + CN+  SVIRV L                              N  LSG +  +
Sbjct: 61  CTWFHVTCNNENSVIRVDL-----------------------------GNADLSGQLVPQ 91

Query: 129 ITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNL 188
           +  L  LQ LEL S+ +TG +PS++G L NLV LDL  N   G IP +LG+L KL+ L L
Sbjct: 92  LGQLKNLQYLELYSNNITGPVPSDLGNLTNLVSLDLYLNSFTGPIPDSLGKLFKLRFLRL 151

Query: 189 SSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI 242
           ++N L G IP++L ++  L++L+LS+N L G++P   G  +  T ++ +N + +
Sbjct: 152 NNNSLTGPIPMSLTNIMTLQVLDLSNNRLSGSVPDN-GSFSLFTPISFANNLDL 204

Serine/threonine-kinase involved in brassinosteroid-dependent and -independent signaling pathways. Acts redundantly with SERK1 as a control point for sporophytic development controlling male gametophyte production.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL51|Y5694_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 OS=Arabidopsis thaliana GN=At5g06940 PE=3 SV=1

 Score = 94.4 bits (233), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/186 (34%), Positives = 100/186 (53%), Gaps = 11/186 (5%)

Query: 50  ITGWWYDNWATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPN 109
           ++GW+          +S HC WTGI C  A + + VS +  ++ N+ GE+   +    P 
Sbjct: 50  LSGWF-------NTSSSHHCNWTGITCTRAPT-LYVSSINLQSLNLSGEISD-SICDLPY 100

Query: 110 LKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYI 169
           L    +  N+  +  IP +++    L+TL L S+ + G IP ++    +L  +D S N++
Sbjct: 101 LTHLDLSLNFF-NQPIPLQLSRCVTLETLNLSSNLIWGTIPDQISEFSSLKVIDFSSNHV 159

Query: 170 GGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNS-LVGNIPPTLGHL 228
            G IP  LG L  L++LNL SN L G +P  +  LS+L +L+LS NS LV  IP  LG L
Sbjct: 160 EGMIPEDLGLLFNLQVLNLGSNLLTGIVPPAIGKLSELVVLDLSENSYLVSEIPSFLGKL 219

Query: 229 TQLTTL 234
            +L  L
Sbjct: 220 DKLEQL 225

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 78/117 (66%)

Query: 121 LSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRL 180
           +SG IP EI   + L  L L ++R+TG IP  +G L+NL  LDLS+N + G +P  +   
Sbjct: 455 ISGVIPLEIGNCTSLVRLRLVNNRITGEIPKGIGFLQNLSFLDLSENNLSGPVPLEISNC 514

Query: 181 SKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMS 237
            +L++LNLS+N L G +PL+L  L+KL++L++SSN L G IP +LGHL  L  L +S
Sbjct: 515 RQLQMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLGHLISLNRLILS 571

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q94F62|BAK1_ARATH BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 86/170 (50%), Gaps = 30/170 (17%)

Query: 69  CKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSE 128
           C W  + CNS  SV RV L                              N  LSG +  +
Sbjct: 57  CTWFHVTCNSDNSVTRVDL-----------------------------GNANLSGQLVMQ 87

Query: 129 ITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNL 188
           +  L  LQ LEL S+ +TG IP ++G L  LV LDL  N + G IP TLGRL KL+ L L
Sbjct: 88  LGQLPNLQYLELYSNNITGTIPEQLGNLTELVSLDLYLNNLSGPIPSTLGRLKKLRFLRL 147

Query: 189 SSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
           ++N L G IP +L  +  L++L+LS+N L G+IP   G  +  T ++ +N
Sbjct: 148 NNNSLSGEIPRSLTAVLTLQVLDLSNNPLTGDIPVN-GSFSLFTPISFAN 196

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Controls the expression of genes associated with innate immunity in the absence of pathogens or elicitors. Involved in brassinosteroid (BR) signal transduction. Phosphorylates BRI1. May be involved in changing the equilibrium between plasma membrane-located BRI1 homodimers and endocytosed BRI1-BAK1 heterodimers. Interaction with MSBP1 stimulates the endocytosis of BAK1 and suppresses brassinosteroid signaling. Acts in pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI) via its interaction with FLS2 and the phosphorylation of BIK1. Involved in programmed cell death (PCD) control. Positively regulates the BR-dependent plant growth pathway and negatively regulates the BR-independent cell-death pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
357501099	873	Receptor protein kinase-like protein [Me	0.834	0.231	0.416	1e-32
224110038	964	predicted protein [Populus trichocarpa]	0.933	0.234	0.394	5e-32
224065673	964	predicted protein [Populus trichocarpa]	0.933	0.234	0.394	2e-31
224065665	847	predicted protein [Populus trichocarpa]	0.933	0.266	0.405	9e-31
224093626	1039	predicted protein [Populus trichocarpa]	0.925	0.215	0.390	4e-30
357451683	1029	Receptor protein kinase-like protein [Me	0.855	0.201	0.396	7e-30
357501751	799	Receptor kinase [Medicago truncatula] gi	0.847	0.256	0.402	1e-29
224110024	827	predicted protein [Populus trichocarpa]	0.954	0.279	0.388	8e-29
357501097	432	Receptor-like protein kinase [Medicago t	0.842	0.472	0.401	1e-28
224110020	1048	predicted protein [Populus trichocarpa]	0.933	0.215	0.385	1e-28

>gi|357501099|ref|XP_003620838.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355495853|gb|AES77056.1| Receptor protein kinase-like protein [Medicago truncatula]

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/209 (41%), Positives = 129/209 (61%), Gaps = 7/209 (3%)

Query: 29  VIASAAGLLSSPVQLEREALLITGWWYDNWATSGNYTSDHCKWTGIRCNSAGSVIRVSLL 88
           V  + +  ++S +Q+E  A+L +GWW  N + +    S+ C W GI CN AGS+I +++ 
Sbjct: 12  VEGTQSATMTSQLQMEANAILNSGWW--NTSDANFNISNRCNWHGISCNDAGSIIAINI- 68

Query: 89  WYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGI 148
              N ++  EL   N S F NL+S  I   + L G+IP EI  LS L  L+L ++ L G+
Sbjct: 69  ---NYSLGNELATLNLSTFHNLESLVIRP-FNLYGTIPKEIGHLSKLTHLDLSNNLLIGL 124

Query: 149 IPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLK 208
           +P  +G L  L  LD+S N + G +P +LG LSKL  L+LS+N L G +P +L +LSKL 
Sbjct: 125 VPPSLGNLSKLTHLDISYNKLVGQVPHSLGNLSKLTHLDLSNNLLAGQVPPSLGNLSKLT 184

Query: 209 ILNLSSNSLVGNIPPTLGHLTQLTTLAMS 237
            L+LS N L G +PP+LG+L++LT L +S
Sbjct: 185 HLDLSVNFLDGQVPPSLGNLSKLTHLNLS 213

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110038|ref|XP_002333164.1| predicted protein [Populus trichocarpa] gi|222835017|gb|EEE73466.1| predicted protein [Populus trichocarpa]

 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/241 (39%), Positives = 132/241 (54%), Gaps = 15/241 (6%)

Query: 1   MASASSVSRLVVIL---ILINVGAISDKTIFVIASAAGLLSSPVQLEREALLITGWWYDN 57
           MAS     +L+ +L     ++   +S   +      + LL+S    E +ALL +GWW D 
Sbjct: 1   MASIDYEPKLLAVLSISFFLSCIFVSSTGLVAALDDSALLAS----EGKALLESGWWSD- 55

Query: 58  WATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIH- 116
                N TS  CKWTGI C+ AGS+ ++S    E   +  + G+ NFSCF NL   ++H 
Sbjct: 56  ---YSNLTSHRCKWTGIVCDGAGSITKISP-PPEFLKVGNKFGKMNFSCFSNL--VRLHL 109

Query: 117 SNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPT 176
           +N+ LSGSIP +I+ L  L+ L L S+ L G +PS +G L  LV LD S N +   IPP 
Sbjct: 110 ANHELSGSIPPQISILPQLRYLNLSSNNLAGELPSSLGNLSRLVELDFSSNNLTNSIPPE 169

Query: 177 LGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAM 236
           LG L  L  L+LS N   G IP  LCHL  L+ L +  NSL G +P  +G++  L  L +
Sbjct: 170 LGNLKNLVTLSLSDNIFSGPIPSALCHLENLRHLFMDHNSLEGALPREIGNMKNLEILDV 229

Query: 237 S 237
           S
Sbjct: 230 S 230

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065673|ref|XP_002301914.1| predicted protein [Populus trichocarpa] gi|222843640|gb|EEE81187.1| predicted protein [Populus trichocarpa]

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/241 (39%), Positives = 132/241 (54%), Gaps = 15/241 (6%)

Query: 1   MASASSVSRLVVIL---ILINVGAISDKTIFVIASAAGLLSSPVQLEREALLITGWWYDN 57
           MAS     +L+ IL   I ++   +S   +      + LL+S    E +AL+ +GWW D 
Sbjct: 1   MASIDYEPKLLAILSTSIFLSSIFVSSTGLVAALDDSALLAS----EGKALVESGWWSD- 55

Query: 58  WATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIH- 116
                N TS  C WTGI C+ AGS+ ++S    E   +  + G+ NFSCF NL   ++H 
Sbjct: 56  ---YSNLTSHRCNWTGIVCDGAGSITKISP-PPEFLKVGNKFGKMNFSCFSNL--VRLHL 109

Query: 117 SNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPT 176
           +N+ LSGSIP +I+ L  L+ L L S+ L G +PS +G L  LV LD S N +   IPP 
Sbjct: 110 ANHELSGSIPPQISILPQLRYLNLSSNNLAGELPSSLGNLSRLVELDFSSNNLTNSIPPE 169

Query: 177 LGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAM 236
           LG L  L  L+LS N   G IP  LCHL  L+ L +  NSL G +P  +G++  L  L +
Sbjct: 170 LGNLKNLVTLSLSDNIFSGPIPSALCHLENLRHLFMDHNSLEGALPREIGNMKNLEILDV 229

Query: 237 S 237
           S
Sbjct: 230 S 230

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065665|ref|XP_002301910.1| predicted protein [Populus trichocarpa] gi|222843636|gb|EEE81183.1| predicted protein [Populus trichocarpa]

 Score =  139 bits (350), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 97/239 (40%), Positives = 134/239 (56%), Gaps = 13/239 (5%)

Query: 1   MASASSVSRLVVIL---ILINVGAISDKTIFVIASAAGLLSSPVQLEREALLITGWWYDN 57
           MAS     +L+ +L   I ++   +S   +      + LL+S    E +ALL +GWW D 
Sbjct: 1   MASIDYEPKLLALLSTSIFLSCIFVSCTGLVAALDDSALLAS----EGKALLESGWWSDY 56

Query: 58  WATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHS 117
                N TS  CKWTGI C+ AGS+  +S    E   +  + G+ NFSCF NL    + +
Sbjct: 57  R----NLTSHRCKWTGIVCDRAGSITDISP-PPEFLKVGNKFGKMNFSCFSNLARLHL-A 110

Query: 118 NYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTL 177
           N+ LSGSIP +I+ L  L+ L L S+ L G +PS +G L  LV LD S N     IPP L
Sbjct: 111 NHELSGSIPPQISILPQLRYLNLSSNNLAGELPSSLGNLSRLVELDFSSNNFINSIPPEL 170

Query: 178 GRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAM 236
           G L  L+IL+ S+N L G IP T+  L+KL+ L LS N++ G IP  +G+LT L  L +
Sbjct: 171 GNLKNLEILDASNNRLNGPIPRTMGSLAKLRSLILSRNAINGFIPLEIGNLTNLKDLQL 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093626|ref|XP_002334827.1| predicted protein [Populus trichocarpa] gi|222875006|gb|EEF12137.1| predicted protein [Populus trichocarpa]

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 93/238 (39%), Positives = 130/238 (54%), Gaps = 14/238 (5%)

Query: 1   MASASSVSRLVVILILINVGAISDKTIFVIASAAGLLSSPVQLEREALLITGWWYDNWAT 60
           MAS     +L+ IL      +IS     +  S A L  + +  E +AL+ +GWW    + 
Sbjct: 1   MASIDYEPKLLAIL------SISFFLSCIFVSVAALDPALLASEGKALVESGWW----SV 50

Query: 61  SGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIH-SNY 119
           + N +S  C W GI C+ AGS+I +S    E   ++ + G+ NFSCF NL   ++H +N+
Sbjct: 51  NSNLSSLRCMWLGIVCDRAGSIIEISP-PPEFLKVRNKFGKMNFSCFSNL--VRLHLANH 107

Query: 120 LLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGR 179
            LSGSIP +I+ L  L  L L S+ L G +PS +G L  LV LD S NY    IPP LG 
Sbjct: 108 ELSGSIPHQISILPQLIYLNLSSNNLAGELPSSLGNLSRLVELDFSSNYFTNSIPPELGN 167

Query: 180 LSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMS 237
           L  L  L+LS N   G IP  LCHL  L  L++  N L G +P  +G++  L +L +S
Sbjct: 168 LKNLVTLSLSYNRFSGPIPSALCHLDNLTHLHMDHNILEGALPREIGNMKNLESLDVS 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357451683|ref|XP_003596118.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355485166|gb|AES66369.1| Receptor protein kinase-like protein [Medicago truncatula]

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 86/217 (39%), Positives = 122/217 (56%), Gaps = 10/217 (4%)

Query: 31  ASAAGLLSSPVQLEREALLITGWWYDNWATSGNYTSDHCKWTGIRCNSAGSVIRVSL--- 87
             +A + S  +Q+E  A+L +GWW  ++A      SD C   GI CN AGS+I + +   
Sbjct: 15  TQSATMTSHQLQMEANAILNSGWWNTSYADFN--ISDRCHGHGIFCNDAGSIIAIKIDSD 72

Query: 88  ----LWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSS 143
                 +E D     L   N +CF NL+S  I     L G+IP EI  LS L  L++  +
Sbjct: 73  DSTYAAWEYDYKTRNLSTLNLACFKNLESLVIRK-IGLEGTIPKEIGHLSKLTHLDMSYN 131

Query: 144 RLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCH 203
            L G +P  +G L  L  LDLS N + G +P +LG LSKL  L+LS N L G +P +L +
Sbjct: 132 NLQGQVPHSLGNLSKLTHLDLSANILKGQVPHSLGNLSKLTHLDLSDNILSGVVPHSLGN 191

Query: 204 LSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKV 240
           LSKL  L+LS N L G +P +LG+L++LT L +S+ +
Sbjct: 192 LSKLTHLDLSDNLLSGVVPHSLGNLSKLTHLDLSDNL 228

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501751|ref|XP_003621164.1| Receptor kinase [Medicago truncatula] gi|355496179|gb|AES77382.1| Receptor kinase [Medicago truncatula]

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/216 (40%), Positives = 127/216 (58%), Gaps = 11/216 (5%)

Query: 26  TIFVIA--SAAGLLSSPVQLEREA--LLITGWWYDNWATSGNYTSDHCKWTGIRCNSAGS 81
           T F IA  S A   SSP+QLE+EA  L+ +GWW D      N+    C+W GI CN+ GS
Sbjct: 9   TYFFIAIMSVAASKSSPLQLEKEAQALVNSGWWND----FTNHAPTRCQWPGITCNNEGS 64

Query: 82  VIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELP 141
           +  +SL       +  + G+F+FS F NL    + S+ ++ G+IP E+  LS L  L++ 
Sbjct: 65  ITNISL--PPEIQLGDKFGKFHFSSFTNLVHLNLASHGII-GNIPFELATLSKLIFLDVS 121

Query: 142 SSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTL 201
           S+ + G IPS +  L+NL+ L+LS N + G IP ++G+L+KL  L+L +N   G+IPL +
Sbjct: 122 SNDIEGHIPSNIWSLKNLITLNLSRNKLNGSIPSSIGQLTKLTFLHLDANMFSGSIPLEI 181

Query: 202 CHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMS 237
             L  L  L+LS NS  G IP  +G L  L  L++S
Sbjct: 182 GRLQNLIHLDLSHNSFFGLIPIEIGSLKSLKYLSLS 217

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110024|ref|XP_002333161.1| predicted protein [Populus trichocarpa] gi|222835014|gb|EEE73463.1| predicted protein [Populus trichocarpa]

 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 96/247 (38%), Positives = 137/247 (55%), Gaps = 16/247 (6%)

Query: 1   MASASSVSRLVVIL---ILINVGAISDKTIFVIASAAGLLSSPVQLEREALLITGWWYDN 57
           MAS     +L+ IL     ++   +S   +      + LL+S V+    ALL +GWW   
Sbjct: 1   MASIDYEPKLLAILSISFFLSCIFVSSTGLVAALDDSALLASEVK----ALLESGWW--- 53

Query: 58  WATSGNYTSDHCK-WTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIH 116
            +   N TS  CK W GI CN AGS+ ++S    E   +  + G+ NFSCF NL   ++H
Sbjct: 54  -SQYSNLTSHRCKYWPGIFCNRAGSITKISPPP-EFLKVGNKFGKMNFSCFSNL--VRLH 109

Query: 117 -SNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPP 175
             N+ L+GSIP +I+ L  L+ L L S+ L G +PS +G L  LV LD S N     IPP
Sbjct: 110 LPNHELNGSIPPQISILPQLRYLNLSSNNLAGELPSSLGNLSRLVELDFSSNNFINSIPP 169

Query: 176 TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLA 235
            LG L  L+IL+ S+N L G IP T+  L+KL+ L LS N++ G IP  +G+LT L  L 
Sbjct: 170 ELGNLKNLEILDASNNRLNGPIPRTMGSLAKLRSLILSRNAINGFIPLEIGNLTNLKDLQ 229

Query: 236 MSNKVAI 242
           + + + +
Sbjct: 230 LISNILV 236

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501097|ref|XP_003620837.1| Receptor-like protein kinase [Medicago truncatula] gi|355495852|gb|AES77055.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/214 (40%), Positives = 122/214 (57%), Gaps = 10/214 (4%)

Query: 31  ASAAGLLSSPVQLEREALLITGWWYDNWATSGNYTSDHCKWTGIRCNSAGSVIRVSL--- 87
             +A + S  +Q+E  A+L +GWW  N + +    SD C   GI CN AGS+I + +   
Sbjct: 31  TQSATMTSHQLQMEANAILNSGWW--NTSDANFNISDRCHGHGIFCNDAGSIIAIKIDSD 88

Query: 88  ----LWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSS 143
                 +E D     L   N +CF NL+S  +     L G+I  EI  LS L  L+L ++
Sbjct: 89  DSTYAAWEYDFKTRNLSTLNLACFKNLESLVLRK-ITLEGTISKEIGHLSKLTHLDLSAN 147

Query: 144 RLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCH 203
            L G +P E+  L+NL  LDL +N   G IP +LG LSKL  LN+S N L G +P +L +
Sbjct: 148 FLEGQLPPELWLLKNLTFLDLFNNRFKGEIPSSLGNLSKLTHLNMSYNNLEGQLPHSLGN 207

Query: 204 LSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMS 237
           LSKL  L+LS+N L G +PP+L +L++LT L +S
Sbjct: 208 LSKLTHLDLSANILKGQLPPSLANLSKLTHLDLS 241

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110020|ref|XP_002333160.1| predicted protein [Populus trichocarpa] gi|222835013|gb|EEE73462.1| predicted protein [Populus trichocarpa]

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/241 (38%), Positives = 127/241 (52%), Gaps = 15/241 (6%)

Query: 1   MASASSVSRLVVIL---ILINVGAISDKTIFVIASAAGLLSSPVQLEREALLITGWWYDN 57
           MAS     +L+ +L     ++   +S   +      + LL+S    E +ALL +GWW D 
Sbjct: 1   MASIDYEPKLLAVLSISFFLSCIFVSSTGLVAALDDSALLAS----EGKALLESGWWSD- 55

Query: 58  WATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIH- 116
                N TS  CKWTGI C+ AGS+  +S    E   +  + G+ NFSCF NL   ++H 
Sbjct: 56  ---YSNLTSHRCKWTGIVCDRAGSITEISP-PPEFLKVGNKFGKMNFSCFSNL--VRLHL 109

Query: 117 SNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPT 176
           +N+ LSGSIP +I+ L  L+ L L S+ L G +PS +G L  LV LD S N     IPP 
Sbjct: 110 ANHELSGSIPHQISILPQLRYLNLSSNYLAGELPSSLGNLSRLVELDFSSNNFINSIPPE 169

Query: 177 LGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAM 236
           LG L  L  L+LS N   G I   LCHL  L  L +  N L G +P  +G++  L  L +
Sbjct: 170 LGNLKSLVTLSLSYNSFSGPIHSALCHLDNLTHLFMDHNRLEGALPREIGNMRNLEILDV 229

Query: 237 S 237
           S
Sbjct: 230 S 230

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.904	0.195	0.317	9.7e-18
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.838	0.162	0.296	2.5e-15
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.690	0.190	0.316	4.1e-15
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.727	0.216	0.3	7.7e-15
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.702	0.165	0.318	1.7e-14
TAIR|locus:2119445	719	AT4G13820 [Arabidopsis thalian	0.665	0.223	0.295	3e-14
TAIR|locus:2094603	835	RLP37 "receptor like protein 3	0.450	0.130	0.367	3.9e-14
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.685	0.168	0.305	4.4e-14
TAIR|locus:2825389	784	RLP11 "AT1G71390" [Arabidopsis	0.719	0.221	0.3	6.7e-14
TAIR|locus:2096349	860	RLP31 "receptor like protein 3	0.586	0.165	0.331	8e-14

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 9.7e-18, P = 9.7e-18
 Identities = 74/233 (31%), Positives = 106/233 (45%)

Query:    10 LVVILILINVGAISDKTIFVIASAAGLLSSPVQLEREALLITGWWYD-NWATSGNYTSDH 68
             L+ I I+++    +  TI   A A  LL         + L + W +D N  TS + TS  
Sbjct:    14 LLFISIILSCSISASATI---AEANALLKWKSTFTNSSKL-SSWVHDANTNTSFSCTS-- 67

Query:    69 CKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSE 128
               W G+ CNS GS+  ++L    N  ++G    F F    NL    +  N LLSG+IP +
Sbjct:    68 --WYGVSCNSRGSIEELNLT---NTGIEGTFQDFPFISLSNLAYVDLSMN-LLSGTIPPQ 121

Query:   129 ITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRXXXXXXXXX 188
                LS L   +L ++ LTG I   +G L+NL  L L  NY+   IP  LG          
Sbjct:   122 FGNLSKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLAL 181

Query:   189 XXXXXVGNIPLTLCHXXXXXXXXXXXXXXVGNIPPTLGHLTQLTTLAMS-NKV 240
                   G+IP +L +               G IPP LG++  +T LA+S NK+
Sbjct:   182 SQNKLTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKL 234

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 2.5e-15, P = 2.5e-15
 Identities = 62/209 (29%), Positives = 99/209 (47%)

Query:    35 GLLSSPVQ--LEREALLITGWWYDNWATSGNYTS-DHCKWTGIRCNSAGSVIRVSLLWYE 91
             G++++ +Q  LE +  L+T    D+     N  + ++C WTG+ C++ G + RV  L   
Sbjct:    21 GIINNDLQTLLEVKKSLVTNPQEDDPLRQWNSDNINYCSWTGVTCDNTG-LFRVIALNLT 79

Query:    92 NDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPS 151
                + G +  + F  F NL    + SN L+ G IP+ ++ L+ L++L L S++LTG IPS
Sbjct:    80 GLGLTGSISPW-FGRFDNLIHLDLSSNNLV-GPIPTALSNLTSLESLFLFSNQLTGEIPS 137

Query:   152 EMGRLRNLVRLDLSDNYIGGYIPPTLGRXXXXXXXXXXXXXXVGNIPLTLCHXXXXXXXX 211
             ++G L N+  L + DN + G IP TLG                G IP  L          
Sbjct:   138 QLGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLI 197

Query:   212 XXXXXXVGNIPPTLGHLTQLTTLAMSNKV 240
                    G IP  LG+ + LT    +  +
Sbjct:   198 LQDNYLEGPIPAELGNCSDLTVFTAAENM 226

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 4.1e-15, P = 4.1e-15
 Identities = 57/180 (31%), Positives = 85/180 (47%)

Query:    66 SDHCKWTGIRCNS-AGSVIRVSLL------WYENDNMKGELGRFNFSCFPNLKSFKIHSN 118
             SD C W GI C++  G VI + L+      W+ +++    L  F+F     L +  +  N
Sbjct:    67 SDCCHWDGITCDAKTGEVIEIDLMCSCLHGWFHSNSNLSMLQNFHF-----LTTLDLSYN 121

Query:   119 YLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLG 178
             +L SG I S I  LS L TL+L  +  +G IPS +G L +L  L L DN  GG IP +LG
Sbjct:   122 HL-SGQISSSIGNLSHLTTLDLSGNNFSGWIPSSLGNLFHLTSLHLYDNNFGGEIPSSLG 180

Query:   179 RXXXXXXXXXXXXXXVGNIPLTLCHXXXXXXXXXXXXXXVGNIPPTLGHLTQLTTLAMSN 238
                            VG IP +                  GN+P  + +LT+L+ +++S+
Sbjct:   181 NLSYLTFLDLSTNNFVGEIPSSFGSLNQLSILRLDNNKLSGNLPLEVINLTKLSEISLSH 240

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 200 (75.5 bits), Expect = 7.7e-15, P = 7.7e-15
 Identities = 57/190 (30%), Positives = 90/190 (47%)

Query:    57 NWATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKG----ELGRFNFSCFPNLKS 112
             +W TSG+    HC W G+ C       RV  L   + N+ G     LG  +F     L++
Sbjct:    55 SWNTSGH--GQHCTWVGVVCGRRHPH-RVVKLRLRSSNLAGIISPSLGNLSF-----LRT 106

Query:   113 FKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGY 172
              ++  N+L SG IP E++ LS LQ L L  + L+G IP+ +G L +L  L+L++N + G 
Sbjct:   107 LQLSDNHL-SGKIPQELSRLSRLQQLVLNFNSLSGEIPAALGNLTSLSVLELTNNTLSGA 165

Query:   173 IPPTLGRXXXXXXXXXXXXXXVGNIPLTLCHXXXXXXXXXXXXXXVGNIPPTLGHLTQLT 232
             IP +LG+               G+IP +                  G IP  + +++ LT
Sbjct:   166 IPSSLGKLTGLTDLALAENTLSGSIPSSFGQLRRLSFLSLAFNNLSGAIPDPIWNISSLT 225

Query:   233 TL-AMSNKVA 241
                 +SNK++
Sbjct:   226 IFEVISNKLS 235

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 198 (74.8 bits), Expect = 1.7e-14, P = 1.7e-14
 Identities = 59/185 (31%), Positives = 80/185 (43%)

Query:    57 NWATSGNYTSDHCKWTGIRCNSAGS--VIRVSLLWYENDNMKG----ELGRFNFSCFPNL 110
             +W TSG+    HC W G+ C         RV  L   + N+ G     LG  +F     L
Sbjct:    53 SWNTSGH--GQHCTWVGVVCGRRRRRHPHRVVKLLLRSSNLSGIISPSLGNLSF-----L 105

Query:   111 KSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIG 170
             +   +  NYL SG IP E++ LS LQ LEL  + + G IP+ +G    L  LDLS N + 
Sbjct:   106 RELDLGDNYL-SGEIPPELSRLSRLQLLELSDNSIQGSIPAAIGACTKLTSLDLSHNQLR 164

Query:   171 GYIPPTLGRXXXXXXXXXXXXXXV-GNIPLTLCHXXXXXXXXXXXXXXVGNIPPTLGHLT 229
             G IP  +G               + G IP  L +               G IP +LG L+
Sbjct:   165 GMIPREIGASLKHLSNLYLYKNGLSGEIPSALGNLTSLQEFDLSFNRLSGAIPSSLGQLS 224

Query:   230 QLTTL 234
              L T+
Sbjct:   225 SLLTM 229

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2119445 AT4G13820 [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
 Identities = 50/169 (29%), Positives = 73/169 (43%)

Query:    66 SDHCKWTGIRCN-SAGSVIRVSLLWYENDNMKGELGRFNFSCF--PNLKSFKIHSNYLLS 122
             +D C W GI C+   G V+ + L+   N  + G L R++ S F   +L +  + SN   S
Sbjct:    67 TDCCSWDGISCDPKTGKVVELDLM---NSFLNGPL-RYDSSLFRLQHLHNLDLGSNNF-S 121

Query:   123 GSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRXXX 182
             G +P  I +L  L+ L L    L G IPS +G L  L  LDLS N   G +P ++G    
Sbjct:   122 GILPDSIGSLKYLRVLSLGDCNLFGKIPSSLGNLTYLTNLDLSVNDFTGELPDSMGHLNK 181

Query:   183 XXXXXXXXXXXVGNIPLTLCHXXXXXXXXXXXXXXVGNIPPTLGHLTQL 231
                         GN P  L +               G +P  +  L++L
Sbjct:   182 LTELHLGSAKLSGNFPSMLLNLSELTLIDLGSNQFGGMLPSNMSSLSKL 230

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000303 "response to superoxide" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

TAIR|locus:2094603 RLP37 "receptor like protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
 Identities = 43/117 (36%), Positives = 61/117 (52%)

Query:    61 SGNYTSDHCKWTGIRCNSA-GSVIRVSLLWY-ENDNMKGELGRFNFSCFPNLKSFKI-HS 117
             S N T D C W G+ C++  G VI ++L+ Y  N ++K     F      +L+  ++ H 
Sbjct:    66 SWNKTVDCCSWEGVTCDATLGEVISLNLVSYIANTSLKSSSSLFKLR---HLRHLELSHC 122

Query:   118 NYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIP 174
             N  L G IPS I  LS L  L+L  ++L G  P  +G L  L  +DL  N +GG IP
Sbjct:   123 N--LQGEIPSSIGNLSHLTYLDLSFNQLVGEFPVSIGNLNQLEYIDLWVNALGGNIP 177

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 4.4e-14, P = 4.4e-14
 Identities = 54/177 (30%), Positives = 83/177 (46%)

Query:    66 SDHCKWTGIRCNSA-GSVIRVSLLWYENDNMKGELGRFNFSCF--PNLK---SFKIHSNY 119
             SD C W GI+C++  G VI + L +     ++G+L   N S F  P L+   +  + +N 
Sbjct:    68 SDCCYWDGIKCDAKFGDVIELDLSF---SCLRGQLNS-NSSLFRLPQLRFLTTLDLSNND 123

Query:   120 LLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGR 179
              + G IPS +  LS L TL+L  +  +G IPS +G L +L+ +D S N   G IP +LG 
Sbjct:   124 FI-GQIPSSLETLSNLTTLDLSRNHFSGRIPSSIGNLSHLIFVDFSHNNFSGQIPSSLGY 182

Query:   180 XXXXXXXXXXXXXXVGNIPLTLCHXXXXXXXXXXXXXXVGNIPPTLGHLTQLTTLAM 236
                            G +P ++ +               G +P +LG L  LT L +
Sbjct:   183 LSHLTSFNLSYNNFSGRVPSSIGNLSYLTTLRLSRNSFFGELPSSLGSLFHLTDLIL 239

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2825389 RLP11 "AT1G71390" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 6.7e-14, P = 6.7e-14
 Identities = 54/180 (30%), Positives = 83/180 (46%)

Query:    55 YDNWATSGNYTSDHCKWTGIRCNS-AGSVIRVSLL-WYENDNMKGELGRFNFSCFPNLKS 112
             +++ ++  N T+D C W G+ C+  +G VI + L     N ++K     F      +L  
Sbjct:    50 FESKSSPWNKTTDCCSWDGVTCDDKSGQVISLDLRSTLLNSSLKTNSSLFRLQYLRHLDL 109

Query:   113 FKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGY 172
                 S   L G IPS +  LS L+ LEL S+RL G IP  +G L+ L  L L DN + G 
Sbjct:   110 ----SGCNLHGEIPSSLGNLSRLENLELSSNRLVGEIPYSIGNLKQLRNLSLGDNDLIGE 165

Query:   173 IPPTLGRXXXXXXXXXXXXXXVGNIPLTLCHXXXXXXXXXXXXXXVGNIPPTLGHLTQLT 232
             IP +LG               VG +P ++ +               G+IP +  +LT+L+
Sbjct:   166 IPSSLGNLSLLLDLDLWNNSLVGEVPASIGNLNELRVMSLDRNSLSGSIPISFTNLTKLS 225

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2096349 RLP31 "receptor like protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 8.0e-14, Sum P(2) = 8.0e-14
 Identities = 49/148 (33%), Positives = 69/148 (46%)

Query:    55 YDNWATSGNYTSDHCKWTGIRCNSAGS-VIRVSLLWYE-NDNMKGELGRFNFSCFPNLKS 112
             YD   +S N + D C W G+ C++  S VI ++L     N+++K   G F      NL  
Sbjct:    56 YDVSLSSWNKSIDCCSWEGVTCDAISSEVISLNLSHVPLNNSLKPNSGLFKLQHLHNLTL 115

Query:   113 FKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGY 172
                 SN  L G IPS +  L  L  L+L  + L G +P  +G L  L  LDL DN + G 
Sbjct:   116 ----SNCSLYGDIPSSLGNLFRLTLLDLSYNYLVGQVPPSIGNLSRLTILDLWDNKLVGQ 171

Query:   173 IPPTLGRXXXXXXXXXXXXXXVGNIPLT 200
             +P ++G                GNIP+T
Sbjct:   172 LPASIGNLTQLEYLIFSHNKFSGNIPVT 199

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	242
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-27
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-23
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-19
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-04
COG5238	388	COG5238, RNA1, Ran GTPase-activating protein (RanG	3e-04

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  110 bits (277), Expect = 1e-27
 Identities = 69/176 (39%), Positives = 98/176 (55%), Gaps = 12/176 (6%)

Query: 57  NWATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIH 116
           NW    N ++D C W GI CN++    RV  +     N+ G++    F   P +++  + 
Sbjct: 50  NW----NSSADVCLWQGITCNNSS---RVVSIDLSGKNISGKISSAIFR-LPYIQTINLS 101

Query: 117 SNYLLSGSIPSEITALSM-LQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPP 175
           +N  LSG IP +I   S  L+ L L ++  TG IP   G + NL  LDLS+N + G IP 
Sbjct: 102 NNQ-LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPN 158

Query: 176 TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQL 231
            +G  S LK+L+L  N LVG IP +L +L+ L+ L L+SN LVG IP  LG +  L
Sbjct: 159 DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 96.5 bits (240), Expect = 9e-23
 Identities = 51/117 (43%), Positives = 69/117 (58%)

Query: 121 LSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRL 180
           L+G IPS +  L  LQ L L  ++L+G IP  +  L+ L+ LDLSDN + G IP  + +L
Sbjct: 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL 307

Query: 181 SKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMS 237
             L+IL+L SN   G IP+ L  L +L++L L SN   G IP  LG    LT L +S
Sbjct: 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLS 364

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 90.3 bits (224), Expect = 1e-20
 Identities = 51/132 (38%), Positives = 79/132 (59%), Gaps = 1/132 (0%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSD 166
           F +LK   +  N L+ G IP+ +T L+ L+ L L S++L G IP E+G++++L  + L  
Sbjct: 163 FSSLKVLDLGGNVLV-GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221

Query: 167 NYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLG 226
           N + G IP  +G L+ L  L+L  N L G IP +L +L  L+ L L  N L G IPP++ 
Sbjct: 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF 281

Query: 227 HLTQLTTLAMSN 238
            L +L +L +S+
Sbjct: 282 SLQKLISLDLSD 293

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 87.2 bits (216), Expect = 1e-19
 Identities = 56/122 (45%), Positives = 72/122 (59%), Gaps = 1/122 (0%)

Query: 121 LSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRL 180
           LSG IP EI  L+ L  L+L  + LTG IPS +G L+NL  L L  N + G IPP++  L
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283

Query: 181 SKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAM-SNK 239
            KL  L+LS N L G IP  +  L  L+IL+L SN+  G IP  L  L +L  L + SNK
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 240 VA 241
            +
Sbjct: 344 FS 345

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 85.3 bits (211), Expect = 6e-19
 Identities = 41/89 (46%), Positives = 61/89 (68%)

Query: 138 LELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNI 197
           L L +  L G IP+++ +LR+L  ++LS N I G IPP+LG ++ L++L+LS N   G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 198 PLTLCHLSKLKILNLSSNSLVGNIPPTLG 226
           P +L  L+ L+ILNL+ NSL G +P  LG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 78.4 bits (193), Expect = 1e-16
 Identities = 51/125 (40%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 110 LKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYI 169
           L+   + SN L+ G IP E+  +  L+ + L  + L+G IP E+G L +L  LDL  N +
Sbjct: 190 LEFLTLASNQLV-GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248

Query: 170 GGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLT 229
            G IP +LG L  L+ L L  N L G IP ++  L KL  L+LS NSL G IP  +  L 
Sbjct: 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308

Query: 230 QLTTL 234
            L  L
Sbjct: 309 NLEIL 313

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 78.4 bits (193), Expect = 1e-16
 Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 1/116 (0%)

Query: 109 NLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNY 168
            L++  +  N   SG++P ++ +LS L  L+L  ++L+G IP E+   + LV LDLS N 
Sbjct: 476 RLENLDLSRN-QFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534

Query: 169 IGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPT 224
           + G IP +   +  L  L+LS N L G IP  L ++  L  +N+S N L G++P T
Sbjct: 535 LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 78.4 bits (193), Expect = 1e-16
 Identities = 50/118 (42%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 109 NLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNY 168
            L S  +  N L SG IP  +  L  L+ L L S+  TG IP  +  L  L  L L  N 
Sbjct: 285 KLISLDLSDNSL-SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 169 IGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLG 226
             G IP  LG+ + L +L+LS+N L G IP  LC    L  L L SNSL G IP +LG
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG 401

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 77.6 bits (191), Expect = 2e-16
 Identities = 47/114 (41%), Positives = 65/114 (57%), Gaps = 3/114 (2%)

Query: 121 LSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRL 180
           LSG IP  I +L  L +L+L  + L+G IP  + +L+NL  L L  N   G IP  L  L
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL 331

Query: 181 SKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTL---GHLTQL 231
            +L++L L SN   G IP  L   + L +L+LS+N+L G IP  L   G+L +L
Sbjct: 332 PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL 385

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 74.5 bits (183), Expect = 2e-15
 Identities = 56/181 (30%), Positives = 88/181 (48%), Gaps = 28/181 (15%)

Query: 81  SVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPS---EITALSML-- 135
           S+ RV L   ++++  GEL    F+  P +    I +N L  G I S   ++ +L ML  
Sbjct: 405 SLRRVRL---QDNSFSGELPS-EFTKLPLVYFLDISNNNL-QGRINSRKWDMPSLQMLSL 459

Query: 136 ------------------QTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTL 177
                             + L+L  ++ +G +P ++G L  L++L LS+N + G IP  L
Sbjct: 460 ARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL 519

Query: 178 GRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMS 237
               KL  L+LS N L G IP +   +  L  L+LS N L G IP  LG++  L  + +S
Sbjct: 520 SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579

Query: 238 N 238
           +
Sbjct: 580 H 580

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 74.9 bits (184), Expect = 2e-15
 Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 4/126 (3%)

Query: 118 NYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTL 177
           N  L G IP++I+ L  LQ++ L  + + G IP  +G + +L  LDLS N   G IP +L
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 178 GRLSKLKILNLSSNFLVGNIPLTL-CHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAM 236
           G+L+ L+ILNL+ N L G +P  L   L      N + N+ +  IP   G       L++
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP---GLRACGPHLSV 543

Query: 237 SNKVAI 242
             K+ I
Sbjct: 544 GAKIGI 549

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 72.2 bits (177), Expect = 2e-14
 Identities = 49/130 (37%), Positives = 67/130 (51%), Gaps = 1/130 (0%)

Query: 109 NLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNY 168
           NL+   + SN   +G IP  +T+L  LQ L+L S++ +G IP  +G+  NL  LDLS N 
Sbjct: 309 NLEILHLFSNNF-TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367

Query: 169 IGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHL 228
           + G IP  L     L  L L SN L G IP +L     L+ + L  NS  G +P     L
Sbjct: 368 LTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL 427

Query: 229 TQLTTLAMSN 238
             +  L +SN
Sbjct: 428 PLVYFLDISN 437

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.5 bits (165), Expect = 6e-13
 Identities = 31/73 (42%), Positives = 47/73 (64%)

Query: 162 LDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNI 221
           L L +  + G+IP  + +L  L+ +NLS N + GNIP +L  ++ L++L+LS NS  G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 222 PPTLGHLTQLTTL 234
           P +LG LT L  L
Sbjct: 483 PESLGQLTSLRIL 495

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 3e-10
 Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 10/142 (7%)

Query: 71  WTGIRC---NSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPS 127
           W+G  C   ++ G    +  L  +N  ++G +   + S   +L+S  +  N +  G+IP 
Sbjct: 404 WSGADCQFDSTKGKWF-IDGLGLDNQGLRGFIPN-DISKLRHLQSINLSGNSI-RGNIPP 460

Query: 128 EITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLG-RLSKLKIL 186
            + +++ L+ L+L  +   G IP  +G+L +L  L+L+ N + G +P  LG RL      
Sbjct: 461 SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520

Query: 187 NLSSNFLVGNIP-LTLC--HLS 205
           N + N  +  IP L  C  HLS
Sbjct: 521 NFTDNAGLCGIPGLRACGPHLS 542

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 57.9 bits (140), Expect = 1e-09
 Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 10/150 (6%)

Query: 81  SVIRVSLLWYENDNMKGE----LGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQ 136
           S+ R+ +L   ++   GE    LG+ N     NL    + +N L +G IP  + +   L 
Sbjct: 330 SLPRLQVLQLWSNKFSGEIPKNLGKHN-----NLTVLDLSTNNL-TGEIPEGLCSSGNLF 383

Query: 137 TLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGN 196
            L L S+ L G IP  +G  R+L R+ L DN   G +P    +L  +  L++S+N L G 
Sbjct: 384 KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR 443

Query: 197 IPLTLCHLSKLKILNLSSNSLVGNIPPTLG 226
           I      +  L++L+L+ N   G +P + G
Sbjct: 444 INSRKWDMPSLQMLSLARNKFFGGLPDSFG 473

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 49.6 bits (118), Expect = 5e-07
 Identities = 47/132 (35%), Positives = 75/132 (56%), Gaps = 6/132 (4%)

Query: 108 PNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDN 167
            NLK   +  N + S  +PS +  L  L+ L+L  + L+  +P  +  L NL  LDLS N
Sbjct: 140 SNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGN 196

Query: 168 YIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGH 227
            I   +PP +  LS L+ L+LS+N ++  +  +L +L  L  L LS+N L  ++P ++G+
Sbjct: 197 KISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGN 253

Query: 228 LTQLTTLAMSNK 239
           L+ L TL +SN 
Sbjct: 254 LSNLETLDLSNN 265

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 24/52 (46%), Positives = 32/52 (61%)

Query: 186 LNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMS 237
           L L +  L G IP  +  L  L+ +NLS NS+ GNIPP+LG +T L  L +S
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLS 474

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 6e-06
 Identities = 23/60 (38%), Positives = 30/60 (50%)

Query: 158 NLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSL 217
           NL  LDLS+N +          L  LK+L+LS N L    P     L  L+ L+LS N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 22/57 (38%), Positives = 30/57 (52%)

Query: 135 LQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSN 191
           L++L+L ++RLT I       L NL  LDLS N +    P     L  L+ L+LS N
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 3/117 (2%)

Query: 126 PSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKI 185
            SE+  L+ L +L+L ++ +T I P       NL  LDLSDN I   +P  L  L  LK 
Sbjct: 109 ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKN 167

Query: 186 LNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI 242
           L+LS N L  ++P  L +LS L  L+LS N  + ++PP +  L+ L  L +SN   I
Sbjct: 168 LDLSFNDLS-DLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSII 222

Length = 394

>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 18/105 (17%)

Query: 152 EMGRLRNLVRLDLSDNYIGG----YIPPTLGRLSKLKILNLSSNFL---VGNIPLTLCHL 204
           E+  +  LV +DLS N IG      +   +  +  L+++N S  F       +   L  L
Sbjct: 25  ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVML 84

Query: 205 SK-------LKILNLSSNSLVGNIPPTLG----HLTQLTTLAMSN 238
            K       L+ ++LS N+     P  LG      T L  L ++N
Sbjct: 85  LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNN 129

Length = 388

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	242
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.94
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.82
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.75
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.63
PLN03150	623	hypothetical protein; Provisional	99.62
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.6
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.58
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.53
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.48
PLN03150	623	hypothetical protein; Provisional	99.46
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.45
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.45
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.36
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.36
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.35
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.35
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.34
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.31
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.3
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.3
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.29
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.28
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.25
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.24
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.24
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.22
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.18
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.12
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.11
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.1
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.1
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.09
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.02
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.94
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.87
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.66
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.65
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.58
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.56
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.52
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.52
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.51
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.49
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.43
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.38
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.37
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.36
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.36
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.27
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	98.18
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.09
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.08
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.96
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.83
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.82
PRK15386	426	type III secretion protein GogB; Provisional	97.81
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.75
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.73
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	97.64
PRK15386	426	type III secretion protein GogB; Provisional	97.61
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.55
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.53
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.52
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.46
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.18
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.08
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.07
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.66
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.61
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.16
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.57
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.45
KOG1947	482	consensus Leucine rich repeat proteins, some prote	92.38
smart00370	26	LRR Leucine-rich repeats, outliers.	91.08
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.08
smart00370	26	LRR Leucine-rich repeats, outliers.	90.91
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.91
KOG4308	478	consensus LRR-containing protein [Function unknown	90.21
KOG4308	478	consensus LRR-containing protein [Function unknown	90.02
KOG4341	483	consensus F-box protein containing LRR [General fu	89.0
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	88.95
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	87.52
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.21
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	85.12
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	84.62
KOG4341	483	consensus F-box protein containing LRR [General fu	84.53
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	82.83

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.94  E-value=1e-25  Score=215.61  Aligned_cols=192  Identities=36%  Similarity=0.583  Sum_probs=128.3

Q ss_pred             cHHHHHHHHhc-CCC------CCCCCCCCCCCCCCCcccceEeCCCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEE
Q 026163           41 VQLEREALLIT-GWW------YDNWATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSF  113 (242)
Q Consensus        41 ~~~~~~~l~~~-~~w------~~~~~~~~~~~~~~C~w~gv~c~~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L  113 (242)
                      .+.|+.+|+.. ..+      ...|    ....++|.|.||+|+..++|+.|+++++   ++.+.+ +..+..+++|++|
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w----~~~~~~c~w~gv~c~~~~~v~~L~L~~~---~i~~~~-~~~~~~l~~L~~L   98 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNW----NSSADVCLWQGITCNNSSRVVSIDLSGK---NISGKI-SSAIFRLPYIQTI   98 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCC----CCCCCCCcCcceecCCCCcEEEEEecCC---CccccC-ChHHhCCCCCCEE
Confidence            45788888761 111      1222    1246899999999987889999999988   888877 6778889999999


Q ss_pred             EecCCCcccccCchhhh-cCCCCCEEeccCccCCC----------------------CCChhccCCcCCcEEEcccCcCC
Q 026163          114 KIHSNYLLSGSIPSEIT-ALSMLQTLELPSSRLTG----------------------IIPSEMGRLRNLVRLDLSDNYIG  170 (242)
Q Consensus       114 ~l~~~~~~~~~~p~~~~-~l~~L~~L~l~~n~l~~----------------------~~p~~~~~l~~L~~L~Ls~N~l~  170 (242)
                      ++++|+ +.+.+|..+. .+++|++|++++|++++                      .+|..++++++|++|++++|.+.
T Consensus        99 ~Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~  177 (968)
T PLN00113         99 NLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV  177 (968)
T ss_pred             ECCCCc-cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence            998654 4556776544 66666666666666654                      44445555566666666666665


Q ss_pred             CCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163          171 GYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       171 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l  241 (242)
                      +.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..++++++|++|++++|++
T Consensus       178 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  248 (968)
T PLN00113        178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL  248 (968)
T ss_pred             ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence            55566666666666666666666655666666666666666666666666666666666666666666654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.82  E-value=3.3e-20  Score=177.79  Aligned_cols=137  Identities=37%  Similarity=0.602  Sum_probs=61.4

Q ss_pred             CcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCC
Q 026163          103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSK  182 (242)
Q Consensus       103 ~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  182 (242)
                      .+..+++|++|++++|. +.+.+|..+.++++|++|++++|++++.+|..++++++|++|++++|++++.+|..++++++
T Consensus       159 ~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  237 (968)
T PLN00113        159 DIGSFSSLKVLDLGGNV-LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS  237 (968)
T ss_pred             HHhcCCCCCEEECccCc-ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCC
Confidence            34444444444444322 22334444444444444444444444444444444444444444444444444444444444


Q ss_pred             CCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCC
Q 026163          183 LKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKV  240 (242)
Q Consensus       183 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~  240 (242)
                      |++|++++|.+++.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.
T Consensus       238 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  295 (968)
T PLN00113        238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS  295 (968)
T ss_pred             CCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence            4444444444444444444444444444444444444444444444444444444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.75  E-value=9.1e-21  Score=141.64  Aligned_cols=155  Identities=26%  Similarity=0.449  Sum_probs=139.4

Q ss_pred             CCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCc
Q 026163           78 SAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLR  157 (242)
Q Consensus        78 ~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~  157 (242)
                      ...++++|.++++   .+. .+ ++.+..+.+|+.|++.+|.+  ..+|..++.+++|+.|++.-|++. ..|..|+.++
T Consensus        31 ~~s~ITrLtLSHN---Kl~-~v-ppnia~l~nlevln~~nnqi--e~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p  102 (264)
T KOG0617|consen   31 NMSNITRLTLSHN---KLT-VV-PPNIAELKNLEVLNLSNNQI--EELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP  102 (264)
T ss_pred             chhhhhhhhcccC---cee-ec-CCcHHHhhhhhhhhcccchh--hhcChhhhhchhhhheecchhhhh-cCccccCCCc
Confidence            3567899999987   554 44 78899999999999996655  578999999999999999999998 8999999999


Q ss_pred             CCcEEEcccCcCCC-CCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeC
Q 026163          158 NLVRLDLSDNYIGG-YIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAM  236 (242)
Q Consensus       158 ~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l  236 (242)
                      .|+.||+.+|.+.. .+|..|-.+..|+.|++++|.+. .+|..++++++|+.|.+.+|.+- .+|..++.+++|++|.+
T Consensus       103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhi  180 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHI  180 (264)
T ss_pred             hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhc
Confidence            99999999999863 67888888999999999999999 78999999999999999999987 78999999999999999


Q ss_pred             cCCCCC
Q 026163          237 SNKVAI  242 (242)
Q Consensus       237 s~N~lt  242 (242)
                      .+|+++
T Consensus       181 qgnrl~  186 (264)
T KOG0617|consen  181 QGNRLT  186 (264)
T ss_pred             ccceee
Confidence            999874

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.63  E-value=9.1e-18  Score=125.66  Aligned_cols=135  Identities=24%  Similarity=0.456  Sum_probs=123.7

Q ss_pred             CCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCC
Q 026163          102 FNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLS  181 (242)
Q Consensus       102 ~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  181 (242)
                      +.+-.+.+++.|.+++|++  ..+|+.+..+.+|+.|++.+|++. .+|..++.+++|+.|+++-|++. ..|..|+.++
T Consensus        27 ~gLf~~s~ITrLtLSHNKl--~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p  102 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNKL--TVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP  102 (264)
T ss_pred             ccccchhhhhhhhcccCce--eecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc
Confidence            4455677888999998887  568888999999999999999999 88999999999999999999998 8999999999


Q ss_pred             CCCEEEeecCCCcc-ccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163          182 KLKILNLSSNFLVG-NIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       182 ~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l  241 (242)
                      .|+.|++.+|.+.. .+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+.+|.+
T Consensus       103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl  162 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL  162 (264)
T ss_pred             hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence            99999999999875 68989999999999999999998 7899999999999999999975

>PLN03150 hypothetical protein; Provisional

Probab=99.62  E-value=3.8e-15  Score=136.11  Aligned_cols=149  Identities=24%  Similarity=0.393  Sum_probs=94.4

Q ss_pred             CCcHHHHHHHHh-cCCCCCCCCCCCCCCCCCC-----cccceEeCCC-----CCeEEEEecccCCCCceeeeCCCCcCCC
Q 026163           39 SPVQLEREALLI-TGWWYDNWATSGNYTSDHC-----KWTGIRCNSA-----GSVIRVSLLWYENDNMKGELGRFNFSCF  107 (242)
Q Consensus        39 ~~~~~~~~~l~~-~~~w~~~~~~~~~~~~~~C-----~w~gv~c~~~-----~~v~~L~l~~~~~~~~~~~i~~~~~~~l  107 (242)
                      .+.+.|..||.. ...+.. ....+ |..++|     .|.||.|...     ..++.|+|.++   ++.|.+ +..+..+
T Consensus       368 ~t~~~~~~aL~~~k~~~~~-~~~~~-W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n---~L~g~i-p~~i~~L  441 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLGL-PLRFG-WNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ---GLRGFI-PNDISKL  441 (623)
T ss_pred             ccCchHHHHHHHHHHhcCC-cccCC-CCCCCCCCcccccccceeeccCCCCceEEEEEECCCC---CccccC-CHHHhCC
Confidence            456678888876 112211 00001 123455     7999999521     13777777776   777766 5667777


Q ss_pred             CCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCC-CCCCEE
Q 026163          108 PNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRL-SKLKIL  186 (242)
Q Consensus       108 ~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L  186 (242)
                      ++|+.|++++| .+.|.+|..+..+++|++|++++|++++.+|..++++++|++|++++|++++.+|..+... .++..+
T Consensus       442 ~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l  520 (623)
T PLN03150        442 RHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF  520 (623)
T ss_pred             CCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence            77777777743 3456677667777777777777777777777777777777777777777777777666543 345566


Q ss_pred             EeecCCCc
Q 026163          187 NLSSNFLV  194 (242)
Q Consensus       187 ~L~~N~l~  194 (242)
                      ++.+|...
T Consensus       521 ~~~~N~~l  528 (623)
T PLN03150        521 NFTDNAGL  528 (623)
T ss_pred             EecCCccc
Confidence            66666543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.60  E-value=6.7e-16  Score=134.32  Aligned_cols=139  Identities=24%  Similarity=0.258  Sum_probs=59.6

Q ss_pred             CCCcCCCCCCCEEEecCCCcccccCc-hhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCC
Q 026163          101 RFNFSCFPNLKSFKIHSNYLLSGSIP-SEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGR  179 (242)
Q Consensus       101 ~~~~~~l~~L~~L~l~~~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  179 (242)
                      ...|..+.+|..|.|+.|++  ..+| ..|..+++|+.|+|..|+|.-.---.|.++++|+.|.+..|.+...-...|..
T Consensus       190 ~~~F~~lnsL~tlkLsrNri--ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~  267 (873)
T KOG4194|consen  190 TGHFDSLNSLLTLKLSRNRI--TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYG  267 (873)
T ss_pred             cccccccchheeeecccCcc--cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceee
Confidence            33444444444444443333  1232 22444555555555555443111122233333333333333333222223333


Q ss_pred             CCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163          180 LSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       180 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l  241 (242)
                      +.++++|+|..|++...-...+.++++|+.|++++|.|...-++.+...++|+.|+|++|+|
T Consensus       268 l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i  329 (873)
T KOG4194|consen  268 LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI  329 (873)
T ss_pred             ecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccc
Confidence            44444444444444433333444455555555555555544445555555555555555554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.58  E-value=1e-15  Score=133.23  Aligned_cols=156  Identities=24%  Similarity=0.275  Sum_probs=121.5

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL  159 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  159 (242)
                      ..++.|+++++   .+. .++...|.++++|+.+++..|..  ..+|.......+|+.|+|.+|.|+..-.+.+..++.|
T Consensus        78 ~~t~~LdlsnN---kl~-~id~~~f~nl~nLq~v~l~~N~L--t~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~al  151 (873)
T KOG4194|consen   78 SQTQTLDLSNN---KLS-HIDFEFFYNLPNLQEVNLNKNEL--TRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPAL  151 (873)
T ss_pred             cceeeeecccc---ccc-cCcHHHHhcCCcceeeeeccchh--hhcccccccccceeEEeeeccccccccHHHHHhHhhh
Confidence            35677888876   443 34466788899999999986555  4678755556678889999988887666778888888


Q ss_pred             cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCC
Q 026163          160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNK  239 (242)
Q Consensus       160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N  239 (242)
                      +.|||+.|.|+...-..|..-.++++|+|++|+|+..-...|..+.+|..|.|++|+++...+..|+++++|+.|+|..|
T Consensus       152 rslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN  231 (873)
T KOG4194|consen  152 RSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN  231 (873)
T ss_pred             hhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence            88888888888555556777778888888888888766777888888888888888888666677778888888888888


Q ss_pred             CC
Q 026163          240 VA  241 (242)
Q Consensus       240 ~l  241 (242)
                      +|
T Consensus       232 ~i  233 (873)
T KOG4194|consen  232 RI  233 (873)
T ss_pred             ce
Confidence            76

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.53  E-value=7.8e-16  Score=135.12  Aligned_cols=137  Identities=31%  Similarity=0.431  Sum_probs=85.6

Q ss_pred             CCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCCh-hccCCcCCcEEEcccCcCCCCCCcCcCC
Q 026163          101 RFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPS-EMGRLRNLVRLDLSDNYIGGYIPPTLGR  179 (242)
Q Consensus       101 ~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  179 (242)
                      |..+..+..|+.||+++|..  .+.|..+..-+++-+|++++|+|. .+|. .+-++.-|-+|||++|++. .+|+.+..
T Consensus        96 P~diF~l~dLt~lDLShNqL--~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RR  171 (1255)
T KOG0444|consen   96 PTDIFRLKDLTILDLSHNQL--REVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRR  171 (1255)
T ss_pred             Cchhcccccceeeecchhhh--hhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHH
Confidence            45555666666666665544  345555555556666666666665 3333 2345556666666666665 55555666


Q ss_pred             CCCCCEEEeecCCCc-------------------------cccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEE
Q 026163          180 LSKLKILNLSSNFLV-------------------------GNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTL  234 (242)
Q Consensus       180 l~~L~~L~L~~N~l~-------------------------~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  234 (242)
                      +..|++|.|++|.+.                         ..+|..+..+.+|..+|++.|.+. .+|+.+.++++|+.|
T Consensus       172 L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrL  250 (1255)
T KOG0444|consen  172 LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRL  250 (1255)
T ss_pred             HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhhee
Confidence            666666666665431                         135556666677777777777776 677777788888888


Q ss_pred             eCcCCCCC
Q 026163          235 AMSNKVAI  242 (242)
Q Consensus       235 ~ls~N~lt  242 (242)
                      +||+|.||
T Consensus       251 NLS~N~it  258 (1255)
T KOG0444|consen  251 NLSGNKIT  258 (1255)
T ss_pred             ccCcCcee
Confidence            88888764

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.48  E-value=4.5e-15  Score=130.43  Aligned_cols=136  Identities=32%  Similarity=0.464  Sum_probs=75.6

Q ss_pred             CCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCC-CCChhccCCcCCcEEEcccCcCCCCCCcCcCC
Q 026163          101 RFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTG-IIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGR  179 (242)
Q Consensus       101 ~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  179 (242)
                      |..++.+.+|+.|.+.+|+..  .+-..+..++.|+.+++..|++.. -+|..+..+..|..|||++|+++ ..|..+..
T Consensus        48 PeEL~~lqkLEHLs~~HN~L~--~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~  124 (1255)
T KOG0444|consen   48 PEELSRLQKLEHLSMAHNQLI--SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEY  124 (1255)
T ss_pred             hHHHHHHhhhhhhhhhhhhhH--hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhh
Confidence            344444444444444444431  223334444455555555554431 24555556666666666666666 55666666


Q ss_pred             CCCCCEEEeecCCCcccccc-ccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163          180 LSKLKILNLSSNFLVGNIPL-TLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       180 l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l  241 (242)
                      .+++..|+|++|+|. .+|. .+-+++.|-+|||++|++. .+|+-+..+..|++|+|++|++
T Consensus       125 AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  125 AKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPL  185 (1255)
T ss_pred             hcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChh
Confidence            666666666666666 3333 3455666666666666665 4555566666677777777654

>PLN03150 hypothetical protein; Provisional

Probab=99.46  E-value=1.2e-13  Score=126.26  Aligned_cols=106  Identities=39%  Similarity=0.700  Sum_probs=81.3

Q ss_pred             CCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEccc
Q 026163          135 LQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSS  214 (242)
Q Consensus       135 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~  214 (242)
                      ++.|+|++|.+++.+|..++.+++|++|+|++|.+.|.+|..++.+++|+.|+|++|++++.+|..++++++|++|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            56777788888777777777788888888888888777777777888888888888888877777777888888888888


Q ss_pred             CCCCCCCcccccCC-cCCCEEeCcCCC
Q 026163          215 NSLVGNIPPTLGHL-TQLTTLAMSNKV  240 (242)
Q Consensus       215 N~l~~~~p~~l~~l-~~L~~L~ls~N~  240 (242)
                      |.++|.+|..++.. .++..+++.+|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            88877777766653 355677777664

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.45  E-value=3.6e-14  Score=118.45  Aligned_cols=158  Identities=23%  Similarity=0.262  Sum_probs=101.4

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccC-ccCCCCCChhccCC--
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPS-SRLTGIIPSEMGRL--  156 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l--  156 (242)
                      ...+.|+|..|   .+ ..||+..|+.+++|++|||+.|+ ++..-|+.|.+++++..|-+.+ |+|+....+.|+++  
T Consensus        67 ~~tveirLdqN---~I-~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s  141 (498)
T KOG4237|consen   67 PETVEIRLDQN---QI-SSIPPGAFKTLHRLRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS  141 (498)
T ss_pred             CcceEEEeccC---Cc-ccCChhhccchhhhceecccccc-hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence            46788888775   44 45768999999999999999655 4556677888888776666555 66653222222222  


Q ss_pred             ----------------------cCCcEEEcccCcCCCC------------------------------------------
Q 026163          157 ----------------------RNLVRLDLSDNYIGGY------------------------------------------  172 (242)
Q Consensus       157 ----------------------~~L~~L~Ls~N~l~~~------------------------------------------  172 (242)
                                            +++..|.+.+|.+...                                          
T Consensus       142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets  221 (498)
T KOG4237|consen  142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS  221 (498)
T ss_pred             HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence                                  2222222222221100                                          


Q ss_pred             -------------------------------------------CC-cCcCCCCCCCEEEeecCCCccccccccCCCCCCc
Q 026163          173 -------------------------------------------IP-PTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLK  208 (242)
Q Consensus       173 -------------------------------------------~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  208 (242)
                                                                 .| ..|.++++|+.|+|++|++++.-+..|....+++
T Consensus       222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~  301 (498)
T KOG4237|consen  222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ  301 (498)
T ss_pred             cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence                                                       00 1235667788888888888877677777777777


Q ss_pred             EEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163          209 ILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       209 ~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      .|.|..|++...-...|.++..|+.|+|.+|+||
T Consensus       302 eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it  335 (498)
T KOG4237|consen  302 ELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT  335 (498)
T ss_pred             hhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence            7777777776544466677777777777777764

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.45  E-value=3.2e-15  Score=125.05  Aligned_cols=152  Identities=30%  Similarity=0.385  Sum_probs=105.3

Q ss_pred             CeEEEEecccCCCCceeeeCCCCcCCCCCCCE-EEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163           81 SVIRVSLLWYENDNMKGELGRFNFSCFPNLKS-FKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL  159 (242)
Q Consensus        81 ~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~-L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  159 (242)
                      -|+.++++.+   .+. ++ |..+..+..+.+ +.++ ++.. +.+|..+..+++|..|++++|-+. .+|..++.+..|
T Consensus       389 ~Vt~VnfskN---qL~-el-Pk~L~~lkelvT~l~ls-nn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~L  460 (565)
T KOG0472|consen  389 IVTSVNFSKN---QLC-EL-PKRLVELKELVTDLVLS-NNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRL  460 (565)
T ss_pred             ceEEEecccc---hHh-hh-hhhhHHHHHHHHHHHhh-cCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhh
Confidence            3677777765   322 23 333333333322 3444 3332 456666777888888888877776 677777788788


Q ss_pred             cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCC
Q 026163          160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNK  239 (242)
Q Consensus       160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N  239 (242)
                      |.|+++.|+|. ..|+.+..+..++.+-.++|++....|..+.++.+|..||+.+|.+. .+|+.++++++|++|++.+|
T Consensus       461 q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gN  538 (565)
T KOG0472|consen  461 QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGN  538 (565)
T ss_pred             heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCC
Confidence            88888888877 77777777777777777777877655655778888888888888887 67777888888888888888


Q ss_pred             CCC
Q 026163          240 VAI  242 (242)
Q Consensus       240 ~lt  242 (242)
                      +|.
T Consensus       539 pfr  541 (565)
T KOG0472|consen  539 PFR  541 (565)
T ss_pred             ccC
Confidence            763

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.36  E-value=8.6e-15  Score=122.52  Aligned_cols=111  Identities=31%  Similarity=0.514  Sum_probs=55.0

Q ss_pred             CchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcC-CCCCCCEEEeecCCCccccccccCC
Q 026163          125 IPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLG-RLSKLKILNLSSNFLVGNIPLTLCH  203 (242)
Q Consensus       125 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~  203 (242)
                      +|+.++.+.+|+.|++..|++. .+| .|.++..|++++++.|+|. .+|.... +++++..||+.+|+++ ..|..+..
T Consensus       198 lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl  273 (565)
T KOG0472|consen  198 LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL  273 (565)
T ss_pred             CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHH
Confidence            3433444444444444444443 233 3334444444444444443 3333322 4555566666666665 45555555


Q ss_pred             CCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163          204 LSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       204 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l  241 (242)
                      +.+|++||+++|.|+ ..|..++++ .|+.|-+.+|++
T Consensus       274 LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  274 LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCch
Confidence            556666666666665 345555665 566666665553

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.36  E-value=1.3e-13  Score=116.27  Aligned_cols=139  Identities=23%  Similarity=0.284  Sum_probs=76.0

Q ss_pred             cCCC-CCCCEEEecCCCcccc---cCchhhhcCCCCCEEeccCccCCCC----CChhccCCcCCcEEEcccCcCCCC---
Q 026163          104 FSCF-PNLKSFKIHSNYLLSG---SIPSEITALSMLQTLELPSSRLTGI----IPSEMGRLRNLVRLDLSDNYIGGY---  172 (242)
Q Consensus       104 ~~~l-~~L~~L~l~~~~~~~~---~~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~---  172 (242)
                      +..+ ++|+.|++++|++..+   .++..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++.   
T Consensus       132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  211 (319)
T cd00116         132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS  211 (319)
T ss_pred             HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence            3344 5666666665554211   1223344556666666666666532    222334445677777777766532   


Q ss_pred             -CCcCcCCCCCCCEEEeecCCCccccccccC-----CCCCCcEEEcccCCCCC----CCcccccCCcCCCEEeCcCCCCC
Q 026163          173 -IPPTLGRLSKLKILNLSSNFLVGNIPLTLC-----HLSKLKILNLSSNSLVG----NIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       173 -~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-----~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                       ++..+..+++|++|++++|.+++.....+.     ..+.|++|++++|.++.    .+...+..+++|+++++++|.++
T Consensus       212 ~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         212 ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence             223345566677777777766642221111     23567777777777652    22344555567777777777663

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.35  E-value=2.7e-13  Score=104.04  Aligned_cols=127  Identities=27%  Similarity=0.360  Sum_probs=49.7

Q ss_pred             cCCCCCCCEEEecCCCcccccCchhhh-cCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCc-CCCC
Q 026163          104 FSCFPNLKSFKIHSNYLLSGSIPSEIT-ALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTL-GRLS  181 (242)
Q Consensus       104 ~~~l~~L~~L~l~~~~~~~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~  181 (242)
                      +.+..++++|++.+|.+  ..+. .+. .+.+|+.|++++|.++. + +.+..+++|++|++++|+|+ .+.+.+ ..++
T Consensus        15 ~~n~~~~~~L~L~~n~I--~~Ie-~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp   88 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQI--STIE-NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLP   88 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-T
T ss_pred             ccccccccccccccccc--cccc-chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-ccccchHHhCC
Confidence            34455678899987766  2333 344 57889999999999984 3 35778899999999999998 444444 3688


Q ss_pred             CCCEEEeecCCCccc-cccccCCCCCCcEEEcccCCCCCCCc---ccccCCcCCCEEeC
Q 026163          182 KLKILNLSSNFLVGN-IPLTLCHLSKLKILNLSSNSLVGNIP---PTLGHLTQLTTLAM  236 (242)
Q Consensus       182 ~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~l  236 (242)
                      +|++|++++|+|... .-..+..+++|++|++.+|+++...-   ..+..+|+|+.||-
T Consensus        89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            999999999998752 12456778999999999999874321   24567888888874

>PLN03210 Resistant to P

Probab=99.35  E-value=7.7e-12  Score=121.88  Aligned_cols=82  Identities=26%  Similarity=0.345  Sum_probs=48.4

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL  159 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  159 (242)
                      .+++.++++++   ...+.+  +.+..+++|++|++++|..+ ..+|..+..+++|++|++++|.....+|..+ ++++|
T Consensus       634 ~~Lk~L~Ls~~---~~l~~i--p~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL  706 (1153)
T PLN03210        634 TGLRNIDLRGS---KNLKEI--PDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL  706 (1153)
T ss_pred             CCCCEEECCCC---CCcCcC--CccccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence            45566666554   333444  24666777777777765544 3567677777777777777764444555543 45555


Q ss_pred             cEEEcccCc
Q 026163          160 VRLDLSDNY  168 (242)
Q Consensus       160 ~~L~Ls~N~  168 (242)
                      ++|++++|.
T Consensus       707 ~~L~Lsgc~  715 (1153)
T PLN03210        707 YRLNLSGCS  715 (1153)
T ss_pred             CEEeCCCCC
Confidence            555555543

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.34  E-value=2.3e-13  Score=114.72  Aligned_cols=160  Identities=24%  Similarity=0.300  Sum_probs=114.8

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCC---CCCCEEEecCCCcccc---cCchhhhcC-CCCCEEeccCccCCCC---
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCF---PNLKSFKIHSNYLLSG---SIPSEITAL-SMLQTLELPSSRLTGI---  148 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l---~~L~~L~l~~~~~~~~---~~p~~~~~l-~~L~~L~l~~n~l~~~---  148 (242)
                      ..+++.|+++++   .+.+.. +..+..+   ++|++|++++|+....   .+...+..+ ++|++|++++|.+++.   
T Consensus        80 ~~~L~~L~l~~~---~~~~~~-~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  155 (319)
T cd00116          80 GCGLQELDLSDN---ALGPDG-CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE  155 (319)
T ss_pred             cCceeEEEccCC---CCChhH-HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence            568999999887   665433 3334344   4499999997765321   223345666 8999999999999843   


Q ss_pred             -CChhccCCcCCcEEEcccCcCCCC----CCcCcCCCCCCCEEEeecCCCccc----cccccCCCCCCcEEEcccCCCCC
Q 026163          149 -IPSEMGRLRNLVRLDLSDNYIGGY----IPPTLGRLSKLKILNLSSNFLVGN----IPLTLCHLSKLKILNLSSNSLVG  219 (242)
Q Consensus       149 -~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~  219 (242)
                       ++..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++
T Consensus       156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence             334566778999999999998842    233455667999999999998753    34456778999999999999886


Q ss_pred             CCccccc-----CCcCCCEEeCcCCCCC
Q 026163          220 NIPPTLG-----HLTQLTTLAMSNKVAI  242 (242)
Q Consensus       220 ~~p~~l~-----~l~~L~~L~ls~N~lt  242 (242)
                      .....+.     ..++|++|++++|.++
T Consensus       236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         236 AGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHHHHHHHHHhccCCCceEEEccCCCCC
Confidence            3332222     2478999999999874

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.31  E-value=4.1e-12  Score=117.62  Aligned_cols=142  Identities=24%  Similarity=0.396  Sum_probs=81.7

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL  159 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  159 (242)
                      .+++.|+++++   .+. .+ +..+  .++|+.|++++|++  ..+|..+.  ++|++|++++|+++ .+|..+.  ++|
T Consensus       220 ~nL~~L~Ls~N---~Lt-sL-P~~l--~~~L~~L~Ls~N~L--~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL  285 (754)
T PRK15370        220 GNIKTLYANSN---QLT-SI-PATL--PDTIQEMELSINRI--TELPERLP--SALQSLDLFHNKIS-CLPENLP--EEL  285 (754)
T ss_pred             cCCCEEECCCC---ccc-cC-Chhh--hccccEEECcCCcc--CcCChhHh--CCCCEEECcCCccC-ccccccC--CCC
Confidence            46788888776   544 33 2222  23577777776554  34565543  36777777777766 4555443  366


Q ss_pred             cEEEcccCcCCCCCCcCcC-------------------CCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCC
Q 026163          160 VRLDLSDNYIGGYIPPTLG-------------------RLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGN  220 (242)
Q Consensus       160 ~~L~Ls~N~l~~~~p~~~~-------------------~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~  220 (242)
                      ++|++++|+++. +|..+.                   -.++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .
T Consensus       286 ~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~  360 (754)
T PRK15370        286 RYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-V  360 (754)
T ss_pred             cEEECCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-c
Confidence            666666666652 332211                   11356666666666653 444332  56777777777776 4


Q ss_pred             CcccccCCcCCCEEeCcCCCCC
Q 026163          221 IPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       221 ~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      +|..+.  ++|++|++++|+|+
T Consensus       361 LP~~lp--~~L~~LdLs~N~Lt  380 (754)
T PRK15370        361 LPETLP--PTITTLDVSRNALT  380 (754)
T ss_pred             CChhhc--CCcCEEECCCCcCC
Confidence            554442  46777777777653

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.30  E-value=6.5e-12  Score=116.29  Aligned_cols=143  Identities=29%  Similarity=0.401  Sum_probs=103.6

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN  158 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  158 (242)
                      ...++.|+++++   .+. .+ +..+  .++|++|++++|++  ..+|..+.  ++|+.|++++|++. .+|..+.  .+
T Consensus       198 p~~L~~L~Ls~N---~Lt-sL-P~~l--~~nL~~L~Ls~N~L--tsLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~  263 (754)
T PRK15370        198 PEQITTLILDNN---ELK-SL-PENL--QGNIKTLYANSNQL--TSIPATLP--DTIQEMELSINRIT-ELPERLP--SA  263 (754)
T ss_pred             ccCCcEEEecCC---CCC-cC-Chhh--ccCCCEEECCCCcc--ccCChhhh--ccccEEECcCCccC-cCChhHh--CC
Confidence            346889999888   666 34 3333  35899999997765  35777553  47999999999998 6777664  58


Q ss_pred             CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccC-------------------CCCCCcEEEcccCCCCC
Q 026163          159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLC-------------------HLSKLKILNLSSNSLVG  219 (242)
Q Consensus       159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-------------------~l~~L~~L~L~~N~l~~  219 (242)
                      |++|++++|+++ .+|..+.  ++|+.|++++|++++ +|..+.                   -.++|+.|++++|.+++
T Consensus       264 L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~  339 (754)
T PRK15370        264 LQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS  339 (754)
T ss_pred             CCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc
Confidence            999999999999 5777654  589999999999884 443221                   11456667777776663


Q ss_pred             CCcccccCCcCCCEEeCcCCCCC
Q 026163          220 NIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       220 ~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                       +|..+.  ++|+.|++++|+|+
T Consensus       340 -LP~~l~--~sL~~L~Ls~N~L~  359 (754)
T PRK15370        340 -LPASLP--PELQVLDVSKNQIT  359 (754)
T ss_pred             -CChhhc--CcccEEECCCCCCC
Confidence             554442  57888888888764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.30  E-value=1.8e-12  Score=99.46  Aligned_cols=109  Identities=30%  Similarity=0.387  Sum_probs=42.6

Q ss_pred             hhcCCCCCEEeccCccCCCCCChhcc-CCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCcccccccc-CCCCC
Q 026163          129 ITALSMLQTLELPSSRLTGIIPSEMG-RLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTL-CHLSK  206 (242)
Q Consensus       129 ~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~  206 (242)
                      +.+..++++|++.+|.|+. + +.++ .+.+|+.|++++|.|+. + +.+..+++|++|++++|+++. +...+ ..+|+
T Consensus        15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred             ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence            4566689999999999983 3 3455 58899999999999983 3 368889999999999999995 44344 46899


Q ss_pred             CcEEEcccCCCCCCCc-ccccCCcCCCEEeCcCCCCC
Q 026163          207 LKILNLSSNSLVGNIP-PTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       207 L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~ls~N~lt  242 (242)
                      |+.|++++|+|...-. ..+..+++|+.|++.+|+++
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            9999999999975322 56778999999999999874

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.29  E-value=9.6e-12  Score=114.92  Aligned_cols=99  Identities=29%  Similarity=0.355  Sum_probs=67.9

Q ss_pred             CCCEEeccCccCCCCCChhccC-----------------CcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccc
Q 026163          134 MLQTLELPSSRLTGIIPSEMGR-----------------LRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGN  196 (242)
Q Consensus       134 ~L~~L~l~~n~l~~~~p~~~~~-----------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  196 (242)
                      +|++|++++|++++ +|.....                 ..+|+.|++++|+++ .+|..   .++|+.|++++|++++ 
T Consensus       343 ~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-  416 (788)
T PRK15387        343 GLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-  416 (788)
T ss_pred             ccceEecCCCccCC-CCCCCcccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-
Confidence            56777777777663 3322111                 134666677777666 34432   2467777888887773 


Q ss_pred             cccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163          197 IPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       197 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      +|..   ..+|+.|++++|+++ .+|..+.++++|+.|++++|+|+
T Consensus       417 IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        417 LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence            5543   246788888999988 68888999999999999999985

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.28  E-value=1.8e-13  Score=124.59  Aligned_cols=129  Identities=29%  Similarity=0.458  Sum_probs=101.3

Q ss_pred             CCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCCh-hccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCE
Q 026163          107 FPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPS-EMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKI  185 (242)
Q Consensus       107 l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  185 (242)
                      ++.|+.|++.+|......+| .+.++++|++|+|++|++. .+|+ .+.+++.|++|++|+|+++ .+|..+.+++.|++
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p-~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~t  434 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFP-VLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHT  434 (1081)
T ss_pred             hHHHHHHHHhcCcccccchh-hhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHH
Confidence            34567777775544443444 4788899999999999998 4554 5688999999999999998 88888999999999


Q ss_pred             EEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCC
Q 026163          186 LNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKV  240 (242)
Q Consensus       186 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~  240 (242)
                      |...+|++. ..| .+..++.|+.+|++.|.++...-..-...++|++||+++|.
T Consensus       435 L~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  435 LRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             HhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            999999988 677 78889999999999999875433333333789999999985

>PLN03210 Resistant to P

Probab=99.25  E-value=6.3e-11  Score=115.59  Aligned_cols=152  Identities=22%  Similarity=0.295  Sum_probs=100.5

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL  159 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  159 (242)
                      .+++.|++.++   .+. .+ +..+..+++|++|++++++.+ +.+|. +..+++|++|++++|.....+|..+.++++|
T Consensus       611 ~~L~~L~L~~s---~l~-~L-~~~~~~l~~Lk~L~Ls~~~~l-~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L  683 (1153)
T PLN03210        611 ENLVKLQMQGS---KLE-KL-WDGVHSLTGLRNIDLRGSKNL-KEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKL  683 (1153)
T ss_pred             cCCcEEECcCc---ccc-cc-ccccccCCCCCEEECCCCCCc-CcCCc-cccCCcccEEEecCCCCccccchhhhccCCC
Confidence            34556666554   433 33 455678889999999866544 45664 7788999999999987666889999999999


Q ss_pred             cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCcc--------------------cccccc------------------
Q 026163          160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVG--------------------NIPLTL------------------  201 (242)
Q Consensus       160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--------------------~~p~~l------------------  201 (242)
                      ++|++++|.....+|..+ ++++|++|++++|....                    .+|..+                  
T Consensus       684 ~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l  762 (1153)
T PLN03210        684 EDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKL  762 (1153)
T ss_pred             CEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhc
Confidence            999999875444666544 45555555555543221                    122111                  


Q ss_pred             ------------CCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCC
Q 026163          202 ------------CHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNK  239 (242)
Q Consensus       202 ------------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N  239 (242)
                                  ...++|+.|++++|...+.+|..++++++|+.|++++|
T Consensus       763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C  812 (1153)
T PLN03210        763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENC  812 (1153)
T ss_pred             cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCC
Confidence                        01235666677777666667777777777888877765

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.24  E-value=6.2e-13  Score=121.19  Aligned_cols=150  Identities=26%  Similarity=0.313  Sum_probs=119.3

Q ss_pred             CeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchh-hhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163           81 SVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSE-ITALSMLQTLELPSSRLTGIIPSEMGRLRNL  159 (242)
Q Consensus        81 ~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~-~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  159 (242)
                      .++.|.+.+|   .+.... .+.+.++++|+.|+|++|.+  +.+|+. +.++..|++|++|+|+++ .+|..+..+..|
T Consensus       360 ~Lq~LylanN---~Ltd~c-~p~l~~~~hLKVLhLsyNrL--~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L  432 (1081)
T KOG0618|consen  360 ALQELYLANN---HLTDSC-FPVLVNFKHLKVLHLSYNRL--NSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRL  432 (1081)
T ss_pred             HHHHHHHhcC---cccccc-hhhhccccceeeeeeccccc--ccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhh
Confidence            3555666666   777776 78899999999999998776  567875 788999999999999999 789999999999


Q ss_pred             cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCC
Q 026163          160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNK  239 (242)
Q Consensus       160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N  239 (242)
                      ++|....|++. .+| .+..++.|+.+|++.|.++...-......++|++||+++|.-...--+.+..++++...+++-|
T Consensus       433 ~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  433 HTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             HHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            99999999998 778 8999999999999999998643323333489999999999843333345555666665555444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.24  E-value=5e-13  Score=116.28  Aligned_cols=134  Identities=31%  Similarity=0.501  Sum_probs=106.0

Q ss_pred             CCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCC
Q 026163          101 RFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRL  180 (242)
Q Consensus       101 ~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  180 (242)
                      +..+.++..|++++++.|.+  ..+|..+..++ |+.|.+++|+++ .+|..++...+|..||.+.|++. .+|..++.+
T Consensus       114 p~~i~~L~~lt~l~ls~Nql--S~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l  188 (722)
T KOG0532|consen  114 PEAICNLEALTFLDLSSNQL--SHLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYL  188 (722)
T ss_pred             chhhhhhhHHHHhhhccchh--hcCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhH
Confidence            66777788888888886655  45676666655 788888888887 77788887788888888888887 777788888


Q ss_pred             CCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163          181 SKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       181 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      .+|+.|++..|++. .+|..+..++ |..||++.|++. .+|-.|.+++.|++|-|.+|.++
T Consensus       189 ~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  189 TSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             HHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            88888888888887 5677777554 888999999988 78888889999999999888764

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.22  E-value=7.7e-13  Score=107.41  Aligned_cols=133  Identities=24%  Similarity=0.284  Sum_probs=107.3

