Citrus Sinensis ID: 026180

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240--
Protein Sequence
MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLSKQCDNSATSPPEEDPHSESLFAFGWKTVLIGYASGTVIGVVLGHIFSTRKYEWLAKTFRLQPKSNGRRRVGRHRQRM
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccEEEEEEEEEEEccEEEEEEccccEEEEEcccccccccccHHHHccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEHHHHHHHHHHHHHccccHHHHHHHccccccccEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHcccccccEEEEcccccccccccccccccHHcccccEEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccccccHHHccHHHcccccEEEcccccccccccccccccccccccccccccEEEEEEEccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mkdvnannltylqdpllgpvrypaltyyGFSYYSLtlsnkgtelEYEKLSNLITAIIlsnnsfvgeipTSIANLKGLrtlnlstnslqghipptlgNLIVLEsldlsnnklsgqipqqlgelttlevfdvsdnlltgpiprgkqfntfgkgsfdgnpglcgqplskqcdnsatsppeedphseslfafGWKTVLIGYASGTVIGVVLGHIFSTRKYEWLAKTFrlqpksngrrrvgrhrqrm
Flexible Loop (DISEMBL)
mkdvnannltylqdpllgPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLSKQCDNSATSPPEEDPHSESLFAFGWKTVLIGYASGTVIGVVLGHIFSTRKYEWlaktfrlqpksngrrrvgrhrqrm
Low Complexity Region (SEG)
MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLSKQCDNSATSPPEEDPHSESLFAFGWKTVLIGYASGTVIGVVLGHIFSTRKYEWLAKTFRLQPKSNGrrrvgrhrqrM
Disordered region (IsUnstruct)
*******NLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFG***********************************LFAFGWKTVLIGYASGTVIGVVLGHIFSTRKYEWLAKTFRL*****************
Disordered Region (DISOPRED)
MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQP*************************GWKTVLIGYASGTVIGVVLGHIFSTRKYEWLAKTFRLQPKSNGRRRVGRH****
Disordered Region (DISEMBL)
MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLS****************SESLFAFGWKTVLIGYASGTVIGVVLGHIFSTRKYEWLAKTFRLQPK**************
Disordered Region (DISPRO)
MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLSKQC*****************FAFGWKTVLIGYASGTVIGVVLGHIFSTRKYEWLAKTFRLQPKSNGRR*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLSKQCDNSATSPPEEDPHSESLFAFGWKTVLIGYASGTVIGVVLGHIFSTRKYEWLAKTFRLQPKSNGRRRVGRHRQRM
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	242	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.822	0.234	0.421	4e-34
Q9C7S5	1095	Tyrosine-sulfated glycope	no	no	0.504	0.111	0.477	8e-25
Q9SHI3	729	Receptor-like protein 2 O	no	no	0.657	0.218	0.414	7e-23
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.706	0.167	0.382	1e-21
Q9C9N5	685	Probable inactive leucine	no	no	0.640	0.226	0.388	1e-19
C0LGF4	591	LRR receptor-like serine/	no	no	0.520	0.213	0.403	2e-19
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.466	0.094	0.482	2e-19
C0LGE4	882	Probable LRR receptor-lik	no	no	0.528	0.145	0.423	4e-19
Q9FRS6	1029	Leucine-rich repeat recep	no	no	0.657	0.154	0.365	1e-18
C0LGP9	784	Probable leucine-rich rep	no	no	0.491	0.151	0.419	2e-18

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  144 bits (364), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 88/209 (42%), Positives = 114/209 (54%), Gaps = 10/209 (4%)

Query: 28  YGFSYY-SLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNS 86
           Y  SYY  + + NKG ++ +E++     AI  S N   G IP S+  LK LR LNLS N+
Sbjct: 634 YADSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNA 693

Query: 87  LQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFN 146
               IP  L NL  LE+LD+S NKLSGQIPQ L  L+ L   + S NLL GP+PRG QF 
Sbjct: 694 FTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQ 753

