Citrus Sinensis ID: 026164

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240--
Protein Sequence
MAATFPQMPLASPIISRHGDNQINQHHPLFAATSWRASKLCLCCSRRSSQRVVALVGKGDTDLRVAQENDLQDQDQEDEEEEEEATPEDLENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEMVQWPNLEVEATKQKPSKSLYAKVTDTGIDPEMAAKRLNIDWDSAAEIEDAGGGDDPEVPSALVCFLLSLSL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccHHccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccHHHHHHHHHcccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHccccccccccccccccccHHHHHHHHcccccHHHHccccccccccccccHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccEEccccccccEEEEccccccccccccEEccccccccEEEEEEcccccEEEEEEccccccccccccccHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccHHHHHHHHHccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccEEcccccccccHHHEcccccccHHHHHHHHccccccHHcccccccccccccccHEEEEHHHccc
Coil and Loop (DISEMBL)
maatfpqmplaspiisrhgdnqinqhhplfaaTSWRASKLCLCCSRRSSQRVVALVGkgdtdlrvaqendlqdqdqedeeeeeeatpedLENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLlgiedsnaptrDDLAEALEQVNEGKVPKNRVALRMLAEEMVQwpnleveatkqkpskslYAKVtdtgidpeMAAKRLNIdwdsaaeiedagggddpevpSALVCFLLSLSL
Flexible Loop (DISEMBL)
maatfpqmpLASPIISRHGDNQINQHHPLFAATSWRASKLCLCCSRRSSQRVVALVGkgdtdlrvaqendlqdqdqedeeeeeeatpedleniaQVKRVLELLRKnrdmlfsevkltimiedprevERRRLlgiedsnaptrdDLAEAleqvnegkvpkNRVALRMLAEEMVQWPNleveatkqkpskslyAKVTDTGIDPEMAAKRLNIDWDSAAEIEDAGGGDDPEVPSALVCFLLSLSL
Low Complexity Region (SEG)
MAATFPQMPLASPIISRHGDNQINQHHPLFAATSWRASKlclccsrrssQRVVALVGKGDTDLRVaqendlqdqdqedeeeeeeatpedlenIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEMVQWPNLEVEATKQKPSKSLYAKVTDTGIDPEMAAKRLNIDWDSAAEIEDAGGGDDPEVPSALVCFLLSLSL
Disordered region (IsUnstruct)
**********************INQHHPLFAATSWRASKLCLCCSRRSSQRVVALVGK**********************************IAQVKRVLELLRKNRDMLFSEVKLTIMIED***************************************VALRMLAEEMVQWPN******************************************************************
Disordered Region (DISOPRED)
***TFPQMPLA*****************LFAATSWRASKLCLCC**********************************************ENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRR*********PTRDDLAEALEQVNEGKVPKNRVALRMLAEEMVQWPN*******************DTGIDPEMAAKRLNIDWD******************ALVCFLLSLSL
Disordered Region (DISEMBL)
MAATFPQMPLASPIISRHGDNQINQHHPLFAATSWRASKLCLCCSRRSSQRVVALVGKGDTDLRVAQE********************DLENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEMVQWPNLEVEATKQKPSKSLYAKVTDTGIDPEMAAKRLNIDWDSAAEIEDAGGGDDPEVPSALVCFLLSLSL
Disordered Region (DISPRO)
*AATFPQMPLASPIISRHGDNQINQHHPLFAATSWRASKLCLCCSRRSSQRVVALVGKGDTDL*********************ATPEDLENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEMVQWPNLEVEATKQKPSKSLYAKVTDTGIDPEMAAKRLNIDWDSAAEI********PEVPSALVCFLLSLSL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAATFPQMPLASPIISRHGDNQINQHHPLFAATSWRASKLCLCCSRRSSQRVVALVGKGDTDLxxxxxxxxxxxxxxxxxxxxxATPEDLENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEMVQWPNLEVEATKQKPSKSLYAKVTDTGIDPEMAAKRLNIDWDSAAEIEDAGGGDDPEVPSALVCFLLSLSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
225459888	259	PREDICTED: uncharacterized protein LOC10	0.698	0.652	0.685	1e-62
297734719	254	unnamed protein product [Vitis vinifera]	0.727	0.692	0.670	2e-62
147844656	259	hypothetical protein VITISV_019177 [Viti	0.723	0.675	0.668	7e-62
449433453	254	PREDICTED: uncharacterized protein LOC10	0.913	0.870	0.576	7e-61
359806797	261	uncharacterized protein LOC100816881 [Gl	0.764	0.708	0.664	2e-60
255586744	269	conserved hypothetical protein [Ricinus	0.958	0.862	0.574	1e-59
356526691	257	PREDICTED: uncharacterized protein LOC10	0.834	0.785	0.625	2e-59
356526693	258	PREDICTED: uncharacterized protein LOC10	0.830	0.779	0.613	2e-58
255646421	233	unknown [Glycine max]	0.793	0.824	0.636	4e-57
224053647	215	predicted protein [Populus trichocarpa]	0.623	0.702	0.728	8e-57