Q ss_pred             CcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCC
Q 026163          103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSK  182 (242)
Q Consensus       103 ~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  182 (242)
                      .....+.|+++|+++|.+  ..+.++..-.|.++.|++++|.+. .+ ..+..+++|+.||+++|.++ .+-.+-.++.+
T Consensus       279 ~~dTWq~LtelDLS~N~I--~~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN  353 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLI--TQIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGN  353 (490)
T ss_pred             ecchHhhhhhccccccch--hhhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcC
Confidence            344567899999998776  567777778899999999999998 33 34888999999999999987 55555567889


Q ss_pred             CCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCC-cccccCCcCCCEEeCcCCCCC
Q 026163          183 LKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNI-PPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       183 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      +++|.|++|.+..  -..++++-+|..||+++|+|...- -..++++|.|+++.+.+|++.
T Consensus       354 IKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  354 IKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             EeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            9999999998873  246778888999999999997421 257889999999999999874

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.18  E-value=1.3e-10  Score=107.61  Aligned_cols=75  Identities=28%  Similarity=0.364  Sum_probs=39.0

Q ss_pred             CCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEE
Q 026163          108 PNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILN  187 (242)
Q Consensus       108 ~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  187 (242)
                      ++|++|++++|++ + .+|..   .++|+.|++++|.++ .+|..   ..+|+.|++++|+++ .+|.   ..++|+.|+
T Consensus       242 ~~Lk~LdLs~N~L-t-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~Ld  308 (788)
T PRK15387        242 PELRTLEVSGNQL-T-SLPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELS  308 (788)
T ss_pred             CCCcEEEecCCcc-C-cccCc---ccccceeeccCCchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeE
Confidence            4555555554433 1 23321   234555555555554 23321   234556666666666 3443   235677777


Q ss_pred             eecCCCcc
Q 026163          188 LSSNFLVG  195 (242)
Q Consensus       188 L~~N~l~~  195 (242)
                      +++|++++
T Consensus       309 LS~N~L~~  316 (788)
T PRK15387        309 VSDNQLAS  316 (788)
T ss_pred             CCCCcccc
Confidence            77777774

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.12  E-value=4.4e-11  Score=75.95  Aligned_cols=59  Identities=34%  Similarity=0.452  Sum_probs=28.5

Q ss_pred             CCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCC
Q 026163          182 KLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKV  240 (242)
Q Consensus       182 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~  240 (242)
                      +|++|++++|+++...+..|..+++|++|++++|.++...+..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34445555554443333344445555555555555543333444555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.11  E-value=6.9e-11  Score=75.04  Aligned_cols=60  Identities=38%  Similarity=0.538  Sum_probs=34.1

Q ss_pred             CCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCC
Q 026163          158 NLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSL  217 (242)
Q Consensus       158 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l  217 (242)
                      +|++|++++|+++...+..|..+++|++|++++|.++...|..|..+++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455555555555544444555566666666666666554455556666666666666543

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.10  E-value=1.2e-12  Score=113.91  Aligned_cols=148  Identities=29%  Similarity=0.396  Sum_probs=123.3

Q ss_pred             eEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcE
Q 026163           82 VIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVR  161 (242)
Q Consensus        82 v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~  161 (242)
                      .+..+++.+   .+. ++ +..++.|..|+.+.+..|.+  -.+|..+.++..|+++|++.|+++ .+|..++.++ |+.
T Consensus        77 t~~aDlsrN---R~~-el-p~~~~~f~~Le~liLy~n~~--r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv  147 (722)
T KOG0532|consen   77 TVFADLSRN---RFS-EL-PEEACAFVSLESLILYHNCI--RTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV  147 (722)
T ss_pred             hhhhhcccc---ccc-cC-chHHHHHHHHHHHHHHhccc--eecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence            344555554   333 44 66777777888888876666  568888999999999999999999 7888887764 899


Q ss_pred             EEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163          162 LDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       162 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l  241 (242)
                      |-+++|+++ .+|+.++..+.|..|+.+.|.+. .+|..++.+.+|+.|.+..|.+. .+|+.+..++ |..||+++|++
T Consensus       148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNki  223 (722)
T KOG0532|consen  148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKI  223 (722)
T ss_pred             EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCce
Confidence            999999998 88999999999999999999998 67889999999999999999998 5777777765 99999999997


Q ss_pred             C
Q 026163          242 I  242 (242)
Q Consensus       242 t  242 (242)
                      +
T Consensus       224 s  224 (722)
T KOG0532|consen  224 S  224 (722)
T ss_pred             e
Confidence            4

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.10  E-value=5.5e-11  Score=103.47  Aligned_cols=149  Identities=34%  Similarity=0.495  Sum_probs=89.8

Q ss_pred             CeEEEEecccCCCCceeeeCCCCcCCCC-CCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163           81 SVIRVSLLWYENDNMKGELGRFNFSCFP-NLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL  159 (242)
Q Consensus        81 ~v~~L~l~~~~~~~~~~~i~~~~~~~l~-~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  159 (242)
                      .++.+++.++   .+. .+ +.....+. +|+.|++++|.+  ..+|..+..+++|+.|++++|+++ .+|...+..+.|
T Consensus       117 ~l~~L~l~~n---~i~-~i-~~~~~~~~~nL~~L~l~~N~i--~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L  188 (394)
T COG4886         117 NLTSLDLDNN---NIT-DI-PPLIGLLKSNLKELDLSDNKI--ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNL  188 (394)
T ss_pred             ceeEEecCCc---ccc-cC-ccccccchhhcccccccccch--hhhhhhhhccccccccccCCchhh-hhhhhhhhhhhh
Confidence            4666666655   322 23 33344443 778888876665  445556777888888888888877 555555567777


Q ss_pred             cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCC-----------------------CccccccccCCCCCCcEEEcccCC
Q 026163          160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNF-----------------------LVGNIPLTLCHLSKLKILNLSSNS  216 (242)
Q Consensus       160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-----------------------l~~~~p~~l~~l~~L~~L~L~~N~  216 (242)
                      +.|++++|+++ .+|..+.....|+++.+++|.                       +. ..+..++.++.+++|++++|.
T Consensus       189 ~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~  266 (394)
T COG4886         189 NNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQ  266 (394)
T ss_pred             hheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccchhccccccceecccccc
Confidence            77777777776 555544444456666666663                       22 113344555566666666666


Q ss_pred             CCCCCcccccCCcCCCEEeCcCCCC
Q 026163          217 LVGNIPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       217 l~~~~p~~l~~l~~L~~L~ls~N~l  241 (242)
                      ++ .++. ++.+.+++.|++++|.+
T Consensus       267 i~-~i~~-~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         267 IS-SISS-LGSLTNLRELDLSGNSL  289 (394)
T ss_pred             cc-cccc-ccccCccCEEeccCccc
Confidence            65 2333 56666666666666654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.09  E-value=5.9e-11  Score=103.27  Aligned_cols=133  Identities=32%  Similarity=0.503  Sum_probs=97.5

Q ss_pred             CeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCc
Q 026163           81 SVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLV  160 (242)
Q Consensus        81 ~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~  160 (242)
                      +++.++++++   .+.. + +..+..+++|+.|++++|++  ..+|......+.|+.|++++|+++ .+|........|+
T Consensus       141 nL~~L~l~~N---~i~~-l-~~~~~~l~~L~~L~l~~N~l--~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~  212 (394)
T COG4886         141 NLKELDLSDN---KIES-L-PSPLRNLPNLKNLDLSFNDL--SDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALE  212 (394)
T ss_pred             hccccccccc---chhh-h-hhhhhccccccccccCCchh--hhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhh
Confidence            6777887776   4332 2 24678889999999997776  456665557888888888888887 5565544445566


Q ss_pred             EEEcccC-----------------------cCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCC
Q 026163          161 RLDLSDN-----------------------YIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSL  217 (242)
Q Consensus       161 ~L~Ls~N-----------------------~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l  217 (242)
                      ++.+++|                       ++. ..+..++.++++++|++++|.++. ++. ++.+.+++.|++++|.+
T Consensus       213 ~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         213 ELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSL  289 (394)
T ss_pred             hhhhcCCcceecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCEEeccCccc
Confidence            6666666                       332 224567788899999999999994 444 88999999999999999


Q ss_pred             CCCCccc
Q 026163          218 VGNIPPT  224 (242)
Q Consensus       218 ~~~~p~~  224 (242)
                      ....|..
T Consensus       290 ~~~~~~~  296 (394)
T COG4886         290 SNALPLI  296 (394)
T ss_pred             cccchhh
Confidence            8665543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=7.3e-11  Score=100.01  Aligned_cols=134  Identities=25%  Similarity=0.248  Sum_probs=54.9

Q ss_pred             CCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCC--cCcCCCCCCC
Q 026163          107 FPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIP--PTLGRLSKLK  184 (242)
Q Consensus       107 l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~  184 (242)
                      +++|++|.++.|++....+......+|.|+.|++.+|............+..|+.|||++|++- ..+  ...+.++.|+
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchh
Confidence            3344444444443332223333334444444444444211111112223344555555555543 222  2244455555


Q ss_pred             EEEeecCCCccc-cccc-----cCCCCCCcEEEcccCCCCCCC-cccccCCcCCCEEeCcCCCC
Q 026163          185 ILNLSSNFLVGN-IPLT-----LCHLSKLKILNLSSNSLVGNI-PPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       185 ~L~L~~N~l~~~-~p~~-----l~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~ls~N~l  241 (242)
                      .|+++.+.+... .|+.     ...+++|++|++..|++.... -..+..+++|+.|.+..|.|
T Consensus       275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL  338 (505)
T ss_pred             hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence            555555555431 1111     233455555555555553211 12233344445554444443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=7.1e-11  Score=100.10  Aligned_cols=137  Identities=26%  Similarity=0.202  Sum_probs=81.9

Q ss_pred             CCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCC-CChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCC
Q 026163          105 SCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGI-IPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKL  183 (242)
Q Consensus       105 ~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  183 (242)
                      ..||+|+.|+++.|......-...-..+++|+.|.++.|.++-. +......+|+|+.|++..|...........-+..|
T Consensus       169 eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L  248 (505)
T KOG3207|consen  169 EQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL  248 (505)
T ss_pred             HhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH
Confidence            34555555555544432211111112345555555555555511 11223456777777777774322333334456789


Q ss_pred             CEEEeecCCCcccc-ccccCCCCCCcEEEcccCCCCCC-Cccc-----ccCCcCCCEEeCcCCCC
Q 026163          184 KILNLSSNFLVGNI-PLTLCHLSKLKILNLSSNSLVGN-IPPT-----LGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       184 ~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~-~p~~-----l~~l~~L~~L~ls~N~l  241 (242)
                      +.|+|++|.+.... -...+.++.|+.|+++.+.+... .|+.     ...+++|++|+++.|+|
T Consensus       249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             hhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            99999999887432 13567889999999999998742 2332     35678999999999987

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.94  E-value=1.3e-10  Score=94.70  Aligned_cols=104  Identities=29%  Similarity=0.339  Sum_probs=82.4

Q ss_pred             CCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEE
Q 026163          132 LSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILN  211 (242)
Q Consensus       132 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  211 (242)
                      ...|+++|+++|.|+ .+...+.-.|.++.|++++|.+. .+ +.+..+++|+.|+|++|.++ .+...-.++-+.+.|.
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK  358 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence            345888999999888 67777777889999999999987 33 34888889999999999887 4444555677888899


Q ss_pred             cccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163          212 LSSNSLVGNIPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       212 L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l  241 (242)
                      +++|.+..  -..++++-+|..||+++|+|
T Consensus       359 La~N~iE~--LSGL~KLYSLvnLDl~~N~I  386 (490)
T KOG1259|consen  359 LAQNKIET--LSGLRKLYSLVNLDLSSNQI  386 (490)
T ss_pred             hhhhhHhh--hhhhHhhhhheeccccccch
Confidence            99998863  34577888899999999987

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.87  E-value=6.7e-11  Score=99.18  Aligned_cols=130  Identities=26%  Similarity=0.338  Sum_probs=111.0

Q ss_pred             CCCEEEecCCCcccccCch-hhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEccc-CcCCCCCCcCcCCCCCCCEE
Q 026163          109 NLKSFKIHSNYLLSGSIPS-EITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSD-NYIGGYIPPTLGRLSKLKIL  186 (242)
Q Consensus       109 ~L~~L~l~~~~~~~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L  186 (242)
                      .-..++|..|.+  ..+|+ .|+.+++|+.|||++|+|+.+-|+.|.+++++..|-+-+ |+|+......|.++..++.|
T Consensus        68 ~tveirLdqN~I--~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   68 ETVEIRLDQNQI--SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             cceEEEeccCCc--ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            456788886766  45654 599999999999999999999999999999988877655 99996666779999999999


Q ss_pred             EeecCCCccccccccCCCCCCcEEEcccCCCCCCCcc-cccCCcCCCEEeCcCCCC
Q 026163          187 NLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPP-TLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       187 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~ls~N~l  241 (242)
                      .+.-|++.-...+.|..+++|..|.+.+|.+. .++. .+..+..++.+.+..|.+
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~  200 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPF  200 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcc
Confidence            99999999777778999999999999999998 5554 788899999999888874

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.66  E-value=2.2e-08  Score=94.54  Aligned_cols=129  Identities=31%  Similarity=0.425  Sum_probs=90.7

Q ss_pred             CCCCCEEEecCCCcccccCc-hhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCE
Q 026163          107 FPNLKSFKIHSNYLLSGSIP-SEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKI  185 (242)
Q Consensus       107 l~~L~~L~l~~~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  185 (242)
                      .++|++|-+..|...-..++ ..|..++.|++||+++|.--+.+|..++++-+|++|++++..+. .+|..++++..|.+
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY  622 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence            34677887776542112333 34677888999999887766788888888888999999888888 88888888888889


Q ss_pred             EEeecCCCccccccccCCCCCCcEEEcccCCCC--CCCcccccCCcCCCEEeC
Q 026163          186 LNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV--GNIPPTLGHLTQLTTLAM  236 (242)
Q Consensus       186 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~l  236 (242)
                      |++..+.-...+|.....+++|++|.+..-...  ...-..+..+..|+.+..
T Consensus       623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            888887765566666677888888887655422  122233445555555443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.65  E-value=3.8e-10  Score=101.18  Aligned_cols=126  Identities=28%  Similarity=0.298  Sum_probs=91.7

Q ss_pred             CCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEe
Q 026163          109 NLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNL  188 (242)
Q Consensus       109 ~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  188 (242)
                      .|.+.+++.|..  -.+...+.-++.++.|+|++|+++..  +.+..+++|++|||++|.++ .+|..-..-..|+.|.+
T Consensus       165 ~L~~a~fsyN~L--~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRL--VLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhH--HhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeee
Confidence            345555554433  23445566678899999999999854  37788899999999999998 55543222234999999


Q ss_pred             ecCCCccccccccCCCCCCcEEEcccCCCCCCCc-ccccCCcCCCEEeCcCCCC
Q 026163          189 SSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP-PTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       189 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~ls~N~l  241 (242)
                      .+|.++..  ..+.++.+|+.||+++|-+.+.-- ..++.+..|+.|+|.+|++
T Consensus       240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            99988832  356788899999999998875322 3466778889999999976

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.58  E-value=2.2e-09  Score=96.43  Aligned_cols=102  Identities=32%  Similarity=0.376  Sum_probs=82.6

Q ss_pred             CCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcc
Q 026163          134 MLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLS  213 (242)
Q Consensus       134 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~  213 (242)
                      .|...+.++|.+. .+...+.-++.++.|+|++|+++..  +.+..++.|++|||++|.++ .+|..-..-.+|+.|.++
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence            4777788888887 6667777789999999999999844  37889999999999999998 566432222359999999


Q ss_pred             cCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163          214 SNSLVGNIPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       214 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l  241 (242)
                      +|.++..  ..+.++++|+.||+++|-|
T Consensus       241 nN~l~tL--~gie~LksL~~LDlsyNll  266 (1096)
T KOG1859|consen  241 NNALTTL--RGIENLKSLYGLDLSYNLL  266 (1096)
T ss_pred             ccHHHhh--hhHHhhhhhhccchhHhhh
Confidence            9999732  4578999999999999965

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.56  E-value=2.1e-09  Score=77.97  Aligned_cols=87  Identities=23%  Similarity=0.315  Sum_probs=49.2

Q ss_pred             cCCCCCCCEEEecCCCcccccCchhhh-cCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCC
Q 026163          104 FSCFPNLKSFKIHSNYLLSGSIPSEIT-ALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSK  182 (242)
Q Consensus       104 ~~~l~~L~~L~l~~~~~~~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  182 (242)
                      +....+|+..++++|.+  ..+|+.|. .++.++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|+-+..+.+
T Consensus        49 l~~~~el~~i~ls~N~f--k~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~  124 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNGF--KKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIK  124 (177)
T ss_pred             HhCCceEEEEecccchh--hhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHh
Confidence            33444555556664444  34555443 3445666666666666 45555666666666666666665 44555555666


Q ss_pred             CCEEEeecCCCc
Q 026163          183 LKILNLSSNFLV  194 (242)
Q Consensus       183 L~~L~L~~N~l~  194 (242)
                      +..|+..+|.+.
T Consensus       125 l~~Lds~~na~~  136 (177)
T KOG4579|consen  125 LDMLDSPENARA  136 (177)
T ss_pred             HHHhcCCCCccc
Confidence            666666666554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.52  E-value=5.5e-08  Score=91.92  Aligned_cols=131  Identities=27%  Similarity=0.352  Sum_probs=105.7

Q ss_pred             cCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCcc--CCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCC
Q 026163          104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSR--LTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLS  181 (242)
Q Consensus       104 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~--l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  181 (242)
                      .......+...+.++..  ..++.. ...++|++|-+..|.  +....+..|..++.|++||+++|.-.+.+|..++.+-
T Consensus       519 ~~~~~~~rr~s~~~~~~--~~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li  595 (889)
T KOG4658|consen  519 VKSWNSVRRMSLMNNKI--EHIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV  595 (889)
T ss_pred             ccchhheeEEEEeccch--hhccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence            33446677777775554  233432 345589999999996  5544455678899999999999987779999999999


Q ss_pred             CCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163          182 KLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN  238 (242)
Q Consensus       182 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~  238 (242)
                      +|++|++++..++ .+|..++++.+|.+|++..+.....+|.....+++|++|.+..
T Consensus       596 ~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  596 HLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             hhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence            9999999999999 7999999999999999999987766777777799999998754

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.52  E-value=1.4e-08  Score=89.00  Aligned_cols=108  Identities=31%  Similarity=0.401  Sum_probs=48.3

Q ss_pred             cCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCC
Q 026163          104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKL  183 (242)
Q Consensus       104 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  183 (242)
                      +..+++|+.+++.+|.+  ..+...+..+++|++|++++|.|+..  ..+..++.|+.|++++|.|+.  ...+..+++|
T Consensus        91 l~~~~~l~~l~l~~n~i--~~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L  164 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKI--EKIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISD--ISGLESLKSL  164 (414)
T ss_pred             cccccceeeeeccccch--hhcccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchh--ccCCccchhh
Confidence            44455555555554333  12222234455555555555555432  223344445555555555541  1233334555


Q ss_pred             CEEEeecCCCccccccc-cCCCCCCcEEEcccCCCC
Q 026163          184 KILNLSSNFLVGNIPLT-LCHLSKLKILNLSSNSLV  218 (242)
Q Consensus       184 ~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~  218 (242)
                      +.+++++|++...-+ . ...+.+++.+++.+|.+.
T Consensus       165 ~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  165 KLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIR  199 (414)
T ss_pred             hcccCCcchhhhhhh-hhhhhccchHHHhccCCchh
Confidence            555555555542211 1 244445555555555543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.51  E-value=1.7e-08  Score=88.56  Aligned_cols=107  Identities=35%  Similarity=0.412  Sum_probs=53.2

Q ss_pred             hhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCc
Q 026163          129 ITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLK  208 (242)
Q Consensus       129 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  208 (242)
                      +..+++|+.|++.+|++.. +...+..+++|++|++++|.|+..  ..+..++.|+.|++++|.++. + ..+..++.|+
T Consensus        91 l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~  165 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISD-I-SGLESLKSLK  165 (414)
T ss_pred             cccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchh-c-cCCccchhhh
Confidence            4455555555665555552 222244555556666666655522  234444455555566655552 1 2334455555


Q ss_pred             EEEcccCCCCCCCccc-ccCCcCCCEEeCcCCCC
Q 026163          209 ILNLSSNSLVGNIPPT-LGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       209 ~L~L~~N~l~~~~p~~-l~~l~~L~~L~ls~N~l  241 (242)
                      .+++++|.+...-+ . ...+.+++.+++.+|.+
T Consensus       166 ~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  166 LLDLSYNRIVDIEN-DELSELISLEELDLGGNSI  198 (414)
T ss_pred             cccCCcchhhhhhh-hhhhhccchHHHhccCCch
Confidence            55555555552211 1 34455555555555543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.49  E-value=2.5e-08  Score=82.68  Aligned_cols=89  Identities=20%  Similarity=0.302  Sum_probs=39.7

Q ss_pred             ccCCcCCcEEEcccCcCCCC----CCcCcCCCCCCCEEEeecCCCcccccccc-----CCCCCCcEEEcccCCCCCC---
Q 026163          153 MGRLRNLVRLDLSDNYIGGY----IPPTLGRLSKLKILNLSSNFLVGNIPLTL-----CHLSKLKILNLSSNSLVGN---  220 (242)
Q Consensus       153 ~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-----~~l~~L~~L~L~~N~l~~~---  220 (242)
                      +..+++|+.|||.+|.++..    +...+..+++|+.|++++|.++......+     ...|+|+.+.+.+|.|+..   
T Consensus       209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~  288 (382)
T KOG1909|consen  209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL  288 (382)
T ss_pred             HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH
Confidence            34445555555555554421    12233444455555555555543221111     1235555555555555421   


Q ss_pred             -CcccccCCcCCCEEeCcCCCC
Q 026163          221 -IPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       221 -~p~~l~~l~~L~~L~ls~N~l  241 (242)
                       +...+...+.|..|++++|++
T Consensus       289 ~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  289 ALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHhcchhhHHhcCCcccc
Confidence             112233445555555555554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.43  E-value=8.2e-08  Score=88.59  Aligned_cols=132  Identities=23%  Similarity=0.298  Sum_probs=68.6

Q ss_pred             CCCCEEEecCCCcccccCchhhh-cCCCCCEEeccCccCCCC-CChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCE
Q 026163          108 PNLKSFKIHSNYLLSGSIPSEIT-ALSMLQTLELPSSRLTGI-IPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKI  185 (242)
Q Consensus       108 ~~L~~L~l~~~~~~~~~~p~~~~-~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  185 (242)
                      .+|++|++++...+...-|..++ .+|.|+.|.+++-.+... +-....++++|..||+|+..++..  ..++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            34666666655544444444443 366666666666555321 122234566666666666666522  45566666666


Q ss_pred             EEeecCCCcc-ccccccCCCCCCcEEEcccCCCCCCC--c----ccccCCcCCCEEeCcCCCC
Q 026163          186 LNLSSNFLVG-NIPLTLCHLSKLKILNLSSNSLVGNI--P----PTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       186 L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~--p----~~l~~l~~L~~L~ls~N~l  241 (242)
                      |.+.+=.+.. ..-..+..+++|+.||+|........  .    +.-..+|+|+.||.|++.+
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence            6665544442 11224455666666666665543211  1    1122456666666666543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.38  E-value=4e-07  Score=53.44  Aligned_cols=37  Identities=38%  Similarity=0.603  Sum_probs=28.7

Q ss_pred             CCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCC
Q 026163          181 SKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV  218 (242)
Q Consensus       181 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  218 (242)
                      ++|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            46888888888888 46666888888888888888887

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.37  E-value=2.2e-08  Score=72.79  Aligned_cols=107  Identities=24%  Similarity=0.324  Sum_probs=80.8

Q ss_pred             CCEEEecCCCcccccCchh---hhcCCCCCEEeccCccCCCCCChhc-cCCcCCcEEEcccCcCCCCCCcCcCCCCCCCE
Q 026163          110 LKSFKIHSNYLLSGSIPSE---ITALSMLQTLELPSSRLTGIIPSEM-GRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKI  185 (242)
Q Consensus       110 L~~L~l~~~~~~~~~~p~~---~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  185 (242)
                      +..++++.+.+  +.+++.   +.....|+..++++|.+. .+|..| ..++.++.|++++|+++ .+|.++..++.|+.
T Consensus        29 ~h~ldLssc~l--m~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   29 LHFLDLSSCQL--MYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             hhhcccccchh--hHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence            44556665554  334444   445566777899999998 455555 55678999999999998 78888999999999


Q ss_pred             EEeecCCCccccccccCCCCCCcEEEcccCCCCCCCc
Q 026163          186 LNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP  222 (242)
Q Consensus       186 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p  222 (242)
                      |+++.|.+. ..|..+..+.++..|+..+|.+. .+|
T Consensus       105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid  139 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EID  139 (177)
T ss_pred             cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCc
Confidence            999999988 56777777888888988888876 444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.36  E-value=8e-07  Score=68.75  Aligned_cols=102  Identities=25%  Similarity=0.230  Sum_probs=56.3

Q ss_pred             CCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCcccc-ccccCCCCCCcEEEc
Q 026163          134 MLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNI-PLTLCHLSKLKILNL  212 (242)
Q Consensus       134 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L  212 (242)
                      ....+|+++|.+...  ..|..++.|.+|.+++|+|+..-|.--..+++|+.|.+.+|.|.... -..+..+|+|++|.+
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            455566666665421  34555666666666666666444444444556666666666665211 123455666666666


Q ss_pred             ccCCCCCCCc---ccccCCcCCCEEeCc
Q 026163          213 SSNSLVGNIP---PTLGHLTQLTTLAMS  237 (242)
Q Consensus       213 ~~N~l~~~~p---~~l~~l~~L~~L~ls  237 (242)
                      -+|+++..--   -.+..+|+|+.||++
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehh
Confidence            6666653211   234566666666654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.36  E-value=9.4e-08  Score=79.31  Aligned_cols=111  Identities=19%  Similarity=0.196  Sum_probs=68.1

Q ss_pred             CCCCCEEeccCccCCCC----CChhccCCcCCcEEEcccCcCCCC----CCcCcCCCCCCCEEEeecCCCcc----cccc
Q 026163          132 LSMLQTLELPSSRLTGI----IPSEMGRLRNLVRLDLSDNYIGGY----IPPTLGRLSKLKILNLSSNFLVG----NIPL  199 (242)
Q Consensus       132 l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~----~~p~  199 (242)
                      -++|+++...+|++...    +...|...+.|+.+.++.|.|...    +...+..+++|+.|||.+|.++.    .+.+
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            45566666666666532    112344556777777777766421    11235567788888888887763    2334


Q ss_pred             ccCCCCCCcEEEcccCCCCCCCcccc-----cCCcCCCEEeCcCCCCC
Q 026163          200 TLCHLSKLKILNLSSNSLVGNIPPTL-----GHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       200 ~l~~l~~L~~L~L~~N~l~~~~p~~l-----~~l~~L~~L~ls~N~lt  242 (242)
                      .+..++.|+.|++++|.+...-...+     ...|+|+.|.+.+|.|+
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            56667778888888887765433222     24577888888888764

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.27  E-value=1.1e-06  Score=51.58  Aligned_cols=38  Identities=47%  Similarity=0.680  Sum_probs=27.7

Q ss_pred             cCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCcc
Q 026163          157 RNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVG  195 (242)
Q Consensus       157 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  195 (242)
                      ++|++|++++|+|+ .+|+.+.++++|++|++++|+++.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            46788888888887 566667888888888888888773

...

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.18  E-value=5.3e-07  Score=72.20  Aligned_cols=87  Identities=31%  Similarity=0.386  Sum_probs=45.3

Q ss_pred             hhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccC--cCCCCCCcCcCCCCCCCEEEeecCCCccccccc---cCC
Q 026163          129 ITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDN--YIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLT---LCH  203 (242)
Q Consensus       129 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~---l~~  203 (242)
                      ...+..|+.|.+.+..++..  ..+..+++|++|.++.|  ++.+.++.....+++|+++++++|+++.  ++.   +..
T Consensus        39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~  114 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKE  114 (260)
T ss_pred             cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhh
Confidence            33444555555555555421  23445566666666666  4444444444455666666666666652  222   334


Q ss_pred             CCCCcEEEcccCCCCC
Q 026163          204 LSKLKILNLSSNSLVG  219 (242)
Q Consensus       204 l~~L~~L~L~~N~l~~  219 (242)
                      +++|..|++.+|..+.
T Consensus       115 l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  115 LENLKSLDLFNCSVTN  130 (260)
T ss_pred             hcchhhhhcccCCccc
Confidence            4455566666665543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.09  E-value=5.9e-06  Score=64.01  Aligned_cols=104  Identities=25%  Similarity=0.265  Sum_probs=77.6

Q ss_pred             CCEEeccCccCCCCCChhcc-CCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcc
Q 026163          135 LQTLELPSSRLTGIIPSEMG-RLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLS  213 (242)
Q Consensus       135 L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~  213 (242)
                      -+.+++.+.++.. + ..++ -..+...+|+++|++.  .-+.|..+++|.+|.+++|+|+..-|.--..+++|..|.+.
T Consensus        21 e~e~~LR~lkip~-i-enlg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   21 ERELDLRGLKIPV-I-ENLGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             ccccccccccccc-h-hhccccccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence            4556666666542 1 1122 2356889999999986  23467889999999999999997666555567899999999


Q ss_pred             cCCCCCCCc-ccccCCcCCCEEeCcCCCCC
Q 026163          214 SNSLVGNIP-PTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       214 ~N~l~~~~p-~~l~~l~~L~~L~ls~N~lt  242 (242)
                      +|.|..... +.+..+|+|++|.+-+|+++
T Consensus        97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen   97 NNSIQELGDLDPLASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             CcchhhhhhcchhccCCccceeeecCCchh
Confidence            999874221 34678899999999999864

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.08  E-value=6.3e-07  Score=82.84  Aligned_cols=139  Identities=17%  Similarity=0.204  Sum_probs=97.4

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL  159 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  159 (242)
                      .+++.|++++..  .+....+...-..||.|+.|.+.+-......+.....++++|+.||+|+++++..  ..++.+++|
T Consensus       122 ~nL~~LdI~G~~--~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknL  197 (699)
T KOG3665|consen  122 QNLQHLDISGSE--LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNL  197 (699)
T ss_pred             HhhhhcCccccc--hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccH
Confidence            456777776641  2222221233456899999999955544444444567899999999999999844  778999999


Q ss_pred             cEEEcccCcCCC-CCCcCcCCCCCCCEEEeecCCCcccc--c----cccCCCCCCcEEEcccCCCCCCCc
Q 026163          160 VRLDLSDNYIGG-YIPPTLGRLSKLKILNLSSNFLVGNI--P----LTLCHLSKLKILNLSSNSLVGNIP  222 (242)
Q Consensus       160 ~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~--p----~~l~~l~~L~~L~L~~N~l~~~~p  222 (242)
                      +.|.+.+=.+.. ..-..+-++++|+.||+|..+.....  .    +.-..+|+|+.||.+++.+.+.+-
T Consensus       198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~l  267 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEIL  267 (699)
T ss_pred             HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHH
Confidence            999998877763 22234668999999999987655321  1    123458999999999988875433

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=2.9e-07  Score=75.26  Aligned_cols=60  Identities=27%  Similarity=0.233  Sum_probs=43.1

Q ss_pred             CCCCCCCEEEeecC-CCccccccccCCCCCCcEEEcccCCCCCCCccc---ccCCcCCCEEeCcCC
Q 026163          178 GRLSKLKILNLSSN-FLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPT---LGHLTQLTTLAMSNK  239 (242)
Q Consensus       178 ~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~---l~~l~~L~~L~ls~N  239 (242)
                      .++++|.+|||++| .++......|.+++.|++|.++.|..  .+|+.   +...|+|.+||+.+.
T Consensus       310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            46788899998876 45544455677888899999988875  35543   456788888887653

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.83  E-value=0.00012  Score=53.01  Aligned_cols=127  Identities=17%  Similarity=0.250  Sum_probs=67.3

Q ss_pred             eCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcC
Q 026163           99 LGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLG  178 (242)
Q Consensus        99 i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  178 (242)
                      ++...|...++|+.+.+.. .. ...-...|..+++|+.+.+..+ +...-...|.++++++.+.+.+ .+.......+.
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~-~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~   78 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TI-KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS   78 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-Ce-eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence            4466788888899988873 33 2222344778888999998875 6644445677887899999976 44434455677


Q ss_pred             CCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCC
Q 026163          179 RLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLT  232 (242)
Q Consensus       179 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  232 (242)
                      .+++|+.+.+..+ ++......|.+. +|+.+.+.. .+.......+.++++|+
T Consensus        79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             ccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            8889999998765 554445567776 889888876 34434446677776664

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.82  E-value=1.5e-05  Score=64.70  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=17.3

Q ss_pred             CCCCCcEEEcccCCCCCC----CcccccCCcCCCEEeCcCC
Q 026163          203 HLSKLKILNLSSNSLVGN----IPPTLGHLTQLTTLAMSNK  239 (242)
Q Consensus       203 ~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~ls~N  239 (242)
                      .+.+|+.||+.+|-++-.    +...+..++.|+.|.+.++
T Consensus       212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC  252 (388)
T COG5238         212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC  252 (388)
T ss_pred             HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence            345555555555555421    1123334444555555444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.81  E-value=8.9e-05  Score=64.19  Aligned_cols=71  Identities=17%  Similarity=0.282  Sum_probs=46.4

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCC-CCCEEEecCCCcccccCchhhhcCCCCCEEeccCc-cCCCCCChhccCCc
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFP-NLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSS-RLTGIIPSEMGRLR  157 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~-~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~  157 (242)
                      ...+.|+++++   .+.. + |    .+| +|++|.+++++.+ ..+|..+  .++|++|++++| .+. .+|.      
T Consensus        52 ~~l~~L~Is~c---~L~s-L-P----~LP~sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------  112 (426)
T PRK15386         52 RASGRLYIKDC---DIES-L-P----VLPNELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHCPEIS-GLPE------  112 (426)
T ss_pred             cCCCEEEeCCC---CCcc-c-C----CCCCCCcEEEccCCCCc-ccCCchh--hhhhhheEccCccccc-cccc------
Confidence            45778888876   4332 2 1    233 6999999876665 3556544  258999999998 554 4553      


Q ss_pred             CCcEEEcccCcC
Q 026163          158 NLVRLDLSDNYI  169 (242)
Q Consensus       158 ~L~~L~Ls~N~l  169 (242)
                      +|+.|+++.+..
T Consensus       113 sLe~L~L~~n~~  124 (426)
T PRK15386        113 SVRSLEIKGSAT  124 (426)
T ss_pred             ccceEEeCCCCC
Confidence            466777766553

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.75  E-value=7.9e-06  Score=67.01  Aligned_cols=69  Identities=13%  Similarity=0.202  Sum_probs=34.1

Q ss_pred             ccceEe--CCCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCc
Q 026163           71 WTGIRC--NSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSS  143 (242)
Q Consensus        71 w~gv~c--~~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n  143 (242)
                      |..|.|  ....+++.|+++.+   .+...|. .....+.+|++|-+.+...-.......+..+|.+++|+++.|
T Consensus        86 WseI~~ile~lP~l~~LNls~N---~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen   86 WSEIGAILEQLPALTTLNLSCN---SLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             HHHHHHHHhcCccceEeeccCC---cCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence            544444  34556666666666   4444431 111344566666665433322222333445566666666665

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=9e-07  Score=72.42  Aligned_cols=131  Identities=24%  Similarity=0.261  Sum_probs=80.7

Q ss_pred             CCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCc-CCCC-CCcCcCCCCCCCEE
Q 026163          109 NLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNY-IGGY-IPPTLGRLSKLKIL  186 (242)
Q Consensus       109 ~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~-~p~~~~~l~~L~~L  186 (242)
                      .|+++|++..++....+...+..+.+|+.|.+.++++.+.+-..+..-.+|+.|+++.+. ++.. ..-.+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            478888885555433444456778888888888888887766677777778888877653 3311 11124566677777


Q ss_pred             EeecCCCccccc-----------------------------cccCCCCCCcEEEcccCCC-CCCCcccccCCcCCCEEeC
Q 026163          187 NLSSNFLVGNIP-----------------------------LTLCHLSKLKILNLSSNSL-VGNIPPTLGHLTQLTTLAM  236 (242)
Q Consensus       187 ~L~~N~l~~~~p-----------------------------~~l~~l~~L~~L~L~~N~l-~~~~p~~l~~l~~L~~L~l  236 (242)
                      +++.+.+.....                             .-..++|+|.+|||++|.. +......+.+++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            777665542111                             1123567777788777653 3333345667777777777


Q ss_pred             cCC
Q 026163          237 SNK  239 (242)
Q Consensus       237 s~N  239 (242)
                      +.+
T Consensus       346 sRC  348 (419)
T KOG2120|consen  346 SRC  348 (419)
T ss_pred             hhh
Confidence            654

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.64  E-value=6e-05  Score=43.92  Aligned_cols=30  Identities=40%  Similarity=0.939  Sum_probs=17.8

Q ss_pred             HHHHHHHHh------------cCCCCCCCCCCCCCCCCCCcccceEeC
Q 026163           42 QLEREALLI------------TGWWYDNWATSGNYTSDHCKWTGIRCN   77 (242)
Q Consensus        42 ~~~~~~l~~------------~~~w~~~~~~~~~~~~~~C~w~gv~c~   77 (242)
                      ++|++||+.            +.+|..    ..  ..++|+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~----~~--~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNP----SS--DSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--T----T----S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCC----cC--CCCCeeeccEEeC
Confidence            567888876            234443    11  3799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.61  E-value=0.00026  Score=61.32  Aligned_cols=124  Identities=17%  Similarity=0.207  Sum_probs=61.4

Q ss_pred             CCCcccceEeCCCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCC
Q 026163           67 DHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLT  146 (242)
Q Consensus        67 ~~C~w~gv~c~~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~  146 (242)
                      +.|.+..+. .-...++.|.+.++   .-...+ +..+  .++|++|++++|..+. .+|.      .|+.|++..+...
T Consensus        60 s~c~L~sLP-~LP~sLtsL~Lsnc---~nLtsL-P~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~  125 (426)
T PRK15386         60 KDCDIESLP-VLPNELTEITIENC---NNLTTL-PGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATD  125 (426)
T ss_pred             CCCCCcccC-CCCCCCcEEEccCC---CCcccC-Cchh--hhhhhheEccCccccc-cccc------ccceEEeCCCCCc
Confidence            345444443 33446788888765   332333 2222  2478888888663332 3443      4666777665543


Q ss_pred             --CCCChhccCCcCCcEEEcccCcCC--CCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccC
Q 026163          147 --GIIPSEMGRLRNLVRLDLSDNYIG--GYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSN  215 (242)
Q Consensus       147 --~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N  215 (242)
                        +.+|.      +|+.|.+.+++..  ...|..  -.++|++|++++|... ..|..+.  .+|+.|+++.+
T Consensus       126 ~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        126 SIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             ccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence              12332      3555555432211  011111  1145677777766654 3343332  46667776655

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.55  E-value=5.8e-05  Score=60.70  Aligned_cols=92  Identities=25%  Similarity=0.277  Sum_probs=67.0

Q ss_pred             CChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecC--CCccccccccCCCCCCcEEEcccCCCCCC-Ccccc
Q 026163          149 IPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSN--FLVGNIPLTLCHLSKLKILNLSSNSLVGN-IPPTL  225 (242)
Q Consensus       149 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N--~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~l  225 (242)
                      +....-.+..|+.+.+.+..++..  ..+-.+++|++|.++.|  ++.+.++.....+|+|+++++++|++... --..+
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl  112 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL  112 (260)
T ss_pred             cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence            444445567788888887777622  35667899999999999  66666665666779999999999999731 11335


Q ss_pred             cCCcCCCEEeCcCCCCC
Q 026163          226 GHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       226 ~~l~~L~~L~ls~N~lt  242 (242)
                      ..+++|..|++.+|..+
T Consensus       113 ~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSVT  129 (260)
T ss_pred             hhhcchhhhhcccCCcc
Confidence            56778889999888643

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.53  E-value=2.3e-06  Score=69.45  Aligned_cols=83  Identities=29%  Similarity=0.249  Sum_probs=35.5

Q ss_pred             CCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCcccc-ccccCCCCCCcEEEc
Q 026163          134 MLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNI-PLTLCHLSKLKILNL  212 (242)
Q Consensus       134 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L  212 (242)
                      +.+.|+.-++.++++  .....|+.|+.|.|+-|+|+..  ..+..+++|++|+|..|.|.+.- -..+.++|+|+.|.|
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            344444444444422  2223444444444444444421  12344444555555555444210 112344555555555


Q ss_pred             ccCCCCCC
Q 026163          213 SSNSLVGN  220 (242)
Q Consensus       213 ~~N~l~~~  220 (242)
                      ..|+-.|.
T Consensus        96 ~ENPCc~~  103 (388)
T KOG2123|consen   96 DENPCCGE  103 (388)
T ss_pred             ccCCcccc
Confidence            55554443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.52  E-value=3.2e-05  Score=63.52  Aligned_cols=84  Identities=25%  Similarity=0.281  Sum_probs=34.6

Q ss_pred             CCCCCEEeccCccCCCC--CChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccc-cccccCCCCCCc
Q 026163          132 LSMLQTLELPSSRLTGI--IPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGN-IPLTLCHLSKLK  208 (242)
Q Consensus       132 l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~  208 (242)
                      .+.++.+|+.+|.+++-  +...+.++|.|++|+++.|++...+-..-....+|+.|-|.+..+... .-..+..+|+++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            34455555555555421  122234455555555555554422211112333445555544444321 112233444444


Q ss_pred             EEEcccC
Q 026163          209 ILNLSSN  215 (242)
Q Consensus       209 ~L~L~~N  215 (242)
                      .|.++.|
T Consensus       150 elHmS~N  156 (418)
T KOG2982|consen  150 ELHMSDN  156 (418)
T ss_pred             hhhhccc
Confidence            4444444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.46  E-value=0.0001  Score=59.85  Aligned_cols=157  Identities=18%  Similarity=0.194  Sum_probs=81.2

Q ss_pred             CCeEEEEecccCCCCceee----eCCCCcCCCCCCCEEEecCCCccccc----Cc-------hhhhcCCCCCEEeccCcc
Q 026163           80 GSVIRVSLLWYENDNMKGE----LGRFNFSCFPNLKSFKIHSNYLLSGS----IP-------SEITALSMLQTLELPSSR  144 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~----i~~~~~~~l~~L~~L~l~~~~~~~~~----~p-------~~~~~l~~L~~L~l~~n~  144 (242)
                      ..++.+++++|   .+..+    + ...+.+-.+|+..++++  .++|.    ++       +.+.++|+|+..++|.|.
T Consensus        30 d~~~evdLSGN---tigtEA~e~l-~~~ia~~~~L~vvnfsd--~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA  103 (388)
T COG5238          30 DELVEVDLSGN---TIGTEAMEEL-CNVIANVRNLRVVNFSD--AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA  103 (388)
T ss_pred             cceeEEeccCC---cccHHHHHHH-HHHHhhhcceeEeehhh--hhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence            35666777665   33221    2 23344555666666652  22232    12       223456777777777777


Q ss_pred             CCCCCChh----ccCCcCCcEEEcccCcCCCCCCcC-------------cCCCCCCCEEEeecCCCccccc----cccCC
Q 026163          145 LTGIIPSE----MGRLRNLVRLDLSDNYIGGYIPPT-------------LGRLSKLKILNLSSNFLVGNIP----LTLCH  203 (242)
Q Consensus       145 l~~~~p~~----~~~l~~L~~L~Ls~N~l~~~~p~~-------------~~~l~~L~~L~L~~N~l~~~~p----~~l~~  203 (242)
                      |....|..    ++.-+.|++|.+++|.+...--.-             ..+-|.|+......|++.....    ..+..
T Consensus       104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s  183 (388)
T COG5238         104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES  183 (388)
T ss_pred             cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence            66555543    344566777777777654221111             1234567777777776653111    11222


Q ss_pred             CCCCcEEEcccCCCCCCC-----cccccCCcCCCEEeCcCCCCC
Q 026163          204 LSKLKILNLSSNSLVGNI-----PPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       204 l~~L~~L~L~~N~l~~~~-----p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      -..|+.+.+..|.|.-..     -..+..+.+|+.||+.+|-||
T Consensus       184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence            346667777777664211     112234566777777777654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.18  E-value=0.0013  Score=47.52  Aligned_cols=107  Identities=12%  Similarity=0.208  Sum_probs=65.8

Q ss_pred             hhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCC
Q 026163          128 EITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKL  207 (242)
Q Consensus       128 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  207 (242)
                      .|.++++|+.+.+.. .+...-...|.++.+|+.+.+..+ +.......+..+++++.+.+.+ .+.......|..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            477888999999985 566455667888889999999886 6645556788888999999976 5543445567889999


Q ss_pred             cEEEcccCCCCCCCcccccCCcCCCEEeCcCC
Q 026163          208 KILNLSSNSLVGNIPPTLGHLTQLTTLAMSNK  239 (242)
Q Consensus       208 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N  239 (242)
                      +.+++..+ +.......+.+. +|+.+.+..+
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~  113 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN  113 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TTB
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECCC
Confidence            99999776 553334556666 8888887653

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.08  E-value=2e-05  Score=64.14  Aligned_cols=79  Identities=27%  Similarity=0.371  Sum_probs=39.7

Q ss_pred             hcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCC--cCcCCCCCCCEEEeecCCCcccccc-----ccC
Q 026163          130 TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIP--PTLGRLSKLKILNLSSNFLVGNIPL-----TLC  202 (242)
Q Consensus       130 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~-----~l~  202 (242)
                      ..++.|++|.|+-|+|+..  ..+..+++|++|+|..|.|.. +.  ..+.++++|+.|+|..|.-.+.-+.     .+.
T Consensus        38 ~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR  114 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR  114 (388)
T ss_pred             HhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence            3455556666666655532  234455556666666665542 11  2345556666666666555443222     233


Q ss_pred             CCCCCcEEE
Q 026163          203 HLSKLKILN  211 (242)
Q Consensus       203 ~l~~L~~L~  211 (242)
                      -+|+|+.||
T Consensus       115 ~LPnLkKLD  123 (388)
T KOG2123|consen  115 VLPNLKKLD  123 (388)
T ss_pred             Hcccchhcc
Confidence            455555554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.07  E-value=0.0023  Score=31.34  Aligned_cols=18  Identities=44%  Similarity=0.785  Sum_probs=8.3

Q ss_pred             CcEEEcccCCCCCCCcccc
Q 026163          207 LKILNLSSNSLVGNIPPTL  225 (242)
Q Consensus       207 L~~L~L~~N~l~~~~p~~l  225 (242)
                      |++|++++|+++ .+|..+
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            444555555444 344333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.66  E-value=0.00014  Score=57.83  Aligned_cols=88  Identities=24%  Similarity=0.267  Sum_probs=75.5

Q ss_pred             hhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCC
Q 026163          128 EITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKL  207 (242)
Q Consensus       128 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  207 (242)
                      .+..+...+.||++.|++. .+-..|.-++.+..|+++.|++. ..|..++....++.+++..|..+ ..|.+++..+.+
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            3677888999999999887 45566777888999999999998 78888888888899999988887 788899999999


Q ss_pred             cEEEcccCCCC
Q 026163          208 KILNLSSNSLV  218 (242)
Q Consensus       208 ~~L~L~~N~l~  218 (242)
                      +++++-.|.+.
T Consensus       114 k~~e~k~~~~~  124 (326)
T KOG0473|consen  114 KKNEQKKTEFF  124 (326)
T ss_pred             chhhhccCcch
Confidence            99999988865

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.61  E-value=0.0002  Score=56.95  Aligned_cols=94  Identities=16%  Similarity=0.238  Sum_probs=79.1

Q ss_pred             eeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCc
Q 026163           98 ELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTL  177 (242)
Q Consensus        98 ~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  177 (242)
                      ++|...+..+...+.||++.|...  .+-..|.-++.+..|+++.|++. ..|.++++...++.+++..|..+ ..|.++
T Consensus        32 ~~~v~ei~~~kr~tvld~~s~r~v--n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~  107 (326)
T KOG0473|consen   32 EIPVREIASFKRVTVLDLSSNRLV--NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQ  107 (326)
T ss_pred             ccchhhhhccceeeeehhhhhHHH--hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccc
Confidence            444567788899999999976552  23445777889999999999998 78999999999999999999988 889999


Q ss_pred             CCCCCCCEEEeecCCCcc
Q 026163          178 GRLSKLKILNLSSNFLVG  195 (242)
Q Consensus       178 ~~l~~L~~L~L~~N~l~~  195 (242)
                      +..+.++++++-+|.+..
T Consensus       108 ~k~~~~k~~e~k~~~~~~  125 (326)
T KOG0473|consen  108 KKEPHPKKNEQKKTEFFR  125 (326)
T ss_pred             cccCCcchhhhccCcchH
Confidence            999999999999998763

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.16  E-value=0.029  Score=25.48  Aligned_cols=7  Identities=43%  Similarity=0.733  Sum_probs=2.5

Q ss_pred             EEeccCc
Q 026163          137 TLELPSS  143 (242)
Q Consensus       137 ~L~l~~n  143 (242)
                      +|++++|
T Consensus         5 ~L~l~~n   11 (17)
T PF13504_consen    5 TLDLSNN   11 (17)
T ss_dssp             EEEETSS
T ss_pred             EEECCCC
Confidence            3333333

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.57  E-value=0.012  Score=52.23  Aligned_cols=111  Identities=23%  Similarity=0.197  Sum_probs=57.3

Q ss_pred             CCCCCEEEecCCCccccc-CchhhhcCCCCCEEeccCc-cCCCCCC----hhccCCcCCcEEEcccCc-CCCCCCcCcC-
Q 026163          107 FPNLKSFKIHSNYLLSGS-IPSEITALSMLQTLELPSS-RLTGIIP----SEMGRLRNLVRLDLSDNY-IGGYIPPTLG-  178 (242)
Q Consensus       107 l~~L~~L~l~~~~~~~~~-~p~~~~~l~~L~~L~l~~n-~l~~~~p----~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~-  178 (242)
                      .+.|+.+.+.++..+... +-.....+++|+.|+++++ ......+    .....+.+|+.+++++.. ++...-..+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            566666666654332211 2233455677777777762 1111111    122345667777777766 4432222222 


Q ss_pred             CCCCCCEEEeecCC-Ccccc-ccccCCCCCCcEEEcccCCC
Q 026163          179 RLSKLKILNLSSNF-LVGNI-PLTLCHLSKLKILNLSSNSL  217 (242)
Q Consensus       179 ~l~~L~~L~L~~N~-l~~~~-p~~l~~l~~L~~L~L~~N~l  217 (242)
                      .+++|++|.+.++. +++.. -.....++.|++|+++++..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            26677777766555 44321 22234566677777776654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.45  E-value=0.012  Score=45.87  Aligned_cols=83  Identities=19%  Similarity=0.168  Sum_probs=51.5

Q ss_pred             CCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCC-CCCcCcC-CCCCCCEEEeecC-CCccccccccCCCCCCcE
Q 026163          133 SMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGG-YIPPTLG-RLSKLKILNLSSN-FLVGNIPLTLCHLSKLKI  209 (242)
Q Consensus       133 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~-~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~  209 (242)
                      ..++.+|-++..|..+--+.+.+++.++.|.+.++.--+ .--+.++ -.++|+.|++++| +|+...-..+.++++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            357788888887776555667777778887777764211 1011111 3467888888866 455544445667777777


Q ss_pred             EEcccC
Q 026163          210 LNLSSN  215 (242)
Q Consensus       210 L~L~~N  215 (242)
                      |.+.+=
T Consensus       181 L~l~~l  186 (221)
T KOG3864|consen  181 LHLYDL  186 (221)
T ss_pred             HHhcCc
Confidence            776543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=92.38  E-value=0.04  Score=48.81  Aligned_cols=111  Identities=24%  Similarity=0.170  Sum_probs=74.8

Q ss_pred             hcCCCCCEEeccCccCCCC--CChhccCCcCCcEEEcccC-cCCCCCC----cCcCCCCCCCEEEeecCC-Ccccccccc
Q 026163          130 TALSMLQTLELPSSRLTGI--IPSEMGRLRNLVRLDLSDN-YIGGYIP----PTLGRLSKLKILNLSSNF-LVGNIPLTL  201 (242)
Q Consensus       130 ~~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~Ls~N-~l~~~~p----~~~~~l~~L~~L~L~~N~-l~~~~p~~l  201 (242)
                      ..++.|+.+.+.++.-...  .-......++|+.|+++++ ......+    .....+++|+.|+++.+. +++..-..+
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            3478899999988754323  2344567899999999873 2111111    234456899999999988 664433333


Q ss_pred             C-CCCCCcEEEcccCC-CCCCCc-ccccCCcCCCEEeCcCCC
Q 026163          202 C-HLSKLKILNLSSNS-LVGNIP-PTLGHLTQLTTLAMSNKV  240 (242)
Q Consensus       202 ~-~l~~L~~L~L~~N~-l~~~~p-~~l~~l~~L~~L~ls~N~  240 (242)
                      . .+++|+.|.+.++. +++..- .....++.|++|+++++.
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            3 37899999988777 554332 334578889999998764

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.08  E-value=0.22  Score=25.08  Aligned_cols=13  Identities=31%  Similarity=0.593  Sum_probs=6.1

Q ss_pred             CCCEEeccCccCC
Q 026163          134 MLQTLELPSSRLT  146 (242)
Q Consensus       134 ~L~~L~l~~n~l~  146 (242)
                      +|++|++++|+++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4444444444444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.08  E-value=0.22  Score=25.08  Aligned_cols=13  Identities=31%  Similarity=0.593  Sum_probs=6.1

Q ss_pred             CCCEEeccCccCC
Q 026163          134 MLQTLELPSSRLT  146 (242)
Q Consensus       134 ~L~~L~l~~n~l~  146 (242)
                      +|++|++++|+++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.91  E-value=0.22  Score=25.07  Aligned_cols=14  Identities=43%  Similarity=0.608  Sum_probs=8.7

Q ss_pred             CCCcEEEcccCCCC
Q 026163          205 SKLKILNLSSNSLV  218 (242)
Q Consensus       205 ~~L~~L~L~~N~l~  218 (242)
                      ++|++|++++|.++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45666666666665

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.91  E-value=0.22  Score=25.07  Aligned_cols=14  Identities=43%  Similarity=0.608  Sum_probs=8.7

Q ss_pred             CCCcEEEcccCCCC
Q 026163          205 SKLKILNLSSNSLV  218 (242)
Q Consensus       205 ~~L~~L~L~~N~l~  218 (242)
                      ++|++|++++|.++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45666666666665

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=90.21  E-value=0.0049  Score=55.05  Aligned_cols=37  Identities=32%  Similarity=0.458  Sum_probs=22.1

Q ss_pred             CCCcEEEcccCCCCCC----CcccccCCcCCCEEeCcCCCC
Q 026163          205 SKLKILNLSSNSLVGN----IPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       205 ~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~ls~N~l  241 (242)
                      ++++.++++.|.|+..    +.+.+..++.++++.+++|.+
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l  302 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL  302 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence            4566677777766543    233444556666676666654

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=90.02  E-value=0.0052  Score=54.88  Aligned_cols=157  Identities=27%  Similarity=0.305  Sum_probs=100.3

Q ss_pred             eEEEEecccCCCCceee----eCCCCcCCCCCCCEEEecCCCcccccCc---hhhhcC-CCCCEEeccCccCCCC----C
Q 026163           82 VIRVSLLWYENDNMKGE----LGRFNFSCFPNLKSFKIHSNYLLSGSIP---SEITAL-SMLQTLELPSSRLTGI----I  149 (242)
Q Consensus        82 v~~L~l~~~~~~~~~~~----i~~~~~~~l~~L~~L~l~~~~~~~~~~p---~~~~~l-~~L~~L~l~~n~l~~~----~  149 (242)
                      +..+.+.++   .+...    + ...+...+.|+.|++++|++......   ..+... ..+++|++..|.+++.    +
T Consensus        89 l~~L~L~~~---~l~~~~~~~l-~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l  164 (478)
T KOG4308|consen   89 LLHLSLANN---RLGDRGAEEL-AQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPL  164 (478)
T ss_pred             HHHhhhhhC---ccccchHHHH-HHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHH
Confidence            455666665   43321    2 34566778889999998776321111   112222 4577888888888744    3


Q ss_pred             ChhccCCcCCcEEEcccCcCCC----CCCcCcC----CCCCCCEEEeecCCCccc----cccccCCCCC-CcEEEcccCC
Q 026163          150 PSEMGRLRNLVRLDLSDNYIGG----YIPPTLG----RLSKLKILNLSSNFLVGN----IPLTLCHLSK-LKILNLSSNS  216 (242)
Q Consensus       150 p~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~----~l~~L~~L~L~~N~l~~~----~p~~l~~l~~-L~~L~L~~N~  216 (242)
                      ...+....+++.++++.|.+..    .++..+.    ...++++|.+.+|.++..    +...+...+. +..+++..|.
T Consensus       165 ~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~  244 (478)
T KOG4308|consen  165 AAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK  244 (478)
T ss_pred             HHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence            3445567889999999998741    1222333    477899999999988742    1123444455 7779999999


Q ss_pred             CCCC----CcccccCC-cCCCEEeCcCCCCC
Q 026163          217 LVGN----IPPTLGHL-TQLTTLAMSNKVAI  242 (242)
Q Consensus       217 l~~~----~p~~l~~l-~~L~~L~ls~N~lt  242 (242)
                      +.+.    ..+.+..+ +.+++++++.|.|+
T Consensus       245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~  275 (478)
T KOG4308|consen  245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSIT  275 (478)
T ss_pred             cchHHHHHHHHHhcccchhhhhhhhhcCCcc
Confidence            8743    23344555 67899999999875

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=89.00  E-value=0.15  Score=44.30  Aligned_cols=131  Identities=20%  Similarity=0.232  Sum_probs=52.8

Q ss_pred             CCCCCEEEecCCCcccccCchhh-hcCCCCCEEeccCcc-CCCCCChhc-cCCcCCcEEEcccCcCC--CCCCcCcCCCC
Q 026163          107 FPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSR-LTGIIPSEM-GRLRNLVRLDLSDNYIG--GYIPPTLGRLS  181 (242)
Q Consensus       107 l~~L~~L~l~~~~~~~~~~p~~~-~~l~~L~~L~l~~n~-l~~~~p~~~-~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~  181 (242)
                      +..|++++.+++...+...-..+ .+..+|++|-++.++ |++.--..+ .+.++|+.+++.+....  +.+...-.+++
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence            34455555554433222111122 235556666666554 221110111 23455555555554332  11122223455


Q ss_pred             CCCEEEeecCCCcccc-----ccccCCCCCCcEEEcccCCCCC-CCcccccCCcCCCEEeCc
Q 026163          182 KLKILNLSSNFLVGNI-----PLTLCHLSKLKILNLSSNSLVG-NIPPTLGHLTQLTTLAMS  237 (242)
Q Consensus       182 ~L~~L~L~~N~l~~~~-----p~~l~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~ls  237 (242)
                      .|+.+.++++......     ...-..+..|+.+.+++++... ..-+.+..+++|+.+++-
T Consensus       373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~  434 (483)
T KOG4341|consen  373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELI  434 (483)
T ss_pred             hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeee
Confidence            5666666554332110     1111233445555555555331 112233444455554443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=88.95  E-value=0.17  Score=24.97  Aligned_cols=13  Identities=38%  Similarity=0.468  Sum_probs=5.8

Q ss_pred             cCCCEEeCcCCCC
Q 026163          229 TQLTTLAMSNKVA  241 (242)
Q Consensus       229 ~~L~~L~ls~N~l  241 (242)
                      ++|++|++++|+|
T Consensus         2 ~~L~~L~l~~n~i   14 (24)
T PF13516_consen    2 PNLETLDLSNNQI   14 (24)
T ss_dssp             TT-SEEE-TSSBE
T ss_pred             CCCCEEEccCCcC
Confidence            4455555555554

...

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=87.52  E-value=0.51  Score=24.02  Aligned_cols=13  Identities=38%  Similarity=0.618  Sum_probs=6.8

Q ss_pred             CCCcEEEcccCCC
Q 026163          205 SKLKILNLSSNSL  217 (242)
Q Consensus       205 ~~L~~L~L~~N~l  217 (242)
                      .+|+.|++++|+|
T Consensus         2 ~~L~~L~L~~NkI   14 (26)
T smart00365        2 TNLEELDLSQNKI   14 (26)
T ss_pred             CccCEEECCCCcc
Confidence            3455555555554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.21  E-value=0.088  Score=41.25  Aligned_cols=33  Identities=33%  Similarity=0.248  Sum_probs=13.9

Q ss_pred             cCCcEEEcccC-cCCCCCCcCcCCCCCCCEEEee
Q 026163          157 RNLVRLDLSDN-YIGGYIPPTLGRLSKLKILNLS  189 (242)
Q Consensus       157 ~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~  189 (242)
                      ++|+.|++++| +|+..--..+.++++|+.|.+.
T Consensus       151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~  184 (221)
T KOG3864|consen  151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY  184 (221)
T ss_pred             cchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence            34555555544 2332222234444455544443

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=85.12  E-value=0.74  Score=23.71  Aligned_cols=12  Identities=33%  Similarity=0.398  Sum_probs=6.8

Q ss_pred             CCCEEeCcCCCC
Q 026163          230 QLTTLAMSNKVA  241 (242)
Q Consensus       230 ~L~~L~ls~N~l  241 (242)
                      +|++|||++|.|
T Consensus         3 ~L~~LdL~~N~i   14 (28)
T smart00368        3 SLRELDLSNNKL   14 (28)
T ss_pred             ccCEEECCCCCC
Confidence            455566665554

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=84.62  E-value=0.38  Score=43.19  Aligned_cols=63  Identities=27%  Similarity=0.259  Sum_probs=28.2

Q ss_pred             CCcCCcEEEcccCcCCCC--CCcCcCCCCCCCEEEeecC--CCccccccccC--CCCCCcEEEcccCCCCC
Q 026163          155 RLRNLVRLDLSDNYIGGY--IPPTLGRLSKLKILNLSSN--FLVGNIPLTLC--HLSKLKILNLSSNSLVG  219 (242)
Q Consensus       155 ~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N--~l~~~~p~~l~--~l~~L~~L~L~~N~l~~  219 (242)
                      +.+.+..+++++|++...  +...-...|+|..|+|++|  .+...  .++.  +...|++|.+.+|++..
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~  284 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCT  284 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCcccc
Confidence            344555556666655311  1111223455666666666  22211  1111  12345566666666543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=84.53  E-value=0.55  Score=40.89  Aligned_cols=112  Identities=18%  Similarity=0.104  Sum_probs=65.5

Q ss_pred             CCCCCCCEEEecCCCcccccCchhh-hcCCCCCEEeccCccCCCC--CChhccCCcCCcEEEcccCcCCCCC-----CcC
Q 026163          105 SCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGI--IPSEMGRLRNLVRLDLSDNYIGGYI-----PPT  176 (242)
Q Consensus       105 ~~l~~L~~L~l~~~~~~~~~~p~~~-~~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~-----p~~  176 (242)
                      .+.++|+.+.++++..++..--..+ .+.+.|+.+++..+.....  +...-.+++.|+.+.++++......     ...
T Consensus       317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~  396 (483)
T KOG4341|consen  317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS  396 (483)
T ss_pred             cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence            3557788888887766543211122 3567788888887765421  1122245677888888877543111     122


Q ss_pred             cCCCCCCCEEEeecCCCcc-ccccccCCCCCCcEEEcccCC
Q 026163          177 LGRLSKLKILNLSSNFLVG-NIPLTLCHLSKLKILNLSSNS  216 (242)
Q Consensus       177 ~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~  216 (242)
                      -..+..|+.+.|+++.... ..-+.+..+++|+.+++-+++
T Consensus       397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            2345667777787776542 223345666777777776665

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=82.83  E-value=0.87  Score=23.16  Aligned_cols=13  Identities=31%  Similarity=0.508  Sum_probs=6.8

Q ss_pred             CCcEEEcccCcCC
Q 026163          158 NLVRLDLSDNYIG  170 (242)
Q Consensus       158 ~L~~L~Ls~N~l~  170 (242)
                      +|++|++++|+++
T Consensus         3 ~L~~L~vs~N~Lt   15 (26)
T smart00364        3 SLKELNVSNNQLT   15 (26)
T ss_pred             ccceeecCCCccc
Confidence            3455555555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	242
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-06
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-06
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-05

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 60/144 (41%), Gaps = 2/144 (1%)
Query: 88  LWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTG 147
           L+ +N+   G++     +C   L S  +  NYL SG+IPS + +LS L+ L+L  + L G
Sbjct: 396 LYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYL-SGTIPSSLGSLSKLRDLKLWLNMLEG 453
Query: 148 IIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRXXXXXXXXXXXXXXVGNIPLTLCHXXXX 207
            IP E+  ++ L  L L  N + G IP  L                 G IP  +      
Sbjct: 454 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 513
Query: 208 XXXXXXXXXXVGNIPPTLGHLTQL 231
                      GNIP  LG    L
Sbjct: 514 AILKLSNNSFSGNIPAELGDCRSL 537

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 60/144 (41%), Gaps = 2/144 (1%)
Query: 88  LWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTG 147
           L+ +N+   G++     +C   L S  +  NYL SG+IPS + +LS L+ L+L  + L G
Sbjct: 399 LYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYL-SGTIPSSLGSLSKLRDLKLWLNMLEG 456
Query: 148 IIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRXXXXXXXXXXXXXXVGNIPLTLCHXXXX 207
            IP E+  ++ L  L L  N + G IP  L                 G IP  +      
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 208 XXXXXXXXXXVGNIPPTLGHLTQL 231
                      GNIP  LG    L
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSL 540

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 65  TSDHCK--WTGIRCNSAGSVIRVSLLWYENDNMKGELG-RFNFSCFPNLKSFKIHSNYLL 121
           T+D C   W G+ C++     RV+ L     N+        + +  P L    I     L
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89
Query: 122 SGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTL 177
            G IP  I  L+ L  L +  + ++G IP  + +++ LV LD S N + G +PP++
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	242
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-27
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-30
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-30
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  136 bits (344), Expect = 8e-39
 Identities = 42/184 (22%), Positives = 71/184 (38%), Gaps = 28/184 (15%)

Query: 57  NWATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIH 116
           +W  + +    +  W G+ C++     RV+ L     N+                     
Sbjct: 26  SWLPTTDCC--NRTWLGVLCDTDTQTYRVNNLDLSGLNLPK------------------- 64

Query: 117 SNYLLSGSIPSEITALSMLQTLELPSS-RLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPP 175
                   IPS +  L  L  L +     L G IP  + +L  L  L ++   + G IP 
Sbjct: 65  -----PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119

Query: 176 TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTT-L 234
            L ++  L  L+ S N L G +P ++  L  L  +    N + G IP + G  ++L T +
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179

Query: 235 AMSN 238
            +S 
Sbjct: 180 TISR 183

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  106 bits (266), Expect = 2e-27
 Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 3/132 (2%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSD 166
           F  L +    S   L+G IP     L+ L  ++L  + L G      G  +N  ++ L+ 
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 167 NYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLG 226
           N +   +   +G    L  L+L +N + G +P  L  L  L  LN+S N+L G I P  G
Sbjct: 231 NSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGG 288

Query: 227 HLTQLTTLAMSN 238
           +L +    A +N
Sbjct: 289 NLQRFDVSAYAN 300

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 63.7 bits (156), Expect = 3e-12
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 109 NLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNY 168
           N +   +  N  L+  +   +     L  L+L ++R+ G +P  + +L+ L  L++S N 
Sbjct: 222 NTQKIHLAKN-SLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 169 IGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLC 202
           + G IP   G L +  +   ++N  +   PL  C
Sbjct: 280 LCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  128 bits (325), Expect = 3e-34
 Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 1/137 (0%)

Query: 102 FNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVR 161
              +    L+   + +N   +G IP  ++  S L +L L  + L+G IPS +G L  L  
Sbjct: 388 LCQNPKNTLQELYLQNNGF-TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446

Query: 162 LDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNI 221
           L L  N + G IP  L  +  L+ L L  N L G IP  L + + L  ++LS+N L G I
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506

Query: 222 PPTLGHLTQLTTLAMSN 238
           P  +G L  L  L +SN
Sbjct: 507 PKWIGRLENLAILKLSN 523

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  128 bits (325), Expect = 3e-34
 Identities = 52/131 (39%), Positives = 71/131 (54%), Gaps = 1/131 (0%)

Query: 108 PNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDN 167
             L S  +  NYL SG+IPS + +LS L+ L+L  + L G IP E+  ++ L  L L  N
Sbjct: 418 SELVSLHLSFNYL-SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476

Query: 168 YIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGH 227
            + G IP  L   + L  ++LS+N L G IP  +  L  L IL LS+NS  GNIP  LG 
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536

Query: 228 LTQLTTLAMSN 238
              L  L ++ 
Sbjct: 537 CRSLIWLDLNT 547

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  126 bits (318), Expect = 3e-33
 Identities = 47/125 (37%), Positives = 65/125 (52%), Gaps = 1/125 (0%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSD 166
              L+  K+  N +L G IP E+  +  L+TL L  + LTG IPS +    NL  + LS+
Sbjct: 441 LSKLRDLKLWLN-MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499

Query: 167 NYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLG 226
           N + G IP  +GRL  L IL LS+N   GNIP  L     L  L+L++N   G IP  + 
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559

Query: 227 HLTQL 231
             +  
Sbjct: 560 KQSGK 564

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  123 bits (312), Expect = 1e-32
 Identities = 42/147 (28%), Positives = 66/147 (44%)

Query: 92  NDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPS 151
            + + G+   +  +     +     +     G    ++  LS      + S    G    
Sbjct: 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626

Query: 152 EMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILN 211
                 +++ LD+S N + GYIP  +G +  L ILNL  N + G+IP  +  L  L IL+
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686

Query: 212 LSSNSLVGNIPPTLGHLTQLTTLAMSN 238
           LSSN L G IP  +  LT LT + +SN
Sbjct: 687 LSSNKLDGRIPQAMSALTMLTEIDLSN 713

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  121 bits (306), Expect = 9e-32
 Identities = 35/184 (19%), Positives = 78/184 (42%), Gaps = 16/184 (8%)

Query: 63  NYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFN--FSCFPNLKSFKIHSNYL 120
           +   + C + G+ C     V  + L    +  +       +        L+S  + ++++
Sbjct: 34  SSNKNPCTFDGVTCRD-DKVTSIDLS---SKPLNVGFSAVSSSLLSLTGLESLFLSNSHI 89

Query: 121 LSGSIPSEITALSMLQTLELPSSRLTGIIPS--EMGRLRNLVRLDLSDNYIGGYIP-PTL 177
            +GS+       + L +L+L  + L+G + +   +G    L  L++S N +         
Sbjct: 90  -NGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGG 147

Query: 178 GRLSKLKILNLSSNFLVGNIPLTLC---HLSKLKILNLSSNSLVGNIPPTLGHLTQLTTL 234
            +L+ L++L+LS+N + G   +         +LK L +S N + G++   +     L  L
Sbjct: 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFL 205

Query: 235 AMSN 238
            +S+
Sbjct: 206 DVSS 209

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  119 bits (300), Expect = 6e-31
 Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 5/140 (3%)

Query: 100 GRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL 159
           G  + S   NL+   + SN   S  IP  +   S LQ L++  ++L+G     +     L
Sbjct: 192 GDVDVSRCVNLEFLDVSSNN-FSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTEL 249

Query: 160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCH-LSKLKILNLSSNSLV 218
             L++S N   G IPP    L  L+ L+L+ N   G IP  L      L  L+LS N   
Sbjct: 250 KLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307

Query: 219 GNIPPTLGHLTQLTTLAMSN 238
           G +PP  G  + L +LA+S+
Sbjct: 308 GAVPPFFGSCSLLESLALSS 327

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  116 bits (292), Expect = 6e-30
 Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 5/149 (3%)

Query: 94  NMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEM 153
              GE+  F       L    +  N+   G++P    + S+L++L L S+  +G +P + 
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNH-FYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338

Query: 154 -GRLRNLVRLDLSDNYIGGYIPPTLGRLS-KLKILNLSSNFLVGNIPLTLCH--LSKLKI 209
             ++R L  LDLS N   G +P +L  LS  L  L+LSSN   G I   LC    + L+ 
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398

Query: 210 LNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
           L L +N   G IPPTL + ++L +L +S 
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSF 427

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  116 bits (292), Expect = 7e-30
 Identities = 44/137 (32%), Positives = 62/137 (45%), Gaps = 5/137 (3%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLD 163
                 L+   I  N L SG     I+  + L+ L + S++  G IP     L++L  L 
Sbjct: 219 LGDCSALQHLDISGNKL-SGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLS 275

Query: 164 LSDNYIGGYIPPTL-GRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
           L++N   G IP  L G    L  L+LS N   G +P      S L+ L LSSN+  G +P
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335

Query: 223 P-TLGHLTQLTTLAMSN 238
             TL  +  L  L +S 
Sbjct: 336 MDTLLKMRGLKVLDLSF 352

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  114 bits (287), Expect = 3e-29
 Identities = 45/144 (31%), Positives = 65/144 (45%), Gaps = 6/144 (4%)

Query: 100 GRFNFSCFPNLKSFKIHSNYLLSGSIPSEITA-LSMLQTLELPSSRLTGIIPSEMGRLRN 158
           G        +L+   +  N   +G IP  ++     L  L+L  +   G +P   G    
Sbjct: 261 GPIPPLPLKSLQYLSLAENKF-TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319

Query: 159 LVRLDLSDNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPLTLCHLS-KLKILNLSSNS 216
           L  L LS N   G +P  TL ++  LK+L+LS N   G +P +L +LS  L  L+LSSN+
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379

Query: 217 LVGNIPPTLGH--LTQLTTLAMSN 238
             G I P L       L  L + N
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQN 403

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  113 bits (284), Expect = 7e-29
 Identities = 54/139 (38%), Positives = 71/139 (51%), Gaps = 6/139 (4%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEM-GRLRNLVR 161
             S    LK   I SN    G IP     L  LQ L L  ++ TG IP  + G    L  
Sbjct: 242 AISTCTELKLLNISSNQF-VGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTG 298

Query: 162 LDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPL-TLCHLSKLKILNLSSNSLVGN 220
           LDLS N+  G +PP  G  S L+ L LSSN   G +P+ TL  +  LK+L+LS N   G 
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358

Query: 221 IPPTLGHLT-QLTTLAMSN 238
           +P +L +L+  L TL +S+
Sbjct: 359 LPESLTNLSASLLTLDLSS 377

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  108 bits (272), Expect = 3e-27
 Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 9/138 (6%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITA---LSMLQTLELPSSRLTGIIPSEMGRLRNLV 160
                +L+   + +N + SG+             L+ L +  ++++G +   + R  NL 
Sbjct: 147 GLKLNSLEVLDLSANSI-SGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLE 203

Query: 161 RLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGN 220
            LD+S N     IP  LG  S L+ L++S N L G+    +   ++LK+LN+SSN  VG 
Sbjct: 204 FLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 262

Query: 221 IPPTLGHLTQLTTLAMSN 238
           IPP    L  L  L+++ 
Sbjct: 263 IPPLP--LKSLQYLSLAE 278

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  107 bits (270), Expect = 6e-27
 Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 5/131 (3%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSD 166
                   I S     G           +  L++  + L+G IP E+G +  L  L+L  
Sbjct: 607 LSTRNPCNITSRVY-GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665

Query: 167 NYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLG 226
           N I G IP  +G L  L IL+LSSN L G IP  +  L+ L  ++LS+N+L G IP    
Sbjct: 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-- 723

Query: 227 HLTQLTTLAMS 237
              Q  T   +
Sbjct: 724 --GQFETFPPA 732

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  106 bits (268), Expect = 1e-26
 Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 5/131 (3%)

Query: 108 PNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDN 167
             L++  +  N L +G IPS ++  + L  + L ++RLTG IP  +GRL NL  L LS+N
Sbjct: 466 KTLETLILDFNDL-TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524

Query: 168 YIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGH 227
              G IP  LG    L  L+L++N   G IP  +   S      +++N + G     + +
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKN 580

Query: 228 LTQLTTLAMSN 238
                    + 
Sbjct: 581 DGMKKECHGAG 591

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 99.2 bits (248), Expect = 5e-24
 Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 7/132 (5%)

Query: 109 NLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNY 168
           NL    + +N L +G IP  I  L  L  L+L ++  +G IP+E+G  R+L+ LDL+ N 
Sbjct: 491 NLNWISLSNNRL-TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549

Query: 169 IGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSN--SLVGNIPPTLG 226
             G IP  + + S      +++NF+ G   + + +    K  + + N     G     L 
Sbjct: 550 FNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605

Query: 227 HLTQLTTLAMSN 238
            L+      +++
Sbjct: 606 RLSTRNPCNITS 617

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  101 bits (253), Expect = 9e-25
 Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 2/141 (1%)

Query: 98  ELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLR 157
            LG ++F  FP L+   +     +         +LS L TL L  + +  +       L 
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100

Query: 158 NLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVG-NIPLTLCHLSKLKILNLSSNS 216
           +L +L   +  +       +G L  LK LN++ N +    +P    +L+ L+ L+LSSN 
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 217 LVGNIPPTLGHLTQLTTLAMS 237
           +       L  L Q+  L +S
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLS 181

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  100 bits (251), Expect = 2e-24
 Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 2/133 (1%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSD 166
             + K+  +  N L          +   LQ L+L    +  I       L +L  L L+ 
Sbjct: 27  PFSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 167 NYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVG-NIPPTL 225
           N I          LS L+ L      L       + HL  LK LN++ N +    +P   
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 226 GHLTQLTTLAMSN 238
            +LT L  L +S+
Sbjct: 146 SNLTNLEHLDLSS 158

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 99.3 bits (248), Expect = 4e-24
 Identities = 36/149 (24%), Positives = 57/149 (38%), Gaps = 4/149 (2%)

Query: 92  NDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPS 151
           N          +     +LK   +  N ++  ++ S    L  L+ L+   S L  +   
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEF 414

Query: 152 EM-GRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNI-PLTLCHLSKLKI 209
            +   LRNL+ LD+S  +           LS L++L ++ N    N  P     L  L  
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 210 LNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
           L+LS   L    P     L+ L  L MS+
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 96.6 bits (241), Expect = 4e-23
 Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 3/137 (2%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTG-IIPSEMGRLRNLVRL 162
           F    NL    I   +    +       LS L+ L++  +      +P     LRNL  L
Sbjct: 417 FLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
           DLS   +    P     LS L++LN+S N            L+ L++L+ S N ++ +  
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

Query: 223 PTLGHL-TQLTTLAMSN 238
             L H  + L  L ++ 
Sbjct: 536 QELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 95.5 bits (238), Expect = 9e-23
 Identities = 27/115 (23%), Positives = 40/115 (34%), Gaps = 2/115 (1%)

Query: 124 SIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKL 183
            IP  +      + L+L  + L  +          L  LDLS   I          LS L
Sbjct: 21  KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 184 KILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
             L L+ N +          LS L+ L     +L       +GHL  L  L +++
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 90.9 bits (226), Expect = 4e-21
 Identities = 31/140 (22%), Positives = 52/140 (37%), Gaps = 4/140 (2%)

Query: 102 FNFSCFPNLKSFKIHSNYL-LSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLV 160
           F+    P+L+   +  N L   G         + L+ L+L  + +  +  + +G L  L 
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLE 399

Query: 161 RLDLSDNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVG 219
            LD   + +           L  L  L++S              LS L++L ++ NS   
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459

Query: 220 NIPP-TLGHLTQLTTLAMSN 238
           N  P     L  LT L +S 
Sbjct: 460 NFLPDIFTELRNLTFLDLSQ 479

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 90.9 bits (226), Expect = 4e-21
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 1/120 (0%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLD 163
           F+   +L+  K+  N      +P   T L  L  L+L   +L  + P+    L +L  L+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500

Query: 164 LSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHL-SKLKILNLSSNSLVGNIP 222
           +S N            L+ L++L+ S N ++ +    L H  S L  LNL+ N       
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 79.3 bits (196), Expect = 3e-17
 Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 9/143 (6%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL---- 159
                 LK   +  N + S  +P   + L+ L+ L+L S+++  I  +++  L  +    
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCH-LSKLKILNLSSNSLV 218
           + LDLS N +   I P   +  +L  L L +NF   N+  T    L+ L++  L      
Sbjct: 180 LSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 219 GNI---PPTLGHLTQLTTLAMSN 238
                       L  L  L +  
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEE 261

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 71.6 bits (176), Expect = 1e-14
 Identities = 27/135 (20%), Positives = 43/135 (31%), Gaps = 4/135 (2%)

Query: 94  NMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEM 153
           + +       F+   NL    +    L     P+   +LS LQ L +  +    +     
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514

Query: 154 GRLRNLVRLDLSDNYIGGYIPPTLGRL-SKLKILNLSSNFLVGNIPLT--LCHLSKLKIL 210
             L +L  LD S N+I       L    S L  LNL+ N           L  +   + L
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL 574

Query: 211 NLSSNSLVGNIPPTL 225
            +    +    P   
Sbjct: 575 LVEVERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 32/165 (19%), Positives = 53/165 (32%), Gaps = 14/165 (8%)

Query: 81  SVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYL-----LSGSIPSEITALSML 135
           + + V  L       +G L +F+ S    L +  I    L         I      L+ +
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284

Query: 136 QTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVG 195
            +  L S  +  +             L+L +   G +    L  L +L   +       G
Sbjct: 285 SSFSLVSVTIERVKDF--SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK-----G 337

Query: 196 NIPLTLCHLSKLKILNLSSNSL--VGNIPPTLGHLTQLTTLAMSN 238
               +   L  L+ L+LS N L   G    +    T L  L +S 
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  100 bits (252), Expect = 1e-24
 Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 1/132 (0%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSD 166
             N+    +  N L      +  T  S L +L++  + ++ + P    +L  L  L+L  
Sbjct: 24  PTNITVLNLTHNQL-RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82

Query: 167 NYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLG 226
           N +      T    + L  L+L SN +             L  L+LS N L      T  
Sbjct: 83  NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142

Query: 227 HLTQLTTLAMSN 238
            L  L  L +SN
Sbjct: 143 QLENLQELLLSN 154

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 97.0 bits (242), Expect = 2e-23
 Identities = 37/143 (25%), Positives = 53/143 (37%), Gaps = 3/143 (2%)

Query: 98  ELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLR 157
            L   NF+ +  L S  +  N + S   P     L ML+ L L  + L+ +         
Sbjct: 39  RLPAANFTRYSQLTSLDVGFNTI-SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97

Query: 158 NLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSL 217
           NL  L L  N I         +   L  L+LS N L      T   L  L+ L LS+N +
Sbjct: 98  NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157

Query: 218 VGNIPPTLG--HLTQLTTLAMSN 238
                  L     + L  L +S+
Sbjct: 158 QALKSEELDIFANSSLKKLELSS 180

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 94.7 bits (236), Expect = 2e-22
 Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 6/153 (3%)