Query: 147 TFGKGSFDGNPGLCGQPLSKQC-DNSATSP----PEEDPHSESLFAFGWKTVLIGYASGT 201
                SF  NPGL G  L   C D  A +P    PE+   +E    F W    I Y  G 
Sbjct: 754 RQKCSSFLDNPGLYG--LEDICRDTGALNPTSQLPEDLSEAEE-NMFNWVAAAIAYGPGV 810

Query: 202 VIGVVLGHIFSTRKYEWLAKTF-RLQPKS 229
           + G+V+GH +++  +EW  + F R Q K+
Sbjct: 811 LCGLVIGHFYTSHNHEWFTEKFGRKQHKA 839

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7S5|PSYR1_ARATH Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1

 Score =  114 bits (284), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 63/132 (47%), Positives = 79/132 (59%)

Query: 38  SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGN 97
           +N  T  +Y +LS+L   I +  N+  G IP  +  LK L  L L  N+  G IP  L N
Sbjct: 568 NNVTTNQQYNQLSSLPPTIYIKRNNLTGTIPVEVGQLKVLHILELLGNNFSGSIPDELSN 627

Query: 98  LIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNP 157
           L  LE LDLSNN LSG+IP  L  L  L  F+V++N L+GPIP G QF+TF K +F+GNP
Sbjct: 628 LTNLERLDLSNNNLSGRIPWSLTGLHFLSYFNVANNTLSGPIPTGTQFDTFPKANFEGNP 687

Query: 158 GLCGQPLSKQCD 169
            LCG  L   CD
Sbjct: 688 LLCGGVLLTSCD 699

Tyrosine-sulfated glycopeptide receptor with a serine/threonine-protein kinase activity. Regulates, in response to tyrosine-sulfated glycopeptide binding, a signaling cascade involved in cellular proliferation and plant growth. Not involved in PSK perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1

 Score =  107 bits (267), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/169 (41%), Positives = 87/169 (51%), Gaps = 10/169 (5%)

Query: 38  SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGN 97
           +N  T  +Y KL +    I +  N+  G IP  +  LK L  L L  N+L G IP  L N
Sbjct: 563 NNVTTNQQYNKLYSFPPTIYIRRNNLTGSIPVEVGQLKVLHILELLGNNLSGSIPDELSN 622

Query: 98  LIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNP 157
           L  LE LDLSNN LSG IP  L  L  L  F+V++N L GPIP   QF+TF K +F+GNP
Sbjct: 623 LTNLERLDLSNNNLSGSIPWSLTNLNFLSYFNVANNSLEGPIPSEGQFDTFPKANFEGNP 682

Query: 158 GLCGQPLSKQCDNSATSPPEEDPHSESLFAFGWKTVLIGYASGTVIGVV 206
            LCG  L   C    T   E D  +        +T L+G A G  +  V
Sbjct: 683 LLCGGVLLTSCK--PTRAKENDELN--------RTFLMGIAIGYFLSFV 721

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score =  103 bits (257), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 94/178 (52%), Gaps = 7/178 (3%)

Query: 30  FSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQG 89
           F ++    +N G  L+Y + S+    I LS NS  G I     +L+ L  LNL  N+L G
Sbjct: 513 FPFFKKKNTNAGG-LQYNQPSSFPPMIDLSYNSLNGSIWPEFGDLRQLHVLNLKNNNLSG 571

Query: 90  HIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFG 149
           +IP  L  +  LE LDLS+N LSG IP  L +L+ L  F V+ N L+GPIP G QF TF 
Sbjct: 572 NIPANLSGMTSLEVLDLSHNNLSGNIPPSLVKLSFLSTFSVAYNKLSGPIPTGVQFQTFP 631

Query: 150 KGSFDGNPGLCGQPLSKQCDNSATSPPEEDPHSESLFAFGWKTVLIGYASGTVIGVVL 207
             SF+GN GLCG+        S     ++ PH  ++ +      ++  A GT +G V 
Sbjct: 632 NSSFEGNQGLCGE------HASPCHITDQSPHGSAVKSKKNIRKIVAVAVGTGLGTVF 683

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9N5|Y1668_ARATH Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 OS=Arabidopsis thaliana GN=At1g66830 PE=1 SV=1

