Citrus Sinensis ID: 026167

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240--
Protein Sequence
MEDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLRCFST
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEEEccHHHHHHHHccccccccccEEEEEEEccccccccEEEEEEccccccccccccccEEEccccccccEEEEEEcccccEEEEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHccccccEEEcccccccccccccccccccccccccccccccccHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccHHccccccccccccccccEEEEEccHHHHHHHHHccccccccEEEEEEEEcccccccccEEEcHcccccccccccccEEEEcccccccccEEEEEcccccEEEEEEEEEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEccccccccccccccccccccHHHccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHccHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
meddqsnhgngkgnldtakadRSVWLMKCPLVVAKSwqnqassqdsqpVAKVILsldplqsdsmqftMETTAVsndslnrpksyslnmfkdfvpmsvfsesnqgkvamegkvehkfdmkpheknMEEYGRLCRERTNKSMIKNRQiqvidndhgvhmrpmpgmvglissnskdkkkaqpvkqtevkrtrrdrgeLEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPlhhinlrcfst
Flexible Loop (DISEMBL)
meddqsnhgngkgnldtakadrSVWLMKCPLVVAKSWQnqassqdsqPVAKVILSLDPLQSDSMQFTMETTavsndslnrpKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVehkfdmkpheknmeEYGRLCRERtnksmiknrqiqvidndhgvhMRPMPGMVGLIssnskdkkkaqpvkqtevkrtrrdrgelEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLRCFST
Low Complexity Region (SEG)
MEDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLRCFST
Disordered region (IsUnstruct)
*********************RSVWLMKCPLVVAKSW**************************************************MFKDFV******************************************************VI**********************************************EDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLRCF**
Disordered Region (DISOPRED)
******N*GNGKGNLDTAKADRSVWLMKCPLVVAKSW****************L*******************************L***********FSESNQGKVAMEGKVEHKFDMKPHEKNM********************************************************************ELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLRC***
Disordered Region (DISEMBL)
************GNLDTAKADRSVWLMKCPLVVAKSW***********VAKVILSLDPLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISS********************RDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLRCFST
Disordered Region (DISPRO)
**********GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMR*****************************TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLRCFST
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLRCFST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	242	2.2.26 [Sep-21-2011]
O94424	307	Transcription initiation	yes	no	0.917	0.723	0.283	1e-13
P13984	249	General transcription fac	yes	no	0.830	0.807	0.269	4e-10
P41900	277	General transcription fac	yes	no	0.880	0.768	0.240	1e-09
Q2T9L9	249	General transcription fac	yes	no	0.830	0.807	0.264	2e-09
Q8R0A0	249	General transcription fac	yes	no	0.830	0.807	0.260	5e-09
Q01750	249	General transcription fac	yes	no	0.830	0.807	0.260	2e-08
Q54KT7	241	General transcription fac	yes	no	0.747	0.751	0.275	7e-07
Q03123	264	General transcription fac	N/A	no	0.884	0.810	0.232	1e-06

>sp|O94424|T2FB_SCHPO Transcription initiation factor IIF subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfg2 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 114/243 (46%), Gaps = 21/243 (8%)

Query: 2   EDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQS 61
           EDD+  + +  G+LD  +    VWL+K P  +   W N     D+  +  V      +++
Sbjct: 12  EDDR--YEDDAGDLDLGQIGSRVWLVKIPKFLMDKW-NSIPEDDAANLGCV-----RVKN 63

Query: 62  DSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMS-VFSESNQGK----VAMEGKVEHKF 116
           D +Q  ++ +  + D    PK Y+L +   FV  S VF ES         A+ G V H+ 
Sbjct: 64  DEIQLLLQNSPENADV---PKIYNLRVMNKFVRNSYVFRESETSSSMKSTALVGTVAHEC 120

Query: 117 DMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS-SNSKDKK 175
           ++ P     ++Y R+ ++R   +    R++Q+ID+  G  +   PG +G  S S +   +
Sbjct: 121 NVSPVIN--DDYRRVMQKRALAASAPKRKVQMIDDRGGSLL--APGTLGSRSRSTTSFIR 176

Query: 176 KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHI 235
             +P     +K +R  R EL DI+FK FE    W LK L +   QP V+    L  +  +
Sbjct: 177 NVKPRTGEGLKNSRIPRNELLDILFKCFEDYEYWTLKGLREYVKQPEVYLKEVLDSIAIL 236

Query: 236 NLR 238
           N R
Sbjct: 237 NKR 239

TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2

>sp|P13984|T2FB_HUMAN General transcription factor IIF subunit 2 OS=Homo sapiens GN=GTF2F2 PE=1 SV=2

 Score = 65.1 bits (157), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 107/223 (47%), Gaps = 22/223 (9%)

Query: 11  GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
           G+ +L  AK +  VWL+K P  +++ W   A +     V K+ ++    +++ + FT+ E
Sbjct: 5   GELDLTGAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGKLRIAKTQGRTE-VSFTLNE 60

Query: 70  TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
             A  +D   +P S S      FV        ++VF+ES+  K+++EG V  + + +P  
Sbjct: 61  DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120

Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
              E Y RL R +  +S    R  Q +D     + +P+        +N +   + +  K+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170

Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
            + KR R D+  + D++F  FE+   + LK LV  T QP V+ 
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYL 213

TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|P41900|T2FB_DROME General transcription factor IIF subunit 2 OS=Drosophila melanogaster GN=TfIIFbeta PE=2 SV=2

 Score = 63.5 bits (153), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 109/241 (45%), Gaps = 28/241 (11%)

Query: 14  NLDTAKADRSVWLMKCPLVVAKSWQNQASSQD----------------SQPVAKVILSLD 57
           +LD + A R VWL+K P  +A+ W+   ++ D                S  +   +L+LD
Sbjct: 15  DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLALD 74

Query: 58  PLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFD 117
           P +    +  ++ + V+  +L      + +  K+    S     N+ K+ MEG++  K +
Sbjct: 75  PEEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTSAAQPDNE-KLYMEGRIVQKLE 133

Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKA 177
            +P   N   Y +L  E   K+    R++Q ID     + +P+      I    +++KKA
Sbjct: 134 CRPIADNC--YMKLKLESIRKASEPQRRVQPIDK-IVQNFKPVKDHAHNIEY--RERKKA 188

Query: 178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINL 237
                 E K+ R D+  + D++F  FE+   + +K LV+ T+QP  +    L  +   N+
Sbjct: 189 ------EGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNM 242

Query: 238 R 238
           +
Sbjct: 243 K 243

TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q2T9L9|T2FB_BOVIN General transcription factor IIF subunit 2 OS=Bos taurus GN=GTF2F2 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 107/223 (47%), Gaps = 22/223 (9%)

Query: 11  GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
           G+ +L  AK +  VWL+K P  +++ W   A +     V K+ ++ +  +++ + FT+ E
Sbjct: 5   GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60

Query: 70  TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
             A  +D   +P S S      FV        ++VF+ES+  K+++EG V  + + +P  
Sbjct: 61  DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120

Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
              E Y RL R +  +S    R  Q +D     + +P+        +N +   + +  K+
Sbjct: 121 N--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170

Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
            + KR R D+  + D++F  FE+   + LK LV  T QP  + 
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVSYL 213

TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q8R0A0|T2FB_MOUSE General transcription factor IIF subunit 2 OS=Mus musculus GN=Gtf2f2 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 107/223 (47%), Gaps = 22/223 (9%)

Query: 11  GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
           G+ +L  AK +  VWL+K P  +++ W   A +     V K+ ++ +  +++ + FT+ E
Sbjct: 5   GELDLTGAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGKLRIAKNQGRTE-VSFTLNE 60

Query: 70  TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
             A  +D   +P S S      FV        ++VF+ES+  K+++EG V  + + +P  
Sbjct: 61  DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120

Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
              E Y +L R +  +S    R  Q +D     + +P+        +N +   + +  K+
Sbjct: 121 S--ENYMKLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170

Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
            + KR R D+  + D++F  FE+   + LK LV  T QP  + 
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYL 213

TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q01750|T2FB_RAT General transcription factor IIF subunit 2 OS=Rattus norvegicus GN=Gtf2f2 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 106/223 (47%), Gaps = 22/223 (9%)

Query: 11  GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
           G+ +L  AK +  VWL+K P  +++ W   A +     V K+ ++ +  +++ + FT+ E
Sbjct: 5   GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60

Query: 70  TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
             A  +D   +P S S      FV        ++VF+ES+  K+++EG V  + + +P  
Sbjct: 61  DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120

Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
              E Y +L R +  +S    R  Q  D     + +P+        +N +   + +  K+
Sbjct: 121 S--ENYMKLKRLQIEESSKPVRLSQQADKVVTTNYKPV--------ANHQYNIEYERKKK 170

Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
            + KR R D+  + D++F  FE+   + LK LV  T QP  + 
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYL 213

TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q54KT7|T2FB_DICDI General transcription factor IIF subunit 2 OS=Dictyostelium discoideum GN=gtf2f2 PE=3 SV=2

 Score = 54.7 bits (130), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 93/218 (42%), Gaps = 37/218 (16%)

Query: 13  GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAK----VILSLDPLQSDSMQFTM 68
           G ++T  AD  VWL+K P  +++SWQ     +  Q   K    + LS  P      +F +
Sbjct: 11  GEVNTDNADNQVWLIKVPKFLSESWQKIGQGEIGQIHIKGGDNISLSYGP--DVGQEFQL 68