Query: 92  NDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEI---TALSMLQTLELPSSRLTGI 148
            DN    +    F+   NLK   + +++    ++ +E     A S L  L L  ++++ I
Sbjct: 337 EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396

Query: 149 IPSEMGRLRNLVRLDLSDNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKL 207
                  L +L  LDL  N IG  +       L  +  + LS N  +     +   +  L
Sbjct: 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 456

Query: 208 KILNLSSNSL--VGNIPPTLGHLTQLTTLAMSN 238
           + L L   +L  V + P     L  LT L +SN
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 89.7 bits (223), Expect = 1e-20
 Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 6/140 (4%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLD 163
           F+   NL    + SN +      +       L TL+L  + L+        +L NL  L 
Sbjct: 93  FAFCTNLTELHLMSNSI-QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL 151

Query: 164 LSDNYIGGYIPPTLG--RLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNI 221
           LS+N I       L     S LK L LSSN +    P     + +L  L L++  L  ++
Sbjct: 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSL 211

Query: 222 PPTLG---HLTQLTTLAMSN 238
              L      T +  L++SN
Sbjct: 212 TEKLCLELANTSIRNLSLSN 231

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.5 bits (220), Expect = 3e-20
 Identities = 33/145 (22%), Positives = 55/145 (37%), Gaps = 10/145 (6%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLD 163
           FS   +L+   +  N +       E   L  +  + L  ++   +  +    + +L RL 
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460

Query: 164 LSDNYIGG--YIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSL---- 217
           L    +      P     L  L IL+LS+N +       L  L KL+IL+L  N+L    
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLW 520

Query: 218 ----VGNIPPTLGHLTQLTTLAMSN 238
                G     L  L+ L  L + +
Sbjct: 521 KHANPGGPIYFLKGLSHLHILNLES 545

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.1 bits (219), Expect = 3e-20
 Identities = 37/154 (24%), Positives = 56/154 (36%), Gaps = 14/154 (9%)

Query: 98  ELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSS---------RLTGI 148
            +G  +F+  P L+ F +  N  +       +  L  ++ L L  S          L  I
Sbjct: 262 VVGNDSFAWLPQLEYFFLEYNN-IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320

Query: 149 IPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFL----VGNIPLTLCHL 204
                  L+ L  L++ DN I G        L  LK L+LS++F     + N        
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380

Query: 205 SKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
           S L ILNL+ N +          L  L  L +  
Sbjct: 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 86.6 bits (215), Expect = 9e-20
 Identities = 32/144 (22%), Positives = 47/144 (32%), Gaps = 10/144 (6%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLEL--------PSSRLTGIIPSEMGR 155
           F    NL    + +N + +      +  L  L+ L+L              G     +  
Sbjct: 476 FQPLRNLTILDLSNNNI-ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG 534

Query: 156 LRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSN 215
           L +L  L+L  N            L +LKI++L  N L         +   LK LNL  N
Sbjct: 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594

Query: 216 SLVGNIPPTLGH-LTQLTTLAMSN 238
            +        G     LT L M  
Sbjct: 595 LITSVEKKVFGPAFRNLTELDMRF 618

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 85.4 bits (212), Expect = 2e-19
 Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 13/148 (8%)

Query: 104 FSCFPNLKSFKIHSNYL--------LSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGR 155
                N++   +  ++         L          L  L+ L +  + + GI  +    
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351

Query: 156 LRNLVRLDLSDNYIGGYIPPTLG----RLSKLKILNLSSNFLVGNIPLTLCHLSKLKILN 211
           L NL  L LS+++                S L ILNL+ N +          L  L++L+
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411

Query: 212 LSSNSLVGNIPP-TLGHLTQLTTLAMSN 238
           L  N +   +       L  +  + +S 
Sbjct: 412 LGLNEIGQELTGQEWRGLENIFEIYLSY 439

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 84.3 bits (209), Expect = 7e-19
 Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 15/149 (10%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEIT---ALSMLQTLELPSSRLTGIIPSEMGRLR--N 158
           F     L    +++   L  S+  ++    A + ++ L L +S+L+    +    L+  N
Sbjct: 191 FHAIGRLFGLFLNNV-QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249

Query: 159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSN--- 215
           L  LDLS N +      +   L +L+   L  N +      +L  L  ++ LNL  +   
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

Query: 216 ------SLVGNIPPTLGHLTQLTTLAMSN 238
                 SL      +   L  L  L M +
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMED 338

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.7 bits (205), Expect = 2e-18
 Identities = 25/127 (19%), Positives = 34/127 (26%), Gaps = 8/127 (6%)

Query: 104 FSCFPNLKSFKIHSNYL-------LSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRL 156
                 L+   +  N L         G     +  LS L  L L S+    I       L
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559

Query: 157 RNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCH-LSKLKILNLSSN 215
             L  +DL  N +             LK LNL  N +              L  L++  N
Sbjct: 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619

Query: 216 SLVGNIP 222
                  
Sbjct: 620 PFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.0 bits (190), Expect = 2e-16
 Identities = 30/150 (20%), Positives = 53/150 (35%), Gaps = 14/150 (9%)

Query: 102 FNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVR 161
           F    + NL    +  N L +         L  L+   L  + +  +    +  L N+  
Sbjct: 242 FLGLKWTNLTMLDLSYNNL-NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300

Query: 162 LDLSDNY---------IGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNL 212
           L+L  ++         +      +   L  L+ LN+  N + G        L  LK L+L
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360

Query: 213 SSN--SLVGNIPPTLGHL--TQLTTLAMSN 238
           S++  SL      T   L  + L  L ++ 
Sbjct: 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTK 390

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 2/119 (1%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLD 163
                +L    + SN             L  L+ ++L  + L  +  S      +L  L+
Sbjct: 532 LKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 590

Query: 164 LSDNYIGGYIPPTLGR-LSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNI 221
           L  N I        G     L  L++  N            ++ +   + +   L  + 
Sbjct: 591 LQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 183 LKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
            ++ + S   L   +P  L   + + +LNL+ N L           +QLT+L +  
Sbjct: 6   HEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF 58

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 94.7 bits (236), Expect = 2e-22
 Identities = 28/145 (19%), Positives = 57/145 (39%), Gaps = 11/145 (7%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
           +      ++   I  N L +  + + +  +  L  LE   ++L G +P   G    L  L
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL 358

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIP--LTLCHLSKLKILNLSSNSLVG- 219
           +L+ N I        G   +++ L+ + N L   IP       +S +  ++ S N +   
Sbjct: 359 NLAYNQITEIPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSV 417

Query: 220 ------NIPPTLGHLTQLTTLAMSN 238
                  + PT      ++++ +SN
Sbjct: 418 DGKNFDPLDPTPFKGINVSSINLSN 442

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 89.3 bits (222), Expect = 1e-20
 Identities = 17/140 (12%), Positives = 48/140 (34%), Gaps = 15/140 (10%)

Query: 108 PNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDN 167
             L+ F + ++         E       +       +       +   L++L  +++ + 
Sbjct: 206 TKLRQFYMGNSPF-VAENICEAWENENSEYA-----QQYKTEDLKWDNLKDLTDVEVYNC 259

Query: 168 YIGGYIPPTLGRLSKLKILNLSSNFLV--------GNIPLTLCHLSKLKILNLSSNSL-V 218
                +P  L  L +++++N++ N  +                   K++I+ +  N+L  
Sbjct: 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319

Query: 219 GNIPPTLGHLTQLTTLAMSN 238
             +  +L  + +L  L    
Sbjct: 320 FPVETSLQKMKKLGMLECLY 339

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 87.8 bits (218), Expect = 3e-20
 Identities = 38/277 (13%), Positives = 71/277 (25%), Gaps = 61/277 (22%)

Query: 22  ISDKTIFVIASAAGLLSSPVQLEREALLITGWWY----DNWATSGNYTSDHCKWT----- 72
           + D  +   A     LS   +  ++ L +   W      NW+  G  T     W      
Sbjct: 7   VKDNALTDDAIVPIKLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKEL 66

Query: 73  -------GIRCNSAGSVIRVSL---------------------LWYENDNMKGELGRFNF 104
                  G+  NS G V  +SL                     L   +   K     F  
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 105 SCFPNLKSFKIHSNYL--LSGSIPSEITALSM--LQTLELPSSRLTGIIPSEMGRLRNLV 160
                  S +           +            L    + S      I           
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186

Query: 161 RLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVG-------------------NIPLTL 201
           ++    N I   +   + RL+KL+   + ++  V                       L  
Sbjct: 187 QIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW 245

Query: 202 CHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
            +L  L  + + +   +  +P  L  L ++  + ++ 
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 85.1 bits (211), Expect = 3e-19
 Identities = 28/148 (18%), Positives = 48/148 (32%), Gaps = 17/148 (11%)

Query: 104 FSCFPNLKSFKIHSNYL------LSGSIPSEITALSMLQTLELPSSRLTGIIPS-EMGRL 156
           FS    L S  +  N L                   +L +++L  ++LT +        L
Sbjct: 453 FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL 512

Query: 157 RNLVRLDLSDNYIGGYIPPTLGRLSKLKIL------NLSSNFLVGNIPLTLCHLSKLKIL 210
             LV +DLS N      P      S LK        +   N  +   P  +     L  L
Sbjct: 513 PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571

Query: 211 NLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
            + SN +   +   +     ++ L + +
Sbjct: 572 QIGSNDIRK-VNEKI--TPNISVLDIKD 596

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 85.1 bits (211), Expect = 3e-19
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 18/147 (12%)

Query: 108 PNLKSFKIHSNYLLSGSIPSEITA-LSMLQTLELPSSRLTGIIPS-EMGRLRNLVRLDLS 165
             L S  +  N +    IP+        ++ L    ++L  I    +   +  +  +D S
Sbjct: 353 IKLASLNLAYNQI--TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFS 410

Query: 166 DNYIGGY-------IPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV 218
            N IG         + PT  +   +  +NLS+N +           S L  +NL  N L 
Sbjct: 411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470

Query: 219 G-------NIPPTLGHLTQLTTLAMSN 238
                   +      +   LT++ +  
Sbjct: 471 EIPKNSLKDENENFKNTYLLTSIDLRF 497

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 79.3 bits (196), Expect = 3e-17
 Identities = 21/143 (14%), Positives = 43/143 (30%), Gaps = 14/143 (9%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITA--LSMLQTLELPSSRLTGIIPSEMGRLRNLV 160
           NF     L S  +  N L    +  +  A  L  L  ++L  +  +   P++      L 
Sbjct: 483 NFKNTYLLTSIDLRFNKL--TKLSDDFRATTLPYLVGIDLSYNSFSKF-PTQPLNSSTLK 539

Query: 161 RL------DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSS 214
                   D   N      P  +     L  L + SN +   +   +     + +L++  
Sbjct: 540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKD 596

Query: 215 NSLVGNIPPTLGHLTQLTTLAMS 237
           N  +      +    +     + 
Sbjct: 597 NPNISIDLSYVCPYIEAGMYMLF 619

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 71.2 bits (175), Expect = 2e-14
 Identities = 17/122 (13%), Positives = 39/122 (31%), Gaps = 11/122 (9%)

Query: 102 FNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSS------RLTGIIPSEMGR 155
           F  +  P L    +  N       P++    S L+   + +       R     P  +  
Sbjct: 507 FRATTLPYLVGIDLSYNSF--SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564

Query: 156 LRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSN 215
             +L +L +  N I   +   +     + +L++  N  +      +C   +  +  L  +
Sbjct: 565 CPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621

Query: 216 SL 217
             
Sbjct: 622 KT 623

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 91.5 bits (228), Expect = 4e-22
 Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 3/130 (2%)

Query: 109 NLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNY 168
           NL+S ++    + S  +P+ I  L  L++L++ +S L+ +    +  L  L  LDL    
Sbjct: 184 NLQSLRLEWTGIRS--LPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCT 240

Query: 169 IGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHL 228
                PP  G  + LK L L     +  +PL +  L++L+ L+L     +  +P  +  L
Sbjct: 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300

Query: 229 TQLTTLAMSN 238
                + +  
Sbjct: 301 PANCIILVPP 310

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.8 bits (213), Expect = 6e-20
 Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 5/140 (3%)

Query: 99  LGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN 158
           L   +    P L         L S     E   L  LQ+L L  + +  + P+ +  L+N
Sbjct: 152 LRELSIRACPELTEL---PEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQN 207

Query: 159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV 218
           L  L + ++ +   + P +  L KL+ L+L     + N P      + LK L L   S +
Sbjct: 208 LKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266

Query: 219 GNIPPTLGHLTQLTTLAMSN 238
             +P  +  LTQL  L +  
Sbjct: 267 LTLPLDIHRLTQLEKLDLRG 286

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 81.5 bits (202), Expect = 2e-18
 Identities = 27/148 (18%), Positives = 59/148 (39%), Gaps = 15/148 (10%)

Query: 103 NFSCFPNLKSFKIHSNYLLS-GSIPSEITALSM--LQTLELPSSRLTGIIPSEMGRLRNL 159
           +     N  + +I +    +  +    +   +      LEL S  L    P +  RL +L
Sbjct: 48  SAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHL 106

Query: 160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVG 219
             + +    +   +P T+ + + L+ L L+ N L   +P ++  L++L+ L++ +   + 
Sbjct: 107 QHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT 164

Query: 220 NIPPTLG---------HLTQLTTLAMSN 238
            +P  L           L  L +L +  
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEW 192

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.5 bits (189), Expect = 1e-16
 Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 3/117 (2%)

Query: 109 NLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNY 168
           NLKS KI ++ L +  +   I  L  L+ L+L         P   G    L RL L D  
Sbjct: 207 NLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264

Query: 169 IGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTL 225
               +P  + RL++L+ L+L     +  +P  +  L    I+ +  +     +    
Sbjct: 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ-AQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 54.2 bits (131), Expect = 7e-09
 Identities = 21/137 (15%), Positives = 37/137 (27%), Gaps = 23/137 (16%)

Query: 123 GSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYI--------- 173
           GS        S  + L    S         + + +     D +  +              
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE 61

Query: 174 ----------PPTLGRLS--KLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNI 221
                        L   +      L L S  L    P     LS L+ + + +  L+  +
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-EL 119

Query: 222 PPTLGHLTQLTTLAMSN 238
           P T+     L TL ++ 
Sbjct: 120 PDTMQQFAGLETLTLAR 136

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 91.2 bits (227), Expect = 2e-21
 Identities = 25/132 (18%), Positives = 41/132 (31%), Gaps = 1/132 (0%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSD 166
             + +  +   N L      +  + L  L  L+L   ++  I          L  L L+ 
Sbjct: 32  PNSTECLEFSFNVL-PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 167 NYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLG 226
           N +       L     LK L      +     + L +   L+ L L SN +     P   
Sbjct: 91  NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF 150

Query: 227 HLTQLTTLAMSN 238
              +L  L   N
Sbjct: 151 PTEKLKVLDFQN 162

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 90.5 bits (225), Expect = 5e-21
 Identities = 27/137 (19%), Positives = 45/137 (32%), Gaps = 1/137 (0%)

Query: 98  ELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLR 157
            +    FS   NL    +    +          +   L TL L ++ L  +  + +   +
Sbjct: 47  TIQNTTFSRLINLTFLDLTRCQI-YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105

Query: 158 NLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSL 217
            L  L      I       L     L+ L L SN +            KLK+L+  +N++
Sbjct: 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165

Query: 218 VGNIPPTLGHLTQLTTL 234
                  +  L Q T L
Sbjct: 166 HYLSKEDMSSLQQATNL 182

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.8 bits (213), Expect = 2e-19
 Identities = 31/156 (19%), Positives = 59/156 (37%), Gaps = 5/156 (3%)

Query: 86  SLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYL--LSGSIPSEITALSMLQTLELPSS 143
           SL +    N+         S   +L            +S ++   +  +S ++++ L   
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS-VESINLQKH 264

Query: 144 RLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCH 203
               I  +       L  LDL+  ++   +P  L  LS LK L LS+N       ++  +
Sbjct: 265 YFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASN 323

Query: 204 LSKLKILNLSSNSLVGNIPP-TLGHLTQLTTLAMSN 238
              L  L++  N+    +    L +L  L  L +S+
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 83.9 bits (208), Expect = 7e-19
 Identities = 35/150 (23%), Positives = 55/150 (36%), Gaps = 5/150 (3%)

Query: 94  NMKGELGRFNFSCFPNLKSFKIHSNYL-LSGSIPSEITALSMLQTLELPSSRLTGIIPSE 152
             + ELG        NL+   +  + +  S     ++  LS LQ+L L  +    +    
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395

Query: 153 MGRLRNLVRLDLSDNYIGGYIPPT-LGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILN 211
                 L  LDL+   +      +    L  LK+LNLS + L  +       L  L+ LN
Sbjct: 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455

Query: 212 LSSNSLVGNI---PPTLGHLTQLTTLAMSN 238
           L  N           +L  L +L  L +S 
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 83.9 bits (208), Expect = 9e-19
 Identities = 32/132 (24%), Positives = 46/132 (34%), Gaps = 3/132 (2%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLD 163
           F   P L+   +    L      S    L +L+ L L  S L          L  L  L+
Sbjct: 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455

Query: 164 LSDNYIGGYI---PPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGN 220
           L  N+          +L  L +L+IL LS   L          L  +  ++LS N L  +
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515

Query: 221 IPPTLGHLTQLT 232
               L HL  + 
Sbjct: 516 SIEALSHLKGIY 527

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.4 bits (204), Expect = 3e-18
 Identities = 32/144 (22%), Positives = 54/144 (37%), Gaps = 3/144 (2%)

Query: 98  ELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGI--IPSEMGR 155
            L + + S FP+L    I  N          +  L  L+ L+L    +        ++  
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

Query: 156 LRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLT-LCHLSKLKILNLSS 214
           L +L  L+LS N              +L++L+L+   L      +   +L  LK+LNLS 
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434

Query: 215 NSLVGNIPPTLGHLTQLTTLAMSN 238
           + L  +       L  L  L +  
Sbjct: 435 SLLDISSEQLFDGLPALQHLNLQG 458

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.0 bits (203), Expect = 4e-18
 Identities = 33/138 (23%), Positives = 49/138 (35%), Gaps = 5/138 (3%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMG---RLRNLV 160
           F     LK   +  + L   S       L  LQ L L  +        +      L  L 
Sbjct: 421 FQNLHLLKVLNLSHSLL-DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479

Query: 161 RLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGN 220
            L LS   +          L  +  ++LS N L  +    L HL  +  LNL+SN +   
Sbjct: 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISII 538

Query: 221 IPPTLGHLTQLTTLAMSN 238
           +P  L  L+Q  T+ +  
Sbjct: 539 LPSLLPILSQQRTINLRQ 556

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 75.4 bits (186), Expect = 7e-16
 Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 5/139 (3%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMG--RLRNLVR 161
            S      +  ++ N      I       ++ Q+L    ++   +I   +    +++L  
Sbjct: 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWL 232

Query: 162 LDLSDNYIGGYIPPTLGRLSK--LKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVG 219
               D       P     L +  ++ +NL  ++       T    S L+ L+L++  L  
Sbjct: 233 GTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-S 291

Query: 220 NIPPTLGHLTQLTTLAMSN 238
            +P  L  L+ L  L +S 
Sbjct: 292 ELPSGLVGLSTLKKLVLSA 310

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.8 bits (174), Expect = 3e-14
 Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 3/119 (2%)

Query: 104 FSCFPNLKSFKIHSNYL--LSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVR 161
           F   P L+   +  N+    +    + +  L  L+ L L    L+ I       L+ +  
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504

Query: 162 LDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGN 220
           +DLS N +       L  L  +  LNL+SN +   +P  L  LS+ + +NL  N L   
Sbjct: 505 VDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 91.1 bits (226), Expect = 3e-21
 Identities = 31/185 (16%), Positives = 61/185 (32%), Gaps = 29/185 (15%)

Query: 83  IRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPS 142
           + +S L  +  N   E+         +LK  +I +       I   I  L+ LQ +   +
Sbjct: 398 LNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFAN 457

Query: 143 SRLTGI-------------------IPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKL 183
           S  T                            L++L  ++L +      +P  L  L +L
Sbjct: 458 SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL 517

Query: 184 KILNLSSNFLVG---------NIPLTLCHLSKLKILNLSSNSLVG-NIPPTLGHLTQLTT 233
           + LN++ N  +           +        K++I  +  N+L       +L  + +L  
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577

Query: 234 LAMSN 238
           L   +
Sbjct: 578 LDCVH 582

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 85.3 bits (211), Expect = 3e-19
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 17/148 (11%)

Query: 104 FSCFPNLKSFKIHSNYLLS------GSIPSEITALSMLQTLELPSSRLTGIIPS-EMGRL 156
           F+    + +  + +N + S                 +L T++L  ++LT +        L
Sbjct: 693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL 752

Query: 157 RNLVRLDLSDNYIGGYIPPTLGRLSKLKILNL------SSNFLVGNIPLTLCHLSKLKIL 210
             L  +D+S N      P      S+LK   +        N ++   P  +     L  L
Sbjct: 753 PYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811

Query: 211 NLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
            + SN +   +   L    QL  L +++
Sbjct: 812 QIGSNDI-RKVDEKL--TPQLYILDIAD 836

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 81.1 bits (200), Expect = 9e-18
 Identities = 18/149 (12%), Positives = 48/149 (32%), Gaps = 15/149 (10%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPS-----EMGRLRN 158
            +    ++      N L          ++ ++ +++   +++     +     +  +  N
Sbjct: 615 CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674

Query: 159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFL-------VGNIPLTLCHLSKLKILN 211
              + LS N I  +        S +  + LS+N +       +        +   L  ++
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734

Query: 212 LSSNSLVGNIPPTL--GHLTQLTTLAMSN 238
           L  N L   +        L  L+ + +S 
Sbjct: 735 LRFNKLTS-LSDDFRATTLPYLSNMDVSY 762

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 79.5 bits (196), Expect = 3e-17
 Identities = 29/143 (20%), Positives = 48/143 (33%), Gaps = 16/143 (11%)

Query: 108 PNLKSFKIHSNYLLS--------GSIPSEITALSMLQTLELPSSRLTGIIPS-EMGRLRN 158
           P L+S  I  N  +S          +  +      +Q   +  + L     S  + ++  
Sbjct: 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK 574

Query: 159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLC-HLSKLKILNLSSNSL 217
           L  LD   N +        G   KL  L L  N +   IP   C    +++ L  S N L
Sbjct: 575 LGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL 631

Query: 218 VGNIPPT--LGHLTQLTTLAMSN 238
              IP       +  + ++  S 
Sbjct: 632 KY-IPNIFNAKSVYVMGSVDFSY 653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 76.1 bits (187), Expect = 5e-16
 Identities = 34/224 (15%), Positives = 68/224 (30%), Gaps = 50/224 (22%)

Query: 63  NYTSDHCKW---TGIRCNSAGSVIRVSL----LWYE----------------NDNMKGEL 99
           N+  +   W    G+  ++ G V  +SL                          + +   
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 100 GRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL 159
           GR            +   + +        +     L   +L    +      EM  ++  
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKKD 420

Query: 160 VRLDLSDNYIGGY------IPPTLGRLSKLKILNLSSNFLVG------------------ 195
            R+ L D  IG        I   + RL+KL+I+  +++                      
Sbjct: 421 SRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480

Query: 196 -NIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
            N  L+  +L  L  + L +   +  +P  L  L +L +L ++ 
Sbjct: 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.9 bits (184), Expect = 1e-15
 Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 15/146 (10%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITA--LSMLQTLELPSSRLTGIIPSEMGRLRNLV 160
           N+     L +  +  N L   S+  +  A  L  L  +++  +  +   P++      L 
Sbjct: 723 NYKNTYLLTTIDLRFNKL--TSLSDDFRATTLPYLSNMDVSYNCFSSF-PTQPLNSSQLK 779

Query: 161 RLDL------SDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSS 214
              +        N I    P  +     L  L + SN +   +   L    +L IL+++ 
Sbjct: 780 AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIAD 836

Query: 215 NSL-VGNIPPTLGHLTQLTTLAMSNK 239
           N     ++     ++     + + +K
Sbjct: 837 NPNISIDVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 73.4 bits (180), Expect = 4e-15
 Identities = 24/143 (16%), Positives = 46/143 (32%), Gaps = 12/143 (8%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLD 163
               P ++ F +  N L      + +  +  L  L+   +++  +     G    L  L 
Sbjct: 544 EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL--EAFGTNVKLTDLK 601

Query: 164 LSDNYIGGYIPPTLGR-LSKLKILNLSSNFLVGNIP--LTLCHLSKLKILNLSSNSLVGN 220
           L  N I   IP        +++ L  S N L   IP       +  +  ++ S N +   
Sbjct: 602 LDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSE 659

Query: 221 IP-----PTLGHLTQLTTLAMSN 238
                           +T+ +S 
Sbjct: 660 GRNISCSMDDYKGINASTVTLSY 682

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.0 bits (166), Expect = 2e-13
 Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 11/122 (9%)

Query: 102 FNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLEL------PSSRLTGIIPSEMGR 155
           F  +  P L +  +  N     S P++    S L+   +        +R+    P+ +  
Sbjct: 747 FRATTLPYLSNMDVSYNCF--SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT 804

Query: 156 LRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSN 215
             +L++L +  N I   +   L    +L IL+++ N  +     ++C   +  +  L  +
Sbjct: 805 CPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYD 861

Query: 216 SL 217
             
Sbjct: 862 KT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 1e-09
 Identities = 15/118 (12%), Positives = 37/118 (31%), Gaps = 1/118 (0%)

Query: 121 LSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRL 180
            +  I       ++ + L+  + R      +      N    +   +  G      L   
Sbjct: 264 TAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNW-NFNKELDMWGDQPGVDLDNN 322

Query: 181 SKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
            ++  L+L+     G +P  +  L++LK+L+  ++S   +                  
Sbjct: 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 88.9 bits (221), Expect = 2e-20
 Identities = 29/139 (20%), Positives = 49/139 (35%), Gaps = 4/139 (2%)

Query: 102 FNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIP-SEMGRLRNLV 160
           ++     +L+   +  N  +   + +    L  LQ L+   S L  +   S    L  L+
Sbjct: 370 YSDLGTNSLRHLDLSFNGAII--MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427

Query: 161 RLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIP-LTLCHLSKLKILNLSSNSLVG 219
            LD+S              L+ L  L ++ N    N       + + L  L+LS   L  
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487

Query: 220 NIPPTLGHLTQLTTLAMSN 238
                   L +L  L MS+
Sbjct: 488 ISWGVFDTLHRLQLLNMSH 506

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 88.2 bits (219), Expect = 3e-20
 Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 2/133 (1%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSD 166
             + K+  +  N L         +  S LQ L+L    +  I       L +L  L L+ 
Sbjct: 31  PSSTKNIDLSFNPL-KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89

Query: 167 NYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVG-NIPPTL 225
           N I  + P +   L+ L+ L      L       +  L  LK LN++ N +    +P   
Sbjct: 90  NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149

Query: 226 GHLTQLTTLAMSN 238
            +LT L  + +S 
Sbjct: 150 SNLTNLVHVDLSY 162

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 86.6 bits (215), Expect = 1e-19
 Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 2/141 (1%)

Query: 98  ELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLR 157
            L  ++FS F  L+   +    +           L  L  L L  + +    P     L 
Sbjct: 46  ILKSYSFSNFSELQWLDLSRCEI-ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104

Query: 158 NLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVG-NIPLTLCHLSKLKILNLSSNS 216
           +L  L   +  +       +G+L  LK LN++ NF+    +P    +L+ L  ++LS N 
Sbjct: 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164

Query: 217 LVGNIPPTLGHLTQLTTLAMS 237
           +       L  L +   + +S
Sbjct: 165 IQTITVNDLQFLRENPQVNLS 185

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 85.1 bits (211), Expect = 3e-19
 Identities = 28/136 (20%), Positives = 44/136 (32%), Gaps = 2/136 (1%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEM-GRLRNLVRL 162
           F     L    I                L+ L TL++  +       S +     NL  L
Sbjct: 420 FLSLEKLLYLDISYTNT-KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
           DLS   +          L +L++LN+S N L+         L  L  L+ S N +  +  
Sbjct: 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

Query: 223 PTLGHLTQLTTLAMSN 238
                   L    ++N
Sbjct: 539 ILQHFPKSLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 84.7 bits (210), Expect = 4e-19
 Identities = 26/138 (18%), Positives = 43/138 (31%), Gaps = 6/138 (4%)

Query: 105 SCFPNLKSFKIHSNYLLSG----SIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLV 160
                      +  Y         +P +I   S  + ++L  + L  +          L 
Sbjct: 2   GSLNPCIEVVPNITYQCMDQKLSKVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQ 59

Query: 161 RLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGN 220
            LDLS   I          L  L  L L+ N +    P +   L+ L+ L      L   
Sbjct: 60  WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL 119

Query: 221 IPPTLGHLTQLTTLAMSN 238
               +G L  L  L +++
Sbjct: 120 ESFPIGQLITLKKLNVAH 137

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.4 bits (204), Expect = 2e-18
 Identities = 31/140 (22%), Positives = 49/140 (35%), Gaps = 4/140 (2%)

Query: 102 FNFSCFPNLKSFKIHSNYL-LSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLV 160
           F     P+L    +  N L  SG         + L+ L+L  +    I+ +    L  L 
Sbjct: 344 FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQ 402

Query: 161 RLDLSDNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVG 219
            LD   + +           L KL  L++S      +       L+ L  L ++ NS   
Sbjct: 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462

Query: 220 NIPP-TLGHLTQLTTLAMSN 238
           N       + T LT L +S 
Sbjct: 463 NTLSNVFANTTNLTFLDLSK 482

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 79.3 bits (196), Expect = 3e-17
 Identities = 24/114 (21%), Positives = 44/114 (38%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLD 163
           F    +L + K+  N     ++ +     + L  L+L   +L  I       L  L  L+
Sbjct: 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503

Query: 164 LSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSL 217
           +S N +         +L  L  L+ S N +  +  +       L   NL++NS+
Sbjct: 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.8 bits (174), Expect = 3e-14
 Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 11/149 (7%)

Query: 92  NDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPS 151
                       F C  N+ +  +    +       ++      Q+L +   +L      
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSI---KYLEDVPKHFKWQSLSIIRCQLKQFPTL 325

Query: 152 EMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFL--VGNIPLTLCHLSKLKI 209
           +   L  L  L L+ N     I      L  L  L+LS N L   G    +    + L+ 
Sbjct: 326 D---LPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH 380

Query: 210 LNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
           L+LS N  +  +      L +L  L   +
Sbjct: 381 LDLSFNGAII-MSANFMGLEELQHLDFQH 408

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.1 bits (172), Expect = 4e-14
 Identities = 32/142 (22%), Positives = 54/142 (38%), Gaps = 12/142 (8%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL---- 159
                 LK   +  N++ S  +P+  + L+ L  ++L  + +  I  +++  LR      
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183

Query: 160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCH-LSKLKILNLSSNSLV 218
           + LD+S N I  +I     +  KL  L L  NF   NI  T    L+ L +  L      
Sbjct: 184 LSLDMSLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242

Query: 219 GNI------PPTLGHLTQLTTL 234
                    P  +  L  +T  
Sbjct: 243 DERNLEIFEPSIMEGLCDVTID 264

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.3 bits (139), Expect = 7e-10
 Identities = 24/132 (18%), Positives = 41/132 (31%), Gaps = 9/132 (6%)

Query: 109 NLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSR--LTGIIPSEMGRLRNLVRLDLSD 166
            L   +      L    PS +  L  +   E   +          +   L N+  + L+ 
Sbjct: 235 RLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294

Query: 167 NYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLG 226
             I       + +  K + L++    L          L  LK L L+ N    +I     
Sbjct: 295 VSIKY--LEDVPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKG--SISFKKV 347

Query: 227 HLTQLTTLAMSN 238
            L  L+ L +S 
Sbjct: 348 ALPSLSYLDLSR 359

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 18/140 (12%), Positives = 40/140 (28%), Gaps = 13/140 (9%)

Query: 108 PNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGR-LRNLVRLDLSD 166
               S  +  N +    I  +      L  L L  +  +  I     + L  L    L  
Sbjct: 181 QVNLSLDMSLNPI--DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238

Query: 167 NYIGGYI------PPTLGRLSKLKI--LNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV 218
                        P  +  L  + I    L+      +  +    L+ +  ++L+  S+ 
Sbjct: 239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI- 297

Query: 219 GNIPPTLGHLTQLTTLAMSN 238
                 +    +  +L++  
Sbjct: 298 -KYLEDVPKHFKWQSLSIIR 316

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 80.1 bits (198), Expect = 1e-17
 Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 2/133 (1%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSD 166
             + K+  +  N L          +   LQ L+L    +  I       L +L  L L+ 
Sbjct: 27  PFSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 167 NYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSL-VGNIPPTL 225
           N I          LS L+ L      L       + HL  LK LN++ N +    +P   
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 226 GHLTQLTTLAMSN 238
            +LT L  L +S+
Sbjct: 146 SNLTNLEHLDLSS 158

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.1 bits (190), Expect = 2e-16
 Identities = 32/137 (23%), Positives = 48/137 (35%), Gaps = 1/137 (0%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
           NF     L+      + L   S  S   +L  L  L++  +            L +L  L
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

Query: 163 DLSDNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNI 221
            ++ N       P     L  L  L+LS   L    P     LS L++LN++SN L    
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510

Query: 222 PPTLGHLTQLTTLAMSN 238
                 LT L  + +  
Sbjct: 511 DGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.4 bits (183), Expect = 1e-15
 Identities = 27/115 (23%), Positives = 40/115 (34%), Gaps = 2/115 (1%)

Query: 124 SIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKL 183
            IP  +      + L+L  + L  +          L  LDLS   I          LS L
Sbjct: 21  KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 184 KILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
             L L+ N +          LS L+ L     +L       +GHL  L  L +++
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 66.3 bits (162), Expect = 8e-13
 Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 11/137 (8%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLD 163
           F+C  N+ SF + S  +      S       L+ +     +   +      +L++L RL 
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL------KLKSLKRLT 331

Query: 164 LSDNYIGGYIPPTLGRLSKLKILNLSSNFL--VGNIPLTLCHLSKLKILNLSSNSLVGNI 221
            + N  G     +   L  L+ L+LS N L   G    +    + LK L+LS N ++  +
Sbjct: 332 FTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TM 388

Query: 222 PPTLGHLTQLTTLAMSN 238
                 L QL  L   +
Sbjct: 389 SSNFLGLEQLEHLDFQH 405

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 9/143 (6%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL---- 159
                 LK   +  N + S  +P   + L+ L+ L+L S+++  I  +++  L  +    
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCH-LSKLKILNLSSNSLV 218
           + LDLS N +  +I P   +  +L  L L +NF   N+  T    L+ L++  L      
Sbjct: 180 LSLDLSLNPM-NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 219 GN---IPPTLGHLTQLTTLAMSN 238
                       L  L  L +  
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEE 261

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.7 bits (150), Expect = 3e-11
 Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEM-GRLRNLVR 161
           F    NL    I   +       + I   LS L+ L++  +        ++   LRNL  
Sbjct: 417 FLSLRNLIYLDISHTHTRV--AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 162 LDLSDNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGN 220
           LDLS   +   + P     LS L++LN++SN L          L+ L+ + L +N    +
Sbjct: 475 LDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533

Query: 221 IP 222
            P
Sbjct: 534 CP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.5 bits (147), Expect = 7e-11
 Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 10/139 (7%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
           +FS     +  ++ +     G  P+    L  L+ L   S++           L +L  L
Sbjct: 299 DFSYNFGWQHLELVNCKF--GQFPTL--KLKSLKRLTFTSNKGGNAFSEV--DLPSLEFL 352

Query: 163 DLSDNYIG--GYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGN 220
           DLS N +   G    +    + LK L+LS N ++  +      L +L+ L+   ++L   
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQM 411

Query: 221 IPP-TLGHLTQLTTLAMSN 238
                   L  L  L +S+
Sbjct: 412 SEFSVFLSLRNLIYLDISH 430

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.9 bits (190), Expect = 2e-17
 Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 6/136 (4%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
                 N+K   I++ +    +  + I+ LS L+ L +    +T      +  L +L  L
Sbjct: 61  GIEYAHNIKDLTINNIHA---TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
           D+S +     I   +  L K+  ++LS N  + +I   L  L +LK LN+  + +  +  
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-DYR 175

Query: 223 PTLGHLTQLTTLAMSN 238
             +    +L  L   +
Sbjct: 176 G-IEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.5 bits (176), Expect = 1e-15
 Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 3/112 (2%)

Query: 127 SEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKIL 186
           + I     ++ L + +   T    + +  L NL RL +    +     P L  L+ L +L
Sbjct: 60  TGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117

Query: 187 NLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
           ++S +    +I   +  L K+  ++LS N  + +I P L  L +L +L +  
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQF 168

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.6 bits (145), Expect = 3e-11
 Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 4/113 (3%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
             S   NL+  +I    + +      ++ L+ L  L++  S     I +++  L  +  +
Sbjct: 83  PISGLSNLERLRIMGKDV-TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSN 215
           DLS N     I P L  L +LK LN+  + +     +      KL  L   S 
Sbjct: 142 DLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 7/109 (6%)

Query: 130 TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLS 189
           +         L  S    I  ++   + +L  + L++  +       +     +K L ++
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQ---MNSLTYITLANINVTDLTG--IEYAHNIKDLTIN 74

Query: 190 SNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
           +       P++   LS L+ L +    +  +  P L  LT LT L +S+
Sbjct: 75  NIHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 76.8 bits (190), Expect = 1e-16
 Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 10/136 (7%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
             +    + S  + +N+ LS    S ++ ++ L  L +  S++  + P  +  L +L  L
Sbjct: 127 PLANLTKMYSLNLGANHNLS--DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSL 182

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
            L+ N I    P  L  L+ L       N +    P  + ++++L  L + +N +  ++ 
Sbjct: 183 SLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLS 237

Query: 223 PTLGHLTQLTTLAMSN 238
           P L +L+QLT L +  
Sbjct: 238 P-LANLSQLTWLEIGT 252

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 76.8 bits (190), Expect = 1e-16
 Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 10/136 (7%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
             S    L +  I +N +   +  S +  L+ L+ L L    ++ I P  +  L  +  L
Sbjct: 83  PLSNLVKLTNLYIGTNKI---TDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSL 137

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
           +L  N+        L  ++ L  L ++ + +    P+   +L+ L  L+L+ N +    P
Sbjct: 138 NLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTPIA--NLTDLYSLSLNYNQIEDISP 194

Query: 223 PTLGHLTQLTTLAMSN 238
             L  LT L       
Sbjct: 195 --LASLTSLHYFTAYV 208

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 76.4 bits (189), Expect = 2e-16
 Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 10/136 (7%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
                 ++    +    + S      I  L+ L+ L L  +++T I P  +  L  L  L
Sbjct: 39  TQEELESITKLVVAGEKVAS---IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNL 93

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
            +  N I       L  L+ L+ L L+ + +    PL   +L+K+  LNL +N  + ++ 
Sbjct: 94  YIGTNKIT--DISALQNLTNLRELYLNEDNISDISPLA--NLTKMYSLNLGANHNLSDLS 149

Query: 223 PTLGHLTQLTTLAMSN 238
           P L ++T L  L ++ 
Sbjct: 150 P-LSNMTGLNYLTVTE 164

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 75.3 bits (186), Expect = 4e-16
 Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 9/136 (6%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
             +   +L  F  + N +   +  + +  ++ L +L++ ++++T + P  +  L  L  L
Sbjct: 194 PLASLTSLHYFTAYVNQI---TDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWL 248

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
           ++  N I       +  L+KLK+LN+ SN +  +I   L +LS+L  L L++N L     
Sbjct: 249 EIGTNQISD--INAVKDLTKLKMLNVGSNQI-SDIS-VLNNLSQLNSLFLNNNQLGNEDM 304

Query: 223 PTLGHLTQLTTLAMSN 238
             +G LT LTTL +S 
Sbjct: 305 EVIGGLTNLTTLFLSQ 320

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 73.3 bits (181), Expect = 2e-15
 Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 9/136 (6%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
             +    L S KI +N +   +  S +  LS L  LE+ +++++ I  + +  L  L  L
Sbjct: 216 PVANMTRLNSLKIGNNKI---TDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKML 270

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
           ++  N I       L  LS+L  L L++N L       +  L+ L  L LS N +  +I 
Sbjct: 271 NVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI-TDIR 327

Query: 223 PTLGHLTQLTTLAMSN 238
           P L  L+++ +   +N
Sbjct: 328 P-LASLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.0 bits (162), Expect = 6e-13
 Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 7/115 (6%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
             +    L   +I +N +   S  + +  L+ L+ L + S++++ I  S +  L  L  L
Sbjct: 238 PLANLSQLTWLEIGTNQI---SDINAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSL 292

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSL 217
            L++N +G      +G L+ L  L LS N +    PL    LSK+   + ++  +
Sbjct: 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA--SLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.1 bits (157), Expect = 3e-12
 Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 127 SEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKIL 186
                L+      L  + +T ++      L ++ +L ++   +       +  L+ L+ L
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGIEYLTNLEYL 71

Query: 187 NLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
           NL+ N +    PL+  +L KL  L + +N +       L +LT L  L ++ 
Sbjct: 72  NLNGNQITDISPLS--NLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNE 119

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.9 bits (141), Expect = 3e-10
 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 8/104 (7%)

Query: 135 LQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLV 194
             TL    + +  I P     L   +R  L    +      T   L  +  L ++   + 
Sbjct: 2   AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKV- 56

Query: 195 GNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
            +I   + +L+ L+ LNL+ N +  +I P L +L +LT L +  
Sbjct: 57  ASIQ-GIEYLTNLEYLNLNGNQI-TDISP-LSNLVKLTNLYIGT 97

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 76.2 bits (188), Expect = 2e-16
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 7/115 (6%)

Query: 124 SIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKL 183
           +I       +  +  ++  S L   + S      N+  LDLS N +       L   +KL
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 184 KILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
           ++LNLSSN L   + L    LS L+ L+L++N +       L     + TL  +N
Sbjct: 61  ELLNLSSNVLYETLDLE--SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAAN 108

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.8 bits (187), Expect = 2e-16
 Identities = 26/148 (17%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 92  NDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPS 151
            +N    L   +  C   ++   +  N + + +      +   L+ L L  + +   +  
Sbjct: 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG 186

Query: 152 EMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILN 211
           ++     L  LDLS N +  ++ P     + +  ++L +N LV  I   L     L+  +
Sbjct: 187 QVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFD 243

Query: 212 LSSNSLV-GNIPPTLGHLTQLTTLAMSN 238
           L  N    G +        ++ T+A   
Sbjct: 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQT 271

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 69.6 bits (171), Expect = 3e-14
 Identities = 24/131 (18%), Positives = 56/131 (42%), Gaps = 11/131 (8%)

Query: 108 PNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDN 167
              K  K+  + L   ++ S   +   ++ L+L  + L+ I  +++     L  L+LS N
Sbjct: 10  NRYKIEKVTDSSL-KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 168 YIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGH 227
            +       L  LS L+ L+L++N++       L     ++ L+ ++N++   +      
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-SRVSC--SR 118

Query: 228 LTQLTTLAMSN 238
                 + ++N
Sbjct: 119 GQGKKNIYLAN 129

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 69.6 bits (171), Expect = 3e-14
 Identities = 25/137 (18%), Positives = 57/137 (41%), Gaps = 12/137 (8%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
           +      L++  +++NY+       E+     ++TL   ++ ++ +      R +    +
Sbjct: 75  DLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNISRV---SCSRGQGKKNI 125

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVG-NIPLTLCHLSKLKILNLSSNSLVGNI 221
            L++N I        G  S+++ L+L  N +   N          L+ LNL  N +  ++
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DV 184

Query: 222 PPTLGHLTQLTTLAMSN 238
              +    +L TL +S+
Sbjct: 185 KGQV-VFAKLKTLDLSS 200

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 75.9 bits (187), Expect = 4e-16
 Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 5/149 (3%)

Query: 92  NDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIP 150
           ++N    L  + F    NLKS ++  N L    I     + L+ L+ L L    LT I  
Sbjct: 112 SENKIVILLDYMFQDLYNLKSLEVGDNDL--VYISHRAFSGLNSLEQLTLEKCNLTSIPT 169

Query: 151 SEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKIL 210
             +  L  L+ L L    I      +  RL +LK+L +S    +  +     +   L  L
Sbjct: 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL 229

Query: 211 NLSSNSLVGNIPP-TLGHLTQLTTLAMSN 238
           +++  +L   +P   + HL  L  L +S 
Sbjct: 230 SITHCNLT-AVPYLAVRHLVYLRFLNLSY 257

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 73.6 bits (181), Expect = 2e-15
 Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 7/150 (4%)

Query: 92  NDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIP 150
             N    L +  F+ FP+L+  +++ N +   ++       L  L+TL L S+RL  I  
Sbjct: 40  GKNRIKTLNQDEFASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLGLRSNRLKLIPL 97

Query: 151 SEMGRLRNLVRLDLSDNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKI 209
                L NL +LD+S+N I   +       L  LK L +  N LV         L+ L+ 
Sbjct: 98  GVFTGLSNLTKLDISENKI-VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156

Query: 210 LNLSSNSLVGNIPP-TLGHLTQLTTLAMSN 238
           L L   +L  +IP   L HL  L  L + +
Sbjct: 157 LTLEKCNLT-SIPTEALSHLHGLIVLRLRH 185

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 71.3 bits (175), Expect = 2e-14
 Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 8/136 (5%)

Query: 105 SCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDL 164
            C    ++   H    ++  +P  I   +  + L+L  +R+  +   E     +L  L+L
Sbjct: 8   ECSAQDRAVLCHRKRFVA--VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELEL 63

Query: 165 SDNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPP 223
           ++N +   + P     L  L+ L L SN L          LS L  L++S N +V  +  
Sbjct: 64  NENIV-SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLD 121

Query: 224 -TLGHLTQLTTLAMSN 238
                L  L +L + +
Sbjct: 122 YMFQDLYNLKSLEVGD 137

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.5 bits (160), Expect = 1e-12
 Identities = 33/143 (23%), Positives = 55/143 (38%), Gaps = 5/143 (3%)

Query: 98  ELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLR 157
            +  ++F     LK  +I     L  ++         L +L +    LT +    +  L 
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLD-TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248

Query: 158 NLVRLDLSDNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNS 216
            L  L+LS N I   I    L  L +L+ + L    L    P     L+ L++LN+S N 
Sbjct: 249 YLRFLNLSYNPI-STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307

Query: 217 LVGNIPP-TLGHLTQLTTLAMSN 238
           L   +       +  L TL + +
Sbjct: 308 LT-TLEESVFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
                 L+   +  N +   +I   +   L  LQ ++L   +L  + P     L  L  L
Sbjct: 244 VRHLVYLRFLNLSYNPI--STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL 301

Query: 163 DLSDNYIGGYIPP-TLGRLSKLKILNLSSNFLV 194
           ++S N +   +       +  L+ L L SN L 
Sbjct: 302 NVSGNQL-TTLEESVFHSVGNLETLILDSNPLA 333

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 75.4 bits (186), Expect = 5e-16
 Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 11/136 (8%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
             +    L+   I SN +   S  S +  L+ L++L   +++++ I P  +G L NL  L
Sbjct: 172 PLANLTTLERLDISSNKV---SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 226

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
            L+ N +      TL  L+ L  L+L++N +    P  L  L+KL  L L +N +    P
Sbjct: 227 SLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282

Query: 223 PTLGHLTQLTTLAMSN 238
             L  LT LT L ++ 
Sbjct: 283 --LAGLTALTNLELNE 296

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 73.1 bits (180), Expect = 4e-15
 Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 11/138 (7%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
           + +    + + +     +        +  L+ L  +   +++LT I P  +  L  LV +
Sbjct: 41  SQTDLDQVTTLQADRLGI---KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDI 95

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
            +++N I    P  L  L+ L  L L +N +    PL   +L+ L  L LSSN++     
Sbjct: 96  LMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISD--I 149

Query: 223 PTLGHLTQLTTLAMSNKV 240
             L  LT L  L+  N+V
Sbjct: 150 SALSGLTSLQQLSFGNQV 167

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 71.9 bits (177), Expect = 8e-15
 Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 11/136 (8%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
                 NL    ++ N L        + +L+ L  L+L +++++ + P  +  L  L  L
Sbjct: 216 PLGILTNLDELSLNGNQL---KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 270

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
            L  N I    P  L  L+ L  L L+ N L    P  + +L  L  L L  N++    P
Sbjct: 271 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326

Query: 223 PTLGHLTQLTTLAMSN 238
             +  LT+L  L   N
Sbjct: 327 --VSSLTKLQRLFFYN 340

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 71.1 bits (175), Expect = 2e-14
 Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 11/137 (8%)

Query: 102 FNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVR 161
           F  +         +    +   +     T L  + TL+     +  I    +  L NL +
Sbjct: 18  FTDTALAEKMKTVLGKTNV---TDTVSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQ 72

Query: 162 LDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNI 221
           ++ S+N +    P  L  L+KL  + +++N +    PL   +L+ L  L L +N +    
Sbjct: 73  INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQI--TD 126

Query: 222 PPTLGHLTQLTTLAMSN 238
              L +LT L  L +S+
Sbjct: 127 IDPLKNLTNLNRLELSS 143

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 69.6 bits (171), Expect = 6e-14
 Identities = 26/136 (19%), Positives = 53/136 (38%), Gaps = 9/136 (6%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
             +    L + +++ N L      S I+ L  L  L L  + ++ I P  +  L  L RL
Sbjct: 282 PLAGLTALTNLELNENQL---EDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
              +N +      +L  L+ +  L+   N +    PL   +L+++  L L+  +      
Sbjct: 337 FFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA--NLTRITQLGLNDQAWTNAPV 392

Query: 223 PTLGHLTQLTTLAMSN 238
               +++   T+    
Sbjct: 393 NYKANVSIPNTVKNVT 408

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 69.2 bits (170), Expect = 7e-14
 Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 12/136 (8%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
                 NL   ++ SN +   S  S ++ L+ LQ L    +++T + P  +  L  L RL
Sbjct: 129 PLKNLTNLNRLELSSNTI---SDISALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERL 182

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
           D+S N +       L +L+ L+ L  ++N +    P  L  L+ L  L+L+ N L     
Sbjct: 183 DISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--I 236

Query: 223 PTLGHLTQLTTLAMSN 238
            TL  LT LT L ++N
Sbjct: 237 GTLASLTNLTDLDLAN 252

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.7 bits (140), Expect = 5e-10
 Identities = 26/132 (19%), Positives = 52/132 (39%), Gaps = 9/132 (6%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
             S   NL    ++ N +   S  S +++L+ LQ L   +++++ +  S +  L N+  L
Sbjct: 304 PISNLKNLTYLTLYFNNI---SDISPVSSLTKLQRLFFYNNKVSDV--SSLANLTNINWL 358

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
               N I    P  L  L+++  L L+             ++S    +   + +L+   P
Sbjct: 359 SAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--AP 414

Query: 223 PTLGHLTQLTTL 234
            T+      T  
Sbjct: 415 ATISDGGSYTEP 426

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 17/115 (14%), Positives = 41/115 (35%), Gaps = 7/115 (6%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
             S    L+    ++N +   S  S +  L+ +  L    ++++ + P  +  L  + +L
Sbjct: 326 PVSSLTKLQRLFFYNNKV---SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 380

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSL 217
            L+D             +S    +   +  L+   P T+         +++ N  
Sbjct: 381 GLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLP 433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 75.3 bits (185), Expect = 7e-16
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 7/115 (6%)

Query: 124 SIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKL 183
           +I       +  +  ++  S L   + S      N+  LDLS N +       L   +KL
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 184 KILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
           ++LNLSSN L   + L    LS L+ L+L++N +       L     + TL  +N
Sbjct: 61  ELLNLSSNVLYETLDLE--SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAAN 108

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 74.5 bits (183), Expect = 1e-15
 Identities = 26/148 (17%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 92  NDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPS 151
            +N    L   +  C   ++   +  N + + +      +   L+ L L  + +   +  
Sbjct: 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG 186

Query: 152 EMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILN 211
           ++     L  LDLS N +  ++ P     + +  ++L +N LV  I   L     L+  +
Sbjct: 187 QVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFD 243

Query: 212 LSSNSLV-GNIPPTLGHLTQLTTLAMSN 238
           L  N    G +        ++ T+A   
Sbjct: 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQT 271

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 68.7 bits (168), Expect = 1e-13
 Identities = 26/137 (18%), Positives = 58/137 (42%), Gaps = 12/137 (8%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
           +      L++  +++NY+       E+     ++TL   ++ ++ +  S   R +    +
Sbjct: 75  DLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNISRVSCS---RGQGKKNI 125

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVG-NIPLTLCHLSKLKILNLSSNSLVGNI 221
            L++N I        G  S+++ L+L  N +   N          L+ LNL  N +  ++
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DV 184

Query: 222 PPTLGHLTQLTTLAMSN 238
              +    +L TL +S+
Sbjct: 185 KGQVV-FAKLKTLDLSS 200

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 68.7 bits (168), Expect = 1e-13
 Identities = 24/131 (18%), Positives = 56/131 (42%), Gaps = 11/131 (8%)

Query: 108 PNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDN 167
              K  K+  + L   ++ S   +   ++ L+L  + L+ I  +++     L  L+LS N
Sbjct: 10  NRYKIEKVTDSSL-KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 168 YIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGH 227
            +       L  LS L+ L+L++N++       L     ++ L+ ++N++   +      
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-SRVSC--SR 118

Query: 228 LTQLTTLAMSN 238
                 + ++N
Sbjct: 119 GQGKKNIYLAN 129

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 16/139 (11%), Positives = 34/139 (24%), Gaps = 6/139 (4%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLD 163
                NL+ F +  N    G++    +    +QT+      +  +               
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV--AKQTVKKLTGQNEEECTVPTLGH 290

Query: 164 LSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGN----IPLTLCHLSKLKILNLSSNSLVG 219
                      P   RL  LK    +     G+    +     + ++ + ++        
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT 350

Query: 220 NIPPTLGHLTQLTTLAMSN 238
            I           TL    
Sbjct: 351 VIDQVTLRKQAKITLEQKK 369

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.5 bits (181), Expect = 1e-15
 Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 6/139 (4%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
           F     L    + SN L      S+     + L+ L+L  + +   + S    L  L  L
Sbjct: 48  FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106

Query: 163 DLSDNYIGGYIPP--TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGN 220
           D   + +   +        L  L  L++S              LS L++L ++ NS   N
Sbjct: 107 DFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165

Query: 221 IPP-TLGHLTQLTTLAMSN 238
             P     L  LT L +S 
Sbjct: 166 FLPDIFTELRNLTFLDLSQ 184

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.4 bits (173), Expect = 1e-14
 Identities = 32/137 (23%), Positives = 46/137 (33%), Gaps = 1/137 (0%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
           NF     L+      + L   S  S   +L  L  L++  +            L +L  L
Sbjct: 96  NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155

Query: 163 DLSDNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNI 221
            ++ N       P     L  L  L+LS   L    P     LS L++LN+S N+     
Sbjct: 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215

Query: 222 PPTLGHLTQLTTLAMSN 238
                 L  L  L  S 
Sbjct: 216 TFPYKCLNSLQVLDYSL 232

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.0 bits (164), Expect = 3e-13
 Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 8/119 (6%)

Query: 124 SIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYI--GGYIPPTLGRLS 181
           S+P+ I   S    LEL S++L  +      +L  L +L LS N +   G    +    +
Sbjct: 21  SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 182 KLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPP--TLGHLTQLTTLAMSN 238
            LK L+LS N ++  +      L +L+ L+   ++L   +        L  L  L +S+
Sbjct: 79  SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISH 135

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 1/115 (0%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLD 163
           F+   +L+  K+  N      +P   T L  L  L+L   +L  + P+    L +L  L+
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 164 LSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHL-SKLKILNLSSNSL 217
           +S N            L+ L++L+ S N ++ +    L H  S L  LNL+ N  
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.0 bits (177), Expect = 7e-15
 Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 19/156 (12%)

Query: 98  ELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSM---------------LQTLELPS 142
            L   + S  P+L    +  N L + +IP  +  L                 L  L+L  
Sbjct: 176 RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQH 235

Query: 143 SRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLC 202
           + LT    + +     LV +DLS N +   +     ++ +L+ L +S+N LV  + L   
Sbjct: 236 NNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ 292

Query: 203 HLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
            +  LK+L+LS N L+ ++        +L  L + +
Sbjct: 293 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 327

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 67.4 bits (165), Expect = 3e-13
 Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 5/138 (3%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
           N           I            +IT L+  + +   +S +  +  + +   R +  L
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDIT-LNNQKIVTFKNSTMRKLPAALLDSFRQVELL 74

Query: 163 DLSDNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNI 221
           +L+D  I   I          ++ L +  N +    P    ++  L +L L  N L  ++
Sbjct: 75  NLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SL 132

Query: 222 PP-TLGHLTQLTTLAMSN 238
           P     +  +LTTL+MSN
Sbjct: 133 PRGIFHNTPKLTTLSMSN 150

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 17/117 (14%), Positives = 42/117 (35%), Gaps = 4/117 (3%)

Query: 124 SIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPP-TLGRLSK 182
            I S +    +   + +           E   L N   +   ++ +   +P   L    +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-RKLPAALLDSFRQ 70

Query: 183 LKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPP-TLGHLTQLTTLAMSN 238
           +++LNL+   +         +   ++ L +  N++   +PP    ++  LT L +  
Sbjct: 71  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLER 126

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 8/118 (6%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
              +P L    +  N L    I       +  L+ L + ++RL   +      +  L  L
Sbjct: 244 LLNYPGLVEVDLSYNEL--EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVL 300

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGN 220
           DLS N++  ++     +  +L+ L L  N +V  + L+      LK L LS N    N
Sbjct: 301 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWDCN 354

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 57.4 bits (139), Expect = 7e-10
 Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 14/136 (10%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
           F   P L    +  N L   S+P  I      L TL + ++ L  I         +L  L
Sbjct: 113 FQNVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 170

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
            LS N +  ++      +  L   N+S N L      TL     ++ L+ S NS+   + 
Sbjct: 171 QLSSNRL-THVDL--SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVR 221

Query: 223 PTLGHLTQLTTLAMSN 238
             +    +LT L + +
Sbjct: 222 GPV--NVELTILKLQH 235

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 71.9 bits (176), Expect = 1e-14
 Identities = 36/155 (23%), Positives = 65/155 (41%), Gaps = 19/155 (12%)

Query: 99  LGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSM---------------LQTLELPSS 143
           L   + S  P+L    +  N L + +IP  +  L                 L  L+L  +
Sbjct: 183 LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN 242

Query: 144 RLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCH 203
            LT    + +     LV +DLS N +   +     ++ +L+ L +S+N LV  + L    
Sbjct: 243 NLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQP 299

Query: 204 LSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
           +  LK+L+LS N L+ ++        +L  L + +
Sbjct: 300 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 68.0 bits (166), Expect = 2e-13
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 4/109 (3%)

Query: 132 LSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPP-TLGRLSKLKILNLSS 190
           L+  + +   +S +  +  + +   R +  L+L+D  I   I          ++ L +  
Sbjct: 50  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGF 108

Query: 191 NFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPP-TLGHLTQLTTLAMSN 238
           N +    P    ++  L +L L  N L  ++P     +  +LTTL+MSN
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSN 156

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 60.3 bits (146), Expect = 9e-11
 Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 8/118 (6%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
              +P L    +  N L    I       +  L+ L + ++RL   +      +  L  L
Sbjct: 250 LLNYPGLVEVDLSYNEL--EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVL 306

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGN 220
           DLS N++  ++     +  +L+ L L  N +V  + L+      LK L LS N    N
Sbjct: 307 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLS--THHTLKNLTLSHNDWDCN 360

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.9 bits (145), Expect = 1e-10
 Identities = 17/117 (14%), Positives = 42/117 (35%), Gaps = 4/117 (3%)

Query: 124 SIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPP-TLGRLSK 182
            I S +    +   + +           E   L N   +   ++ +   +P   L    +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-RKLPAALLDSFRQ 76

Query: 183 LKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPP-TLGHLTQLTTLAMSN 238
           +++LNL+   +         +   ++ L +  N++   +PP    ++  LT L +  
Sbjct: 77  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLER 132

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.5 bits (136), Expect = 2e-09
 Identities = 34/152 (22%), Positives = 51/152 (33%), Gaps = 24/152 (15%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
           F   P L    +  N L   S+P  I      L TL + ++ L  I         +L  L
Sbjct: 119 FQNVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFL---VGNIPLTLCHLS-------------K 206
            LS N +  ++      +  L   N+S N L      I +     S             +
Sbjct: 177 QLSSNRL-THVDL--SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 233

Query: 207 LKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
           L IL L  N+L       L +   L  + +S 
Sbjct: 234 LTILKLQHNNLTD--TAWLLNYPGLVEVDLSY 263

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 71.7 bits (176), Expect = 1e-14
 Identities = 28/144 (19%), Positives = 57/144 (39%), Gaps = 5/144 (3%)

Query: 98  ELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRL 156
            +G  +     NL+   + S+ +   +I  +   +L  L+ L+L  + L+ +  S  G L
Sbjct: 40  YIGHGDLRACANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL 97

Query: 157 RNLVRLDLSDNYIGG-YIPPTLGRLSKLKILNLSSNFLVGNIP-LTLCHLSKLKILNLSS 214
            +L  L+L  N      +      L+ L+ L + +      I  +    L+ L  L + +
Sbjct: 98  SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157

Query: 215 NSLVGNIPPTLGHLTQLTTLAMSN 238
            SL      +L  +  +  L +  
Sbjct: 158 LSLRNYQSQSLKSIRDIHHLTLHL 181

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.1 bits (172), Expect = 5e-14
 Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 3/116 (2%)

Query: 124 SIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKL 183
           SIPS +   + +++L+L  +++T I   ++    NL  L L  + I          L  L
Sbjct: 19  SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76

Query: 184 KILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVG-NIPPTLGHLTQLTTLAMSN 238
           + L+LS N L          LS LK LNL  N      +     +LT L TL + N
Sbjct: 77  EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 68.2 bits (167), Expect = 2e-13
 Identities = 29/145 (20%), Positives = 60/145 (41%), Gaps = 10/145 (6%)

Query: 103 NFSCFPNLKSFKIHSNYL----LSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN 158
             S    +++  I   ++    L   + +  + L  ++ + + +S++  +  S    L++
Sbjct: 276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS 335

Query: 159 LVRLDLSDNYIGGYIPPT---LGRLSKLKILNLSSNFL--VGNIPLTLCHLSKLKILNLS 213
           L  LDLS+N +           G    L+ L LS N L  +      L  L  L  L++S
Sbjct: 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS 395

Query: 214 SNSLVGNIPPTLGHLTQLTTLAMSN 238
            N+    +P +     ++  L +S+
Sbjct: 396 RNTF-HPMPDSCQWPEKMRFLNLSS 419

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.4 bits (157), Expect = 3e-12
 Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 1/132 (0%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEM-GRLRNLVRL 162
           F    +LK   +  N   +  + S    L+ LQTL + +      I       L +L  L
Sbjct: 94  FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
           ++    +  Y   +L  +  +  L L  +     + +    LS ++ L L   +L     
Sbjct: 154 EIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF 213

Query: 223 PTLGHLTQLTTL 234
             L      + +
Sbjct: 214 SPLPVDEVSSPM 225

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.4 bits (157), Expect = 4e-12
 Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 6/146 (4%)

Query: 98  ELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLR 157
           EL    F           + +     S   ++  ++ ++ L +P   L   + +    L 
Sbjct: 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT-IRRLHIPQFYLFYDLSTVYSLLE 310

Query: 158 NLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLT---LCHLSKLKILNLSS 214
            + R+ + ++ +          L  L+ L+LS N +V               L+ L LS 
Sbjct: 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370

Query: 215 NSL--VGNIPPTLGHLTQLTTLAMSN 238
           N L  +      L  L  LT+L +S 
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISR 396

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.1 bits (146), Expect = 9e-11
 Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 11/135 (8%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLD 163
                NL S  I  N      +P        ++ L L S+ +  +   +    + L  LD
Sbjct: 383 LLTLKNLTSLDISRNTF--HPMPDSCQWPEKMRFLNLSSTGIRVV---KTCIPQTLEVLD 437

Query: 164 LSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPP 223
           +S+N +          L +L+ L +S N L   +P        L ++ +S N L      
Sbjct: 438 VSNNNLD-SFSL---FLPRLQELYISRNKLK-TLPDAS-LFPVLLVMKISRNQLKSVPDG 491

Query: 224 TLGHLTQLTTLAMSN 238
               LT L  + +  
Sbjct: 492 IFDRLTSLQKIWLHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.3 bits (131), Expect = 8e-09
 Identities = 21/135 (15%), Positives = 42/135 (31%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLD 163
           F    NL++ +I +    S     +   L+ L  LE+ +  L       +  +R++  L 
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178

Query: 164 LSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPP 223
           L  +     +      LS ++ L L    L       L        +   +         
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238

Query: 224 TLGHLTQLTTLAMSN 238
           +   L +L    +  
Sbjct: 239 SFNELLKLLRYILEL 253

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.6 bits (124), Expect = 7e-08
 Identities = 19/116 (16%), Positives = 41/116 (35%), Gaps = 10/116 (8%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
           +      ++   + S  +    + + I     L+ L++ ++ L          L  L  L
Sbjct: 405 SCQWPEKMRFLNLSSTGI--RVVKTCI--PQTLEVLDVSNNNLDSFSL----FLPRLQEL 456

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV 218
            +S N +   +P        L ++ +S N L          L+ L+ + L +N   
Sbjct: 457 YISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 21/157 (13%), Positives = 52/157 (33%), Gaps = 11/157 (7%)

Query: 92  NDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPS 151
           N     E+ R +F+   +L   +I +  L +      + ++  +  L L  S    ++  
Sbjct: 132 NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ-SQSLKSIRDIHHLTLHLSESAFLLEI 190

Query: 152 EMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVG----------NIPLTL 201
               L ++  L+L D  +  +    L        +   +                +   +
Sbjct: 191 FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250

Query: 202 CHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
             LS+++  + + N L    P     +++L  +    
Sbjct: 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 71.4 bits (175), Expect = 2e-14
 Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 6/118 (5%)

Query: 124 SIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPP-TLGRLSK 182
            +P     L+  + L L  + +  +  S    L  L  L+L   Y    I       L  
Sbjct: 18  QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPN 74

Query: 183 LKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPP--TLGHLTQLTTLAMSN 238
           L+IL+L S+ +    P     L  L  L L    L   +       +L  LT L +S 
Sbjct: 75  LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 70.2 bits (172), Expect = 4e-14
 Identities = 30/138 (21%), Positives = 56/138 (40%), Gaps = 8/138 (5%)

Query: 102 FNFSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRLRNLV 160
           F      +++   +   ++ S  + S +   L  L+ L L  +++  I       L NL 
Sbjct: 260 FAGLARSSVRHLDLSHGFVFS--LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317

Query: 161 RLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGN 220
            L+LS N +G         L K+  ++L  N +      T   L KL+ L+L  N+L   
Sbjct: 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-- 375

Query: 221 IPPTLGHLTQLTTLAMSN 238
              T+  +  +  + +S 
Sbjct: 376 ---TIHFIPSIPDIFLSG 390

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 69.8 bits (171), Expect = 6e-14
 Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 3/138 (2%)

Query: 98  ELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLR 157
            +   +F     L+  ++ S Y            L  L+ L+L SS++  + P     L 
Sbjct: 38  TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97

Query: 158 NLVRLDLSDNYIGGYIPP--TLGRLSKLKILNLSSNFLVG-NIPLTLCHLSKLKILNLSS 214
           +L  L L    +   +        L  L  L+LS N +    +  +   L+ LK ++ SS
Sbjct: 98  HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157

Query: 215 NSLVGNIPPTLGHLTQLT 232
           N +       L  L   T
Sbjct: 158 NQIFLVCEHELEPLQGKT 175

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 67.1 bits (164), Expect = 4e-13
 Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 5/144 (3%)

Query: 98  ELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITA---LSMLQTLELPSSRLTGIIPSEMG 154
           +   F+     ++       + +          A    S ++ L+L    +  +      
Sbjct: 230 KSQAFSLILAHHIMGAGFGFHNIKD--PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287

Query: 155 RLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSS 214
            L++L  L+L+ N I          L  L++LNLS N L          L K+  ++L  
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347

Query: 215 NSLVGNIPPTLGHLTQLTTLAMSN 238
           N +      T   L +L TL + +
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRD 371

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 8/136 (5%)

Query: 109 NLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEM-GRLRNLVRLDLSDN 167
                 +  N L +  I   +  +  LQ L L  +R +     +      +L +L L +N
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461

Query: 168 YIGGYIPP-----TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
            +               LS L++L L+ N+L    P    HL+ L+ L+L+SN L   + 
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLS 520

Query: 223 PTLGHLTQLTTLAMSN 238
                   L  L +S 
Sbjct: 521 HND-LPANLEILDISR 535

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 7/133 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGR-----LRN 158
               P+L+   ++ N   S S     +    L+ L L  + L     +E+       L +
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481

Query: 159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV 218
           L  L L+ NY+    P     L+ L+ L+L+SN L       L   + L+IL++S N L+
Sbjct: 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLL 539

Query: 219 GNIPPTLGHLTQL 231
              P     L+ L
Sbjct: 540 APNPDVFVSLSVL 552

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 8/115 (6%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
           F    +LK   +  N +    I  E    L  LQ L L  + L  +  S    L  +  +
Sbjct: 286 FETLKDLKVLNLAYNKI--NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSL 217
           DL  N+I      T   L KL+ L+L  N L      T+  +  +  + LS N L
Sbjct: 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKL 393

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.1 bits (125), Expect = 5e-08
 Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 9/139 (6%)

Query: 88  LWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSI----PSEITALSMLQTLELPSS 143
           L    +      G    S  P+L+   +  N L               LS LQ L L  +
Sbjct: 431 LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490

Query: 144 RLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCH 203
            L  + P     L  L  L L+ N +   +       + L+IL++S N L+         
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHND-LPANLEILDISRNQLLA---PNPDV 545

Query: 204 LSKLKILNLSSNSLVGNIP 222
              L +L+++ N  +    
Sbjct: 546 FVSLSVLDITHNKFICECE 564

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 22/171 (12%)

Query: 90  YENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGII 149
           Y        L    F     L    +  N + S  +      L+ L++++  S+++  + 
Sbjct: 105 YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164

Query: 150 PSEMGRLR--NLVRLDLSDNYIGGYIPPTLGRLSK------LKILNLSSNFLVGNIP--- 198
             E+  L+   L    L+ N +   +    G+         L+IL++S N    +I    
Sbjct: 165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF 224

Query: 199 ---------LTLCHLSKLKILNLSSNSLVGNIPPTLGHL--TQLTTLAMSN 238
                     +L     +       +++      T   L  + +  L +S+
Sbjct: 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH 275

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 70.0 bits (172), Expect = 3e-14
 Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 6/148 (4%)

Query: 92  NDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPS 151
           +DN   ++ +  FS   N+   ++  N L +            L  L +  ++LTG IP 
Sbjct: 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPK 189

Query: 152 EMGRLRNLVRLDLSDNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKIL 210
           ++     L  L L  N I   I    L R SKL  L L  N +      +L  L  L+ L
Sbjct: 190 DL--PETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLREL 246

Query: 211 NLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
           +L +N L   +P  L  L  L  + +  
Sbjct: 247 HLDNNKLS-RVPAGLPDLKLLQVVYLHT 273

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.4 bits (147), Expect = 5e-11
 Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 10/137 (7%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLD 163
           FS    L+   I  N+L    IP      S L  L +  +R+  +       LRN+  ++
Sbjct: 98  FSPLRKLQKLYISKNHL--VEIPPN--LPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIE 153

Query: 164 LSDNYIG-GYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
           +  N +      P      KL  L +S   L   IP  L     L  L+L  N +   I 
Sbjct: 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIE 209

Query: 223 P-TLGHLTQLTTLAMSN 238
              L   ++L  L + +
Sbjct: 210 LEDLLRYSKLYRLGLGH 226

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.0 bits (146), Expect = 8e-11
 Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 12/141 (8%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLS 165
              L    +  N +   +I  E     S L  L L  +++  I    +  L  L  L L 
Sbjct: 192 PETLNELHLDHNKI--QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249

Query: 166 DNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHL------SKLKILNLSSNSL-V 218
           +N +   +P  L  L  L+++ L +N +        C +      +    ++L +N +  
Sbjct: 250 NNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308

Query: 219 GNIPP-TLGHLTQLTTLAMSN 238
             + P T   +T    +   N
Sbjct: 309 WEVQPATFRCVTDRLAIQFGN 329

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 15/138 (10%)

Query: 109 NLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNY 168
            L   +I    L    IP +      L  L L  +++  I   ++ R   L RL L  N 
Sbjct: 173 KLNYLRISEAKL--TGIPKD--LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228

Query: 169 IGGYIPP-TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPT--- 224
           I   I   +L  L  L+ L+L +N L   +P  L  L  L+++ L +N++   +      
Sbjct: 229 I-RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFC 285

Query: 225 ----LGHLTQLTTLAMSN 238
                        +++ N
Sbjct: 286 PVGFGVKRAYYNGISLFN 303

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 18/122 (14%), Positives = 45/122 (36%), Gaps = 14/122 (11%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
              +  L    +  N +    I +   + L  L+ L L +++L+  +P+ +  L+ L  +
Sbjct: 213 LLRYSKLYRLGLGHNQI--RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVV 269

Query: 163 DLSDNYIGGYIPPT-------LGRLSKLKILNLSSNFL-VGNI-PLTLCHLSKLKILNLS 213
            L  N I   +            + +    ++L +N +    + P T   ++    +   
Sbjct: 270 YLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328

Query: 214 SN 215
           + 
Sbjct: 329 NY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 6/104 (5%)

Query: 135 LQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLV 194
           L+ ++     L  + P E+    +   LDL +N I          L  L  L L +N + 
Sbjct: 35  LRVVQCSDLGLKAV-PKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 195 GNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
                    L KL+ L +S N LV  IPP L   + L  L + +
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHD 132

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.4 bits (170), Expect = 7e-14
 Identities = 35/137 (25%), Positives = 51/137 (37%), Gaps = 8/137 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLD 163
            SC             L    +P  I+     + L L  +++  I  +    LR+L  L 
Sbjct: 39  CSCSNQFSKVICVRKNLRE--VPDGISTN--TRLLNLHENQIQIIKVNSFKHLRHLEILQ 94

Query: 164 LSDNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
           LS N+I   I       L+ L  L L  N L         +LSKLK L L +N +  +IP
Sbjct: 95  LSRNHI-RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIP 152

Query: 223 P-TLGHLTQLTTLAMSN 238
                 +  L  L +  
Sbjct: 153 SYAFNRIPSLRRLDLGE 169

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.5 bits (160), Expect = 1e-12
 Identities = 45/139 (32%), Positives = 63/139 (45%), Gaps = 10/139 (7%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
           F+   NL + ++  N L   +IP+     LS L+ L L ++ +  I      R+ +L RL
Sbjct: 108 FNGLANLNTLELFDNRL--TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL 165

Query: 163 DLSD-NYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGN 220
           DL +   +  YI       LS L+ LNL+   L   IP  L  L KL  L+LS N L   
Sbjct: 166 DLGELKRL-SYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-A 221

Query: 221 IPP-TLGHLTQLTTLAMSN 238
           I P +   L  L  L M  
Sbjct: 222 IRPGSFQGLMHLQKLWMIQ 240

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 8/138 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
           F+  P+L+   +     LS  I       LS L+ L L    L  I    +  L  L  L
Sbjct: 156 FNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDEL 212

Query: 163 DLSDNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNI 221
           DLS N++   I P +   L  L+ L +  + +         +L  L  +NL+ N+L   +
Sbjct: 213 DLSGNHL-SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LL 270

Query: 222 PP-TLGHLTQLTTLAMSN 238
           P      L  L  + + +
Sbjct: 271 PHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.1 bits (138), Expect = 9e-10
 Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 5/116 (4%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLD 163
           F    NL+   +    L    IP+ +T L  L  L+L  + L+ I P     L +L +L 
Sbjct: 181 FEGLSNLRYLNLAMCNLRE--IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237

Query: 164 LSDNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV 218
           +  + I   I       L  L  +NL+ N L          L  L+ ++L  N   
Sbjct: 238 MIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRLRNLVR 161
           N +    L    +  N+L   +I       L  LQ L +  S++  I  +    L++LV 
Sbjct: 202 NLTPLIKLDELDLSGNHL--SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259

Query: 162 LDLSDNYIGGYIPPTLGRLSKLKILNLSSN 191
           ++L+ N +          L  L+ ++L  N
Sbjct: 260 INLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.5 bits (165), Expect = 3e-13
 Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 10/139 (7%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
           F+   +L + ++  N+L    IPS     LS L+ L L ++ +  I      R+ +L+RL
Sbjct: 119 FNGLASLNTLELFDNWL--TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176

Query: 163 DLSD-NYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGN 220
           DL +   +  YI       L  LK LNL    +  ++P  L  L  L+ L +S N     
Sbjct: 177 DLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFP-E 232

Query: 221 IPP-TLGHLTQLTTLAMSN 238
           I P +   L+ L  L + N
Sbjct: 233 IRPGSFHGLSSLKKLWVMN 251

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 61.3 bits (149), Expect = 4e-11
 Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 8/136 (5%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLS 165
             N +   +  N +    I ++    L  L+ L+L  + +  I       L +L  L+L 
Sbjct: 74  PSNTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131

Query: 166 DNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPL-TLCHLSKLKILNLSSNSLVGNIPP 223
           DN++   IP      LSKL+ L L +N +  +IP      +  L  L+L     +  I  
Sbjct: 132 DNWL-TVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISE 189

Query: 224 -TLGHLTQLTTLAMSN 238
                L  L  L +  
Sbjct: 190 GAFEGLFNLKYLNLGM 205

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 58.2 bits (141), Expect = 4e-10
 Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 5/116 (4%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLD 163
           F    NLK   +    +    +P+ +T L  L+ LE+  +    I P     L +L +L 
Sbjct: 192 FEGLFNLKYLNLGMCNIKD--MPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248

Query: 164 LSDNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV 218
           + ++ +   I       L+ L  LNL+ N L          L  L  L+L  N   
Sbjct: 249 VMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 11/110 (10%)

Query: 133 SMLQTLELPSSRLTGI---IPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLS 189
           +    +      L+ +   IPS      N   L+L +N I      T   L  L++L L 
Sbjct: 54  NQFSKVVCTRRGLSEVPQGIPS------NTRYLNLMENNIQMIQADTFRHLHHLEVLQLG 107

Query: 190 SNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPP-TLGHLTQLTTLAMSN 238
            N +          L+ L  L L  N L   IP     +L++L  L + N
Sbjct: 108 RNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRN 156

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.4 bits (160), Expect = 8e-13
 Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 7/118 (5%)

Query: 124 SIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPP-TLGRLSK 182
           ++P  I   +  Q + L  +R++ +  +     RNL  L L  N +   I       L+ 
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLAL 81

Query: 183 LKILNLSSNFLVGNIPL-TLCHLSKLKILNLSSNSLVGNIPP-TLGHLTQLTTLAMSN 238
           L+ L+LS N  + ++   T   L +L  L+L    L   + P     L  L  L + +
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQD 138

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.9 bits (156), Expect = 3e-12
 Identities = 34/138 (24%), Positives = 50/138 (36%), Gaps = 7/138 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
           F     L +  +    L    +   +   L+ LQ L L  + L  +       L NL  L
Sbjct: 101 FHGLGRLHTLHLDRCGL--QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158

Query: 163 DLSDNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNI 221
            L  N I   +P      L  L  L L  N +    P     L +L  L L +N+L   +
Sbjct: 159 FLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-AL 216

Query: 222 PP-TLGHLTQLTTLAMSN 238
           P   L  L  L  L +++
Sbjct: 217 PTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 5/117 (4%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
           F     L+   +  N L   ++P +    L  L  L L  +R++ +       L +L RL
Sbjct: 125 FRGLAALQYLYLQDNAL--QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182

Query: 163 DLSDNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV 218
            L  N +  ++ P     L +L  L L +N L       L  L  L+ L L+ N  V
Sbjct: 183 LLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.9 bits (160), Expect = 1e-12
 Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 8/133 (6%)

Query: 108 PNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDN 167
           P   ++                   + ++ L L    LT +    + +L  +  LDLS N
Sbjct: 416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHN 473

Query: 168 YIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP--PTL 225
            +   +PP L  L  L++L  S N L  N+   + +L +L+ L L +N L         L
Sbjct: 474 RLRA-LPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRL-QQSAAIQPL 529

Query: 226 GHLTQLTTLAMSN 238
               +L  L +  
Sbjct: 530 VSCPRLVLLNLQG 542

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.4 bits (143), Expect = 2e-10
 Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 15/135 (11%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSD 166
           + +++   +    L   ++   +  L ++  L+L  +RL  + P  +  LR L  L  SD
Sbjct: 440 YADVRVLHLAHKDL---TVLCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASD 495

Query: 167 NYIGGYIPPTLGRLSKLKILNLSSNFLVGNIP--LTLCHLSKLKILNLSSNSLV------ 218
           N +   +   +  L +L+ L L +N L         L    +L +LNL  NSL       
Sbjct: 496 NALE-NVDG-VANLPRLQELLLCNNRL-QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552

Query: 219 GNIPPTLGHLTQLTT 233
             +   L  ++ + T
Sbjct: 553 ERLAEMLPSVSSILT 567

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.8 bits (131), Expect = 6e-09
 Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 8/112 (7%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
           +      +    +  N L   ++P  + AL  L+ L+   + L  +    +  L  L  L
Sbjct: 458 HLEQLLLVTHLDLSHNRL--RALPPALAALRCLEVLQASDNALENV--DGVANLPRLQEL 513

Query: 163 DLSDNYIGGY-IPPTLGRLSKLKILNLSSNFLVGNIPLT---LCHLSKLKIL 210
            L +N +        L    +L +LNL  N L     +       L  +  +
Sbjct: 514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 64.9 bits (158), Expect = 3e-12
 Identities = 30/147 (20%), Positives = 52/147 (35%), Gaps = 32/147 (21%)

Query: 105 SCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDL 164
           +  P L++ ++  N L   S+P     L  L     P + L  +          L +L +
Sbjct: 78  ALPPELRTLEVSGNQL--TSLPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWI 128

Query: 165 SDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKI--------------- 209
             N +   +P        L+ L++S N L  ++P     L KL                 
Sbjct: 129 FGNQLT-SLPVLPP---GLQELSVSDNQL-ASLPALPSELCKLWAYNNQLTSLPMLPSGL 183

Query: 210 --LNLSSNSLVGNIPPTLGHLTQLTTL 234
             L++S N L  ++P     L +L   
Sbjct: 184 QELSVSDNQLA-SLPTLPSELYKLWAY 209

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.0 bits (153), Expect = 1e-11
 Identities = 33/125 (26%), Positives = 48/125 (38%), Gaps = 18/125 (14%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSD 166
            P L+   +  N L   S+P+     S L  L   +++LT + P        L  L +SD
Sbjct: 140 PPGLQELSVSDNQL--ASLPALP---SELCKLWAYNNQLTSL-PMLPS---GLQELSVSD 190