 Score = 96.7 bits (239), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 85/157 (54%), Gaps = 2/157 (1%)

Query: 53  ITAIILSNNSFVGEIPTSI-ANLKGLRTLNLSTNSLQGHIPPTLGNLIVLE-SLDLSNNK 110
           +  ++LS NSF G++PT + +NL  LRTLNLS N L G IP  +G+L  L+ +LDLS+N 
Sbjct: 164 LKTLVLSKNSFSGDLPTGLGSNLVHLRTLNLSFNRLTGTIPEDVGSLENLKGTLDLSHNF 223

Query: 111 LSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLSKQCDN 170
            SG IP  LG L  L   D+S N L+GPIP+       G  +F GNP LCG P+   C  
Sbjct: 224 FSGMIPTSLGNLPELLYVDLSYNNLSGPIPKFNVLLNAGPNAFQGNPFLCGLPIKISCST 283

Query: 171 SATSPPEEDPHSESLFAFGWKTVLIGYASGTVIGVVL 207
             T       ++          +++    GTV G++ 
Sbjct: 284 RNTQVVPSQLYTRRANHHSRLCIILTATGGTVAGIIF 320

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGF4|FEI1_ARATH LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 75/129 (58%), Gaps = 3/129 (2%)

Query: 56  IILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQI 115
           ++L NN+  G IPT++ N   L  ++L +N   G IP  +G+L  L+ LD+S+N LSG I
Sbjct: 103 LMLHNNALYGAIPTALGNCTALEEIHLQSNYFTGPIPAEMGDLPGLQKLDMSSNTLSGPI 162

Query: 116 PQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLSKQCDNSATSP 175
           P  LG+L  L  F+VS+N L G IP     + F K SF GN  LCG+ +   C + + +P
Sbjct: 163 PASLGQLKKLSNFNVSNNFLVGQIPSDGVLSGFSKNSFIGNLNLCGKHVDVVCQDDSGNP 222

Query: 176 PEEDPHSES 184
                HS+S
Sbjct: 223 SS---HSQS 228

Involved in the signaling pathway that regulates cell wall function, including cellulose biosynthesis, likely via an 1-aminocyclopropane-1-carboxylic acid (ACC)-mediated signal (a precursor of ethylene).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 68/114 (59%), Gaps = 1/114 (0%)

Query: 58  LSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQ 117
           +S N   G IP  I ++  L  LNL  N + G IP  +G+L  L  LDLS+NKL G+IPQ
Sbjct: 661 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 720

Query: 118 QLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLSKQCDNS 171
            +  LT L   D+S+N L+GPIP   QF TF    F  NPGLCG PL + CD S
Sbjct: 721 AMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR-CDPS 773

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGE4|Y1124_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=1 SV=1

 Score = 95.1 bits (235), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/130 (42%), Positives = 73/130 (56%), Gaps = 2/130 (1%)

Query: 47  EKLSN--LITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESL 104
           E +SN  ++  + +S N   G+I   + NL  ++ L+L  N L G IPP LGNL  ++ L
Sbjct: 374 EDISNCRVLLELDVSGNDLEGKISKKLLNLTNIKILDLHRNRLNGSIPPELGNLSKVQFL 433

Query: 105 DLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPL 164
           DLS N LSG IP  LG L TL  F+VS N L+G IP       FG  +F  NP LCG PL
Sbjct: 434 DLSQNSLSGPIPSSLGSLNTLTHFNVSYNNLSGVIPPVPMIQAFGSSAFSNNPFLCGDPL 493

Query: 165 SKQCDNSATS 174
              C++   +
Sbjct: 494 VTPCNSRGAA 503

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 82/164 (50%), Gaps = 5/164 (3%)

Query: 53  ITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLS 112
           ++ + LS N F G IP  IA+ + L +LNL +N L G IP  L  + +L  LDLSNN L+
Sbjct: 510 LSVLDLSFNHFSGGIPERIASFEKLVSLNLKSNQLVGEIPKALAGMHMLAVLDLSNNSLT 569