>gi|225459888|ref|XP_002262923.1| PREDICTED: uncharacterized protein LOC100267182 [Vitis vinifera]

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 124/181 (68%), Positives = 148/181 (81%), Gaps = 12/181 (6%)

Query: 53  VALVGKGDTDLRVAQENDLQDQDQEDEEEEEEATPEDLENIAQVKRVLELLRKNRDMLFS 112
           +  VGK +T+LRV+ +            ++E+ +PEDLE ++Q++RVLELLRKNRDM+FS
Sbjct: 62  LVFVGKEETELRVSSD------------QQEDPSPEDLEYVSQIQRVLELLRKNRDMIFS 109

Query: 113 EVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEMV 172
           EVKLTIMIED REVERRRLLGIED +APTR+DL EALE+VNEGKVP+NR+ALRMLAEEM 
Sbjct: 110 EVKLTIMIEDQREVERRRLLGIEDPDAPTREDLVEALEEVNEGKVPENRIALRMLAEEMT 169

Query: 173 QWPNLEVEATKQKPSKSLYAKVTDTGIDPEMAAKRLNIDWDSAAEIEDAGGGDDPEVPSA 232
           QWPNLEVEA K+K SKSLYAK TDTG+DP  AAKRLN+DWDSAAEIED    D+ EVP A
Sbjct: 170 QWPNLEVEAPKKKVSKSLYAKATDTGVDPREAAKRLNMDWDSAAEIEDPDVSDETEVPPA 229

Query: 233 L 233
           +
Sbjct: 230 V 230

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734719|emb|CBI16953.3| unnamed protein product [Vitis vinifera]

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 126/188 (67%), Positives = 150/188 (79%), Gaps = 12/188 (6%)

Query: 53  VALVGKGDTDLRVAQENDLQDQDQEDEEEEEEATPEDLENIAQVKRVLELLRKNRDMLFS 112
           +  VGK +T+LRV+ +            ++E+ +PEDLE ++Q++RVLELLRKNRDM+FS
Sbjct: 57  LVFVGKEETELRVSSD------------QQEDPSPEDLEYVSQIQRVLELLRKNRDMIFS 104

Query: 113 EVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEMV 172
           EVKLTIMIED REVERRRLLGIED +APTR+DL EALE+VNEGKVP+NR+ALRMLAEEM 
Sbjct: 105 EVKLTIMIEDQREVERRRLLGIEDPDAPTREDLVEALEEVNEGKVPENRIALRMLAEEMT 164

Query: 173 QWPNLEVEATKQKPSKSLYAKVTDTGIDPEMAAKRLNIDWDSAAEIEDAGGGDDPEVPSA 232
           QWPNLEVEA K+K SKSLYAK TDTG+DP  AAKRLN+DWDSAAEIED    D+ EVP A
Sbjct: 165 QWPNLEVEAPKKKVSKSLYAKATDTGVDPREAAKRLNMDWDSAAEIEDPDVSDETEVPPA 224

Query: 233 LVCFLLSL 240
           +    L L
Sbjct: 225 VGYGALYL 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147844656|emb|CAN82138.1| hypothetical protein VITISV_019177 [Vitis vinifera]

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 125/187 (66%), Positives = 148/187 (79%), Gaps = 12/187 (6%)

Query: 54  ALVGKGDTDLRVAQENDLQDQDQEDEEEEEEATPEDLENIAQVKRVLELLRKNRDMLFSE 113
             VGK +T+LRV+ +            ++E+ +PEDLE ++Q++RVLELLRKNRDM+FSE
Sbjct: 63  VFVGKEETELRVSSD------------QQEDPSPEDLEYVSQIQRVLELLRKNRDMIFSE 110