Query: 167 NYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLG 226
           N +   +P     L KL   N     L           S LK L +S N L  ++P    
Sbjct: 191 NQLA-SLPTLPSELYKLWAYNNRLTSLPALP-------SGLKELIVSGNRL-TSLPVLPS 241

Query: 227 HLTQL 231
            L +L
Sbjct: 242 ELKEL 246

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 60.7 bits (147), Expect = 7e-11
 Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 14/132 (10%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSD 166
              L     ++N L   S+P+  + L   + L +  +RLT + P     L+ L    +S 
Sbjct: 200 PSELYKLWAYNNRL--TSLPALPSGL---KELIVSGNRLTSL-PVLPSELKEL---MVSG 250

Query: 167 NYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLG 226
           N +   +P        L  L++  N L   +P +L HLS    +NL  N L       L 
Sbjct: 251 NRLT-SLPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305

Query: 227 HLTQLTTLAMSN 238
            +T     +   
Sbjct: 306 EITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.4 bits (141), Expect = 4e-10
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 13/104 (12%)

Query: 135 LQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLV 194
              L +  S LT  +P  +    ++  L + DN +   +P       +L+ L +S N L 
Sbjct: 42  NAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPP---ELRTLEVSGNQLT 94

Query: 195 GNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLT----QLTTL 234
            ++P+    L +L I +     L   +P  L  L     QLT+L
Sbjct: 95  -SLPVLPPGLLELSIFSNPLTHLP-ALPSGLCKLWIFGNQLTSL 136

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.1 bits (130), Expect = 9e-09
 Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 155 RLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSS 214
                  L++ ++ +   +P  L   + +  L +  N L  ++P       +L+ L +S 
Sbjct: 38  LNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLP---ALPPELRTLEVSG 90

Query: 215 NSLVGNIPPTLGHLTQLTTLAMSN 238
           N L  ++P     L +L+  +   
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPL 113

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 64.6 bits (157), Expect = 3e-12
 Identities = 27/138 (19%), Positives = 46/138 (33%), Gaps = 15/138 (10%)

Query: 105 SCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDL 164
                L+     +N L    +P   T+L   + L + +++LT + P     L     LD+
Sbjct: 137 ELPALLEYINADNNQL--TMLPELPTSL---EVLSVRNNQLTFL-PELPESLE---ALDV 187

Query: 165 SDNYIGGYIPPTLGRLSKLK----ILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGN 220
           S N +   +P    R    +          N +  +IP  +  L     + L  N L   
Sbjct: 188 STNLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR 245

Query: 221 IPPTLGHLTQLTTLAMSN 238
           I  +L   T         
Sbjct: 246 IRESLSQQTAQPDYHGPR 263

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 55.4 bits (133), Expect = 4e-09
 Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 14/112 (12%)

Query: 124 SIPSEI-TALSMLQTLELPSS---RLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGR 179
              ++  +A    +   LP         ++      +     L L+   +   +P  L  
Sbjct: 24  GTYADYFSAWDKWEKQALPGENRNEAVSLLKE--CLINQFSELQLNRLNLSS-LPDNLP- 79

Query: 180 LSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQL 231
             ++ +L ++ N L+ ++P      + L+ L+   N L   +P     L  L
Sbjct: 80  -PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPELPASLKHL 125

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 52.7 bits (126), Expect = 3e-08
 Identities = 21/128 (16%), Positives = 46/128 (35%), Gaps = 12/128 (9%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLD 163
           FS +   +   +            +   ++    L+L    L+  +P  +     +  L+
Sbjct: 30  FSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLPDNLPP--QITVLE 86

Query: 164 LSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPP 223
           ++ N +   +P        L+ L+   N L   +P      + LK L++ +N L   +P 
Sbjct: 87  ITQNALI-SLPELPA---SLEYLDACDNRLS-TLPELP---ASLKHLDVDNNQLT-MLPE 137

Query: 224 TLGHLTQL 231
               L  +
Sbjct: 138 LPALLEYI 145

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.7 bits (100), Expect = 6e-05
 Identities = 16/130 (12%), Positives = 42/130 (32%), Gaps = 9/130 (6%)

Query: 105 SCFPNLKSFKIHSNYLLSGSIPSEITALSMLQT----LELPSSRLTGIIPSEMGRLRNLV 160
               +L++  + +N L   S+P+        +          +R+T I P  +  L    
Sbjct: 177 ELPESLEALDVSTNLL--ESLPAVPVRNHHSEETEIFFRCRENRITHI-PENILSLDPTC 233

Query: 161 RLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGN 220
            + L DN +   I  +L + +     +    +   ++     +     + +  +     N
Sbjct: 234 TIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF--SMSDGQQNTLHRPLADAVTAWFPEN 291

Query: 221 IPPTLGHLTQ 230
               +  +  
Sbjct: 292 KQSDVSQIWH 301

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 63.9 bits (156), Expect = 4e-12
 Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 11/141 (7%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLD 163
           F     L   +I    +   +IP        L  L L  +++T +  + +  L NL +L 
Sbjct: 167 FQGMKKLSYIRIADTNI--TTIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222

Query: 164 LSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSL------ 217
           LS N I      +L     L+ L+L++N LV  +P  L     ++++ L +N++      
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN 281

Query: 218 VGNIPPTLGHLTQLTTLAMSN 238
               P         + +++ +
Sbjct: 282 DFCPPGYNTKKASYSGVSLFS 302

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 63.5 bits (155), Expect = 5e-12
 Identities = 23/141 (16%), Positives = 52/141 (36%), Gaps = 12/141 (8%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLS 165
            P+L    +  N +    + +     L+ L  L L  + ++ +    +    +L  L L+
Sbjct: 191 PPSLTELHLDGNKI--TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248

Query: 166 DNYIGGYIPPTLGRLSKLKILNLSSNFL------VGNIPLTLCHLSKLKILNLSSNSL-V 218
           +N +   +P  L     ++++ L +N +          P      +    ++L SN +  
Sbjct: 249 NNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307

Query: 219 GNIPP-TLGHLTQLTTLAMSN 238
             I P T   +     + + N
Sbjct: 308 WEIQPSTFRCVYVRAAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 11/138 (7%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLD 163
           F+    L+   +  N L    +P +      LQ L +  + +T +  S    L  ++ ++
Sbjct: 96  FAPLVKLERLYLSKNQL--KELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 151

Query: 164 LSDNYIG-GYIPP-TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNI 221
           L  N +    I       + KL  + ++   +   IP  L     L  L+L  N +   +
Sbjct: 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKI-TKV 207

Query: 222 PP-TLGHLTQLTTLAMSN 238
              +L  L  L  L +S 
Sbjct: 208 DAASLKGLNNLAKLGLSF 225

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 59.6 bits (145), Expect = 9e-11
 Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 11/137 (8%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLD 163
           F C  +L+  +     L    +P ++        L+L ++++T I   +   L+NL  L 
Sbjct: 27  FRCQCHLRVVQCSDLGLEK--VPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLI 82

Query: 164 LSDNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
           L +N I   I P     L KL+ L LS N L   +P  +     L+ L +  N +   + 
Sbjct: 83  LINNKI-SKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEIT-KVR 137

Query: 223 P-TLGHLTQLTTLAMSN 238
                 L Q+  + +  
Sbjct: 138 KSVFNGLNQMIVVELGT 154

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 12/121 (9%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
                NL    +  N +   ++ +        L+ L L +++L   +P  +   + +  +
Sbjct: 212 LKGLNNLAKLGLSFNSI--SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268

Query: 163 DLSDNYI-----GGYIPP-TLGRLSKLKILNLSSNFL-VGNI-PLTLCHLSKLKILNLSS 214
            L +N I       + PP    + +    ++L SN +    I P T   +     + L +
Sbjct: 269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328

Query: 215 N 215
            
Sbjct: 329 Y 329

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.5 bits (155), Expect = 6e-12
 Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 17/134 (12%)

Query: 105 SCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDL 164
              P+L+S     N L    +P    +L  L         L+ + P        L  L +
Sbjct: 88  ELPPHLESLVASCNSL--TELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGV 138

Query: 165 SDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPT 224
           S+N +     P L   S LKI+++ +N L   +P        L+ +   +N L     P 
Sbjct: 139 SNNQLEKL--PELQNSSFLKIIDVDNNSLK-KLP---DLPPSLEFIAAGNNQL--EELPE 190

Query: 225 LGHLTQLTTLAMSN 238
           L +L  LT +   N
Sbjct: 191 LQNLPFLTAIYADN 204

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.5 bits (155), Expect = 7e-12
 Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 15/131 (11%)

Query: 108 PNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDN 167
           P L+   + +N L    +P E+   S L+ +++ ++ L  +         +L  +   +N
Sbjct: 131 PLLEYLGVSNNQL--EKLP-ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNN 183

Query: 168 YIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGH 227
            +     P L  L  L  +   +N L   +P        L+ +   +N L     P L +
Sbjct: 184 QLE--ELPELQNLPFLTAIYADNNSLK-KLP---DLPLSLESIVAGNNIL--EELPELQN 235

Query: 228 LTQLTTLAMSN 238
           L  LTT+   N
Sbjct: 236 LPFLTTIYADN 246

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 24/130 (18%), Positives = 41/130 (31%), Gaps = 14/130 (10%)

Query: 105 SCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDL 164
              P+L+     +N L       E+  L  L  +   ++ L  +         +L  +  
Sbjct: 170 DLPPSLEFIAAGNNQL---EELPELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVA 222

Query: 165 SDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPT 224
            +N +     P L  L  L  +   +N L   +P     L  L + +     L    P  
Sbjct: 223 GNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDL----PEL 275

Query: 225 LGHLTQLTTL 234
              LT L   
Sbjct: 276 PQSLTFLDVS 285

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 60.4 bits (147), Expect = 8e-11
 Identities = 28/158 (17%), Positives = 46/158 (29%), Gaps = 35/158 (22%)

Query: 109 NLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLR----------- 157
            L+    HS+ L    +P E   +          S      P   G  R           
Sbjct: 12  FLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 158 --NLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSN 215
                 L+L++  +   +P        L+ L  S N L   +P     L  L + N +  
Sbjct: 70  DRQAHELELNNLGL-SSLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 124

Query: 216 SLVGNIP---------------PTLGHLTQLTTLAMSN 238
           +L    P               P L + + L  + + N
Sbjct: 125 ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDN 162

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 11/123 (8%)

Query: 125 IPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLK 184
           I     + + LQ     SS LT  +P E   +++      + +      PP  G   ++ 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 185 ILNLSSNFLVGNIPLTLCH---------LSKLKILNLSSNSLVGNIPPTLGHLTQLTTLA 235
           +  L          L L +            L+ L  S NSL   +P     L  L    
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDN 120

Query: 236 MSN 238
            + 
Sbjct: 121 NNL 123

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.2 bits (131), Expect = 7e-09
 Identities = 23/136 (16%), Positives = 49/136 (36%), Gaps = 17/136 (12%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
                P L +    +N L    +P    +L   +++   ++ L      E+  L  L  +
Sbjct: 190 ELQNLPFLTAIYADNNSLKK--LPDLPLSL---ESIVAGNNILE--ELPELQNLPFLTTI 242

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
              +N +   +P     L  L + +        ++P     L+ L +     + L   +P
Sbjct: 243 YADNNLLK-TLPDLPPSLEALNVRDNYLT----DLPELPQSLTFLDVSENIFSGLS-ELP 296

Query: 223 PTLGHLT----QLTTL 234
           P L +L     ++ +L
Sbjct: 297 PNLYYLNASSNEIRSL 312

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.2 bits (131), Expect = 8e-09
 Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 22/141 (15%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLD 163
                +L+S    +N L       E+  L  L T+   ++ L   +P       +L  L+
Sbjct: 211 PDLPLSLESIVAGNNIL---EELPELQNLPFLTTIYADNNLLK-TLPDLPP---SLEALN 263

Query: 164 LSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIP----LTLCH---------LSKLKIL 210
           + DNY+   +P     L+ L +     + L    P    L                L+ L
Sbjct: 264 VRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEEL 322

Query: 211 NLSSNSLVGNIPPTLGHLTQL 231
           N+S+N L+  +P     L +L
Sbjct: 323 NVSNNKLI-ELPALPPRLERL 342

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 14/111 (12%)

Query: 105 SCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDL 164
               NLK   +  N L     P    ++  L+     +S L  +        +NL +L +
Sbjct: 354 ELPQNLKQLHVEYNPLRE--FPDIPESVEDLRM----NSHLAEVPEL----PQNLKQLHV 403

Query: 165 SDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSN 215
             N +    P        ++ L ++S  +V           KL+      +
Sbjct: 404 ETNPLR-EFPDIPE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 23/147 (15%), Positives = 48/147 (32%), Gaps = 30/147 (20%)

Query: 108 PNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDN 167
           P+L+   + +N L+   +P+    L   + L    + L  +        +NL +L +  N
Sbjct: 317 PSLEELNVSNNKLIE--LPALPPRL---ERLIASFNHLAEVPEL----PQNLKQLHVEYN 367

Query: 168 YIGGYIPPTLGRL----------------SKLKILNLSSNFLVGNIPLTLCHLSKLKILN 211
            +    P     +                  LK L++ +N L    P        ++ L 
Sbjct: 368 PLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIP---ESVEDLR 422

Query: 212 LSSNSLVGNIPPTLGHLTQLTTLAMSN 238
           ++S  +V           +L      +
Sbjct: 423 MNSERVVDPYEFAHETTDKLEDDVFEH 449

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.0 bits (153), Expect = 9e-12
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 6/116 (5%)

Query: 124 SIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKL 183
            +P +++       L +  + ++ +  S++  L  L  L +S N I            +L
Sbjct: 14  HVPKDLSQK--TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL 71

Query: 184 KILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSL-VGNIPPTLGHLTQLTTLAMSN 238
           + L+LS N LV    ++      LK L+LS N+     I    G+++QL  L +S 
Sbjct: 72  EYLDLSHNKLVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLST 124

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 62.6 bits (152), Expect = 2e-11
 Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 7/138 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGI--IPSEMGRLRNLVR 161
            S           +N LL+ ++      L+ L+TL L  ++L  +  I     ++++L +
Sbjct: 320 PSKISPFLHLDFSNN-LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378

Query: 162 LDLSDNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGN 220
           LD+S N +              L  LN+SSN L   I   L    ++K+L+L SN +  +
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-S 435

Query: 221 IPPTLGHLTQLTTLAMSN 238
           IP  +  L  L  L +++
Sbjct: 436 IPKQVVKLEALQELNVAS 453

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.1 bits (143), Expect = 2e-10
 Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 8/139 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLD 163
           +  F N+       +      +    + +S    L+  ++ LT  +    G L  L  L 
Sbjct: 296 YEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354

Query: 164 LSDNYIGGYIPPTLG---RLSKLKILNLSSNFLVGNIPLTLC-HLSKLKILNLSSNSLVG 219
           L  N +   +        ++  L+ L++S N +  +     C     L  LN+SSN L  
Sbjct: 355 LQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413

Query: 220 NIPPTLGHLTQLTTLAMSN 238
            I   L    ++  L + +
Sbjct: 414 TIFRCL--PPRIKVLDLHS 430

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.9 bits (132), Expect = 5e-09
 Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 7/133 (5%)

Query: 108 PNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDN 167
                  I  NY+ S    S+I +LS L+ L +  +R+  +  S     + L  LDLS N
Sbjct: 21  QKTTILNISQNYI-SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79

Query: 168 YIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLT--LCHLSKLKILNLSSNSLVGNIPPTL 225
            +   I         LK L+LS N     +P+     ++S+LK L LS+  L  +    +
Sbjct: 80  KLVK-IS--CHPTVNLKHLDLSFNAF-DALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 226 GHLTQLTTLAMSN 238
            HL     L +  
Sbjct: 136 AHLNISKVLLVLG 148

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.8 bits (124), Expect = 7e-08
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 8/144 (5%)

Query: 102 FNFSCFPNLKSFKIHSNYLL----SGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLR 157
                   +  F I +  L             T+L  L   ++ S               
Sbjct: 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS 300

Query: 158 NLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSL 217
           N+   + + +           ++S    L+ S+N L   +     HL++L+ L L  N L
Sbjct: 301 NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360

Query: 218 VGNIPPTLG---HLTQLTTLAMSN 238
              +         +  L  L +S 
Sbjct: 361 K-ELSKIAEMTTQMKSLQQLDISQ 383

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.4 bits (123), Expect = 7e-08
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 6/102 (5%)

Query: 137 TLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGN 196
            ++   + L  + P      +    L++S NYI       +  LSKL+IL +S N +   
Sbjct: 4   LVDRSKNGLIHV-PK--DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL 60

Query: 197 IPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
                    +L+ L+LS N L   I         L  L +S 
Sbjct: 61  DISVFKFNQELEYLDLSHNKL-VKIS--CHPTVNLKHLDLSF 99

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 3/114 (2%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLD 163
            +   +L+   I  N +       + +    L +L + S+ LT  I   +     +  LD
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLD 427

Query: 164 LSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSL 217
           L  N I   IP  + +L  L+ LN++SN L          L+ L+ + L +N  
Sbjct: 428 LHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 33/142 (23%), Positives = 53/142 (37%), Gaps = 7/142 (4%)

Query: 98  ELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRL 156
           EL   +      L+   I  N +    +   +      L+ L+L  ++L  I        
Sbjct: 35  ELWTSDILSLSKLRILIISHNRI--QYLDISVFKFNQELEYLDLSHNKLVKI-SC--HPT 89

Query: 157 RNLVRLDLSDNYIGGY-IPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSN 215
            NL  LDLS N      I    G +S+LK L LS+  L  +  L + HL+  K+L +   
Sbjct: 90  VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGE 149

Query: 216 SLVGNIPPTLGHLTQLTTLAMS 237
           +      P         +L + 
Sbjct: 150 TYGEKEDPEGLQDFNTESLHIV 171

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.0 bits (109), Expect = 4e-06
 Identities = 25/165 (15%), Positives = 53/165 (32%), Gaps = 7/165 (4%)

Query: 81  SVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPS--EITALSMLQTL 138
            +  +  +  +N               P L +  +++      S     ++   + +   
Sbjct: 193 ELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252

Query: 139 ELPSSRLTGIIPSEMGR-----LRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFL 193
            + + +L G +           L+ L    +  +  G          S + I N + +  
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312

Query: 194 VGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
                L    +S    L+ S+N L   +    GHLT+L TL +  
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 22/129 (17%), Positives = 40/129 (31%), Gaps = 2/129 (1%)

Query: 99  LGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN 158
           L + +     NLK   +  N   +  I  E   +S L+ L L ++ L       +  L  
Sbjct: 81  LVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNI 140

Query: 159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV 218
              L +     G    P    L      +L   F        +  +S   + NL  +++ 
Sbjct: 141 SKVLLVLGETYGEKEDP--EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198

Query: 219 GNIPPTLGH 227
             +      
Sbjct: 199 CVLEDNKCS 207

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 62.8 bits (152), Expect = 1e-11
 Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 11/136 (8%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
             +   ++     +++ +   S+   I  L  +  L L  ++LT I    +  L+NL  L
Sbjct: 38  TQNELNSIDQIIANNSDI--KSV-QGIQYLPNVTKLFLNGNKLTDI--KPLTNLKNLGWL 92

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
            L +N I   +   L  L KLK L+L  N +  +I   L HL +L+ L L +N +  +I 
Sbjct: 93  FLDENKIKD-LSS-LKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKIT-DIT 147

Query: 223 PTLGHLTQLTTLAMSN 238
             L  LT+L TL++ +
Sbjct: 148 V-LSRLTKLDTLSLED 162

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 58.2 bits (140), Expect = 5e-10
 Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 9/132 (6%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
           +      LKS  +  N +   S  + +  L  L++L L ++++T I    + RL  L  L
Sbjct: 104 SLKDLKKLKSLSLEHNGI---SDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTL 158

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
            L DN I   I P L  L+KL+ L LS N +  ++   L  L  L +L L S   +    
Sbjct: 159 SLEDNQIS-DIVP-LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECLNKPI 214

Query: 223 PTLGHLTQLTTL 234
               +L    T+
Sbjct: 215 NHQSNLVVPNTV 226

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.3 bits (130), Expect = 9e-09
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 8/104 (7%)

Query: 135 LQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLV 194
                L    +T  +      L ++ ++  +++ I   +   +  L  +  L L+ N L 
Sbjct: 23  TIKDNLKKKSVTDAVTQNE--LNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLT 78

Query: 195 GNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
            +I   L +L  L  L L  N +  ++   L  L +L +L++ +
Sbjct: 79  -DIK-PLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEH 118

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.8 bits (126), Expect = 3e-08
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 7/115 (6%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
                P L+S  + +N +   +  + ++ L+ L TL L  ++++ I    +  L  L  L
Sbjct: 126 GLVHLPQLESLYLGNNKI---TDITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNL 180

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSL 217
            LS N+I       L  L  L +L L S   +        +L     +  +  SL
Sbjct: 181 YLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.5 bits (152), Expect = 1e-11
 Identities = 37/160 (23%), Positives = 68/160 (42%), Gaps = 13/160 (8%)

Query: 90  YENDNMKGELGRFNFSCFPNLKSFKIHSNYL----LSG----SIPSEI-TALSMLQTLEL 140
             + NM    G  NF    N     + ++ +    LS     ++   + +  + L+ L L
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL 306

Query: 141 PSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPL- 199
             + +  I  +    L +L++L+LS N++G         L KL++L+LS N +   +   
Sbjct: 307 AQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI-RALGDQ 365

Query: 200 TLCHLSKLKILNLSSNSLVGNIPP-TLGHLTQLTTLAMSN 238
           +   L  LK L L +N L  ++P      LT L  + +  
Sbjct: 366 SFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHT 404

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.5 bits (152), Expect = 1e-11
 Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 11/119 (9%)

Query: 124 SIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPP-TLGRLSK 182
            +P+ +        ++L  + +  +  +   RL++L  L +     G  I   T   LS 
Sbjct: 27  ELPAHVN------YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80

Query: 183 LKILNLSSNFLVGNIPL-TLCHLSKLKILNLSSNSLVGNIPP--TLGHLTQLTTLAMSN 238
           L IL L  N  +  +       L+ L++L L+  +L G +        LT L  L + +
Sbjct: 81  LIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 98  ELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLR 157
           EL   +FS   +L+  K+           +    LS L  L+L  ++   +       L 
Sbjct: 44  ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103

Query: 158 NLVRLDLSDNYI-GGYIPP-TLGRLSKLKILNLSSNFLVGNIPLTL-CHLSKLKILNLSS 214
           NL  L L+   + G  +       L+ L++L L  N +    P +   ++ +  +L+L+ 
Sbjct: 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163

Query: 215 NSL 217
           N +
Sbjct: 164 NKV 166

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.1 bits (125), Expect = 5e-08
 Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 7/117 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
           FS F +L+   +  N +    I       L+ L  L L  + L  I       L  L  L
Sbjct: 295 FSHFTDLEQLTLAQNEI--NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL 352

Query: 163 DLSDNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPL-TLCHLSKLKILNLSSNSL 217
           DLS N+I   +   +   L  LK L L +N L  ++P      L+ L+ + L +N  
Sbjct: 353 DLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.2 bits (151), Expect = 2e-11
 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 7/118 (5%)

Query: 124 SIPSEITALSMLQTLELPSSRLTGIIPSEM-GRLRNLVRLDLSDNYIGGYIPP-TLGRLS 181
           ++P  + +      L+L  + L+ +       RL NL  L LS N++  +I       + 
Sbjct: 32  NVPQSLPSY--TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVP 88

Query: 182 KLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPP-TLGHLTQLTTLAMSN 238
            L+ L+LSSN L          L  L++L L +N +V  +       + QL  L +S 
Sbjct: 89  NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQ 145

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.2 bits (133), Expect = 3e-09
 Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 10/137 (7%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
            +   NL S  +  N+L    I SE    +  L+ L+L S+ L  +       L+ L  L
Sbjct: 60  PTRLTNLHSLLLSHNHL--NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117

Query: 163 DLSDNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIP----LTLCHLSKLKILNLSSNSL 217
            L +N+I   +       +++L+ L LS N +    P         L KL +L+LSSN L
Sbjct: 118 LLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKL 175

Query: 218 VGNIPPTLGHLTQLTTL 234
                  L  L      
Sbjct: 176 KKLPLTDLQKLPAWVKN 192

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 10/121 (8%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
           F   PNL+   + SN+L   ++   + + L  L+ L L ++ +  +  +    +  L +L
Sbjct: 84  FVPVPNLRYLDLSSNHL--HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141

Query: 163 DLSDNYIGGYIPP----TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLK--ILNLSSNS 216
            LS N I    P        +L KL +L+LSSN L       L  L       L L +N 
Sbjct: 142 YLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200

Query: 217 L 217
           L
Sbjct: 201 L 201

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.5 bits (149), Expect = 3e-11
 Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 11/143 (7%)

Query: 107 FPNLKSFKIHSNYLLS-GSIPSEITALSM--LQTLELPSSRLTGIIPSEMGRLRNLVRLD 163
            P+L    + +    +  +  +E+       L+ L +  +        ++     L  LD
Sbjct: 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD 179

Query: 164 LSDNYIGGYIPPT----LGRLSKLKILNLSSNF---LVGNIPLTLCHLSKLKILNLSSNS 216
           LSDN   G           +   L++L L +       G          +L+ L+LS NS
Sbjct: 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239

Query: 217 LVGNIPPTL-GHLTQLTTLAMSN 238
           L            +QL +L +S 
Sbjct: 240 LRDAAGAPSCDWPSQLNSLNLSF 262

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.1 bits (148), Expect = 3e-11
 Identities = 35/149 (23%), Positives = 50/149 (33%), Gaps = 12/149 (8%)

Query: 98  ELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSE----M 153
            L        P LK   I   + L+ S    +     L TL+L  +   G          
Sbjct: 139 WLAELQQWLKPGLKVLSIAQAHSLNFSCEQ-VRVFPALSTLDLSDNPELGERGLISALCP 197

Query: 154 GRLRNLVRLDLSDNY---IGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLC-HLSKLKI 209
            +   L  L L +       G          +L+ L+LS N L        C   S+L  
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257

Query: 210 LNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
           LNLS   L   +P  L    +L+ L +S 
Sbjct: 258 LNLSFTGLKQ-VPKGLPA--KLSVLDLSY 283

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 57.6 bits (139), Expect = 5e-10
 Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%)

Query: 107 FPNLKSFKIHSNYL--LSGSIPSEITALSMLQTLELPSSRLTGIIPSEM-GRLRNLVRLD 163
           FP L+   + +  +   SG   +   A   LQ L+L  + L     +        L  L+
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 164 LSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVG 219
           LS   +   +P  L   +KL +L+LS N L    P     L ++  L+L  N  + 
Sbjct: 260 LSFTGLKQ-VPKGL--PAKLSVLDLSYNRL-DRNPSPD-ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.5 bits (131), Expect = 5e-09
 Identities = 24/145 (16%), Positives = 50/145 (34%), Gaps = 14/145 (9%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLT-GIIPSEMGRLRN-----LV 160
              L+   + +  + +G+ P  +   +      L    ++     + +  L+      L 
Sbjct: 94  ISGLQELTLENLEV-TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLK 152

Query: 161 RLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPL--TLC--HLSKLKILNLSSN- 215
            L ++  +   +    +     L  L+LS N  +G   L   LC      L++L L +  
Sbjct: 153 VLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212

Query: 216 --SLVGNIPPTLGHLTQLTTLAMSN 238
             +  G          QL  L +S+
Sbjct: 213 METPSGVCSALAAARVQLQGLDLSH 237

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.4 bits (123), Expect = 5e-08
 Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 12/142 (8%)

Query: 109 NLKSFKIHSNYLLSGSIPSEITALSM--LQTLELPSSRLTGIIPSEMGRL--RNLVRLDL 164
           +LK   + +  + S  +   +  L +  LQ L L +  +TG  P  +      +L  L+L
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 165 SDNYIGG--YIPPTLGRLSK--LKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGN 220
            +            L +  K  LK+L+++    +      +     L  L+LS N  +G 
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 221 IPPT----LGHLTQLTTLAMSN 238
                         L  LA+ N
Sbjct: 189 RGLISALCPLKFPTLQVLALRN 210

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.2 bits (99), Expect = 7e-05
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 5/92 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLD 163
            +    L+   +  N L   +        S L +L L  + L  +     G    L  LD
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK---GLPAKLSVLD 280

Query: 164 LSDNYIGGYIPPTLGRLSKLKILNLSSNFLVG 195
           LS N +     P+   L ++  L+L  N  + 
Sbjct: 281 LSYNRLDR--NPSPDELPQVGNLSLKGNPFLD 310

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.5 bits (147), Expect = 4e-11
 Identities = 38/137 (27%), Positives = 54/137 (39%), Gaps = 7/137 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLD 163
               P L +  +  N L   S+P     L  L  L++  +RLT +    +  L  L  L 
Sbjct: 73  DGTLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130

Query: 164 LSDNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPLTLC-HLSKLKILNLSSNSLVGNI 221
           L  N +   +PP  L    KL+ L+L++N L   +P  L   L  L  L L  NSL   I
Sbjct: 131 LKGNEL-KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TI 187

Query: 222 PPTLGHLTQLTTLAMSN 238
           P        L    +  
Sbjct: 188 PKGFFGSHLLPFAFLHG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 12/107 (11%)

Query: 135 LQTLELPSSRLTGI---IPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSN 191
              +      LT +   +P       +   L LS+N +  +   TL   ++L  LNL   
Sbjct: 12  HLEVNCDKRNLTALPPDLPK------DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 192 FLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
            L   +      L  L  L+LS N L  ++P     L  LT L +S 
Sbjct: 66  EL-TKLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.1 bits (146), Expect = 7e-11
 Identities = 29/145 (20%), Positives = 61/145 (42%), Gaps = 7/145 (4%)

Query: 98  ELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRL 156
            +   +     NL++  + SN +   +I  +  ++L  L+ L+L  + L+ +  S    L
Sbjct: 66  YISNSDLQRCVNLQALVLTSNGI--NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPL 123

Query: 157 RNLVRLDLSDNYIGGYIPP--TLGRLSKLKILNLSSNFLVGNIPL-TLCHLSKLKILNLS 213
            +L  L+L  N     +        L+KL+IL + +      I       L+ L+ L + 
Sbjct: 124 SSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182

Query: 214 SNSLVGNIPPTLGHLTQLTTLAMSN 238
           ++ L    P +L  +  ++ L +  
Sbjct: 183 ASDLQSYEPKSLKSIQNVSHLILHM 207

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 58.2 bits (141), Expect = 3e-10
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 124 SIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPP-TLGRLSK 182
           SIPS +T    +++L+L ++R+T I  S++ R  NL  L L+ N I   I   +   L  
Sbjct: 45  SIPSGLTEA--VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGS 101

Query: 183 LKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPP--TLGHLTQLTTLAMSNKV 240
           L+ L+LS N+L          LS L  LNL  N     +       HLT+L  L + N  
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMD 160

Query: 241 AI 242
             
Sbjct: 161 TF 162

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 13/146 (8%)

Query: 104 FSCFPNLKSFKIHSNYLLS---GSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLV 160
           F    +L    +  N   +    S+ S +T L +L+   +     T I   +   L  L 
Sbjct: 120 FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD--TFTKIQRKDFAGLTFLE 177

Query: 161 RLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGN 220
            L++  + +  Y P +L  +  +  L L     +  + + +   S ++ L L    L   
Sbjct: 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237

Query: 221 ----IPP----TLGHLTQLTTLAMSN 238
               +      +L        + +++
Sbjct: 238 HFSELSTGETNSLIKKFTFRNVKITD 263

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 23/145 (15%), Positives = 53/145 (36%), Gaps = 14/145 (9%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
           F+    L+  +I ++ L   S   +   ++  +  L L   +   ++   +    ++  L
Sbjct: 170 FAGLTFLEELEIDASDL--QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227

Query: 163 DLSDNYIGG----YIPP----TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSS 214
           +L D  +       +      +L +    + + ++   L   +   L  +S L  L  S 
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSR 286

Query: 215 NSLVGNIPP-TLGHLTQLTTLAMSN 238
           N L  ++P      LT L  + +  
Sbjct: 287 NQLK-SVPDGIFDRLTSLQKIWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.5 bits (108), Expect = 5e-06
 Identities = 20/123 (16%), Positives = 40/123 (32%), Gaps = 12/123 (9%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLEL--------PSSRLTGIIPSEMG 154
                N+    +H        +        S ++ LEL          S L+    + + 
Sbjct: 194 LKSIQNVSHLILHMKQH--ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI 251

Query: 155 RLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSS 214
           +      + ++D  +   +   L ++S L  L  S N L          L+ L+ + L +
Sbjct: 252 KKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310

Query: 215 NSL 217
           N  
Sbjct: 311 NPW 313

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 11/137 (8%)

Query: 102 FNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVR 161
              +   ++K+  + S  +   +  + +  LS LQ L L  +++T I  S +  L NL  
Sbjct: 101 SAIAGLQSIKTLDLTSTQI---TDVTPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQY 155

Query: 162 LDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNI 221
           L + +  +    P  L  LSKL  L    N +  +I   L  L  L  ++L +N +  ++
Sbjct: 156 LSIGNAQVSDLTP--LANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQIS-DV 210

Query: 222 PPTLGHLTQLTTLAMSN 238
            P L + + L  + ++N
Sbjct: 211 SP-LANTSNLFIVTLTN 226

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.2 bits (141), Expect = 3e-10
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 11/136 (8%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
             +    + +       +   +I   +  L+ L  LEL  +++T +  + +  L  +  L
Sbjct: 36  TQADLDGITTLSAFGTGV--TTI-EGVQYLNNLIGLELKDNQITDL--APLKNLTKITEL 90

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
           +LS N +       +  L  +K L+L+S  +    PL    LS L++L L  N +  NI 
Sbjct: 91  ELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTPL--AGLSNLQVLYLDLNQIT-NIS 145

Query: 223 PTLGHLTQLTTLAMSN 238
           P L  LT L  L++ N
Sbjct: 146 P-LAGLTNLQYLSIGN 160

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.8 bits (122), Expect = 8e-08
 Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 9/132 (6%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
             +   NL+   +  N +   +  S +  L+ LQ L + +++++ +  + +  L  L  L
Sbjct: 124 PLAGLSNLQVLYLDLNQI---TNISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTL 178

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
              DN I    P  L  L  L  ++L +N +    PL   + S L I+ L++ ++     
Sbjct: 179 KADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTNQTITNQPV 234

Query: 223 PTLGHLTQLTTL 234
               +L     +
Sbjct: 235 FYNNNLVVPNVV 246

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 10/122 (8%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
             +   NL+   I +  +   S  + +  LS L TL+   ++++ I  S +  L NL+ +
Sbjct: 146 PLAGLTNLQYLSIGNAQV---SDLTPLANLSKLTTLKADDNKISDI--SPLASLPNLIEV 200

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
            L +N I    P  L   S L I+ L++  +         + + L + N+        I 
Sbjct: 201 HLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVF---YNNNLVVPNVVKGPSGAPIA 255

Query: 223 PT 224
           P 
Sbjct: 256 PA 257

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 156 LRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSN 215
           L N +++    + +      T   L  +  L+      V  I   + +L+ L  L L  N
Sbjct: 18  LANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDN 73

Query: 216 SLVGNIPPTLGHLTQLTTLAMSN 238
            +  ++ P L +LT++T L +S 
Sbjct: 74  QIT-DLAP-LKNLTKITELELSG 94

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.4 bits (139), Expect = 3e-10
 Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 6/117 (5%)

Query: 124 SIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPP-TLGRLSK 182
            IP+ +     +  + L  + +  I P      + L R+DLS+N I   + P     L  
Sbjct: 25  EIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRS 81

Query: 183 LKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPP-TLGHLTQLTTLAMSN 238
           L  L L  N +          L  L++L L++N +   +       L  L  L++ +
Sbjct: 82  LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYD 137

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 4/109 (3%)

Query: 132 LSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPP-TLGRLSKLKILNLSS 190
              L+ ++L +++++ + P     LR+L  L L  N I   +P      L  L++L L++
Sbjct: 55  YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNA 113

Query: 191 NFLVGNIPL-TLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
           N +   + +     L  L +L+L  N L      T   L  + T+ ++ 
Sbjct: 114 NKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 5/114 (4%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
           FS +  L+   + +N +    +  +    L  L +L L  +++T +  S    L +L  L
Sbjct: 52  FSPYKKLRRIDLSNNQI--SELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL 109

Query: 163 DLSDNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSN 215
            L+ N I   +       L  L +L+L  N L      T   L  ++ ++L+ N
Sbjct: 110 LLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 11/142 (7%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
           +    +L +  +  N +   S+     + LS LQ L    + L  +    +G L+ L  L
Sbjct: 72  YQSLSHLSTLILTGNPI--QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 163 DLSDNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPL-TLCHLSKLKI----LNLSSNS 216
           +++ N I  +  P     L+ L+ L+LSSN +  +I    L  L ++ +    L+LS N 
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 217 LVGNIPPTLGHLTQLTTLAMSN 238
           +   I P      +L  LA+  
Sbjct: 189 M-NFIQPGAFKEIRLKELALDT 209

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.5 bits (137), Expect = 8e-10
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 8/118 (6%)

Query: 124 SIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPP-TLGRLSK 182
            IP  +      + L+L  + L  +          L  LDLS   I   I       LS 
Sbjct: 21  KIPDNLPFS--TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSH 77

Query: 183 LKILNLSSNFLVGNIPL-TLCHLSKLKILNLSSNSLVGNIPP-TLGHLTQLTTLAMSN 238
           L  L L+ N  + ++ L     LS L+ L     +L  ++    +GHL  L  L +++
Sbjct: 78  LSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAH 133

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL---- 159
                 LK   +  N + S  +P   + L+ L+ L+L S+++  I  +++  L  +    
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSN 215
           + LDLS N +  +I P   +  +LK L L +N L          L+ L+ + L +N
Sbjct: 180 LSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.1 bits (138), Expect = 7e-10
 Identities = 24/136 (17%), Positives = 50/136 (36%), Gaps = 8/136 (5%)

Query: 106 CFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLS 165
           C  + + F    + +    IPS++        L    ++L  I         +L ++++S
Sbjct: 7   CHCSNRVFLCQESKVTE--IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEIS 62

Query: 166 DNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPLTLC-HLSKLKILNLSSNSLVGNIPP 223
            N +   I       L KL  + +     +  I      +L  L+ L +S+  +  ++P 
Sbjct: 63  QNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPD 121

Query: 224 -TLGHLTQLTTLAMSN 238
               H  Q   L + +
Sbjct: 122 VHKIHSLQKVLLDIQD 137

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 35/140 (25%), Positives = 55/140 (39%), Gaps = 8/140 (5%)

Query: 104 FSCFPNLKSFKI-HSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRLRNLVR 161
           FS  P L   +I  +N LL   I  E    L  LQ L + ++ +  +           V 
Sbjct: 75  FSNLPKLHEIRIEKANNLLY--INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL 132

Query: 162 LDLSDNYIGGYIPPTL--GRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVG 219
           LD+ DN     I      G   +  IL L+ N +   I  +  + ++L  LNLS N+ + 
Sbjct: 133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE 191

Query: 220 NIPP-TLGHLTQLTTLAMSN 238
            +P       +    L +S 
Sbjct: 192 ELPNDVFHGASGPVILDISR 211

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 29/144 (20%), Positives = 48/144 (33%), Gaps = 9/144 (6%)

Query: 98  ELGRFNFSCFPNLKSFKIHSNYLLSGSIPSE-ITALSM-LQTLELPSSRLTGIIPSEMGR 155
            L   +           I  N  +  +I       LS     L L  + +   I +    
Sbjct: 118 HLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFN 175

Query: 156 LRNLVRLDLSDNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSS 214
              L  L+LSDN     +P       S   IL++S   +       L +L KL+  +  +
Sbjct: 176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 235

Query: 215 NSLVGNIPPTLGHLTQLTTLAMSN 238
              +    PTL  L  L   +++ 
Sbjct: 236 LKKL----PTLEKLVALMEASLTY 255

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 7/110 (6%)

Query: 108 PNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSS-RLTGIIPSEMGRLRNLVRLDLSD 166
                  ++ N +    I +     + L  L L  +  L  +           V LD+S 
Sbjct: 154 FESVILWLNKNGI--QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211

Query: 167 NYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNS 216
             I       L  L KL+  +  +   +     TL  L  L   +L+  S
Sbjct: 212 TRIHSLPSYGLENLKKLRARSTYNLKKLP----TLEKLVALMEASLTYPS 257

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 11/137 (8%)

Query: 102 FNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVR 161
           F+   F       +    +           L+ +  +   +S +  +    +  L N+ +
Sbjct: 18  FSDDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTK 72

Query: 162 LDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNI 221
           L L+ N +   I P L  L  L  L L  N  V ++  +L  L KLK L+L  N +  +I
Sbjct: 73  LFLNGNKLT-DIKP-LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLSLEHNGIS-DI 127

Query: 222 PPTLGHLTQLTTLAMSN 238
              L HL QL +L + N
Sbjct: 128 NG-LVHLPQLESLYLGN 143

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 11/137 (8%)

Query: 102 FNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVR 161
              +   NL    +  N +      S +  L  L++L L  + ++ I    +  L  L  
Sbjct: 84  KPLANLKNLGWLFLDENKV---KDLSSLKDLKKLKSLSLEHNGISDING--LVHLPQLES 138

Query: 162 LDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNI 221
           L L +N I       L RL+KL  L+L  N +  +I   L  L+KL+ L LS N +  ++
Sbjct: 139 LYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS-DL 193

Query: 222 PPTLGHLTQLTTLAMSN 238
              L  L  L  L + +
Sbjct: 194 RA-LAGLKNLDVLELFS 209

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 11/136 (8%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
             +   ++     +++ +   S+   I  L  +  L L  ++LT I    +  L+NL  L
Sbjct: 41  TQNELNSIDQIIANNSDI--KSV-QGIQYLPNVTKLFLNGNKLTDI--KPLANLKNLGWL 95

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
            L +N +       L  L KLK L+L  N +     L   HL +L+ L L +N +  +I 
Sbjct: 96  FLDENKVKDLSS--LKDLKKLKSLSLEHNGISDINGLV--HLPQLESLYLGNNKIT-DIT 150

Query: 223 PTLGHLTQLTTLAMSN 238
             L  LT+L TL++ +
Sbjct: 151 V-LSRLTKLDTLSLED 165

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 7/116 (6%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
                P L+S  + +N +   +  + ++ L+ L TL L  ++++ I    +  L  L  L
Sbjct: 129 GLVHLPQLESLYLGNNKI---TDITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNL 183

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV 218
            LS N+I       L  L  L +L L S   +        +L     +  +  SLV
Sbjct: 184 YLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 54.2 bits (131), Expect = 5e-09
 Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 5/137 (3%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
           F    NL++  +  N L   ++P  +   L  L  L L  ++L  + P     L  L  L
Sbjct: 81  FKELKNLETLWVTDNKL--QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL 138

Query: 163 DLSDNYIGGYIPPTL-GRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNI 221
            L  N +   +P  +  +L+ LK L L +N L          L++LK L L +N L    
Sbjct: 139 SLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197

Query: 222 PPTLGHLTQLTTLAMSN 238
                 L +L  L +  
Sbjct: 198 EGAFDSLEKLKMLQLQE 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 54.2 bits (131), Expect = 6e-09
 Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 7/138 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
           F     L+   ++ N L   ++P+ I   L  L+TL +  ++L  +      +L NL  L
Sbjct: 57  FHRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114

Query: 163 DLSDNYIGGYIPPTL-GRLSKLKILNLSSNFLVGNIPLTLC-HLSKLKILNLSSNSLVGN 220
            L  N +   +PP +   L+KL  L+L  N L  ++P  +   L+ LK L L +N L   
Sbjct: 115 RLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRV 172

Query: 221 IPPTLGHLTQLTTLAMSN 238
                  LT+L TL + N
Sbjct: 173 PEGAFDKLTELKTLKLDN 190

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 13/109 (11%)

Query: 135 LQTLELPSSRLTGI---IPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSN 191
             +++  S +LT I   IP+      +  +LDL  N +         RL+KL++L L+ N
Sbjct: 18  KNSVDCSSKKLTAIPSNIPA------DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN 71

Query: 192 FLVGNIPLTLCH-LSKLKILNLSSNSLVGNIPP-TLGHLTQLTTLAMSN 238
            L   +P  +   L  L+ L ++ N L   +P      L  L  L +  
Sbjct: 72  KLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDR 118

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.5 bits (129), Expect = 8e-09
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 18/139 (12%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSM---LQTLELPSSRLTGIIPSEMGRLRNL 159
               F NLK   +  N +      S+++ L     L+ L +  +RL  +          L
Sbjct: 58  GMQFFTNLKELHLSHNQI------SDLSPLKDLTKLEELSVNRNRLKNLNGIP---SACL 108

Query: 160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVG 219
            RL L +N +      +L  L  L+IL++ +N L  +I   L  LSKL++L+L  N +  
Sbjct: 109 SRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEIT- 163

Query: 220 NIPPTLGHLTQLTTLAMSN 238
           N    L  L ++  + ++ 
Sbjct: 164 NTGG-LTRLKKVNWIDLTG 181

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 14/134 (10%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSM--LQTLELPSSRLTGIIPSEMGRLRNLV 160
                  L+   ++ N L        +  +    L  L L ++ L       +  L+NL 
Sbjct: 80  PLKDLTKLEELSVNRNRL------KNLNGIPSACLSRLFLDNNELRDT--DSLIHLKNLE 131

Query: 161 RLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGN 220
            L + +N +   I   LG LSKL++L+L  N +     LT   L K+  ++L+    V  
Sbjct: 132 ILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGGLT--RLKKVNWIDLTGQKCVNE 187

Query: 221 IPPTLGHLTQLTTL 234
                  L    T+
Sbjct: 188 PVKYQPELYITNTV 201

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 6/83 (7%)

Query: 156 LRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSN 215
           L N V+ +L    +   +      LS ++  N  ++ +  ++   +   + LK L+LS N
Sbjct: 18  LANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHN 73

Query: 216 SLVGNIPPTLGHLTQLTTLAMSN 238
            +  ++ P L  LT+L  L+++ 
Sbjct: 74  QIS-DLSP-LKDLTKLEELSVNR 94

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 10/118 (8%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSD 166
              L    + +N L        +  L  L+ L + +++L  I    +G L  L  LDL  
Sbjct: 105 SACLSRLFLDNNEL---RDTDSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHG 159

Query: 167 NYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPT 224
           N I       L RL K+  ++L+    V      + +  +L I N   +     I P 
Sbjct: 160 NEITNTGG--LTRLKKVNWIDLTGQKCV---NEPVKYQPELYITNTVKDPDGRWISPY 212

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.0 bits (129), Expect = 9e-09
 Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 4/107 (3%)

Query: 114 KIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEM-GRLRNLVRLDLSDNYIGGY 172
            +      +      +     L  L + + +    +       L  L  L +  + +  +
Sbjct: 12  GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RF 70

Query: 173 IPP-TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV 218
           + P       +L  LNLS N L      T+  LS L+ L LS N L 
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 8e-07
 Identities = 26/126 (20%), Positives = 40/126 (31%), Gaps = 8/126 (6%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSE-ITALSMLQTLELPSSRLTGIIPSEMGRLRNLVR 161
           +     NL    I +   L   +    +  L  L+ L +  S L  + P        L R
Sbjct: 26  HLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 162 LDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNI 221
           L+LS N +   +     +   L+ L LS N L  +     C L  L+         V   
Sbjct: 85  LNLSFNAL-ESLSWKTVQGLSLQELVLSGNPLHCS-----CALRWLQRWEEEGLGGVPEQ 138

Query: 222 PPTLGH 227
                 
Sbjct: 139 KLQCHG 144

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 1e-06
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 149 IPSEMGRLRNLVRLDLSDNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKL 207
               +    NL  L + +     ++    L  L +L+ L +  + L    P       +L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 208 KILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
             LNLS N+L  ++         L  L +S 
Sbjct: 83  SRLNLSFNALE-SLSWKTVQGLSLQELVLSG 112

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 4/125 (3%)

Query: 116 HSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPP 175
           ++N             L  L+ +   ++++T I          +  + L+ N +   +  
Sbjct: 40  NNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN-VQH 98

Query: 176 -TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPP-TLGHLTQLTT 233
                L  LK L L SN +      +   LS +++L+L  N +   + P     L  L+T
Sbjct: 99  KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLST 157

Query: 234 LAMSN 238
           L +  
Sbjct: 158 LNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 5/114 (4%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
           F   P L+     +N +    I        S +  + L S+RL  +       L +L  L
Sbjct: 53  FKKLPQLRKINFSNNKI--TDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110

Query: 163 DLSDNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSN 215
            L  N I   +   +   LS +++L+L  N +    P     L  L  LNL +N
Sbjct: 111 MLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 12/131 (9%)

Query: 108 PNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDN 167
            N  S ++ + + +  +       L+ L +L+  +S +T +  + + +L  L +L  + N
Sbjct: 18  DNFAS-EVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSN 74

Query: 168 YIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGH 227
            I   +   L + + L  L   SN L     L +  L+KL  LN  +N L   +   +  
Sbjct: 75  NI-TTLD--LSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKL-TKLD--VSQ 125

Query: 228 LTQLTTLAMSN 238
              LT L  + 
Sbjct: 126 NPLLTYLNCAR 136

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 28/136 (20%), Positives = 50/136 (36%), Gaps = 15/136 (11%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
                  L      SN +   ++   ++  + L  L   S++LT +   ++  L  L  L
Sbjct: 59  GIEKLTGLTKLICTSNNI--TTLD--LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYL 111

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
           +   N +       + +   L  LN + N L     + + H ++L  L+   N       
Sbjct: 112 NCDTNKLTKL---DVSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKK--ITK 163

Query: 223 PTLGHLTQLTTLAMSN 238
             +   TQLTTL  S 
Sbjct: 164 LDVTPQTQLTTLDCSF 179

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.0 bits (125), Expect = 5e-08
 Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 15/137 (10%)

Query: 102 FNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVR 161
            + +    L  F    N L    +   ++ LS L TL    + L  I   ++     L+ 
Sbjct: 227 IDVTPLTQLTYFDCSVNPL--TELD--VSTLSKLTTLHCIQTDLLEI---DLTHNTQLIY 279

Query: 162 LDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNI 221
                          +   ++L +L+  +  +     L L    KL  L L++  L   +
Sbjct: 280 FQAEGCRK--IKELDVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-EL 333

Query: 222 PPTLGHLTQLTTLAMSN 238
              + H T+L +L+  N
Sbjct: 334 D--VSHNTKLKSLSCVN 348

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.2 bits (123), Expect = 8e-08
 Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 14/140 (10%)

Query: 99  LGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN 158
           L   + S    L +       L       EI      Q +   +     I   ++     
Sbjct: 245 LTELDVSTLSKLTTLHCIQTDL------LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQ 298

Query: 159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV 218
           L  LD     I   +   L +  KL  L L++  L   + ++  H +KLK L+  +  + 
Sbjct: 299 LYLLDCQAAGI-TELD--LSQNPKLVYLYLNNTELT-ELDVS--HNTKLKSLSCVNAHIQ 352

Query: 219 GNIPPTLGHLTQLTTLAMSN 238
            +    +G +  L     + 
Sbjct: 353 -DFSS-VGKIPALNNNFEAE 370

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 15/141 (10%)

Query: 98  ELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLR 157
            +   + S   NL      SN L   ++   +T L+ L  L   +++LT +  S+     
Sbjct: 75  NITTLDLSQNTNLTYLACDSNKL--TNLD--VTPLTKLTYLNCDTNKLTKLDVSQ---NP 127

Query: 158 NLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSL 217
            L  L+ + N +       +   ++L  L+   N       L +   ++L  L+ S N +
Sbjct: 128 LLTYLNCARNTL---TEIDVSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKI 182

Query: 218 VGNIPPTLGHLTQLTTLAMSN 238
              +   +     L  L    
Sbjct: 183 T-ELD--VSQNKLLNRLNCDT 200

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 37/141 (26%), Positives = 50/141 (35%), Gaps = 15/141 (10%)

Query: 98  ELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLR 157
           +L + + S  P L       N L      +EI      Q  EL       I   ++    
Sbjct: 117 KLTKLDVSQNPLLTYLNCARNTL------TEIDVSHNTQLTELDCHLNKKITKLDVTPQT 170

Query: 158 NLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSL 217
            L  LD S N I       + +   L  LN  +N +     L L    +L  L+ SSN L
Sbjct: 171 QLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKL 224

Query: 218 VGNIPPTLGHLTQLTTLAMSN 238
              I   +  LTQLT    S 
Sbjct: 225 T-EID--VTPLTQLTYFDCSV 242

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 15/136 (11%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
           + +    L      SN L       ++T L+ L   +   + LT +  S    L  L  L
Sbjct: 207 DLNQNIQLTFLDCSSNKLTE----IDVTPLTQLTYFDCSVNPLTELDVST---LSKLTTL 259

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
                 +   I   L   ++L               L + H ++L +L+  +  +   + 
Sbjct: 260 HCIQTDLL-EID--LTHNTQLIYFQAEGCRK--IKELDVTHNTQLYLLDCQAAGIT-ELD 313

Query: 223 PTLGHLTQLTTLAMSN 238
             L    +L  L ++N
Sbjct: 314 --LSQNPKLVYLYLNN 327

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 19/141 (13%), Positives = 52/141 (36%), Gaps = 12/141 (8%)

Query: 98  ELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLR 157
           +L   + +    L  F+      +      ++T  + L  L+  ++ +T +   ++ +  
Sbjct: 265 DLLEIDLTHNTQLIYFQAEGCRKIK---ELDVTHNTQLYLLDCQAAGITEL---DLSQNP 318

Query: 158 NLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSL 217
            LV L L++  +   +   +   +KLK L+  +  +  +   ++  +  L     +    
Sbjct: 319 KLVYLYLNNTEL-TELD--VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQT 373

Query: 218 VGNIPPTLGHLTQLTTLAMSN 238
           +  +P        LT     +
Sbjct: 374 I-TMPKETLTNNSLTIAVSPD 393

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.0 bits (127), Expect = 2e-08
 Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 7/139 (5%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLT-GIIPSEMGRLRNLV 160
             S    L++  +  N L +    + +   +S L+TL++  + L             +++
Sbjct: 372 GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431

Query: 161 RLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGN 220
            L+LS N + G +   L    K+K+L+L +N +  +IP  + HL  L+ LN++SN L  +
Sbjct: 432 VLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLK-S 487

Query: 221 IPP-TLGHLTQLTTLAMSN 238
           +P      LT L  + + +
Sbjct: 488 VPDGVFDRLTSLQYIWLHD 506

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.1 bits (117), Expect = 5e-07
 Identities = 31/203 (15%), Positives = 56/203 (27%), Gaps = 9/203 (4%)

Query: 36  LLSSPVQLEREALLITGWWYDNWATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNM 95
           L S  V +   AL              N  +     T +   + G  +    L +     
Sbjct: 208 LFSVQVNMSVNALGHLQLSNIKL----NDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263

Query: 96  KGELGRFNFSCFPNLKSFKIHSNYLLS----GSIPSEITALSMLQTLELPSSRLTGIIPS 151
           K  +  F F     ++   I++  +             TAL  L    + +        +
Sbjct: 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA 323

Query: 152 EMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILN 211
                  +    LS +             S    LN + N    ++      L +L+ L 
Sbjct: 324 LYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI 383

Query: 212 LSSNSLVGNIPPTLGHLTQLTTL 234
           L  N L  N          +++L
Sbjct: 384 LQRNGLK-NFFKVALMTKNMSSL 405

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 48.3 bits (115), Expect = 9e-07
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 126 PSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKI 185
             +I+ LS L+ L L  +R+  +        ++L  LD+S N +   I      ++ L+ 
Sbjct: 69  MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISC--CPMASLRH 125

Query: 186 LNLSSNFLVGNIPLTLC--HLSKLKILNLSSNSLVGNIPPTLGHLTQLTTL 234
           L+LS N     +P+     +L+KL  L LS+          + HL     L
Sbjct: 126 LDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCIL 175

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 19/139 (13%), Positives = 42/139 (30%), Gaps = 7/139 (5%)

Query: 108 PNLKSFKIHSNYLLSGSIPS--EITALSMLQTLELPSSRLTGIIPSEMGR-----LRNLV 160
           P L +  +              +      ++ L + +  +T  I  E        L++L+
Sbjct: 249 PTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLM 308

Query: 161 RLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGN 220
              + +              +++ I  LS +       +     S    LN + N    +
Sbjct: 309 IEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS 368

Query: 221 IPPTLGHLTQLTTLAMSNK 239
           +      L +L TL +   
Sbjct: 369 VFQGCSTLKRLQTLILQRN 387

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.6 bits (100), Expect = 7e-05
 Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%)

Query: 104 FSCFPNLKSFKIHSNY---LLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLV 160
                N+ S +        L S +          +  L L S+ LTG +   +     + 
Sbjct: 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVK 453

Query: 161 RLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPL-TLCHLSKLKILNLSSN 215
            LDL +N I   IP  +  L  L+ LN++SN L  ++P      L+ L+ + L  N
Sbjct: 454 VLDLHNNRIMS-IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 5/108 (4%)

Query: 135 LQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPP-TLGRLSKLKILNLSSNFL 193
            QTL+L  + L  I       L N+ R+ +S +     +   +   LSK+  + + +   
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 194 VGNIPL-TLCHLSKLKILNLSSNSLVGNIPPT--LGHLTQLTTLAMSN 238
           +  I    L  L  LK L + +  L    P    +        L +++
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITD 139

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 7/136 (5%)

Query: 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEM--GRLRNLVR 161
               P LK   I +  L      +++ +  +   LE+  +     IP     G     + 
Sbjct: 101 LKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLT 160

Query: 162 LDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCH--LSKLKILNLSSNSLVG 219
           L L +N     +       +KL  + L+ N  +  I         S   +L++S  S+  
Sbjct: 161 LKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT- 218

Query: 220 NIPP-TLGHLTQLTTL 234
            +P   L HL +L   
Sbjct: 219 ALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 10/138 (7%)

Query: 108 PNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSS-RLTGIIPSEMGRLRNLVRLDLS 165
           P+ ++ K+   +L +  IPS   + L  +  + +     L  +       L  +  +++ 
Sbjct: 31  PSTQTLKLIETHLRT--IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 166 DNYIGGYIPP-TLGRLSKLKILNLSSNFLVGNIP--LTLCHLSKLKILNLSSNSLVGNIP 222
           +     YI P  L  L  LK L + +  L    P    +       IL ++ N  + +IP
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIP 147

Query: 223 P-TLGHLT-QLTTLAMSN 238
                 L  +  TL + N
Sbjct: 148 VNAFQGLCNETLTLKLYN 165

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.3 bits (118), Expect = 7e-08
 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 6/119 (5%)

Query: 98  ELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLR 157
           EL     S   ++K   + ++    G +         L+ L   +  LT I  + + +L 
Sbjct: 10  ELRNRTPS---DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLN 64

Query: 158 NLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVG-NIPLTLCHLSKLKILNLSSN 215
            L +L+LSDN + G +     +   L  LNLS N +   +    L  L  LK L+L + 
Sbjct: 65  KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 6/111 (5%)

Query: 131 ALSMLQTLELPSSRLTGI-IPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLS 189
             S ++ L L +SR     +         L  L   +  +   I   L +L+KLK L LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72

Query: 190 SNFLVGNIPLTLCHLSKLKILNLSSNSL--VGNIPPTLGHLTQLTTLAMSN 238
            N + G + +       L  LNLS N +  +  I P L  L  L +L + N
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP-LKKLENLKSLDLFN 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 8/115 (6%)

Query: 127 SEITALSMLQTLELPSSRLTGIIPSEMGR-LRNLVRLDLSDNYIGGYIPPTLGRLSKLKI 185
           ++ T     + L+L   ++  I    +G  L     +D SDN I          L +LK 
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKT 68

Query: 186 LNLSSNFLVGNIPLTLCHLSKLKILNLSSNSL--VGNIPPTLGHLTQLTTLAMSN 238
           L +++N +          L  L  L L++NSL  +G++ P L  L  LT L +  
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP-LASLKSLTYLCILR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 7/115 (6%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
            ++     +   +    +    I +    L     ++   + +  +       LR L  L
Sbjct: 14  QYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTL 69

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFL--VGNIPLTLCHLSKLKILNLSSN 215
            +++N I          L  L  L L++N L  +G++   L  L  L  L +  N
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRN 123

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 4/116 (3%)

Query: 124 SIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKL 183
           S+PS I A +  + L+L S+ L  +  +    L  L  L+L  N +          L++L
Sbjct: 28  SVPSGIPADT--EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85

Query: 184 KILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTL-GHLTQLTTLAMSN 238
             L L++N L         HL++L  L L  N L   +P  +   LT+L  L ++ 
Sbjct: 86  GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNT 140

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 7/150 (4%)

Query: 92  NDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIP 150
                  L    F     L    +  N L   ++ + +   L+ L TL L +++L  +  
Sbjct: 43  QSTGLATLSDATFRGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQLASLPL 100

Query: 151 SEMGRLRNLVRLDLSDNYIGGYIPPTL-GRLSKLKILNLSSNFLVGNIPL-TLCHLSKLK 208
                L  L +L L  N +   +P  +  RL+KLK L L++N L  +IP      L+ L+
Sbjct: 101 GVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQ 158

Query: 209 ILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
            L+LS+N L          L +L T+ +  
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 30/170 (17%), Positives = 53/170 (31%), Gaps = 17/170 (10%)

Query: 65  TSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGS 124
             +  + + I       V+    L                   PNLKS +I S  L    
Sbjct: 150 DFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSV 209

Query: 125 IPSEITA-LSMLQTLEL--------PSSRLTGIIPS-EMGRLRNLVRLDLSDNYIGGYIP 174
           +   + + L  L+ L L            +    P     R  NL  L + D      + 
Sbjct: 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVV 269

Query: 175 PTLGR---LSKLKILNLSSNFL----VGNIPLTLCHLSKLKILNLSSNSL 217
                   L +L+ +++S+  L       +   +  +  LK +N+  N L
Sbjct: 270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 10/134 (7%)

Query: 107 FPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSD 166
              ++   + +     G I         L+ L L +  L  +  S + +L  L +L+LS+
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSE 80

Query: 167 NYIGGYIPPTLGRLSKLKILNLSSNFL--VGNIPLTLCHLSKLKILNLSSNSLVGNIPP- 223
           N I G +     +L  L  LNLS N L  +  +   L  L  LK L+L +  +  N+   
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNCEVT-NLNDY 138

Query: 224 ---TLGHLTQLTTL 234
                  L QLT L
Sbjct: 139 RESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 8/85 (9%)

Query: 156 LRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFL--VGNIPLTLCHLSKLKILNLS 213
           +R LV LD   +  G  I         L+ L+L +  L  V N+P     L KLK L LS
Sbjct: 26  VRELV-LDNCKSNDG-KIEGLTAEFVNLEFLSLINVGLISVSNLP----KLPKLKKLELS 79

Query: 214 SNSLVGNIPPTLGHLTQLTTLAMSN 238
            N + G +      L  LT L +S 
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSG 104

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.4 bits (113), Expect = 8e-07
 Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 3/115 (2%)

Query: 124 SIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKL 183
           S+P+ I   +  Q L L  +++T + P     L NL  L L  N +G         L++L
Sbjct: 33  SVPAGIPTNA--QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL 90

Query: 184 KILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
            +L+L +N L          L  LK L +  N L   +P  +  LT LT LA+  
Sbjct: 91  TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQ 144

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 11/93 (11%)

Query: 149 IPSEMGRLRNLVRLDLSDNYIG---GYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLS 205
           + + +  L+    L LS N I          L  +  L+IL+L  N +   I        
Sbjct: 40  MDATLSTLKACKHLALSTNNIEKISS-----LSGMENLRILSLGRNLIK-KIENLDAVAD 93

Query: 206 KLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
            L+ L +S N +  ++   +  L  L  L MSN
Sbjct: 94  TLEELWISYNQIA-SLSG-IEKLVNLRVLYMSN 124

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 125 IPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLK 184
           + + ++ L   + L L ++ +  I  S +  + NL  L L  N I   I         L+
Sbjct: 40  MDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-KIENLDAVADTLE 96

Query: 185 ILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSL--VGNIPPTLGHLTQLTTLAMSN 238
            L +S N +  ++   +  L  L++L +S+N +   G I   L  L +L  L ++ 
Sbjct: 97  ELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKITNWGEIDK-LAALDKLEDLLLAG 149

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 19/144 (13%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162
             S     K   + +N +    I S ++ +  L+ L L  + +  I   +      L  L
Sbjct: 43  TLSTLKACKHLALSTNNI--EKI-SSLSGMENLRILSLGRNLIKKIENLD-AVADTLEEL 98

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFL--VGNIPLTLCHLSKLKILNLSSNSLVGN 220
            +S N I   +   + +L  L++L +S+N +   G I   L  L KL+ L L+ N L  +
Sbjct: 99  WISYNQIA-SLSG-IEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPLYND 155

Query: 221 IPPT----------LGHLTQLTTL 234
                         +  L  L  L
Sbjct: 156 YKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 8/82 (9%)

Query: 159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFL--VGNIPLTLCHLSKLKILNLSSNS 216
            V L      I   +  TL  L   K L LS+N +  + +    L  +  L+IL+L  N 
Sbjct: 27  KVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIEKISS----LSGMENLRILSLGRNL 81

Query: 217 LVGNIPPTLGHLTQLTTLAMSN 238
           +   I         L  L +S 
Sbjct: 82  IK-KIENLDAVADTLEELWISY 102

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 4/116 (3%)

Query: 124 SIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKL 183
           S+P+ I A +    L+L ++ L  +       L +L +L L  N +         +L+ L
Sbjct: 21  SVPTGIPAQT--TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78

Query: 184 KILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPP-TLGHLTQLTTLAMSN 238
             LNLS+N L          L++LK L L++N L  ++P      LTQL  L +  
Sbjct: 79  TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQ 133

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 124 SIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKL 183
            +P  I        L L  ++ T ++P E+   ++L  +DLS+N I      +   +++L
Sbjct: 24  VLPKGIPRDV--TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80

Query: 184 KILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPP-TLGHLTQLTTLAMSN 238
             L LS N L    P T   L  L++L+L  N +   +P      L+ L+ LA+  
Sbjct: 81  LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGA 135

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 9/119 (7%)

Query: 124 SIPSEITALSMLQTLELPSSRLTGIIPSEM-GRLRNLVRLDLSDNYIGGYIPP-TLGRLS 181
            IP +I   +    L L  + L  I    + GRL +LV+L+L  N + G I P      S
Sbjct: 22  EIPRDIPLHT--TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGAS 78

Query: 182 KLKILNLSSNFLVGNIPL-TLCHLSKLKILNLSSNSLVGNIPP-TLGHLTQLTTLAMSN 238
            ++ L L  N +   I       L +LK LNL  N +   + P +  HL  LT+L +++
Sbjct: 79  HIQELQLGENKI-KEISNKMFLGLHQLKTLNLYDNQI-SCVMPGSFEHLNSLTSLNLAS 135

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 4/109 (3%)

Query: 132 LSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSN 191
           L+ L  L L  ++L  +      +L NL  L L +N +         +L+ L  LNL+ N
Sbjct: 84  LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143

Query: 192 FLVGNIPLTLC-HLSKLKILNLSSNSLVGNIPP-TLGHLTQLTTLAMSN 238
            L  ++P  +   L+ L  L+LS N L  ++P      LTQL  L +  
Sbjct: 144 QLQ-SLPKGVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQ 190

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 12/118 (10%)

Query: 124 SIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKL 183
             P +  A        L    +T  +      L ++ ++  +++ I       +  L  +
Sbjct: 12  IFPDDAFA--ETIKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS--VQGIQYLPNV 65

Query: 184 KILNLSSNFLVGNIPLTLCH-LSKLKILNLSSNSLVGNIPPTLGH-LTQLTTLAMSNK 239
           + L L  N L     ++    L+ L  L L+ N L  ++P  +   LT L  L +   
Sbjct: 66  RYLALGGNKLH---DISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVEN 119

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 5/111 (4%)

Query: 109 NLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDN 167
           NL    +  N L   S+P+ +   L+ L+ L L  ++L  +      +L NL  L+L+ N
Sbjct: 86  NLTYLILTGNQL--QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143

Query: 168 YIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLC-HLSKLKILNLSSNSL 217
            +         +L+ L  L+LS N L  ++P  +   L++LK L L  N L
Sbjct: 144 QLQSLPKGVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQL 193

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 22/126 (17%)

Query: 135 LQTLELPSSRLTG----IIPSEMGRLRNLVRLDLSDNYIGG----YIPPTLGRLSKLKIL 186
           ++   L    +T      + + +    ++  + LS N IG     ++   +     L+I 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 187 NLSSNFL----------VGNIPLTLCHLSKLKILNLSSNSL----VGNIPPTLGHLTQLT 232
             S  F           +  +   L    KL  + LS N+        +   L   T L 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 233 TLAMSN 238
            L + N
Sbjct: 126 HLYLHN 131

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 20/129 (15%)

Query: 108 PNLKSFKIHSNYLLSGSIPSEITALSM---LQTLELPSSRLT-----GIIPSEMGRLRNL 159
           P L+S     N L +GS+            L T+++  + +       ++   +   + L
Sbjct: 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218

Query: 160 VRLDLSDNYIGG----YIPPTLGRLSKLKILNLSSNFLVGNI-------PLTLCHLSKLK 208
             LDL DN         +   L     L+ L L+   L+            +      L+
Sbjct: 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQ 277

Query: 209 ILNLSSNSL 217
            L L  N +
Sbjct: 278 TLRLQYNEI 286

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 13/122 (10%)

Query: 109 NLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLT----GIIPSEMGRLRNLVRLDL 164
           +++S  I    L        +  L   Q + L    LT      I S +     L  L+L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 165 SDNYIGG----YIPPTLGRLS-KLKILNLSSNFL----VGNIPLTLCHLSKLKILNLSSN 215
             N +G      +   L   S K++ L+L +  L     G +  TL  L  L+ L+LS N
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 216 SL 217
            L
Sbjct: 124 LL 125

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 6/95 (6%)

Query: 150 PSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPL----TLCHLS 205
           P+       +  +D +D+ I       +  L  ++ + L     + +  L     L +L 
Sbjct: 54  PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQ 113

Query: 206 K-LKILNLSSNSLVGNI-PPTLGHLTQLTTLAMSN 238
           K +  + + S   V +     L H   L  L +S+
Sbjct: 114 KSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSD 148

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 35/196 (17%), Positives = 72/196 (36%), Gaps = 14/196 (7%)

Query: 54  WYDNWATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSF 113
           WY   +    + +       +  +  G ++   ++ +       +           ++  
Sbjct: 39  WYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHM 98

Query: 114 KIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSD-NYIGGY 172
            + ++ +   ++   ++  S LQ L L   RL+  I + + +  NLVRL+LS  +    +
Sbjct: 99  DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF 158

Query: 173 IPPTLGR-LSKLKILNLSSNFLVGNIPLTLC---HLSKLKILNLS------SNSLVGNIP 222
              TL    S+L  LNLS  F      + +        +  LNLS        S +  + 
Sbjct: 159 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL- 217

Query: 223 PTLGHLTQLTTLAMSN 238
             +     L  L +S+
Sbjct: 218 --VRRCPNLVHLDLSD 231

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 4/116 (3%)

Query: 124 SIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKL 183
           S+P+ I + +    LEL S++L  +      +L  L +L LS N I         +L+KL
Sbjct: 21  SVPTGIPSSA--TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL 78

Query: 184 KILNLSSNFLVGNIPLTLC-HLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
            IL L  N L  ++P  +   L++LK L L +N L          LT L  + +  
Sbjct: 79  TILYLHENKL-QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	242
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.9
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.89
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.88
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.87
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.87
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.87
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.86
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.86
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.86
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.86
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.85
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.85
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.84
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.84
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.84
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.84
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.84
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.83
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.83
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.83
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.83
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.83
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.82
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.82
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.82
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.82
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.82
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.82
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.81
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.81
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.81
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.81
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.81
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.81
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.81
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.81
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.81
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.8
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.8
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.8
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.79
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.79
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.79
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.79
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.79
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.79
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.79
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.78
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.78
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.78
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.77
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.77
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.77
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.76
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.76
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.75
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.75
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.75
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.75
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.75
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.74
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.73
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.73
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.73
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.72
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.72
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.72
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.7
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.7
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.7
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.69
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.69
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.69
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.69
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.68
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.68
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.67
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.66
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.64
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.64
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.63
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.62
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.6
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.6
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.59
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.59
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.59
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.59
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.58
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.57
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.54
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.54
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.52
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.47
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.46
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.37
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.31
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.26
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.22
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.17
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.1
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	99.09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.07
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.94
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.85
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.83
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.8
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.76
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.75
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.46
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.4
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.14
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.02
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.0
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.86
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.78
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.78
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.72
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.4
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.3
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.21

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=6.6e-32  Score=226.39  Aligned_cols=190  Identities=28%  Similarity=0.504  Sum_probs=159.0

Q ss_pred             CCcHHHHHHHHh----------cCCCCCCCCCCCCCCCCCCc--ccceEeCCC---CCeEEEEecccCCCCcee--eeCC
Q 026163           39 SPVQLEREALLI----------TGWWYDNWATSGNYTSDHCK--WTGIRCNSA---GSVIRVSLLWYENDNMKG--ELGR  101 (242)
Q Consensus        39 ~~~~~~~~~l~~----------~~~w~~~~~~~~~~~~~~C~--w~gv~c~~~---~~v~~L~l~~~~~~~~~~--~i~~  101 (242)
                      .|.++|++||++          +++|..        +.++|.  |.||+|+..   ++|+.|+++++   ++.+  .+ +
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~--------~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~---~l~~~~~~-~   69 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPTTLSSWLP--------TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL---NLPKPYPI-P   69 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCGGGTTCCT--------TSCTTTTCSTTEEECCSSSCCCEEEEEEECC---CCSSCEEC-C
T ss_pred             CCCHHHHHHHHHHHHhcCCcccccCCCC--------CCCCCcCCCcceEeCCCCCCceEEEEECCCC---CccCCccc-C
Confidence            588999999987          223422        467898  999999754   79999999998   8888  77 7


Q ss_pred             CCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCC
Q 026163          102 FNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLS  181 (242)
Q Consensus       102 ~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  181 (242)
                      ..+..+++|++|++++++.+.+.+|..+.++++|++|++++|++++.+|..+.++++|++|++++|++++.+|..+..++
T Consensus        70 ~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  149 (313)
T 1ogq_A           70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP  149 (313)
T ss_dssp             GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred             hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence            88999999999999953445678898999999999999999999988999999999999999999999988999999999


Q ss_pred             CCCEEEeecCCCccccccccCCCC-CCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163          182 KLKILNLSSNFLVGNIPLTLCHLS-KLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       182 ~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l  241 (242)
                      +|++|++++|++++.+|..+..++ +|++|++++|.+++.+|..+..++ |++|++++|++
T Consensus       150 ~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l  209 (313)
T 1ogq_A          150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML  209 (313)
T ss_dssp             TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred             CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence            999999999999988888888887 888888888888776666666655 66666666654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.95  E-value=3.1e-28  Score=222.12  Aligned_cols=192  Identities=19%  Similarity=0.301  Sum_probs=168.1

Q ss_pred             cHHHHHHHHh------cCCCCC---------CCCCCCCCCCCCCcc---cceEeCCCCCeEEEEecccCCCCceeeeCCC
Q 026163           41 VQLEREALLI------TGWWYD---------NWATSGNYTSDHCKW---TGIRCNSAGSVIRVSLLWYENDNMKGELGRF  102 (242)
Q Consensus        41 ~~~~~~~l~~------~~~w~~---------~~~~~~~~~~~~C~w---~gv~c~~~~~v~~L~l~~~~~~~~~~~i~~~  102 (242)
                      ...|+.||.+      ...|..         .|.    .+.++|.|   .||+|+..++|+.|+++++   ++.|.+ ++
T Consensus        28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~----~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~---~l~g~l-p~   99 (636)
T 4eco_A           28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN----FNKELDMWGAQPGVSLNSNGRVTGLSLEGF---GASGRV-PD   99 (636)
T ss_dssp             HHHHHHHHHHHHHHTTGGGCCCCC------CCCC----CSSCGGGTTCCTTEEECTTCCEEEEECTTS---CCEEEE-CG
T ss_pred             HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC----CCCCcccccCCCCeEEcCCCCEEEEEecCc---ccCCcC-Ch
Confidence            4568888887      234541         232    25689999   9999987899999999999   999999 78


Q ss_pred             CcCCCCCCCEEEecCCCc--------------------------------------------------------------
Q 026163          103 NFSCFPNLKSFKIHSNYL--------------------------------------------------------------  120 (242)
Q Consensus       103 ~~~~l~~L~~L~l~~~~~--------------------------------------------------------------  120 (242)
                      .++.+++|++|++++|+.                                                              
T Consensus       100 ~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  179 (636)
T 4eco_A          100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS  179 (636)
T ss_dssp             GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCC
T ss_pred             HHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccc
Confidence            999999999999987632                                                              


Q ss_pred             ---------------ccccCchhhhcCCCCCEEeccCccCCCC-----------------CChhcc--CCcCCcEEEccc
Q 026163          121 ---------------LSGSIPSEITALSMLQTLELPSSRLTGI-----------------IPSEMG--RLRNLVRLDLSD  166 (242)
Q Consensus       121 ---------------~~~~~p~~~~~l~~L~~L~l~~n~l~~~-----------------~p~~~~--~l~~L~~L~Ls~  166 (242)
                                     +++ +|..+.++++|++|++++|++++.                 +|..++  ++++|++|++++
T Consensus       180 ~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~  258 (636)
T 4eco_A          180 RITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN  258 (636)
T ss_dssp             CCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEEC
T ss_pred             ccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecC
Confidence                           334 788899999999999999999985                 899998  999999999999


Q ss_pred             CcCCCCCCcCcCCCCCCCEEEeecCC-Ccc-ccccccCCC------CCCcEEEcccCCCCCCCcc--cccCCcCCCEEeC
Q 026163          167 NYIGGYIPPTLGRLSKLKILNLSSNF-LVG-NIPLTLCHL------SKLKILNLSSNSLVGNIPP--TLGHLTQLTTLAM  236 (242)
Q Consensus       167 N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~-~~p~~l~~l------~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~l  236 (242)
                      |++.+.+|..+.++++|++|++++|+ +++ .+|..++.+      ++|++|++++|.++ .+|.  .++++++|++|++
T Consensus       259 n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L  337 (636)
T 4eco_A          259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLEC  337 (636)
T ss_dssp             CTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEEC
T ss_pred             CcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeC
Confidence            99999999999999999999999998 998 889888776      89999999999999 7888  8999999999999


Q ss_pred             cCCCCC
Q 026163          237 SNKVAI  242 (242)
Q Consensus       237 s~N~lt  242 (242)
                      ++|+++
T Consensus       338 ~~N~l~  343 (636)
T 4eco_A          338 LYNQLE  343 (636)
T ss_dssp             CSCCCE
T ss_pred             cCCcCc
Confidence            999874

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=1.6e-27  Score=221.62  Aligned_cols=199  Identities=26%  Similarity=0.309  Sum_probs=139.7

Q ss_pred             CCCCcHHHHHHHHh-cCCCCCCCCCCCC-CCCCCCcccceEeCCCCCeEEEEecccCCCCceee---eC-----------
Q 026163           37 LSSPVQLEREALLI-TGWWYDNWATSGN-YTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGE---LG-----------  100 (242)
Q Consensus        37 ~~~~~~~~~~~l~~-~~~w~~~~~~~~~-~~~~~C~w~gv~c~~~~~v~~L~l~~~~~~~~~~~---i~-----------  100 (242)
                      +..+.+.|++||++ .+++.+.....+| .+.+||.|.||+|+ .++|+.|++++.   ++.|.   ++           
T Consensus         6 ~~~~~~~~~~all~~k~~~~~~~~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~---~l~g~~~~l~~~l~~L~~L~~   81 (768)
T 3rgz_A            6 PSQSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSK---PLNVGFSAVSSSLLSLTGLES   81 (768)
T ss_dssp             --CCHHHHHHHHHHHHTTCSCTTSSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTS---CCCEEHHHHHHHTTTCTTCCE
T ss_pred             cccCCHHHHHHHHHHHhhCCCcccccCCCCCCCCcCCcceEEC-CCcEEEEECCCC---CcCCccCccChhHhccCcccc
Confidence            33446789999987 1222110011112 25689999999998 789999999988   66665   32           


Q ss_pred             -----------CCCcCCCCCCCEEEecCCCcccccCch--hhhcCCCCCEEeccCccCCCCCChhc-cCCcCCcEEEccc
Q 026163          101 -----------RFNFSCFPNLKSFKIHSNYLLSGSIPS--EITALSMLQTLELPSSRLTGIIPSEM-GRLRNLVRLDLSD  166 (242)
Q Consensus       101 -----------~~~~~~l~~L~~L~l~~~~~~~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~Ls~  166 (242)
                                 +..+..+++|++|++++|. +.+.+|.  .+.++++|++|++++|.+++..|..+ .++++|++|++++
T Consensus        82 l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~  160 (768)
T 3rgz_A           82 LFLSNSHINGSVSGFKCSASLTSLDLSRNS-LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA  160 (768)
T ss_dssp             EECTTSCEEECCCCCCCCTTCCEEECCSSE-EEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred             cCCcCCCcCCCchhhccCCCCCEEECCCCc-CCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence                       2578888999999999554 5567777  78889999999999998887777655 6677777777777


Q ss_pred             CcCCCCCCcC---c----------------------CCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCC
Q 026163          167 NYIGGYIPPT---L----------------------GRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNI  221 (242)
Q Consensus       167 N~l~~~~p~~---~----------------------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~  221 (242)
                      |++++..|..   +                      ..+++|++|++++|.+++.+|. ++++++|++|++++|.+++.+
T Consensus       161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~  239 (768)
T 3rgz_A          161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF  239 (768)
T ss_dssp             SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCH
T ss_pred             CccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcc
Confidence            7766544433   2                      4556666666666666665554 777777777777777777777


Q ss_pred             cccccCCcCCCEEeCcCCCC
Q 026163          222 PPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       222 p~~l~~l~~L~~L~ls~N~l  241 (242)
                      |..++.+++|++|++++|++
T Consensus       240 ~~~l~~l~~L~~L~Ls~n~l  259 (768)
T 3rgz_A          240 SRAISTCTELKLLNISSNQF  259 (768)
T ss_dssp             HHHTTTCSSCCEEECCSSCC
T ss_pred             cHHHhcCCCCCEEECCCCcc
Confidence            77777777777777777765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=1.4e-27  Score=223.42  Aligned_cols=202  Identities=20%  Similarity=0.275  Sum_probs=164.4

Q ss_pred             cCCCCcHHHHHHHHhc-CCC-CCCCCCCC-CCCCCC--Ccc------------cceEeCCCCCeEEEEecccCCCCceee
Q 026163           36 LLSSPVQLEREALLIT-GWW-YDNWATSG-NYTSDH--CKW------------TGIRCNSAGSVIRVSLLWYENDNMKGE   98 (242)
Q Consensus        36 ~~~~~~~~~~~~l~~~-~~w-~~~~~~~~-~~~~~~--C~w------------~gv~c~~~~~v~~L~l~~~~~~~~~~~   98 (242)
                      ....+...|+.||++. ..| .+.|.... +...++  |.|            .||+|+..++|+.|+|+++   ++.|.
T Consensus       262 ~~~~~~~~d~~ALl~~k~~l~~~~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~---~L~G~  338 (876)
T 4ecn_A          262 KETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGF---GAKGR  338 (876)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTGGGCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTT---CCEEE
T ss_pred             cccccchHHHHHHHHHHHHcCCCCCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccC---CCCCc
Confidence            3344567899999871 111 11233332 112344  999            9999988899999999999   99999