Query: 113 GQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLSKQCDNSA 172
           G IP  LG   TLE+ +VS N L GPIP    F         GN GLCG  L     + A
Sbjct: 570 GNIPADLGASPTLEMLNVSFNKLDGPIPSNMLFAAIDPKDLVGNNGLCGGVLPPCSKSLA 629

Query: 173 TSPPEEDPHSESLFAFGWKTVLIGYASGTVIGVVLGHIFSTRKY 216
            S    +P    +        + G+  GT + V +G +F   ++
Sbjct: 630 LSAKGRNPGRIHV-----NHAVFGFIVGTSVIVAMGMMFLAGRW 668

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGP9|IMK3_ARATH Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana GN=IMK3 PE=1 SV=1

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/124 (41%), Positives = 77/124 (62%), Gaps = 5/124 (4%)

Query: 58  LSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQ 117
            S+N   G +P+ ++ L  LR +++S NS+ GHIP TLGN+  L  LDLS NKL+G+IP 
Sbjct: 277 FSHNRIRGTLPSELSKLTKLRKMDISGNSVSGHIPETLGNISSLIHLDLSQNKLTGEIPI 336

Query: 118 QLGELTTLEVFDVSDNLLTGPIPR--GKQFNTFGKGSFDGNPGLCGQPLSKQCDNSATSP 175
            + +L +L  F+VS N L+GP+P    ++FN+    SF GN  LCG  +S  C    +  
Sbjct: 337 SISDLESLNFFNVSYNNLSGPVPTLLSQKFNS---SSFVGNSLLCGYSVSTPCPTLPSPS 393

Query: 176 PEED 179
           PE++
Sbjct: 394 PEKE 397

Can phosphorylate AGL24.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
224140511	894	predicted protein [Populus trichocarpa]	0.979	0.265	0.493	2e-55
225447578	1946	PREDICTED: uncharacterized protein LOC10	0.917	0.114	0.517	4e-55
359485822	993	PREDICTED: receptor-like protein 12-like	0.975	0.237	0.514	6e-55
224140505	993	predicted protein [Populus trichocarpa]	0.975	0.237	0.497	2e-54
297745044	813	unnamed protein product [Vitis vinifera]	0.938	0.279	0.489	7e-54
224140509	961	predicted protein [Populus trichocarpa]	0.987	0.248	0.493	8e-54
224140513	947	predicted protein [Populus trichocarpa]	0.983	0.251	0.491	2e-53
147794486	1924	hypothetical protein VITISV_000631 [Viti	0.917	0.115	0.513	3e-53
147782974	1719	hypothetical protein VITISV_036826 [Viti	0.942	0.132	0.487	6e-53
255548694	984	serine/threonine-protein kinase bri1, pu	0.942	0.231	0.479	2e-52

>gi|224140511|ref|XP_002323626.1| predicted protein [Populus trichocarpa] gi|222868256|gb|EEF05387.1| predicted protein [Populus trichocarpa]

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 120/243 (49%), Positives = 157/243 (64%), Gaps = 6/243 (2%)

Query: 1   MKDVNANNLTYLQ-DPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILS 59
           MK+V+   L Y+Q D  +   R      Y    YS+T++NKG    YEK+ + ++AI LS
Sbjct: 654 MKNVHNEPLIYMQADTSIDISRASVTNPYP---YSMTMTNKGVMTLYEKIQDSLSAIDLS 710

Query: 60  NNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQL 119
           +N F G IP  + +LK L  LNLS N L G IPP+L NL  LE+LDLS+NKLSG+IP QL
Sbjct: 711 SNGFEGGIPEVLGDLKALHLLNLSNNFLSGRIPPSLSNLKELEALDLSHNKLSGEIPVQL 770

Query: 120 GELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLSKQCDNSAT--SPPE 177
            +LT LE+F+VS N L+GPIPRG QF  F   SFD N GLCG+PLSK+C N       PE
Sbjct: 771 AQLTFLEIFNVSHNFLSGPIPRGNQFGAFDSTSFDANSGLCGEPLSKKCGNDVDPLPAPE 830