Query: 69  ETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEY 128
            TTA + D+                P+ +FSE   G +A+EG +  + D+K   ++  +Y
Sbjct: 69  ITTANTLDN---------------QPLKIFSEDKDGALALEGNIGLRCDIKIDVES-PQY 112

Query: 129 GRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRT 188
             L + R  K   K R  QVID        P      L  +N   K K   V  T+ K++
Sbjct: 113 RDLMKSRHTKYNTKTRMTQVIDESE--LFTPT-----LFDAN---KVKVSTVGITQKKKS 162

Query: 189 RRD-----RGELEDIMFKLFERQPNWALKQLVQETDQP 221
                     E+ D++F  F  + +  LK L   T+QP
Sbjct: 163 TDKKEKLPEDEVLDLIFSAFRAEKHLDLKTLESFTEQP 200

TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q03123|T2FB_XENLA General transcription factor IIF subunit 2 OS=Xenopus laevis GN=gtf2f2 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 117/250 (46%), Gaps = 36/250 (14%)

Query: 11  GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
           G+ +L+ AK +  +WL+K P  +A+ W   A +     V K+ +  +  +++ + FT+ E
Sbjct: 6   GELDLNGAKQNTGMWLVKLPKYLAQQW---AKATGRGEVGKLRIVKNQGKTE-VSFTLNE 61

Query: 70  TTAVSNDSLNRPKSYSLNMFKD--FV-------PMSVFSESNQG------------KVAM 108
             A   D   +P S  ++  ++  F+        ++V +ES  G            K+A+
Sbjct: 62  ELASIQDIGGKPASSLVSTPREHPFLLQSVGGQTLTVLTESLSGQSEDKSENRVIDKLAL 121

Query: 109 EGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS 168
           EG V H+ + +P   +   Y ++ R++  +S    RQ Q ++     + +P+        
Sbjct: 122 EGIVVHRAECRPAASD--NYMQMKRKQIEESSKPKRQSQQLEKAVTSNYKPV-------- 171

Query: 169 SNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIF 228
           SN +   + +  K+ + KR R D+ ++ D++F  FE+   + +K LV  T QP  +    
Sbjct: 172 SNHQYNIEYEKKKKDDGKRARVDKHQVLDMLFSAFEKHQYYNIKDLVDITKQPVTYLKEI 231

Query: 229 LIPLHHINLR 238
           L  +   N++
Sbjct: 232 LRDIGIYNMK 241

TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
255538806	257	Transcription initiation factor IIF subu	0.950	0.894	0.789	5e-97
317106673	262	JHL18I08.10 [Jatropha curcas]	0.975	0.900	0.759	1e-96
449469921	260	PREDICTED: transcription initiation fact	0.962	0.896	0.736	7e-95
224085774	261	predicted protein [Populus trichocarpa]	0.962	0.892	0.724	2e-93
224062059	265	predicted protein [Populus trichocarpa]	0.917	0.837	0.745	2e-92
356518378	262	PREDICTED: transcription initiation fact	0.962	0.889	0.700	5e-91
302142579	259	unnamed protein product [Vitis vinifera]	0.962	0.899	0.726	8e-91
359807121	262	uncharacterized protein LOC100788473 [Gl	0.909	0.839	0.735	9e-91
388521215	258	unknown [Lotus japonicus]	0.917	0.860	0.730	2e-90
359492177	260	PREDICTED: transcription initiation fact	0.962	0.896	0.727	2e-90

>gi|255538806|ref|XP_002510468.1| Transcription initiation factor IIF subunit beta, putative [Ricinus communis] gi|223551169|gb|EEF52655.1| Transcription initiation factor IIF subunit beta, putative [Ricinus communis]

 Score =  359 bits (922), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 184/233 (78%), Positives = 202/233 (86%), Gaps = 3/233 (1%)

Query: 7   NHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSD-SMQ 65
           +HG+  G L+TAKADRSVWLMKCPLVVA+SW++ ASS DS PVAKV+LSLDPL+SD S+Q
Sbjct: 4   DHGSSSGILETAKADRSVWLMKCPLVVARSWKSHASSSDSHPVAKVVLSLDPLRSDDSLQ 63

Query: 66  FTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNM 125
           FTME     N   N PKSYSLNMFKDFVPMSVFSE+ QG+VA+EGKVEHKFDMKPHE+NM
Sbjct: 64  FTMEMAGTENG--NVPKSYSLNMFKDFVPMSVFSETTQGRVAIEGKVEHKFDMKPHEENM 121

Query: 126 EEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEV 185
           EEYGRLCRERTNKSMIKNRQIQVIDND GVHMRPMPGMVGLISS+SKDKKK  PVKQ+++
Sbjct: 122 EEYGRLCRERTNKSMIKNRQIQVIDNDRGVHMRPMPGMVGLISSSSKDKKKTAPVKQSDM 181

Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
           KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA +    L  L   N R
Sbjct: 182 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKR 234

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106673|dbj|BAJ53176.1| JHL18I08.10 [Jatropha curcas]

 Score =  358 bits (919), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 183/241 (75%), Positives = 207/241 (85%), Gaps = 5/241 (2%)

Query: 1   MEDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQ 60
           M++D  N+G+  G L+TAKADRSVWLMKCPLVVAKSWQ+ ASS DS PVAKV+LSLDPL+
Sbjct: 1   MDEDHGNNGSNSGVLETAKADRSVWLMKCPLVVAKSWQSHASSSDSHPVAKVVLSLDPLR 60

Query: 61  SD---SMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFD 117
           SD   ++QFTME     N+  N PKSYSLNMFKDFVPM VFSE++QG+VAMEGKVEHKFD
Sbjct: 61  SDDPSALQFTMEMAG--NEIGNIPKSYSLNMFKDFVPMCVFSETSQGRVAMEGKVEHKFD 118

Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKA 177
           MKPHE+N+EEYGRLCRERTNKSM+KNRQIQVIDND GVHMRPMPGM+GL+SS+SKDKKK 
Sbjct: 119 MKPHEENIEEYGRLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLMSSSSKDKKKT 178

Query: 178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINL 237
            PVKQ+++KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA +    L  L   N 
Sbjct: 179 APVKQSDMKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNK 238

Query: 238 R 238
           R
Sbjct: 239 R 239

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469921|ref|XP_004152667.1| PREDICTED: transcription initiation factor IIF subunit beta-like [Cucumis sativus] gi|449520699|ref|XP_004167371.1| PREDICTED: transcription initiation factor IIF subunit beta-like [Cucumis sativus]

 Score =  352 bits (904), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 176/239 (73%), Positives = 195/239 (81%), Gaps = 6/239 (2%)

Query: 3   DDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSD 62
           +D+   G    NLDT KADRSVWLMKCPL+VAKSWQ    S DS P+AKVILSLDPLQSD
Sbjct: 2   EDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPS-DSLPLAKVILSLDPLQSD 60

Query: 63  ---SMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMK 119
              S+QF ME      ++ N PKS+SLNMFKDFVPM VFSE++QGKV+MEGKVEHKFDMK
Sbjct: 61  ESSSLQFKMEMAGT--ETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMK 118

Query: 120 PHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQP 179
           PH +N+E YG+LCRERTNKSM+KNRQIQVIDND GVHMRPMPGMVGLISS SK+KKK  P
Sbjct: 119 PHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAP 178

Query: 180 VKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
           VKQ++VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA +    L  L   N R
Sbjct: 179 VKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKR 237

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085774|ref|XP_002307692.1| predicted protein [Populus trichocarpa] gi|118481065|gb|ABK92486.1| unknown [Populus trichocarpa] gi|222857141|gb|EEE94688.1| predicted protein [Populus trichocarpa]

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 176/243 (72%), Positives = 200/243 (82%), Gaps = 10/243 (4%)

Query: 1   MEDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQAS--SQDSQPVAKVILSLDP 58
           ME+D S+      NL+T+KAD+SVWLMKCP+VVAKSW+   S  S DS P+AKV+LSLDP
Sbjct: 1   MEEDNSSSS---ANLETSKADKSVWLMKCPVVVAKSWKTHTSPSSSDSAPLAKVVLSLDP 57

Query: 59  LQSD---SMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHK 115
           LQSD   ++QFTME      ++ N PKSYSLNMFKDFVPM VFSE+ QGKVAMEGKVEHK
Sbjct: 58  LQSDDPSALQFTMEM--ARTEAGNVPKSYSLNMFKDFVPMCVFSETPQGKVAMEGKVEHK 115

Query: 116 FDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKK 175
           FDMKPHE+N+EEY +LCRERT KSM+K RQIQVI+ND GVHMRPMPGMVGLISS+SKDKK
Sbjct: 116 FDMKPHEQNIEEYHKLCRERTKKSMVKIRQIQVINNDRGVHMRPMPGMVGLISSSSKDKK 175

Query: 176 KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHI 235
           + QPVKQ++VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA +    L  L   
Sbjct: 176 RPQPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVY 235

Query: 236 NLR 238
           N R
Sbjct: 236 NKR 238

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062059|ref|XP_002300734.1| predicted protein [Populus trichocarpa] gi|222842460|gb|EEE80007.1| predicted protein [Populus trichocarpa]

 Score =  344 bits (882), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 170/228 (74%), Positives = 194/228 (85%), Gaps = 6/228 (2%)