Q ss_pred             eCCCCcCCCCCCCEEEecCCCccccc------------------------------------------------------
Q 026163           99 LGRFNFSCFPNLKSFKIHSNYLLSGS------------------------------------------------------  124 (242)
Q Consensus        99 i~~~~~~~l~~L~~L~l~~~~~~~~~------------------------------------------------------  124 (242)
                      + ++.++.+++|++|+++.+|.+.|.                                                      
T Consensus       339 i-p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i  417 (876)
T 4ecn_A          339 V-PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI  417 (876)
T ss_dssp             E-CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCC
T ss_pred             C-chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccc
Confidence            9 789999999999999323322222                                                      


Q ss_pred             ----------------------CchhhhcCCCCCEEeccCccCCC-----------------CCChhcc--CCcCCcEEE
Q 026163          125 ----------------------IPSEITALSMLQTLELPSSRLTG-----------------IIPSEMG--RLRNLVRLD  163 (242)
Q Consensus       125 ----------------------~p~~~~~l~~L~~L~l~~n~l~~-----------------~~p~~~~--~l~~L~~L~  163 (242)
                                            +|..+.++++|++|++++|++++                 .+|..++  ++++|++|+
T Consensus       418 ~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~  497 (876)
T 4ecn_A          418 KKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE  497 (876)
T ss_dssp             CCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred             ccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence                                  78889999999999999999998                 3888887  999999999


Q ss_pred             cccCcCCCCCCcCcCCCCCCCEEEeecCC-Ccc-ccccccCCC-------CCCcEEEcccCCCCCCCcc--cccCCcCCC
Q 026163          164 LSDNYIGGYIPPTLGRLSKLKILNLSSNF-LVG-NIPLTLCHL-------SKLKILNLSSNSLVGNIPP--TLGHLTQLT  232 (242)
Q Consensus       164 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~-~~p~~l~~l-------~~L~~L~L~~N~l~~~~p~--~l~~l~~L~  232 (242)
                      +++|.+.+.+|..+.++++|++|++++|+ +++ .+|..++.+       ++|++|++++|.++ .+|.  .++++++|+
T Consensus       498 Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~  576 (876)
T 4ecn_A          498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLG  576 (876)
T ss_dssp             EESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCC
T ss_pred             CcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCC
Confidence            99999999999999999999999999998 988 788765544       49999999999998 7887  889999999


Q ss_pred             EEeCcCCCCC
Q 026163          233 TLAMSNKVAI  242 (242)
Q Consensus       233 ~L~ls~N~lt  242 (242)
                      +|++++|+++
T Consensus       577 ~L~Ls~N~l~  586 (876)
T 4ecn_A          577 LLDCVHNKVR  586 (876)
T ss_dssp             EEECTTSCCC
T ss_pred             EEECCCCCcc
Confidence            9999999874

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=6.6e-27  Score=197.25  Aligned_cols=193  Identities=19%  Similarity=0.306  Sum_probs=113.4

Q ss_pred             CCCcHHHHHHHHh--------cCCCCCCCCCCCCCCCCCCcccceEeC---------CCCCeEEEEecccCCCCceeeeC
Q 026163           38 SSPVQLEREALLI--------TGWWYDNWATSGNYTSDHCKWTGIRCN---------SAGSVIRVSLLWYENDNMKGELG  100 (242)
Q Consensus        38 ~~~~~~~~~~l~~--------~~~w~~~~~~~~~~~~~~C~w~gv~c~---------~~~~v~~L~l~~~~~~~~~~~i~  100 (242)
                      ..+..+|+.||+.        ...|...|........++|.|.|+.|+         ...+++.|+++++   ++. .+ 
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n---~l~-~l-   96 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV---PLP-QF-   96 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS---CCS-SC-
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC---Cch-hc-
Confidence            4455678888876        223544453222346788999999994         3478888998887   554 45 


Q ss_pred             CCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCC-
Q 026163          101 RFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGR-  179 (242)
Q Consensus       101 ~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-  179 (242)
                      +..+..+++|++|++++|.+ . .+|..+..+++|++|++++|+++ .+|..+.++++|++|++++|++.+.+|..+.. 
T Consensus        97 p~~l~~l~~L~~L~L~~n~l-~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~  173 (328)
T 4fcg_A           97 PDQAFRLSHLQHMTIDAAGL-M-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST  173 (328)
T ss_dssp             CSCGGGGTTCSEEEEESSCC-C-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE
T ss_pred             ChhhhhCCCCCEEECCCCCc-c-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc
Confidence            45566677777777775544 2 56666666666777777766666 55666666666666666666555555554432 


Q ss_pred             --------CCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCC
Q 026163          180 --------LSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKV  240 (242)
Q Consensus       180 --------l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~  240 (242)
                              +++|++|++++|+++ .+|..++.+++|++|++++|.+++ +|..+..+++|++|++++|+
T Consensus       174 ~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~  240 (328)
T 4fcg_A          174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCT  240 (328)
T ss_dssp             C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCT
T ss_pred             cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCc
Confidence                    555555555555555 444444444555555555554442 33334444444444444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.92  E-value=3.4e-24  Score=173.85  Aligned_cols=158  Identities=22%  Similarity=0.226  Sum_probs=139.5

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL  159 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  159 (242)
                      ..++.|+++++   .+.+.. +..+..+++|++|++++|. +++..+..+..+++|++|++++|++++..+..+..+++|
T Consensus        35 ~~l~~L~L~~n---~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  109 (251)
T 3m19_A           35 ADTEKLDLQST---GLATLS-DATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL  109 (251)
T ss_dssp             TTCCEEECTTS---CCCCCC-TTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             CCCCEEEccCC---CcCccC-HhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC
Confidence            46889999888   777655 6789999999999999665 455556668999999999999999997777888999999


Q ss_pred             cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCC
Q 026163          160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNK  239 (242)
Q Consensus       160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N  239 (242)
                      ++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus       110 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          110 DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence            99999999999777777899999999999999999776768999999999999999999877778999999999999999


Q ss_pred             CCC
Q 026163          240 VAI  242 (242)
Q Consensus       240 ~lt  242 (242)
                      +++
T Consensus       190 ~~~  192 (251)
T 3m19_A          190 QFD  192 (251)
T ss_dssp             CBC
T ss_pred             cee
Confidence            874

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=9e-24  Score=173.18  Aligned_cols=155  Identities=25%  Similarity=0.301  Sum_probs=98.3

Q ss_pred             CeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCch-hhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163           81 SVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPS-EITALSMLQTLELPSSRLTGIIPSEMGRLRNL  159 (242)
Q Consensus        81 ~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  159 (242)
                      .++.|+++++   .+.+ +++..|..+++|++|++++|.+ + .+|. .|..+++|++|++++|++++..+..+..+++|
T Consensus        38 ~l~~L~l~~n---~l~~-~~~~~~~~l~~L~~L~l~~n~l-~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  111 (270)
T 2o6q_A           38 DTKKLDLQSN---KLSS-LPSKAFHRLTKLRLLYLNDNKL-Q-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL  111 (270)
T ss_dssp             TCSEEECCSS---CCSC-CCTTSSSSCTTCCEEECCSSCC-S-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSC
T ss_pred             CCCEEECcCC---CCCe-eCHHHhcCCCCCCEEECCCCcc-C-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCC
Confidence            4566666665   4443 3255677788888888876554 2 3443 35667777777777777775555556667777


Q ss_pred             cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCC
Q 026163          160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNK  239 (242)
Q Consensus       160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N  239 (242)
                      ++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus       112 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (270)
T 2o6q_A          112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN  191 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC
Confidence            77777777776555555666666666666666666544444566666666666666666544445556666666666666


Q ss_pred             CC
Q 026163          240 VA  241 (242)
Q Consensus       240 ~l  241 (242)
                      ++
T Consensus       192 ~l  193 (270)
T 2o6q_A          192 QL  193 (270)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.90  E-value=8.6e-23  Score=163.56  Aligned_cols=158  Identities=23%  Similarity=0.265  Sum_probs=121.2

Q ss_pred             CCCCCcccceEeCCCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCcc
Q 026163           65 TSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSR  144 (242)
Q Consensus        65 ~~~~C~w~gv~c~~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~  144 (242)
                      +...|+|.+|.|+..+               .+.+ +..+  .++|++|++++|+ +++..|..+..+++|++|++++|+
T Consensus        15 ~~~~Cs~~~v~c~~~~---------------l~~i-p~~~--~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~   75 (229)
T 3e6j_A           15 SQCSCSGTTVDCRSKR---------------HASV-PAGI--PTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQ   75 (229)
T ss_dssp             TTCEEETTEEECTTSC---------------CSSC-CSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCEEeCCEeEccCCC---------------cCcc-CCCC--CCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCC
Confidence            5678999999996321               1222 2222  2778888888555 445556778888888888888888


Q ss_pred             CCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCccc
Q 026163          145 LTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPT  224 (242)
Q Consensus       145 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~  224 (242)
                      ++...+..|..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..
T Consensus        76 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~  154 (229)
T 3e6j_A           76 LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA  154 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred             CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHH
Confidence            87655566788888888888888888666666788888888888888888 67778888888888888888888666667


Q ss_pred             ccCCcCCCEEeCcCCCCC
Q 026163          225 LGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       225 l~~l~~L~~L~ls~N~lt  242 (242)
                      +..+++|++|++++|+++
T Consensus       155 ~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          155 FDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             TTTCTTCCEEECTTSCBC
T ss_pred             HhCCCCCCEEEeeCCCcc
Confidence            888888888888888763

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.89  E-value=2.4e-23  Score=193.61  Aligned_cols=157  Identities=36%  Similarity=0.516  Sum_probs=109.7

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhc------
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEM------  153 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~------  153 (242)
                      .+++.|+++++   .+.+.+ +..+..+++|++|++++| .+.+.+|..+..+++|++|++++|.+++.+|..+      
T Consensus       490 ~~L~~L~L~~N---~l~~~~-p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~  564 (768)
T 3rgz_A          490 TNLNWISLSNN---RLTGEI-PKWIGRLENLAILKLSNN-SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK  564 (768)
T ss_dssp             TTCCEEECCSS---CCCSCC-CGGGGGCTTCCEEECCSS-CCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTC
T ss_pred             CCCCEEEccCC---ccCCcC-ChHHhcCCCCCEEECCCC-cccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccch
Confidence            34555565555   555555 555666666666666643 3345666666666777777777766665555432      


Q ss_pred             ----------------------------------------------------------------cCCcCCcEEEcccCcC
Q 026163          154 ----------------------------------------------------------------GRLRNLVRLDLSDNYI  169 (242)
Q Consensus       154 ----------------------------------------------------------------~~l~~L~~L~Ls~N~l  169 (242)
                                                                                      ..+++|++|++++|++
T Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l  644 (768)
T 3rgz_A          565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML  644 (768)
T ss_dssp             BCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC
T ss_pred             hhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcc
Confidence                                                                            2245677777777777


Q ss_pred             CCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163          170 GGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       170 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l  241 (242)
                      +|.+|..++++++|+.|+|++|+++|.+|..++.+++|++|++++|+++|.+|..+.++++|++|++++|++
T Consensus       645 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l  716 (768)
T 3rgz_A          645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL  716 (768)
T ss_dssp             BSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred             cccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence            777777777788888888888888877888888888888888888888888888888888888888888865

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.89  E-value=3.5e-22  Score=164.72  Aligned_cols=157  Identities=22%  Similarity=0.185  Sum_probs=78.1

Q ss_pred             CeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCc
Q 026163           81 SVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLV  160 (242)
Q Consensus        81 ~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~  160 (242)
                      +++.|+++++   .+.+.. +..+..+++|++|++++|..+....|..+..+++|++|++++|++++..|..+.++++|+
T Consensus        57 ~L~~L~l~~n---~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  132 (285)
T 1ozn_A           57 NLTILWLHSN---VLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ  132 (285)
T ss_dssp             TCCEEECCSS---CCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             CCCEEECCCC---ccceeC-HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCC
Confidence            4555555544   443332 445555555555555544323322244455555555555555555544444555555555


Q ss_pred             EEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCC
Q 026163          161 RLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKV  240 (242)
Q Consensus       161 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~  240 (242)
                      +|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|+
T Consensus       133 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  212 (285)
T 1ozn_A          133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN  212 (285)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc
Confidence            55555555554444445555555555555555554333334445555555555555554444444455555555555554


Q ss_pred             C
Q 026163          241 A  241 (242)
Q Consensus       241 l  241 (242)
                      +
T Consensus       213 l  213 (285)
T 1ozn_A          213 L  213 (285)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=1.9e-23  Score=174.87  Aligned_cols=157  Identities=25%  Similarity=0.402  Sum_probs=120.1

Q ss_pred             CCCeEEEEecc-cCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCc
Q 026163           79 AGSVIRVSLLW-YENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLR  157 (242)
Q Consensus        79 ~~~v~~L~l~~-~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~  157 (242)
                      ..+++.|++++ +   .+.+.+ +..+..+++|++|++++|+ +++.+|..+.++++|++|++++|++++.+|..+..++
T Consensus        75 l~~L~~L~L~~~n---~l~~~~-p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  149 (313)
T 1ogq_A           75 LPYLNFLYIGGIN---NLVGPI-PPAIAKLTQLHYLYITHTN-VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP  149 (313)
T ss_dssp             CTTCSEEEEEEET---TEESCC-CGGGGGCTTCSEEEEEEEC-CEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred             CCCCCeeeCCCCC---cccccC-ChhHhcCCCCCEEECcCCe-eCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence            45788888884 6   777777 6778888888888888554 4457788888888888888888888888888888888


Q ss_pred             CCcEEEcccCcCCCCCCcCcCCCC-CCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeC
Q 026163          158 NLVRLDLSDNYIGGYIPPTLGRLS-KLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAM  236 (242)
Q Consensus       158 ~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l  236 (242)
                      +|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |++|++++|.+++.+|..+..+++|++|++
T Consensus       150 ~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  228 (313)
T 1ogq_A          150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHL  228 (313)
T ss_dssp             TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEEC
T ss_pred             CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEEC
Confidence            888888888888877888888877 788888888888777776666665 777777777666666666666666666666


Q ss_pred             cCCCC
Q 026163          237 SNKVA  241 (242)
Q Consensus       237 s~N~l  241 (242)
                      ++|++
T Consensus       229 ~~N~l  233 (313)
T 1ogq_A          229 AKNSL  233 (313)
T ss_dssp             CSSEE
T ss_pred             CCCce
Confidence            66654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.88  E-value=7.8e-22  Score=162.65  Aligned_cols=159  Identities=23%  Similarity=0.227  Sum_probs=140.6

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCcc-CCCCCChhccCCc
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSR-LTGIIPSEMGRLR  157 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~  157 (242)
                      ..+++.|+++++   .+.+.. +..+..+++|++|++++|. +++..|..+..+++|++|++++|. ++...|..+..++
T Consensus        31 ~~~l~~L~l~~n---~i~~~~-~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~  105 (285)
T 1ozn_A           31 PAASQRIFLHGN---RISHVP-AASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG  105 (285)
T ss_dssp             CTTCSEEECTTS---CCCEEC-TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT
T ss_pred             CCCceEEEeeCC---cCCccC-HHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCc
Confidence            457899999998   776644 6789999999999999665 455557789999999999999997 8766688899999


Q ss_pred             CCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCc
Q 026163          158 NLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMS  237 (242)
Q Consensus       158 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls  237 (242)
                      +|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus       106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  185 (285)
T 1ozn_A          106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH  185 (285)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECC
Confidence            99999999999998888889999999999999999997767779999999999999999997666779999999999999


Q ss_pred             CCCCC
Q 026163          238 NKVAI  242 (242)
Q Consensus       238 ~N~lt  242 (242)
                      +|+++
T Consensus       186 ~n~l~  190 (285)
T 1ozn_A          186 QNRVA  190 (285)
T ss_dssp             SSCCC
T ss_pred             CCccc
Confidence            99874

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=1e-21  Score=161.10  Aligned_cols=157  Identities=22%  Similarity=0.186  Sum_probs=137.5

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN  158 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  158 (242)
                      ..+++.|+++++   .+.+   ...+..+++|++|++++|.+ ++..+..+..+++|++|++++|++++..+..+..+++
T Consensus        62 l~~L~~L~l~~n---~l~~---~~~l~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  134 (272)
T 3rfs_A           62 LPNVRYLALGGN---KLHD---ISALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN  134 (272)
T ss_dssp             CTTCCEEECTTS---CCCC---CGGGTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             CCCCcEEECCCC---CCCC---chhhcCCCCCCEEECCCCcc-CccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCC
Confidence            467999999988   6665   24788999999999996654 4455555789999999999999999777777899999


Q ss_pred             CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163          159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN  238 (242)
Q Consensus       159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~  238 (242)
                      |++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus       135 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  214 (272)
T 3rfs_A          135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD  214 (272)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccC
Confidence            99999999999977777789999999999999999987777789999999999999999987778889999999999999


Q ss_pred             CCCC
Q 026163          239 KVAI  242 (242)
Q Consensus       239 N~lt  242 (242)
                      |+++
T Consensus       215 N~~~  218 (272)
T 3rfs_A          215 NPWD  218 (272)
T ss_dssp             SCBC
T ss_pred             CCcc
Confidence            9874

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=3.8e-22  Score=168.07  Aligned_cols=154  Identities=25%  Similarity=0.309  Sum_probs=82.3

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccC----
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGR----  155 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~----  155 (242)
                      .+++.|+++++   .+. .+ +..+..+++|++|++++|.+ . .+|..+.++++|++|++++|++.+.+|..+..    
T Consensus       104 ~~L~~L~L~~n---~l~-~l-p~~~~~l~~L~~L~Ls~n~l-~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~  176 (328)
T 4fcg_A          104 SHLQHMTIDAA---GLM-EL-PDTMQQFAGLETLTLARNPL-R-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS  176 (328)
T ss_dssp             TTCSEEEEESS---CCC-CC-CSCGGGGTTCSEEEEESCCC-C-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred             CCCCEEECCCC---Ccc-ch-hHHHhccCCCCEEECCCCcc-c-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccch
Confidence            35666666665   544 44 45556666666666665443 2 45555666666666666665555555544332    


Q ss_pred             -----CcCCcEEEcccCcCCCCCCcC-----------------------cCCCCCCCEEEeecCCCccccccccCCCCCC
Q 026163          156 -----LRNLVRLDLSDNYIGGYIPPT-----------------------LGRLSKLKILNLSSNFLVGNIPLTLCHLSKL  207 (242)
Q Consensus       156 -----l~~L~~L~Ls~N~l~~~~p~~-----------------------~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  207 (242)
                           +++|++|++++|+++ .+|..                       +..+++|++|++++|.+.+.+|..++.+++|
T Consensus       177 ~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L  255 (328)
T 4fcg_A          177 GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL  255 (328)
T ss_dssp             CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred             hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence                 445555555555444 44444                       4444555555555555544555555555555


Q ss_pred             cEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163          208 KILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       208 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l  241 (242)
                      ++|++++|.+.+.+|..+.++++|++|++++|++
T Consensus       256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN  289 (328)
T ss_dssp             CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred             CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence            5555555555555555555555555555555543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.88  E-value=7.5e-22  Score=157.16  Aligned_cols=133  Identities=20%  Similarity=0.260  Sum_probs=109.8

Q ss_pred             CCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEE
Q 026163          108 PNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILN  187 (242)
Q Consensus       108 ~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  187 (242)
                      +++++|++++|++ ++..+..|..+++|++|++++|++++..|..|.++++|++|++++|+++...+..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i-~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           32 ETITEIRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             TTCCEEECCSSCC-CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcC-CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence            6788889986654 334444678888899999999998877788888889999999999998865555678888999999


Q ss_pred             eecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163          188 LSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       188 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l  241 (242)
                      +++|++++..|..|..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus       111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            999998887788888888999999999998877667788888899999998876

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.87  E-value=9.2e-22  Score=156.66  Aligned_cols=133  Identities=18%  Similarity=0.215  Sum_probs=109.8

Q ss_pred             CCCCEEEecCCCcccccCc-hhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEE
Q 026163          108 PNLKSFKIHSNYLLSGSIP-SEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKIL  186 (242)
Q Consensus       108 ~~L~~L~l~~~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  186 (242)
                      +.+++|++++|++ ++..+ ..|..+++|++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|++|
T Consensus        32 ~~~~~L~L~~N~l-~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  110 (220)
T 2v70_A           32 QYTAELRLNNNEF-TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL  110 (220)
T ss_dssp             TTCSEEECCSSCC-CEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred             CCCCEEEcCCCcC-CccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence            4568888886654 33323 347888899999999999887777788888999999999999887777778888899999


Q ss_pred             EeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163          187 NLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       187 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l  241 (242)
                      ++++|++++..|..|..+++|++|++++|.+++..|..+..+++|++|++++|++
T Consensus       111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            9999999887788888888999999999998877788888888999999998876

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.87  E-value=6.4e-22  Score=168.02  Aligned_cols=171  Identities=21%  Similarity=0.261  Sum_probs=139.4

Q ss_pred             CCCCcccceEeC------------CCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCC
Q 026163           66 SDHCKWTGIRCN------------SAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALS  133 (242)
Q Consensus        66 ~~~C~w~gv~c~------------~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~  133 (242)
                      ...|.|.++ |+            ...+++.|+++++   .+.+ +++..+..+++|++|++++|++ ++..|..+.+++
T Consensus        27 ~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n---~i~~-~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~  100 (353)
T 2z80_A           27 SLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNN---RITY-ISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLG  100 (353)
T ss_dssp             CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTS---CCCE-ECTTTTTTCTTCCEEECTTSCC-CEECTTTTTTCT
T ss_pred             CCCCCCCeE-eeCCCCCcccccccccccCcEEECCCC---cCcc-cCHHHhccCCCCCEEECCCCcc-CccCHhhcCCCC
Confidence            445677666 53            1247899999988   7665 4366899999999999996654 455566789999


Q ss_pred             CCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCC-cCcCCCCCCCEEEeecC-CCccccccccCCCCCCcEEE
Q 026163          134 MLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIP-PTLGRLSKLKILNLSSN-FLVGNIPLTLCHLSKLKILN  211 (242)
Q Consensus       134 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~  211 (242)
                      +|++|++++|++++..+..+.++++|++|++++|++++..+ ..+..+++|++|++++| .+.+..+..+..+++|++|+
T Consensus       101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  180 (353)
T 2z80_A          101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE  180 (353)
T ss_dssp             TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred             CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence            99999999999996555558999999999999999984433 47889999999999999 47766677899999999999


Q ss_pred             cccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163          212 LSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       212 L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      +++|.+++..|..+..+++|++|++++|+++
T Consensus       181 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          181 IDASDLQSYEPKSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             EEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred             CCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence            9999999888888999999999999888763

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.87  E-value=4e-22  Score=165.92  Aligned_cols=171  Identities=27%  Similarity=0.323  Sum_probs=110.2

Q ss_pred             CCcccceEeCCC----------CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCccc-ccCchhhhcCCCCC
Q 026163           68 HCKWTGIRCNSA----------GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLS-GSIPSEITALSMLQ  136 (242)
Q Consensus        68 ~C~w~gv~c~~~----------~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~-~~~p~~~~~l~~L~  136 (242)
                      .|.|.++.|+..          .+++.|+++++   .+. .++...+..+++|++|++++|.+.. +..+..+..+++|+
T Consensus         6 ~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n---~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~   81 (306)
T 2z66_A            6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESN---KLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK   81 (306)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCCEEECCSS---CCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCC
T ss_pred             eeCCCEEEcCCCCcccCCCCCCCCCCEEECCCC---ccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccC
Confidence            378999999532          37899999987   665 4545668889999999998665421 11244444555555


Q ss_pred             EEeccCccCC-----------------------CCCC-hhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCC
Q 026163          137 TLELPSSRLT-----------------------GIIP-SEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNF  192 (242)
Q Consensus       137 ~L~l~~n~l~-----------------------~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~  192 (242)
                      +|++++|.++                       +..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus        82 ~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  161 (306)
T 2z66_A           82 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS  161 (306)
T ss_dssp             EEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred             EEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence            5555555544                       3222 344555556666666666555555556666666666666666


Q ss_pred             Ccc-ccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163          193 LVG-NIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       193 l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      +++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|+++
T Consensus       162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  212 (306)
T 2z66_A          162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF  212 (306)
T ss_dssp             EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence            664 45666667777777777777777666666777777777777777653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=4e-21  Score=157.36  Aligned_cols=159  Identities=22%  Similarity=0.189  Sum_probs=138.0

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN  158 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  158 (242)
                      ..+++.|+++++   .+. .+++..|..+++|++|++++|.+ .+..+..+..+++|++|++++|++++..+..+..+++
T Consensus        60 l~~L~~L~l~~n---~l~-~i~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  134 (270)
T 2o6q_A           60 LTKLRLLYLNDN---KLQ-TLPAGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK  134 (270)
T ss_dssp             CTTCCEEECCSS---CCS-CCCTTTTSSCTTCCEEECCSSCC-CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCCCCEEECCCC---ccC-eeChhhhcCCCCCCEEECCCCcC-CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC
Confidence            467999999987   665 45466789999999999997665 3333455789999999999999999888888899999


Q ss_pred             CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163          159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN  238 (242)
Q Consensus       159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~  238 (242)
                      |++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus       135 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  214 (270)
T 2o6q_A          135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE  214 (270)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence            99999999999976666789999999999999999977777799999999999999999976667788999999999999


Q ss_pred             CCCC
Q 026163          239 KVAI  242 (242)
Q Consensus       239 N~lt  242 (242)
                      |+++
T Consensus       215 N~~~  218 (270)
T 2o6q_A          215 NPWD  218 (270)
T ss_dssp             SCBC
T ss_pred             CCee
Confidence            9863

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.87  E-value=5.2e-22  Score=173.61  Aligned_cols=159  Identities=19%  Similarity=0.240  Sum_probs=131.2

Q ss_pred             CCCCcccc--eEeCCC---------CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCC
Q 026163           66 SDHCKWTG--IRCNSA---------GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSM  134 (242)
Q Consensus        66 ~~~C~w~g--v~c~~~---------~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~  134 (242)
                      ...|.|.+  +.|...         .+++.|+++++   .+.+.. +..+..+++|++|++++|.......+..|.++++
T Consensus         5 ~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n---~i~~~~-~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~   80 (455)
T 3v47_A            5 TSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLN---SIAELN-ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS   80 (455)
T ss_dssp             --CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSS---CCCEEC-TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTT
T ss_pred             cceeEEEccccCcCCCCcccCCCCCCccCEEEecCC---ccCcCC-hhHhccCccccEEECcCCcccceECccccccccc
Confidence            34565555  777422         47899999998   777665 7889999999999999766532233566899999


Q ss_pred             CCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcC--cCCCCCCCEEEeecCCCccccccc-cCCCCCCcEEE
Q 026163          135 LQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPT--LGRLSKLKILNLSSNFLVGNIPLT-LCHLSKLKILN  211 (242)
Q Consensus       135 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~  211 (242)
                      |++|++++|++++..|..+.++++|++|++++|++++..|..  +..+++|++|++++|++++..|.. +..+++|++|+
T Consensus        81 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  160 (455)
T 3v47_A           81 LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD  160 (455)
T ss_dssp             CCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEE
T ss_pred             CCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEe
Confidence            999999999999888999999999999999999998755555  899999999999999999877766 88999999999


Q ss_pred             cccCCCCCCCcccccCC
Q 026163          212 LSSNSLVGNIPPTLGHL  228 (242)
Q Consensus       212 L~~N~l~~~~p~~l~~l  228 (242)
                      +++|.+++..+..+..+
T Consensus       161 L~~n~l~~~~~~~l~~l  177 (455)
T 3v47_A          161 LTFNKVKSICEEDLLNF  177 (455)
T ss_dssp             CTTCCBSCCCTTTSGGG
T ss_pred             CCCCcccccChhhhhcc
Confidence            99999998777665543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=2.4e-21  Score=160.47  Aligned_cols=133  Identities=27%  Similarity=0.253  Sum_probs=66.0

Q ss_pred             CCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCE
Q 026163          106 CFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKI  185 (242)
Q Consensus       106 ~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  185 (242)
                      .+++|++|++++|.+  ..+|..+..+++|++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|++
T Consensus        75 ~l~~L~~L~Ls~N~l--~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  152 (290)
T 1p9a_G           75 TLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK  152 (290)
T ss_dssp             CCTTCCEEECCSSCC--SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCcCCEEECCCCcC--CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence            344444444443333  234444445555555555555555444444555555555555555555444444455555555


Q ss_pred             EEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163          186 LNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       186 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l  241 (242)
                      |++++|++++..+..+..+++|++|++++|+++ .+|..+...++|+.+++++|++
T Consensus       153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             EECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence            555555555333333445555555555555555 3444444555555555555543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.87  E-value=4e-21  Score=151.35  Aligned_cols=146  Identities=22%  Similarity=0.250  Sum_probs=74.7

Q ss_pred             CCcccceEeCCC----------CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCE
Q 026163           68 HCKWTGIRCNSA----------GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQT  137 (242)
Q Consensus        68 ~C~w~gv~c~~~----------~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~  137 (242)
                      .|.|.++.|...          .+++.|+++++   .+.+ +++..+..+++|++|++++|++ ++..+..+..+++|++
T Consensus         6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n---~l~~-~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~   80 (208)
T 2o6s_A            6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETN---SLKS-LPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTY   80 (208)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCSEEECCSS---CCCC-CCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCE
T ss_pred             EECCCEEEecCCCccCCCCCCCCCCcEEEcCCC---ccCc-CChhhhcccccCcEEECCCCcc-CccChhhcCCCCCcCE
Confidence            478999999632          23555555554   4432 2233445555555555554333 2222223445555555


Q ss_pred             EeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCC
Q 026163          138 LELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSL  217 (242)
Q Consensus       138 L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l  217 (242)
                      |++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+
T Consensus        81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A           81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             EECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence            55555555544334445555555555555555544444455555555555555555543333355555555555555544


Q ss_pred             C
Q 026163          218 V  218 (242)
Q Consensus       218 ~  218 (242)
                      .
T Consensus       161 ~  161 (208)
T 2o6s_A          161 D  161 (208)
T ss_dssp             C
T ss_pred             e
Confidence            4

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=5.1e-21  Score=156.96  Aligned_cols=155  Identities=25%  Similarity=0.269  Sum_probs=136.1

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN  158 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  158 (242)
                      ..+++.|++.++   .+..   ...+..+++|++|++++|++ . .+ +.+..+++|++|++++|++++..+..+..+++
T Consensus        40 l~~L~~L~l~~~---~i~~---~~~l~~l~~L~~L~l~~n~l-~-~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  110 (272)
T 3rfs_A           40 LNSIDQIIANNS---DIKS---VQGIQYLPNVRYLALGGNKL-H-DI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTN  110 (272)
T ss_dssp             HTTCCEEECTTS---CCCC---CTTGGGCTTCCEEECTTSCC-C-CC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             ccceeeeeeCCC---Cccc---ccccccCCCCcEEECCCCCC-C-Cc-hhhcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence            467889999887   5543   35688999999999997765 3 34 36889999999999999999877778899999


Q ss_pred             CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163          159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN  238 (242)
Q Consensus       159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~  238 (242)
                      |++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus       111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  190 (272)
T 3rfs_A          111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ  190 (272)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC
Confidence            99999999999977777799999999999999999977777789999999999999999987777789999999999999


Q ss_pred             CCCC
Q 026163          239 KVAI  242 (242)
Q Consensus       239 N~lt  242 (242)
                      |+++
T Consensus       191 N~l~  194 (272)
T 3rfs_A          191 NQLK  194 (272)
T ss_dssp             SCCS
T ss_pred             CcCC
Confidence            9875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.86  E-value=1.7e-21  Score=174.20  Aligned_cols=156  Identities=17%  Similarity=0.220  Sum_probs=130.3

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL  159 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  159 (242)
                      .+++.|+++++   .+.+.. +..+..+++|++|++++|++ .+..|..|.++++|++|++++|++++..|..++++++|
T Consensus        26 ~~L~~L~Ls~n---~l~~~~-~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  100 (549)
T 2z81_A           26 AAMKSLDLSFN---KITYIG-HGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL  100 (549)
T ss_dssp             TTCCEEECCSS---CCCEEC-SSTTSSCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred             CCccEEECcCC---ccCccC-hhhhhcCCcccEEECCCCCc-CccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence            47999999998   777655 78899999999999996654 45566779999999999999999998777779999999


Q ss_pred             cEEEcccCcCCC-CCCcCcCCCCCCCEEEeecCCCccccc-cccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCc
Q 026163          160 VRLDLSDNYIGG-YIPPTLGRLSKLKILNLSSNFLVGNIP-LTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMS  237 (242)
Q Consensus       160 ~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls  237 (242)
                      ++|++++|++++ ..|..+.++++|++|++++|.+.+.+| ..+.++++|++|++++|.+++..|..++.+++|++|+++
T Consensus       101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  180 (549)
T 2z81_A          101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH  180 (549)
T ss_dssp             CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred             cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence            999999999986 356789999999999999998544554 679999999999999999998888877766655555555


Q ss_pred             CCC
Q 026163          238 NKV  240 (242)
Q Consensus       238 ~N~  240 (242)
                      +|.
T Consensus       181 ~n~  183 (549)
T 2z81_A          181 LSE  183 (549)
T ss_dssp             CSB
T ss_pred             cCc
Confidence            554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.86  E-value=5.7e-21  Score=156.76  Aligned_cols=157  Identities=22%  Similarity=0.290  Sum_probs=126.3

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL  159 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  159 (242)
                      ..++.|+++++   .+.+.. +..+..+++|++|++++|.+ .+..+..+..+++|++|++++|++++..+..+.++++|
T Consensus        28 ~~l~~L~ls~n---~l~~~~-~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (276)
T 2z62_A           28 FSTKNLDLSFN---PLRHLG-SYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL  102 (276)
T ss_dssp             TTCCEEECTTC---CCCEEC-TTTTTTCTTCSEEECTTCCC-CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred             CCccEEECCCC---cccccC-HhHhccccCCcEEECCCCcC-CccCHHHccCCcCCCEEECCCCccCccChhhhcCCccc
Confidence            46889999887   766544 66888999999999996654 44445568889999999999999997777888999999


Q ss_pred             cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccc-cccccCCCCCCcEEEcccCCCCCCCcccccCCcCCC----EE
Q 026163          160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGN-IPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLT----TL  234 (242)
Q Consensus       160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~----~L  234 (242)
                      ++|++++|.+++..+..+..+++|++|++++|++++. +|..+..+++|++|++++|.+++..+..+..+++|+    +|
T Consensus       103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L  182 (276)
T 2z62_A          103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL  182 (276)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEE
T ss_pred             cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceee
Confidence            9999999999877666788999999999999999863 588889999999999999998876666665555554    56


Q ss_pred             eCcCCCC
Q 026163          235 AMSNKVA  241 (242)
Q Consensus       235 ~ls~N~l  241 (242)
                      ++++|++
T Consensus       183 ~ls~n~l  189 (276)
T 2z62_A          183 DLSLNPM  189 (276)
T ss_dssp             ECCSSCC
T ss_pred             ecCCCcc
Confidence            6666655

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.86  E-value=9.3e-21  Score=166.03  Aligned_cols=87  Identities=23%  Similarity=0.199  Sum_probs=61.3

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL  159 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  159 (242)
                      .+++.|+++++   ++.+.. +..|..+++|++|++++|++ ++..+..|.++++|++|++++|++++..+..+..+++|
T Consensus        75 ~~l~~L~L~~n---~i~~~~-~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  149 (452)
T 3zyi_A           75 SNTRYLNLMEN---NIQMIQ-ADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL  149 (452)
T ss_dssp             TTCSEEECCSS---CCCEEC-TTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTC
T ss_pred             CCccEEECcCC---cCceEC-HHHcCCCCCCCEEECCCCcc-CCcChhhccCcccCCEEECCCCcCCccChhhhcccCCC
Confidence            46888888887   666654 67778888888888885543 44445667777777777777777775555556677777


Q ss_pred             cEEEcccCcCCC
Q 026163          160 VRLDLSDNYIGG  171 (242)
Q Consensus       160 ~~L~Ls~N~l~~  171 (242)
                      ++|++++|+++.
T Consensus       150 ~~L~L~~N~l~~  161 (452)
T 3zyi_A          150 RELWLRNNPIES  161 (452)
T ss_dssp             CEEECCSCCCCE
T ss_pred             CEEECCCCCcce
Confidence            777777776653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.86  E-value=3.2e-21  Score=160.45  Aligned_cols=158  Identities=23%  Similarity=0.289  Sum_probs=106.6

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCC-CCChhccCCcC
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTG-IIPSEMGRLRN  158 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~  158 (242)
                      .+++.|+++++   .+.+..+...+..+++|++|++++|. +.+..+..+..+++|++|++++|.+++ ..|..+..+++
T Consensus       101 ~~L~~L~l~~n---~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  176 (306)
T 2z66_A          101 EQLEHLDFQHS---NLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN  176 (306)
T ss_dssp             TTCCEEECTTS---EEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             CCCCEEECCCC---cccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcC
Confidence            34455555444   33332212456667777777777444 334455556677777777777777765 45666777777


Q ss_pred             CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCc-CCCEEeCc
Q 026163          159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLT-QLTTLAMS  237 (242)
Q Consensus       159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~ls  237 (242)
                      |++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..|..+..++ +|++|+++
T Consensus       177 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~  256 (306)
T 2z66_A          177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT  256 (306)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred             CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEcc
Confidence            77777777777766677777777777777777777765555677777777788877777777777777774 77888887


Q ss_pred             CCCC
Q 026163          238 NKVA  241 (242)
Q Consensus       238 ~N~l  241 (242)
                      +|++
T Consensus       257 ~N~~  260 (306)
T 2z66_A          257 QNDF  260 (306)
T ss_dssp             TCCE
T ss_pred             CCCe
Confidence            7765

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.86  E-value=1e-20  Score=166.54  Aligned_cols=158  Identities=27%  Similarity=0.270  Sum_probs=134.8

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL  159 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  159 (242)
                      .+++.|+++++   .+.+.. +..|..+++|++|++++|. +++..|..|.++++|++|++++|++++..+..|.++++|
T Consensus        32 ~~l~~L~L~~n---~l~~~~-~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  106 (477)
T 2id5_A           32 TETRLLDLGKN---RIKTLN-QDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL  106 (477)
T ss_dssp             TTCSEEECCSS---CCCEEC-TTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred             CCCcEEECCCC---ccceEC-HhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCC
Confidence            47889999988   777655 7889999999999999664 455667789999999999999999996666678899999


Q ss_pred             cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCC
Q 026163          160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNK  239 (242)
Q Consensus       160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N  239 (242)
                      ++|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus       107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  186 (477)
T 2id5_A          107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL  186 (477)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred             CEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence            99999999999888888999999999999999999887888899999999999999998766677888888888888888


Q ss_pred             CCC
Q 026163          240 VAI  242 (242)
Q Consensus       240 ~lt  242 (242)
                      .++
T Consensus       187 ~i~  189 (477)
T 2id5_A          187 NIN  189 (477)
T ss_dssp             CCC
T ss_pred             cCc
Confidence            763

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=1.7e-20  Score=151.97  Aligned_cols=166  Identities=22%  Similarity=0.233  Sum_probs=140.0

Q ss_pred             CCCcccceEeCCCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCC
Q 026163           67 DHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLT  146 (242)
Q Consensus        67 ~~C~w~gv~c~~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~  146 (242)
                      +||.|.|.+|.  ...+.++++++   ++. .+ +..+.  +++++|++++|++ .+..+..+.++++|++|++++|+++
T Consensus         3 ~Cp~~~gC~C~--~~~~~l~~~~~---~l~-~~-p~~~~--~~l~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~   72 (251)
T 3m19_A            3 TCETVTGCTCN--EGKKEVDCQGK---SLD-SV-PSGIP--ADTEKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQ   72 (251)
T ss_dssp             -CHHHHSSEEE--GGGTEEECTTC---CCS-SC-CSCCC--TTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred             cCCCCCceEcC--CCCeEEecCCC---Ccc-cc-CCCCC--CCCCEEEccCCCc-CccCHhHhcCcccCCEEECCCCcCC
Confidence            46689999995  23456888776   544 34 33333  6899999996654 4555667999999999999999999


Q ss_pred             CCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCccccc
Q 026163          147 GIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLG  226 (242)
Q Consensus       147 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~  226 (242)
                      +..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+.
T Consensus        73 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  152 (251)
T 3m19_A           73 TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD  152 (251)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcC
Confidence            88888899999999999999999977778899999999999999999977676789999999999999999977667899


Q ss_pred             CCcCCCEEeCcCCCCC
Q 026163          227 HLTQLTTLAMSNKVAI  242 (242)
Q Consensus       227 ~l~~L~~L~ls~N~lt  242 (242)
                      .+++|++|++++|+|+
T Consensus       153 ~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A          153 KLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             TCTTCCEEECCSSCCS
T ss_pred             cCcCCCEEECCCCcCC
Confidence            9999999999999875

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.85  E-value=2.1e-20  Score=154.80  Aligned_cols=156  Identities=23%  Similarity=0.184  Sum_probs=137.5

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN  158 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  158 (242)
                      ..+++.|+++++   .+.+.. +..+..+++|++|++++|.+ + .++. ...+++|++|++++|+++ .+|..+..+++
T Consensus        30 ~~~l~~L~L~~N---~l~~~~-~~~~~~l~~L~~L~L~~n~l-~-~~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~  101 (290)
T 1p9a_G           30 PKDTTILHLSEN---LLYTFS-LATLMPYTRLTQLNLDRAEL-T-KLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPA  101 (290)
T ss_dssp             CTTCCEEECTTS---CCSEEE-GGGGTTCTTCCEEECTTSCC-C-EEEC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTT
T ss_pred             CCCCCEEEcCCC---cCCccC-HHHhhcCCCCCEEECCCCcc-C-cccC-CCCCCcCCEEECCCCcCC-cCchhhccCCC
Confidence            357899999998   777665 77899999999999997765 2 3444 378999999999999998 78888899999


Q ss_pred             CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163          159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN  238 (242)
Q Consensus       159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~  238 (242)
                      |++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|++|++++
T Consensus       102 L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~  181 (290)
T 1p9a_G          102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE  181 (290)
T ss_dssp             CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCC
Confidence            99999999999977778899999999999999999977777789999999999999999966556778999999999999


Q ss_pred             CCCC
Q 026163          239 KVAI  242 (242)
Q Consensus       239 N~lt  242 (242)
                      |+|+
T Consensus       182 N~l~  185 (290)
T 1p9a_G          182 NSLY  185 (290)
T ss_dssp             SCCC
T ss_pred             CcCC
Confidence            9875

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.85  E-value=2.4e-20  Score=162.89  Aligned_cols=155  Identities=26%  Similarity=0.252  Sum_probs=105.8

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL  159 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  159 (242)
                      ..++.|+++++   .+.+.. +..|..+++|++|++++|++ .+..+..|.++++|++|++++|++++..+..|..+++|
T Consensus        64 ~~l~~L~L~~n---~i~~~~-~~~~~~l~~L~~L~Ls~n~i-~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  138 (440)
T 3zyj_A           64 TNTRLLNLHEN---QIQIIK-VNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKL  138 (440)
T ss_dssp             TTCSEEECCSC---CCCEEC-TTTTSSCSSCCEEECCSSCC-CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSC
T ss_pred             CCCcEEEccCC---cCCeeC-HHHhhCCCCCCEEECCCCcC-CccChhhccCCccCCEEECCCCcCCeeCHhHhhccccC
Confidence            46788888887   666554 67888889999999986554 44455678888888888888888886666678888888


Q ss_pred             cEEEcccCcCCCCCCcCcCCCCCCCEEEeec-------------------------CCCccccccccCCCCCCcEEEccc
Q 026163          160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSS-------------------------NFLVGNIPLTLCHLSKLKILNLSS  214 (242)
Q Consensus       160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-------------------------N~l~~~~p~~l~~l~~L~~L~L~~  214 (242)
                      ++|++++|+++...+..+.++++|++|++++                         |+++ .+| .+..+++|++|++++
T Consensus       139 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~  216 (440)
T 3zyj_A          139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSG  216 (440)
T ss_dssp             CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTT
T ss_pred             ceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCC
Confidence            8888888888755444555555555555555                         4444 223 244555566666666


Q ss_pred             CCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163          215 NSLVGNIPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       215 N~l~~~~p~~l~~l~~L~~L~ls~N~l  241 (242)
                      |.+++..|..+.++++|++|++++|+|
T Consensus       217 N~l~~~~~~~~~~l~~L~~L~L~~n~l  243 (440)
T 3zyj_A          217 NHLSAIRPGSFQGLMHLQKLWMIQSQI  243 (440)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             CccCccChhhhccCccCCEEECCCCce
Confidence            666655556666666666666666655

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.84  E-value=1.2e-20  Score=170.62  Aligned_cols=159  Identities=21%  Similarity=0.263  Sum_probs=138.5

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN  158 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  158 (242)
                      ..+++.|+++++   .+.+.. +..|..+++|++|++++|.+ ++..|..|.++++|++|++++|++++..|..|+++++
T Consensus        31 ~~~l~~L~Ls~n---~l~~~~-~~~~~~l~~L~~L~Ls~n~l-~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  105 (606)
T 3vq2_A           31 PSSTKNIDLSFN---PLKILK-SYSFSNFSELQWLDLSRCEI-ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS  105 (606)
T ss_dssp             CTTCCEEECTTS---CCCEEC-TTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred             CCCcCEEECCCC---CcCEeC-hhhccCCccCcEEeCCCCcc-cccCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence            357999999998   777655 77899999999999996654 4556778999999999999999999888999999999


Q ss_pred             CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCcc-ccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCC----E
Q 026163          159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVG-NIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLT----T  233 (242)
Q Consensus       159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~----~  233 (242)
                      |++|++++|++++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..+..++.+++|+    +
T Consensus       106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~  185 (606)
T 3vq2_A          106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS  185 (606)
T ss_dssp             CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCE
T ss_pred             CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccce
Confidence            9999999999997777889999999999999999986 5799999999999999999999987777777666554    7


Q ss_pred             EeCcCCCCC
Q 026163          234 LAMSNKVAI  242 (242)
Q Consensus       234 L~ls~N~lt  242 (242)
                      |++++|+++
T Consensus       186 L~l~~n~l~  194 (606)
T 3vq2_A          186 LDMSLNPID  194 (606)
T ss_dssp             EECTTCCCC
T ss_pred             eeccCCCcc
Confidence            888888764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.84  E-value=8.2e-21  Score=148.46  Aligned_cols=151  Identities=22%  Similarity=0.248  Sum_probs=129.5

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN  158 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  158 (242)
                      ..+++.|+++++   .+. .+ + .+..+++|++|++++|..   ..++.+..+++|++|++++|++++..+..+..+++
T Consensus        43 l~~L~~L~l~~n---~i~-~l-~-~l~~l~~L~~L~l~~n~~---~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  113 (197)
T 4ezg_A           43 MNSLTYITLANI---NVT-DL-T-GIEYAHNIKDLTINNIHA---TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTS  113 (197)
T ss_dssp             HHTCCEEEEESS---CCS-CC-T-TGGGCTTCSEEEEESCCC---SCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTT
T ss_pred             cCCccEEeccCC---Ccc-Ch-H-HHhcCCCCCEEEccCCCC---CcchhhhcCCCCCEEEeECCccCcccChhhcCCCC
Confidence            457889999987   666 44 3 688999999999997744   33456889999999999999999878889999999


Q ss_pred             CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCC-CccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCc
Q 026163          159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNF-LVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMS  237 (242)
Q Consensus       159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls  237 (242)
                      |++|++++|++++..|..+..+++|++|++++|. ++ .+| .+..+++|++|++++|.+++ ++ .+..+++|++|+++
T Consensus       114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~  189 (197)
T 4ezg_A          114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAF  189 (197)
T ss_dssp             CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEEC
T ss_pred             CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEee
Confidence            9999999999998788889999999999999998 66 556 68999999999999999985 44 68899999999999


Q ss_pred             CCCCC
Q 026163          238 NKVAI  242 (242)
Q Consensus       238 ~N~lt  242 (242)
                      +|+|.
T Consensus       190 ~N~i~  194 (197)
T 4ezg_A          190 SQTIG  194 (197)
T ss_dssp             BC---
T ss_pred             CcccC
Confidence            99874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.84  E-value=1.5e-20  Score=176.50  Aligned_cols=170  Identities=20%  Similarity=0.218  Sum_probs=141.1

Q ss_pred             CCCcccceEeCCCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCC
Q 026163           67 DHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLT  146 (242)
Q Consensus        67 ~~C~w~gv~c~~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~  146 (242)
                      ..|.|..|.+ ...+++.|+++++   .+.+.. +..|..+++|++|++++|+......|..|.++++|++|++++|+++
T Consensus        12 s~~~L~~vP~-lp~~l~~LdLs~N---~i~~i~-~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~   86 (844)
T 3j0a_A           12 RFCNLTQVPQ-VLNTTERLLLSFN---YIRTVT-ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY   86 (844)
T ss_dssp             SCCCSSCCCS-SCTTCCEEEEESC---CCCEEC-SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred             cCCCCCCCCC-CCCCcCEEECCCC---cCCccC-hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence            3467888887 6789999999998   777665 7889999999999999775543333677999999999999999999


Q ss_pred             CCCChhccCCcCCcEEEcccCcCCCCCCcC--cCCCCCCCEEEeecCCCccccc-cccCCCCCCcEEEcccCCCCCCCcc
Q 026163          147 GIIPSEMGRLRNLVRLDLSDNYIGGYIPPT--LGRLSKLKILNLSSNFLVGNIP-LTLCHLSKLKILNLSSNSLVGNIPP  223 (242)
Q Consensus       147 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~  223 (242)
                      +..|..|.++++|++|++++|.+++..|..  +.++++|++|++++|.+++..+ ..++++++|++|++++|.+++..+.
T Consensus        87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~  166 (844)
T 3j0a_A           87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH  166 (844)
T ss_dssp             EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred             ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence            888999999999999999999999766665  8999999999999999987654 5789999999999999999877777


Q ss_pred             cccCC--cCCCEEeCcCCCC
Q 026163          224 TLGHL--TQLTTLAMSNKVA  241 (242)
Q Consensus       224 ~l~~l--~~L~~L~ls~N~l  241 (242)
                      .+..+  ++|+.|++++|.+
T Consensus       167 ~l~~l~~~~L~~L~L~~n~l  186 (844)
T 3j0a_A          167 ELEPLQGKTLSFFSLAANSL  186 (844)
T ss_dssp             GGHHHHHCSSCCCEECCSBS
T ss_pred             HcccccCCccceEECCCCcc
Confidence            66655  5566666665554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=3.1e-20  Score=149.26  Aligned_cols=153  Identities=18%  Similarity=0.214  Sum_probs=100.5

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccC-ccCCCCCChhccCCcC
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPS-SRLTGIIPSEMGRLRN  158 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~  158 (242)
                      ..++.|+++++   .+.+.. +..|..+++|++|++++|+.+++..+..|.++++|++|++++ |++++..+..|.++++
T Consensus        31 ~~l~~L~l~~n---~l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~  106 (239)
T 2xwt_C           31 PSTQTLKLIET---HLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL  106 (239)
T ss_dssp             TTCCEEEEESC---CCSEEC-TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTT
T ss_pred             CcccEEEEeCC---cceEEC-HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCC
Confidence            46888888887   665543 667888888888888866534433344677888888888887 8888666667778888


Q ss_pred             CcEEEcccCcCCCCCCcCcCCCCCCC---EEEeecC-CCccccccccCCCCCCc-EEEcccCCCCCCCcccccCCcCCCE
Q 026163          159 LVRLDLSDNYIGGYIPPTLGRLSKLK---ILNLSSN-FLVGNIPLTLCHLSKLK-ILNLSSNSLVGNIPPTLGHLTQLTT  233 (242)
Q Consensus       159 L~~L~Ls~N~l~~~~p~~~~~l~~L~---~L~L~~N-~l~~~~p~~l~~l~~L~-~L~L~~N~l~~~~p~~l~~l~~L~~  233 (242)
                      |++|++++|++++ +|. +..+++|+   +|++++| ++++..+..|..+++|+ +|++++|.++ .+|......++|++
T Consensus       107 L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~  183 (239)
T 2xwt_C          107 LKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDA  183 (239)
T ss_dssp             CCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEE
T ss_pred             CCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCE
Confidence            8888888887774 554 66666666   6666666 66654444566666666 6666666655 33322222244555


Q ss_pred             EeCcCC
Q 026163          234 LAMSNK  239 (242)
Q Consensus       234 L~ls~N  239 (242)
                      |++++|
T Consensus       184 L~L~~n  189 (239)
T 2xwt_C          184 VYLNKN  189 (239)
T ss_dssp             EECTTC
T ss_pred             EEcCCC
Confidence            555555

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.84  E-value=1e-20  Score=161.30  Aligned_cols=168  Identities=23%  Similarity=0.165  Sum_probs=134.6

Q ss_pred             CcccceEeC----------CCCCeEEEEecccCCCCceeeeCCCCcC-CCCCCCEEEecCCCcccccCchhhhcCCCCCE
Q 026163           69 CKWTGIRCN----------SAGSVIRVSLLWYENDNMKGELGRFNFS-CFPNLKSFKIHSNYLLSGSIPSEITALSMLQT  137 (242)
Q Consensus        69 C~w~gv~c~----------~~~~v~~L~l~~~~~~~~~~~i~~~~~~-~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~  137 (242)
                      |.+..+.|.          ....++.|+++++   .+.+.. +..+. .+++|++|++++|++ ++..+..|..+++|++
T Consensus        18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N---~l~~l~-~~~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~   92 (361)
T 2xot_A           18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHN---NLSRLR-AEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRY   92 (361)
T ss_dssp             EETTEEECCSSCCSSCCSSCCTTCSEEECCSS---CCCEEC-TTSSSSCCTTCCEEECCSSCC-CEECTTTTTTCTTCCE
T ss_pred             ECCCEEEeCCCCcCccCccCCCCCCEEECCCC---CCCccC-hhhhhhcccccCEEECCCCcC-CccChhhccCCCCCCE
Confidence            556666663          2335788999887   776654 66676 899999999996654 4444566889999999


Q ss_pred             EeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCcccccccc---CCCCCCcEEEccc
Q 026163          138 LELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTL---CHLSKLKILNLSS  214 (242)
Q Consensus       138 L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l---~~l~~L~~L~L~~  214 (242)
                      |++++|++++..+..|.++++|++|++++|++++..|..|..+++|++|+|++|++++..+..+   ..+++|+.|++++
T Consensus        93 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~  172 (361)
T 2xot_A           93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS  172 (361)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS
T ss_pred             EECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC
Confidence            9999999997777788999999999999999998778889999999999999999996444444   5789999999999


Q ss_pred             CCCCCCCcccccCCcC--CCEEeCcCCCC
Q 026163          215 NSLVGNIPPTLGHLTQ--LTTLAMSNKVA  241 (242)
Q Consensus       215 N~l~~~~p~~l~~l~~--L~~L~ls~N~l  241 (242)
                      |.+++..+..+..++.  ++.|++++|++
T Consensus       173 N~l~~l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             SCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             CCCCccCHHHhhhccHhhcceEEecCCCc
Confidence            9999666577788876  48899999986

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.84  E-value=4.2e-20  Score=161.36  Aligned_cols=137  Identities=23%  Similarity=0.228  Sum_probs=92.8

Q ss_pred             CcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCC
Q 026163          103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSK  182 (242)
Q Consensus       103 ~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  182 (242)
                      .|..+++|++|++++++.+....+..|.++++|++|++++|+++ .+| .+..+++|++|++++|++++..|..+..+++
T Consensus       155 ~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  232 (440)
T 3zyj_A          155 AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMH  232 (440)
T ss_dssp             TTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             HhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCcc
Confidence            34444444444444333332222234566667777777777776 344 3566777777777777777666777777788


Q ss_pred             CCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163          183 LKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       183 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l  241 (242)
                      |++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++
T Consensus       233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            88888888888777777777788888888888888766666677788888888888865

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.84  E-value=9e-21  Score=158.45  Aligned_cols=158  Identities=20%  Similarity=0.191  Sum_probs=124.5

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCc--CCCCCCCEEEecCCCcccccCchhhhcC-----CCCCEEeccCccCCCCCCh
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNF--SCFPNLKSFKIHSNYLLSGSIPSEITAL-----SMLQTLELPSSRLTGIIPS  151 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~--~~l~~L~~L~l~~~~~~~~~~p~~~~~l-----~~L~~L~l~~n~l~~~~p~  151 (242)
                      ..+++.|+++++   .+.+.+ +..+  ..+++|++|++++|.+ ++. |..+..+     ++|++|++++|++++..|.
T Consensus        94 l~~L~~L~L~~n---~l~~~~-~~~~~~~~l~~L~~L~Ls~N~l-~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~  167 (312)
T 1wwl_A           94 ISGLQELTLENL---EVTGTA-PPPLLEATGPDLNILNLRNVSW-ATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE  167 (312)
T ss_dssp             TSCCCEEEEEEE---BCBSCC-CCCSSSCCSCCCSEEEEESCBC-SSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT
T ss_pred             cCCccEEEccCC---cccchh-HHHHHHhcCCCccEEEccCCCC-cch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH
Confidence            568999999998   888887 4444  8999999999996665 444 7777776     8999999999999988878


Q ss_pred             hccCCcCCcEEEcccCcCCCC--CCcCc--CCCCCCCEEEeecCCCcc--ccc-cccCCCCCCcEEEcccCCCCCCCc-c
Q 026163          152 EMGRLRNLVRLDLSDNYIGGY--IPPTL--GRLSKLKILNLSSNFLVG--NIP-LTLCHLSKLKILNLSSNSLVGNIP-P  223 (242)
Q Consensus       152 ~~~~l~~L~~L~Ls~N~l~~~--~p~~~--~~l~~L~~L~L~~N~l~~--~~p-~~l~~l~~L~~L~L~~N~l~~~~p-~  223 (242)
                      .++++++|++|++++|++.+.  .|..+  ..+++|++|++++|++++  .++ ..+..+++|++|++++|.+++..| .
T Consensus       168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  247 (312)
T 1wwl_A          168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP  247 (312)
T ss_dssp             TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred             HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh
Confidence            999999999999999998754  23333  788889999999998883  222 334577888888888888887664 4


Q ss_pred             cccCCcCCCEEeCcCCCCC
Q 026163          224 TLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       224 ~l~~l~~L~~L~ls~N~lt  242 (242)
                      .+..+++|++|++++|+|+
T Consensus       248 ~~~~l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          248 SCDWPSQLNSLNLSFTGLK  266 (312)
T ss_dssp             CCCCCTTCCEEECTTSCCS
T ss_pred             hhhhcCCCCEEECCCCccC
Confidence            5566788888888888764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.83  E-value=3.3e-20  Score=167.85  Aligned_cols=158  Identities=23%  Similarity=0.325  Sum_probs=132.0

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL  159 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  159 (242)
                      ..++.|+++++   .+.+ +++..|..+++|++|++++|++ ++..|..|.++++|++|+|++|++++..+..|.++++|
T Consensus        52 ~~~~~LdLs~N---~i~~-l~~~~f~~l~~L~~L~Ls~N~i-~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L  126 (635)
T 4g8a_A           52 FSTKNLDLSFN---PLRH-LGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL  126 (635)
T ss_dssp             TTCCEEECTTS---CCCE-ECTTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred             cCCCEEEeeCC---CCCC-CCHHHHhCCCCCCEEECCCCcC-CCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence            47899999998   7765 4478899999999999997665 44445578999999999999999997777789999999


Q ss_pred             cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCcc-ccccccCCCCCCcEEEcccCCCCCCCcccccCCcCC----CEE
Q 026163          160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVG-NIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQL----TTL  234 (242)
Q Consensus       160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L----~~L  234 (242)
                      ++|++++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|++++..+..+..++++    ..+
T Consensus       127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~  206 (635)
T 4g8a_A          127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL  206 (635)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred             CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhh
Confidence            999999999997777789999999999999999976 457788999999999999999998777777655443    367


Q ss_pred             eCcCCCCC
Q 026163          235 AMSNKVAI  242 (242)
Q Consensus       235 ~ls~N~lt  242 (242)
                      +++.|.++
T Consensus       207 ~ls~n~l~  214 (635)
T 4g8a_A          207 DLSLNPMN  214 (635)
T ss_dssp             ECTTCCCC
T ss_pred             hcccCccc
Confidence            77777653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.83  E-value=8.6e-21  Score=165.88  Aligned_cols=134  Identities=22%  Similarity=0.289  Sum_probs=121.8

Q ss_pred             CCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEE
Q 026163          108 PNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILN  187 (242)
Q Consensus       108 ~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  187 (242)
                      ++|++|++++|++ .+..|..+..+++|++|++++|++++..|..+.++++|++|++++|++++..|..+..+++|++|+
T Consensus       275 ~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          275 SGVKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             SCCCEEECCSSCC-CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred             cCceEEEecCccc-cccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence            6899999996554 556778899999999999999999988888999999999999999999988888999999999999


Q ss_pred             eecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163          188 LSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       188 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      +++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus       354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  408 (455)
T 3v47_A          354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  408 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence            9999999888999999999999999999999766677889999999999999875

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.83  E-value=5e-20  Score=143.54  Aligned_cols=113  Identities=29%  Similarity=0.335  Sum_probs=97.2

Q ss_pred             CCCEEEecCCCcccccCch-hhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEE
Q 026163          109 NLKSFKIHSNYLLSGSIPS-EITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILN  187 (242)
Q Consensus       109 ~L~~L~l~~~~~~~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  187 (242)
                      ++++|++++|++ ++..+. .+..+++|++|++++|++++..|..|.++++|++|++++|++++..+..+..+++|++|+
T Consensus        30 ~l~~L~l~~n~i-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           30 HTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TCSEEECCSCCC-CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCEEECCCCcC-CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence            889999997665 333332 388899999999999999988888999999999999999999988888899999999999


Q ss_pred             eecCCCccccccccCCCCCCcEEEcccCCCCCCCc
Q 026163          188 LSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP  222 (242)
Q Consensus       188 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p  222 (242)
                      +++|++++..|..+..+++|++|++++|++.+..+
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            99999998888889999999999999999986544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=4.2e-20  Score=145.44  Aligned_cols=135  Identities=22%  Similarity=0.213  Sum_probs=117.2

Q ss_pred             CCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEE
Q 026163          107 FPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKIL  186 (242)
Q Consensus       107 l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  186 (242)
                      .+++++|++++|++ ++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus        27 ~~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           27 PAQTTYLDLETNSL-KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL  105 (208)
T ss_dssp             CTTCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEEcCCCcc-CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence            56899999997665 44444457899999999999999997666678999999999999999997766678999999999


Q ss_pred             EeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163          187 NLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       187 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      ++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus       106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A          106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence            99999999776767899999999999999999766677899999999999999864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.83  E-value=4.4e-20  Score=166.93  Aligned_cols=156  Identities=20%  Similarity=0.174  Sum_probs=87.5

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCc-hhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIP-SEITALSMLQTLELPSSRLTGIIPSEMGRLRN  158 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  158 (242)
                      .+++.|+++++   .+.+ + +..+..+++|++|++++|.+ .+..| ..+..+++|++|++++|.+++..|..+.++++
T Consensus       376 ~~L~~L~L~~n---~l~~-~-~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  449 (606)
T 3vq2_A          376 NSLRHLDLSFN---GAII-M-SANFMGLEELQHLDFQHSTL-KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS  449 (606)
T ss_dssp             SCCCEEECCSC---SEEE-E-CCCCTTCTTCCEEECTTSEE-ESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred             CcccEeECCCC---cccc-c-hhhccCCCCCCeeECCCCcc-CCccChhhhhccccCCEEECcCCCCCccchhhhcCCCC
Confidence            34555555554   3332 3 35555666666666664433 22333 34555666666666666666555555556666


Q ss_pred             CcEEEcccCcCCC-CCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCc
Q 026163          159 LVRLDLSDNYIGG-YIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMS  237 (242)
Q Consensus       159 L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls  237 (242)
                      |++|++++|++++ ..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|++|+++
T Consensus       450 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~  529 (606)
T 3vq2_A          450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS  529 (606)
T ss_dssp             CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECT
T ss_pred             CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECC
Confidence            6666666666554 245555556666666666666655555555556666666666666655555555555566666666


Q ss_pred             CCCC
Q 026163          238 NKVA  241 (242)
Q Consensus       238 ~N~l  241 (242)
                      +|+|
T Consensus       530 ~N~l  533 (606)
T 3vq2_A          530 FNRI  533 (606)
T ss_dssp             TSCC
T ss_pred             CCcC
Confidence            5554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.83  E-value=6.8e-20  Score=165.72  Aligned_cols=158  Identities=18%  Similarity=0.107  Sum_probs=140.6

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL  159 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  159 (242)
                      ..++.|+++++   .+.+.. +..|..+++|++|++++|.+ .+..|..|.++++|++|++++|++++..|..++++++|
T Consensus        33 ~~l~~L~Ls~n---~i~~~~-~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  107 (606)
T 3t6q_A           33 NSTECLEFSFN---VLPTIQ-NTTFSRLINLTFLDLTRCQI-YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL  107 (606)
T ss_dssp             TTCCEEECTTC---CCSEEC-TTTSTTCTTCSEEECTTCCC-CEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred             CcCcEEEccCC---ccCcCC-hhHhccCccceEEECCCCcc-ceeChhhccCccccCeeeCCCCcccccChhhhcccccc
Confidence            47899999998   777655 78999999999999996654 45668889999999999999999998889999999999


Q ss_pred             cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCC--EEeCc
Q 026163          160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLT--TLAMS  237 (242)
Q Consensus       160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~--~L~ls  237 (242)
                      ++|++++|++++..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+++..|..++.+++|+  +|+++
T Consensus       108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~  187 (606)
T 3t6q_A          108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN  187 (606)
T ss_dssp             CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECT
T ss_pred             cEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecC
Confidence            9999999999977688899999999999999999974434555699999999999999988888899999999  89999


Q ss_pred             CCCCC
Q 026163          238 NKVAI  242 (242)
Q Consensus       238 ~N~lt  242 (242)
                      +|+++
T Consensus       188 ~n~l~  192 (606)
T 3t6q_A          188 GNDIA  192 (606)
T ss_dssp             TCCCC
T ss_pred             CCccC
Confidence            99874

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.83  E-value=8e-20  Score=160.10  Aligned_cols=157  Identities=20%  Similarity=0.172  Sum_probs=98.0

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCc------------------------ccccCchhhhcCCC
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYL------------------------LSGSIPSEITALSM  134 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~------------------------~~~~~p~~~~~l~~  134 (242)
                      ..+++.|+++++   .+.+ +++..+..+++|++|++++|.+                        +....+..+..+++
T Consensus       122 l~~L~~L~L~~n---~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~  197 (452)
T 3zyi_A          122 LASLNTLELFDN---WLTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN  197 (452)
T ss_dssp             CTTCCEEECCSS---CCSB-CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT
T ss_pred             cccCCEEECCCC---cCCc-cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC
Confidence            346777777766   5443 2244566666666666664443                        22111223455566


Q ss_pred             CCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEccc
Q 026163          135 LQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSS  214 (242)
Q Consensus       135 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~  214 (242)
                      |++|++++|++++ +| .+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..|..+++|+.|++++
T Consensus       198 L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  275 (452)
T 3zyi_A          198 LKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH  275 (452)
T ss_dssp             CCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCC
Confidence            6666666666653 33 355666666777777776666666677777777777777777766666677777777777777


Q ss_pred             CCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163          215 NSLVGNIPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       215 N~l~~~~p~~l~~l~~L~~L~ls~N~l  241 (242)
                      |++++..+..+..+++|+.|++++|++
T Consensus       276 N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          276 NNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             SCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             CcCCccChHHhccccCCCEEEccCCCc
Confidence            777755556666777777777777764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.83  E-value=6.1e-20  Score=150.58  Aligned_cols=159  Identities=21%  Similarity=0.243  Sum_probs=110.7

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN  158 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  158 (242)
                      ..+++.|+++++   .+.+.. +..+..+++|++|++++|.+ .+..+..+.++++|++|++++|++++..+..+..+++
T Consensus        51 l~~L~~L~l~~n---~l~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  125 (276)
T 2z62_A           51 FPELQVLDLSRC---EIQTIE-DGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT  125 (276)
T ss_dssp             CTTCSEEECTTC---CCCEEC-TTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred             ccCCcEEECCCC---cCCccC-HHHccCCcCCCEEECCCCcc-CccChhhhcCCccccEEECCCCCccccCchhcccCCC
Confidence            456777777776   555433 55677777788888875544 3344455777777777777777777655556777777


Q ss_pred             CcEEEcccCcCCCC-CCcCcCCCCCCCEEEeecCCCcccccccc---------------------------CCCCCCcEE
Q 026163          159 LVRLDLSDNYIGGY-IPPTLGRLSKLKILNLSSNFLVGNIPLTL---------------------------CHLSKLKIL  210 (242)
Q Consensus       159 L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l---------------------------~~l~~L~~L  210 (242)
                      |++|++++|++++. +|..+..+++|++|++++|++++..+..+                           ....+|++|
T Consensus       126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L  205 (276)
T 2z62_A          126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKEL  205 (276)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEE
T ss_pred             CCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEE
Confidence            77777777777653 46677777777777777777765433222                           223378888


Q ss_pred             EcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163          211 NLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       211 ~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      ++++|.+++..+..+..+++|++|++++|+++
T Consensus       206 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             ECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             ECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            88888888665666788999999999999874

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.82  E-value=6.5e-20  Score=157.57  Aligned_cols=154  Identities=18%  Similarity=0.102  Sum_probs=118.3

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL  159 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  159 (242)
                      .+++.+++.++   . .+.+++..+..+++|++|++++|.+ .+..+..+..+++|++|++++|++++..|..+.++++|
T Consensus        45 ~~l~~l~l~~~---~-l~~l~~~~~~~l~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           45 NNQKIVTFKNS---T-MRKLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  119 (390)
T ss_dssp             CCCSEEEEESC---E-ESEECTHHHHHCCCCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCceEEEecCC---c-hhhCChhHhcccccCcEEECCCCcc-cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence            46777888775   4 3445455578899999999996654 44445578889999999999999998778888999999


Q ss_pred             cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCC
Q 026163          160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNK  239 (242)
Q Consensus       160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N  239 (242)
                      ++|++++|+++...+..+.++++|++|++++|++++..|..+..+++|++|++++|.+++..   +..+++|++|++++|
T Consensus       120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n  196 (390)
T 3o6n_A          120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYN  196 (390)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSS
T ss_pred             CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccc
Confidence            99999999998544445688999999999999999777778899999999999999988542   344455555555544


Q ss_pred             CC
Q 026163          240 VA  241 (242)
Q Consensus       240 ~l  241 (242)
                      .+
T Consensus       197 ~l  198 (390)
T 3o6n_A          197 LL  198 (390)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.82  E-value=1.1e-19  Score=166.60  Aligned_cols=159  Identities=23%  Similarity=0.231  Sum_probs=138.6

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN  158 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  158 (242)
                      ..+++.|+++++   .+.+.. +..|..+++|++|++++|. +.+..|..+.++++|++|++++|++++..+..|.++++
T Consensus        24 ~~~l~~L~Ls~n---~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~   98 (680)
T 1ziw_A           24 PTNITVLNLTHN---QLRRLP-AANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN   98 (680)
T ss_dssp             CTTCSEEECCSS---CCCCCC-GGGGGGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCCCcEEECCCC---CCCCcC-HHHHhCCCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence            468999999998   776644 6679999999999999665 45667888999999999999999999655557999999


Q ss_pred             CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCccccc--CCcCCCEEeC
Q 026163          159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLG--HLTQLTTLAM  236 (242)
Q Consensus       159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~l  236 (242)
                      |++|++++|++++..|..+.++++|++|++++|.+++..|..+.++++|++|++++|.+++..+..+.  .+++|++|++
T Consensus        99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L  178 (680)
T 1ziw_A           99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL  178 (680)
T ss_dssp             CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEEC
T ss_pred             CCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEEC
Confidence            99999999999977778899999999999999999988888899999999999999999977776654  5689999999


Q ss_pred             cCCCCC
Q 026163          237 SNKVAI  242 (242)
Q Consensus       237 s~N~lt  242 (242)
                      ++|+++
T Consensus       179 ~~n~l~  184 (680)
T 1ziw_A          179 SSNQIK  184 (680)
T ss_dssp             TTCCCC
T ss_pred             CCCccc
Confidence            999764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.82  E-value=1.8e-19  Score=151.58  Aligned_cols=165  Identities=21%  Similarity=0.257  Sum_probs=111.1

Q ss_pred             CcccceEeCC----------CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEE
Q 026163           69 CKWTGIRCNS----------AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTL  138 (242)
Q Consensus        69 C~w~gv~c~~----------~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L  138 (242)
                      |.|..+.|..          ..+++.|+++++   .+.+.. +..+..+++|++|++++|.+ ++..|..+.++++|++|
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n---~i~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L  107 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNN---DISELR-KDDFKGLQHLYALVLVNNKI-SKIHEKAFSPLRKLQKL  107 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSS---CCCEEC-TTTTTTCTTCCEEECCSSCC-CEECGGGSTTCTTCCEE
T ss_pred             ccCCEEECCCCCccccCCCCCCCCeEEECCCC---cCCccC-HhHhhCCCCCcEEECCCCcc-CccCHhHhhCcCCCCEE
Confidence            6788888852          237899999988   766544 67899999999999996654 45567788899999999


Q ss_pred             eccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCc------------------------
Q 026163          139 ELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLV------------------------  194 (242)
Q Consensus       139 ~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~------------------------  194 (242)
                      ++++|+++ .+|..+.  ++|++|++++|++++..+..+..+++|++|++++|.++                        
T Consensus       108 ~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l  184 (332)
T 2ft3_A          108 YISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL  184 (332)
T ss_dssp             ECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBC
T ss_pred             ECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCC
Confidence            99999887 4554443  56666666666666444444555666666666555553                        


Q ss_pred             ----------------------cccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163          195 ----------------------GNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       195 ----------------------~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l  241 (242)
                                            +..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus       185 ~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  253 (332)
T 2ft3_A          185 TGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL  253 (332)
T ss_dssp             SSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC
T ss_pred             CccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC
Confidence                                  22333455556666666666666655555566666666666666655

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.82  E-value=9.5e-20  Score=164.95  Aligned_cols=153  Identities=18%  Similarity=0.102  Sum_probs=121.0

Q ss_pred             CeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCc
Q 026163           81 SVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLV  160 (242)
Q Consensus        81 ~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~  160 (242)
                      +++.+++.++   . .+.+|+..+..+++|++|++++|. +.+..|..|..+++|++|++++|.+++..|..|+++++|+
T Consensus        52 ~l~~l~l~~~---~-l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           52 NQKIVTFKNS---T-MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             CCSEEEESSC---E-ESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CceEEEeeCC---C-CCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence            4567777664   4 345646667889999999999665 4455566789999999999999999988888889999999


Q ss_pred             EEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCC
Q 026163          161 RLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKV  240 (242)
Q Consensus       161 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~  240 (242)
                      +|++++|.+++..+..|..+++|++|++++|.+++..|..++.+++|++|++++|.+++..   ++.+++|+.|++++|.
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL  203 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred             EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCc
Confidence            9999999999655556789999999999999999888888999999999999999998643   3344555555555554


Q ss_pred             C
Q 026163          241 A  241 (242)
Q Consensus       241 l  241 (242)
                      +
T Consensus       204 l  204 (597)
T 3oja_B          204 L  204 (597)
T ss_dssp             C
T ss_pred             c
Confidence            3

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.82  E-value=6.5e-21  Score=173.85  Aligned_cols=165  Identities=18%  Similarity=0.250  Sum_probs=130.2

Q ss_pred             cccceEe--CCCCCeEEEEecccCCCCceee-----------------eCCCCcC--CCCCCCEEEecCCCcccccCchh
Q 026163           70 KWTGIRC--NSAGSVIRVSLLWYENDNMKGE-----------------LGRFNFS--CFPNLKSFKIHSNYLLSGSIPSE  128 (242)
Q Consensus        70 ~w~gv~c--~~~~~v~~L~l~~~~~~~~~~~-----------------i~~~~~~--~l~~L~~L~l~~~~~~~~~~p~~  128 (242)
                      ...|+.-  ....+++.|+++++   .+.+.                 + |..+.  .+++|++|++++|+ +.+.+|..
T Consensus       194 ~l~~ip~~l~~l~~L~~L~Ls~n---~l~~~~~~~~~~~~~~~~~~~~i-p~~l~~~~l~~L~~L~L~~n~-l~~~~p~~  268 (636)
T 4eco_A          194 NITFVSKAVMRLTKLRQFYMGNS---PFVAENICEAWENENSEYAQQYK-TEDLKWDNLKDLTDVEVYNCP-NLTKLPTF  268 (636)
T ss_dssp             EEEEECGGGGGCTTCCEEEEESC---CCCGGGBSSSCSCTTSHHHHHHT-TSCCCGGGCTTCCEEEEECCT-TCSSCCTT
T ss_pred             CCccCCHHHhcccCCCEEECcCC---ccccccccccccccccchhcccC-chhhhhcccCCCCEEEecCCc-CCccChHH
Confidence            4455432  13567889999888   77774                 6 67777  89999999998554 45688888


Q ss_pred             hhcCCCCCEEeccCcc-CCC-CCChhccCC------cCCcEEEcccCcCCCCCCc--CcCCCCCCCEEEeecCCCccccc
Q 026163          129 ITALSMLQTLELPSSR-LTG-IIPSEMGRL------RNLVRLDLSDNYIGGYIPP--TLGRLSKLKILNLSSNFLVGNIP  198 (242)
Q Consensus       129 ~~~l~~L~~L~l~~n~-l~~-~~p~~~~~l------~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p  198 (242)
                      +.++++|++|++++|+ +++ .+|..++.+      ++|++|++++|+++ .+|.  .++++++|++|++++|+++|.+|
T Consensus       269 l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip  347 (636)
T 4eco_A          269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP  347 (636)
T ss_dssp             TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred             HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh
Confidence            8899999999999998 887 788877776      88899999988888 7887  78888888888888888887787


Q ss_pred             cccCCCCCCcEEEcccCCCCCCCcccccCCcC-CCEEeCcCCCCC
Q 026163          199 LTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQ-LTTLAMSNKVAI  242 (242)
Q Consensus       199 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~ls~N~lt  242 (242)
                       .++.+++|++|++++|.++ .+|..+..+++ |++|++++|+++
T Consensus       348 -~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~  390 (636)
T 4eco_A          348 -AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK  390 (636)
T ss_dssp             -CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS
T ss_pred             -hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc
Confidence             7777777888888887777 67777777777 777777777663

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=2.2e-19  Score=142.81  Aligned_cols=148  Identities=22%  Similarity=0.232  Sum_probs=129.2

Q ss_pred             CcccceEeCC----------CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEE
Q 026163           69 CKWTGIRCNS----------AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTL  138 (242)
Q Consensus        69 C~w~gv~c~~----------~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L  138 (242)
                      |.|..+.|..          ...++.|+++++   .+.+..+...|..+++|++|++++|.+ ++..+..|..+++|++|
T Consensus        11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N---~l~~~~~~~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L   86 (220)
T 2v70_A           11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNN---EFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVNEI   86 (220)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCSEEECCSS---CCCEECCCCCGGGCTTCCEEECCSSCC-CEECTTTTTTCTTCCEE
T ss_pred             ECCCEeEeCCCCcccCccCCCCCCCEEEcCCC---cCCccCchhhhccCCCCCEEECCCCcC-CEECHHHhCCCCCCCEE
Confidence            6777788742          235789999998   887765456789999999999996654 44555679999999999


Q ss_pred             eccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCC
Q 026163          139 ELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV  218 (242)
Q Consensus       139 ~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  218 (242)
                      ++++|++++..+..|..+++|++|++++|++++..|..+..+++|++|++++|++++..|..|..+++|++|++++|++.
T Consensus        87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             ECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             ECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            99999999888888999999999999999999888999999999999999999999888999999999999999999987


Q ss_pred             CC
Q 026163          219 GN  220 (242)
Q Consensus       219 ~~  220 (242)
                      +.
T Consensus       167 c~  168 (220)
T 2v70_A          167 CN  168 (220)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.82  E-value=5.2e-20  Score=140.11  Aligned_cols=133  Identities=26%  Similarity=0.227  Sum_probs=102.3

Q ss_pred             CCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEE
Q 026163          107 FPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKIL  186 (242)
Q Consensus       107 l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  186 (242)
                      .++|++|++++|++..+.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            467888888866654356777777888888888888888754  667788888888888888886677777778888888


Q ss_pred             EeecCCCcccc-ccccCCCCCCcEEEcccCCCCCCCc---ccccCCcCCCEEeCcCCCC
Q 026163          187 NLSSNFLVGNI-PLTLCHLSKLKILNLSSNSLVGNIP---PTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       187 ~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~ls~N~l  241 (242)
                      ++++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            88888887532 2677888888888888888875544   3677888888888888865

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.82  E-value=8.5e-20  Score=146.72  Aligned_cols=159  Identities=17%  Similarity=0.197  Sum_probs=130.0

Q ss_pred             CCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCc
Q 026163           78 SAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLR  157 (242)
Q Consensus        78 ~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~  157 (242)
                      ...+++.|+++++   .....+++..|..+++|++|++++++.+++..+..|..+++|++|++++|++++ +|. +..++
T Consensus        53 ~l~~L~~L~l~~n---~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~  127 (239)
T 2xwt_C           53 NLPNISRIYVSID---VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVY  127 (239)
T ss_dssp             TCTTCCEEEEECC---SSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCC
T ss_pred             CCCCCcEEeCCCC---CCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccc
Confidence            3467999999987   645556567899999999999997244444444568899999999999999995 666 88888


Q ss_pred             CCc---EEEcccC-cCCCCCCcCcCCCCCCC-EEEeecCCCccccccccCCCCCCcEEEcccCC-CCCCCcccccCC-cC
Q 026163          158 NLV---RLDLSDN-YIGGYIPPTLGRLSKLK-ILNLSSNFLVGNIPLTLCHLSKLKILNLSSNS-LVGNIPPTLGHL-TQ  230 (242)
Q Consensus       158 ~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l-~~  230 (242)
                      +|+   +|++++| .+++..+..+..+++|+ +|++++|+++ .+|......++|+.|++++|+ +++..+..+..+ ++
T Consensus       128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~  206 (239)
T 2xwt_C          128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG  206 (239)
T ss_dssp             BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBC
T ss_pred             ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccC
Confidence            888   9999999 99866667799999999 9999999999 455443334899999999995 886666778899 99