Query: 178 EDPHSESLFAFGWKTVLIGYASGTVIGVVLGHIFSTRKYEWLAKTFRLQPKSNGRRRVGR 237
           ED  S     FGWK V+IGYA+G +IGV+LG + +TRKYEW+ K +  + ++ G+    R
Sbjct: 831 EDGGSGYPLEFGWKVVVIGYATGLLIGVILGCVMNTRKYEWVVKNYFARWQNKGQHLKNR 890

Query: 238 HRQ 240
            R+
Sbjct: 891 LRR 893

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447578|ref|XP_002270154.1| PREDICTED: uncharacterized protein LOC100264911 [Vitis vinifera]

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 118/228 (51%), Positives = 149/228 (65%), Gaps = 6/228 (2%)

Query: 1    MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSN 60
            M  V+  N +Y+Q  + G V       Y    YS+T++NKG E  Y K+     AI LS+
Sbjct: 1713 MSRVDEENFSYMQS-MTGFVLIRTYRLYENYNYSMTMTNKGMERVYPKIPRSFKAIDLSS 1771

Query: 61   NSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLG 120
            N F+GEIP SI  L+GL  LN+S+NSL GHIP  LGNL  LE+LDLS N LSG+IPQQL 
Sbjct: 1772 NKFIGEIPKSIGKLRGLHLLNISSNSLTGHIPSFLGNLAQLEALDLSQNNLSGEIPQQLK 1831

Query: 121  ELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLSKQCDNSATS--PPEE 178
             +T LE F+VS N L GPIP+GKQFNTF   S++GNPGLCG PLSK+C+NS ++  PP  
Sbjct: 1832 GMTFLEFFNVSHNHLMGPIPQGKQFNTFQNDSYEGNPGLCGNPLSKECENSKSTAPPPPT 1891

Query: 179  DPHS---ESLFAFGWKTVLIGYASGTVIGVVLGHIFSTRKYEWLAKTF 223
            D H    ES        VL+GY SG V+G+ +G+  +TRK+EW  KTF
Sbjct: 1892 DKHGGDLESGRKVELMIVLMGYGSGLVVGMAIGYTLTTRKHEWFVKTF 1939

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485822|ref|XP_003633342.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 124/241 (51%), Positives = 154/241 (63%), Gaps = 5/241 (2%)

Query: 1   MKDVNANNLTYLQ-DPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILS 59
           M+ V+A NLTY+Q D      +Y     Y FS    T++NKG   EYE + +++ AI LS
Sbjct: 755 MRIVDAENLTYIQVDEEFEVPQYSWEEPYPFST---TMTNKGMTREYELIPDILIAIDLS 811

Query: 60  NNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQL 119
           +N F GEIP SI N  GLR LNLS N+L G IP +L NL +LE+LDLS NKLS +IPQQL
Sbjct: 812 SNRFHGEIPESIGNPNGLRWLNLSNNALIGAIPTSLANLTLLEALDLSQNKLSREIPQQL 871

Query: 120 GELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLSKQCDNSATSPPEED 179
            +LT L  F+VS N LTGPIP+GKQF TF + SFDGNPGLCG PLS+ C +S  SPP   
Sbjct: 872 VQLTFLAFFNVSHNHLTGPIPQGKQFATFSRASFDGNPGLCGSPLSRACGSSEQSPPTPS 931

Query: 180 PHSE-SLFAFGWKTVLIGYASGTVIGVVLGHIFSTRKYEWLAKTFRLQPKSNGRRRVGRH 238
              + S   F WK VL+G  SG VIGV +G+  ++ K+EW  KTF  Q     R+    H
Sbjct: 932 SSKQGSTSEFDWKFVLMGCGSGLVIGVSIGYCLTSWKHEWFVKTFGKQHTKWTRKERRGH 991

Query: 239 R 239
           R
Sbjct: 992 R 992

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140505|ref|XP_002323623.1| predicted protein [Populus trichocarpa] gi|222868253|gb|EEF05384.1| predicted protein [Populus trichocarpa]

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 121/243 (49%), Positives = 160/243 (65%), Gaps = 7/243 (2%)