Query: 15  LDTAKADRSVWLMKCPLVVAKSWQNQ-ASSQDSQPVAKVILSLDPLQSD---SMQFTMET 70
           L+T+KAD++VWLMKCP+VVAKSW++   SS DS P+AKV+LSLDPLQSD   ++QFTME 
Sbjct: 17  LETSKADKAVWLMKCPVVVAKSWKSHHTSSSDSAPLAKVVLSLDPLQSDDPSAIQFTME- 75

Query: 71  TAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGR 130
                ++ N PKSYSLNMFKDFVPM VFSE+ QG+V+MEGKVEHKFDMKPHE+N+EEY +
Sbjct: 76  -MARTETGNVPKSYSLNMFKDFVPMGVFSETPQGRVSMEGKVEHKFDMKPHEENIEEYSK 134

Query: 131 LCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRR 190
           LCR+RT KSMIKNRQI+VIDND GVHMRPMPGMVGLISS SKDKKK QPVKQ++VKRTRR
Sbjct: 135 LCRDRTKKSMIKNRQIRVIDNDRGVHMRPMPGMVGLISSTSKDKKKTQPVKQSDVKRTRR 194

Query: 191 DRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
           DRGELEDIMFKLFERQPNWALKQLVQETDQPA +    L  L   N R
Sbjct: 195 DRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKR 242

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518378|ref|XP_003527856.1| PREDICTED: transcription initiation factor IIF subunit beta-like [Glycine max]

 Score =  339 bits (870), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 171/244 (70%), Positives = 196/244 (80%), Gaps = 11/244 (4%)

Query: 1   MEDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQ 60
           M+++    G+   NL+T KA+RSVWLMKCPLVVAKSWQ    SQ   P+AKV+LSLDPL 
Sbjct: 1   MDEENGYSGSISSNLETTKAERSVWLMKCPLVVAKSWQTHPPSQ---PLAKVVLSLDPLH 57

Query: 61  SD-----SMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQG-KVAMEGKVEH 114
            +     ++QFTME      +++N  K+YSLNMFKDFVPM VFSE++QG KVAMEGKVEH
Sbjct: 58  PEEDDPSAVQFTMEMAGT--EAVNMSKTYSLNMFKDFVPMCVFSETSQGGKVAMEGKVEH 115

Query: 115 KFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDK 174
           KFDMKPH +N+EEYG+LCRERTNKSMIKNRQIQVIDND GV MRPMPGM+GL+SSNSKDK
Sbjct: 116 KFDMKPHGENIEEYGKLCRERTNKSMIKNRQIQVIDNDRGVLMRPMPGMIGLVSSNSKDK 175

Query: 175 KKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHH 234
           KK QPVKQ++ KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA +    L  L  
Sbjct: 176 KKTQPVKQSDTKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCV 235

Query: 235 INLR 238
            N R
Sbjct: 236 YNKR 239

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142579|emb|CBI19782.3| unnamed protein product [Vitis vinifera]

 Score =  338 bits (868), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 175/241 (72%), Positives = 199/241 (82%), Gaps = 8/241 (3%)

Query: 1   MEDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQ 60
           ME++Q N  +   NL+T KA+RSVWLMKCPL V+KS     SS +SQPVAKV+LSLDPL+
Sbjct: 1   MEEEQGNSSSS--NLETGKAERSVWLMKCPLAVSKS-WQSHSSSESQPVAKVVLSLDPLR 57

Query: 61  SD---SMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFD 117
           S+   +++FTME T     + N PKSYSLNMFKDFVPM VFSE+NQG+VAMEGKVEHKFD
Sbjct: 58  SEDPSALEFTMEMTGTG--APNMPKSYSLNMFKDFVPMCVFSETNQGRVAMEGKVEHKFD 115

Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKA 177
           MKPH +N+EEYG+LCRERTNKSMIKNRQIQVIDND GVHMRPMPGMVGLI+SNSKDKKK 
Sbjct: 116 MKPHNENIEEYGKLCRERTNKSMIKNRQIQVIDNDRGVHMRPMPGMVGLIASNSKDKKKT 175

Query: 178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINL 237
            PVK +++KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA +    L  L   N 
Sbjct: 176 APVKGSDMKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNK 235

Query: 238 R 238
           R
Sbjct: 236 R 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807121|ref|NP_001241605.1| uncharacterized protein LOC100788473 [Glycine max] gi|255646380|gb|ACU23669.1| unknown [Glycine max]

 Score =  338 bits (868), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 170/231 (73%), Positives = 192/231 (83%), Gaps = 11/231 (4%)

Query: 14  NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSD-----SMQFTM 68
           NL+T KA+RSVWLMKCPLVVAKSWQ    SQ   P+AKV+LSLDPL  +     ++QFTM
Sbjct: 14  NLETTKAERSVWLMKCPLVVAKSWQAHPPSQ---PLAKVVLSLDPLHPEEDDPSAVQFTM 70

Query: 69  ETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQG-KVAMEGKVEHKFDMKPHEKNMEE 127
           E     ++++N PK+YSLNMFKDFVPM VFSE++QG KVAMEGKVEHKFDMKPH +N+EE
Sbjct: 71  EMAG--SEAVNMPKTYSLNMFKDFVPMCVFSETSQGGKVAMEGKVEHKFDMKPHGENIEE 128

Query: 128 YGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKR 187
           YG+LCRERTNKSMIKNRQIQVIDND GV MRPMPGM+GL+SSNSKDKKK QPVKQ++ KR
Sbjct: 129 YGKLCRERTNKSMIKNRQIQVIDNDRGVLMRPMPGMIGLVSSNSKDKKKTQPVKQSDTKR 188

Query: 188 TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
           TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA +    L  L   N R
Sbjct: 189 TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKR 239

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521215|gb|AFK48669.1| unknown [Lotus japonicus]

 Score =  337 bits (865), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 168/230 (73%), Positives = 195/230 (84%), Gaps = 8/230 (3%)

Query: 14  NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDS----MQFTME 69
           N++T+KA+RSVWLMKCP+VVAKSWQN   S  SQP++KV+LSLDPL  +     +QFTME
Sbjct: 9   NVETSKAERSVWLMKCPVVVAKSWQNHHPS-PSQPLSKVVLSLDPLLPEDDPSHLQFTME 67

Query: 70  TTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQG-KVAMEGKVEHKFDMKPHEKNMEEY 128
            T   ++++N PK+Y+LNMFKDFVPM VFSE++QG KVAMEGKVEHKFDMKPH +N+EEY
Sbjct: 68  MTG--SEAVNMPKTYALNMFKDFVPMCVFSETSQGGKVAMEGKVEHKFDMKPHGENIEEY 125

Query: 129 GRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRT 188
           G+LCRERTNKSMIKNRQIQVIDND GV MRPMPGM+GL+SSNSKDKK+ QPVKQ++ KRT
Sbjct: 126 GKLCRERTNKSMIKNRQIQVIDNDRGVLMRPMPGMIGLVSSNSKDKKRTQPVKQSDTKRT 185

Query: 189 RRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
           RRDRGELEDIMFKLFERQPNWALKQLVQETDQPA +    L  L   N R
Sbjct: 186 RRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKR 235

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492177|ref|XP_002279990.2| PREDICTED: transcription initiation factor IIF subunit beta [Vitis vinifera]

 Score =  337 bits (864), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 176/242 (72%), Positives = 197/242 (81%), Gaps = 9/242 (3%)

Query: 1   MEDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQ 60
           ME++Q N  +   NL+T KA+RSVWLMKCPL V+KS     SS +SQPVAKV+LSLDPL+
Sbjct: 1   MEEEQGNSSSS--NLETGKAERSVWLMKCPLAVSKS-WQSHSSSESQPVAKVVLSLDPLR 57

Query: 61  SDS----MQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKF 116
           S+      QFTME T     + N PKSYSLNMFKDFVPM VFSE+NQG+VAMEGKVEHKF
Sbjct: 58  SEDPSALEQFTMEMTGTG--APNMPKSYSLNMFKDFVPMCVFSETNQGRVAMEGKVEHKF 115

Query: 117 DMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKK 176
           DMKPH +N+EEYG+LCRERTNKSMIKNRQIQVIDND GVHMRPMPGMVGLI+SNSKDKKK
Sbjct: 116 DMKPHNENIEEYGKLCRERTNKSMIKNRQIQVIDNDRGVHMRPMPGMVGLIASNSKDKKK 175

Query: 177 AQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHIN 236
             PVK +++KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA +    L  L   N
Sbjct: 176 TAPVKGSDMKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYN 235

Query: 237 LR 238
            R
Sbjct: 236 KR 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
TAIR|locus:2005674	261	AT1G75510 [Arabidopsis thalian	0.855	0.793	0.665	5.3e-72
POMBASE|SPBC1198.13c	307	tfg2 "transcription factor TFI	0.917	0.723	0.288	2.3e-16
UNIPROTKB|P13984	249	GTF2F2 "General transcription	0.822	0.799	0.282	2.1e-11
UNIPROTKB|Q2T9L9	249	GTF2F2 "General transcription	0.809	0.787	0.277	2e-10
FB|FBgn0010421	277	TfIIFbeta "Transcription facto	0.809	0.707	0.254	2.6e-10
MGI|MGI:1915955	249	Gtf2f2 "general transcription	0.809	0.787	0.277	2.7e-10
UNIPROTKB|Q63489	249	Gtf2f2 "RAP30" [Rattus norvegi	0.809	0.787	0.272	5.3e-10
RGD|620772	249	Gtf2f2 "general transcription	0.809	0.787	0.272	1.4e-09
UNIPROTKB|E2RGQ0	245	GTF2F2 "Uncharacterized protei	0.809	0.8	0.268	6.2e-09
ZFIN|ZDB-GENE-050417-374	256	gtf2f2b "general transcription	0.805	0.761	0.259	1.9e-07