Q ss_pred             CCEEeCcCCCCC
Q 026163          231 LTTLAMSNKVAI  242 (242)
Q Consensus       231 L~~L~ls~N~lt  242 (242)
                      |++|++++|+++
T Consensus       207 L~~L~l~~N~l~  218 (239)
T 2xwt_C          207 PSLLDVSQTSVT  218 (239)
T ss_dssp             CSEEECTTCCCC
T ss_pred             CcEEECCCCccc
Confidence            999999999875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.81  E-value=2e-19  Score=151.22  Aligned_cols=136  Identities=23%  Similarity=0.290  Sum_probs=91.3

Q ss_pred             CcCCCCCCCEEEecCCCccc-ccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCC
Q 026163          103 NFSCFPNLKSFKIHSNYLLS-GSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLS  181 (242)
Q Consensus       103 ~~~~l~~L~~L~l~~~~~~~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  181 (242)
                      .+..+++|++|++++|.+.. +..+..+..+++|++|++++|+++ .+|..+.  ++|++|++++|++++..|..+..++
T Consensus       140 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~  216 (330)
T 1xku_A          140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLN  216 (330)
T ss_dssp             HHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCT
T ss_pred             HhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCC
Confidence            35556666666666544321 233445666666666666666665 3444332  5677777777777666666777777


Q ss_pred             CCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163          182 KLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       182 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      +|++|++++|++++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|+|+
T Consensus       217 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  276 (330)
T ss_dssp             TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence            8888888888777666666777778888888888777 66777777778888888877764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.81  E-value=5.1e-19  Score=151.98  Aligned_cols=110  Identities=19%  Similarity=0.188  Sum_probs=61.4

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL  159 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  159 (242)
                      .+++.|+++++   .+.+.. +..+..+++|++|++++|.+ .+..|..+.++++|++|++++|+++...+..+.++++|
T Consensus        69 ~~L~~L~L~~n---~i~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  143 (390)
T 3o6n_A           69 RQVELLNLNDL---QIEEID-TYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL  143 (390)
T ss_dssp             CCCSEEECTTS---CCCEEC-TTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             ccCcEEECCCC---cccccC-hhhccCCCCcCEEECCCCCC-CcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCC
Confidence            45666666665   444332 45566666666666664443 33334445566666666666666663333334556666


Q ss_pred             cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCc
Q 026163          160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLV  194 (242)
Q Consensus       160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  194 (242)
                      ++|++++|++++..|..+..+++|++|++++|+++
T Consensus       144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             cEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence            66666666665555555555555565555555554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.81  E-value=2.5e-19  Score=161.99  Aligned_cols=156  Identities=22%  Similarity=0.188  Sum_probs=80.7

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCc-hhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIP-SEITALSMLQTLELPSSRLTGIIPSEMGRLRN  158 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  158 (242)
                      .+++.|+++++   .+.+.. +..+..+++|++|++++|.+. +..| ..+..+++|++|++++|.+++..|..+..+++
T Consensus       376 ~~L~~L~l~~n---~l~~~~-~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  450 (606)
T 3t6q_A          376 SHLQSLNLSYN---EPLSLK-TEAFKECPQLELLDLAFTRLK-VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA  450 (606)
T ss_dssp             TTCCEEECCSC---SCEEEC-TTTTTTCTTCSEEECTTCCEE-CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred             CCCCEEECCCC---cCCcCC-HHHhcCCccCCeEECCCCcCC-CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence            34555555555   444433 455555566666666544332 2222 22455555555555555555555555555555


Q ss_pred             CcEEEcccCcCCCC---CCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEe
Q 026163          159 LVRLDLSDNYIGGY---IPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLA  235 (242)
Q Consensus       159 L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  235 (242)
                      |++|++++|++++.   .+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+.++++| +|+
T Consensus       451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~  529 (606)
T 3t6q_A          451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN  529 (606)
T ss_dssp             CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEE
T ss_pred             CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEE
Confidence            55555555555431   12334455555555555555554445555555555555555555555555555555555 555


Q ss_pred             CcCCCC
Q 026163          236 MSNKVA  241 (242)
Q Consensus       236 ls~N~l  241 (242)
                      +++|++
T Consensus       530 L~~N~l  535 (606)
T 3t6q_A          530 LASNHI  535 (606)
T ss_dssp             CCSSCC
T ss_pred             CcCCcc
Confidence            555544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.81  E-value=2.1e-19  Score=159.76  Aligned_cols=157  Identities=21%  Similarity=0.287  Sum_probs=133.0

Q ss_pred             CCCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccc--cCchhhhcCCCCCEEeccCccCCCCCChh-c
Q 026163           77 NSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSG--SIPSEITALSMLQTLELPSSRLTGIIPSE-M  153 (242)
Q Consensus        77 ~~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~  153 (242)
                      ....+++.|+++++   .+.+.+ +..+..+++|++|++++|++ .+  .+|..+..+++|++|++++|++++.+|.. +
T Consensus       321 ~~l~~L~~L~Ls~n---~l~~~~-~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~  395 (520)
T 2z7x_B          321 SKISPFLHLDFSNN---LLTDTV-FENCGHLTELETLILQMNQL-KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC  395 (520)
T ss_dssp             SSCCCCCEEECCSS---CCCTTT-TTTCCCCSSCCEEECCSSCC-CBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC
T ss_pred             hhCCcccEEEeECC---ccChhh-hhhhccCCCCCEEEccCCcc-CccccchHHHhhCCCCCEEECCCCcCCcccccchh
Confidence            34567889999988   777766 67889999999999997665 33  45667889999999999999999756654 7


Q ss_pred             cCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCccc-ccCCcCCC
Q 026163          154 GRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPT-LGHLTQLT  232 (242)
Q Consensus       154 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~  232 (242)
                      ..+++|++|++++|++++..|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+
T Consensus       396 ~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~  471 (520)
T 2z7x_B          396 SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQ  471 (520)
T ss_dssp             CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred             ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCccc
Confidence            8889999999999999877777665  78999999999999 78888889999999999999999 46654 88999999


Q ss_pred             EEeCcCCCCC
Q 026163          233 TLAMSNKVAI  242 (242)
Q Consensus       233 ~L~ls~N~lt  242 (242)
                      +|++++|+++
T Consensus       472 ~L~l~~N~~~  481 (520)
T 2z7x_B          472 KIWLHTNPWD  481 (520)
T ss_dssp             EEECCSSCBC
T ss_pred             EEECcCCCCc
Confidence            9999999874

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.81  E-value=1.1e-19  Score=162.95  Aligned_cols=158  Identities=20%  Similarity=0.226  Sum_probs=133.3

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCc-hhhhcCCCCCEEeccCccCCCCCChhccCCc
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIP-SEITALSMLQTLELPSSRLTGIIPSEMGRLR  157 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~  157 (242)
                      ..+++.|+++++   .+.+.. +. +..+++|++|++++|.+ .+..| ..+..+++|++|++++|.+++..|..+.+++
T Consensus       372 ~~~L~~L~l~~n---~l~~~~-~~-~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  445 (570)
T 2z63_A          372 TTSLKYLDLSFN---GVITMS-SN-FLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS  445 (570)
T ss_dssp             CSCCCEEECCSC---SEEEEE-EE-EETCTTCCEEECTTSEE-ESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred             cCccCEEECCCC---cccccc-cc-ccccCCCCEEEccCCcc-ccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCC
Confidence            345667777666   555543 33 78889999999986654 33333 4578899999999999999988888999999


Q ss_pred             CCcEEEcccCcCC-CCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeC
Q 026163          158 NLVRLDLSDNYIG-GYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAM  236 (242)
Q Consensus       158 ~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l  236 (242)
                      +|++|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus       446 ~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  525 (570)
T 2z63_A          446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL  525 (570)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             cCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEe
Confidence            9999999999997 578889999999999999999999888989999999999999999999887788999999999999


Q ss_pred             cCCCCC
Q 026163          237 SNKVAI  242 (242)
Q Consensus       237 s~N~lt  242 (242)
                      ++|+++
T Consensus       526 ~~N~~~  531 (570)
T 2z63_A          526 HTNPWD  531 (570)
T ss_dssp             CSSCBC
T ss_pred             cCCccc
Confidence            999874

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.81  E-value=1.9e-19  Score=161.36  Aligned_cols=159  Identities=22%  Similarity=0.286  Sum_probs=138.9

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN  158 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  158 (242)
                      ..+++.|+++++   .+.+.. +..|..+++|++|++++|++ ++..|..|.++++|++|++++|++++..|..|.++++
T Consensus        27 ~~~l~~L~Ls~n---~l~~~~-~~~~~~l~~L~~L~Ls~n~i-~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (570)
T 2z63_A           27 PFSTKNLDLSFN---PLRHLG-SYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS  101 (570)
T ss_dssp             CSSCCEEECCSC---CCCEEC-TTTTTTCSSCCEEECTTCCC-CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred             cccccEEEccCC---ccCccC-hhHhhCCCCceEEECCCCcC-CccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence            457899999998   776654 77899999999999997654 4455667899999999999999999888889999999


Q ss_pred             CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCcc-ccccccCCCCCCcEEEcccCCCCCCCcccccCCcCC----CE
Q 026163          159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVG-NIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQL----TT  233 (242)
Q Consensus       159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L----~~  233 (242)
                      |++|++++|++++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..+..++.+++|    +.
T Consensus       102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~  181 (570)
T 2z63_A          102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS  181 (570)
T ss_dssp             CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCE
T ss_pred             cccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhh
Confidence            9999999999996666579999999999999999987 468899999999999999999998778888888888    88


Q ss_pred             EeCcCCCCC
Q 026163          234 LAMSNKVAI  242 (242)
Q Consensus       234 L~ls~N~lt  242 (242)
                      +++++|.++
T Consensus       182 L~l~~n~l~  190 (570)
T 2z63_A          182 LDLSLNPMN  190 (570)
T ss_dssp             EECTTCCCC
T ss_pred             cccCCCCce
Confidence            999999764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.81  E-value=9e-20  Score=154.73  Aligned_cols=159  Identities=17%  Similarity=0.150  Sum_probs=134.5

Q ss_pred             CCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchh-hhcCCCCCEEeccCccCCCCCC-hhccC
Q 026163           78 SAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSE-ITALSMLQTLELPSSRLTGIIP-SEMGR  155 (242)
Q Consensus        78 ~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~-~~~l~~L~~L~l~~n~l~~~~p-~~~~~  155 (242)
                      ...+++.|+++++   .+.+.. +..+..+++|++|++++|++ + .+|.. +.++++|++|++++|++++..+ ..+.+
T Consensus        74 ~l~~L~~L~L~~n---~l~~~~-~~~~~~l~~L~~L~Ls~n~l-~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~  147 (353)
T 2z80_A           74 RCVNLQALVLTSN---GINTIE-EDSFSSLGSLEHLDLSYNYL-S-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSH  147 (353)
T ss_dssp             TCTTCCEEECTTS---CCCEEC-TTTTTTCTTCCEEECCSSCC-S-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTT
T ss_pred             cCCCCCEEECCCC---ccCccC-HhhcCCCCCCCEEECCCCcC-C-cCCHhHhCCCccCCEEECCCCCCcccCchhhhcc
Confidence            3568999999988   777654 77899999999999997765 3 45554 8899999999999999995433 47899


Q ss_pred             CcCCcEEEcccC-cCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEE
Q 026163          156 LRNLVRLDLSDN-YIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTL  234 (242)
Q Consensus       156 l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  234 (242)
                      +++|++|++++| .++...+..+.++++|++|++++|++++..|..+..+++|++|++++|.+....+..+..+++|++|
T Consensus       148 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  227 (353)
T 2z80_A          148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL  227 (353)
T ss_dssp             CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEE
T ss_pred             CCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEE
Confidence            999999999999 4776667789999999999999999998889999999999999999999974333445568999999


Q ss_pred             eCcCCCCC
Q 026163          235 AMSNKVAI  242 (242)
Q Consensus       235 ~ls~N~lt  242 (242)
                      ++++|+++
T Consensus       228 ~L~~n~l~  235 (353)
T 2z80_A          228 ELRDTDLD  235 (353)
T ss_dssp             EEESCBCT
T ss_pred             ECCCCccc
Confidence            99999874

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.81  E-value=9.3e-20  Score=152.27  Aligned_cols=153  Identities=25%  Similarity=0.265  Sum_probs=123.1

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCccccc--Cchhh--hcCCCCCEEeccCccCCCC--CC-hh
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGS--IPSEI--TALSMLQTLELPSSRLTGI--IP-SE  152 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~--~p~~~--~~l~~L~~L~l~~n~l~~~--~p-~~  152 (242)
                      .+++.|+++++   .+.+.. +..+..+++|++|++++|+. .+.  +|..+  ..+++|++|++++|++++.  ++ ..
T Consensus       149 ~~L~~L~L~~N---~l~~~~-~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  223 (312)
T 1wwl_A          149 PGLKVLSIAQA---HSLNFS-CEQVRVFPALSTLDLSDNPE-LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL  223 (312)
T ss_dssp             TTCCEEEEESC---SCCCCC-TTTCCCCSSCCEEECCSCTT-CHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred             CCCcEEEeeCC---CCccch-HHHhccCCCCCEEECCCCCc-CcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence            57888888887   665544 67889999999999997664 233  34444  7889999999999999831  22 33


Q ss_pred             ccCCcCCcEEEcccCcCCCCCC-cCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCC
Q 026163          153 MGRLRNLVRLDLSDNYIGGYIP-PTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQL  231 (242)
Q Consensus       153 ~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  231 (242)
                      +..+++|++|++++|++++..| ..+..+++|++|++++|+++ .+|..+.  ++|++|++++|++++. |. +..+++|
T Consensus       224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L  298 (312)
T 1wwl_A          224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQV  298 (312)
T ss_dssp             HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEE
T ss_pred             HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCC
Confidence            4678999999999999997765 45677899999999999999 7787766  8999999999999965 65 8899999


Q ss_pred             CEEeCcCCCCC
Q 026163          232 TTLAMSNKVAI  242 (242)
Q Consensus       232 ~~L~ls~N~lt  242 (242)
                      ++|++++|+|+
T Consensus       299 ~~L~L~~N~l~  309 (312)
T 1wwl_A          299 GNLSLKGNPFL  309 (312)
T ss_dssp             EEEECTTCTTT
T ss_pred             CEEeccCCCCC
Confidence            99999999985

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.81  E-value=6e-19  Score=159.69  Aligned_cols=158  Identities=20%  Similarity=0.164  Sum_probs=108.2

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL  159 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  159 (242)
                      .+++.|+++++   .+.+.. +..|..+++|++|++++|. +.+..|..|.++++|++|++++|.+++..+..|.++++|
T Consensus        75 ~~L~~L~L~~n---~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  149 (597)
T 3oja_B           75 RQVELLNLNDL---QIEEID-TYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL  149 (597)
T ss_dssp             CCCSEEECTTS---CCCEEC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCcEEECCCC---CCCCCC-hHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence            46788888877   666544 6677888888888888555 444445556778888888888888875545556777888


Q ss_pred             cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccc-----------------------------------------
Q 026163          160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIP-----------------------------------------  198 (242)
Q Consensus       160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-----------------------------------------  198 (242)
                      ++|++++|.+++..|..+..+++|++|++++|.+++..+                                         
T Consensus       150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~  229 (597)
T 3oja_B          150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP  229 (597)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS
T ss_pred             CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc
Confidence            888888888877666677777777777777776654211                                         


Q ss_pred             ------------------cccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163          199 ------------------LTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       199 ------------------~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                                        ..+..+++|+.|++++|.+++..|..++.+++|+.|++++|+++
T Consensus       230 ~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  291 (597)
T 3oja_B          230 VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV  291 (597)
T ss_dssp             CCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC
T ss_pred             cCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC
Confidence                              12344566666777777766666666666667777777666653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.81  E-value=3e-19  Score=157.25  Aligned_cols=157  Identities=23%  Similarity=0.212  Sum_probs=129.6

Q ss_pred             CCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCch-hhhcCCCCCEEeccCccCCCCCChhccCC
Q 026163           78 SAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPS-EITALSMLQTLELPSSRLTGIIPSEMGRL  156 (242)
Q Consensus        78 ~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l  156 (242)
                      ...+++.|+++++   .+.+.. +..|..+++|++|++++|++ . .+|. .|.++++|++|++++|++++..|..+.++
T Consensus        54 ~l~~L~~L~L~~n---~i~~~~-~~~~~~l~~L~~L~L~~n~l-~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l  127 (477)
T 2id5_A           54 SFPHLEELELNEN---IVSAVE-PGAFNNLFNLRTLGLRSNRL-K-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL  127 (477)
T ss_dssp             TCTTCCEEECTTS---CCCEEC-TTTTTTCTTCCEEECCSSCC-C-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             CCCCCCEEECCCC---ccCEeC-hhhhhCCccCCEEECCCCcC-C-ccCcccccCCCCCCEEECCCCccccCChhHcccc
Confidence            3467899999887   777655 78899999999999997665 3 4554 47889999999999999998888888999


Q ss_pred             cCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeC
Q 026163          157 RNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAM  236 (242)
Q Consensus       157 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l  236 (242)
                      ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus       128 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  207 (477)
T 2id5_A          128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI  207 (477)
T ss_dssp             TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEE
T ss_pred             ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeC
Confidence            99999999999998878888999999999999999998766667888888888888888888766667777777777777


Q ss_pred             cCCC
Q 026163          237 SNKV  240 (242)
Q Consensus       237 s~N~  240 (242)
                      ++|+
T Consensus       208 ~~~~  211 (477)
T 2id5_A          208 SHWP  211 (477)
T ss_dssp             ECCT
T ss_pred             CCCc
Confidence            7654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=6.9e-19  Score=139.97  Aligned_cols=146  Identities=22%  Similarity=0.268  Sum_probs=127.2

Q ss_pred             CcccceEeCC----------CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEE
Q 026163           69 CKWTGIRCNS----------AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTL  138 (242)
Q Consensus        69 C~w~gv~c~~----------~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L  138 (242)
                      |.|..+.|..          ..+++.|+++++   .+.+.. +..|..+++|++|++++|.+ ++..|..|.++++|++|
T Consensus        11 C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n---~i~~i~-~~~~~~l~~L~~L~Ls~N~i-~~~~~~~~~~l~~L~~L   85 (220)
T 2v9t_B           11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQN---TIKVIP-PGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSL   85 (220)
T ss_dssp             EETTEEECTTSCCSSCCSSCCTTCCEEECCSS---CCCEEC-TTSSTTCTTCCEEECCSSCC-CEECTTTTTTCSSCCEE
T ss_pred             ECCCEEEcCCCCcCcCCCccCcCCCEEECCCC---cCCCcC-HhHhhCCCCCCEEECCCCcC-CCcCHHHhhCCcCCCEE
Confidence            6788888852          236899999998   776544 77899999999999996654 55668889999999999


Q ss_pred             eccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCC
Q 026163          139 ELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV  218 (242)
Q Consensus       139 ~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  218 (242)
                      ++++|+++...+..|.++++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++.
T Consensus        86 ~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            99999999666666899999999999999999888999999999999999999999877778999999999999999986


Q ss_pred             C
Q 026163          219 G  219 (242)
Q Consensus       219 ~  219 (242)
                      .
T Consensus       166 c  166 (220)
T 2v9t_B          166 C  166 (220)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.80  E-value=6.5e-19  Score=148.03  Aligned_cols=164  Identities=21%  Similarity=0.299  Sum_probs=110.8

Q ss_pred             CCcccceEeCC----------CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCE
Q 026163           68 HCKWTGIRCNS----------AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQT  137 (242)
Q Consensus        68 ~C~w~gv~c~~----------~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~  137 (242)
                      .|.|+.+.|..          ...++.|+++++   .+.+.. +..+..+++|++|++++|.+ ++..|..+..+++|++
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n---~i~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~  104 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNN---KITEIK-DGDFKNLKNLHTLILINNKI-SKISPGAFAPLVKLER  104 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSS---CCCCBC-TTTTTTCTTCCEEECCSSCC-CCBCTTTTTTCTTCCE
T ss_pred             cCCCeEEEecCCCccccCccCCCCCeEEECCCC---cCCEeC-hhhhccCCCCCEEECCCCcC-CeeCHHHhcCCCCCCE
Confidence            46788888852          246888999887   766544 66789999999999996654 4555778889999999


Q ss_pred             EeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCC--------------------------cCcCCCCCCCEEEeecC
Q 026163          138 LELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIP--------------------------PTLGRLSKLKILNLSSN  191 (242)
Q Consensus       138 L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--------------------------~~~~~l~~L~~L~L~~N  191 (242)
                      |++++|+++ .+|..+.  ++|++|++++|++++..+                          ..+..+++|++|++++|
T Consensus       105 L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n  181 (330)
T 1xku_A          105 LYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT  181 (330)
T ss_dssp             EECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred             EECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence            999999887 4444332  455555555555554333                          34444455555555555


Q ss_pred             CCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163          192 FLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       192 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      +++ .+|..+.  ++|++|++++|.+++..|..+..+++|++|++++|+++
T Consensus       182 ~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  229 (330)
T 1xku_A          182 NIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS  229 (330)
T ss_dssp             CCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred             ccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc
Confidence            544 2333322  56677777777777666777888888888888888764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.80  E-value=7.5e-20  Score=171.33  Aligned_cols=156  Identities=17%  Similarity=0.215  Sum_probs=130.8

Q ss_pred             CCCCeEEEEecccCCCCcee-----------------eeCCCCcC--CCCCCCEEEecCCCcccccCchhhhcCCCCCEE
Q 026163           78 SAGSVIRVSLLWYENDNMKG-----------------ELGRFNFS--CFPNLKSFKIHSNYLLSGSIPSEITALSMLQTL  138 (242)
Q Consensus        78 ~~~~v~~L~l~~~~~~~~~~-----------------~i~~~~~~--~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L  138 (242)
                      ...+++.|+++++   .+.+                 .+ |..+.  .+++|++|++++|+ +.+.+|..+.++++|++|
T Consensus       446 ~L~~L~~L~Ls~N---~Lsg~~i~~~~~~~s~n~~~g~i-P~~l~f~~L~~L~~L~Ls~N~-l~~~iP~~l~~L~~L~~L  520 (876)
T 4ecn_A          446 RLTKLQIIYFANS---PFTYDNIAVDWEDANSDYAKQYE-NEELSWSNLKDLTDVELYNCP-NMTQLPDFLYDLPELQSL  520 (876)
T ss_dssp             GCTTCCEEEEESC---CCCGGGBSSSCSCTTSHHHHHHT-TSCCCGGGCTTCCEEEEESCT-TCCSCCGGGGGCSSCCEE
T ss_pred             cCCCCCEEECcCC---cCCCCcccccccccccccccccC-ChhhhhccCCCCCEEECcCCC-CCccChHHHhCCCCCCEE
Confidence            4567899999998   7777                 36 66666  99999999999655 457889889999999999


Q ss_pred             eccCcc-CCC-CCChhccCCc-------CCcEEEcccCcCCCCCCc--CcCCCCCCCEEEeecCCCccccccccCCCCCC
Q 026163          139 ELPSSR-LTG-IIPSEMGRLR-------NLVRLDLSDNYIGGYIPP--TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKL  207 (242)
Q Consensus       139 ~l~~n~-l~~-~~p~~~~~l~-------~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  207 (242)
                      ++++|+ +++ .+|..++.++       +|++|++++|+++ .+|.  .+.++++|++|++++|+++ .+| .++.+++|
T Consensus       521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L  597 (876)
T 4ecn_A          521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKL  597 (876)
T ss_dssp             ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEE
T ss_pred             ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcc
Confidence            999998 887 7787666555       8999999999998 7887  8888999999999999988 777 88888889


Q ss_pred             cEEEcccCCCCCCCcccccCCcC-CCEEeCcCCCCC
Q 026163          208 KILNLSSNSLVGNIPPTLGHLTQ-LTTLAMSNKVAI  242 (242)
Q Consensus       208 ~~L~L~~N~l~~~~p~~l~~l~~-L~~L~ls~N~lt  242 (242)
                      +.|++++|.++ .+|..+..+++ |++|++++|+++
T Consensus       598 ~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~  632 (876)
T 4ecn_A          598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK  632 (876)
T ss_dssp             SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred             eEEECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence            99999999888 78888888888 888888888764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.80  E-value=9.7e-19  Score=160.24  Aligned_cols=160  Identities=25%  Similarity=0.257  Sum_probs=93.5

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCccc-------------------------ccCchhhhcCCC
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLS-------------------------GSIPSEITALSM  134 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~-------------------------~~~p~~~~~l~~  134 (242)
                      .+++.|+++++   .+.+.+++..+..+++|++|++++|++..                         +.+|..+..+++
T Consensus       405 ~~L~~L~L~~N---~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~  481 (680)
T 1ziw_A          405 GHLEVLDLGLN---EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN  481 (680)
T ss_dssp             TTCCEEECCSS---CCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTT
T ss_pred             CCCCEEeCCCC---cCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCC
Confidence            45666666665   55555544556666666666666444211                         234445555666


Q ss_pred             CCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCC--------CcCcCCCCCCCEEEeecCCCccccccccCCCCC
Q 026163          135 LQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYI--------PPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSK  206 (242)
Q Consensus       135 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--------p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  206 (242)
                      |++|++++|++++..+..+.++++|++|++++|++++..        +..+..+++|++|++++|+++...+..|..+++
T Consensus       482 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~  561 (680)
T 1ziw_A          482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE  561 (680)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccC
Confidence            666666666666555555666666666666666665321        112555666666666666666333334666677


Q ss_pred             CcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163          207 LKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       207 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      |++|++++|++++..+..+..+++|++|++++|+|+
T Consensus       562 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  597 (680)
T 1ziw_A          562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT  597 (680)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred             cceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence            777777777776544455566677777777777653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.79  E-value=7.1e-19  Score=137.15  Aligned_cols=110  Identities=22%  Similarity=0.318  Sum_probs=93.5

Q ss_pred             CCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEE
Q 026163          108 PNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILN  187 (242)
Q Consensus       108 ~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  187 (242)
                      +++++|++++|++  ..+|..+..+++|++|++++|++++..+..|.++++|++|++++|++++..|..|..+++|++|+
T Consensus        31 ~~l~~L~L~~n~i--~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~  108 (193)
T 2wfh_A           31 RDVTELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS  108 (193)
T ss_dssp             TTCCEEECCSSCC--CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcC--chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence            5789999997766  46788888899999999999999977777888999999999999999877777888999999999


Q ss_pred             eecCCCccccccccCCCCCCcEEEcccCCCCC
Q 026163          188 LSSNFLVGNIPLTLCHLSKLKILNLSSNSLVG  219 (242)
Q Consensus       188 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  219 (242)
                      +++|+++...+..|..+++|+.|++++|++..
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A          109 LHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            99999986656668888999999999998864

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.79  E-value=7e-20  Score=136.68  Aligned_cols=131  Identities=24%  Similarity=0.248  Sum_probs=113.6

Q ss_pred             CCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCE
Q 026163          106 CFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKI  185 (242)
Q Consensus       106 ~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  185 (242)
                      ..+++++|++++|++..+.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            3478999999977764367888888999999999999999865  77899999999999999999778888888999999


Q ss_pred             EEeecCCCccc-cccccCCCCCCcEEEcccCCCCCCCc---ccccCCcCCCEEeCcC
Q 026163          186 LNLSSNFLVGN-IPLTLCHLSKLKILNLSSNSLVGNIP---PTLGHLTQLTTLAMSN  238 (242)
Q Consensus       186 L~L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~ls~  238 (242)
                      |++++|++++. .+..+..+++|++|++++|.+++..+   ..+..+++|++|++++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999999963 34789999999999999999997655   5788999999999874

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.79  E-value=5.3e-19  Score=159.91  Aligned_cols=158  Identities=23%  Similarity=0.295  Sum_probs=131.5

Q ss_pred             CeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCC-CCCChhccCCcCC
Q 026163           81 SVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLT-GIIPSEMGRLRNL  159 (242)
Q Consensus        81 ~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~p~~~~~l~~L  159 (242)
                      .++.+++..+   +.....+...+..+++++.++++.|. +.+..+..+..++.+++|++++|++. +..|..+..+++|
T Consensus       421 ~L~~l~l~~~---~~~~~~~~~~~~~l~~l~~l~ls~n~-l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L  496 (635)
T 4g8a_A          421 QLEHLDFQHS---NLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL  496 (635)
T ss_dssp             TCCEEECTTS---EEESTTSSCTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             cccchhhhhc---cccccccccccccccccccccccccc-cccccccccccchhhhhhhhhhcccccccCchhhhhcccc
Confidence            4455555544   44444445567788888888888544 44566677888999999999999754 4567889999999


Q ss_pred             cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCC-cCCCEEeCcC
Q 026163          160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHL-TQLTTLAMSN  238 (242)
Q Consensus       160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~ls~  238 (242)
                      ++|++++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|++++|++++..|..+..+ ++|++|++++
T Consensus       497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~  576 (635)
T 4g8a_A          497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ  576 (635)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred             CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence            999999999998889999999999999999999998888889999999999999999999889999888 6899999999


Q ss_pred             CCCC
Q 026163          239 KVAI  242 (242)
Q Consensus       239 N~lt  242 (242)
                      |+++
T Consensus       577 Np~~  580 (635)
T 4g8a_A          577 NDFA  580 (635)
T ss_dssp             CCBC
T ss_pred             CCCc
Confidence            9874

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.79  E-value=2e-19  Score=150.12  Aligned_cols=154  Identities=24%  Similarity=0.243  Sum_probs=124.4

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccc-cCc--hhhhcCCCCCEEeccCccCCCCCCh----
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSG-SIP--SEITALSMLQTLELPSSRLTGIIPS----  151 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~-~~p--~~~~~l~~L~~L~l~~n~l~~~~p~----  151 (242)
                      ..+++.|+++++   .+.+.. +..+..+++|++|++++|++... .++  ..+..+++|++|++++|+++ .++.    
T Consensus       144 ~~~L~~L~Ls~n---~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~  218 (310)
T 4glp_A          144 KPGLKVLSIAQA---HSPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAA  218 (310)
T ss_dssp             CSCCCEEEEECC---SSCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHH
T ss_pred             ccCCCEEEeeCC---Ccchhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHH
Confidence            457889999888   775554 77889999999999997765321 122  22467899999999999997 3343    


Q ss_pred             hccCCcCCcEEEcccCcCCCCCCcCcCCC---CCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCC
Q 026163          152 EMGRLRNLVRLDLSDNYIGGYIPPTLGRL---SKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHL  228 (242)
Q Consensus       152 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  228 (242)
                      .+..+++|++|++++|++++..|+.+..+   ++|++|++++|+++ .+|..+.  ++|++|++++|++++. |. +..+
T Consensus       219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l  293 (310)
T 4glp_A          219 LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDEL  293 (310)
T ss_dssp             HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSC
T ss_pred             HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhC
Confidence            35788999999999999998878877776   69999999999999 6777764  7999999999999963 43 6788


Q ss_pred             cCCCEEeCcCCCCC
Q 026163          229 TQLTTLAMSNKVAI  242 (242)
Q Consensus       229 ~~L~~L~ls~N~lt  242 (242)
                      ++|++|++++|+|+
T Consensus       294 ~~L~~L~L~~N~l~  307 (310)
T 4glp_A          294 PEVDNLTLDGNPFL  307 (310)
T ss_dssp             CCCSCEECSSTTTS
T ss_pred             CCccEEECcCCCCC
Confidence            99999999999985

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.79  E-value=6.4e-19  Score=148.25  Aligned_cols=157  Identities=24%  Similarity=0.273  Sum_probs=114.5

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCc----------------------hhhhcCCCCC
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIP----------------------SEITALSMLQ  136 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p----------------------~~~~~l~~L~  136 (242)
                      ..+++.|+++++   .+.+.. +..+..+++|++|++++|.+.  .+|                      ..+..+++|+
T Consensus        77 l~~L~~L~L~~n---~l~~~~-~~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~  150 (332)
T 2ft3_A           77 LQHLYALVLVNN---KISKIH-EKAFSPLRKLQKLYISKNHLV--EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMN  150 (332)
T ss_dssp             CTTCCEEECCSS---CCCEEC-GGGSTTCTTCCEEECCSSCCC--SCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCC
T ss_pred             CCCCcEEECCCC---ccCccC-HhHhhCcCCCCEEECCCCcCC--ccCccccccCCEEECCCCccCccCHhHhCCCccCC
Confidence            456777888776   665544 566777777777777755441  233                      2355566666


Q ss_pred             EEeccCccCCC--CCChhccCC--------------------cCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCc
Q 026163          137 TLELPSSRLTG--IIPSEMGRL--------------------RNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLV  194 (242)
Q Consensus       137 ~L~l~~n~l~~--~~p~~~~~l--------------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  194 (242)
                      +|++++|.++.  ..+..+..+                    ++|++|++++|.+++..+..+..+++|++|++++|+++
T Consensus       151 ~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~  230 (332)
T 2ft3_A          151 CIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR  230 (332)
T ss_dssp             EEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC
T ss_pred             EEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence            66666666642  333333322                    34555666666666555677889999999999999999


Q ss_pred             cccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163          195 GNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       195 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      +..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|+|+
T Consensus       231 ~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          231 MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT  277 (332)
T ss_dssp             CCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC
T ss_pred             cCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC
Confidence            877778999999999999999998 78888999999999999999885

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.79  E-value=7.8e-19  Score=157.73  Aligned_cols=157  Identities=23%  Similarity=0.304  Sum_probs=131.8

Q ss_pred             CCCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccc--cCchhhhcCCCCCEEeccCccCCCCCCh-hc
Q 026163           77 NSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSG--SIPSEITALSMLQTLELPSSRLTGIIPS-EM  153 (242)
Q Consensus        77 ~~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~  153 (242)
                      ....+++.|+++++   .+.+.+ +..+..+++|++|++++|++ ++  .+|..+..+++|++|++++|++++.+|. .+
T Consensus       350 ~~l~~L~~L~l~~n---~l~~~~-~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  424 (562)
T 3a79_B          350 PSPSSFTFLNFTQN---VFTDSV-FQGCSTLKRLQTLILQRNGL-KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC  424 (562)
T ss_dssp             SSCCCCCEEECCSS---CCCTTT-TTTCCSCSSCCEEECCSSCC-CBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred             cCCCCceEEECCCC---ccccch-hhhhcccCCCCEEECCCCCc-CCcccchhhhcCCCCCCEEECCCCcCCCccChhhh
Confidence            34567899999988   777766 77889999999999997665 32  2345688999999999999999975665 47


Q ss_pred             cCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCccc-ccCCcCCC
Q 026163          154 GRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPT-LGHLTQLT  232 (242)
Q Consensus       154 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~  232 (242)
                      ..+++|++|++++|++++..|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+
T Consensus       425 ~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~  500 (562)
T 3a79_B          425 AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQ  500 (562)
T ss_dssp             CCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCC
T ss_pred             cCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCC
Confidence            8899999999999999877776654  78999999999999 67877789999999999999999 56655 88999999


Q ss_pred             EEeCcCCCCC
Q 026163          233 TLAMSNKVAI  242 (242)
Q Consensus       233 ~L~ls~N~lt  242 (242)
                      +|++++|+++
T Consensus       501 ~L~l~~N~~~  510 (562)
T 3a79_B          501 YIWLHDNPWD  510 (562)
T ss_dssp             CEECCSCCBC
T ss_pred             EEEecCCCcC
Confidence            9999999874

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.79  E-value=1.6e-18  Score=147.77  Aligned_cols=163  Identities=21%  Similarity=0.170  Sum_probs=130.2

Q ss_pred             CCCcccceEeCCCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhh-cCCCCCEEeccCccC
Q 026163           67 DHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEIT-ALSMLQTLELPSSRL  145 (242)
Q Consensus        67 ~~C~w~gv~c~~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~-~l~~L~~L~l~~n~l  145 (242)
                      ..|- ..-.|..    +.++++++   ++.. + |..+  .+.+++|++++|++ ++..+..+. .+++|++|++++|++
T Consensus        10 ~~Cp-~~C~C~~----~~l~c~~~---~l~~-i-P~~~--~~~l~~L~Ls~N~l-~~l~~~~~~~~l~~L~~L~L~~N~i   76 (361)
T 2xot_A           10 VSCP-ANCLCAS----NILSCSKQ---QLPN-V-PQSL--PSYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHL   76 (361)
T ss_dssp             TTCC-TTCEEET----TEEECCSS---CCSS-C-CSSC--CTTCSEEECCSSCC-CEECTTSSSSCCTTCCEEECCSSCC
T ss_pred             CCCC-CCCEECC----CEEEeCCC---CcCc-c-CccC--CCCCCEEECCCCCC-CccChhhhhhcccccCEEECCCCcC
Confidence            3453 3455642    35777776   5443 4 3333  34689999997665 444445566 899999999999999


Q ss_pred             CCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccc
Q 026163          146 TGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTL  225 (242)
Q Consensus       146 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l  225 (242)
                      ++..+..|.++++|++|++++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|++++|.+++..+..+
T Consensus        77 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~  156 (361)
T 2xot_A           77 NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI  156 (361)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGT
T ss_pred             CccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHh
Confidence            98877889999999999999999997777789999999999999999998888899999999999999999996444445


Q ss_pred             ---cCCcCCCEEeCcCCCCC
Q 026163          226 ---GHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       226 ---~~l~~L~~L~ls~N~lt  242 (242)
                         ..+++|+.|++++|+|+
T Consensus       157 ~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A          157 KDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             C----CTTCCEEECCSSCCC
T ss_pred             cCcccCCcCCEEECCCCCCC
Confidence               57999999999999885

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.79  E-value=2.5e-19  Score=149.45  Aligned_cols=156  Identities=17%  Similarity=0.097  Sum_probs=106.4

Q ss_pred             CeEEEEecccCCCCceeeeCCCCc--CCCCCCCEEEecCCCcccccCc----hhhhcCCCCCEEeccCccCCCCCChhcc
Q 026163           81 SVIRVSLLWYENDNMKGELGRFNF--SCFPNLKSFKIHSNYLLSGSIP----SEITALSMLQTLELPSSRLTGIIPSEMG  154 (242)
Q Consensus        81 ~v~~L~l~~~~~~~~~~~i~~~~~--~~l~~L~~L~l~~~~~~~~~~p----~~~~~l~~L~~L~l~~n~l~~~~p~~~~  154 (242)
                      +++.|+++++   .+.+.. +..+  ..+++|++|++++|.+ .+..+    ..+..+++|++|++++|++++..+..+.
T Consensus        92 ~L~~L~l~~n---~l~~~~-~~~~~~~~~~~L~~L~Ls~n~i-~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  166 (310)
T 4glp_A           92 RLKELTLEDL---KITGTM-PPLPLEATGLALSSLRLRNVSW-ATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR  166 (310)
T ss_dssp             CCCEEEEESC---CCBSCC-CCCSSSCCCBCCSSCEEESCCC-SSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred             ceeEEEeeCC---Eeccch-hhhhhhccCCCCCEEEeecccc-cchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence            4888999888   877777 5555  8889999999996655 33333    2345788999999999999877778888


Q ss_pred             CCcCCcEEEcccCcCCCC--C--CcCcCCCCCCCEEEeecCCCcccccc----ccCCCCCCcEEEcccCCCCCCCccccc
Q 026163          155 RLRNLVRLDLSDNYIGGY--I--PPTLGRLSKLKILNLSSNFLVGNIPL----TLCHLSKLKILNLSSNSLVGNIPPTLG  226 (242)
Q Consensus       155 ~l~~L~~L~Ls~N~l~~~--~--p~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~L~~N~l~~~~p~~l~  226 (242)
                      .+++|++|++++|++.+.  +  +..+..+++|++|++++|+++. ++.    .++.+++|++|++++|.+++..|+.+.
T Consensus       167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~  245 (310)
T 4glp_A          167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP  245 (310)
T ss_dssp             CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS
T ss_pred             cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH
Confidence            899999999999987531  1  2223566667777777776652 222    134556666666666666655555555


Q ss_pred             CC---cCCCEEeCcCCCCC
Q 026163          227 HL---TQLTTLAMSNKVAI  242 (242)
Q Consensus       227 ~l---~~L~~L~ls~N~lt  242 (242)
                      .+   ++|++|++++|+|+
T Consensus       246 ~~~~~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          246 RCMWSSALNSLNLSFAGLE  264 (310)
T ss_dssp             SCCCCTTCCCEECCSSCCC
T ss_pred             hccCcCcCCEEECCCCCCC
Confidence            44   46666666666653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.78  E-value=8.6e-19  Score=136.93  Aligned_cols=132  Identities=20%  Similarity=0.234  Sum_probs=117.1

Q ss_pred             cCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCC
Q 026163          104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKL  183 (242)
Q Consensus       104 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  183 (242)
                      ...+++|++|++++|.+  ..+| .+..+++|++|++++|.++  .+..+..+++|++|++++|++++..+..+..+++|
T Consensus        40 ~~~l~~L~~L~l~~n~i--~~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  114 (197)
T 4ezg_A           40 EAQMNSLTYITLANINV--TDLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL  114 (197)
T ss_dssp             HHHHHTCCEEEEESSCC--SCCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred             hhhcCCccEEeccCCCc--cChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence            35678999999997766  3566 5899999999999999876  33578999999999999999998788899999999


Q ss_pred             CEEEeecCCCccccccccCCCCCCcEEEcccCC-CCCCCcccccCCcCCCEEeCcCCCCC
Q 026163          184 KILNLSSNFLVGNIPLTLCHLSKLKILNLSSNS-LVGNIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       184 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      ++|++++|++++..|..+..+++|++|++++|. ++ .+| .+..+++|++|++++|+++
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~  172 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH  172 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc
Confidence            999999999998888899999999999999998 65 565 6899999999999999875

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=2.3e-18  Score=142.58  Aligned_cols=146  Identities=25%  Similarity=0.338  Sum_probs=118.1

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN  158 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  158 (242)
                      ..+++.|+++++   .+.+.. +  +..+++|++|++++|.+  ..+| .+..+++|++|++++|++++.  ..+..+++
T Consensus        67 l~~L~~L~L~~n---~l~~~~-~--l~~l~~L~~L~l~~n~l--~~~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~  135 (291)
T 1h6t_A           67 LPNVTKLFLNGN---KLTDIK-P--LANLKNLGWLFLDENKV--KDLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQ  135 (291)
T ss_dssp             CTTCCEEECCSS---CCCCCG-G--GTTCTTCCEEECCSSCC--CCGG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTT
T ss_pred             CCCCCEEEccCC---ccCCCc-c--cccCCCCCEEECCCCcC--CCCh-hhccCCCCCEEECCCCcCCCC--hhhcCCCC
Confidence            467888999887   666533 2  88899999999997665  2344 488899999999999998853  46788899


Q ss_pred             CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163          159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN  238 (242)
Q Consensus       159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~  238 (242)
                      |++|++++|++++.  ..+..+++|++|++++|++++..|  +..+++|++|++++|.+++ ++ .+..+++|+.|++++
T Consensus       136 L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~  209 (291)
T 1h6t_A          136 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (291)
T ss_dssp             CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             CCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcC
Confidence            99999999999854  578889999999999999986544  8889999999999999985 44 488899999999999


Q ss_pred             CCC
Q 026163          239 KVA  241 (242)
Q Consensus       239 N~l  241 (242)
                      |++
T Consensus       210 n~i  212 (291)
T 1h6t_A          210 QEC  212 (291)
T ss_dssp             EEE
T ss_pred             Ccc
Confidence            875

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.78  E-value=3.2e-18  Score=131.35  Aligned_cols=115  Identities=21%  Similarity=0.236  Sum_probs=95.5

Q ss_pred             CCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEE
Q 026163          107 FPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKIL  186 (242)
Q Consensus       107 l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  186 (242)
                      .++|++|++++|++ .+..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus        27 ~~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L  105 (177)
T 2o6r_A           27 PSSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL  105 (177)
T ss_dssp             CTTCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEEeCCCcc-cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEE
Confidence            36899999997664 44444457889999999999999997666678899999999999999997777778899999999


Q ss_pred             EeecCCCccccccccCCCCCCcEEEcccCCCCCCCc
Q 026163          187 NLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP  222 (242)
Q Consensus       187 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p  222 (242)
                      ++++|++++..+..+..+++|++|++++|++.+..|
T Consensus       106 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          106 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            999999996656567889999999999999987554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.78  E-value=2.5e-18  Score=143.50  Aligned_cols=146  Identities=24%  Similarity=0.345  Sum_probs=81.4

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN  158 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  158 (242)
                      ..+++.|+++++   .+.+.. +  +..+++|++|++++|.+  ..++ .+..+++|++|++++|++++ ++. +..+++
T Consensus        62 l~~L~~L~L~~n---~i~~~~-~--~~~l~~L~~L~L~~n~l--~~~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~  130 (308)
T 1h6u_A           62 LNNLIGLELKDN---QITDLA-P--LKNLTKITELELSGNPL--KNVS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSN  130 (308)
T ss_dssp             CTTCCEEECCSS---CCCCCG-G--GTTCCSCCEEECCSCCC--SCCG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTT
T ss_pred             cCCCCEEEccCC---cCCCCh-h--HccCCCCCEEEccCCcC--CCch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCC
Confidence            345666666665   444322 1  66666666666665543  2233 35666666666666666663 222 556666


Q ss_pred             CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163          159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN  238 (242)
Q Consensus       159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~  238 (242)
                      |++|++++|++++..+  +..+++|++|++++|++++. +. +..+++|+.|++++|.+++..+  +..+++|++|++++
T Consensus       131 L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~  204 (308)
T 1h6u_A          131 LQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKN  204 (308)
T ss_dssp             CCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTT
T ss_pred             CCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccC
Confidence            6666666666653322  55566666666666666532 22 5555666666666666553222  55555566666655


Q ss_pred             CCC
Q 026163          239 KVA  241 (242)
Q Consensus       239 N~l  241 (242)
                      |++
T Consensus       205 N~l  207 (308)
T 1h6u_A          205 NQI  207 (308)
T ss_dssp             SCC
T ss_pred             Ccc
Confidence            554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=3.1e-18  Score=137.00  Aligned_cols=143  Identities=24%  Similarity=0.224  Sum_probs=123.4

Q ss_pred             cceEeCCCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCc-hhhhcCCCCCEEeccCccCCCCCC
Q 026163           72 TGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIP-SEITALSMLQTLELPSSRLTGIIP  150 (242)
Q Consensus        72 ~gv~c~~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p  150 (242)
                      ..+.-....+++.|+++++   .+.+.. +..+..+++|++|++++|++  +.+| ..|..+++|++|++++|++++..+
T Consensus        32 ~~ip~~~~~~L~~L~Ls~n---~i~~~~-~~~~~~l~~L~~L~L~~N~l--~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~  105 (229)
T 3e6j_A           32 ASVPAGIPTNAQILYLHDN---QITKLE-PGVFDSLINLKELYLGSNQL--GALPVGVFDSLTQLTVLDLGTNQLTVLPS  105 (229)
T ss_dssp             SSCCSCCCTTCSEEECCSS---CCCCCC-TTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CccCCCCCCCCCEEEcCCC---ccCccC-HHHhhCccCCcEEECCCCCC--CCcChhhcccCCCcCEEECCCCcCCccCh
Confidence            3333344578999999998   877765 78899999999999997766  4455 457899999999999999997777


Q ss_pred             hhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCC
Q 026163          151 SEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNI  221 (242)
Q Consensus       151 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~  221 (242)
                      ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++....
T Consensus       106 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          106 AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             TTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             hHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            77899999999999999999 88999999999999999999999776677999999999999999998654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.78  E-value=1.2e-18  Score=154.96  Aligned_cols=134  Identities=25%  Similarity=0.306  Sum_probs=111.5

Q ss_pred             CCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCC--CCChhccCCcCCcEEEcccCcCCCCCCcC-cCCCC
Q 026163          105 SCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTG--IIPSEMGRLRNLVRLDLSDNYIGGYIPPT-LGRLS  181 (242)
Q Consensus       105 ~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~  181 (242)
                      ..+++|++|++++|+ +++.+|..+..+++|++|++++|++++  .+|..+..+++|++|++++|++++.+|.. +..++
T Consensus       321 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~  399 (520)
T 2z7x_B          321 SKISPFLHLDFSNNL-LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK  399 (520)
T ss_dssp             SSCCCCCEEECCSSC-CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred             hhCCcccEEEeECCc-cChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence            677888889998554 455677778888999999999999886  45667888999999999999998756654 78888


Q ss_pred             CCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163          182 KLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       182 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      +|++|++++|++++..|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|+|+
T Consensus       400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~  457 (520)
T 2z7x_B          400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK  457 (520)
T ss_dssp             TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence            999999999999877776654  78999999999998 78887889999999999999875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.78  E-value=4.5e-18  Score=141.88  Aligned_cols=147  Identities=23%  Similarity=0.407  Sum_probs=125.2

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN  158 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  158 (242)
                      ..+++.|++.++   .+.. +  +.+..+++|++|++++|.+  ..++. +..+++|++|++++|++++ ++ .+..+++
T Consensus        40 l~~L~~L~l~~~---~i~~-l--~~~~~l~~L~~L~L~~n~i--~~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~  108 (308)
T 1h6u_A           40 LDGITTLSAFGT---GVTT-I--EGVQYLNNLIGLELKDNQI--TDLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQS  108 (308)
T ss_dssp             HHTCCEEECTTS---CCCC-C--TTGGGCTTCCEEECCSSCC--CCCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTT
T ss_pred             cCCcCEEEeeCC---CccC-c--hhhhccCCCCEEEccCCcC--CCChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCC
Confidence            457899999887   5554 3  3688999999999997766  34555 8999999999999999985 44 6899999


Q ss_pred             CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163          159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN  238 (242)
Q Consensus       159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~  238 (242)
                      |++|++++|++++ ++. +..+++|++|++++|++++..+  +..+++|++|++++|.+++ ++. +..+++|++|++++
T Consensus       109 L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~  182 (308)
T 1h6u_A          109 IKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADD  182 (308)
T ss_dssp             CCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCS
T ss_pred             CCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCC
Confidence            9999999999985 443 8999999999999999996433  8899999999999999985 444 89999999999999


Q ss_pred             CCCC
Q 026163          239 KVAI  242 (242)
Q Consensus       239 N~lt  242 (242)
                      |+++
T Consensus       183 n~l~  186 (308)
T 1h6u_A          183 NKIS  186 (308)
T ss_dssp             SCCC
T ss_pred             CccC
Confidence            9875

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=1.8e-18  Score=143.23  Aligned_cols=147  Identities=26%  Similarity=0.338  Sum_probs=123.9

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN  158 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  158 (242)
                      ..+++.|++.++   .+.. +  +.+..+++|++|++++|++  ..++. +..+++|++|++++|++++ + ..+..+++
T Consensus        45 l~~L~~L~l~~~---~i~~-~--~~~~~l~~L~~L~L~~n~l--~~~~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~  113 (291)
T 1h6t_A           45 LNSIDQIIANNS---DIKS-V--QGIQYLPNVTKLFLNGNKL--TDIKP-LANLKNLGWLFLDENKVKD-L-SSLKDLKK  113 (291)
T ss_dssp             HHTCCEEECTTS---CCCC-C--TTGGGCTTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCC-G-GGGTTCTT
T ss_pred             cCcccEEEccCC---Cccc-C--hhHhcCCCCCEEEccCCcc--CCCcc-cccCCCCCEEECCCCcCCC-C-hhhccCCC
Confidence            456889999887   5543 2  4588899999999997765  34555 8899999999999999985 3 34899999


Q ss_pred             CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163          159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN  238 (242)
Q Consensus       159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~  238 (242)
                      |++|++++|++++.  +.+..+++|++|++++|++++.  ..+..+++|++|++++|.+++..+  +..+++|++|++++
T Consensus       114 L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~  187 (291)
T 1h6t_A          114 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK  187 (291)
T ss_dssp             CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCC
Confidence            99999999999853  5688999999999999999964  578899999999999999986544  89999999999999


Q ss_pred             CCCC
Q 026163          239 KVAI  242 (242)
Q Consensus       239 N~lt  242 (242)
                      |+|+
T Consensus       188 N~i~  191 (291)
T 1h6t_A          188 NHIS  191 (291)
T ss_dssp             SCCC
T ss_pred             CcCC
Confidence            9875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.78  E-value=1.5e-18  Score=162.83  Aligned_cols=160  Identities=25%  Similarity=0.281  Sum_probs=141.1

Q ss_pred             CCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChh--ccC
Q 026163           78 SAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSE--MGR  155 (242)
Q Consensus        78 ~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~--~~~  155 (242)
                      ...+++.|+++++   ...+.+++..|..+++|++|++++|++ .+..|..|.++++|++|++++|.+++.+|..  +.+
T Consensus        46 ~l~~L~~LdLs~n---~~~~~i~~~~f~~L~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  121 (844)
T 3j0a_A           46 FLEQLQLLELGSQ---YTPLTIDKEAFRNLPNLRILDLGSSKI-YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN  121 (844)
T ss_dssp             SCCSCSEEEECTT---CCCCEECTTTTSSCTTCCEEECTTCCC-CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred             ccccCeEEeCCCC---CCccccCHHHhcCCCCCCEEECCCCcC-cccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence            4567999999998   788888788999999999999996654 5566888999999999999999999877665  899


Q ss_pred             CcCCcEEEcccCcCCCCCC-cCcCCCCCCCEEEeecCCCccccccccCCC--CCCcEEEcccCCCCCCCcccccCCcC--
Q 026163          156 LRNLVRLDLSDNYIGGYIP-PTLGRLSKLKILNLSSNFLVGNIPLTLCHL--SKLKILNLSSNSLVGNIPPTLGHLTQ--  230 (242)
Q Consensus       156 l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l--~~L~~L~L~~N~l~~~~p~~l~~l~~--  230 (242)
                      +++|++|++++|.+++..+ ..++++++|++|++++|.+++..+..+..+  ++|+.|++++|.+.+..|..++.+++  
T Consensus       122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~  201 (844)
T 3j0a_A          122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF  201 (844)
T ss_dssp             CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTT
T ss_pred             cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcc
Confidence            9999999999999987655 579999999999999999998888888877  89999999999999888877776665  


Q ss_pred             ----CCEEeCcCCCC
Q 026163          231 ----LTTLAMSNKVA  241 (242)
Q Consensus       231 ----L~~L~ls~N~l  241 (242)
                          |++|++++|.+
T Consensus       202 ~~~~L~~L~Ls~n~l  216 (844)
T 3j0a_A          202 RNMVLEILDVSGNGW  216 (844)
T ss_dssp             TTCCBSEEBCSSCCS
T ss_pred             ccCceeEEecCCCcC
Confidence                99999999965

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.77  E-value=2.5e-18  Score=154.50  Aligned_cols=134  Identities=26%  Similarity=0.338  Sum_probs=114.5

Q ss_pred             CCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCC--CChhccCCcCCcEEEcccCcCCCCCCc-CcCCCC
Q 026163          105 SCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGI--IPSEMGRLRNLVRLDLSDNYIGGYIPP-TLGRLS  181 (242)
Q Consensus       105 ~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~  181 (242)
                      ..+++|++|++++|. +++.+|..+.++++|++|++++|++++.  +|..+.++++|++|++++|++++.+|. .+..++
T Consensus       350 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~  428 (562)
T 3a79_B          350 PSPSSFTFLNFTQNV-FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE  428 (562)
T ss_dssp             SSCCCCCEEECCSSC-CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred             cCCCCceEEECCCCc-cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence            678899999999655 4556788889999999999999999863  346688999999999999999875665 488899


Q ss_pred             CCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163          182 KLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       182 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      +|++|++++|++++..|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|+|+
T Consensus       429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~  486 (562)
T 3a79_B          429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK  486 (562)
T ss_dssp             TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC
T ss_pred             cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC
Confidence            999999999999887776654  78999999999998 68877889999999999999985

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.77  E-value=2.8e-18  Score=133.61  Aligned_cols=108  Identities=29%  Similarity=0.375  Sum_probs=57.5

Q ss_pred             CCCEEeccCccCCCCCCh-hccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEc
Q 026163          134 MLQTLELPSSRLTGIIPS-EMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNL  212 (242)
Q Consensus       134 ~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  212 (242)
                      ++++|++++|++++..+. .+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..|..+++|++|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            455555555555533332 2455555555555555555544555555555555555555555444444555555555555


Q ss_pred             ccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163          213 SSNSLVGNIPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       213 ~~N~l~~~~p~~l~~l~~L~~L~ls~N~l  241 (242)
                      ++|++++..|..+..+++|++|++++|++
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            55555555555555555555555555544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.77  E-value=1.3e-18  Score=155.42  Aligned_cols=159  Identities=17%  Similarity=0.114  Sum_probs=130.8

Q ss_pred             CCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCC-CCChhccCC
Q 026163           78 SAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTG-IIPSEMGRL  156 (242)
Q Consensus        78 ~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l  156 (242)
                      ...+++.|+++++   .+.+.. +..|..+++|++|++++|.+ .+..|..+.++++|++|++++|++++ ..|..+.++
T Consensus        48 ~l~~L~~L~Ls~n---~i~~~~-~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l  122 (549)
T 2z81_A           48 ACANLQVLILKSS---RINTIE-GDAFYSLGSLEHLDLSDNHL-SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL  122 (549)
T ss_dssp             SCTTCCEEECTTS---CCCEEC-TTTTTTCTTCCEEECTTSCC-CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred             cCCcccEEECCCC---CcCccC-hhhccccccCCEEECCCCcc-CccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence            3568999999998   777655 78899999999999996654 45555669999999999999999986 356789999


Q ss_pred             cCCcEEEcccCcCCCCCC-cCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCccc-ccCCcCCCEE
Q 026163          157 RNLVRLDLSDNYIGGYIP-PTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPT-LGHLTQLTTL  234 (242)
Q Consensus       157 ~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L  234 (242)
                      ++|++|++++|++.+.+| ..+.++++|++|++++|++++..|..++.+++|++|++++|.+. .+|.. +..+++|++|
T Consensus       123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L  201 (549)
T 2z81_A          123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYL  201 (549)
T ss_dssp             TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEE
T ss_pred             CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEE
Confidence            999999999999544554 67999999999999999999988999988888888888888876 34433 3567788888


Q ss_pred             eCcCCCCC
Q 026163          235 AMSNKVAI  242 (242)
Q Consensus       235 ~ls~N~lt  242 (242)
                      ++++|+++
T Consensus       202 ~L~~n~l~  209 (549)
T 2z81_A          202 ELRDTNLA  209 (549)
T ss_dssp             EEESCBCT
T ss_pred             EccCCccc
Confidence            88887763

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.76  E-value=3.9e-18  Score=143.99  Aligned_cols=130  Identities=27%  Similarity=0.361  Sum_probs=92.5

Q ss_pred             cCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCC
Q 026163          104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKL  183 (242)
Q Consensus       104 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  183 (242)
                      +..+++|++|++++|.+  ..++. +..+++|++|++++|.+++.  ..+..+++|++|++++|++++.  +.+..+++|
T Consensus       217 ~~~~~~L~~L~l~~n~l--~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L  289 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNKI--TDLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQL  289 (347)
T ss_dssp             GGGCTTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred             hhcCCcCCEEEccCCcc--CCCcc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCC
Confidence            55667777777775554  23343 66777777777777777642  4567777888888888877743  356777888


Q ss_pred             CEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163          184 KILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       184 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      ++|++++|++++..|..+..+++|++|++++|++++..|  +..+++|++|++++|+|+
T Consensus       290 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             SEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            888888888877777777888888888888888876544  777888888888888774

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.76  E-value=4.4e-18  Score=138.90  Aligned_cols=145  Identities=24%  Similarity=0.331  Sum_probs=121.9

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN  158 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  158 (242)
                      ..+++.|+++++   ++.. +  +.+..+++|++|++++|++  ..++. +..+++|++|++++|++++ +|.. .. ++
T Consensus        40 l~~L~~L~l~~n---~i~~-l--~~l~~l~~L~~L~L~~N~i--~~~~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~  107 (263)
T 1xeu_A           40 LSGVQNFNGDNS---NIQS-L--AGMQFFTNLKELHLSHNQI--SDLSP-LKDLTKLEELSVNRNRLKN-LNGI-PS-AC  107 (263)
T ss_dssp             HTTCSEEECTTS---CCCC-C--TTGGGCTTCCEEECCSSCC--CCCGG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SS
T ss_pred             cCcCcEEECcCC---Cccc-c--hHHhhCCCCCEEECCCCcc--CCChh-hccCCCCCEEECCCCccCC-cCcc-cc-Cc
Confidence            467889999987   6553 4  3788999999999997765  34555 8999999999999999985 4443 33 89


Q ss_pred             CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163          159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN  238 (242)
Q Consensus       159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~  238 (242)
                      |++|++++|++++ + +.+..+++|++|++++|++++. + .+..+++|++|++++|.+++.  ..+..+++|+.|++++
T Consensus       108 L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~  181 (263)
T 1xeu_A          108 LSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTG  181 (263)
T ss_dssp             CCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEE
T ss_pred             ccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCC
Confidence            9999999999985 3 3689999999999999999964 4 688999999999999999865  6788999999999999


Q ss_pred             CCC
Q 026163          239 KVA  241 (242)
Q Consensus       239 N~l  241 (242)
                      |++
T Consensus       182 N~~  184 (263)
T 1xeu_A          182 QKC  184 (263)
T ss_dssp             EEE
T ss_pred             Ccc
Confidence            976

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.75  E-value=1.2e-18  Score=161.00  Aligned_cols=110  Identities=25%  Similarity=0.354  Sum_probs=52.4

Q ss_pred             hhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCC
Q 026163          128 EITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKL  207 (242)
Q Consensus       128 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  207 (242)
                      .+..++.|++|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..+.++++|++|+|++|.|+ .+|..++.+++|
T Consensus       219 ~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L  295 (727)
T 4b8c_D          219 SKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL  295 (727)
T ss_dssp             ---CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred             hhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence            3444445555555555544 34444444455555555555554 44444444555555555555544 344444445555


Q ss_pred             cEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163          208 KILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       208 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l  241 (242)
                      ++|+|++|.++ .+|..++.+++|++|+|++|+|
T Consensus       296 ~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          296 KYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             SEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCC
T ss_pred             CEEECCCCCCC-ccChhhhcCCCccEEeCCCCcc
Confidence            55555555444 3444444555555555555544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.75  E-value=5.8e-18  Score=152.02  Aligned_cols=149  Identities=23%  Similarity=0.324  Sum_probs=106.9

Q ss_pred             CCCCC-----cccce-EeCCCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEE
Q 026163           65 TSDHC-----KWTGI-RCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTL  138 (242)
Q Consensus        65 ~~~~C-----~w~gv-~c~~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L  138 (242)
                      +.++|     .|.|+ .|. .++++.|+++++   ++.+ + +..+  +++|++|++++|++  ..+|   ..+++|++|
T Consensus        39 ~~~~~~~~~~~~~~l~~C~-~~~L~~L~Ls~n---~L~~-l-p~~l--~~~L~~L~Ls~N~l--~~ip---~~l~~L~~L  105 (571)
T 3cvr_A           39 QALPGENRNEAVSLLKECL-INQFSELQLNRL---NLSS-L-PDNL--PPQITVLEITQNAL--ISLP---ELPASLEYL  105 (571)
T ss_dssp             TCCTTCCHHHHHHHHHHHH-HTTCSEEECCSS---CCSC-C-CSCC--CTTCSEEECCSSCC--SCCC---CCCTTCCEE
T ss_pred             cCCccccccchhhhccccc-cCCccEEEeCCC---CCCc-c-CHhH--cCCCCEEECcCCCC--cccc---cccCCCCEE
Confidence            45667     69999 675 357999999988   7665 5 3333  37889999987665  3567   457888888


Q ss_pred             eccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCC
Q 026163          139 ELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV  218 (242)
Q Consensus       139 ~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  218 (242)
                      ++++|++++ +|. +.+  +|++|++++|++++ +|.   .+++|++|++++|++++ +|.   .+++|++|++++|.++
T Consensus       106 ~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~  173 (571)
T 3cvr_A          106 DACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT  173 (571)
T ss_dssp             ECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred             EccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence            888888885 666 554  78888888888875 555   56777888888887774 554   4567777777777777


Q ss_pred             CCCcccccCCcCCCEEeCcCCCCC
Q 026163          219 GNIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       219 ~~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      + +|. +.  ++|++|++++|+|+
T Consensus       174 ~-lp~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          174 F-LPE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             C-CCC-CC--TTCCEEECCSSCCS
T ss_pred             C-cch-hh--CCCCEEECcCCCCC
Confidence            5 555 44  67777777777664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.75  E-value=3.8e-18  Score=129.76  Aligned_cols=137  Identities=23%  Similarity=0.214  Sum_probs=117.1

Q ss_pred             CCCeEEEEecccCCCCce-eeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCc
Q 026163           79 AGSVIRVSLLWYENDNMK-GELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLR  157 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~-~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~  157 (242)
                      ..+++.|+++++   .+. +.+ +..+..+++|++|++++|.+ ++ + ..+..+++|++|++++|++++.+|..+..++
T Consensus        23 ~~~L~~L~l~~n---~l~~~~i-~~~~~~l~~L~~L~l~~n~l-~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   95 (168)
T 2ell_A           23 PAAVRELVLDNC---KSNDGKI-EGLTAEFVNLEFLSLINVGL-IS-V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP   95 (168)
T ss_dssp             TTSCSEEECCSC---BCBTTBC-SSCCGGGGGCCEEEEESSCC-CC-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred             cccCCEEECCCC---CCChhhH-HHHHHhCCCCCEEeCcCCCC-CC-h-hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence            367999999998   777 677 66789999999999997765 33 3 5688999999999999999987888888899


Q ss_pred             CCcEEEcccCcCCCCC-CcCcCCCCCCCEEEeecCCCccccc---cccCCCCCCcEEEcccCCCCCCCcc
Q 026163          158 NLVRLDLSDNYIGGYI-PPTLGRLSKLKILNLSSNFLVGNIP---LTLCHLSKLKILNLSSNSLVGNIPP  223 (242)
Q Consensus       158 ~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~L~~N~l~~~~p~  223 (242)
                      +|++|++++|++++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+. .+|+
T Consensus        96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A           96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            9999999999998542 2789999999999999999996544   47899999999999999987 4554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.75  E-value=3.8e-18  Score=142.77  Aligned_cols=132  Identities=21%  Similarity=0.158  Sum_probs=108.4

Q ss_pred             CCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhc-cCCcCCcEEEcccCcCCCCCCcCcCCCCCCC
Q 026163          106 CFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEM-GRLRNLVRLDLSDNYIGGYIPPTLGRLSKLK  184 (242)
Q Consensus       106 ~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  184 (242)
                      .+++|++|++++|++ ++..+..+..+++|++|++++|++++..+..+ ..+++|++|++++|.+++. + ....+++|+
T Consensus       118 ~~~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~  194 (317)
T 3o53_A          118 RGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLK  194 (317)
T ss_dssp             CCSSCEEEECCSSCC-CSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCC
T ss_pred             ccCCCCEEECCCCCC-CCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCC
Confidence            367888999986654 44445568889999999999999997766666 4789999999999999844 3 334589999


Q ss_pred             EEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163          185 ILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       185 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      +|++++|++++ +|..+..+++|++|++++|.++ .+|..+..+++|++|++++|+++
T Consensus       195 ~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          195 TLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             EEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             EEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence            99999999995 4556889999999999999998 57888899999999999999874

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.75  E-value=1.5e-18  Score=153.62  Aligned_cols=146  Identities=18%  Similarity=0.165  Sum_probs=100.3

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL  159 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  159 (242)
                      .+++.|+++++   .+.+.. +  +..+++|++|++++|.+ + .+|    ..++|++|++++|.+++..+   ..+++|
T Consensus        58 ~~L~~L~Ls~N---~l~~~~-~--l~~l~~L~~L~Ls~N~l-~-~l~----~~~~L~~L~L~~N~l~~~~~---~~l~~L  122 (487)
T 3oja_A           58 TKLELLNLSSN---VLYETL-D--LESLSTLRTLDLNNNYV-Q-ELL----VGPSIETLHAANNNISRVSC---SRGQGK  122 (487)
T ss_dssp             TTCCEEECTTS---CCEEEE-E--CTTCTTCCEEECCSSEE-E-EEE----ECTTCCEEECCSSCCCCEEE---CCCSSC
T ss_pred             CCCCEEEeeCC---CCCCCc-c--cccCCCCCEEEecCCcC-C-CCC----CCCCcCEEECcCCcCCCCCc---cccCCC
Confidence            45555555555   555443 1  55555666666654433 1 122    22556666666666664433   245778


Q ss_pred             cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccC-CCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163          160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLC-HLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN  238 (242)
Q Consensus       160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~  238 (242)
                      ++|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++. |. ...+++|++|++++
T Consensus       123 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~  200 (487)
T 3oja_A          123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSS  200 (487)
T ss_dssp             EEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCS
T ss_pred             CEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCC
Confidence            8888888888877787888888899999999998887777765 688899999999988854 32 44688899999999


Q ss_pred             CCCC
Q 026163          239 KVAI  242 (242)
Q Consensus       239 N~lt  242 (242)
                      |.|+
T Consensus       201 N~l~  204 (487)
T 3oja_A          201 NKLA  204 (487)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            8875

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.74  E-value=6.2e-18  Score=149.60  Aligned_cols=132  Identities=21%  Similarity=0.143  Sum_probs=108.7

Q ss_pred             CCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhcc-CCcCCcEEEcccCcCCCCCCcCcCCCCCCC
Q 026163          106 CFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMG-RLRNLVRLDLSDNYIGGYIPPTLGRLSKLK  184 (242)
Q Consensus       106 ~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  184 (242)
                      .+++|++|++++|. +++..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++. | ....+++|+
T Consensus       118 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~  194 (487)
T 3oja_A          118 RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLK  194 (487)
T ss_dssp             CCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCC
T ss_pred             ccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCC
Confidence            46788889998555 4455566788899999999999999987787775 789999999999999855 3 344688999


Q ss_pred             EEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163          185 ILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       185 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      +|++++|.+++. |..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|+++
T Consensus       195 ~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          195 TLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             EEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred             EEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence            999999999964 4458889999999999999985 7777889999999999999874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.74  E-value=2.5e-17  Score=126.33  Aligned_cols=109  Identities=28%  Similarity=0.300  Sum_probs=68.1

Q ss_pred             CCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEc
Q 026163          133 SMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNL  212 (242)
Q Consensus       133 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  212 (242)
                      ++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            45666666666666544455566666666666666666444445566666666666666666554445566666666666


Q ss_pred             ccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163          213 SSNSLVGNIPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       213 ~~N~l~~~~p~~l~~l~~L~~L~ls~N~l  241 (242)
                      ++|.+++..+..+..+++|++|++++|++
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence            66666644444455666666666666665

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=1.6e-17  Score=150.34  Aligned_cols=146  Identities=25%  Similarity=0.341  Sum_probs=123.4

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN  158 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  158 (242)
                      ..+++.|+++++   .+.+.. +  +..+++|++|++++|.+  ..+| .+..+++|++|++++|++++ + ..+..+++
T Consensus        64 l~~L~~L~Ls~N---~l~~~~-~--l~~l~~L~~L~Ls~N~l--~~l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~  132 (605)
T 1m9s_A           64 LPNVTKLFLNGN---KLTDIK-P--LTNLKNLGWLFLDENKI--KDLS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQ  132 (605)
T ss_dssp             CTTCCEEECTTS---CCCCCG-G--GGGCTTCCEEECCSSCC--CCCT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTT
T ss_pred             CCCCCEEEeeCC---CCCCCh-h--hccCCCCCEEECcCCCC--CCCh-hhccCCCCCEEEecCCCCCC-C-ccccCCCc
Confidence            567899999988   766643 2  88999999999997765  2344 58889999999999999985 3 45888999


Q ss_pred             CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163          159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN  238 (242)
Q Consensus       159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~  238 (242)
                      |+.|+|++|++++.  ..+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|.+++ + +.+..+++|+.|+|++
T Consensus       133 L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~  206 (605)
T 1m9s_A          133 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFS  206 (605)
T ss_dssp             CSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCS
T ss_pred             cCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccC
Confidence            99999999999854  678899999999999999997655  8899999999999999985 3 4588999999999999


Q ss_pred             CCC
Q 026163          239 KVA  241 (242)
Q Consensus       239 N~l  241 (242)
                      |++
T Consensus       207 N~l  209 (605)
T 1m9s_A          207 QEC  209 (605)
T ss_dssp             EEE
T ss_pred             CcC
Confidence            976

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=2.1e-17  Score=149.65  Aligned_cols=147  Identities=27%  Similarity=0.357  Sum_probs=125.5

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN  158 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  158 (242)
                      ..+++.|++.++   .+.. +  +.+..+++|++|+|++|.+ . .++. +..+++|++|+|++|.+++ +| .+..+++
T Consensus        42 L~~L~~L~l~~n---~i~~-l--~~l~~l~~L~~L~Ls~N~l-~-~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~  110 (605)
T 1m9s_A           42 LNSIDQIIANNS---DIKS-V--QGIQYLPNVTKLFLNGNKL-T-DIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKK  110 (605)
T ss_dssp             HTTCCCCBCTTC---CCCC-C--TTGGGCTTCCEEECTTSCC-C-CCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTT
T ss_pred             CCCCCEEECcCC---CCCC-C--hHHccCCCCCEEEeeCCCC-C-CChh-hccCCCCCEEECcCCCCCC-Ch-hhccCCC
Confidence            456788888877   5543 3  4688999999999997765 3 3554 8999999999999999985 44 6899999


Q ss_pred             CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163          159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN  238 (242)
Q Consensus       159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~  238 (242)
                      |++|++++|++++ + +.+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.+..|  +..+++|+.|+|++
T Consensus       111 L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~  184 (605)
T 1m9s_A          111 LKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK  184 (605)
T ss_dssp             CCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcC
Confidence            9999999999985 3 4688999999999999999964  578999999999999999997655  89999999999999


Q ss_pred             CCCC
Q 026163          239 KVAI  242 (242)
Q Consensus       239 N~lt  242 (242)
                      |+|+
T Consensus       185 N~i~  188 (605)
T 1m9s_A          185 NHIS  188 (605)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            9875

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.73  E-value=3.9e-17  Score=127.26  Aligned_cols=125  Identities=25%  Similarity=0.330  Sum_probs=102.3

Q ss_pred             EEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecC
Q 026163          112 SFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSN  191 (242)
Q Consensus       112 ~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  191 (242)
                      +++++++++  ..+|..+  .++|++|++++|+++ .+|..+.++++|++|++++|++++..+..|..+++|++|++++|
T Consensus        14 ~l~~~~~~l--~~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           14 VVRCSNKGL--KVLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             EEECTTSCC--SSCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEEcCCCCC--CcCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            445554443  3455433  257899999999998 67788899999999999999999777788999999999999999


Q ss_pred             CCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163          192 FLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       192 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l  241 (242)
                      ++++..|..|..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            99987777889999999999999999866556788899999999999976

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.73  E-value=3.4e-18  Score=131.13  Aligned_cols=134  Identities=17%  Similarity=0.175  Sum_probs=105.6

Q ss_pred             CCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCC
Q 026163          102 FNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLS  181 (242)
Q Consensus       102 ~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  181 (242)
                      ..+..+++|++|++++|++  ..+|......++|++|++++|++++.  ..+..+++|++|++++|++++..+..+..++
T Consensus        13 ~~~~~~~~L~~L~l~~n~l--~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   88 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP   88 (176)
T ss_dssp             CEEECTTSCEEEECTTSCC--CSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             HhcCCcCCceEEEeeCCCC--chhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence            3456678899999997765  24555333344999999999999864  5788899999999999999854444458899


Q ss_pred             CCCEEEeecCCCcccccc--ccCCCCCCcEEEcccCCCCCCCccc----ccCCcCCCEEeCcCCCC
Q 026163          182 KLKILNLSSNFLVGNIPL--TLCHLSKLKILNLSSNSLVGNIPPT----LGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       182 ~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~ls~N~l  241 (242)
                      +|++|++++|+++ .+|.  .+..+++|++|++++|+++ .+|..    +..+++|+.||+++|.+
T Consensus        89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            9999999999997 4565  7888999999999999998 45653    88899999999988864

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.73  E-value=4e-17  Score=137.82  Aligned_cols=130  Identities=28%  Similarity=0.411  Sum_probs=101.0

Q ss_pred             cCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCC
Q 026163          104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKL  183 (242)
Q Consensus       104 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  183 (242)
                      +..+++|+++++++|.+ . .++. +..+++|++|++++|++++. +. +..+++|++|++++|.+++.  +.+..+++|
T Consensus       195 ~~~l~~L~~L~l~~n~l-~-~~~~-~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L  267 (347)
T 4fmz_A          195 LASLTSLHYFTAYVNQI-T-DITP-VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI--NAVKDLTKL  267 (347)
T ss_dssp             GGGCTTCCEEECCSSCC-C-CCGG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred             ccCCCccceeecccCCC-C-CCch-hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC--hhHhcCCCc
Confidence            55566666666664443 1 2222 67788888888888888744 33 78888899999988888743  467888899


Q ss_pred             CEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163          184 KILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       184 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      ++|++++|++++.  ..+..+++|++|++++|.+++..+..+..+++|++|++++|+++
T Consensus       268 ~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          268 KMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT  324 (347)
T ss_dssp             CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred             CEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence            9999999988853  35788899999999999998888888899999999999999875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.72  E-value=2e-18  Score=144.45  Aligned_cols=161  Identities=17%  Similarity=0.214  Sum_probs=130.4

Q ss_pred             CcccceEeCCCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhh-hcCCCCCEEeccCccCCC
Q 026163           69 CKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTG  147 (242)
Q Consensus        69 C~w~gv~c~~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~-~~l~~L~~L~l~~n~l~~  147 (242)
                      |...++.+....+++.|+++++   .+.+.. +..+..+++|++|++++|.+ .+..+..+ ..+++|++|++++|++++
T Consensus       109 n~l~~~~~~~~~~L~~L~l~~N---~l~~~~-~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~l~~L~~L~L~~N~l~~  183 (317)
T 3o53_A          109 NNISRVSCSRGQGKKNIYLANN---KITMLR-DLDEGCRSRVQYLDLKLNEI-DTVNFAELAASSDTLEHLNLQYNFIYD  183 (317)
T ss_dssp             SCCSEEEECCCSSCEEEECCSS---CCCSGG-GBCTGGGSSEEEEECTTSCC-CEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CccCCcCccccCCCCEEECCCC---CCCCcc-chhhhccCCCCEEECCCCCC-CcccHHHHhhccCcCCEEECCCCcCcc
Confidence            3444555555567888888877   666544 66788899999999997655 44445555 478999999999999985


Q ss_pred             CCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCC-CCCccccc
Q 026163          148 IIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV-GNIPPTLG  226 (242)
Q Consensus       148 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~p~~l~  226 (242)
                      . +. ...+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++. +.+|..+.
T Consensus       184 ~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~  259 (317)
T 3o53_A          184 V-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (317)
T ss_dssp             E-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred             c-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence            4 33 3458999999999999994 5566999999999999999999 57888999999999999999998 67788888


Q ss_pred             CCcCCCEEeCcC
Q 026163          227 HLTQLTTLAMSN  238 (242)
Q Consensus       227 ~l~~L~~L~ls~  238 (242)
                      .+++|+.+++++
T Consensus       260 ~~~~L~~l~l~~  271 (317)
T 3o53_A          260 KNQRVQTVAKQT  271 (317)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             ccccceEEECCC
Confidence            999998888763

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.72  E-value=4e-17  Score=143.42  Aligned_cols=127  Identities=29%  Similarity=0.445  Sum_probs=74.2

Q ss_pred             cCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCC
Q 026163          104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKL  183 (242)
Q Consensus       104 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  183 (242)
                      +..+++|++|++++|.+ . .++. +..+++|++|++++|++++..+  +..+++|++|++++|++++..|  +..+++|
T Consensus       261 ~~~l~~L~~L~l~~n~l-~-~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L  333 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQI-S-NISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKL  333 (466)
T ss_dssp             GTTCTTCSEEECCSSCC-C-CCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred             hhcCCCCCEEECCCCcc-C-cccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccC
Confidence            45555555555554433 1 2232 5555666666666666654322  5556666666666666654433  5566666


Q ss_pred             CEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163          184 KILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       184 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l  241 (242)
                      ++|++++|++++.  ..+..+++|++|++++|++++..|  +..+++|++|++++|++
T Consensus       334 ~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~  387 (466)
T 1o6v_A          334 QRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW  387 (466)
T ss_dssp             CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEE
T ss_pred             CEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcc
Confidence            6666666666643  356666677777777777765554  66667777777776654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.72  E-value=2e-18  Score=159.54  Aligned_cols=121  Identities=25%  Similarity=0.322  Sum_probs=107.1

Q ss_pred             CCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCC
Q 026163          101 RFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRL  180 (242)
Q Consensus       101 ~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  180 (242)
                      +..+..++.|++|+|++|.+  ..+|..+..+++|++|+|++|.++ .+|..|+++++|++|+|++|.|+ .+|..+..+
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l--~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQI--FNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             -----CCCCCCEEECTTSCC--SCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             hhhhccCCCCcEEECCCCCC--CCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            56688899999999997776  368888889999999999999999 88999999999999999999999 889999999


Q ss_pred             CCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCccccc
Q 026163          181 SKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLG  226 (242)
Q Consensus       181 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~  226 (242)
                      ++|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|..+.
T Consensus       293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~  337 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILT  337 (727)
T ss_dssp             TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred             CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence            99999999999998 7888899999999999999999987776653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.71  E-value=6.7e-17  Score=137.05  Aligned_cols=167  Identities=23%  Similarity=0.230  Sum_probs=122.4

Q ss_pred             CcccceEeCC----------CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCc-hhhhcCCCCCE
Q 026163           69 CKWTGIRCNS----------AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIP-SEITALSMLQT  137 (242)
Q Consensus        69 C~w~gv~c~~----------~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p-~~~~~l~~L~~  137 (242)
                      |.+..|.|+.          ..++++|+++++   .+. .+++..|.++++|++|++++|++.+ .+| ..|.+++++++
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N---~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~-~i~~~~f~~L~~l~~   83 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLT---KLR-VIQKGAFSGFGDLEKIEISQNDVLE-VIEADVFSNLPKLHE   83 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEESC---CCS-EECTTSSTTCTTCCEEEEECCTTCC-EECTTSBCSCTTCCE
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccCC---cCC-CcCHHHHcCCCCCCEEECcCCCCCC-ccChhHhhcchhhhh
Confidence            6788888942          246899999997   766 5656789999999999999776543 444 35778888765


Q ss_pred             -EeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCc-------------------------CCC-CCCCEEEeec
Q 026163          138 -LELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTL-------------------------GRL-SKLKILNLSS  190 (242)
Q Consensus       138 -L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-------------------------~~l-~~L~~L~L~~  190 (242)
                       +.+..|+++...|..|..+++|++|++++|+++...+..+                         ..+ ..++.|++++
T Consensus        84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~  163 (350)
T 4ay9_X           84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK  163 (350)
T ss_dssp             EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred             hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence             5666788887778888899999999999998874433222                         222 2467778888