Query: 114 VKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEMVQ 173
           VKLTIMIED REVERRRLLGIED +APTR+DL EALE+VNEGKVP+NR+ALRMLAEEM Q
Sbjct: 111 VKLTIMIEDQREVERRRLLGIEDPDAPTREDLVEALEEVNEGKVPENRIALRMLAEEMTQ 170

Query: 174 WPNLEVEATKQKPSKSLYAKVTDTGIDPEMAAKRLNIDWDSAAEIEDAGGGDDPEVPSAL 233
           WPN EVEA K+K SKSLYAK TDTG+DP  AAKRLN+DWDSAAEIED    D+ EVP A+
Sbjct: 171 WPNXEVEAPKKKVSKSLYAKATDTGVDPREAAKRLNMDWDSAAEIEDPDVSDETEVPPAV 230

Query: 234 VCFLLSL 240
               L L
Sbjct: 231 GYGALYL 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433453|ref|XP_004134512.1| PREDICTED: uncharacterized protein LOC101220256 [Cucumis sativus] gi|449515591|ref|XP_004164832.1| PREDICTED: uncharacterized protein LOC101223339 [Cucumis sativus]

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 135/234 (57%), Positives = 163/234 (69%), Gaps = 13/234 (5%)

Query: 1   MAATFPQMPLA-SPIISRHGDNQINQHHPLFAATSWRASKLCLCCSRRSSQRVVALVGKG 59
           MA      PL+ SP  S   +  I++        S   ++  L      ++R +A VGK 
Sbjct: 4   MALQLRHFPLSTSPSSSIEHNYDISRRFRYLPLPS-HGTRPHLPVPSSRNRRSLACVGKE 62

Query: 60  DTDLRVAQENDLQDQDQEDEEEEEEATPEDLENIAQVKRVLELLRKNRDMLFSEVKLTIM 119
           DT LR         Q     +E+ EA  +DLE I Q++RVLELL+KNRDMLF+EVKLT+M
Sbjct: 63  DTQLR---------QPSSTTDEQPEA--QDLEYIRQIQRVLELLKKNRDMLFNEVKLTVM 111

Query: 120 IEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEMVQWPNLEV 179
           IEDPREVERRRLLGI++ +APTRDDLA  LE+VNEGK PKNRVAL+MLAEEM  WPNLE 
Sbjct: 112 IEDPREVERRRLLGIDEDDAPTRDDLAATLEEVNEGKFPKNRVALQMLAEEMTNWPNLEA 171

Query: 180 EATKQKPSKSLYAKVTDTGIDPEMAAKRLNIDWDSAAEIEDAGGGDDPEVPSAL 233
           EA K+K SKSLYAK TDTG++P  AAKRLNIDWD+AAEIEDA   DDPEVP+A+
Sbjct: 172 EAPKKKRSKSLYAKATDTGVNPREAAKRLNIDWDTAAEIEDADLSDDPEVPAAV 225

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806797|ref|NP_001241562.1| uncharacterized protein LOC100816881 [Glycine max] gi|255636679|gb|ACU18676.1| unknown [Glycine max]

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 127/191 (66%), Positives = 156/191 (81%), Gaps = 6/191 (3%)

Query: 46  RRSSQRV--VALVGKGDTDLRVAQENDLQDQD-QEDEEEEEEATPEDLENIAQVKRVLEL 102
           RR+S  +  V  VGK DTDLRV+    LQ+Q   ED++ ++E TP+D+E +AQ+KRVLEL
Sbjct: 45  RRNSNTLSHVPSVGKEDTDLRVSS---LQEQQLGEDDDGDDEPTPQDIEYVAQIKRVLEL 101

Query: 103 LRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNEGKVPKNRV 162
           LRKNRDMLF EVKLTIMIEDPREVERRRLLGIED + PTR+DL +AL+++NEGK+PK+R 
Sbjct: 102 LRKNRDMLFGEVKLTIMIEDPREVERRRLLGIEDLDGPTREDLVDALDEINEGKIPKDRA 161