TAIR|locus:2005674 AT1G75510 [Arabidopsis thaliana (taxid:3702)]

 Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
 Identities = 145/218 (66%), Positives = 170/218 (77%)

Query:    14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQ-------DSQP-VAKVILSLDPLQSDSM- 64
             NLD  K+DRS+WLMKCP+VV K+W   A+S        DS P +AK++  +DPL+ DS  
Sbjct:     6 NLDIEKSDRSIWLMKCPVVVDKAWHKIAASSSSSFASSDSPPDMAKIVREVDPLRDDSPP 65

Query:    65 QFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKN 124
             +F M    V  +  N PK Y+LNMF DFVPM  FS+ NQG  A EGKV+HKFDMKP+ + 
Sbjct:    66 EFKMYM--VGAEYGNMPKCYALNMFTDFVPMGGFSDVNQGCAAAEGKVDHKFDMKPYGET 123

Query:   125 MEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTE 184
             +EEY RLCRERT+K+M+KNRQIQVIDND GVHMRPMPGM+GL+SSNSK+K+K  PVKQTE
Sbjct:   124 IEEYARLCRERTSKAMVKNRQIQVIDNDRGVHMRPMPGMLGLVSSNSKEKRKPPPVKQTE 183

Query:   185 VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA 222
             VKRTRRDRGELE IMFKLFE QPNW LKQLVQETDQPA
Sbjct:   184 VKRTRRDRGELEAIMFKLFEGQPNWTLKQLVQETDQPA 221

GO:0003824 "catalytic activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0005674 "transcription factor TFIIF complex" evidence=IEA;ISS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA;RCA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA;ISS

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

POMBASE|SPBC1198.13c tfg2 "transcription factor TFIIF complex beta subunit Tfg2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 70/243 (28%), Positives = 115/243 (47%)

Query:     2 EDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQS 61
             EDD+  + +  G+LD  +    VWL+K P  +   W N     D+  +  V      +++
Sbjct:    12 EDDR--YEDDAGDLDLGQIGSRVWLVKIPKFLMDKW-NSIPEDDAANLGCV-----RVKN 63

Query:    62 DSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMS-VFSESNQGK----VAMEGKVEHKF 116
             D +Q  ++    S ++ + PK Y+L +   FV  S VF ES         A+ G V H+ 
Sbjct:    64 DEIQLLLQN---SPENADVPKIYNLRVMNKFVRNSYVFRESETSSSMKSTALVGTVAHEC 120

Query:   117 DMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS-SNSKDKK 175
             ++ P     ++Y R+ ++R   +    R++Q+ID D G  +   PG +G  S S +   +
Sbjct:   121 NVSPVIN--DDYRRVMQKRALAASAPKRKVQMID-DRGGSLLA-PGTLGSRSRSTTSFIR 176

Query:   176 KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHI 235
               +P     +K +R  R EL DI+FK FE    W LK L +   QP V+    L  +  +
Sbjct:   177 NVKPRTGEGLKNSRIPRNELLDILFKCFEDYEYWTLKGLREYVKQPEVYLKEVLDSIAIL 236

Query:   236 NLR 238
             N R
Sbjct:   237 NKR 239

GO:0000991 "core RNA polymerase II binding transcription factor activity" evidence=ISS

GO:0003677 "DNA binding" evidence=IEA

GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM

GO:0005524 "ATP binding" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0005674 "transcription factor TFIIF complex" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISS

GO:0044732 "mitotic spindle pole body" evidence=IDA

UNIPROTKB|P13984 GTF2F2 "General transcription factor IIF subunit 2" [Homo sapiens (taxid:9606)]

 Score = 166 (63.5 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 63/223 (28%), Positives = 109/223 (48%)

Query:    12 KGNLDT--AKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM- 68
             +G LD   AK +  VWL+K P  +++ W  +AS +    V K+ ++    +++ + FT+ 
Sbjct:     4 RGELDLTGAKQNTGVWLVKVPKYLSQQWA-KASGRGE--VGKLRIAKTQGRTE-VSFTLN 59

Query:    69 ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPH 121
             E  A  +D   +P S S      FV        ++VF+ES+  K+++EG V  + + +P 
Sbjct:    60 EDLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPA 119

Query:   122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVK 181
                 E Y RL R +  +S    R  Q +D     + +P+         N + ++K    K
Sbjct:   120 AS--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANH----QYNIEYERK----K 169

Query:   182 QTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVW 224
             + + KR R D+  + D++F  FE+   + LK LV  T QP V+
Sbjct:   170 KEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVY 212

GO:0005674 "transcription factor TFIIF complex" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=TAS

GO:0006370 "7-methylguanosine mRNA capping" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0050434 "positive regulation of viral transcription" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0015630 "microtubule cytoskeleton" evidence=IDA

UNIPROTKB|Q2T9L9 GTF2F2 "General transcription factor IIF subunit 2" [Bos taurus (taxid:9913)]

 Score = 160 (61.4 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 61/220 (27%), Positives = 106/220 (48%)

Query:    12 KGNLDT--AKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM- 68
             +G LD   AK +  VWL+K P  +++ W   A +     V K+ ++ +  +++ + FT+ 
Sbjct:     4 RGELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLN 59

Query:    69 ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPH 121
             E  A  +D   +P S S      FV        ++VF+ES+  K+++EG V  + + +P 
Sbjct:    60 EDLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPA 119

Query:   122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVK 181
                 E Y RL R +  +S    R  Q +D     + +P+         N + ++K    K
Sbjct:   120 AN--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANH----QYNIEYERK----K 169

Query:   182 QTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
             + + KR R D+  + D++F  FE+   + LK LV  T QP
Sbjct:   170 KEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQP 209

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005674 "transcription factor TFIIF complex" evidence=IEA

FB|FBgn0010421 TfIIFbeta "Transcription factor TFIIFbeta" [Drosophila melanogaster (taxid:7227)]

 Score = 161 (61.7 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 57/224 (25%), Positives = 104/224 (46%)

Query:    14 NLDTAKADRSVWLMKCPLVVAKSWQ-------------NQASSQDSQ---PVAKVILSLD 57
             +LD + A R VWL+K P  +A+ W+             N+   Q +Q    +   +L+LD
Sbjct:    15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLALD 74

Query:    58 PLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFD 117
             P +    +  ++ + V+  +L      + +  K+    S     N+ K+ MEG++  K +
Sbjct:    75 PEEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTSAAQPDNE-KLYMEGRIVQKLE 133

Query:   118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKA 177
              +P   N   Y +L  E   K+    R++Q ID     + +P+      I    +++KKA
Sbjct:   134 CRPIADNC--YMKLKLESIRKASEPQRRVQPIDKIVQ-NFKPVKDHAHNIEY--RERKKA 188

Query:   178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
                   E K+ R D+  + D++F  FE+   + +K LV+ T+QP
Sbjct:   189 ------EGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQP 226

GO:0060261 "positive regulation of transcription initiation from RNA polymerase II promoter" evidence=IDA

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=IDA

GO:0001096 "TFIIF-class transcription factor binding" evidence=IPI

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0005674 "transcription factor TFIIF complex" evidence=ISS;IDA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=NAS

GO:0004003 "ATP-dependent DNA helicase activity" evidence=NAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISS

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:1915955 Gtf2f2 "general transcription factor IIF, polypeptide 2" [Mus musculus (taxid:10090)]

 Score = 159 (61.0 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 61/220 (27%), Positives = 108/220 (49%)

Query:    12 KGNLDT--AKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM- 68
             +G LD   AK +  VWL+K P  +++ W  +AS +    V K+ ++ +  +++ + FT+ 
Sbjct:     4 RGELDLTGAKQNTGVWLVKVPKYLSQQWA-KASGRGE--VGKLRIAKNQGRTE-VSFTLN 59

Query:    69 ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPH 121
             E  A  +D   +P S S      FV        ++VF+ES+  K+++EG V  + + +P 
Sbjct:    60 EDLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPA 119

Query:   122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVK 181
                 E Y +L R +  +S    R  Q +D     + +P+         N + ++K    K
Sbjct:   120 AS--ENYMKLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANH----QYNIEYERK----K 169

Query:   182 QTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
             + + KR R D+  + D++F  FE+   + LK LV  T QP
Sbjct:   170 KEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQP 209

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005674 "transcription factor TFIIF complex" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

UNIPROTKB|Q63489 Gtf2f2 "RAP30" [Rattus norvegicus (taxid:10116)]

 Score = 157 (60.3 bits), Expect = 5.3e-10, P = 5.3e-10
 Identities = 60/220 (27%), Positives = 106/220 (48%)

Query:    12 KGNLDT--AKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM- 68
             +G LD   AK +  VWL+K P  +++ W   A +     V K+ ++ +  +++ + FT+ 
Sbjct:     4 RGELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLN 59

Query:    69 ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPH 121
             E  A  +D   +P S S      FV        ++VF+ES+  K+++EG V  + + +P 
Sbjct:    60 EDLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPA 119

Query:   122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVK 181
                 E Y +L R +  +S    R  Q +D     + +P+         N + ++K    K
Sbjct:   120 AS--ENYMKLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANH----QYNIEYERK----K 169