Q ss_pred             CCCccccccccCCCCCCcEEEccc-CCCCCCCc-ccccCCcCCCEEeCcCCCCC
Q 026163          191 NFLVGNIPLTLCHLSKLKILNLSS-NSLVGNIP-PTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       191 N~l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p-~~l~~l~~L~~L~ls~N~lt  242 (242)
                      |+++. +|.......+|+.+++.+ |.++ .+| ..+..+++|++|++++|+|+
T Consensus       164 N~i~~-i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          164 NGIQE-IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             SCCCE-ECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC
T ss_pred             ccccC-CChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC
Confidence            88874 444444556788888875 5555 455 56789999999999999875

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=7.2e-17  Score=131.67  Aligned_cols=128  Identities=21%  Similarity=0.320  Sum_probs=110.0

Q ss_pred             CcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCC
Q 026163          103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSK  182 (242)
Q Consensus       103 ~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  182 (242)
                      .+..+++|++|++++|++  ..+| .+..+++|++|++++|++++. +. +..+++|++|++++|++++ +|... . ++
T Consensus        36 ~~~~l~~L~~L~l~~n~i--~~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~  107 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNI--QSLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGIP-S-AC  107 (263)
T ss_dssp             CHHHHTTCSEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTCC-C-SS
T ss_pred             chhhcCcCcEEECcCCCc--ccch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCccc-c-Cc
Confidence            567889999999997766  3566 688999999999999999954 44 8999999999999999985 44433 3 89


Q ss_pred             CCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163          183 LKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       183 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      |++|++++|++++ ++ .+..+++|++|++++|++++. + .+..+++|++|++++|+|+
T Consensus       108 L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~  163 (263)
T 1xeu_A          108 LSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT  163 (263)
T ss_dssp             CCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred             ccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence            9999999999996 44 689999999999999999864 4 6889999999999999885

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.70  E-value=1.5e-16  Score=139.79  Aligned_cols=128  Identities=24%  Similarity=0.416  Sum_probs=73.2

Q ss_pred             cCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCC
Q 026163          104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKL  183 (242)
Q Consensus       104 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  183 (242)
                      +..+++|++|++++|.+ . .++. +..+++|++|++++|++++..+  +..+++|++|++++|++++..+  +..+++|
T Consensus       239 l~~l~~L~~L~l~~n~l-~-~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L  311 (466)
T 1o6v_A          239 LASLTNLTDLDLANNQI-S-NLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL  311 (466)
T ss_dssp             GGGCTTCSEEECCSSCC-C-CCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred             hhcCCCCCEEECCCCcc-c-cchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC
Confidence            44455555555554433 1 1222 4555556666666665553322  5556666666666666653322  5566666


Q ss_pred             CEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163          184 KILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       184 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      ++|++++|++++..|  +..+++|+.|++++|.+++.  ..+..+++|+.|++++|+++
T Consensus       312 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~  366 (466)
T 1o6v_A          312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQIS  366 (466)
T ss_dssp             SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccC
Confidence            666666666665443  55666677777777766643  34667777777777777653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.70  E-value=2e-16  Score=142.14  Aligned_cols=116  Identities=22%  Similarity=0.362  Sum_probs=78.3

Q ss_pred             CCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEe
Q 026163          109 NLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNL  188 (242)
Q Consensus       109 ~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  188 (242)
                      +|++|++++|++ + .+|.   .+++|++|++++|++++ +|.   .+++|++|++++|++++ +|. +.  ++|++|++
T Consensus       121 ~L~~L~Ls~N~l-~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~L  187 (571)
T 3cvr_A          121 SLKHLDVDNNQL-T-MLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDV  187 (571)
T ss_dssp             TCCEEECCSSCC-S-CCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEEC
T ss_pred             CCCEEECCCCcC-C-CCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEEC
Confidence            555555554433 2 2444   45666666666666664 444   45677777777777774 555 54  77888888


Q ss_pred             ecCCCccccccccCCCCCC-------cEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163          189 SSNFLVGNIPLTLCHLSKL-------KILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       189 ~~N~l~~~~p~~l~~l~~L-------~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      ++|+|+ .+|. +..  +|       +.|++++|.|+ .+|..+..+++|+.|++++|+|+
T Consensus       188 s~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          188 STNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             CSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCC
T ss_pred             cCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCC
Confidence            888887 5665 544  66       88888888888 57877778899999999999875

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.70  E-value=1.5e-16  Score=121.44  Aligned_cols=107  Identities=25%  Similarity=0.280  Sum_probs=87.1

Q ss_pred             CCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEee
Q 026163          110 LKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLS  189 (242)
Q Consensus       110 L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  189 (242)
                      .++++++++.+  ..+|..+  .++|++|++++|++++..|..|.++++|++|++++|++++..+..|..+++|++|+|+
T Consensus        11 ~~~l~~s~n~l--~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSL--ASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCC--SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCc--CccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            46788886655  3567654  3788999999999987778888889999999999999986666677888999999999


Q ss_pred             cCCCccccccccCCCCCCcEEEcccCCCCCC
Q 026163          190 SNFLVGNIPLTLCHLSKLKILNLSSNSLVGN  220 (242)
Q Consensus       190 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~  220 (242)
                      +|++++..+..|..+++|++|++++|++...
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            9999876666688889999999999988754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.69  E-value=2.2e-18  Score=144.80  Aligned_cols=135  Identities=21%  Similarity=0.219  Sum_probs=68.9

Q ss_pred             cCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCc-cCCCC-CChhccCCcCCcEEEcccC-cCCCC-CCcCcCC
Q 026163          104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSS-RLTGI-IPSEMGRLRNLVRLDLSDN-YIGGY-IPPTLGR  179 (242)
Q Consensus       104 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~  179 (242)
                      +..+++|++|++++|. +++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..
T Consensus       114 ~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  192 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH  192 (336)
T ss_dssp             HTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred             HhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh
Confidence            3444444444444332 22233444444555555555554 34321 3333444555555555555 44422 2333445


Q ss_pred             CC-CCCEEEeecC--CCc-cccccccCCCCCCcEEEcccCC-CCCCCcccccCCcCCCEEeCcCC
Q 026163          180 LS-KLKILNLSSN--FLV-GNIPLTLCHLSKLKILNLSSNS-LVGNIPPTLGHLTQLTTLAMSNK  239 (242)
Q Consensus       180 l~-~L~~L~L~~N--~l~-~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~ls~N  239 (242)
                      ++ +|++|++++|  .++ +.+|..+..+++|++|++++|. +++..+..+..+++|++|++++|
T Consensus       193 l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          193 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            55 5666666655  333 2344445556666666666666 55555556666677777777666

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.69  E-value=3.5e-17  Score=121.91  Aligned_cols=109  Identities=27%  Similarity=0.264  Sum_probs=99.2

Q ss_pred             CCCCCEEeccCccCC-CCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEE
Q 026163          132 LSMLQTLELPSSRLT-GIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKIL  210 (242)
Q Consensus       132 l~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  210 (242)
                      .++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            478999999999998 78888889999999999999999865  789999999999999999998788888889999999


Q ss_pred             EcccCCCCCC-CcccccCCcCCCEEeCcCCCCC
Q 026163          211 NLSSNSLVGN-IPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       211 ~L~~N~l~~~-~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      ++++|.+++. .+..+..+++|++|++++|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence            9999999863 3478999999999999999874

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.69  E-value=6.2e-16  Score=135.74  Aligned_cols=143  Identities=23%  Similarity=0.230  Sum_probs=77.2

Q ss_pred             CCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCC-------
Q 026163           78 SAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIP-------  150 (242)
Q Consensus        78 ~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-------  150 (242)
                      ...+++.|+++++   .+.+ +   .+..+++|++|++++|++ + .+|  +..+++|++|++++|++++. +       
T Consensus        83 ~l~~L~~L~Ls~N---~l~~-~---~~~~l~~L~~L~L~~N~l-~-~l~--~~~l~~L~~L~l~~N~l~~l-~l~~l~~L  150 (457)
T 3bz5_A           83 QNTNLTYLACDSN---KLTN-L---DVTPLTKLTYLNCDTNKL-T-KLD--VSQNPLLTYLNCARNTLTEI-DVSHNTQL  150 (457)
T ss_dssp             TCTTCSEEECCSS---CCSC-C---CCTTCTTCCEEECCSSCC-S-CCC--CTTCTTCCEEECTTSCCSCC-CCTTCTTC
T ss_pred             cCCCCCEEECcCC---CCce-e---ecCCCCcCCEEECCCCcC-C-eec--CCCCCcCCEEECCCCcccee-ccccCCcC
Confidence            3455666666665   4443 1   255666666666665443 2 233  55555666666666655532 1       


Q ss_pred             -------------hhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCC
Q 026163          151 -------------SEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSL  217 (242)
Q Consensus       151 -------------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l  217 (242)
                                   ..+..+++|++|++++|++++ +|  +..+++|++|++++|++++.   .++.+++|++|++++|++
T Consensus       151 ~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l  224 (457)
T 3bz5_A          151 TELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKL  224 (457)
T ss_dssp             CEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCC
T ss_pred             CEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcc
Confidence                         013344455555555555553 22  44555555555555555532   255566666666666666


Q ss_pred             CCCCcccccCCcCCCEEeCcCCCC
Q 026163          218 VGNIPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       218 ~~~~p~~l~~l~~L~~L~ls~N~l  241 (242)
                      ++ +|  +..+++|++|++++|++
T Consensus       225 ~~-ip--~~~l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          225 TE-ID--VTPLTQLTYFDCSVNPL  245 (457)
T ss_dssp             SC-CC--CTTCTTCSEEECCSSCC
T ss_pred             cc-cC--ccccCCCCEEEeeCCcC
Confidence            64 34  55666666666666655

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.69  E-value=4.3e-18  Score=143.05  Aligned_cols=158  Identities=18%  Similarity=0.221  Sum_probs=128.3

Q ss_pred             CCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccc-cCchhhhcCCCCCEEeccCc-cCCCC-CChhcc
Q 026163           78 SAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSG-SIPSEITALSMLQTLELPSS-RLTGI-IPSEMG  154 (242)
Q Consensus        78 ~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~-~~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~  154 (242)
                      ...+++.|+++++   .+.+.. +..+..+++|++|++++|..+++ .++..+..+++|++|++++| .+++. ++..+.
T Consensus       116 ~~~~L~~L~L~~~---~l~~~~-~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  191 (336)
T 2ast_B          116 QCSKLQNLSLEGL---RLSDPI-VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA  191 (336)
T ss_dssp             TBCCCSEEECTTC---BCCHHH-HHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred             hCCCCCEEeCcCc---ccCHHH-HHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH
Confidence            3457888888887   666555 56778899999999998744444 36777889999999999999 88854 567788


Q ss_pred             CCc-CCcEEEcccC--cCC-CCCCcCcCCCCCCCEEEeecCC-CccccccccCCCCCCcEEEcccCC-CCCCCcccccCC
Q 026163          155 RLR-NLVRLDLSDN--YIG-GYIPPTLGRLSKLKILNLSSNF-LVGNIPLTLCHLSKLKILNLSSNS-LVGNIPPTLGHL  228 (242)
Q Consensus       155 ~l~-~L~~L~Ls~N--~l~-~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l  228 (242)
                      .++ +|++|++++|  .++ +.+|..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+.++
T Consensus       192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~  271 (336)
T 2ast_B          192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI  271 (336)
T ss_dssp             HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred             hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC
Confidence            899 9999999999  455 3556677889999999999999 777778889999999999999995 332222367889


Q ss_pred             cCCCEEeCcCC
Q 026163          229 TQLTTLAMSNK  239 (242)
Q Consensus       229 ~~L~~L~ls~N  239 (242)
                      ++|++|++++|
T Consensus       272 ~~L~~L~l~~~  282 (336)
T 2ast_B          272 PTLKTLQVFGI  282 (336)
T ss_dssp             TTCCEEECTTS
T ss_pred             CCCCEEeccCc
Confidence            99999999988

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.69  E-value=4.5e-16  Score=136.63  Aligned_cols=141  Identities=18%  Similarity=0.216  Sum_probs=77.0

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL  159 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  159 (242)
                      .+++.|+++++   .+.+ +   .+..+++|++|++++|.+ ++ ++  +.++++|++|++++|++++ +|  ++.+++|
T Consensus        64 ~~L~~L~Ls~n---~l~~-~---~~~~l~~L~~L~Ls~N~l-~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L  129 (457)
T 3bz5_A           64 TGLTKLICTSN---NITT-L---DLSQNTNLTYLACDSNKL-TN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLL  129 (457)
T ss_dssp             TTCSEEECCSS---CCSC-C---CCTTCTTCSEEECCSSCC-SC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTC
T ss_pred             CCCCEEEccCC---cCCe-E---ccccCCCCCEEECcCCCC-ce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcC
Confidence            34555555554   3333 1   144555555555554433 21 22  4555555555555555553 22  4555555


Q ss_pred             cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCC
Q 026163          160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNK  239 (242)
Q Consensus       160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N  239 (242)
                      ++|++++|++++.   .++.+++|++|++++|+..+.+  .+..+++|++|++++|.+++ +|  +..+++|++|++++|
T Consensus       130 ~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N  201 (457)
T 3bz5_A          130 TYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTN  201 (457)
T ss_dssp             CEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSS
T ss_pred             CEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCC
Confidence            5555555555532   2455555666666555433333  35566677777777777764 34  666777777777777


Q ss_pred             CCC
Q 026163          240 VAI  242 (242)
Q Consensus       240 ~lt  242 (242)
                      +++
T Consensus       202 ~l~  204 (457)
T 3bz5_A          202 NIT  204 (457)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.68  E-value=3.7e-18  Score=146.46  Aligned_cols=158  Identities=20%  Similarity=0.208  Sum_probs=95.6

Q ss_pred             CCeEEEEecccCCCCcee----eeCCCCcCCCCCCCEEEecCCCccccc----CchhhhcC---------CCCCEEeccC
Q 026163           80 GSVIRVSLLWYENDNMKG----ELGRFNFSCFPNLKSFKIHSNYLLSGS----IPSEITAL---------SMLQTLELPS  142 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~----~i~~~~~~~l~~L~~L~l~~~~~~~~~----~p~~~~~l---------~~L~~L~l~~  142 (242)
                      .+++.|+++++   .+.+    .+ +..+..+++|++|++++|.+ +..    ++..+..+         ++|++|++++
T Consensus        94 ~~L~~L~Ls~n---~l~~~~~~~l-~~~l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~  168 (386)
T 2ca6_A           94 PKLHTVRLSDN---AFGPTAQEPL-IDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGR  168 (386)
T ss_dssp             TTCCEEECCSC---CCCTTTHHHH-HHHHHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred             CcccEEECCCC---cCCHHHHHHH-HHHHHhCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence            45666666665   4443    23 33455566666666665443 211    12223333         6677777777


Q ss_pred             ccCC-CCCC---hhccCCcCCcEEEcccCcCCC-----CCCcCcCCCCCCCEEEeecCCCc----cccccccCCCCCCcE
Q 026163          143 SRLT-GIIP---SEMGRLRNLVRLDLSDNYIGG-----YIPPTLGRLSKLKILNLSSNFLV----GNIPLTLCHLSKLKI  209 (242)
Q Consensus       143 n~l~-~~~p---~~~~~l~~L~~L~Ls~N~l~~-----~~p~~~~~l~~L~~L~L~~N~l~----~~~p~~l~~l~~L~~  209 (242)
                      |+++ +.++   ..+..+++|++|++++|+++.     ..|..+..+++|++|++++|.++    ..+|..+..+++|++
T Consensus       169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~  248 (386)
T 2ca6_A          169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE  248 (386)
T ss_dssp             SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred             CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence            7665 2333   344566677777777777652     23336667777777777777775    456666777777777


Q ss_pred             EEcccCCCCCC----Cccccc--CCcCCCEEeCcCCCCC
Q 026163          210 LNLSSNSLVGN----IPPTLG--HLTQLTTLAMSNKVAI  242 (242)
Q Consensus       210 L~L~~N~l~~~----~p~~l~--~l~~L~~L~ls~N~lt  242 (242)
                      |++++|.+++.    ++..+.  .+++|++|++++|.|+
T Consensus       249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~  287 (386)
T 2ca6_A          249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  287 (386)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence            77777777654    445553  3777788888777764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.68  E-value=3.4e-16  Score=119.89  Aligned_cols=105  Identities=23%  Similarity=0.253  Sum_probs=87.3

Q ss_pred             CEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeec
Q 026163          111 KSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSS  190 (242)
Q Consensus       111 ~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  190 (242)
                      +.++++++.+  +.+|..+.  ++|++|++++|++++..|..|.++++|++|++++|++++..+..+.++++|++|+|++
T Consensus        15 ~~l~~~~n~l--~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRL--ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCC--SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCC--CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            6788886665  56776553  7899999999999987788889999999999999999866556678899999999999


Q ss_pred             CCCccccccccCCCCCCcEEEcccCCCCC
Q 026163          191 NFLVGNIPLTLCHLSKLKILNLSSNSLVG  219 (242)
Q Consensus       191 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  219 (242)
                      |++++..+..|..+++|++|++++|++..
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCccc
Confidence            99996555568889999999999999874

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.67  E-value=1.2e-19  Score=141.97  Aligned_cols=131  Identities=22%  Similarity=0.267  Sum_probs=110.7

Q ss_pred             CcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCC
Q 026163          103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSK  182 (242)
Q Consensus       103 ~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  182 (242)
                      .+..+++|++|++++|.+ + .+| .+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +| .+..+++
T Consensus        43 ~~~~l~~L~~L~ls~n~l-~-~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~  116 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNI-E-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN  116 (198)
T ss_dssp             HHHHTTTCSEEECSEEEE-S-CCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred             HHhcCCCCCEEECCCCCC-c-ccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence            788899999999997665 3 377 7899999999999999998 678888888999999999999985 45 6888999


Q ss_pred             CCEEEeecCCCccccc-cccCCCCCCcEEEcccCCCCCCCcc----------cccCCcCCCEEeCcCCCC
Q 026163          183 LKILNLSSNFLVGNIP-LTLCHLSKLKILNLSSNSLVGNIPP----------TLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       183 L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~----------~l~~l~~L~~L~ls~N~l  241 (242)
                      |++|++++|++++..+ ..+..+++|++|++++|.+.+.+|.          .+..+++|+.||  +|.+
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i  184 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV  184 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence            9999999999985332 4788999999999999999876554          378899999997  5554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.66  E-value=3.2e-18  Score=146.87  Aligned_cols=161  Identities=17%  Similarity=0.218  Sum_probs=129.5

Q ss_pred             CCCeEEEEecccCCCCceeeeC---CCCcCCC---------CCCCEEEecCCCcccccCc---hhhhcCCCCCEEeccCc
Q 026163           79 AGSVIRVSLLWYENDNMKGELG---RFNFSCF---------PNLKSFKIHSNYLLSGSIP---SEITALSMLQTLELPSS  143 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~---~~~~~~l---------~~L~~L~l~~~~~~~~~~p---~~~~~l~~L~~L~l~~n  143 (242)
                      ..+++.|+++++   .+.+..+   ...+..+         ++|++|++++|++..+.++   ..+..+++|++|++++|
T Consensus       121 ~~~L~~L~L~~n---~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n  197 (386)
T 2ca6_A          121 HTPLEHLYLHNN---GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN  197 (386)
T ss_dssp             CTTCCEEECCSS---CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred             CCCCCEEECcCC---CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC
Confidence            468999999998   6643220   1223334         8999999998776545566   46778999999999999


Q ss_pred             cCCC-----CCChhccCCcCCcEEEcccCcCC----CCCCcCcCCCCCCCEEEeecCCCccc----ccccc--CCCCCCc
Q 026163          144 RLTG-----IIPSEMGRLRNLVRLDLSDNYIG----GYIPPTLGRLSKLKILNLSSNFLVGN----IPLTL--CHLSKLK  208 (242)
Q Consensus       144 ~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l--~~l~~L~  208 (242)
                      +++.     ..|..+..+++|++|++++|.++    ..+|..+..+++|++|++++|.+++.    +|..+  +++++|+
T Consensus       198 ~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~  277 (386)
T 2ca6_A          198 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ  277 (386)
T ss_dssp             CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCC
T ss_pred             CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeE
Confidence            9983     23447788999999999999995    46788889999999999999999875    56666  4489999


Q ss_pred             EEEcccCCCCC----CCcccc-cCCcCCCEEeCcCCCCC
Q 026163          209 ILNLSSNSLVG----NIPPTL-GHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       209 ~L~L~~N~l~~----~~p~~l-~~l~~L~~L~ls~N~lt  242 (242)
                      +|++++|.+++    .+|..+ .++++|++|++++|+++
T Consensus       278 ~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          278 TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             EEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             EEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            99999999997    477777 66899999999999985

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=3.4e-16  Score=140.79  Aligned_cols=103  Identities=27%  Similarity=0.348  Sum_probs=56.7

Q ss_pred             CCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcc
Q 026163          134 MLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLS  213 (242)
Q Consensus       134 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~  213 (242)
                      .|++|++++|++++ +|. ++.+++|++|++++|.++ .+|..++.+++|++|+|++|++++ +| .++.+++|++|+++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            35555555555553 343 555555555555555555 455555555555555555555553 34 45555555555555


Q ss_pred             cCCCCCCC-cccccCCcCCCEEeCcCCCC
Q 026163          214 SNSLVGNI-PPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       214 ~N~l~~~~-p~~l~~l~~L~~L~ls~N~l  241 (242)
                      +|.+++.. |..++.+++|+.|++++|+|
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l  545 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSL  545 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence            55555443 55555555555555555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.64  E-value=1.2e-15  Score=116.33  Aligned_cols=105  Identities=18%  Similarity=0.185  Sum_probs=83.7

Q ss_pred             EEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEE
Q 026163           84 RVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLD  163 (242)
Q Consensus        84 ~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  163 (242)
                      .++++++   .+.. + +..+  .++|++|++++|+ +++..|..|..+++|++|++++|++++..+..|..+++|++|+
T Consensus        13 ~l~~s~n---~l~~-i-p~~~--~~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~   84 (170)
T 3g39_A           13 TVDCSGK---SLAS-V-PTGI--PTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS   84 (170)
T ss_dssp             EEECTTS---CCSS-C-CSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             EEEeCCC---CcCc-c-CccC--CCCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence            4555554   4433 4 3333  3789999999655 4555577789999999999999999977777789999999999


Q ss_pred             cccCcCCCCCCcCcCCCCCCCEEEeecCCCccc
Q 026163          164 LSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGN  196 (242)
Q Consensus       164 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  196 (242)
                      +++|++++..+..+..+++|++|++++|.++..
T Consensus        85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            999999977667799999999999999998854

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.64  E-value=2.3e-17  Score=140.44  Aligned_cols=157  Identities=20%  Similarity=0.218  Sum_probs=88.7

Q ss_pred             CeEEEEecccCCCCceeeeCCCCcCCC-----CCCCEEEecCCCcccccCchh----hhcC-CCCCEEeccCccCCCCCC
Q 026163           81 SVIRVSLLWYENDNMKGELGRFNFSCF-----PNLKSFKIHSNYLLSGSIPSE----ITAL-SMLQTLELPSSRLTGIIP  150 (242)
Q Consensus        81 ~v~~L~l~~~~~~~~~~~i~~~~~~~l-----~~L~~L~l~~~~~~~~~~p~~----~~~l-~~L~~L~l~~n~l~~~~p  150 (242)
                      +++.|+++++   .+.+.. +..+..+     ++|++|++++|.+ ++..+..    +..+ ++|++|++++|++++..+
T Consensus        52 ~L~~L~Ls~N---~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  126 (362)
T 3goz_A           52 SVTSLNLSGN---SLGFKN-SDELVQILAAIPANVTSLNLSGNFL-SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS  126 (362)
T ss_dssp             TCCEEECCSS---CGGGSC-HHHHHHHHHTSCTTCCEEECCSSCG-GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             ceeEEECcCC---CCCHHH-HHHHHHHHhccCCCccEEECcCCcC-ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence            5667777666   544432 2233332     6677777775543 3333332    2333 667777777777765544


Q ss_pred             hhcc----C-CcCCcEEEcccCcCCCCCCc----CcCCCC-CCCEEEeecCCCccccccc----cCCC-CCCcEEEcccC
Q 026163          151 SEMG----R-LRNLVRLDLSDNYIGGYIPP----TLGRLS-KLKILNLSSNFLVGNIPLT----LCHL-SKLKILNLSSN  215 (242)
Q Consensus       151 ~~~~----~-l~~L~~L~Ls~N~l~~~~p~----~~~~l~-~L~~L~L~~N~l~~~~p~~----l~~l-~~L~~L~L~~N  215 (242)
                      ..+.    . .++|++|++++|++++..+.    .+..++ +|++|++++|++++..+..    +... ++|++|++++|
T Consensus       127 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N  206 (362)
T 3goz_A          127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN  206 (362)
T ss_dssp             HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred             HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence            4332    2 24677777777776643322    233443 6777777777776554433    3334 47777777777


Q ss_pred             CCCCC----CcccccC-CcCCCEEeCcCCCCC
Q 026163          216 SLVGN----IPPTLGH-LTQLTTLAMSNKVAI  242 (242)
Q Consensus       216 ~l~~~----~p~~l~~-l~~L~~L~ls~N~lt  242 (242)
                      .+++.    ++..+.. .++|++|++++|+++
T Consensus       207 ~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  238 (362)
T 3goz_A          207 LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH  238 (362)
T ss_dssp             CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred             CCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence            77652    3444444 347777777777764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.63  E-value=2.1e-15  Score=115.54  Aligned_cols=106  Identities=21%  Similarity=0.215  Sum_probs=86.1

Q ss_pred             EEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEE
Q 026163           83 IRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL  162 (242)
Q Consensus        83 ~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  162 (242)
                      +.++++++   ++ +.+ +..+  .++|++|++++|+ +++..|..|.++++|++|++++|++++..+..|.++++|++|
T Consensus        15 ~~l~~~~n---~l-~~i-P~~~--~~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L   86 (174)
T 2r9u_A           15 TLVNCQNI---RL-ASV-PAGI--PTDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL   86 (174)
T ss_dssp             SEEECCSS---CC-SSC-CSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cEEEeCCC---CC-Ccc-CCCc--CCCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence            46777776   54 345 3433  3889999999655 455667789999999999999999997666667899999999


Q ss_pred             EcccCcCCCCCCcCcCCCCCCCEEEeecCCCccc
Q 026163          163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGN  196 (242)
Q Consensus       163 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  196 (242)
                      ++++|++++..+..+..+++|++|++++|.+...
T Consensus        87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             ECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            9999999966666699999999999999999843

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.62  E-value=9e-16  Score=139.23  Aligned_cols=90  Identities=19%  Similarity=0.206  Sum_probs=46.8

Q ss_pred             CCCCCcccceEe------C-CCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCE
Q 026163           65 TSDHCKWTGIRC------N-SAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQT  137 (242)
Q Consensus        65 ~~~~C~w~gv~c------~-~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~  137 (242)
                      ..++|.|.|..+      . ....++.|+++++   ++. .+ +..+.  ++|++|++++|++  ..+|.   .+++|++
T Consensus        18 ~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n---~L~-~l-p~~l~--~~L~~L~L~~N~l--~~lp~---~l~~L~~   85 (622)
T 3g06_A           18 AAPAEESRGRAAVVQKMRACLNNGNAVLNVGES---GLT-TL-PDCLP--AHITTLVIPDNNL--TSLPA---LPPELRT   85 (622)
T ss_dssp             TCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSS---CCS-CC-CSCCC--TTCSEEEECSCCC--SCCCC---CCTTCCE
T ss_pred             cCCcchhccccccCcccccccCCCCcEEEecCC---CcC-cc-ChhhC--CCCcEEEecCCCC--CCCCC---cCCCCCE
Confidence            456677755322      0 1224666776665   444 33 22222  5666666665544  23444   3556666


Q ss_pred             EeccCccCCCCCChhccCCcCCcEEEcccCcCC
Q 026163          138 LELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIG  170 (242)
Q Consensus       138 L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  170 (242)
                      |++++|+++ .+|.   .+++|++|++++|+++
T Consensus        86 L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~  114 (622)
T 3g06_A           86 LEVSGNQLT-SLPV---LPPGLLELSIFSNPLT  114 (622)
T ss_dssp             EEECSCCCS-CCCC---CCTTCCEEEECSCCCC
T ss_pred             EEcCCCcCC-cCCC---CCCCCCEEECcCCcCC
Confidence            666666665 3343   4455555555555555

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.60  E-value=1.4e-14  Score=127.06  Aligned_cols=102  Identities=22%  Similarity=0.295  Sum_probs=44.8

Q ss_pred             cCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCC
Q 026163          104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKL  183 (242)
Q Consensus       104 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  183 (242)
                      +..+++|++|++++|.+ + .+|..   .++|++|++++|++++ +| .++++++|++|++++|++++ +|...   ++|
T Consensus       149 ~~~l~~L~~L~l~~N~l-~-~lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L  217 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNSL-K-KLPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSL  217 (454)
T ss_dssp             CTTCTTCCEEECCSSCC-S-CCCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTC
T ss_pred             cCCCCCCCEEECCCCcC-c-ccCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---Ccc
Confidence            44555555555554332 1 13321   1244444555554443 33 34445555555555554442 22211   244


Q ss_pred             CEEEeecCCCccccccccCCCCCCcEEEcccCCCC
Q 026163          184 KILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV  218 (242)
Q Consensus       184 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  218 (242)
                      ++|++++|.++ .+| .++.+++|++|++++|+++
T Consensus       218 ~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          218 ESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK  250 (454)
T ss_dssp             CEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS
T ss_pred             cEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC
Confidence            44444444444 333 2444555555555555554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.60  E-value=1.6e-15  Score=116.10  Aligned_cols=110  Identities=25%  Similarity=0.227  Sum_probs=93.7

Q ss_pred             hhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCc
Q 026163          129 ITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLK  208 (242)
Q Consensus       129 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  208 (242)
                      +.++++|++|++++|+++ .+|......++|++|++++|.+++.  ..+..+++|++|++++|++++..+..+..+++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            567889999999999999 4565333344999999999999954  6899999999999999999965445568999999


Q ss_pred             EEEcccCCCCCCCcc--cccCCcCCCEEeCcCCCCC
Q 026163          209 ILNLSSNSLVGNIPP--TLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       209 ~L~L~~N~l~~~~p~--~l~~l~~L~~L~ls~N~lt  242 (242)
                      +|++++|.++ .+|.  .+..+++|++|++++|+++
T Consensus        92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence            9999999997 5665  7889999999999999874

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.59  E-value=1.5e-16  Score=135.47  Aligned_cols=159  Identities=20%  Similarity=0.209  Sum_probs=122.2

Q ss_pred             CCCeEEEEecccCCCCceeeeCC----CCcCCCC-CCCEEEecCCCcccccCchhhhcC-----CCCCEEeccCccCCCC
Q 026163           79 AGSVIRVSLLWYENDNMKGELGR----FNFSCFP-NLKSFKIHSNYLLSGSIPSEITAL-----SMLQTLELPSSRLTGI  148 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~----~~~~~l~-~L~~L~l~~~~~~~~~~p~~~~~l-----~~L~~L~l~~n~l~~~  148 (242)
                      ..+++.|+++++   .+.+.. .    ..+..++ +|++|++++|.+ ++..+..+..+     ++|++|++++|++++.
T Consensus        21 ~~~L~~L~Ls~n---~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~   95 (362)
T 3goz_A           21 PHGVTSLDLSLN---NLYSIS-TVELIQAFANTPASVTSLNLSGNSL-GFKNSDELVQILAAIPANVTSLNLSGNFLSYK   95 (362)
T ss_dssp             CTTCCEEECTTS---CGGGSC-HHHHHHHHHTCCTTCCEEECCSSCG-GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred             CCCceEEEccCC---CCChHH-HHHHHHHHHhCCCceeEEECcCCCC-CHHHHHHHHHHHhccCCCccEEECcCCcCChH
Confidence            455999999998   665432 3    5677888 899999997654 44556666664     9999999999999977


Q ss_pred             CChhcc----CC-cCCcEEEcccCcCCCCCCcCc----CC-CCCCCEEEeecCCCcccc----ccccCCCC-CCcEEEcc
Q 026163          149 IPSEMG----RL-RNLVRLDLSDNYIGGYIPPTL----GR-LSKLKILNLSSNFLVGNI----PLTLCHLS-KLKILNLS  213 (242)
Q Consensus       149 ~p~~~~----~l-~~L~~L~Ls~N~l~~~~p~~~----~~-l~~L~~L~L~~N~l~~~~----p~~l~~l~-~L~~L~L~  213 (242)
                      .+..+.    .+ ++|++|++++|++++..+..+    .. .++|++|++++|.+++..    +..+..++ +|++|+++
T Consensus        96 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls  175 (362)
T 3goz_A           96 SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR  175 (362)
T ss_dssp             CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred             HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeec
Confidence            766543    44 899999999999986655443    34 369999999999998633    34445565 99999999


Q ss_pred             cCCCCCCCcccc----cCC-cCCCEEeCcCCCCC
Q 026163          214 SNSLVGNIPPTL----GHL-TQLTTLAMSNKVAI  242 (242)
Q Consensus       214 ~N~l~~~~p~~l----~~l-~~L~~L~ls~N~lt  242 (242)
                      +|.+++..+..+    ..+ ++|++|++++|+|+
T Consensus       176 ~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          176 GNNLASKNCAELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             TSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             CCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence            999987766544    455 59999999999874

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.59  E-value=2.2e-14  Score=130.10  Aligned_cols=77  Identities=31%  Similarity=0.358  Sum_probs=60.0

Q ss_pred             cCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeC
Q 026163          157 RNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAM  236 (242)
Q Consensus       157 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l  236 (242)
                      ++|++|++++|++++ +|   ..+++|++|++++|+++ .+|.   .+++|+.|++++|.++ .+|..+.++++|+.|++
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            556667777776663 44   34567888888888887 4554   5678999999999998 77888999999999999


Q ss_pred             cCCCCC
Q 026163          237 SNKVAI  242 (242)
Q Consensus       237 s~N~lt  242 (242)
                      ++|+++
T Consensus       292 ~~N~l~  297 (622)
T 3g06_A          292 EGNPLS  297 (622)
T ss_dssp             CSCCCC
T ss_pred             cCCCCC
Confidence            999875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.59  E-value=3.3e-15  Score=134.35  Aligned_cols=122  Identities=24%  Similarity=0.342  Sum_probs=107.2

Q ss_pred             CCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEe
Q 026163          109 NLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNL  188 (242)
Q Consensus       109 ~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  188 (242)
                      .|++|++++|++ + .+|. +..+++|++|++++|+++ .+|..++.+++|++|++++|++++ +| .++.+++|++|++
T Consensus       442 ~L~~L~Ls~n~l-~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDL-T-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCC-S-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred             CceEEEecCCCC-C-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence            578899997765 3 4786 999999999999999999 889999999999999999999995 67 8999999999999


Q ss_pred             ecCCCcccc-ccccCCCCCCcEEEcccCCCCCCCcc---cccCCcCCCEEeC
Q 026163          189 SSNFLVGNI-PLTLCHLSKLKILNLSSNSLVGNIPP---TLGHLTQLTTLAM  236 (242)
Q Consensus       189 ~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p~---~l~~l~~L~~L~l  236 (242)
                      ++|++++.. |..++.+++|+.|++++|++++.+|.   .+..+++|+.|++
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999999876 99999999999999999999976542   2345899999975

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.59  E-value=5.3e-18  Score=132.49  Aligned_cols=113  Identities=21%  Similarity=0.286  Sum_probs=99.6

Q ss_pred             cCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCC
Q 026163          124 SIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCH  203 (242)
Q Consensus       124 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~  203 (242)
                      .+|..+..+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +| .+..
T Consensus        39 ~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~  113 (198)
T 1ds9_A           39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEK  113 (198)
T ss_dssp             CCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHH
T ss_pred             hhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-cccc
Confidence            345589999999999999999995 67 8889999999999999999 678777788999999999999996 55 6888


Q ss_pred             CCCCcEEEcccCCCCCCCc-ccccCCcCCCEEeCcCCCC
Q 026163          204 LSKLKILNLSSNSLVGNIP-PTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       204 l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~ls~N~l  241 (242)
                      +++|++|++++|.+++..+ ..+..+++|++|++++|++
T Consensus       114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence            9999999999999985332 4788999999999999976

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.58  E-value=2.5e-14  Score=125.40  Aligned_cols=120  Identities=24%  Similarity=0.348  Sum_probs=88.4

Q ss_pred             CCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEE
Q 026163          108 PNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILN  187 (242)
Q Consensus       108 ~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  187 (242)
                      ++|++|++++|++ + .+| .+.++++|++|++++|++++ +|..+   .+|++|++++|++++ +| .++++++|++|+
T Consensus       131 ~~L~~L~L~~n~l-~-~lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~  201 (454)
T 1jl5_A          131 PLLEYLGVSNNQL-E-KLP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY  201 (454)
T ss_dssp             TTCCEEECCSSCC-S-SCC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred             CCCCEEECcCCCC-C-CCc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence            5777777775554 2 366 47777888888888887774 55432   478888888888774 55 578888888888


Q ss_pred             eecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163          188 LSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       188 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      +++|++++ +|...   ++|++|++++|.++ .+|. ++.+++|++|++++|+++
T Consensus       202 l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          202 ADNNSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLK  250 (454)
T ss_dssp             CCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS
T ss_pred             CCCCcCCc-CCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCC
Confidence            88888875 44322   57888888888887 5664 888999999999999874

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.57  E-value=7.1e-17  Score=141.13  Aligned_cols=137  Identities=20%  Similarity=0.118  Sum_probs=96.9

Q ss_pred             CCCCCCEEEecCCCccccc---CchhhhcCCCCCEEeccCccCCCCCChhcc-----CCcCCcEEEcccCcCCCC----C
Q 026163          106 CFPNLKSFKIHSNYLLSGS---IPSEITALSMLQTLELPSSRLTGIIPSEMG-----RLRNLVRLDLSDNYIGGY----I  173 (242)
Q Consensus       106 ~l~~L~~L~l~~~~~~~~~---~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~----~  173 (242)
                      .+++|++|++++|++....   ++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++.    +
T Consensus       254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  333 (461)
T 1z7x_W          254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF  333 (461)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH
Confidence            4667777777765442211   455566677788888888777644333332     225788888888887654    3


Q ss_pred             CcCcCCCCCCCEEEeecCCCccccccccCC-----CCCCcEEEcccCCCCC----CCcccccCCcCCCEEeCcCCCCC
Q 026163          174 PPTLGRLSKLKILNLSSNFLVGNIPLTLCH-----LSKLKILNLSSNSLVG----NIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       174 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-----l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      +..+..+++|++|++++|.+++..+..+..     .++|++|++++|.+++    .+|..+..+++|++|++++|+|+
T Consensus       334 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          334 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence            455667789999999999888654443332     6789999999999986    67788888899999999999875

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.54  E-value=2.4e-14  Score=120.88  Aligned_cols=106  Identities=24%  Similarity=0.190  Sum_probs=85.9

Q ss_pred             CEEEecCCCcccccCchhhhcCCCCCEEeccC-ccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEee
Q 026163          111 KSFKIHSNYLLSGSIPSEITALSMLQTLELPS-SRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLS  189 (242)
Q Consensus       111 ~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  189 (242)
                      ..+++++++.++ .+|. +..+++|++|+|++ |++++..+..|.++++|++|+|++|+|++..|..|.++++|++|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            356777552343 5788 88888999999986 99987777888999999999999999998888888999999999999


Q ss_pred             cCCCccccccccCCCCCCcEEEcccCCCCC
Q 026163          190 SNFLVGNIPLTLCHLSKLKILNLSSNSLVG  219 (242)
Q Consensus       190 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  219 (242)
                      +|+|++..+..+..++ |+.|++.+|.+..
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            9999865555565555 9999999998874

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.54  E-value=1.4e-16  Score=139.23  Aligned_cols=108  Identities=27%  Similarity=0.276  Sum_probs=49.0

Q ss_pred             CCCEEeccCccCCC----CCChhccCCcCCcEEEcccCcCCCCCCcCc-----CCCCCCCEEEeecCCCccc----cccc
Q 026163          134 MLQTLELPSSRLTG----IIPSEMGRLRNLVRLDLSDNYIGGYIPPTL-----GRLSKLKILNLSSNFLVGN----IPLT  200 (242)
Q Consensus       134 ~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~----~p~~  200 (242)
                      +|++|++++|++++    .++..+..+++|++|++++|.+++..+..+     ...++|++|++++|++++.    ++..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            35555555555542    234444555555555555555432212111     1233455555555555432    2333


Q ss_pred             cCCCCCCcEEEcccCCCCCCCccccc-----CCcCCCEEeCcCCCC
Q 026163          201 LCHLSKLKILNLSSNSLVGNIPPTLG-----HLTQLTTLAMSNKVA  241 (242)
Q Consensus       201 l~~l~~L~~L~L~~N~l~~~~p~~l~-----~l~~L~~L~ls~N~l  241 (242)
                      +..+++|++|++++|.+++..+..+.     ..++|++|++++|.+
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  211 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV  211 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCC
Confidence            44445555555555555433222222     234555555555554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.52  E-value=3.4e-14  Score=120.31  Aligned_cols=150  Identities=22%  Similarity=0.143  Sum_probs=102.4

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChh------
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSE------  152 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~------  152 (242)
                      ..+++.|+++++   .+.+.++...|.++++++++...+++.+.+..|..|..+++|++|++++|+++...+..      
T Consensus        53 l~~L~~L~Ls~N---~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  129 (350)
T 4ay9_X           53 FGDLEKIEISQN---DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ  129 (350)
T ss_dssp             CTTCCEEEEECC---TTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSS
T ss_pred             CCCCCEEECcCC---CCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccch
Confidence            467899999988   77777766778888887765444344444444666788888888888888876432211      


Q ss_pred             -------------------ccCC-cCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeec-CCCccccccccCCCCCCcEEE
Q 026163          153 -------------------MGRL-RNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSS-NFLVGNIPLTLCHLSKLKILN  211 (242)
Q Consensus       153 -------------------~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~  211 (242)
                                         |..+ ..+++|++++|+++ .+|.......+|+++++.+ |.++...+..|..+++|++|+
T Consensus       130 l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~Ld  208 (350)
T 4ay9_X          130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD  208 (350)
T ss_dssp             CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEE
T ss_pred             hhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhh
Confidence                               2222 35778888899888 4555555667889999875 566643345678899999999


Q ss_pred             cccCCCCCCCcccccCCcCCC
Q 026163          212 LSSNSLVGNIPPTLGHLTQLT  232 (242)
Q Consensus       212 L~~N~l~~~~p~~l~~l~~L~  232 (242)
                      +++|+++...+..+.++++|+
T Consensus       209 Ls~N~l~~lp~~~~~~L~~L~  229 (350)
T 4ay9_X          209 ISRTRIHSLPSYGLENLKKLR  229 (350)
T ss_dssp             CTTSCCCCCCSSSCTTCCEEE
T ss_pred             cCCCCcCccChhhhccchHhh
Confidence            999999844334444443333

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.47  E-value=1.3e-13  Score=116.29  Aligned_cols=111  Identities=27%  Similarity=0.284  Sum_probs=90.1

Q ss_pred             CCcccceEeCCCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCC
Q 026163           68 HCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTG  147 (242)
Q Consensus        68 ~C~w~gv~c~~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~  147 (242)
                      .|.|..+.|....             ++ ..+ |. +..+++|++|+|+++|.+.+..+..|..+++|++|+|++|+|++
T Consensus         7 ~C~~~~v~~~~~n-------------~l-~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~   70 (347)
T 2ifg_A            7 PHGSSGLRCTRDG-------------AL-DSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF   70 (347)
T ss_dssp             CSSSSCEECCSSC-------------CC-TTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE
T ss_pred             cccCCEEEcCCCC-------------CC-Ccc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce
Confidence            3788888775321             12 235 55 88999999999996355565666779999999999999999999


Q ss_pred             CCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCcc
Q 026163          148 IIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVG  195 (242)
Q Consensus       148 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  195 (242)
                      ..|..|.++++|++|+|++|+|++..+..+..++ |++|+|.+|.+..
T Consensus        71 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           71 VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             ECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             eCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            8899999999999999999999966665666665 9999999999984

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.46  E-value=8e-16  Score=131.57  Aligned_cols=160  Identities=15%  Similarity=0.074  Sum_probs=109.8

Q ss_pred             CCeEEEEecccCCCCceeeeC---CCCcC-CCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhc--
Q 026163           80 GSVIRVSLLWYENDNMKGELG---RFNFS-CFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEM--  153 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~---~~~~~-~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~--  153 (242)
                      ..++.|+++++   .+...-.   ...+. ..++|++|++++|.+...........+++|++|++++|.+++.....+  
T Consensus        72 ~~L~~L~Ls~n---~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~  148 (372)
T 3un9_A           72 SSLRQLNLAGV---RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD  148 (372)
T ss_dssp             TTCCEEECTTS---CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred             hhCCEEEecCC---CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence            46888999887   5543210   11122 236899999997765322222223456788999999998875433333  


Q ss_pred             ---cCCcCCcEEEcccCcCCCC----CCcCcCCCCCCCEEEeecCCCccc----cccccCCCCCCcEEEcccCCCCCC--
Q 026163          154 ---GRLRNLVRLDLSDNYIGGY----IPPTLGRLSKLKILNLSSNFLVGN----IPLTLCHLSKLKILNLSSNSLVGN--  220 (242)
Q Consensus       154 ---~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~--  220 (242)
                         ...++|++|++++|.++..    ++..+...++|++|+|++|.+.+.    ++..+...++|++|++++|.+++.  
T Consensus       149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~  228 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA  228 (372)
T ss_dssp             HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred             HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence               2467899999999988642    334456788899999999998753    345667778899999999998753  


Q ss_pred             --CcccccCCcCCCEEeCcCCCCC
Q 026163          221 --IPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       221 --~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                        ++..+...++|++|++++|.|+
T Consensus       229 ~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          229 LALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHHHhCCCCCEEeccCCCCC
Confidence              3344556788999999999875

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.37  E-value=2.9e-12  Score=107.44  Aligned_cols=84  Identities=19%  Similarity=0.126  Sum_probs=50.9

Q ss_pred             CcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCc-EEEcccCCCCCCCcccccCCcCCCEE
Q 026163          156 LRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLK-ILNLSSNSLVGNIPPTLGHLTQLTTL  234 (242)
Q Consensus       156 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~-~L~L~~N~l~~~~p~~l~~l~~L~~L  234 (242)
                      +++|+++++++|+++...+..|.++++|+.+++.+| ++...+..|.++++|+ .+++.+ .++...+..|.++++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            456666666666666444445666666666666665 5544455566666666 666665 4543444566666666666


Q ss_pred             eCcCCCC
Q 026163          235 AMSNKVA  241 (242)
Q Consensus       235 ~ls~N~l  241 (242)
                      ++++|++
T Consensus       303 ~l~~n~i  309 (329)
T 3sb4_A          303 LATGDKI  309 (329)
T ss_dssp             EECSSCC
T ss_pred             EeCCCcc
Confidence            6666654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.31  E-value=8.6e-14  Score=125.21  Aligned_cols=135  Identities=14%  Similarity=0.084  Sum_probs=81.1

Q ss_pred             CCCCCEEEecCCCcccccCchhhhc-CCCCCEEecc----CccCCCC-----CChhccCCcCCcEEEcccCc--CCCCCC
Q 026163          107 FPNLKSFKIHSNYLLSGSIPSEITA-LSMLQTLELP----SSRLTGI-----IPSEMGRLRNLVRLDLSDNY--IGGYIP  174 (242)
Q Consensus       107 l~~L~~L~l~~~~~~~~~~p~~~~~-l~~L~~L~l~----~n~l~~~-----~p~~~~~l~~L~~L~Ls~N~--l~~~~p  174 (242)
                      +++|++|++. ++.+++..+..+.. +++|++|+++    .|++++.     ++..+.++++|++|++++|.  +++..+
T Consensus       377 ~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~  455 (592)
T 3ogk_B          377 CQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL  455 (592)
T ss_dssp             CTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred             CccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence            4555555554 22223333333333 5666666664    4455432     22224456666666665432  443323


Q ss_pred             cCcC-CCCCCCEEEeecCCCcc-ccccccCCCCCCcEEEcccCCCCCC-CcccccCCcCCCEEeCcCCCCC
Q 026163          175 PTLG-RLSKLKILNLSSNFLVG-NIPLTLCHLSKLKILNLSSNSLVGN-IPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       175 ~~~~-~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      ..+. .+++|++|++++|++++ .++..+..+++|++|++++|.+++. ++..+..+++|++|++++|+++
T Consensus       456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence            2332 36788888888888876 3455567788899999999988654 3344567888999999998875

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.26  E-value=3.7e-11  Score=100.68  Aligned_cols=103  Identities=12%  Similarity=0.120  Sum_probs=91.9

Q ss_pred             CCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCC-EEEeecCCCccccccccCCCCCCcEE
Q 026163          132 LSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLK-ILNLSSNFLVGNIPLTLCHLSKLKIL  210 (242)
Q Consensus       132 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~l~~l~~L~~L  210 (242)
                      +++|+++++++|+++...+..|.++.+|+++++.+| ++...+..|.++++|+ .+++.+ .++...+..|.++++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            789999999999999666678999999999999998 7766677899999999 999998 7876667889999999999


Q ss_pred             EcccCCCCCCCcccccCCcCCCEEeC
Q 026163          211 NLSSNSLVGNIPPTLGHLTQLTTLAM  236 (242)
Q Consensus       211 ~L~~N~l~~~~p~~l~~l~~L~~L~l  236 (242)
                      ++++|.++...+..|.++++|+.++.
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EeCCCccCccchhhhcCCcchhhhcc
Confidence            99999999766789999999999874

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.22  E-value=5.9e-13  Score=113.76  Aligned_cols=135  Identities=19%  Similarity=0.163  Sum_probs=100.9

Q ss_pred             CCCCCEEEecCCCcccccCchhhhc-----CCCCCEEeccCccCCCCCChhc-cCCcCCcEEEcccCcCCCCCCcCc---
Q 026163          107 FPNLKSFKIHSNYLLSGSIPSEITA-----LSMLQTLELPSSRLTGIIPSEM-GRLRNLVRLDLSDNYIGGYIPPTL---  177 (242)
Q Consensus       107 l~~L~~L~l~~~~~~~~~~p~~~~~-----l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~---  177 (242)
                      +++|++|++++|++ +......+..     .++|++|++++|.+++.....+ ..+++|++|++++|.++......+   
T Consensus        71 ~~~L~~L~Ls~n~l-~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRM-TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSCC-CHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCC-CHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            46799999997765 3222222332     3699999999999975433333 346789999999999975433333   


Q ss_pred             --CCCCCCCEEEeecCCCccc----cccccCCCCCCcEEEcccCCCCCC----CcccccCCcCCCEEeCcCCCCC
Q 026163          178 --GRLSKLKILNLSSNFLVGN----IPLTLCHLSKLKILNLSSNSLVGN----IPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       178 --~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                        ...++|++|+|++|.+++.    ++..+...++|++|+|++|.+++.    ++..+...++|++|++++|.|+
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence              3468899999999999752    444557789999999999999753    3566778889999999999985

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.17  E-value=7.6e-12  Score=112.46  Aligned_cols=63  Identities=14%  Similarity=0.169  Sum_probs=27.6

Q ss_pred             CCCCCCEEEecCCCccccc----CchhhhcCCCCCEEeccCccCCC----CCChhccCCcCCcEEEcccCcC
Q 026163          106 CFPNLKSFKIHSNYLLSGS----IPSEITALSMLQTLELPSSRLTG----IIPSEMGRLRNLVRLDLSDNYI  169 (242)
Q Consensus       106 ~l~~L~~L~l~~~~~~~~~----~p~~~~~l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l  169 (242)
                      .+++|++|++++|.+ ++.    ++..+..+++|++|++++|.+++    .++..+.++++|++|++++|.+
T Consensus       162 ~~~~L~~L~L~~~~~-~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~  232 (592)
T 3ogk_B          162 HCRKIKTLLMEESSF-SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI  232 (592)
T ss_dssp             HCTTCSEEECTTCEE-ECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred             hCCCCCEEECccccc-cCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence            455555665554432 111    22233444555555555555441    1222233444555555554443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.10  E-value=1.3e-11  Score=110.88  Aligned_cols=109  Identities=17%  Similarity=0.143  Sum_probs=71.9

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcC-CCCCCCEEEecCCCccccc-CchhhhcCCCCCEEeccCccCCCCCChhc---
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFS-CFPNLKSFKIHSNYLLSGS-IPSEITALSMLQTLELPSSRLTGIIPSEM---  153 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~-~l~~L~~L~l~~~~~~~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~---  153 (242)
                      ..+++.|+++++   .+.+.. ...+. .+++|++|++.+|..++.. ++..+.++++|++|++++|.+++..+..+   
T Consensus       104 ~~~L~~L~L~~~---~~~~~~-~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~  179 (594)
T 2p1m_B          104 YTWLEEIRLKRM---VVTDDC-LELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF  179 (594)
T ss_dssp             CTTCCEEEEESC---BCCHHH-HHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred             CCCCCeEEeeCc---EEcHHH-HHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence            457888888887   555443 23333 5789999999877443322 44445678999999999998776544444   


Q ss_pred             -cCCcCCcEEEcccCc--CCCC-CCcCcCCCCCCCEEEeecC
Q 026163          154 -GRLRNLVRLDLSDNY--IGGY-IPPTLGRLSKLKILNLSSN  191 (242)
Q Consensus       154 -~~l~~L~~L~Ls~N~--l~~~-~p~~~~~l~~L~~L~L~~N  191 (242)
                       ..+++|++|++++|.  ++.. ++..+.++++|++|++++|
T Consensus       180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence             356789999998886  2110 1111234678888888877

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=99.09  E-value=1.6e-13  Score=111.62  Aligned_cols=80  Identities=30%  Similarity=0.358  Sum_probs=49.6

Q ss_pred             cCCcCCcEEEcccCcCCC--CCCcCcCCCCCCCEEEeecCCCccccccccCCCC--CCcEEEcccCCCCCCCc-------
Q 026163          154 GRLRNLVRLDLSDNYIGG--YIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLS--KLKILNLSSNSLVGNIP-------  222 (242)
Q Consensus       154 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~--~L~~L~L~~N~l~~~~p-------  222 (242)
                      .++++|++|+|++|++++  .+|..+..+++|+.|+|++|++++.  ..+..+.  +|++|++++|++.+.+|       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            346677777777777765  2334455677777777777777653  1223333  77777777777776544       


Q ss_pred             ccccCCcCCCEEe
Q 026163          223 PTLGHLTQLTTLA  235 (242)
Q Consensus       223 ~~l~~l~~L~~L~  235 (242)
                      ..+..+|+|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            2355677777775

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.08  E-value=3.2e-12  Score=114.93  Aligned_cols=134  Identities=16%  Similarity=0.123  Sum_probs=81.2

Q ss_pred             CCCCCEEEecCCCcccccCchhhh-cCCCCCEEecc--C----ccCCCC-----CChhccCCcCCcEEEcccCcCCCCCC
Q 026163          107 FPNLKSFKIHSNYLLSGSIPSEIT-ALSMLQTLELP--S----SRLTGI-----IPSEMGRLRNLVRLDLSDNYIGGYIP  174 (242)
Q Consensus       107 l~~L~~L~l~~~~~~~~~~p~~~~-~l~~L~~L~l~--~----n~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~~p  174 (242)
                      +++|++|.+..++ +++.....+. .+++|++|+++  +    +.+++.     ++..+..+++|++|++++ .+++..+
T Consensus       371 ~~~L~~L~~~~~~-l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~  448 (594)
T 2p1m_B          371 CPKLESVLYFCRQ-MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF  448 (594)
T ss_dssp             CTTCCEEEEEESC-CCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred             chhHHHHHHhcCC-cCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence            4556666554332 2222222332 46677777776  3    344421     111244566777777755 4443333


Q ss_pred             cCcCC-CCCCCEEEeecCCCcccccccc-CCCCCCcEEEcccCCCCCCCcc-cccCCcCCCEEeCcCCCCC
Q 026163          175 PTLGR-LSKLKILNLSSNFLVGNIPLTL-CHLSKLKILNLSSNSLVGNIPP-TLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       175 ~~~~~-l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~ls~N~lt  242 (242)
                      ..+.. +++|++|++++|.+++..+..+ ..+++|++|++++|.+++.... .+..+++|++|++++|+++
T Consensus       449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            33433 7788899999888876554444 5678899999999988654443 4456888999999988763

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.07  E-value=5e-11  Score=101.35  Aligned_cols=158  Identities=19%  Similarity=0.194  Sum_probs=103.5

Q ss_pred             CCeEEEEecccCCC--Cc----eeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhc
Q 026163           80 GSVIRVSLLWYEND--NM----KGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEM  153 (242)
Q Consensus        80 ~~v~~L~l~~~~~~--~~----~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~  153 (242)
                      .+++.|.+......  .+    .+.+ ...+..+|+|+.|++.++...  .++. + .+++|++|++..+.++......+
T Consensus       139 ~~L~~L~l~~~~~e~~~is~~~~~~L-~~ll~~~P~L~~L~L~g~~~l--~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l  213 (362)
T 2ra8_A          139 AHFEGLFWGDIDFEEQEISWIEQVDL-SPVLDAMPLLNNLKIKGTNNL--SIGK-K-PRPNLKSLEIISGGLPDSVVEDI  213 (362)
T ss_dssp             TTCSEEEECCCCTTTCCGGGCBCCBC-HHHHHTCTTCCEEEEECCBTC--BCCS-C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred             chhhheeecCcchhhcccccccccCH-HHHHhcCCCCcEEEEeCCCCc--eecc-c-cCCCCcEEEEecCCCChHHHHHH
Confidence            47888877554111  11    1122 234567899999999865321  2343 3 37899999999888764433344


Q ss_pred             c--CCcCCcEEEccc--CcCCCC-----CCcCc--CCCCCCCEEEeecCCCcccccccc---CCCCCCcEEEcccCCCCC
Q 026163          154 G--RLRNLVRLDLSD--NYIGGY-----IPPTL--GRLSKLKILNLSSNFLVGNIPLTL---CHLSKLKILNLSSNSLVG  219 (242)
Q Consensus       154 ~--~l~~L~~L~Ls~--N~l~~~-----~p~~~--~~l~~L~~L~L~~N~l~~~~p~~l---~~l~~L~~L~L~~N~l~~  219 (242)
                      .  .+++|++|+|+.  |...+.     +...+  ..+++|++|++.+|.+.+..+..+   ..+++|++|+|+.|.+.+
T Consensus       214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            3  689999999863  222111     11122  357899999999999875443333   357899999999999886


Q ss_pred             C----CcccccCCcCCCEEeCcCCCCC
Q 026163          220 N----IPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       220 ~----~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      .    ++..+..+++|+.|++++|.|+
T Consensus       294 ~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          294 EGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             HHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             HHHHHHHhhcccCCcceEEECCCCcCC
Confidence            4    3334456789999999999875

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.94  E-value=1.1e-10  Score=90.05  Aligned_cols=112  Identities=19%  Similarity=0.173  Sum_probs=49.3

Q ss_pred             hcCCCCCEEeccCc-cCCCC----CChhccCCcCCcEEEcccCcCCCC----CCcCcCCCCCCCEEEeecCCCccc----
Q 026163          130 TALSMLQTLELPSS-RLTGI----IPSEMGRLRNLVRLDLSDNYIGGY----IPPTLGRLSKLKILNLSSNFLVGN----  196 (242)
Q Consensus       130 ~~l~~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----  196 (242)
                      ...+.|++|++++| .+...    +...+...++|++|+|++|.+...    +.+.+...++|++|+|++|.+.+.    
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            33444444444444 44321    122233344455555555544321    112222334455555555555432    


Q ss_pred             cccccCCCCCCcEEEc--ccCCCCCC----CcccccCCcCCCEEeCcCCCC
Q 026163          197 IPLTLCHLSKLKILNL--SSNSLVGN----IPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       197 ~p~~l~~l~~L~~L~L--~~N~l~~~----~p~~l~~l~~L~~L~ls~N~l  241 (242)
                      +...+...+.|++|++  ++|.+...    +.+.+...++|++|++++|.+
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            2333444455555555  55555432    223333445555555555543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.85  E-value=2.7e-08  Score=85.65  Aligned_cols=134  Identities=16%  Similarity=0.144  Sum_probs=65.3

Q ss_pred             eCCCCcCCCCCCCEEEecCCCcccccCc-hhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCC-----CC
Q 026163           99 LGRFNFSCFPNLKSFKIHSNYLLSGSIP-SEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIG-----GY  172 (242)
Q Consensus        99 i~~~~~~~l~~L~~L~l~~~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-----~~  172 (242)
                      ++...|..+++|+.+++.. +. . .++ ..|.+ .+|+.+.+. +.++......|.++++|+.+++.+|.+.     ..
T Consensus       217 I~~~aF~~~~~L~~l~l~~-~l-~-~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I  291 (401)
T 4fdw_A          217 IGSQAFLKTSQLKTIEIPE-NV-S-TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMI  291 (401)
T ss_dssp             ECTTTTTTCTTCCCEECCT-TC-C-EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEE
T ss_pred             ehhhHhhCCCCCCEEecCC-Cc-c-Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEE
Confidence            4355566666666666653 22 1 122 22333 445555552 2333333445555666666666555443     12


Q ss_pred             CCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCC
Q 026163          173 IPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKV  240 (242)
Q Consensus       173 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~  240 (242)
                      .+..|..+++|+.+.+. +.++......|.++++|+.+.+..| ++......|.++ +|+.+++++|.
T Consensus       292 ~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          292 HPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             CTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred             CHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence            33445555556666555 2344333445555555666655433 332333455555 56666655554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.83  E-value=4.7e-08  Score=84.14  Aligned_cols=138  Identities=16%  Similarity=0.149  Sum_probs=74.7

Q ss_pred             eeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEccc-----------
Q 026163           98 ELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSD-----------  166 (242)
Q Consensus        98 ~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~-----------  166 (242)
                      .++...|..+++|+.+++..+++  ..++.......+|+.+.+..+ ++..-...|.++++|+.+++..           
T Consensus       170 ~I~~~aF~~c~~L~~l~l~~n~l--~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~  246 (401)
T 4fdw_A          170 QLKEDIFYYCYNLKKADLSKTKI--TKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFR  246 (401)
T ss_dssp             EECSSTTTTCTTCCEEECTTSCC--SEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTT
T ss_pred             EehHHHhhCcccCCeeecCCCcc--eEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCccccccc
Confidence            34356677777777777764433  123322112344444444422 3322333444444444444443           


Q ss_pred             ----------CcCCCCCCcCcCCCCCCCEEEeecCCCc-----cccccccCCCCCCcEEEcccCCCCCCCcccccCCcCC
Q 026163          167 ----------NYIGGYIPPTLGRLSKLKILNLSSNFLV-----GNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQL  231 (242)
Q Consensus       167 ----------N~l~~~~p~~~~~l~~L~~L~L~~N~l~-----~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  231 (242)
                                +.++......|.++++|+.+.+.+|.+.     ...+..|..+++|+.+++. +.++......|.++++|
T Consensus       247 ~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L  325 (401)
T 4fdw_A          247 ESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKV  325 (401)
T ss_dssp             TCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSC
T ss_pred             cCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCc
Confidence                      2333333455667777777777766654     2344567777777777776 34554444667777777


Q ss_pred             CEEeCcCC
Q 026163          232 TTLAMSNK  239 (242)
Q Consensus       232 ~~L~ls~N  239 (242)
                      +.+++..|
T Consensus       326 ~~l~lp~~  333 (401)
T 4fdw_A          326 TQLTIPAN  333 (401)
T ss_dssp             CEEEECTT
T ss_pred             cEEEECcc
Confidence            77777544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.80  E-value=3e-09  Score=90.35  Aligned_cols=158  Identities=15%  Similarity=0.133  Sum_probs=104.1

Q ss_pred             CCCCeEEEEecccCCCCcee--------eeCCCCcCCCCCCCEEEecCCCc----c----cccCchhhhcCCCCCEEecc
Q 026163           78 SAGSVIRVSLLWYENDNMKG--------ELGRFNFSCFPNLKSFKIHSNYL----L----SGSIPSEITALSMLQTLELP  141 (242)
Q Consensus        78 ~~~~v~~L~l~~~~~~~~~~--------~i~~~~~~~l~~L~~L~l~~~~~----~----~~~~p~~~~~l~~L~~L~l~  141 (242)
                      ...+|+.|.+...   .+.+        .+ ......+++|+.|.+.+...    +    .+.+...+..+|+|+.|+++
T Consensus       105 ~~~~v~~L~lg~~---~~~~~~~~~~~~~L-~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~  180 (362)
T 2ra8_A          105 KLPSLKQITIGXW---GYEGEDCSDIADGI-VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIK  180 (362)
T ss_dssp             TGGGCSEEEECCC---CSSSCCSHHHHHHH-HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEE
T ss_pred             CchhcceEEEccc---ccCCCcHHHHHHHH-HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEe
Confidence            3446777877654   3221        11 23355788999999974322    1    12355667889999999999


Q ss_pred             CccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcC--CCCCCCEEEeec--CCCccc-----ccccc--CCCCCCcEE
Q 026163          142 SSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLG--RLSKLKILNLSS--NFLVGN-----IPLTL--CHLSKLKIL  210 (242)
Q Consensus       142 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~L~~--N~l~~~-----~p~~l--~~l~~L~~L  210 (242)
                      +|.-. .++. + .+++|++|++..+.+.......+.  .+++|++|+|+.  |...+.     +...+  ..+|+|++|
T Consensus       181 g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L  257 (362)
T 2ra8_A          181 GTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWL  257 (362)
T ss_dssp             CCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEE
T ss_pred             CCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEE
Confidence            88422 2333 3 388999999999887643323333  689999999964  221111     11122  357999999


Q ss_pred             EcccCCCCCCCccccc---CCcCCCEEeCcCCCCC
Q 026163          211 NLSSNSLVGNIPPTLG---HLTQLTTLAMSNKVAI  242 (242)
Q Consensus       211 ~L~~N~l~~~~p~~l~---~l~~L~~L~ls~N~lt  242 (242)
                      ++.+|.+.+..+..+.   .+++|++|+|+.|.++
T Consensus       258 ~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~  292 (362)
T 2ra8_A          258 GIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT  292 (362)
T ss_dssp             EEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred             eCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence            9999999754444443   5789999999999874

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.76  E-value=1.1e-09  Score=84.26  Aligned_cols=118  Identities=14%  Similarity=0.147  Sum_probs=88.9

Q ss_pred             CCCcCCCCCCCEEEecCC-Ccccc---cCchhhhcCCCCCEEeccCccCCCC----CChhccCCcCCcEEEcccCcCCCC
Q 026163          101 RFNFSCFPNLKSFKIHSN-YLLSG---SIPSEITALSMLQTLELPSSRLTGI----IPSEMGRLRNLVRLDLSDNYIGGY  172 (242)
Q Consensus       101 ~~~~~~l~~L~~L~l~~~-~~~~~---~~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~  172 (242)
                      ...+...+.|++|++++| .+-..   .+...+...++|++|+|++|.+.+.    +...+...++|++|+|++|.|+..
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            345667889999999977 54221   1334466778999999999999743    233455568899999999999743


Q ss_pred             ----CCcCcCCCCCCCEEEe--ecCCCccc----cccccCCCCCCcEEEcccCCCC
Q 026163          173 ----IPPTLGRLSKLKILNL--SSNFLVGN----IPLTLCHLSKLKILNLSSNSLV  218 (242)
Q Consensus       173 ----~p~~~~~l~~L~~L~L--~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~  218 (242)
                          +...+...++|++|+|  ++|.+...    +...+...++|++|++++|.+.
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence                3556777889999999  88999864    3345566789999999999885

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.75  E-value=8.1e-10  Score=89.76  Aligned_cols=80  Identities=28%  Similarity=0.275  Sum_probs=65.6

Q ss_pred             hcCCCCCEEeccCccCCC--CCChhccCCcCCcEEEcccCcCCCCCCcCcCCCC--CCCEEEeecCCCcccccc------
Q 026163          130 TALSMLQTLELPSSRLTG--IIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLS--KLKILNLSSNFLVGNIPL------  199 (242)
Q Consensus       130 ~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~p~------  199 (242)
                      .++++|++|+|++|++++  .+|..+..+++|++|+|++|+|++.  ..+..+.  +|++|+|++|.+.+.+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            568999999999999997  4456677899999999999999854  3344444  999999999999976552      


Q ss_pred             -ccCCCCCCcEEE
Q 026163          200 -TLCHLSKLKILN  211 (242)
Q Consensus       200 -~l~~l~~L~~L~  211 (242)
                       .+..+|+|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             367789999887

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.46  E-value=5.1e-08  Score=74.00  Aligned_cols=87  Identities=20%  Similarity=0.164  Sum_probs=67.8

Q ss_pred             CCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCc-CCCCCCcCcCCC----CCCCEEEeecCC-CccccccccCCCC
Q 026163          132 LSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNY-IGGYIPPTLGRL----SKLKILNLSSNF-LVGNIPLTLCHLS  205 (242)
Q Consensus       132 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~L~~N~-l~~~~p~~l~~l~  205 (242)
                      -.+|++||++++.+++.--..+.++++|++|+|++|. ++..--..+..+    ++|++|++++|. +++..-..+.+++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            3579999999999886655667899999999999985 664333345553    479999999984 8875556678899


Q ss_pred             CCcEEEcccCC-CC
Q 026163          206 KLKILNLSSNS-LV  218 (242)
Q Consensus       206 ~L~~L~L~~N~-l~  218 (242)
                      +|++|+++++. ++
T Consensus       140 ~L~~L~L~~c~~It  153 (176)
T 3e4g_A          140 NLKYLFLSDLPGVK  153 (176)
T ss_dssp             TCCEEEEESCTTCC
T ss_pred             CCCEEECCCCCCCC
Confidence            99999999986 44

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.40  E-value=4.6e-08  Score=74.27  Aligned_cols=86  Identities=12%  Similarity=0.171  Sum_probs=63.3

Q ss_pred             CCCCEEEecCCCcccccCchhhhcCCCCCEEeccCcc-CCCCCChhccCC----cCCcEEEcccCc-CCCCCCcCcCCCC
Q 026163          108 PNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSR-LTGIIPSEMGRL----RNLVRLDLSDNY-IGGYIPPTLGRLS  181 (242)
Q Consensus       108 ~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~~~~l~  181 (242)
                      .+|+.||++++.+....+ ..+..+++|++|+|++|. +++.--..+..+    ++|++|++++|. ++..--..+.+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            469999999887543333 346789999999999985 665444455554    479999999985 7654444567889


Q ss_pred             CCCEEEeecCC-Cc
Q 026163          182 KLKILNLSSNF-LV  194 (242)
Q Consensus       182 ~L~~L~L~~N~-l~  194 (242)
                      +|++|+++++. ++
T Consensus       140 ~L~~L~L~~c~~It  153 (176)
T 3e4g_A          140 NLKYLFLSDLPGVK  153 (176)
T ss_dssp             TCCEEEEESCTTCC
T ss_pred             CCCEEECCCCCCCC
Confidence            99999999985 54

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.14  E-value=1.3e-05  Score=68.51  Aligned_cols=136  Identities=15%  Similarity=0.190  Sum_probs=89.2

Q ss_pred             eeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCc
Q 026163           98 ELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTL  177 (242)
Q Consensus        98 ~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  177 (242)
                      .+....|..+..|+.+.+..+ .. ..-...|.+++.|+.+.+. +.++......|.++.+|+.+++..+ ++......|
T Consensus       255 ~i~~~aF~~c~~L~~i~lp~~-~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF  330 (394)
T 4gt6_A          255 RIETHAFDSCAYLASVKMPDS-VV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAF  330 (394)
T ss_dssp             EECTTTTTTCSSCCEEECCTT-CC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred             EcccceeeecccccEEecccc-cc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHh
Confidence            344567888888888888733 21 2223457788889998886 4455445567888899999999765 553445678


Q ss_pred             CCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163          178 GRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       178 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l  241 (242)
                      .++.+|+.+.+..+ ++......|.++++|+.+++.++...   ...+....+|+.+.+..|.+
T Consensus       331 ~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          331 AGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred             hCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence            88899999998654 66455667889999999998887543   24566777888888877654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.02  E-value=6.3e-05  Score=63.64  Aligned_cols=132  Identities=17%  Similarity=0.161  Sum_probs=71.2

Q ss_pred             CCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCC
Q 026163          102 FNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLS  181 (242)
Q Consensus       102 ~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  181 (242)
                      ..+....+++.+.+..+ . ...-...+..+..|+.+.+..+ ++..-...|.++.+|+.+.+..+ ++......|..+.
T Consensus       211 ~~f~~~~~l~~i~~~~~-~-~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~  286 (379)
T 4h09_A          211 YGFSYGKNLKKITITSG-V-TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS  286 (379)
T ss_dssp             TTTTTCSSCSEEECCTT-C-CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT
T ss_pred             cccccccccceeeeccc-e-eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc
Confidence            34455556666666522 2 1112233556666666666554 33233445556666666666443 3323334566666


Q ss_pred             CCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163          182 KLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN  238 (242)
Q Consensus       182 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~  238 (242)
                      +|+.+.+.++.++......|.++.+|+.+.+..+ ++..-..+|.++++|+.+.+..
T Consensus       287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            6666666666666444555666666666666543 4323334566666666666543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.00  E-value=8e-05  Score=63.51  Aligned_cols=130  Identities=15%  Similarity=0.053  Sum_probs=66.8

Q ss_pred             CCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCC
Q 026163          101 RFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRL  180 (242)
Q Consensus       101 ~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  180 (242)
                      ...+..+..++.+.+..+..  ......|..+..++.+....+.+.   ...+..+.+|+.+.+..+ ++......|.++
T Consensus       246 ~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c  319 (394)
T 4fs7_A          246 KSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESC  319 (394)
T ss_dssp             SSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTC
T ss_pred             cccccccccceeEEcCCCcc--eeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCC
Confidence            45566667777777663321  112223455555555555443321   123455556666666543 332334445666


Q ss_pred             CCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163          181 SKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN  238 (242)
Q Consensus       181 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~  238 (242)
                      .+|+.+++..+ ++......|.++++|+.+++..+ ++.....+|.++++|+.+++..
T Consensus       320 ~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          320 TSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             TTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             CCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence            66666666433 44333445666666666666544 4433334556666666665543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.86  E-value=2.9e-06  Score=65.53  Aligned_cols=110  Identities=13%  Similarity=0.160  Sum_probs=54.3

Q ss_pred             cCCCCCEEeccCc-cCCCC----CChhccCCcCCcEEEcccCcCCCCC----CcCcCCCCCCCEEEeecCCCccc----c
Q 026163          131 ALSMLQTLELPSS-RLTGI----IPSEMGRLRNLVRLDLSDNYIGGYI----PPTLGRLSKLKILNLSSNFLVGN----I  197 (242)
Q Consensus       131 ~l~~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~----~  197 (242)
                      +-+.|++|+|++| ++.+.    +...+..-..|++|+|++|+|....    .+.+..-+.|++|+|+.|.|.+.    +
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            3445556666553 44321    2223344455666666666654221    12223345566666666666542    2


Q ss_pred             ccccCCCCCCcEEEcccC---CCCC----CCcccccCCcCCCEEeCcCCC
Q 026163          198 PLTLCHLSKLKILNLSSN---SLVG----NIPPTLGHLTQLTTLAMSNKV  240 (242)
Q Consensus       198 p~~l~~l~~L~~L~L~~N---~l~~----~~p~~l~~l~~L~~L~ls~N~  240 (242)
                      .+.+..-+.|++|+|++|   .+..    .+.+.+..-+.|+.|+++.|.
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            233444455666666644   2221    123344555666666666553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.78  E-value=0.00015  Score=61.81  Aligned_cols=109  Identities=13%  Similarity=0.191  Sum_probs=85.2

Q ss_pred             hhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCC
Q 026163          128 EITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKL  207 (242)
Q Consensus       128 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  207 (242)
                      .|.++..|+.+.+..+..+ .....|.++..|+.+.+. +.++......|.++.+|+.+.+..+ ++......|.++.+|
T Consensus       260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             eeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence            4677888999988766543 445677889999999996 4455455567899999999999865 664556789999999


Q ss_pred             cEEEcccCCCCCCCcccccCCcCCCEEeCcCCC
Q 026163          208 KILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKV  240 (242)
Q Consensus       208 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~  240 (242)
                      +.+.+..+ ++..-..+|.++++|+.+++.+|.
T Consensus       337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             CEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            99999755 664455789999999999998764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.78  E-value=0.00021  Score=60.92  Aligned_cols=127  Identities=17%  Similarity=0.095  Sum_probs=97.0

Q ss_pred             eCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcC
Q 026163           99 LGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLG  178 (242)
Q Consensus        99 i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  178 (242)
                      +....|.....++.+......+    ....|..+.+|+.+.+..+ ++..-...|.++.+|+.+++..+ ++......|.
T Consensus       267 i~~~~F~~~~~l~~~~~~~~~i----~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~  340 (394)
T 4fs7_A          267 IGGSLFYNCSGLKKVIYGSVIV----PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFR  340 (394)
T ss_dssp             ECSCTTTTCTTCCEEEECSSEE----CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTT
T ss_pred             eeccccccccccceeccCceee----ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhcc
Confidence            4466788889999988873321    1234788999999999765 55455667889999999999755 6645567899


Q ss_pred             CCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEE
Q 026163          179 RLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTL  234 (242)
Q Consensus       179 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  234 (242)
                      ++.+|+.+.+..+ ++......|.++++|+.+++..+ +. .+...+.++++|+.+
T Consensus       341 ~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          341 GCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             CCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            9999999999877 66566678999999999999765 33 345678888888765

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.72  E-value=0.00022  Score=60.27  Aligned_cols=127  Identities=14%  Similarity=0.108  Sum_probs=93.2

Q ss_pred             eeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCc
Q 026163           98 ELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTL  177 (242)
Q Consensus        98 ~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  177 (242)
                      .++...+..+..|+.+.+..+ . ...-...|.++.+|+.+.+..+ ++......|.++.+|+.+.+.++.++......|
T Consensus       230 ~i~~~~f~~~~~L~~i~lp~~-v-~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF  306 (379)
T 4h09_A          230 TLGDGAFYGMKALDEIAIPKN-V-TSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVF  306 (379)
T ss_dssp             EECTTTTTTCSSCCEEEECTT-C-CEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTT
T ss_pred             EEccccccCCccceEEEcCCC-c-cEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhh
Confidence            344667888899999999743 3 2222345788999999999754 553445678899999999999988885666789


Q ss_pred             CCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCc
Q 026163          178 GRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLT  229 (242)
Q Consensus       178 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  229 (242)
                      .++.+|+.+.+..+ ++......|.++++|+.+.+..+ ++..-..+|.+++
T Consensus       307 ~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          307 MDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             TTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             cCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            99999999999755 66455667999999999988654 4423334555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.40  E-value=0.00031  Score=50.39  Aligned_cols=57  Identities=21%  Similarity=0.194  Sum_probs=41.9

Q ss_pred             cEEEcccCcCC-CCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCC
Q 026163          160 VRLDLSDNYIG-GYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV  218 (242)
Q Consensus       160 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  218 (242)
                      ..++-+++.++ ..+|..+.  ++|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36778888876 34554432  36888888888888655666788888888888888875

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.30  E-value=5.1e-05  Score=58.47  Aligned_cols=87  Identities=10%  Similarity=0.108  Sum_probs=66.2

Q ss_pred             ccCCcCCcEEEcccC-cCCCC----CCcCcCCCCCCCEEEeecCCCcccc----ccccCCCCCCcEEEcccCCCCCC---
Q 026163          153 MGRLRNLVRLDLSDN-YIGGY----IPPTLGRLSKLKILNLSSNFLVGNI----PLTLCHLSKLKILNLSSNSLVGN---  220 (242)
Q Consensus       153 ~~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~----p~~l~~l~~L~~L~L~~N~l~~~---  220 (242)
                      +.+-+.|++|+|++| +|...    +.+.+..-+.|+.|+|++|++.+..    .+.+..-+.|++|+|++|.|.+.   
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            455678999999986 77532    3345666789999999999998643    33455668899999999999853   


Q ss_pred             -CcccccCCcCCCEEeCcCC
Q 026163          221 -IPPTLGHLTQLTTLAMSNK  239 (242)
Q Consensus       221 -~p~~l~~l~~L~~L~ls~N  239 (242)
                       +.+.+..-+.|++|+|++|
T Consensus       117 ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhhCCceeEEECCCC
Confidence             3456667788999999865

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.21  E-value=0.00065  Score=48.68  Aligned_cols=57  Identities=21%  Similarity=0.264  Sum_probs=46.1

Q ss_pred             CEEeccCccCC-CCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCc
Q 026163          136 QTLELPSSRLT-GIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLV  194 (242)
Q Consensus       136 ~~L~l~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  194 (242)
                      ..++-++++++ ..+|..+.  ++|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47888888886 34565432  47999999999999666677899999999999999885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	242
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-06
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.8 bits (159), Expect = 4e-13
 Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 6/114 (5%)

Query: 102 FNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVR 161
            N S    L +              S I+ L  L  L L  + ++ I P  +  L  L R
Sbjct: 276 SNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 333

Query: 162 LDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSN 215
           L  ++N +      +L  L+ +  L+   N +    P  L +L+++  L L+  
Sbjct: 334 LFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 63.5 bits (153), Expect = 2e-12
 Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 29/156 (18%)

Query: 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIP------------ 150
             +   NL    + +N + S   P  ++ L+ L  L+L +++++ I P            
Sbjct: 236 TLASLTNLTDLDLANNQI-SNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLEL 292

Query: 151 --------SEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLC 202
                   S +  L+NL  L L  N I    P  +  L+KL+ L  ++N +      +L 
Sbjct: 293 NENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLA 348

Query: 203 HLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
           +L+ +  L+   N +    P  L +LT++T L +++
Sbjct: 349 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 8e-06
 Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 156 LRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSN 215
           L   ++  L    +   +  +   L ++  L      +  +I   + +L+ L  +N S+N
Sbjct: 21  LAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNN 76

Query: 216 SLVGNIPPTLGHLTQLTTLAMSN 238
            L    P  L +LT+L  + M+N
Sbjct: 77  QLTDITP--LKNLTKLVDILMNN 97

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 130 TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLS 189
           TAL+      L  + +T  +      L  +  L      I       +  L+ L  +N S
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTD--LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFS 74

Query: 190 SNFLVGNIPLTLCHLSKLKILNLS 213
           +N L    P  L +L+KL  + ++
Sbjct: 75  NNQLTDITP--LKNLTKLVDILMN 96

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.8 bits (138), Expect = 1e-10
 Identities = 28/153 (18%), Positives = 57/153 (37%), Gaps = 1/153 (0%)

Query: 50  ITGWWYDNWATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPN 109
           I+G   D++ +     +                     L + + +     G  +     +
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD 220

Query: 110 LKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYI 169
             + KIH           ++     L  L+L ++R+ G +P  + +L+ L  L++S N +
Sbjct: 221 KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