Query: 163 ALRMLAEEMVQWPNLEVEATKQKPSKSLYAKVTDTGIDPEMAAKRLNIDWDSAAEIEDAG 222
           +L+MLAEE+  WPNLE    K+KPSKSLYAK TDTGIDPE+AAK+LNIDWDSAAEIE+  
Sbjct: 162 SLQMLAEELASWPNLEDAVPKKKPSKSLYAKATDTGIDPELAAKKLNIDWDSAAEIEETN 221

Query: 223 GGDDPEVPSAL 233
             D+ EVPS +
Sbjct: 222 ADDETEVPSVV 232

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586744|ref|XP_002533992.1| conserved hypothetical protein [Ricinus communis] gi|223526012|gb|EEF28389.1| conserved hypothetical protein [Ricinus communis]

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 143/249 (57%), Positives = 178/249 (71%), Gaps = 17/249 (6%)

Query: 1   MAATFPQMPLASPIISRHGDNQINQHHPLF----------AATSWRASKLCLC-----CS 45
           MA    Q+P+ASP+      +     H LF          + +  R +  CL       S
Sbjct: 1   MALQIYQLPVASPLSVSSSSSSSLHTHFLFLYHNHQQQFQSCSRIRLASFCLHQNTSNVS 60

Query: 46  RRSSQRVVALVGKGDTDLRVAQENDLQDQDQEDEEEEEEA-TPEDLENIAQVKRVLELLR 104
            R+ +  + LVGK D ++RV  E + +++D+ED+EEE    +P+DL+ I ++K+VL+LL+
Sbjct: 61  WRNRKNGL-LVGKEDLEMRVQDEENEEEEDEEDDEEEAPPPSPQDLQYIQEIKKVLDLLK 119

Query: 105 KNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVAL 164
           +NRDMLF+EVKLTIMIEDPREVERRRLLGIED +APTR+DLAEALEQVNEGKVPKNRVAL
Sbjct: 120 RNRDMLFNEVKLTIMIEDPREVERRRLLGIEDLDAPTREDLAEALEQVNEGKVPKNRVAL 179

Query: 165 RMLAEEMVQWPNLEVEATKQKPSKSLYAKVTDTGIDPEMAAKRLNIDWDSAAEIEDAGGG 224
           ++LAEEM+ WPNLEVEATK  P KSLYAK TDTGIDP  AAKRL IDWDSAAEIED    
Sbjct: 180 QILAEEMMNWPNLEVEATKTAPKKSLYAKATDTGIDPREAAKRLKIDWDSAAEIEDVDSS 239

Query: 225 DDPEVPSAL 233
           D+ EVP A+
Sbjct: 240 DETEVPPAV 248

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526691|ref|XP_003531950.1| PREDICTED: uncharacterized protein LOC100779639 isoform 1 [Glycine max]

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 130/208 (62%), Positives = 158/208 (75%), Gaps = 6/208 (2%)

Query: 25  QHHPLFAATSWRASKLCLCCSRRSSQRV--VALVGKGDTDLRVAQENDLQDQDQEDEEEE 82
            HHP    T    ++L     RR+S  +  V  VGK DTDLRV+   + Q  D  D++ +
Sbjct: 22  HHHPSVFCTGVAFTRLR---HRRTSNTIFLVPSVGKEDTDLRVSSLQE-QQLDDGDDDND 77

Query: 83  EEATPEDLENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTR 142
           EE TP+DLE +AQ+KRVLELLRKNRDM+F EVKLTIMIED REVERRRLLGIED + PTR
Sbjct: 78  EEPTPQDLEYVAQIKRVLELLRKNRDMIFGEVKLTIMIEDAREVERRRLLGIEDLDGPTR 137

Query: 143 DDLAEALEQVNEGKVPKNRVALRMLAEEMVQWPNLEVEATKQKPSKSLYAKVTDTGIDPE 202
           +DL +AL+++NEGK+PK+R AL+MLAEE+  WPNLE    K+KPSKSLYAK TDTGIDPE
Sbjct: 138 EDLVDALDEINEGKIPKDRAALQMLAEELASWPNLEDALPKKKPSKSLYAKATDTGIDPE 197

Query: 203 MAAKRLNIDWDSAAEIEDAGGGDDPEVP 230
           +AAK+LNIDWDSAAEIE+    D+ EVP
Sbjct: 198 LAAKKLNIDWDSAAEIEEQNADDETEVP 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526693|ref|XP_003531951.1| PREDICTED: uncharacterized protein LOC100779639 isoform 2 [Glycine max]