Query:   182 QTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
             + + KR R D+  + D++F  FE+   + LK LV  T QP
Sbjct:   170 KEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQP 209

GO:0005674 "transcription factor TFIIF complex" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

RGD|620772 Gtf2f2 "general transcription factor IIF, polypeptide 2" [Rattus norvegicus (taxid:10116)]

 Score = 154 (59.3 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 60/220 (27%), Positives = 105/220 (47%)

Query:    12 KGNLDT--AKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM- 68
             +G LD   AK +  VWL+K P  +++ W   A +     V K+ ++ +  +++ + FT+ 
Sbjct:     4 RGELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLN 59

Query:    69 ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPH 121
             E  A  +D   +P S S      FV        ++VF+ES+  K+++EG V  + + +P 
Sbjct:    60 EDLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPA 119

Query:   122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVK 181
                 E Y +L R +  +S    R  Q  D     + +P+         N + ++K    K
Sbjct:   120 AS--ENYMKLKRLQIEESSKPVRLSQQADKVVTTNYKPVANH----QYNIEYERK----K 169

Query:   182 QTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
             + + KR R D+  + D++F  FE+   + LK LV  T QP
Sbjct:   170 KEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQP 209

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005674 "transcription factor TFIIF complex" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA;ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

UNIPROTKB|E2RGQ0 GTF2F2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 149 (57.5 bits), Expect = 6.2e-09, P = 6.2e-09
 Identities = 59/220 (26%), Positives = 105/220 (47%)

Query:    12 KGNLD--TAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM- 68
             +G LD  + K +  VWL+K P  +++ W   A       V K+ ++ +  +++ + FT+ 
Sbjct:     4 RGELDLTSTKQNTGVWLVKVPKYLSQQW---AKDPGRGEVGKLRIAKNQGRTE-VSFTLN 59

Query:    69 ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPH 121
             E  A  +D   +  S S      FV        ++VF+ES+  K+++EG V  + + +P 
Sbjct:    60 EDLANIHDIGGKLASVSTPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRP- 118

Query:   122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVK 181
                 E+Y RL R +  +S    R  Q +D     + +P+         N + ++K    K
Sbjct:   119 -ATSEKYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANH----QYNIEYERK----K 169

Query:   182 QTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
             + + KR R D+  + D++F  FE+   + LK LV  T QP
Sbjct:   170 KEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQP 209

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005674 "transcription factor TFIIF complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-050417-374 gtf2f2b "general transcription factor IIF, polypeptide 2b" [Danio rerio (taxid:7955)]

 Score = 138 (53.6 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 57/220 (25%), Positives = 107/220 (48%)

Query:    14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSM-QFTM--ET 70
             +L  AK +  VWL+K P  +++ W  +AS +    V K  L +   Q  ++  F +  E 
Sbjct:     9 DLTRAKQNTGVWLVKVPKYLSQQWA-KASGRGE--VGK--LKIGKAQGKTVVSFNLNEEL 63

Query:    71 TAV--SND---SLNRPKSYSLNMFK-DFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKN 124
             T V  S +   S+  P+ +   M       ++VF+ES+  K+A+EG V  + + +P    
Sbjct:    64 TVVDCSGEKISSVRSPREHPFTMQTVGGQTLAVFTESSD-KIALEGMVVQRAECRPAVS- 121

Query:   125 MEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTE 184
              E Y +L + +  +S    R  Q ++     + +P+       S N + +K+    K+ E
Sbjct:   122 -ESYMKLKKLQIEESTKPLRFSQRLEKAITTNYKPVSNH----SHNLEYEKR----KKEE 172

Query:   185 VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVW 224
              KR R D+ ++ +++F  FE+   + ++ LV  T QP ++
Sbjct:   173 GKRARADKQKVLEMLFSAFEKHQFYNIRDLVDITKQPVIY 212

GO:0005634 "nucleus" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005674 "transcription factor TFIIF complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.4.12	LOW CONFIDENCE prediction!
3rd Layer	3.6.4	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	242
pfam02270	259	pfam02270, TFIIF_beta, Transcription initiation fa	2e-47
COG5090	297	COG5090, TFG2, Transcription initiation factor IIF	3e-20

>gnl|CDD|216954 pfam02270, TFIIF_beta, Transcription initiation factor IIF, beta subunit

 Score =  157 bits (398), Expect = 2e-47
 Identities = 71/245 (28%), Positives = 108/245 (44%), Gaps = 47/245 (19%)

Query: 12  KGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETT 71
            G+LD + A +SVWL+K P  +++ W         + V K+ +  +      +   +   
Sbjct: 1   SGDLDLSNAKQSVWLVKVPKYLSEKWSKAPGDSGGE-VGKLRIKKNNGGKAQVSLLL--- 56

Query: 72  AVSNDSLNR---PKSYSLNMFKDFV-PMSVFSESNQG----------------------- 104
              N+ L     PK Y L+M    V    VF+ESN G                       
Sbjct: 57  ---NEELENYDIPKEYDLDMQNVNVQNTYVFTESNLGKYKQKSKEVAGMPEQPQLAYPYV 113

Query: 105 -----KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRP 159
                K A+EG+V H+ + +P E   EEY RL ++R  K+    R +QV+D    V    
Sbjct: 114 KTIPKKTALEGRVVHECECRPVEN--EEYMRLKKKRILKASKPKRTVQVLDKI--VTQSY 169

Query: 160 MPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETD 219
            P      S+NS+   K    K++E KR R  + EL D++FK FE+   W+LK L + T 
Sbjct: 170 KP--PSNHSNNSEYFIKK--KKKSEGKRARMPKNELLDLLFKAFEKHQYWSLKDLKERTR 225

Query: 220 QPAVW 224
           QP  +
Sbjct: 226 QPEAY 230

Accurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II. Transcription initiation factor IIF (TFIIF) is a tetramer of two beta subunits associate with two alpha subunits which interacts directly with RNA polymerase II. The beta subunit of TFIIF is required for recruitment of RNA polymerase II onto the promoter. Length = 259

>gnl|CDD|227421 COG5090, TFG2, Transcription initiation factor IIF, small subunit (RAP30) [Transcription]

 Score = 86.9 bits (215), Expect = 3e-20
 Identities = 60/216 (27%), Positives = 90/216 (41%), Gaps = 16/216 (7%)

Query: 14  NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
           +LD       VWL+K PL +A+ W     ++  + +     S DP     +   +     
Sbjct: 21  DLDLNNRHTKVWLVKVPLFLAEKW-LSREAEIGELLGTKRTSTDPAV---ISLLLSN--- 73

Query: 74  SNDSLNRPKSYSLNMFKDFVPMS-VFSESNQG----KVAMEGKVEHKFDMKPHEKNMEEY 128
              +   P SY L +    V    VF ES         A+ G V H+  + P E N +EY
Sbjct: 74  EFCNGGFPSSYDLKIKPKDVNNYYVFRESETSTHEKNTAVVGTVNHECYVTP-EVN-DEY 131

Query: 129 GRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRT 188
            R  ++R  KS  K   +QVID   G           L SS  +   + +     + KR 
Sbjct: 132 LRYKQDRGFKSDSKKSDVQVIDYLKGGKRGE--KFGSLRSSTLEFLARKRKKMLMDKKRE 189

Query: 189 RRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVW 224
           R  + E+ D++FK FE+ P W LK L +   QP  +
Sbjct: 190 RLPKNEVLDMLFKAFEKYPYWTLKGLAEFCGQPEAF 225

Length = 297

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	242
KOG2905	254	consensus Transcription initiation factor IIF, sma	100.0
PF02270	275	TFIIF_beta: Transcription initiation factor IIF, b	100.0
COG5090	297	TFG2 Transcription initiation factor IIF, small su	100.0
PF05132	131	RNA_pol_Rpc4: RNA polymerase III RPC4; InterPro: I	83.22
PF09734	310	Tau95: RNA polymerase III transcription factor (TF	82.2

>KOG2905 consensus Transcription initiation factor IIF, small subunit (RAP30) [Transcription]

Probab=100.00  E-value=1.1e-65  Score=442.78  Aligned_cols=217  Identities=37%  Similarity=0.575  Sum_probs=191.2

Q ss_pred             CCcccccCCCCCcEEEEeccHHHHHHHhcccCCCCCcceeEEEEEcCCCCCCCceEEEEeccc-------CCCCCCCCce
Q 026167           11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV-------SNDSLNRPKS   83 (242)
Q Consensus        11 ~~~~Ld~~~a~~~vWLvKVPk~L~e~W~~~~~~~~~~~lG~iri~~~~~~~~~~~~~l~l~~~-------~~~~~~~Pke   83 (242)
                      +.++||.++++++|||||||+||+++|..++.+.   ++|+++|.+.++. .+  +.|.|++.       ..+.+.+|..
T Consensus         7 ~~~dl~l~~~~~~vWLvKvP~fLa~kw~~~~~~~---e~g~l~i~k~~~d-ak--i~l~L~e~~p~~~~~~a~~g~~p~~   80 (254)
T KOG2905|consen    7 ESLDLDLENSGRGVWLVKVPKFLAEKWRKIPNSH---ESGKLRINKTPSD-AK--IVLLLNEAIPEKQEREADVGKFPQQ   80 (254)
T ss_pred             hhhhhccccccceEEEEeccHHHHHHHHhccccc---ccccccccCCCCc-ce--EEEEeccccccchhhhhhcccCchh
Confidence            6789999999999999999999999999777533   7999999977542 34  44444421       1346789999