Query: 1   MKDVNANNLTYLQDPLLGPVRYPALTY-YGFSYYSLTLSNKGTELEYEKLSNLITAIILS 59
           MK+V   +L Y+Q  +   +   ++T  Y FS   +T++NKG    YEK+ + ++AI LS
Sbjct: 753 MKNVRNEHLIYMQVGISYQIFGDSMTIPYQFS---MTITNKGVMRLYEKIQDSLSAIDLS 809

Query: 60  NNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQL 119
           +N F G IP  + +LK L  LNLS N L G IPP+L NL  LE+LDLS NKLSG+IP +L
Sbjct: 810 SNGFEGGIPEVLGDLKELHLLNLSNNFLSGGIPPSLSNLKELEALDLSQNKLSGEIPVKL 869

Query: 120 GELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLSKQCDNSATSPP--E 177
            +LT LEVF+VS N L+GPIPRG QF TF   SFD NPGLCG+PLSK+C N   S P  +
Sbjct: 870 AQLTFLEVFNVSHNFLSGPIPRGNQFGTFENTSFDANPGLCGEPLSKECGNDEDSLPAAK 929

Query: 178 EDPHSESLFAFGWKTVLIGYASGTVIGVVLGHIFSTRKYEWLAKTFRLQPKSNGRRRVGR 237
           ED  S     FGWK V++GYASG V GV++G + +TRKYEW+ K +  + ++ G+    R
Sbjct: 930 EDEGSGYPLEFGWKVVVVGYASGVVNGVIIGCVMNTRKYEWVVKNYFARRQNKGQNLKTR 989

Query: 238 -HR 239
            HR
Sbjct: 990 LHR 992

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745044|emb|CBI38636.3| unnamed protein product [Vitis vinifera]

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 118/241 (48%), Positives = 154/241 (63%), Gaps = 14/241 (5%)

Query: 6   ANNLTYLQDPLLGPVRYPALTYYGFSY-----YSLTLSNKGTELEYEKLSNLITAIILSN 60
           ANNL Y+Q        +P     G+S+     YS+ ++NKG +  YE++ ++  AI  S 
Sbjct: 533 ANNLRYMQ-------THPKFQIPGYSWIDSYMYSMRMTNKGMQRFYEQIPDIFIAIDFSG 585

Query: 61  NSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLG 120
           N+F G+IPTSI NLKGL  LNL  N+L GHI  +LG+L  LESLDLS N+LSG+IP QL 
Sbjct: 586 NNFKGQIPTSIGNLKGLHLLNLGGNNLTGHISSSLGDLTQLESLDLSQNQLSGEIPLQLT 645

Query: 121 ELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLSKQCDNSATSPPEEDP 180
            +T L  F+VS+N L+GPIP+GKQF TF   SFDGNPGLCG PLS+ C +S  SPP    
Sbjct: 646 RITFLAFFNVSNNHLSGPIPQGKQFATFSSASFDGNPGLCGSPLSRACGSSEASPPTSSS 705

Query: 181 HSESLFA-FGWKTVLIGYASGTVIGVVLGHIFSTRKYEWLAKTF-RLQPKSNGRRRVGRH 238
             +   + F WK VL+GY SG VIGV +G+  ++ K+EW  KTF + Q K   + R G  
Sbjct: 706 SKQGSTSEFDWKFVLMGYGSGLVIGVSIGYCLTSWKHEWFVKTFGKRQRKWTRKERRGAQ 765

Query: 239 R 239
           R
Sbjct: 766 R 766

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140509|ref|XP_002323625.1| predicted protein [Populus trichocarpa] gi|222868255|gb|EEF05386.1| predicted protein [Populus trichocarpa]

 Score =  216 bits (549), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 121/245 (49%), Positives = 155/245 (63%), Gaps = 6/245 (2%)

Query: 1   MKDVNANNLTYLQDPL-LGPVRYPALTYYGFSY---YSLTLSNKGTELEYEKLSNLITAI 56
            ++ +A    Y + PL +  V    L  YG +Y   YS+T++NKG    YEK+   +TAI
Sbjct: 716 FRNWSAMKTIYKERPLYMQVVSSFQLPRYGMTYHFDYSMTMTNKGVMTLYEKIQEFLTAI 775