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 127/207 (61%), Positives = 157/207 (75%), Gaps = 6/207 (2%)

Query: 25  QHHPLFAATSWRASKLCLCCSRRSSQRVVAL--VGKGDTDLRVAQENDLQDQDQEDEEEE 82
            HHP    T    ++L     RR+S  +  +  VGK DTDLRV+   + Q  D  D++ +
Sbjct: 22  HHHPSVFCTGVAFTRLR---HRRTSNTIFLVPSVGKEDTDLRVSSLQE-QQLDDGDDDND 77

Query: 83  EEATPEDLENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTR 142
           EE TP+DLE +AQ+KRVLELLRKNRDM+F EVKLTIMIED REVERRRLLGIED + PTR
Sbjct: 78  EEPTPQDLEYVAQIKRVLELLRKNRDMIFGEVKLTIMIEDAREVERRRLLGIEDLDGPTR 137

Query: 143 DDLAEALEQVNEGKVPKNRVALRMLAEEMVQWPNLEVEATKQKPSKSLYAKVTDTGIDPE 202
           +DL +AL+++NEGK+PK+R AL+MLAEE+  WPNLE    K+KPSKSLYAK TDTGIDPE
Sbjct: 138 EDLVDALDEINEGKIPKDRAALQMLAEELASWPNLEDALPKKKPSKSLYAKATDTGIDPE 197

Query: 203 MAAKRLNIDWDSAAEIEDAGGGDDPEV 229
           +AAK+LNIDWDSAAEIE+    D+ E+
Sbjct: 198 LAAKKLNIDWDSAAEIEEQNADDETEM 224

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646421|gb|ACU23689.1| unknown [Glycine max]

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 126/198 (63%), Positives = 154/198 (77%), Gaps = 6/198 (3%)

Query: 25  QHHPLFAATSWRASKLCLCCSRRSSQRV--VALVGKGDTDLRVAQENDLQDQDQEDEEEE 82
            HHP  + T    ++L     RR+S  +  V  VGK DTDLRV+   + Q  D  D++ +
Sbjct: 22  HHHPSVSCTGVAFTRLR---HRRTSNTIFLVPSVGKEDTDLRVSSLQE-QQLDDGDDDND 77

Query: 83  EEATPEDLENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTR 142
           EE TP+DLE +AQ+KRVLELLRKNRDM+F EVKLTIMIED REVERRRLLGIED + PTR
Sbjct: 78  EEPTPQDLEYVAQIKRVLELLRKNRDMIFGEVKLTIMIEDAREVERRRLLGIEDLDGPTR 137

Query: 143 DDLAEALEQVNEGKVPKNRVALRMLAEEMVQWPNLEVEATKQKPSKSLYAKVTDTGIDPE 202
           +DL +AL+++NEGK+PK+R AL+MLAEE+  WPNLE    K+KPSKSLYAK TDTGIDPE
Sbjct: 138 EDLVDALDEINEGKIPKDRAALQMLAEELTSWPNLEDALPKKKPSKSLYAKATDTGIDPE 197

Query: 203 MAAKRLNIDWDSAAEIED 220
           +AAK+LNIDWDSAAEIE+
Sbjct: 198 LAAKKLNIDWDSAAEIEE 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053647|ref|XP_002297910.1| predicted protein [Populus trichocarpa] gi|222845168|gb|EEE82715.1| predicted protein [Populus trichocarpa]

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 110/151 (72%), Positives = 131/151 (86%)

Query: 86  TPEDLENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDL 145
           +P+DL+ +  +KRVLELLRKNRDM+FSEVKLT+MIEDPREVERRRLLGI+D++ PTR+DL
Sbjct: 38  SPQDLQYVQDIKRVLELLRKNRDMIFSEVKLTVMIEDPREVERRRLLGIDDADTPTREDL 97

Query: 146 AEALEQVNEGKVPKNRVALRMLAEEMVQWPNLEVEATKQKPSKSLYAKVTDTGIDPEMAA 205
           AEALEQVNEGK+PK R AL+MLAEEM+ WPNLEVEATK KPSKSLYAK TDTGI+ + AA
Sbjct: 98  AEALEQVNEGKIPKKREALQMLAEEMINWPNLEVEATKTKPSKSLYAKATDTGINLKEAA 157