Q ss_pred             eeeccccCCcceEEEEecC-CCceeEEEEEeeEeEEeecCCChHHHHHHHHHHhhHhhcCCCceEEeccCCCcccccCCC
Q 026167           84 YSLNMFKDFVPMSVFSESN-QGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPG  162 (242)
Q Consensus        84 y~l~~~~~~~~~~VFse~~-~~~~~l~G~V~~e~~~~P~~~~n~~Y~~l~r~R~~~a~~p~R~vq~ld~~~~~~~~p~~~  162 (242)
                      |.+++...+.|+||||+++ +++++++|+|+|+|+|+|+  .|++|++++++|+.+++.|+|+||+||+++|++|+|++|
T Consensus        81 ~~~~~~~~~~~~~~~sd~~~~~k~a~eG~V~~e~~~~P~--~ne~Y~Rl~r~r~~k~~~k~r~vQ~iD~~~g~~~~p~~~  158 (254)
T KOG2905|consen   81 YKLNMKRRFFNMFVESDSSGPKKTAVEGTVVHECDVRPS--ANEEYMRLKRERIVKASKKKRQVQVIDKVVGVHMKPVPG  158 (254)
T ss_pred             hhhccCccccceeeeecCCCCccceeeeeeeeeeecccc--cCHHHHHHHHHHHHHhcCcccccccchhhcccccccCCC
Confidence            9999999999999999998 7899999999999999999  569999999999999999999999999999999999999


Q ss_pred             cccccccCcccccccccccccccccccCChhHHHHHHHHhhhhCCCcchHHHHHhcCCcHHHHHHHHHHhhHhhcCC
Q 026167          163 MVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLRC  239 (242)
Q Consensus       163 ~~~~~~~~~~~~k~~~~~kk~e~K~~Rm~k~eLld~LF~lFe~~~yWslK~L~~~t~QPe~yLKEiL~eIa~lnk~G  239 (242)
                      |...++..+++++|    .++++|++|+||+||+|+||+|||+|+||+||+|+++|+||++||||||++||+||++|
T Consensus       159 ~~~~~~~~~~~rkK----~k~e~Kr~R~dk~evld~lFk~FEk~~ywtlK~Lv~~t~QP~~fLKEiL~~icv~NkKg  231 (254)
T KOG2905|consen  159 HLRSSSNIAYERKK----AKEEGKRTRRDKNEVLDMLFKAFEKYQYWTLKDLVEITKQPEAFLKEILKDICVLNKKG  231 (254)
T ss_pred             cccccchhHHHHHh----hhhccccccccHHHHHHHHHHHhhcCccccHHHHHHHhcCHHHHHHHHHHHHHHHhccC
Confidence            97544444465431    47899999999999999999999999999999999999999999999999999999999

>PF02270 TFIIF_beta: Transcription initiation factor IIF, beta subunit; InterPro: IPR003196 Accurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II

Probab=100.00  E-value=1.2e-63  Score=447.88  Aligned_cols=217  Identities=37%  Similarity=0.557  Sum_probs=118.5

Q ss_pred             CcccccCCCCCcEEEEeccHHHHHHHhcccCCCCCcceeEEEEEcCCCCCCCceEEEEecccCCCCCCCCceeeeccccC
Q 026167           12 KGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKD   91 (242)
Q Consensus        12 ~~~Ld~~~a~~~vWLvKVPk~L~e~W~~~~~~~~~~~lG~iri~~~~~~~~~~~~~l~l~~~~~~~~~~Pkey~l~~~~~   91 (242)
                      +++||+++|+++|||||||+|||++|++..+ +++++||+|+|+.+++++  .+++|.|+.....++.+|++|+|+|++.
T Consensus         1 ~~~LD~s~a~~~vWLvKVPk~l~e~W~~~~~-~~~~~iG~lri~~~~~~~--~~v~l~L~~~~~~~~~iPkey~L~~~~~   77 (275)
T PF02270_consen    1 DGDLDTSKADRSVWLVKVPKFLSEKWSKAPD-DDEIEIGKLRISKDPNGK--PKVSLTLNDSLANHGNIPKEYDLDMSKD   77 (275)
T ss_dssp             -TBEE-HHHHTEEEEEEEEHHHHHHHTTSBT-T--TEEEEEEEEEE-TTE--EEEEEEE-HHHHT-T-S--EEEEEEE--
T ss_pred             Ccccccccccccccccccccccccccccccc-cccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence            4799999999999999999999999996654 367899999999884433  3555555554345578999999999988


Q ss_pred             C-cceEEEEecCC-------------------------------------------CceeEEEEEeeEeEEeecCCChHH
Q 026167           92 F-VPMSVFSESNQ-------------------------------------------GKVAMEGKVEHKFDMKPHEKNMEE  127 (242)
Q Consensus        92 ~-~~~~VFse~~~-------------------------------------------~~~~l~G~V~~e~~~~P~~~~n~~  127 (242)
                      . +|+|||||.+.                                           ++++|+|+|.|+|+|+|+  .+++
T Consensus        78 ~~~n~~VFse~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~G~I~~~~~~~P~--~~~~  155 (275)
T PF02270_consen   78 NVQNMYVFSESDQPGFKAKNKERAGAPNAGIPASLLREKKKKDRKRKYQPYVKTIPKKTALEGRIVHECDCRPV--LNDE  155 (275)
T ss_dssp             TTEEEEEEEEETT----------------------------------------ETT--EEEEEEEEEEEEE---------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCceEEEEEEEEEEEeEEC--CCHH
Confidence            7 69999999864                                           589999999999999999  4689


Q ss_pred             HHHHHHHHhhHhhcCCCceEEeccCCCcccccCCCcccccccCcccccccccccccccccccCChhHHHHHHHHhhhhCC
Q 026167          128 YGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQP  207 (242)
Q Consensus       128 Y~~l~r~R~~~a~~p~R~vq~ld~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~kk~e~K~~Rm~k~eLld~LF~lFe~~~  207 (242)
                      |++++++|+.++++|+|++++|++.+...+.|++.+......  |.    .++|++++|++|||+++|+|+||+|||+|+
T Consensus       156 Y~~~~~~r~~~a~~~kr~~~~i~~~~~~~~~~~~~~~~~~~~--~~----~~~k~~~~K~~R~~~~eL~d~lF~~Fe~~~  229 (275)
T PF02270_consen  156 YRRLKRERIEKANKPKRTVQQIDEDVSQSYKPVSFHSANSKF--FI----KKKKKQEEKRARMDKNELLDLLFKLFEKHQ  229 (275)
T ss_dssp             ------------------------------------------------------------THHHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHHHHHHhcCCCCeeEEeccccccCCCCcccccccchh--cc----cccccccccceeCCHHHHHHHHHHHHHhCC
Confidence            999999999999999999999998655567764433211110  22    123778999999999999999999999999


Q ss_pred             CcchHHHHHhcCCcHHHHHHHHHHhhHhhcCC
Q 026167          208 NWALKQLVQETDQPAVWFLIFLIPLHHINLRC  239 (242)
Q Consensus       208 yWslK~L~~~t~QPe~yLKEiL~eIa~lnk~G  239 (242)
                      ||+||+|+++|+||++||||||++||+||++|
T Consensus       230 ywslK~L~~~t~QP~~yLKeiL~eIa~~~k~g  261 (275)
T PF02270_consen  230 YWSLKDLRQRTQQPEAYLKEILEEIAVLNKRG  261 (275)
T ss_dssp             -B-HHHHHHH--S-HHHHHHHHHHH--EE--T
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999999999

Transcription initiation factor IIF (TFIIF) is a tetramer of two beta subunits associate with two alpha subunits which interacts directly with RNA polymerase II. The beta subunit of TFIIF is required for recruitment of RNA polymerase II onto the promoter. ; GO: 0005524 ATP binding, 0006367 transcription initiation from RNA polymerase II promoter, 0005674 transcription factor TFIIF complex; PDB: 1F3U_C 2BBY_A 1BBY_A.

>COG5090 TFG2 Transcription initiation factor IIF, small subunit (RAP30) [Transcription]

Probab=100.00  E-value=9.2e-56  Score=379.69  Aligned_cols=217  Identities=28%  Similarity=0.376  Sum_probs=182.6

Q ss_pred             CCcccccCCCCCcEEEEeccHHHHHHHhcccCCCCCcceeEEEEEcCCCCCCCceEEEEecccCCCCCCCCceeeecccc
Q 026167           11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFK   90 (242)
Q Consensus        11 ~~~~Ld~~~a~~~vWLvKVPk~L~e~W~~~~~~~~~~~lG~iri~~~~~~~~~~~~~l~l~~~~~~~~~~Pkey~l~~~~   90 (242)
                      ++.|||+.+.+++|||||||.||+++|.+... +.|..+|++|+..+|.     .++|.|.. ..+.+.+|++|+|.+.+
T Consensus        18 d~~dLdl~~~~~kVWLvkvP~FLaekw~sr~~-~~g~~lg~~r~~~d~a-----~isLlL~n-e~~n~~~P~~ydl~i~~   90 (297)
T COG5090          18 DDADLDLNNRHTKVWLVKVPLFLAEKWLSREA-EIGELLGTKRTSTDPA-----VISLLLSN-EFCNGGFPSSYDLKIKP   90 (297)
T ss_pred             ccccccccccCceEEEEeccHHHHHHHhcchh-hhhhhhceeeecCCcc-----eEEEEecc-CCccCCCCcceeeeecc
Confidence            45599999999999999999999999986654 4577899999987642     45555533 26788999999999988