Query: 57  ILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIP 116
            LS+N F G IP ++ +LK L  LNLS N L G IPP+L NL  LE+LDLS NKLSG+IP
Sbjct: 776 DLSSNRFEGGIPDALGDLKELYLLNLSNNFLTGRIPPSLSNLKGLEALDLSQNKLSGEIP 835

Query: 117 QQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLSKQCDNSATS-- 174
            QL +LT L VF+VS NLL+GPIPRG QF TF   SFD + GLCG+PLSK+C +   S  
Sbjct: 836 VQLAQLTFLAVFNVSHNLLSGPIPRGNQFETFDSTSFDADSGLCGKPLSKKCGSGEDSLP 895

Query: 175 PPEEDPHSESLFAFGWKTVLIGYASGTVIGVVLGHIFSTRKYEWLAKTFRLQPKSNGRRR 234
            P+ED  S S   FGW  V+IGYASG V G +LG + +TRKYEW  K + +  +  G+  
Sbjct: 896 APKEDEGSGSPLEFGWTVVVIGYASGLVTGAILGCVMNTRKYEWQVKNYFVSWQHKGQYL 955

Query: 235 VGRHR 239
             R R
Sbjct: 956 KTRLR 960

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140513|ref|XP_002323627.1| predicted protein [Populus trichocarpa] gi|222868257|gb|EEF05388.1| predicted protein [Populus trichocarpa]

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 120/244 (49%), Positives = 152/244 (62%), Gaps = 6/244 (2%)

Query: 1   MKDV-NANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILS 59
           MK+V N  +L Y+Q       +   +   G   YS+T++NKG    YEK+ + +T I LS
Sbjct: 705 MKNVRNDQHLIYMQAN--ASFQTSQIRMTGKYEYSMTMTNKGVMRLYEKIQDSLTVIDLS 762

Query: 60  NNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQL 119
            N F G IP  + +LK L  LNLS N L G IPP+L NL  LE+LDLS NKLSG+IP QL
Sbjct: 763 RNGFEGGIPEVLGDLKALHLLNLSNNFLSGGIPPSLSNLKKLEALDLSQNKLSGEIPVQL 822

Query: 120 GELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLSKQCDNSATS---PP 176
            +LT L VF+VS N L+G IPRG QF TF   SFD NP LCG+PLSK+C N+        
Sbjct: 823 AQLTFLAVFNVSHNFLSGRIPRGNQFETFDNTSFDANPALCGEPLSKECGNNGEDSLPAA 882

Query: 177 EEDPHSESLFAFGWKTVLIGYASGTVIGVVLGHIFSTRKYEWLAKTFRLQPKSNGRRRVG 236
           +ED  S     FGWK V+IGYASG VIGV+LG   +TRKYEWL K +  + ++ G+    
Sbjct: 883 KEDEGSGYQLEFGWKVVVIGYASGLVIGVILGCAMNTRKYEWLVKNYFARRQNKGQDLKT 942

Query: 237 RHRQ 240
           R R+
Sbjct: 943 RLRR 946

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794486|emb|CAN71611.1| hypothetical protein VITISV_000631 [Vitis vinifera]

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 117/228 (51%), Positives = 148/228 (64%), Gaps = 6/228 (2%)

Query: 1    MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSN 60
            M  V+  + +Y+Q  + G V       Y    YS+T++NKG E  Y K+     AI LS+
Sbjct: 1691 MSRVDEEHFSYMQS-MTGFVLIRTYRLYENYNYSMTMTNKGMERVYPKIPRSFKAIDLSS 1749

Query: 61   NSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLG 120
            N F+GEIP SI  L+GL  LN+S+NSL GHIP  LGNL  LE+LDLS N LSG+IPQQL 
Sbjct: 1750 NKFIGEIPKSIGKLRGLHLLNISSNSLTGHIPSFLGNLAQLEALDLSQNNLSGEIPQQLK 1809

Query: 121  ELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLSKQCDNS---ATSPP- 176
             +T LE F+VS N L GPIP+GKQFNTF   S++GNPGLCG PLSK+C NS   A+SPP 
Sbjct: 1810 GMTFLEFFNVSHNHLMGPIPQGKQFNTFQNDSYEGNPGLCGNPLSKECGNSKSTASSPPT 1869