Query: 206 KRLNIDWDSAAEIEDAGGGDDPEVPSALVCF 236
           +RL IDWDSAAEIEDA   D+ +V + L  +
Sbjct: 158 RRLKIDWDSAAEIEDADMNDETDVVTLLQGY 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
TAIR|locus:2152165	280	CEST "AT5G44650" [Arabidopsis	0.566	0.489	0.700	2.5e-49

TAIR|locus:2152165 CEST "AT5G44650" [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 96/137 (70%), Positives = 120/137 (87%)

Query:    93 IAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQV 152
             + ++KRV+ELLR+NRDM+FSEVKLTIMIEDPRE+ERRRLLGIED++ P+RDDLAEALEQV
Sbjct:   110 VNEIKRVIELLRRNRDMIFSEVKLTIMIEDPRELERRRLLGIEDADTPSRDDLAEALEQV 169

Query:   153 NEGKVPKNRVALRMLAEEMVQWPNLEVEATKQKPSKSLYAKVTDTGIDPEMAAKRLNIDW 212
             N+GK+PK+R  LRML EEM++WPNLEVE +K++  KS+YAK TDTGIDP+ AAKRLN++W
Sbjct:   170 NDGKIPKDRATLRMLHEEMIRWPNLEVEVSKKQRGKSMYAKSTDTGIDPKEAAKRLNVEW 229

Query:   213 DSAAEIEDAGGGDDPEV 229
             DSAA IE+    D+  V
Sbjct:   230 DSAAAIEEVDVDDEQGV 246


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.132   0.374    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      242       205   0.00096  111 3  11 22  0.38    33
                                                     31  0.47    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  157 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.55u 0.19s 17.74t   Elapsed:  00:00:01
  Total cpu time:  17.55u 0.19s 17.74t   Elapsed:  00:00:01
  Start:  Fri May 10 00:27:59 2013   End:  Fri May 10 00:28:00 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0048564 "photosystem I assembly" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0010286 "heat acclimation" evidence=IMP

GO:0042538 "hyperosmotic salinity response" evidence=IMP

GO:0080183 "response to photooxidative stress" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	242
d1lmb3_	87	lambda C1 repressor, DNA-binding domain {Bacteriop	82.71

>d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain {Bacteriophage lambda [TaxId: 10710]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: Phage repressors
domain: lambda C1 repressor, DNA-binding domain
species: Bacteriophage lambda [TaxId: 10710]

Probab=82.71  E-value=1.8  Score=29.21  Aligned_cols=64  Identities=19%  Similarity=0.243  Sum_probs=50.4

Q ss_pred             CCChHhHHHHHHHHHHHHHHHhhccccccceEEEEEecCcHHHHHHHhhCCCCCCCCChHHHHHHHHHhhcCCCCchHHH
Q 026164           84 EATPEDLENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVA  163 (242)
Q Consensus        84 e~sPeDl~~v~eIkrvL~lLk~~RDMsF~EVKLTImIEDPR~~Errr~lGIED~~g~srddla~AL~eV~eGriP~dR~A  163 (242)
                      +.||+|++.-..++.+++.+|+.+.||-.++-              +.+||.          -.++-.+..|+..-+-..
T Consensus         1 ~~t~~~~~~~~~l~~~i~~~R~~~gltq~~lA--------------~~lgis----------~~~is~~E~g~~~~s~~~   56 (87)
T d1lmb3_           1 PLTQEQLEDARRLKAIYEKKKNELGLSQESVA--------------DKMGMG----------QSGVGALFNGINALNAYN   56 (87)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHTCCHHHHH--------------HHHTSC----------HHHHHHHHTTSSCCCHHH
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHcCCCHHHHH--------------HHhCcc----------HHHHHHHHhccCCCcHHH
Confidence            46899999999999999999999888866542              356653          346677889999888888


Q ss_pred             HHHHHHHH
Q 026164          164 LRMLAEEM  171 (242)
Q Consensus       164 L~~L~eEm  171 (242)
                      |..|++=+
T Consensus        57 l~~ia~~l   64 (87)
T d1lmb3_          57 AALLAKIL   64 (87)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88887654