Q ss_pred             CCc-ceEEEEecC----CCceeEEEEEeeEeEEeecCCChHHHHHHHHHHhhHhhcCCCceEEeccCCCcccccCCCccc
Q 026167           91 DFV-PMSVFSESN----QGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVG  165 (242)
Q Consensus        91 ~~~-~~~VFse~~----~~~~~l~G~V~~e~~~~P~~~~n~~Y~~l~r~R~~~a~~p~R~vq~ld~~~~~~~~p~~~~~~  165 (242)
                      .++ |.|||.|+.    .+.|+|+|+|.|+|.+.|.  .|++|+++++.|..++..|++.||+||...|+.+.|  +..+
T Consensus        91 k~v~n~yVfre~et~t~~k~tavvGtV~hEC~V~P~--vNd~Y~r~~q~r~~~~~~~K~~vq~iD~~~g~~~~~--~~~s  166 (297)
T COG5090          91 KDVNNYYVFRESETSTHEKNTAVVGTVNHECYVTPE--VNDEYLRYKQDRGFKSDSKKSDVQVIDYLKGGKRGE--KFGS  166 (297)
T ss_pred             ccccceEEEecccccccccccceeeeeccceeeccc--ccHHHHHHHHHhhhhhcCccccceeeecccCceecc--Cccc
Confidence            877 689996643    5799999999999999999  568999999999999999999999999888877664  3223


Q ss_pred             ccccCc-ccccccccccccccccccCChhHHHHHHHHhhhhCCCcchHHHHHhcCCcHHHHHHHHHHhhHhhcCC
Q 026167          166 LISSNS-KDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLRC  239 (242)
Q Consensus       166 ~~~~~~-~~~k~~~~~kk~e~K~~Rm~k~eLld~LF~lFe~~~yWslK~L~~~t~QPe~yLKEiL~eIa~lnk~G  239 (242)
                      +.+++. |.++ ..++.+...|+.|||++||+|+||+|||+|+||+||+|+++++||++||||||++||+|||+|
T Consensus       167 ~Rs~~~~fl~~-~r~k~~~~~K~~RlpknEvlD~lFK~Fe~Y~yWtlKgL~e~~~QPea~lkEild~iavLnKkg  240 (297)
T COG5090         167 LRSSTLEFLAR-KRKKMLMDKKRERLPKNEVLDMLFKAFEKYPYWTLKGLAEFCGQPEAFLKEILDDIAVLNKKG  240 (297)
T ss_pred             cccchHHHHHh-cchhhhcchhhcccchhHHHHHHHHHhhcCCchhhhhHHHHhcChHHHHHHHHHHHHhhhccC
Confidence            333333 6543 333346778999999999999999999999999999999999999999999999999999999

>PF05132 RNA_pol_Rpc4: RNA polymerase III RPC4; InterPro: IPR007811 This family comprises a specific subunit for Pol III, the tRNA specific polymerase

Probab=83.22  E-value=5.4  Score=31.93  Aligned_cols=60  Identities=17%  Similarity=0.289  Sum_probs=36.2

Q ss_pred             cceeEEEEEcCCCCCCCceEEEEecccCCCCCCCCceeeeccccC--C-cceEEEE-ecCCCceeEEEEEeeEeEEeec
Q 026167           47 QPVAKVILSLDPLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKD--F-VPMSVFS-ESNQGKVAMEGKVEHKFDMKPH  121 (242)
Q Consensus        47 ~~lG~iri~~~~~~~~~~~~~l~l~~~~~~~~~~Pkey~l~~~~~--~-~~~~VFs-e~~~~~~~l~G~V~~e~~~~P~  121 (242)
                      ..||+|+|.++ |     +++|.+-+         -.|++.....  + +...+.. +...+.....|.|.+++.|.|.
T Consensus        67 G~iGkL~V~kS-G-----kv~l~iG~---------~~~dV~~G~~~~FlQevv~i~~~~~~~~~~~LG~v~~k~v~tPd  130 (131)
T PF05132_consen   67 GQIGKLRVHKS-G-----KVTLKIGG---------VVFDVSPGTQCSFLQEVVAIDEEEEEGECYFLGQVSGKFVVTPD  130 (131)
T ss_pred             CeeEEEEEEeC-C-----cEEEEECC---------EEEEecCCCCCCchheEEEeeccCCCCeEEEeccccceEEEccC
Confidence            47999999964 2     34444332         2244433222  1 1222222 2356889999999999999995

; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006383 transcription from RNA polymerase III promoter, 0005666 DNA-directed RNA polymerase III complex

>PF09734 Tau95: RNA polymerase III transcription factor (TF)IIIC subunit; InterPro: IPR019136 Transcription factor IIIC (TFIIIC) is a multisubunit DNA binding factor that serves as a dynamic platform for assembly of pre-initiation complexes on class III genes

Probab=82.20  E-value=1.6  Score=39.89  Aligned_cols=50  Identities=20%  Similarity=0.149  Sum_probs=44.0

Q ss_pred             CChhHHHHHHHHhhhhCCCcchHHHHHhcCC--cHHHHHHHHHHhhHhhcCC
Q 026167          190 RDRGELEDIMFKLFERQPNWALKQLVQETDQ--PAVWFLIFLIPLHHINLRC  239 (242)
Q Consensus       190 m~k~eLld~LF~lFe~~~yWslK~L~~~t~Q--Pe~yLKEiL~eIa~lnk~G  239 (242)
                      -.-.+++..|=+|||+.+-|+-++|...+..  -..+||.+|--+|=+=+.|
T Consensus       231 ~~~~~~~~~l~~lFeeRPIW~r~~L~~~~~~~~~~~~~k~~l~~v~Y~f~~G  282 (310)
T PF09734_consen  231 PVLQELIQELKKLFEERPIWTRRALLNHLPKSGSQSKLKRALPYVAYYFKNG  282 (310)
T ss_pred             hhHHHHHHHHHHHHhcCCccCHHHHHHhhhhcccHHHHHHHHHhhEEEEecC
Confidence            3447889999999999999999999999999  5889999999998776665

This entry represents subunit 5 (also known as the tau 95 subunit) which holds a key position in TFIIIC, exerting both upstream and downstream influence on the TFIIIC-DNA complex by rendering the complex more stable []. Once bound to tDNA-intragenic promoter elements, TFIIIC directs the assembly of TFIIIB on the DNA, which in turn recruits the RNA polymerase III (pol III) and activates multiple rounds of transcription.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	242
1f3u_A	118	Transcription initiation factor IIF, beta subunit;	6e-25
1bby_A	69	RAP30; average structure transcription regulation,	7e-11

>1f3u_A Transcription initiation factor IIF, beta subunit; general transcription initiation and elongation factor, RNA polymerase II; 1.70A {Homo sapiens} SCOP: b.65.1.1 Length = 118

 Score = 94.3 bits (234), Expect = 6e-25
 Identities = 25/119 (21%), Positives = 57/119 (47%), Gaps = 12/119 (10%)

Query: 10  NGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM- 68
            G+ +L  AK +  VWL+K P  +++ W   +   +   V K+ ++    +++ + FT+ 
Sbjct: 3   RGELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGE---VGKLRIAKTQGRTE-VSFTLN 58

Query: 69  ------ETTAVSNDSLNRPKSYSLNMFKDFV-PMSVFSESNQGKVAMEGKVEHKFDMKP 120
                         S++ P+ +   +       ++VF+ES+  K+++EG V  + + +P
Sbjct: 59  EDLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRP 117

>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A Length = 69

 Score = 55.5 bits (134), Expect = 7e-11
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 187 RTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVW 224
           R R D+  + D++F  FE+   + LK LV  T QP V+
Sbjct: 1   RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVY 38

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	242
1f3u_A	118	Transcription initiation factor IIF, beta subunit;	99.97
1bby_A	69	RAP30; average structure transcription regulation,	99.94

>1f3u_A Transcription initiation factor IIF, beta subunit; general transcription initiation and elongation factor, RNA polymerase II; 1.70A {Homo sapiens} SCOP: b.65.1.1

Probab=99.97  E-value=1.1e-31  Score=211.80  Aligned_cols=108  Identities=23%  Similarity=0.455  Sum_probs=88.0

Q ss_pred             CCCcccccCCCCCcEEEEeccHHHHHHHhcccCCCCCcceeEEEEEcCCCCCCCceEEEE--eccc-----CCCCCCCCc
Q 026167           10 NGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTME--TTAV-----SNDSLNRPK   82 (242)
Q Consensus        10 ~~~~~Ld~~~a~~~vWLvKVPk~L~e~W~~~~~~~~~~~lG~iri~~~~~~~~~~~~~l~--l~~~-----~~~~~~~Pk   82 (242)
                      .++++||+++++++|||||||+|||++|++..   ++++||+|+|+.+++ ..+++|+|.  +.+.     .+++.++|+
T Consensus         3 ~~~~dld~~~~~~~VWLvKvPk~L~e~W~~~~---~~~~vGkvri~~~~g-~~~v~l~L~~~~~~~~~~~~~~~~~~iPk   78 (118)
T 1f3u_A            3 RGELDLTGAKQNTGVWLVKVPKYLSQQWAKAS---GRGEVGKLRIAKTQG-RTEVSFTLNEDLANIHDIGGKPASVSAPR   78 (118)
T ss_dssp             TTBEECHHHHTTCEEEEEEEEHHHHHHHTTCC---TTCEEEEEEEEEETT-EEEEEEEECHHHHTCCCTTCCCSTTCSCC
T ss_pred             cccccccccCCCceEEEEECCHHHHHHHHhCC---CCCceEEEEEecCCC-ceeEEEEeChhHhhhccccccccccCCCh
Confidence            46788999999999999999999999998654   236899999998754 333444443  1110     124678999