Query: 170 GGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLC 202
            G I P  G L +  +   ++N  +   PL  C
Sbjct: 281 CGEI-PQGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 54.8 bits (130), Expect = 1e-09
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
           DL +N I G +P  L +L  L  LN+S N L G IP    +L +  +   ++N  +   P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 51.7 bits (122), Expect = 2e-08
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 187 NLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
           +L +N + G +P  L  L  L  LN+S N+L G I P  G+L +    A +N
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYAN 300

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 50.1 bits (118), Expect = 5e-08
 Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 5/169 (2%)

Query: 44  EREALLI--TGWWYDNWATSGNYTSDHC--KWTGIRCNSAGSVIRVSLLWYENDNMKGEL 99
           +++ALL            +S   T+D C   W G+ C++     RV+ L     N+    
Sbjct: 7   DKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPY 66

Query: 100 GRFN-FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN 158
              +  +  P L    I     L G IP  I  L+ L  L +  + ++G IP  + +++ 
Sbjct: 67  PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126

Query: 159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKL 207
           LV LD S N + G +PP++  L  L  +    N + G IP +    SKL
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.3 bits (129), Expect = 2e-09
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 2/116 (1%)

Query: 124 SIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKL 183
            +P ++        L+L ++++T I   +   L+NL  L L +N I    P     L KL
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 184 KILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNK 239
           + L LS N L          L +L++       +  ++   L  +  +       K
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 137

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.7 bits (112), Expect = 4e-07
 Identities = 26/171 (15%), Positives = 58/171 (33%), Gaps = 20/171 (11%)

Query: 68  HCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPS 127
            C    ++C+  G                  L +      P+     + +N + +     
Sbjct: 9   QCHLRVVQCSDLG------------------LEKVPKDLPPDTALLDLQNNKI-TEIKDG 49

Query: 128 EITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILN 187
           +   L  L TL L +++++ I P     L  L RL LS N +          L +L++  
Sbjct: 50  DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHE 109

Query: 188 LSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
                +  ++   L  +  +  L  +     G        + +L+ + +++
Sbjct: 110 NEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQGMKKLSYIRIAD 159

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 32/151 (21%), Positives = 61/151 (40%), Gaps = 5/151 (3%)

Query: 89  WYENDNMKGELGRFNFSCFPNLKSFKIHSNYL-LSGSIPSEITALSMLQTLELPSSRLTG 147
              ++N   ++ +  F+    +   ++ +N L  SG        +  L  + +  + +T 
Sbjct: 105 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 164

Query: 148 IIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKL 207
           I     G   +L  L L  N I      +L  L+ L  L LS N +      +L +   L
Sbjct: 165 IPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 221

Query: 208 KILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
           + L+L++N LV  +P  L     +  + + N
Sbjct: 222 RELHLNNNKLV-KVPGGLADHKYIQVVYLHN 251

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.6 bits (96), Expect = 4e-05
 Identities = 25/202 (12%), Positives = 63/202 (31%), Gaps = 11/202 (5%)

Query: 42  QLEREALLITGWWYDNWATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKG-ELG 100
           +L      IT      +               ++ +   +     +       +    + 
Sbjct: 104 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 163

Query: 101 RFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLV 160
                  P+L    +  N + +    + +  L+ L  L L  + ++ +    +    +L 
Sbjct: 164 TIPQGLPPSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 222

Query: 161 RLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFL------VGNIPLTLCHLSKLKILNLSS 214
            L L++N +   +P  L     ++++ L +N +          P      +    ++L S
Sbjct: 223 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281

Query: 215 NSL-VGNIPP-TLGHLTQLTTL 234
           N +    I P T   +     +
Sbjct: 282 NPVQYWEIQPSTFRCVYVRAAV 303

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 3e-07
 Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 9/93 (9%)

Query: 109 NLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGI----IPSEMGRLRNLVRLDL 164
           +++S  I    L        +  L   Q + L    LT      I S +     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 165 SDNYIGGYIPPTLGRL-----SKLKILNLSSNF 192
             N +G      + +       K++ L+L +  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 7e-07
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 10/91 (10%)

Query: 158 NLVRLDLSDNYIG-GYIPPTLGRLSKLKILNLSSNFL----VGNIPLTLCHLSKLKILNL 212
           ++  LD+    +        L  L + +++ L    L      +I   L     L  LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 213 SSNSLVGNIPPTLGHL-----TQLTTLAMSN 238
            SN L       +         ++  L++ N
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 4e-06
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 10/91 (10%)

Query: 135 LQTLELPSSRLTGIIPSEM-GRLRNLVRLDLSDNYIGG----YIPPTLGRLSKLKILNLS 189
           +Q+L++    L+    +E+   L+    + L D  +       I   L     L  LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 190 SNFLVGNIPLTLCHL-----SKLKILNLSSN 215
           SN L       +         K++ L+L + 
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 6e-06
 Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 9/82 (10%)

Query: 158 NLVRLDLSDNYIGG----YIPPTLGRLSKLKILNLSSNFLVGNIPLTLC-----HLSKLK 208
            L  L L+D  +       +  TL     L+ L+LS+N L     L L          L+
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 209 ILNLSSNSLVGNIPPTLGHLTQ 230
            L L        +   L  L +
Sbjct: 430 QLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 3e-05
 Identities = 23/171 (13%), Positives = 45/171 (26%), Gaps = 13/171 (7%)

Query: 53  WWYDNWATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKS 112
               N                  C      ++         +    +   N        S
Sbjct: 289 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 348

Query: 113 FKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGI----IPSEMGRLRNLVRLDLSDNY 168
                +  +           S+L+ L L    ++      + + +    +L  LDLS+N 
Sbjct: 349 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 408

Query: 169 IGGYIPPTLGR-----LSKLKILNLSSNFLVGNIPLTLCHLSK----LKIL 210
           +G      L          L+ L L   +    +   L  L K    L+++
Sbjct: 409 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 5e-07
 Identities = 33/141 (23%), Positives = 49/141 (34%), Gaps = 2/141 (1%)

Query: 89  WYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGI 148
            Y  DN    L    F    NL    +H N + S         L  L  L L  +R+  +
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 149 IPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLK 208
            P     L  L+ L L  N +       L  L  L+ L L+ N  V +        + L+
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQ 251

Query: 209 ILNLSSNSLVGNIPPTLGHLT 229
               SS+ +  ++P  L    
Sbjct: 252 KFRGSSSEVPCSLPQRLAGRD 272

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 2e-06
 Identities = 31/181 (17%), Positives = 60/181 (33%), Gaps = 12/181 (6%)

Query: 46  EALLITGWWYDNWATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYEN-------DNMKGE 98
             L +                   ++  ++ N+  ++   +     N        N    
Sbjct: 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167

Query: 99  LGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN 158
           +    F    +L    +H N +     P     L  L TL L ++ L+ +    +  LR 
Sbjct: 168 VPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226

Query: 159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV 218
           L  L L+DN             + L+    SS+ +  ++P     L+   +  L++N L 
Sbjct: 227 LQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQ 282

Query: 219 G 219
           G
Sbjct: 283 G 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 2e-06
 Identities = 36/173 (20%), Positives = 59/173 (34%), Gaps = 2/173 (1%)

Query: 50  ITGWWYDNWATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPN 109
               +           SD+ +   +   +   + R+  L  +   ++ ELG   F     
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAA 130

Query: 110 LKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYI 169
           L+   +  N L           L  L  L L  +R++ +       L +L RL L  N +
Sbjct: 131 LQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 170 GGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222
               P     L +L  L L +N L       L  L  L+ L L+ N  V +  
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 31/138 (22%), Positives = 46/138 (33%), Gaps = 27/138 (19%)

Query: 124 SIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDN---------------- 167
           ++P  I A    Q + L  +R++ +  +     RNL  L L  N                
Sbjct: 25  AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 168 ---------YIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV 218
                     +    P T   L +L  L+L    L    P     L+ L+ L L  N+L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 219 GNIPPTLGHLTQLTTLAM 236
                T   L  LT L +
Sbjct: 143 ALPDDTFRDLGNLTHLFL 160

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 1e-06
 Identities = 17/135 (12%), Positives = 39/135 (28%), Gaps = 10/135 (7%)

Query: 53  WWYDNWATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKS 112
               +   +                +  S +          N      R      P+L+ 
Sbjct: 229 LNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEE 288

Query: 113 FKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGY 172
             + +N L+   +P+       L+ L    + L  +        +NL +L +  N +   
Sbjct: 289 LNVSNNKLI--ELPALPPR---LERLIASFNHLAEVPEL----PQNLKQLHVEYNPLRE- 338

Query: 173 IPPTLGRLSKLKILN 187
            P     +  L++ +
Sbjct: 339 FPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 8e-06
 Identities = 28/178 (15%), Positives = 54/178 (30%), Gaps = 10/178 (5%)

Query: 53  WWYDNWATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKS 112
                 +                     ++   + L     ++   L   N         
Sbjct: 180 LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDL 239

Query: 113 FKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGY 172
            ++  +        +  + LS L       +  +  I S      +L  L++S+N +   
Sbjct: 240 PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-E 298

Query: 173 IPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSL--VGNIPPTLGHL 228
           +P    RL +L     S N L   +P        LK L++  N L    +IP ++  L
Sbjct: 299 LPALPPRLERL---IASFNHL-AEVP---ELPQNLKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 3e-04
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 164 LSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPP 223
              N     I         L+ LN+S+N L+  +P       +L+ L  S N L   +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP---ALPPRLERLIASFNHL-AEVPE 321

Query: 224 TLGHLTQL 231
              +L QL
Sbjct: 322 LPQNLKQL 329

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.0 bits (102), Expect = 4e-06
 Identities = 37/169 (21%), Positives = 65/169 (38%), Gaps = 9/169 (5%)

Query: 68  HCKWTGIRCNSAG--SV-----IRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYL 120
           HC+ T + C   G   +     +  + L   ++ +        F   P+L   ++  N L
Sbjct: 7   HCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL 66

Query: 121 LSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRL 180
                 +   A S +Q L+L  +++  I       L  L  L+L DN I   +P +   L
Sbjct: 67  TGIEPNAFEGA-SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125

Query: 181 SKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLT 229
           + L  LNL+SN    N  L       L+  +L+  +     P  +  + 
Sbjct: 126 NSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPSKVRDVQ 173

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 4e-06
 Identities = 28/120 (23%), Positives = 43/120 (35%), Gaps = 10/120 (8%)

Query: 124 SIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGY--IPPTLGRLS 181
               ++ A ++   L   SS     +      +  L+ L+LS+N +     +   + +  
Sbjct: 33  RSDPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAP 91

Query: 182 KLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPT-------LGHLTQLTTL 234
            LKILNLS N L     L      KL+ L L  NSL                   +L  L
Sbjct: 92  NLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRL 151

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 6e-05
 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 6/104 (5%)

Query: 136 QTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVG 195
           + L L    LT +    + +L  +  LDLS N +    PP L  L  L++L  S N    
Sbjct: 1   RVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNA--L 55

Query: 196 NIPLTLCHLSKLKILNLSSNSLVG-NIPPTLGHLTQLTTLAMSN 238
                + +L +L+ L L +N L        L    +L  L +  
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 99

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 9e-05
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 174 PPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTT 233
              L  LSKL  L    N +    PL    L  L  ++L +N +    P  L + + L  
Sbjct: 166 LTPLANLSKLTTLKADDNKISDISPL--ASLPNLIEVHLKNNQISDVSP--LANTSNLFI 221

Query: 234 LAMSN 238
           + ++N
Sbjct: 222 VTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 1e-04
 Identities = 30/165 (18%), Positives = 49/165 (29%), Gaps = 4/165 (2%)

Query: 49  LITGWWYDNWATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFP 108
           LI     DN  T      +  K T +  +        ++   ++               P
Sbjct: 65  LIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP 124

Query: 109 NLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNY 168
                 +   YL    I +      +     L          + +  L  L  L   DN 
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK 184

Query: 169 IGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLS 213
           I    P  L  L  L  ++L +N +    PL   + S L I+ L+
Sbjct: 185 ISDISP--LASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 9e-04
 Identities = 15/114 (13%), Positives = 38/114 (33%), Gaps = 5/114 (4%)

Query: 53  WWYDNWATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKS 112
              D    +G            +  +   +  ++ L Y +            +    L +
Sbjct: 118 QITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTT 177

Query: 113 FKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSD 166
            K   N +      S + +L  L  + L +++++ + P  +    NL  + L++
Sbjct: 178 LKADDNKISD---ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 156 LRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSN 215
           L N +++    + +   +  T   L  +  L+     +   I   + +L+ L  L L  N
Sbjct: 18  LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDN 73

Query: 216 SL 217
            +
Sbjct: 74  QI 75

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 1e-04
 Identities = 18/171 (10%), Positives = 43/171 (25%), Gaps = 3/171 (1%)

Query: 53  WWYDNWATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKS 112
            + +                 I   +  ++  +  L   N  +K             +  
Sbjct: 73  VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 132

Query: 113 FKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGY 172
               +  + +    S +        L L  + +  I        +        +N +   
Sbjct: 133 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEEL 192

Query: 173 IPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPP 223
                   S   IL++S   +       L +L KL+  +  +      +P 
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 8/39 (20%), Positives = 14/39 (35%)

Query: 200 TLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238
                S   IL++S   +       L +L +L   +  N
Sbjct: 196 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 234

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 1e-04
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 3/96 (3%)

Query: 117 SNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGY-IPP 175
           +   L   +   + +   +     P S +   +       R +  +DLS++ I    +  
Sbjct: 8   TGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLHG 65

Query: 176 TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILN 211
            L + SKL+ L+L    L   I  TL   S L  LN
Sbjct: 66  ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 1e-04
 Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 128 EITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILN 187
           E++ ++    +      LT + P ++ +  +   L LS+N +  +   TL   ++L  LN
Sbjct: 5   EVSKVASHLEVNCDKRNLTAL-PPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 188 LSSNF 192
           L    
Sbjct: 62  LDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 18/158 (11%), Positives = 40/158 (25%), Gaps = 2/158 (1%)

Query: 35  GLLSSPVQLEREALLITGWWYDNWATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDN 94
             L    +L +  L            +               +       +  L   + +
Sbjct: 49  ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108

Query: 95  MKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSS-RLTGIIPSEM 153
                     +     +  +++       ++P  +   +        ++  LT +    +
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168

Query: 154 GRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSN 191
             L NL  L L +N +   IP        L    L  N
Sbjct: 169 NGLENLDTLLLQENSL-YTIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 4e-04
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 152 EMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILN 211
           E+ ++ + + ++     +   +PP L +     IL+LS N L      TL   ++L  LN
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 212 LSSNS 216
           L    
Sbjct: 62  LDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 148 IIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKL 207
           + P  +     L +L L++N +       L  L  L  L L  N L   IP        L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197

Query: 208 KILNLSSNSL 217
               L  N  
Sbjct: 198 PFAFLHGNPW 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 8/65 (12%), Positives = 24/65 (36%), Gaps = 4/65 (6%)

Query: 156 LRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSN 215
               ++ +L    +   +  T   L+ +  +  +++ +     +   +L  +  L L+ N
Sbjct: 23  FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQGI--QYLPNVTKLFLNGN 78

Query: 216 SLVGN 220
            L   
Sbjct: 79  KLTDI 83

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 31/142 (21%), Positives = 45/142 (31%), Gaps = 3/142 (2%)

Query: 50  ITGWWYDNWATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPN 109
           +T  + +    +      + K  G        V  +S L          L     S    
Sbjct: 70  VTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING 129

Query: 110 LKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGII-PSEMGRLRNLVRLDLSDNY 168
           L       +  L  +  ++IT LS L  L+  S     I     +  L  L  L LS N+
Sbjct: 130 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH 189

Query: 169 IGGYIPPTLGRLSKLKILNLSS 190
           I       L  L  L +L L S
Sbjct: 190 ISD--LRALAGLKNLDVLELFS 209

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.2 bits (84), Expect = 0.001
 Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 4/73 (5%)

Query: 149 IPSEMGRLRNLVRLDLSDNYIGG----YIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHL 204
           + + +    ++  + LS N IG     ++   +     L+I   S  F           L
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82

Query: 205 SKLKILNLSSNSL 217
             L    L    L
Sbjct: 83  RLLLQALLKCPKL 95

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 12/88 (13%), Positives = 27/88 (30%), Gaps = 12/88 (13%)

Query: 164 LSDNYIGGYIPPTLGR------LSKLKILNLSSNFLVGNIPLTLC-----HLSKLKILNL 212
           L+D  +       +           L+ L L  N +  +   TL       +  L  L L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309

Query: 213 SSNSLVGNIPPTLGHLTQLTTLAMSNKV 240
           + N         +  + ++ +     ++
Sbjct: 310 NGNRF-SEEDDVVDEIREVFSTRGRGEL 336

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 127 SEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKIL 186
           ++ T     + L+L   ++  +I +    L     +D SDN I          L +LK L
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTL 68

Query: 187 NLSSNFLVGNIPLTLCHLSKLKILNLSSNSL 217
            +++N +          L  L  L L++NSL
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSL 99

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	242
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.82
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.82
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.81
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.81
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.79
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.77
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.77
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.69
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.64
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.62
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.61
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.6
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.58
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.57
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.52
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.49
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.48
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.47
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.46
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.28
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.16
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.07
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.04
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.0
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.94
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.8
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.74
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.58
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.35
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.22
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.88
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.57

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=6.6e-32  Score=224.10  Aligned_cols=192  Identities=28%  Similarity=0.461  Sum_probs=147.8

Q ss_pred             CCcHHHHHHHHh----------cCCCCCCCCCCCCCCCCCC--cccceEeCCCC---CeEEEEecccCCCCcee--eeCC
Q 026163           39 SPVQLEREALLI----------TGWWYDNWATSGNYTSDHC--KWTGIRCNSAG---SVIRVSLLWYENDNMKG--ELGR  101 (242)
Q Consensus        39 ~~~~~~~~~l~~----------~~~w~~~~~~~~~~~~~~C--~w~gv~c~~~~---~v~~L~l~~~~~~~~~~--~i~~  101 (242)
                      -|.++|++||++          +++|..        +.|||  .|.||+|+..+   +|++|+++++   ++.|  .+ +
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~~l~sW~~--------~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~---~l~g~~~l-p   69 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPTTLSSWLP--------TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL---NLPKPYPI-P   69 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCGGGTTCCT--------TSCTTTTCSTTEEECCSSSCCCEEEEEEECC---CCSSCEEC-C
T ss_pred             CCCHHHHHHHHHHHHHCCCCCcCCCCCC--------CCCCCCCcCCCeEEeCCCCcEEEEEEECCCC---CCCCCCCC-C
Confidence            489999999987          345543        67899  49999997443   7999999998   7776  45 7


Q ss_pred             CCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCC
Q 026163          102 FNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLS  181 (242)
Q Consensus       102 ~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  181 (242)
                      ..+.++++|++|++++++.+.|.+|+.+.++++|++|++++|++.+..+..+..+.+|+++++++|.+.+.+|..+.+++
T Consensus        70 ~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~  149 (313)
T d1ogqa_          70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP  149 (313)
T ss_dssp             GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred             hHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCc
Confidence            88999999999999976677789999999999999999999998876666666666666666666666555555555555


Q ss_pred             CCCEEEeecCCCcccccc--------------------------------------------------------------
Q 026163          182 KLKILNLSSNFLVGNIPL--------------------------------------------------------------  199 (242)
Q Consensus       182 ~L~~L~L~~N~l~~~~p~--------------------------------------------------------------  199 (242)
                      +++++++++|.+.+.+|.                                                              
T Consensus       150 ~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~  229 (313)
T d1ogqa_         150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA  229 (313)
T ss_dssp             TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred             ccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            555555555554433222                                                              


Q ss_pred             ---------ccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163          200 ---------TLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       200 ---------~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                               .++.+++|++|++++|+++|.+|+.++++++|++|+|++|+|+
T Consensus       230 ~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             SSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             cccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc
Confidence                     2344678888899999998889988999999999999999764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3e-20  Score=150.00  Aligned_cols=153  Identities=23%  Similarity=0.159  Sum_probs=101.5

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL  159 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  159 (242)
                      .+++.|+++++   .+.+.. +..|..+++|++|++++|++  ..+|. +..+++|++|++++|+++ ..+..+.++++|
T Consensus        31 ~~l~~L~Ls~N---~i~~l~-~~~f~~l~~L~~L~L~~N~l--~~l~~-~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L  102 (266)
T d1p9ag_          31 KDTTILHLSEN---LLYTFS-LATLMPYTRLTQLNLDRAEL--TKLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL  102 (266)
T ss_dssp             TTCCEEECTTS---CCSEEE-GGGGTTCTTCCEEECTTSCC--CEEEC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTC
T ss_pred             cCCCEEECcCC---cCCCcC-HHHhhccccccccccccccc--ccccc-cccccccccccccccccc-cccccccccccc
Confidence            46788888877   665433 56777888888888886655  23443 456777777777777776 344555666666


Q ss_pred             cEEEcccCcCCC------------------------CCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccC
Q 026163          160 VRLDLSDNYIGG------------------------YIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSN  215 (242)
Q Consensus       160 ~~L~Ls~N~l~~------------------------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N  215 (242)
                      ++|++++|.+..                        ..+..+..+++++.+++++|++++..+..|..+++|++|+|++|
T Consensus       103 ~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N  182 (266)
T d1p9ag_         103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN  182 (266)
T ss_dssp             CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             ccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccC
Confidence            666666555543                        33344455666777777777777655566677777777777777


Q ss_pred             CCCCCCcccccCCcCCCEEeCcCCCC
Q 026163          216 SLVGNIPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       216 ~l~~~~p~~l~~l~~L~~L~ls~N~l  241 (242)
                      +++ .+|+.+..+++|+.|+|++|++
T Consensus       183 ~L~-~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         183 SLY-TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             CCc-ccChhHCCCCCCCEEEecCCCC
Confidence            776 5666666777777777777764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.2e-19  Score=146.51  Aligned_cols=115  Identities=23%  Similarity=0.252  Sum_probs=89.0

Q ss_pred             CCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCC
Q 026163          102 FNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLS  181 (242)
Q Consensus       102 ~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  181 (242)
                      ..+..+++|++|+++++.. .+..+..+..+.++++|++++|.++...+..+..+++++++++++|++++..+..+..++
T Consensus        94 ~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~  172 (266)
T d1p9ag_          94 LLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE  172 (266)
T ss_dssp             CCTTTCTTCCEEECCSSCC-CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCT
T ss_pred             ccccccccccccccccccc-ceeeccccccccccccccccccccceeccccccccccchhcccccccccccCcccccccc
Confidence            3445555555555554333 222233455666677777777777766666678899999999999999988888899999


Q ss_pred             CCCEEEeecCCCccccccccCCCCCCcEEEcccCCCC
Q 026163          182 KLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV  218 (242)
Q Consensus       182 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  218 (242)
                      +|++|+|++|+|+ .+|..+..+++|+.|+|++|++.
T Consensus       173 ~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         173 NLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            9999999999999 78888889999999999999986

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.82  E-value=8.6e-21  Score=156.47  Aligned_cols=156  Identities=26%  Similarity=0.365  Sum_probs=111.2

Q ss_pred             CCCeEEEEecc-cCCCCceeeeCCCCcCCCCCCCEEEecCCCcc-----------------------cccCchhhhcCCC
Q 026163           79 AGSVIRVSLLW-YENDNMKGELGRFNFSCFPNLKSFKIHSNYLL-----------------------SGSIPSEITALSM  134 (242)
Q Consensus        79 ~~~v~~L~l~~-~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~-----------------------~~~~p~~~~~l~~  134 (242)
                      ..+++.|++++ +   ++.|.+ |..+.++++|++|++++|++.                       .+.+|..+.+++.
T Consensus        75 L~~L~~L~Ls~~N---~l~g~i-P~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~  150 (313)
T d1ogqa_          75 LPYLNFLYIGGIN---NLVGPI-PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN  150 (313)
T ss_dssp             CTTCSEEEEEEET---TEESCC-CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred             Ccccccccccccc---cccccc-ccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcc
Confidence            45788999986 5   788888 788999999999999865431                       1234444555555


Q ss_pred             CCEEeccCccCCCCCChhccCCcCC-cEEEcccC----------------------------------------------
Q 026163          135 LQTLELPSSRLTGIIPSEMGRLRNL-VRLDLSDN----------------------------------------------  167 (242)
Q Consensus       135 L~~L~l~~n~l~~~~p~~~~~l~~L-~~L~Ls~N----------------------------------------------  167 (242)
                      ++++++++|.+++.+|..+..+..+ +.+++++|                                              
T Consensus       151 L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~  230 (313)
T d1ogqa_         151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK  230 (313)
T ss_dssp             CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCS
T ss_pred             cceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5555555555554444433333222 22332222                                              


Q ss_pred             -cCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCC
Q 026163          168 -YIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKV  240 (242)
Q Consensus       168 -~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~  240 (242)
                       .+.+. +..+..+++|++|++++|+++|.+|..++++++|++|+|++|+++|.+|+ ++++++|+.+++++|+
T Consensus       231 ~~l~~~-~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         231 NSLAFD-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             SEECCB-GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             cccccc-ccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence             22211 22345567899999999999999999999999999999999999998885 6889999999999997

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.8e-19  Score=146.59  Aligned_cols=147  Identities=22%  Similarity=0.209  Sum_probs=127.7

Q ss_pred             CceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCC
Q 026163           94 NMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYI  173 (242)
Q Consensus        94 ~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  173 (242)
                      +....+++..+..+++|++|++++|.. ....+..+...++|+.+++++|++++..+..|..+++|++|++++|++++..
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~-~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~  169 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             cccccccchhhcccccCCEEecCCccc-ccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc
Confidence            334455577889999999999996654 3334455778899999999999999776778889999999999999999777


Q ss_pred             CcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163          174 PPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       174 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l  241 (242)
                      +..+.++++|+++++++|++++..|..|..+++|++|++++|.+.+..+..++.+++|++|++++|++
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             hhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCC
Confidence            88899999999999999999988899999999999999999999988888899999999999999976

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.9e-19  Score=143.96  Aligned_cols=159  Identities=25%  Similarity=0.237  Sum_probs=136.2

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCc------------------------ccccCchhhhcCCCC
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYL------------------------LSGSIPSEITALSML  135 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~------------------------~~~~~p~~~~~l~~L  135 (242)
                      ..++.|+++++   .+. .+++..|..+++|++|+++++++                        +....+..+.++++|
T Consensus        32 ~~~~~L~Ls~N---~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L  107 (284)
T d1ozna_          32 AASQRIFLHGN---RIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL  107 (284)
T ss_dssp             TTCSEEECTTS---CCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred             CCCCEEECcCC---cCC-CCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccC
Confidence            45788999887   765 45467899999999999986543                        111224567888999


Q ss_pred             CEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccC
Q 026163          136 QTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSN  215 (242)
Q Consensus       136 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N  215 (242)
                      ++|++++|.+....+..+....+|+.+++++|++++..+..+..+++|++|++++|++++..+..|.++++|+++++++|
T Consensus       108 ~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N  187 (284)
T d1ozna_         108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN  187 (284)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhc
Confidence            99999999998777777888999999999999999777778999999999999999999877888999999999999999


Q ss_pred             CCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163          216 SLVGNIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       216 ~l~~~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      .+++..|..+..+++|++|++++|+++
T Consensus       188 ~l~~i~~~~f~~l~~L~~L~l~~N~i~  214 (284)
T d1ozna_         188 RVAHVHPHAFRDLGRLMTLYLFANNLS  214 (284)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             cccccChhHhhhhhhcccccccccccc
Confidence            999888999999999999999999874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.79  E-value=3.9e-19  Score=136.65  Aligned_cols=113  Identities=30%  Similarity=0.318  Sum_probs=98.3

Q ss_pred             CCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEE
Q 026163          108 PNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILN  187 (242)
Q Consensus       108 ~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  187 (242)
                      +++++|++++|++.....+..|.++++|++|++++|++....+..+..+++|++|++++|+++...|..|.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            68999999976653323345688999999999999999988888999999999999999999977788899999999999


Q ss_pred             eecCCCccccccccCCCCCCcEEEcccCCCCCC
Q 026163          188 LSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGN  220 (242)
Q Consensus       188 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~  220 (242)
                      |++|+|++..|..|..+++|++|++++|.+...
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             cCCccccccCHHHhcCCcccccccccccccccc
Confidence            999999987788899999999999999998753

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=1.3e-19  Score=139.31  Aligned_cols=166  Identities=22%  Similarity=0.267  Sum_probs=131.7

Q ss_pred             CcccceEeCC----------CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEE
Q 026163           69 CKWTGIRCNS----------AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTL  138 (242)
Q Consensus        69 C~w~gv~c~~----------~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L  138 (242)
                      |.+..|.|+.          ..+++.|+++++   .+.+.++...|..+++|++|++++|++ .+..+..+..+++|++|
T Consensus         8 C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N---~i~~~~~~~~f~~l~~L~~L~L~~N~i-~~~~~~~~~~~~~L~~L   83 (192)
T d1w8aa_           8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDN---ELGRISSDGLFGRLPHLVKLELKRNQL-TGIEPNAFEGASHIQEL   83 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSC---CCCSBCCSCSGGGCTTCCEEECCSSCC-CCBCTTTTTTCTTCCEE
T ss_pred             EcCCEEEEeCCCcCccCCCCCCCCCEEEeCCC---CCcccccccccCCCceEeeeecccccc-cccccccccccccccee
Confidence            6688888852          247899999998   887777678899999999999996654 45667778999999999


Q ss_pred             eccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCC
Q 026163          139 ELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV  218 (242)
Q Consensus       139 ~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  218 (242)
                      ++++|+++...|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|.+.......+ -...++.+.+..+.++
T Consensus        84 ~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~  162 (192)
T d1w8aa_          84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAAR  162 (192)
T ss_dssp             ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCB
T ss_pred             eeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeE
Confidence            999999998888889999999999999999998888889999999999999999875332111 1123555667777777


Q ss_pred             CCCcccccCCcCCCEEeCcCCCCC
Q 026163          219 GNIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       219 ~~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      ...|.   .+..++.++++.|.++
T Consensus       163 c~~p~---~l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         163 CGAPS---KVRDVQIKDLPHSEFK  183 (192)
T ss_dssp             BCSST---TTTTSBGGGSCTTTCC
T ss_pred             eCCCh---hhcCCEeeecCHhhCc
Confidence            65664   3455677788888763

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.77  E-value=3.9e-18  Score=139.73  Aligned_cols=168  Identities=21%  Similarity=0.292  Sum_probs=118.0

Q ss_pred             CcccceEeCC----------CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEE
Q 026163           69 CKWTGIRCNS----------AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTL  138 (242)
Q Consensus        69 C~w~gv~c~~----------~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L  138 (242)
                      |.|.++.|+.          ...++.|+++++   .+.. +++..|..+++|++|+++++.+ ....|..|.++++|++|
T Consensus        10 c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N---~i~~-l~~~~f~~l~~L~~L~l~~n~~-~~i~~~~f~~l~~L~~L   84 (305)
T d1xkua_          10 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNN---KITE-IKDGDFKNLKNLHTLILINNKI-SKISPGAFAPLVKLERL   84 (305)
T ss_dssp             EETTEEECTTSCCCSCCCSCCTTCCEEECCSS---CCCC-BCTTTTTTCTTCCEEECCSSCC-CCBCTTTTTTCTTCCEE
T ss_pred             ecCCEEEecCCCCCccCCCCCCCCCEEECcCC---cCCC-cChhHhhccccccccccccccc-cccchhhhhCCCccCEe
Confidence            6789999953          256889999987   6544 4356788899999999986665 33446668888888888


Q ss_pred             eccCccCCCCC-----------------------------------------------ChhccCCcCCcEEEccc-----
Q 026163          139 ELPSSRLTGII-----------------------------------------------PSEMGRLRNLVRLDLSD-----  166 (242)
Q Consensus       139 ~l~~n~l~~~~-----------------------------------------------p~~~~~l~~L~~L~Ls~-----  166 (242)
                      ++++|+++...                                               +..+..+++|+++++++     
T Consensus        85 ~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~  164 (305)
T d1xkua_          85 YLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  164 (305)
T ss_dssp             ECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             cccCCccCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc
Confidence            88887654110                                               01122233344444444     


Q ss_pred             ----------------CcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcC
Q 026163          167 ----------------NYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQ  230 (242)
Q Consensus       167 ----------------N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  230 (242)
                                      |.+++..+..+.+++.+++|++++|.+++..+..+.++++|++|++++|+++ .+|..+.++++
T Consensus       165 l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~  243 (305)
T d1xkua_         165 IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY  243 (305)
T ss_dssp             CCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSS
T ss_pred             cCcccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccC
Confidence                            4444344555666777888888888888776777788888888888888887 56778888888


Q ss_pred             CCEEeCcCCCCC
Q 026163          231 LTTLAMSNKVAI  242 (242)
Q Consensus       231 L~~L~ls~N~lt  242 (242)
                      |++|++++|+|+
T Consensus       244 L~~L~Ls~N~i~  255 (305)
T d1xkua_         244 IQVVYLHNNNIS  255 (305)
T ss_dssp             CCEEECCSSCCC
T ss_pred             CCEEECCCCccC
Confidence            888888888874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=4.5e-17  Score=125.56  Aligned_cols=147  Identities=27%  Similarity=0.353  Sum_probs=113.9

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN  158 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  158 (242)
                      ..+++.|++.++   ++.. +  ..+..+++|++|++++|.+ + .+++ +.++++|++|++++|.+. .++ .+.++++
T Consensus        39 l~~l~~L~l~~~---~i~~-l--~~l~~l~nL~~L~Ls~N~l-~-~~~~-l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~  107 (199)
T d2omxa2          39 LDQVTTLQADRL---GIKS-I--DGVEYLNNLTQINFSNNQL-T-DITP-LKNLTKLVDILMNNNQIA-DIT-PLANLTN  107 (199)
T ss_dssp             HTTCCEEECTTS---CCCC-C--TTGGGCTTCCEEECCSSCC-C-CCGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTT
T ss_pred             hcCCCEEECCCC---CCCC-c--cccccCCCcCcCccccccc-c-Cccc-ccCCcccccccccccccc-ccc-ccccccc
Confidence            357888888887   5443 2  4577889999999996654 3 3443 888999999999999887 343 4788899


Q ss_pred             CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163          159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN  238 (242)
Q Consensus       159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~  238 (242)
                      |++|++++|.+...  ..+..+++|+.|++++|++.. ++ .+..+++|++|++.+|.+++. + .++++++|++|++++
T Consensus       108 L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~  181 (199)
T d2omxa2         108 LTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISS  181 (199)
T ss_dssp             CSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCS
T ss_pred             cccccccccccccc--cccchhhhhHHhhhhhhhhcc-cc-cccccccccccccccccccCC-c-cccCCCCCCEEECCC
Confidence            99999998888743  357788899999999998873 33 578889999999999998853 3 478889999999999


Q ss_pred             CCCC
Q 026163          239 KVAI  242 (242)
Q Consensus       239 N~lt  242 (242)
                      |+++
T Consensus       182 N~i~  185 (199)
T d2omxa2         182 NKVS  185 (199)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            9875

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=3.8e-17  Score=116.58  Aligned_cols=118  Identities=25%  Similarity=0.350  Sum_probs=95.6

Q ss_pred             CEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeec
Q 026163          111 KSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSS  190 (242)
Q Consensus       111 ~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  190 (242)
                      |+|++++|++  ..++. +.++++|++|++++|+++ .+|..++.+++|++|++++|+++. +| .+..+++|++|++++
T Consensus         1 R~L~Ls~n~l--~~l~~-l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDL--TVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCC--SSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCC--CCCcc-cccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCC
Confidence            5789997776  34554 889999999999999998 678889999999999999999984 44 589999999999999


Q ss_pred             CCCcccc-ccccCCCCCCcEEEcccCCCCCC---CcccccCCcCCCEE
Q 026163          191 NFLVGNI-PLTLCHLSKLKILNLSSNSLVGN---IPPTLGHLTQLTTL  234 (242)
Q Consensus       191 N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~---~p~~l~~l~~L~~L  234 (242)
                      |++++.. ...+..+++|++|++++|++++.   .......+|+|+.|
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            9998542 25688899999999999998742   22334457888776

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.9e-16  Score=123.05  Aligned_cols=143  Identities=26%  Similarity=0.337  Sum_probs=90.1

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN  158 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  158 (242)
                      ..+++.|+++++   .+.+ +  ..+..+++|++|++++|++  ..+| .+..+++|+.|++++|.+.. + ..+..+++
T Consensus        67 l~~L~~L~L~~n---~i~~-l--~~~~~l~~L~~L~l~~n~i--~~l~-~l~~l~~L~~L~l~~~~~~~-~-~~l~~l~~  135 (210)
T d1h6ta2          67 LPNVTKLFLNGN---KLTD-I--KPLANLKNLGWLFLDENKV--KDLS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQ  135 (210)
T ss_dssp             CTTCCEEECCSS---CCCC-C--GGGTTCTTCCEEECCSSCC--CCGG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTT
T ss_pred             CCCCCEEeCCCc---cccC-c--cccccCccccccccccccc--cccc-cccccccccccccccccccc-c-cccccccc
Confidence            345666666665   4443 2  2345666677777765544  2344 35666667777777666652 2 34566666


Q ss_pred             CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163          159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN  238 (242)
Q Consensus       159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~  238 (242)
                      ++++++++|.+++  +..+..+++|+++++++|++++ ++ .+.++++|+.|++++|++++ ++ .+.++++|++|++++
T Consensus       136 l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         136 LESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             ccccccccccccc--cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            7777777776652  2345667777778887777774 33 36777778888888887763 44 477777788877764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=6.8e-17  Score=115.23  Aligned_cols=101  Identities=28%  Similarity=0.391  Sum_probs=51.3

Q ss_pred             CEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccC
Q 026163          136 QTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSN  215 (242)
Q Consensus       136 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N  215 (242)
                      |+|++++|+++ .++ .+.++++|++|++++|+++ .+|+.+..+++|++|++++|++++ +| .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            34555555555 232 2455555555555555555 344445555555555555555552 22 3455555555555555


Q ss_pred             CCCCCCc-ccccCCcCCCEEeCcCCCC
Q 026163          216 SLVGNIP-PTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       216 ~l~~~~p-~~l~~l~~L~~L~ls~N~l  241 (242)
                      ++++... ..+..+++|++|++++|++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcC
Confidence            5543221 3345555555555555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.8e-17  Score=123.79  Aligned_cols=131  Identities=17%  Similarity=0.141  Sum_probs=106.1

Q ss_pred             CCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCC
Q 026163          102 FNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLS  181 (242)
Q Consensus       102 ~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  181 (242)
                      +.+.+..++++|++++|++  ..++..+..+++|++|++++|+++. ++ .+..+++|++|++++|+++...+..+..++
T Consensus        12 ~~~~n~~~lr~L~L~~n~I--~~i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~   87 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALP   87 (162)
T ss_dssp             CEEECTTSCEEEECTTSCC--CSCCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             HhccCcCcCcEEECCCCCC--CccCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCcccccccc
Confidence            3456777899999998776  4567767889999999999999984 43 588999999999999999955554567899


Q ss_pred             CCCEEEeecCCCcccc-ccccCCCCCCcEEEcccCCCCCCC---cccccCCcCCCEEeC
Q 026163          182 KLKILNLSSNFLVGNI-PLTLCHLSKLKILNLSSNSLVGNI---PPTLGHLTQLTTLAM  236 (242)
Q Consensus       182 ~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~---p~~l~~l~~L~~L~l  236 (242)
                      +|++|++++|+++... ...+..+++|++|++++|+++...   +..+..+|+|+.||-
T Consensus        88 ~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          88 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            9999999999998532 146788999999999999997432   235788999999974

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=7e-16  Score=119.78  Aligned_cols=146  Identities=26%  Similarity=0.336  Sum_probs=121.1

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL  159 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  159 (242)
                      ..++.|++.++   .+.. +  ..+..+++|++|++++|.+ + .++. +..+++|++|++++|++++ +| .+.++++|
T Consensus        46 ~~L~~L~l~~~---~i~~-l--~~l~~l~~L~~L~L~~n~i-~-~l~~-~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L  114 (210)
T d1h6ta2          46 NSIDQIIANNS---DIKS-V--QGIQYLPNVTKLFLNGNKL-T-DIKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKL  114 (210)
T ss_dssp             HTCCEEECTTS---CCCC-C--TTGGGCTTCCEEECCSSCC-C-CCGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTC
T ss_pred             cCccEEECcCC---CCCC-c--hhHhhCCCCCEEeCCCccc-c-Cccc-cccCccccccccccccccc-cc-cccccccc
Confidence            46888999887   5554 2  3578899999999997765 3 3553 7889999999999999984 44 58899999


Q ss_pred             cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCC
Q 026163          160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNK  239 (242)
Q Consensus       160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N  239 (242)
                      +.|++++|.+. .+ ..+..+++++.+++++|.+++  +..+..+++|+++++++|++++ ++ .+.++++|++|++++|
T Consensus       115 ~~L~l~~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N  188 (210)
T d1h6ta2         115 KSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKN  188 (210)
T ss_dssp             CEEECTTSCCC-CC-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSS
T ss_pred             ccccccccccc-cc-ccccccccccccccccccccc--cccccccccccccccccccccc-cc-cccCCCCCCEEECCCC
Confidence            99999999987 33 468889999999999999984  3357788999999999999985 44 3889999999999999


Q ss_pred             CCC
Q 026163          240 VAI  242 (242)
Q Consensus       240 ~lt  242 (242)
                      +|+
T Consensus       189 ~i~  191 (210)
T d1h6ta2         189 HIS  191 (210)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            875

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.7e-16  Score=118.43  Aligned_cols=111  Identities=25%  Similarity=0.197  Sum_probs=94.8

Q ss_pred             hhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCc
Q 026163          129 ITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLK  208 (242)
Q Consensus       129 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  208 (242)
                      +.+..++++|++++|+|+ .++..+..+++|++|++++|+++ .+ +.+..+++|++|++++|+++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-cc-CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            567788999999999999 56777788999999999999998 44 3588999999999999999965555567899999


Q ss_pred             EEEcccCCCCCCCc-ccccCCcCCCEEeCcCCCCC
Q 026163          209 ILNLSSNSLVGNIP-PTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       209 ~L~L~~N~l~~~~p-~~l~~l~~L~~L~ls~N~lt  242 (242)
                      .|++++|+++.... ..+..+++|++|++++|+++
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cceeccccccccccccccccccccchhhcCCCccc
Confidence            99999999984322 46789999999999999874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=3.7e-15  Score=116.81  Aligned_cols=146  Identities=23%  Similarity=0.330  Sum_probs=62.0

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN  158 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  158 (242)
                      ..+++.|+++++   .+.+.   ..+..++++++++++++..  ..++ .+.++++|++++++++...+..  .+...+.
T Consensus        62 l~~L~~L~ls~n---~i~~~---~~l~~l~~l~~l~~~~n~~--~~i~-~l~~l~~L~~l~l~~~~~~~~~--~~~~~~~  130 (227)
T d1h6ua2          62 LNNLIGLELKDN---QITDL---APLKNLTKITELELSGNPL--KNVS-AIAGLQSIKTLDLTSTQITDVT--PLAGLSN  130 (227)
T ss_dssp             CTTCCEEECCSS---CCCCC---GGGTTCCSCCEEECCSCCC--SCCG-GGTTCTTCCEEECTTSCCCCCG--GGTTCTT
T ss_pred             CCCCcEeecCCc---eeecc---ccccccccccccccccccc--cccc-cccccccccccccccccccccc--hhccccc
Confidence            345555555554   43331   2255555555555554433  1232 2455556666666555543211  1111112


Q ss_pred             CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163          159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN  238 (242)
Q Consensus       159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~  238 (242)
                      ++.+.++++.+..  ...+..+++|++|++++|.+++..  .+.++++|+.|++++|++++ ++ .+.++++|++|++++
T Consensus       131 ~~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~  204 (227)
T d1h6ua2         131 LQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKN  204 (227)
T ss_dssp             CCEEECCSSCCCC--CGGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTT
T ss_pred             hhhhhchhhhhch--hhhhccccccccccccccccccch--hhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcC
Confidence            2222222222110  011233444555555555444221  24445555555555555542 22 144455555555555


Q ss_pred             CCC
Q 026163          239 KVA  241 (242)
Q Consensus       239 N~l  241 (242)
                      |++
T Consensus       205 N~l  207 (227)
T d1h6ua2         205 NQI  207 (227)
T ss_dssp             SCC
T ss_pred             CcC
Confidence            544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=5.1e-15  Score=113.85  Aligned_cols=139  Identities=29%  Similarity=0.403  Sum_probs=115.8

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN  158 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  158 (242)
                      ..+++.|+++++   .+.+.   ..+..+++|++|++++|..  ..++ .+.++++|++|++++|.+...  ..+..+++
T Consensus        61 l~nL~~L~Ls~N---~l~~~---~~l~~l~~L~~L~l~~n~~--~~~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~  129 (199)
T d2omxa2          61 LNNLTQINFSNN---QLTDI---TPLKNLTKLVDILMNNNQI--ADIT-PLANLTNLTGLTLFNNQITDI--DPLKNLTN  129 (199)
T ss_dssp             CTTCCEEECCSS---CCCCC---GGGTTCTTCCEEECCSSCC--CCCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTT
T ss_pred             CCCcCcCccccc---cccCc---ccccCCccccccccccccc--cccc-ccccccccccccccccccccc--cccchhhh
Confidence            568999999998   66653   2488999999999997765  3455 488999999999999998743  45788999


Q ss_pred             CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEE
Q 026163          159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTL  234 (242)
Q Consensus       159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  234 (242)
                      |++|++++|++. .+ +.+..+++|++|++.+|++++. + .++++++|++|++++|++++ ++ .++++++|++|
T Consensus       130 L~~L~l~~n~l~-~~-~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         130 LNRLELSSNTIS-DI-SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CSEEECCSSCCC-CC-GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             hHHhhhhhhhhc-cc-ccccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            999999999997 33 3688999999999999999953 3 48899999999999999985 44 57889999876

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.62  E-value=2.2e-15  Score=123.12  Aligned_cols=137  Identities=20%  Similarity=0.255  Sum_probs=115.0

Q ss_pred             CCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCC
Q 026163          101 RFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRL  180 (242)
Q Consensus       101 ~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  180 (242)
                      ...+..+++|+++++.+++.  ..+|..  .+++|++|++++|..++..+..+.+++.+++|++++|.+++..+..+.++
T Consensus       143 ~~~~~~l~~L~~l~l~~n~l--~~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l  218 (305)
T d1xkua_         143 NGAFQGMKKLSYIRIADTNI--TTIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT  218 (305)
T ss_dssp             TTGGGGCTTCCEEECCSSCC--CSCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred             ccccccccccCccccccCCc--cccCcc--cCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccc
Confidence            44577788999999997665  345543  36789999999999998888899999999999999999998888889999


Q ss_pred             CCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcc------cccCCcCCCEEeCcCCCCC
Q 026163          181 SKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPP------TLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       181 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~------~l~~l~~L~~L~ls~N~lt  242 (242)
                      ++|++|+|++|+++ .+|..+..+++|++|++++|+|+.....      .....++|+.|++++|+++
T Consensus       219 ~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         219 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            99999999999998 5788899999999999999999853222      2345678999999999863

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=2.9e-15  Score=125.50  Aligned_cols=145  Identities=24%  Similarity=0.380  Sum_probs=100.2

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCC----------
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGII----------  149 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~----------  149 (242)
                      .+++.+++.++   .+..   .+.+..+++|+.+++++|.+ + .++ .+..+++|++|+++++++++..          
T Consensus       219 ~~L~~L~l~~n---~l~~---~~~l~~l~~L~~L~l~~n~l-~-~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~  289 (384)
T d2omza2         219 TNLDELSLNGN---QLKD---IGTLASLTNLTDLDLANNQI-S-NLA-PLSGLTKLTELKLGANQISNISPLAGLTALTN  289 (384)
T ss_dssp             TTCCEEECCSS---CCCC---CGGGGGCTTCSEEECCSSCC-C-CCG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSE
T ss_pred             CCCCEEECCCC---CCCC---cchhhcccccchhccccCcc-C-CCC-cccccccCCEeeccCcccCCCCcccccccccc
Confidence            45667777666   4433   23455666666666665543 2 222 2555666666666666555321          


Q ss_pred             ----------ChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCC
Q 026163          150 ----------PSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVG  219 (242)
Q Consensus       150 ----------p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  219 (242)
                                ...+..++++++|++++|++++. + .+..+++|++|++++|++++ ++ .+..+++|++|++++|++++
T Consensus       290 l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         290 LELNENQLEDISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISD  365 (384)
T ss_dssp             EECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCB
T ss_pred             ccccccccccccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCC
Confidence                      13356677888888888888854 3 37788899999999999884 44 58888999999999999986


Q ss_pred             CCcccccCCcCCCEEeCcCC
Q 026163          220 NIPPTLGHLTQLTTLAMSNK  239 (242)
Q Consensus       220 ~~p~~l~~l~~L~~L~ls~N  239 (242)
                      ..|  +.++++|+.|++++|
T Consensus       366 l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         366 LTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CGG--GTTCTTCSEEECCCE
T ss_pred             Chh--hccCCCCCEeeCCCC
Confidence            544  788899999999987

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=7.5e-15  Score=115.84  Aligned_cols=169  Identities=19%  Similarity=0.163  Sum_probs=113.2

Q ss_pred             CcccceEeCC----------CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEE
Q 026163           69 CKWTGIRCNS----------AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTL  138 (242)
Q Consensus        69 C~w~gv~c~~----------~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L  138 (242)
                      |....|.|..          ...+++|+++++   .+. .++...|.++++|++|++++|......-+..|..++.++++
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n---~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l   83 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLT---KLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI   83 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSCSCCSEEEEESC---CCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEE
T ss_pred             CcCCEEEEeCCCCCCcCCCCCCCCCEEECcCC---cCC-ccChhHhhccchhhhhhhccccccceeeccccccccccccc
Confidence            5566677731          236899999987   665 46467899999999999997766442223457788888888


Q ss_pred             eccC-ccCCCCCChhccCCcCCcEEEcccCcCCCCCCc-------------------------CcCCC-CCCCEEEeecC
Q 026163          139 ELPS-SRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPP-------------------------TLGRL-SKLKILNLSSN  191 (242)
Q Consensus       139 ~l~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-------------------------~~~~l-~~L~~L~L~~N  191 (242)
                      ++.. |++....+..|.++++|+++++++|.+....+.                         .+..+ ..++.+++++|
T Consensus        84 ~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n  163 (242)
T d1xwdc1          84 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN  163 (242)
T ss_dssp             EEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred             cccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccc
Confidence            8764 667766777788889999999988877632211                         11222 24566677777


Q ss_pred             CCccccccccCCCCCCcEE-EcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163          192 FLVGNIPLTLCHLSKLKIL-NLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       192 ~l~~~~p~~l~~l~~L~~L-~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      +++.. +......++++.+ ++++|.++...+..+.++++|++|++++|+|+
T Consensus       164 ~l~~i-~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         164 GIQEI-HNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             CCCEE-CTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             ccccc-ccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC
Confidence            77643 3333334454444 45667777433456778888888888888774

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=1.3e-14  Score=113.60  Aligned_cols=144  Identities=23%  Similarity=0.347  Sum_probs=114.9

Q ss_pred             CCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCc
Q 026163           78 SAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLR  157 (242)
Q Consensus        78 ~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~  157 (242)
                      ...+++.+++.++   .+. .+  ..+..+++|++++++++...  . ...+...+.++.+.++++.+...  ..+..++
T Consensus        83 ~l~~l~~l~~~~n---~~~-~i--~~l~~l~~L~~l~l~~~~~~--~-~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~  151 (227)
T d1h6ua2          83 NLTKITELELSGN---PLK-NV--SAIAGLQSIKTLDLTSTQIT--D-VTPLAGLSNLQVLYLDLNQITNI--SPLAGLT  151 (227)
T ss_dssp             TCCSCCEEECCSC---CCS-CC--GGGTTCTTCCEEECTTSCCC--C-CGGGTTCTTCCEEECCSSCCCCC--GGGGGCT
T ss_pred             ccccccccccccc---ccc-cc--cccccccccccccccccccc--c-cchhccccchhhhhchhhhhchh--hhhcccc
Confidence            3457788888776   443 23  45788999999999966542  2 23467889999999999998743  3467889


Q ss_pred             CCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCc
Q 026163          158 NLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMS  237 (242)
Q Consensus       158 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls  237 (242)
                      +|++|++++|.+++.  ..+.++++|++|++++|++++ ++ .+.++++|++|++++|++++ ++ .++++++|+.|+++
T Consensus       152 ~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         152 NLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLT  225 (227)
T ss_dssp             TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEE
T ss_pred             ccccccccccccccc--hhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCEEEee
Confidence            999999999998743  348899999999999999985 44 48899999999999999985 44 38899999999997


Q ss_pred             C
Q 026163          238 N  238 (242)
Q Consensus       238 ~  238 (242)
                      +
T Consensus       226 n  226 (227)
T d1h6ua2         226 N  226 (227)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=2e-14  Score=120.31  Aligned_cols=149  Identities=20%  Similarity=0.312  Sum_probs=117.1

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN  158 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  158 (242)
                      ..+...+++.++   .+.+..   .+...++|++|++++|.+  ..++ .+..+++|++|++++|++++..  .+..+++
T Consensus       196 l~~~~~l~l~~n---~i~~~~---~~~~~~~L~~L~l~~n~l--~~~~-~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~  264 (384)
T d2omza2         196 LTNLESLIATNN---QISDIT---PLGILTNLDELSLNGNQL--KDIG-TLASLTNLTDLDLANNQISNLA--PLSGLTK  264 (384)
T ss_dssp             CTTCSEEECCSS---CCCCCG---GGGGCTTCCEEECCSSCC--CCCG-GGGGCTTCSEEECCSSCCCCCG--GGTTCTT
T ss_pred             ccccceeeccCC---ccCCCC---cccccCCCCEEECCCCCC--CCcc-hhhcccccchhccccCccCCCC--ccccccc
Confidence            346778888877   555432   356678999999997765  2343 5889999999999999998543  3788999


Q ss_pred             CcEEEcccCcCCCCCC--------------------cCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCC
Q 026163          159 LVRLDLSDNYIGGYIP--------------------PTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV  218 (242)
Q Consensus       159 L~~L~Ls~N~l~~~~p--------------------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  218 (242)
                      |++|++++|++++..+                    ..+..++++++|++++|++++. + .+..+++|++|++++|+++
T Consensus       265 L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~  342 (384)
T d2omza2         265 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVS  342 (384)
T ss_dssp             CSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCC
T ss_pred             CCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCC
Confidence            9999999998874321                    2245567889999999999864 3 3788999999999999998


Q ss_pred             CCCcccccCCcCCCEEeCcCCCCC
Q 026163          219 GNIPPTLGHLTQLTTLAMSNKVAI  242 (242)
Q Consensus       219 ~~~p~~l~~l~~L~~L~ls~N~lt  242 (242)
                      + ++ .+.++++|++|++++|+|+
T Consensus       343 ~-l~-~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         343 D-VS-SLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             C-CG-GGGGCTTCCEEECCSSCCC
T ss_pred             C-Ch-hHcCCCCCCEEECCCCcCC
Confidence            4 44 5889999999999999875

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.4e-14  Score=104.42  Aligned_cols=109  Identities=18%  Similarity=0.126  Sum_probs=83.0

Q ss_pred             CCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCc-cCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCE
Q 026163          107 FPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSS-RLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKI  185 (242)
Q Consensus       107 l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  185 (242)
                      ....+.++.++++.  ...|..+..+++|++|++++| .++...+..|.++++|++|++++|+|+...+..|..+++|++
T Consensus         7 c~~~~~l~c~~~~~--~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           7 PHGSSGLRCTRDGA--LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CSSSSCEECCSSCC--CTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             cCCCCeEEecCCCC--ccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            34456677775555  346777788888999999766 477666677888999999999999998777777888899999


Q ss_pred             EEeecCCCccccccccCCCCCCcEEEcccCCCC
Q 026163          186 LNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV  218 (242)
Q Consensus       186 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  218 (242)
                      |+|++|+++. +|.......+|+.|++++|++.
T Consensus        85 L~Ls~N~l~~-l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          85 LNLSFNALES-LSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             EECCSSCCSC-CCSTTTCSCCCCEEECCSSCCC
T ss_pred             eeccCCCCcc-cChhhhccccccccccCCCccc
Confidence            9999999884 4444334457889999998885

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.49  E-value=9.7e-17  Score=123.67  Aligned_cols=128  Identities=23%  Similarity=0.271  Sum_probs=102.8

Q ss_pred             CCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCC
Q 026163          102 FNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLS  181 (242)
Q Consensus       102 ~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  181 (242)
                      ..+..+++|++|++++|++  ..++ .+..+++|++|++++|+++ .+|..+..+++|++|++++|+++. + +.+..++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I--~~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~  115 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNI--EKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKLV  115 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEE--SCCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHHH
T ss_pred             hHHhcccccceeECcccCC--CCcc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-ccccccc
Confidence            4577899999999997766  3455 4889999999999999998 566666667789999999999984 3 3477889


Q ss_pred             CCCEEEeecCCCccccc-cccCCCCCCcEEEcccCCCCCCCcc----------cccCCcCCCEEe
Q 026163          182 KLKILNLSSNFLVGNIP-LTLCHLSKLKILNLSSNSLVGNIPP----------TLGHLTQLTTLA  235 (242)
Q Consensus       182 ~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~----------~l~~l~~L~~L~  235 (242)
                      +|++|++++|+++.... ..+..+++|++|++++|++....+.          .+..+|+|+.||
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            99999999999985322 4688999999999999998643332          256789999987

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.48  E-value=3.6e-16  Score=120.41  Aligned_cols=127  Identities=20%  Similarity=0.253  Sum_probs=101.1

Q ss_pred             CCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEee
Q 026163          110 LKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLS  189 (242)
Q Consensus       110 L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  189 (242)
                      .+.+++.+....-..++..+..+++|++|++++|+++ .++ .+..+++|++|++++|+++ .+|.....+++|++|+++
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~  101 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWIS  101 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECS
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccc
Confidence            4445555322111346778999999999999999998 454 5889999999999999998 566555666789999999


Q ss_pred             cCCCccccccccCCCCCCcEEEcccCCCCCCCc-ccccCCcCCCEEeCcCCCC
Q 026163          190 SNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP-PTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       190 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~ls~N~l  241 (242)
                      +|+++. ++ .+..+++|++|++++|+++.... ..+..+++|+.|++++|++
T Consensus       102 ~N~i~~-l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         102 YNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             cccccc-cc-cccccccccccccccchhccccccccccCCCccceeecCCCcc
Confidence            999995 33 57788999999999999985322 4688999999999999975

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.6e-13  Score=101.32  Aligned_cols=93  Identities=24%  Similarity=0.168  Sum_probs=78.6

Q ss_pred             CCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCC
Q 026163          101 RFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRL  180 (242)
Q Consensus       101 ~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  180 (242)
                      +..+..+++|++|++.+++.++..-+..|.++++|++|++++|+++...+..|..+++|++|+|++|+++ .+|......
T Consensus        24 p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~  102 (156)
T d2ifga3          24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQG  102 (156)
T ss_dssp             TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCS
T ss_pred             cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhcc
Confidence            5677889999999998676565555567999999999999999999877888999999999999999999 555554445


Q ss_pred             CCCCEEEeecCCCc
Q 026163          181 SKLKILNLSSNFLV  194 (242)
Q Consensus       181 ~~L~~L~L~~N~l~  194 (242)
                      .+|++|+|++|.+.
T Consensus       103 ~~l~~L~L~~Np~~  116 (156)
T d2ifga3         103 LSLQELVLSGNPLH  116 (156)
T ss_dssp             CCCCEEECCSSCCC
T ss_pred             ccccccccCCCccc
Confidence            57999999999985

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.7e-13  Score=107.83  Aligned_cols=157  Identities=20%  Similarity=0.107  Sum_probs=110.1

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCC--------
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIP--------  150 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--------  150 (242)
                      ..+++.|+++++   .+...+++..|..+++++++.+..++......+..|.++++|+++++++|++....+        
T Consensus        52 l~~L~~L~ls~n---~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~  128 (242)
T d1xwdc1          52 FGDLEKIEISQN---DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ  128 (242)
T ss_dssp             CTTCCEEEEESC---TTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSS
T ss_pred             cchhhhhhhccc---cccceeeccccccccccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence            356888888887   666666666778888888888765554544555667778888888888887653211        


Q ss_pred             -----------------hhccCC-cCCcEEEcccCcCCCCCCcCcCCCCCCCEE-EeecCCCccccccccCCCCCCcEEE
Q 026163          151 -----------------SEMGRL-RNLVRLDLSDNYIGGYIPPTLGRLSKLKIL-NLSSNFLVGNIPLTLCHLSKLKILN  211 (242)
Q Consensus       151 -----------------~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L-~L~~N~l~~~~p~~l~~l~~L~~L~  211 (242)
                                       ..+.++ ..++.|++++|+++. ++.......+++++ .+.+|+++...+..|.++++|++|+
T Consensus       129 ~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~  207 (242)
T d1xwdc1         129 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD  207 (242)
T ss_dssp             CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEE
T ss_pred             ccccccccccccccccccccccccccceeeecccccccc-cccccccchhhhccccccccccccccHHHhcCCCCCCEEE
Confidence                             222223 357778888888884 44444455565555 5678889854455689999999999


Q ss_pred             cccCCCCCCCcccccCCcCCCEEeCcCC
Q 026163          212 LSSNSLVGNIPPTLGHLTQLTTLAMSNK  239 (242)
Q Consensus       212 L~~N~l~~~~p~~l~~l~~L~~L~ls~N  239 (242)
                      +++|+++...+..+.++++|+.+++.+.
T Consensus       208 Ls~N~l~~l~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         208 ISRTRIHSLPSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             CTTSCCCCCCSSSCTTCCEEESSSEESS
T ss_pred             CCCCcCCccCHHHHcCCcccccCcCCCC
Confidence            9999999555567888888888877553

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.9e-13  Score=108.72  Aligned_cols=156  Identities=19%  Similarity=0.210  Sum_probs=91.9

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccc-cCchhhhcCCCCCEEeccCcc-CCCC-CChhcc-C
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSG-SIPSEITALSMLQTLELPSSR-LTGI-IPSEMG-R  155 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~-~~p~~~~~l~~L~~L~l~~n~-l~~~-~p~~~~-~  155 (242)
                      .++++|++.++   .+.+.. ...+..+++|++|+++++..++. .+.....++++|++|+++++. +++. +...+. .
T Consensus        71 ~~L~~L~L~~~---~l~~~~-~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~  146 (284)
T d2astb2          71 SKLQNLSLEGL---RLSDPI-VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  146 (284)
T ss_dssp             CCCSEEECTTC---BCCHHH-HHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             CCccccccccc---CCCcHH-HHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccc
Confidence            35566666655   444333 34455566666666665443321 122223456666666666642 3211 111122 2


Q ss_pred             CcCCcEEEcccC--cCCCC-CCcCcCCCCCCCEEEeecC-CCccccccccCCCCCCcEEEcccC-CCCCCCcccccCCcC
Q 026163          156 LRNLVRLDLSDN--YIGGY-IPPTLGRLSKLKILNLSSN-FLVGNIPLTLCHLSKLKILNLSSN-SLVGNIPPTLGHLTQ  230 (242)
Q Consensus       156 l~~L~~L~Ls~N--~l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~  230 (242)
                      .++|+.|+++++  .++.. +.....++++|++|++++| .+++..+..+.++++|++|++++| .+++.....++++++
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~  226 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT  226 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCC
Confidence            356666666653  22211 1122345788889998875 467666777888888999999885 576666667788888


Q ss_pred             CCEEeCcCC
Q 026163          231 LTTLAMSNK  239 (242)
Q Consensus       231 L~~L~ls~N  239 (242)
                      |++|+++++
T Consensus       227 L~~L~l~~~  235 (284)
T d2astb2         227 LKTLQVFGI  235 (284)
T ss_dssp             CCEEECTTS
T ss_pred             CCEEeeeCC
Confidence            999988876

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=3.5e-12  Score=102.98  Aligned_cols=159  Identities=18%  Similarity=0.131  Sum_probs=113.1

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCc-cCCCC-CChhccCC
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSS-RLTGI-IPSEMGRL  156 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~l  156 (242)
                      ..++++|+++++   .+........+..+++|++|++.++. ++...+..+..+++|++|+++++ .+++. +......+
T Consensus        45 ~~~L~~LdLs~~---~i~~~~l~~l~~~c~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~  120 (284)
T d2astb2          45 PFRVQHMDLSNS---VIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC  120 (284)
T ss_dssp             CBCCCEEECTTC---EECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             CCCCCEEECCCC---ccCHHHHHHHHHhCCCcccccccccC-CCcHHHHHHhcCCCCcCccccccccccccccchhhHHH
Confidence            357899999876   55433213457789999999999765 44556677888999999999995 55532 22234568


Q ss_pred             cCCcEEEcccCc-CCCC-CCcCcC-CCCCCCEEEeecC--CCccc-cccccCCCCCCcEEEcccCC-CCCCCcccccCCc
Q 026163          157 RNLVRLDLSDNY-IGGY-IPPTLG-RLSKLKILNLSSN--FLVGN-IPLTLCHLSKLKILNLSSNS-LVGNIPPTLGHLT  229 (242)
Q Consensus       157 ~~L~~L~Ls~N~-l~~~-~p~~~~-~l~~L~~L~L~~N--~l~~~-~p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l~  229 (242)
                      ++|++|+++++. ++.. +...+. ..++|+.|+++++  .+++. +......+++|++|++++|. +++.....+.+++
T Consensus       121 ~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~  200 (284)
T d2astb2         121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN  200 (284)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred             HhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccC
Confidence            999999999863 4321 112222 3478999999875  34432 33334568999999999864 7777778889999


Q ss_pred             CCCEEeCcCC-CC
Q 026163          230 QLTTLAMSNK-VA  241 (242)
Q Consensus       230 ~L~~L~ls~N-~l  241 (242)
                      +|++|+++++ .+
T Consensus       201 ~L~~L~L~~C~~i  213 (284)
T d2astb2         201 YLQHLSLSRCYDI  213 (284)
T ss_dssp             TCCEEECTTCTTC
T ss_pred             cCCEEECCCCCCC
Confidence            9999999985 44

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.07  E-value=1e-09  Score=89.73  Aligned_cols=137  Identities=24%  Similarity=0.266  Sum_probs=101.7

Q ss_pred             CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163           80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL  159 (242)
Q Consensus        80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  159 (242)
                      .++++|+++++   ++. .+ |.   ..++|++|++++|++  ..+|..   +.+|+.|++++|+++ .++..   .+.|
T Consensus        38 ~~l~~LdLs~~---~L~-~l-p~---~~~~L~~L~Ls~N~l--~~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L  100 (353)
T d1jl5a_          38 RQAHELELNNL---GLS-SL-PE---LPPHLESLVASCNSL--TELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLL  100 (353)
T ss_dssp             HTCSEEECTTS---CCS-CC-CS---CCTTCSEEECCSSCC--SSCCCC---CTTCCEEECCSSCCS-CCCSC---CTTC
T ss_pred             cCCCEEEeCCC---CCC-CC-CC---CCCCCCEEECCCCCC--cccccc---hhhhhhhhhhhcccc-hhhhh---cccc
Confidence            36789999988   665 35 32   357899999997766  367754   468999999999988 44432   2469


Q ss_pred             cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCC
Q 026163          160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNK  239 (242)
Q Consensus       160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N  239 (242)
                      ++|++++|.+. .+|. +..+++|++|++++|.+.. .+.   ....+..+.+..+...  .+..+..++.++.+++++|
T Consensus       101 ~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~-~~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n  172 (353)
T d1jl5a_         101 EYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNN  172 (353)
T ss_dssp             CEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSS
T ss_pred             ccccccccccc-cccc-hhhhccceeeccccccccc-ccc---ccccccchhhcccccc--ccccccccccceecccccc
Confidence            99999999998 5664 6789999999999999874 332   2356777887776654  3445677888888888887


Q ss_pred             CC
Q 026163          240 VA  241 (242)
Q Consensus       240 ~l  241 (242)
                      .+
T Consensus       173 ~~  174 (353)
T d1jl5a_         173 SL  174 (353)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.04  E-value=3.1e-09  Score=86.75  Aligned_cols=78  Identities=18%  Similarity=0.250  Sum_probs=58.9

Q ss_pred             CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163           79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN  158 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  158 (242)
                      ..+++.|+++++   ++. .+ +.   .+.+|+.|++.+|+.  ..++. +  .+.|++|++++|.+. .+|. ++.+++
T Consensus        57 ~~~L~~L~Ls~N---~l~-~l-p~---~~~~L~~L~l~~n~l--~~l~~-l--p~~L~~L~L~~n~l~-~lp~-~~~l~~  121 (353)
T d1jl5a_          57 PPHLESLVASCN---SLT-EL-PE---LPQSLKSLLVDNNNL--KALSD-L--PPLLEYLGVSNNQLE-KLPE-LQNSSF  121 (353)
T ss_dssp             CTTCSEEECCSS---CCS-SC-CC---CCTTCCEEECCSSCC--SCCCS-C--CTTCCEEECCSSCCS-SCCC-CTTCTT
T ss_pred             CCCCCEEECCCC---CCc-cc-cc---chhhhhhhhhhhccc--chhhh-h--ccccccccccccccc-cccc-hhhhcc
Confidence            467999999987   665 45 33   256899999997765  23442 1  246999999999998 5664 578999


Q ss_pred             CcEEEcccCcCCC
Q 026163          159 LVRLDLSDNYIGG  171 (242)
Q Consensus       159 L~~L~Ls~N~l~~  171 (242)
                      |++|++++|.+..
T Consensus       122 L~~L~l~~~~~~~  134 (353)
T d1jl5a_         122 LKIIDVDNNSLKK  134 (353)
T ss_dssp             CCEEECCSSCCSC
T ss_pred             ceeeccccccccc
Confidence            9999999998763

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.00  E-value=1.9e-11  Score=101.00  Aligned_cols=135  Identities=19%  Similarity=0.237  Sum_probs=74.3

Q ss_pred             CCCCCEEEecCCCcccc---cCchhhhcCCCCCEEeccCccCCCC-----CChhccCCcCCcEEEcccCcCCCC----CC
Q 026163          107 FPNLKSFKIHSNYLLSG---SIPSEITALSMLQTLELPSSRLTGI-----IPSEMGRLRNLVRLDLSDNYIGGY----IP  174 (242)
Q Consensus       107 l~~L~~L~l~~~~~~~~---~~p~~~~~l~~L~~L~l~~n~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~----~p  174 (242)
                      .+.|+.++++++++...   .+...+...+.|++|++++|+++..     +...+..+++|++|++++|.++..    +.
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            34455555554333211   1122244566677777777766531     122345566777777777766422    22


Q ss_pred             cCcCCCCCCCEEEeecCCCcccccc----ccC--CCCCCcEEEcccCCCCCC----Cccccc-CCcCCCEEeCcCCCC
Q 026163          175 PTLGRLSKLKILNLSSNFLVGNIPL----TLC--HLSKLKILNLSSNSLVGN----IPPTLG-HLTQLTTLAMSNKVA  241 (242)
Q Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~p~----~l~--~l~~L~~L~L~~N~l~~~----~p~~l~-~l~~L~~L~ls~N~l  241 (242)
                      ..+..+++|++|++++|.+++....    .+.  ..+.|++|++++|.++..    +...+. +.++|++|++++|+|
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            3455667777777777777643222    222  235677777777776542    223332 456777777777766

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.94  E-value=1e-10  Score=96.54  Aligned_cols=160  Identities=18%  Similarity=0.127  Sum_probs=114.3

Q ss_pred             CCCeEEEEecccCCCCceee----eCCCCcCCCCCCCEEEecCCCcccc---c----C-----chhhhcCCCCCEEeccC
Q 026163           79 AGSVIRVSLLWYENDNMKGE----LGRFNFSCFPNLKSFKIHSNYLLSG---S----I-----PSEITALSMLQTLELPS  142 (242)
Q Consensus        79 ~~~v~~L~l~~~~~~~~~~~----i~~~~~~~l~~L~~L~l~~~~~~~~---~----~-----p~~~~~l~~L~~L~l~~  142 (242)
                      ..+++.|++.++   .+...    + ...+...++|++|++++|.+...   .    +     .......+.|+.+++++
T Consensus        92 ~~~L~~L~L~~n---~i~~~~~~~l-~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~  167 (344)
T d2ca6a1          92 CPKLHTVRLSDN---AFGPTAQEPL-IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR  167 (344)
T ss_dssp             CTTCCEEECCSC---CCCTTTHHHH-HHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred             CCCccccccccc---ccccccccch-hhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccc
Confidence            357899999887   44321    2 23456788999999997764211   0    1     11124577899999999


Q ss_pred             ccCCCC----CChhccCCcCCcEEEcccCcCCCC-----CCcCcCCCCCCCEEEeecCCCccc----cccccCCCCCCcE
Q 026163          143 SRLTGI----IPSEMGRLRNLVRLDLSDNYIGGY-----IPPTLGRLSKLKILNLSSNFLVGN----IPLTLCHLSKLKI  209 (242)
Q Consensus       143 n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~  209 (242)
                      |.++..    +...+...++|++|++++|+++..     +...+..+++|++|++++|.++..    +...+..+++|++
T Consensus       168 n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~  247 (344)
T d2ca6a1         168 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE  247 (344)
T ss_dssp             SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred             ccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchh
Confidence            988743    223345678999999999998732     334577889999999999998643    3456778899999


Q ss_pred             EEcccCCCCCCCc----ccccC--CcCCCEEeCcCCCCC
Q 026163          210 LNLSSNSLVGNIP----PTLGH--LTQLTTLAMSNKVAI  242 (242)
Q Consensus       210 L~L~~N~l~~~~p----~~l~~--l~~L~~L~ls~N~lt  242 (242)
                      |++++|.+++...    +.+..  .+.|++|++++|+|+
T Consensus       248 L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             hhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            9999999986433    33333  467999999999874

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=5.6e-11  Score=87.86  Aligned_cols=65  Identities=28%  Similarity=0.196  Sum_probs=30.2

Q ss_pred             hcCCCCCEEeccCccCCCCC--ChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCc
Q 026163          130 TALSMLQTLELPSSRLTGII--PSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLV  194 (242)
Q Consensus       130 ~~l~~L~~L~l~~n~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  194 (242)
                      ..+++|++|++++|+++..-  +..+..+++|++|++++|.|+...+-...+..+|+.|++++|.+.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            44556666666666655321  223344555555555555555221111112234455555555544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=9.7e-11  Score=99.10  Aligned_cols=112  Identities=27%  Similarity=0.300  Sum_probs=84.4

Q ss_pred             CCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCC----CCChhccCCcCCcEEEcccCcCCCC----CCcCcC-
Q 026163          108 PNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTG----IIPSEMGRLRNLVRLDLSDNYIGGY----IPPTLG-  178 (242)
Q Consensus       108 ~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~-  178 (242)
                      ++|++||++++++....+.+.+..++++++|+|++|+++.    .++..+..+++|++|++++|+++..    +.+.+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            3689999997776443445557778999999999999873    2344567889999999999988521    222332 


Q ss_pred             CCCCCCEEEeecCCCccc----cccccCCCCCCcEEEcccCCCCC
Q 026163          179 RLSKLKILNLSSNFLVGN----IPLTLCHLSKLKILNLSSNSLVG  219 (242)
Q Consensus       179 ~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~  219 (242)
                      ...+|++|++++|++++.    ++..+..+++|++|++++|.++.
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            235799999999999753    45567888999999999999874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=6e-10  Score=94.08  Aligned_cols=158  Identities=19%  Similarity=0.194  Sum_probs=102.9

Q ss_pred             CeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCccc---ccCchhhhcCCCCCEEeccCccCCCC----CChhc
Q 026163           81 SVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLS---GSIPSEITALSMLQTLELPSSRLTGI----IPSEM  153 (242)
Q Consensus        81 ~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~---~~~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~  153 (242)
                      +++.|+++++   ++.+.--...+..++++++|+|++|.+..   ..+...+..+++|++|++++|.++..    +...+
T Consensus         3 ~l~~ld~~~~---~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           3 DIQSLDIQCE---ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEESC---CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCEEEeeCC---cCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            5889999988   66543113345678999999999776532   13345577899999999999998632    12222


Q ss_pred             c-CCcCCcEEEcccCcCCCC----CCcCcCCCCCCCEEEeecCCCcccccc----cc-CCCCCCcEEEcccCCCCCCC--
Q 026163          154 G-RLRNLVRLDLSDNYIGGY----IPPTLGRLSKLKILNLSSNFLVGNIPL----TL-CHLSKLKILNLSSNSLVGNI--  221 (242)
Q Consensus       154 ~-~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~----~l-~~l~~L~~L~L~~N~l~~~~--  221 (242)
                      . ...+|++|++++|+++..    ++..+..+++|++|++++|.+......    .+ ...............+....  
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  159 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  159 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhc
Confidence            2 235799999999999743    345678899999999999998753221    11 12233445555444443211  


Q ss_pred             --cccccCCcCCCEEeCcCCCC
Q 026163          222 --PPTLGHLTQLTTLAMSNKVA  241 (242)
Q Consensus       222 --p~~l~~l~~L~~L~ls~N~l  241 (242)
                        ...+...+.++.++++++.+
T Consensus       160 ~~~~~l~~~~~~~~~~ls~~~~  181 (460)
T d1z7xw1         160 PLASVLRAKPDFKELTVSNNDI  181 (460)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBC
T ss_pred             cccccccccccccccccccccc
Confidence              12234556778888776643

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=7.9e-10  Score=81.49  Aligned_cols=106  Identities=26%  Similarity=0.223  Sum_probs=72.2

Q ss_pred             hhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCC--CcCcCCCCCCCEEEeecCCCccccccccCCCCC
Q 026163          129 ITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYI--PPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSK  206 (242)
Q Consensus       129 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  206 (242)
                      +..+..+..++..++... .++.....+++|++|++++|+++...  +..+..+++|+.|++++|.++...+-......+
T Consensus        38 l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~  116 (162)
T d1koha1          38 LVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK  116 (162)
T ss_dssp             TTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCC
T ss_pred             hhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccc
Confidence            333444444444444333 34444567889999999999998532  344667899999999999998543323334457


Q ss_pred             CcEEEcccCCCCCCCcc-------cccCCcCCCEEe
Q 026163          207 LKILNLSSNSLVGNIPP-------TLGHLTQLTTLA  235 (242)
Q Consensus       207 L~~L~L~~N~l~~~~p~-------~l~~l~~L~~L~  235 (242)
                      |+.|++++|++.+....       .+..+|+|+.||
T Consensus       117 L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         117 LEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             CSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             cceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            99999999999865432       356789999886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.35  E-value=8.2e-08  Score=70.68  Aligned_cols=87  Identities=9%  Similarity=0.079  Sum_probs=40.8

Q ss_pred             CCCCCCEEEecCCCccccc----CchhhhcCCCCCEEeccCccCCCC----CChhccCCcCCcEEEcccCcCCCC----C
Q 026163          106 CFPNLKSFKIHSNYLLSGS----IPSEITALSMLQTLELPSSRLTGI----IPSEMGRLRNLVRLDLSDNYIGGY----I  173 (242)
Q Consensus       106 ~l~~L~~L~l~~~~~~~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~  173 (242)
                      +.++|++|++++++.++..    +-..+...+.|++|++++|.+...    +...+...+.|++|++++|.++..    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3456677777643322211    112234455666666666666522    112233345566666666655421    1


Q ss_pred             CcCcCCCCCCCEEEeecCC
Q 026163          174 PPTLGRLSKLKILNLSSNF  192 (242)
Q Consensus       174 p~~~~~l~~L~~L~L~~N~  192 (242)
                      -..+...++|++|++++|.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHhCCcCCEEECCCCc
Confidence            1223344455555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.22  E-value=2.6e-07  Score=67.89  Aligned_cols=111  Identities=12%  Similarity=0.141  Sum_probs=77.0

Q ss_pred             hcCCCCCEEeccCc-cCCCC----CChhccCCcCCcEEEcccCcCCCC----CCcCcCCCCCCCEEEeecCCCccc----
Q 026163          130 TALSMLQTLELPSS-RLTGI----IPSEMGRLRNLVRLDLSDNYIGGY----IPPTLGRLSKLKILNLSSNFLVGN----  196 (242)
Q Consensus       130 ~~l~~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----  196 (242)
                      .+.+.|++|+|+++ .++..    +-..+...++|++|++++|.++..    +.+.+...+.|++|++++|.+.+.    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            45688999999874 45522    223456678899999999988632    223344567899999999988753    


Q ss_pred             cccccCCCCCCcEEEcccCCCCCC-------CcccccCCcCCCEEeCcCCC
Q 026163          197 IPLTLCHLSKLKILNLSSNSLVGN-------IPPTLGHLTQLTTLAMSNKV  240 (242)
Q Consensus       197 ~p~~l~~l~~L~~L~L~~N~l~~~-------~p~~l~~l~~L~~L~ls~N~  240 (242)
                      +-..+...+.|++|++++|.+...       +...+...+.|+.|+++.+.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            334567778899999988876532       34455667888999887763

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.88  E-value=6.6e-07  Score=65.47  Aligned_cols=65  Identities=11%  Similarity=0.225  Sum_probs=30.6

Q ss_pred             CCCCCCEEEecCCCcccc-c---CchhhhcCCCCCEEeccCccCCCCC----ChhccCCcCCcEEEcccCcCC
Q 026163          106 CFPNLKSFKIHSNYLLSG-S---IPSEITALSMLQTLELPSSRLTGII----PSEMGRLRNLVRLDLSDNYIG  170 (242)
Q Consensus       106 ~l~~L~~L~l~~~~~~~~-~---~p~~~~~l~~L~~L~l~~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~  170 (242)
                      +.+.|++|++++.+.++. .   +-..+...++|++|++++|.++...    ...+...++++.+++++|.++
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            445666666664332211 1   1122334556666666666554321    112233455555555555554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.57  E-value=6.1e-06  Score=60.08  Aligned_cols=112  Identities=18%  Similarity=0.161  Sum_probs=77.2

Q ss_pred             hhcCCCCCEEeccC-ccCCCC----CChhccCCcCCcEEEcccCcCCCCC----CcCcCCCCCCCEEEeecCCCccc---
Q 026163          129 ITALSMLQTLELPS-SRLTGI----IPSEMGRLRNLVRLDLSDNYIGGYI----PPTLGRLSKLKILNLSSNFLVGN---  196 (242)
Q Consensus       129 ~~~l~~L~~L~l~~-n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~---  196 (242)
                      ..+.+.|++|++++ +.++..    +-..+...++|++|++++|.++...    ...+...++++.+++++|.+...   
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            45678899999987 456522    2233457788999999999886432    22345668899999999988653   


Q ss_pred             -cccccCCCCCCcEEEc--ccCCCCC----CCcccccCCcCCCEEeCcCCC
Q 026163          197 -IPLTLCHLSKLKILNL--SSNSLVG----NIPPTLGHLTQLTTLAMSNKV  240 (242)
Q Consensus       197 -~p~~l~~l~~L~~L~L--~~N~l~~----~~p~~l~~l~~L~~L~ls~N~  240 (242)
                       +...+...++|+.++|  ++|.+..    .+.+.+...+.|++|+++.+.
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence             3345667788887655  4566654    244556678889999988764