Q ss_pred             eeeecccc-CCcceEEEEecCCCceeEEEEEeeEeEEeec
Q 026167           83 SYSLNMFK-DFVPMSVFSESNQGKVAMEGKVEHKFDMKPH  121 (242)
Q Consensus        83 ey~l~~~~-~~~~~~VFse~~~~~~~l~G~V~~e~~~~P~  121 (242)
                      +|+|.|++ ..+|||||||+++++++|||+|+|+|+|+|.
T Consensus        79 eY~l~~~~~~~~~~~VFSE~~~~~~a~EG~V~~k~d~rP~  118 (118)
T 1f3u_A           79 EHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPA  118 (118)
T ss_dssp             EEEEEEECCTTSEEEEEEEETTCCEEEEEEEEEEEEECCC
T ss_pred             hceEEeeccCCceeEEEeccCCCcEEEEEEEEEEEEeecC
Confidence            99999998 5789999999999999999999999999994

>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A

Probab=99.94  E-value=2.8e-28  Score=174.24  Aligned_cols=54  Identities=31%  Similarity=0.536  Sum_probs=52.7

Q ss_pred             cccCChhHHHHHHHHhhhhCCCcchHHHHHhcCCcHHHHHHHHHHhhHhhcCCC
Q 026167          187 RTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLRCF  240 (242)
Q Consensus       187 ~~Rm~k~eLld~LF~lFe~~~yWslK~L~~~t~QPe~yLKEiL~eIa~lnk~G~  240 (242)
                      ++|||+++|+|+||+|||+|+||+||+|+++|+||++||||||++||+||++|-
T Consensus         1 r~R~~~~~l~d~lF~~Fek~~yw~lK~L~~~t~QP~~yLKeiL~~Ia~~~k~g~   54 (69)
T 1bby_A            1 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGI   54 (69)
T ss_dssp             CTHHHHHHHHHHHHHHHHHCSCBCHHHHHHHCCSCHHHHHHHHHHHCCCBCCTT
T ss_pred             CCcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHcCcHHHHHHHHHHHHHHHcCCC
Confidence            589999999999999999999999999999999999999999999999999993

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	242
d1f3ua_	118	b.65.1.1 (A:) TFIIF beta subunit, Rap30 {Human (Ho	2e-32
d2bbya_	69	a.4.5.15 (A:) DNA-binding domain from rap30 {Human	1e-13

>d1f3ua_ b.65.1.1 (A:) TFIIF beta subunit, Rap30 {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: triple barrel
superfamily: Rap30/74 interaction domains
family: Rap30/74 interaction domains
domain: TFIIF beta subunit, Rap30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 2e-32
 Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 14/120 (11%)

Query: 10  NGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDP--------LQS 61
            G+ +L  AK +  VWL+K P  +++ W   +       V K+ ++           L  
Sbjct: 3   RGELDLTGAKQNTGVWLVKVPKYLSQQWAKAS---GRGEVGKLRIAKTQGRTEVSFTLNE 59

Query: 62  DSMQFTMETTAVSNDSLNRPKSYSLNMFKDFV-PMSVFSESNQGKVAMEGKVEHKFDMKP 120
           D              S++ P+ +   +       ++VF+ES+  K+++EG V  + + +P
Sbjct: 60  DLANIHDIGG--KPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRP 117

>d2bbya_ a.4.5.15 (A:) DNA-binding domain from rap30 {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DNA-binding domain from rap30
domain: DNA-binding domain from rap30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (151), Expect = 1e-13
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 187 RTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVW 224
           R R D+  + D++F  FE+   + LK LV  T QP V+
Sbjct: 1   RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVY 38

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	242
d1f3ua_	118	TFIIF beta subunit, Rap30 {Human (Homo sapiens) [T	99.97
d2bbya_	69	DNA-binding domain from rap30 {Human (Homo sapiens	99.94
d1lvaa3	64	C-terminal fragment of elongation factor SelB {Moo	80.46

>d1f3ua_ b.65.1.1 (A:) TFIIF beta subunit, Rap30 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: triple barrel
superfamily: Rap30/74 interaction domains
family: Rap30/74 interaction domains
domain: TFIIF beta subunit, Rap30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.7e-33  Score=216.08  Aligned_cols=109  Identities=23%  Similarity=0.423  Sum_probs=90.9

Q ss_pred             CCCCcccccCCCCCcEEEEeccHHHHHHHhcccCCCCCcceeEEEEEcCCCCCCCceEEEEe-------cccCCCCCCCC
Q 026167            9 GNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMET-------TAVSNDSLNRP   81 (242)
Q Consensus         9 ~~~~~~Ld~~~a~~~vWLvKVPk~L~e~W~~~~~~~~~~~lG~iri~~~~~~~~~~~~~l~l-------~~~~~~~~~~P   81 (242)
                      +.++.|||+++++++|||||||+|||++|+++.+   ..+||+|||.++++ .++++|.|.-       ....+++.+||
T Consensus         2 ~~~~ldl~~a~~~~~VWLvKvPkyls~~W~k~~~---~~~vGklri~~~~~-k~ev~l~l~~~~~~~~~~~~~~~~~~iP   77 (118)
T d1f3ua_           2 ERGELDLTGAKQNTGVWLVKVPKYLSQQWAKASG---RGEVGKLRIAKTQG-RTEVSFTLNEDLANIHDIGGKPASVSAP   77 (118)
T ss_dssp             CTTBEECHHHHTTCEEEEEEEEHHHHHHHTTCCT---TCEEEEEEEEEETT-EEEEEEEECHHHHTCCCTTCCCSTTCSC
T ss_pred             CccccccccccCCceEEEEECCHHHHHHHhhCCC---CCcceEEEeccCCC-CcceEEecCchHhhhhccccCCCcCCCC
Confidence            5678889999999999999999999999996542   35899999998875 4556666631       01124567899


Q ss_pred             ceeeeccccCC-cceEEEEecCCCceeEEEEEeeEeEEeec
Q 026167           82 KSYSLNMFKDF-VPMSVFSESNQGKVAMEGKVEHKFDMKPH  121 (242)
Q Consensus        82 key~l~~~~~~-~~~~VFse~~~~~~~l~G~V~~e~~~~P~  121 (242)
                      ++|+|.|++.. +|||||||.+++++++||+|+|+|+|||.
T Consensus        78 key~l~~~~~~~q~~~VFSe~~~~k~~~EG~V~~k~d~RPa  118 (118)
T d1f3ua_          78 REHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPA  118 (118)
T ss_dssp             CEEEEEEECCTTSEEEEEEEETTCCEEEEEEEEEEEEECCC
T ss_pred             hhhcEecccccCCceEEEEecCCCcEEEEEEEEEEeecCCC
Confidence            99999999986 59999999999999999999999999995

>d2bbya_ a.4.5.15 (A:) DNA-binding domain from rap30 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DNA-binding domain from rap30
domain: DNA-binding domain from rap30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.6e-29  Score=174.91  Aligned_cols=54  Identities=31%  Similarity=0.536  Sum_probs=52.8

Q ss_pred             cccCChhHHHHHHHHhhhhCCCcchHHHHHhcCCcHHHHHHHHHHhhHhhcCCC
Q 026167          187 RTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLRCF  240 (242)
Q Consensus       187 ~~Rm~k~eLld~LF~lFe~~~yWslK~L~~~t~QPe~yLKEiL~eIa~lnk~G~  240 (242)
                      |+|||+++|+|+||+|||+|+|||||+|+++|+||++||||||++||+||++|-
T Consensus         1 r~R~~~~~l~d~lF~~Fek~~ywsiK~L~~~t~QP~~yLKeiL~eIa~~~~~g~   54 (69)
T d2bbya_           1 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGI   54 (69)
T ss_dssp             CTHHHHHHHHHHHHHHHHHCSCBCHHHHHHHCCSCHHHHHHHHHHHCCEECCTT
T ss_pred             CCccCHHHHHHHHHHHHhhcCCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCC
Confidence            689999999999999999999999999999999999999999999999999994

>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: C-terminal fragment of elongation factor SelB
domain: C-terminal fragment of elongation factor SelB
species: Moorella thermoacetica [TaxId: 1525]

Probab=80.46  E-value=1.1  Score=28.80  Aligned_cols=43  Identities=9%  Similarity=-0.055  Sum_probs=37.5

Q ss_pred             hhHHHHHHHHhhhhCCC--cchHHHHHhcCCcHHHHHHHHHHhhH
Q 026167          192 RGELEDIMFKLFERQPN--WALKQLVQETDQPAVWFLIFLIPLHH  234 (242)
Q Consensus       192 k~eLld~LF~lFe~~~y--WslK~L~~~t~QPe~yLKEiL~eIa~  234 (242)
                      ...|...|-.+|.+..+  |++|+|...++.|+.=++++|.-.|.
T Consensus         5 q~~l~~~I~~~~~~~g~~PP~vrdl~~~l~~~e~~~~~lL~~l~~   49 (64)
T d1lvaa3           5 QKKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVR   49 (64)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCcHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            46788999999987755  99999999999999999999987664