Query: 177  -EEDPHSESLFAFGWKTVLIGYASGTVIGVVLGHIFSTRKYEWLAKTF 223
             +     ES        VL+GY SG V+G+ +G+  +TRK+EW  KTF
Sbjct: 1870 YKHGGDLESGRKVELMIVLMGYGSGLVVGMAIGYTLTTRKHEWFVKTF 1917

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782974|emb|CAN66148.1| hypothetical protein VITISV_036826 [Vitis vinifera]

 Score =  213 bits (542), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 120/246 (48%), Positives = 152/246 (61%), Gaps = 18/246 (7%)

Query: 1    MKDVNANNLTYLQDPLLGPVRYPALTY--YGFSYYSLTLSNKGTELEYEKLSNLITAIIL 58
            MK ++A+N TY+Q        +   TY  Y    YS+T++NKG E  YEK+  +  AI  
Sbjct: 1484 MKSIDADNFTYMQ----ASSGFSTQTYKLYDNYTYSMTMTNKGMERVYEKIPGIFRAIDF 1539

Query: 59   SNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQ 118
            S+N F GEIPTSI  LKGL  LN S NSL G IP +L NL  LE+LDLS N L G+IPQQ
Sbjct: 1540 SSNKFKGEIPTSIGTLKGLHLLNFSXNSLTGRIPTSLRNLTELEALDLSQNNLLGEIPQQ 1599

Query: 119  LGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLSKQCDNSATSPP-- 176
            L E+T L  F+VS N LTGPIP+ KQF+TF   S++GNPGLCG PL ++C N   + P  
Sbjct: 1600 LTEMTFLGFFNVSHNNLTGPIPQXKQFDTFQSDSYEGNPGLCGNPLIRKCGNPKQASPQP 1659

Query: 177  ---EEDPHSESLFAFGWKTVLIGYASGTVIGVVLGHIFSTRKYEWLAKTFRLQPKSNGRR 233
               E+    E    F  K VL+GY S  V GV++G+IF+TRK+EW  KTF       GRR
Sbjct: 1660 STSEQGQDLEPASXFDRKVVLMGYXSXLVFGVIIGYIFTTRKHEWFVKTF-------GRR 1712

Query: 234  RVGRHR 239
            +  + R
Sbjct: 1713 QQQQER 1718

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548694|ref|XP_002515403.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223545347|gb|EEF46852.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 117/244 (47%), Positives = 153/244 (62%), Gaps = 16/244 (6%)

Query: 1   MKDVNANNLTYLQDPLLGPVRYPALTYYGFSY--YSLTLSNKGTELEYEKLSNLITAIIL 58
           MK ++ + L Y++      + +  L Y   ++  YS+T++NKG E  YE++      I  
Sbjct: 742 MKSIDQDQLKYIE----VDISFQVLDYSWSNHFSYSITITNKGRETTYERILKFFAVINF 797

Query: 59  SNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQ 118
           S+N F G IP  I NL+ ++ LNLS N L G IPP+LG++  LE+LDLS N+LSG+IP +
Sbjct: 798 SSNRFEGRIPEVIGNLREVQLLNLSNNILTGQIPPSLGSMKELEALDLSRNQLSGEIPMK 857

Query: 119 LGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLSKQCDNS-----AT 173
           L +L+ L  F+VSDN LTGP+PRG QF+TF   SFD NPGLCG PLSK+C  S     A 
Sbjct: 858 LAQLSFLAFFNVSDNNLTGPVPRGNQFDTFENNSFDANPGLCGNPLSKKCGFSEASTLAP 917

Query: 174 SPPEEDPHSESLFAFGWKTVLIGYASGTVIGVVLGHIFSTRKYEWLAKTFRLQPKSNGRR 233
           S  E+D  SE    FGWK VL GYASG VIGVV+G I  T K EWL  TF     +N + 
Sbjct: 918 SNFEQDQGSEFPLEFGWKVVLFGYASGLVIGVVIGCILDTEKNEWLVNTF-----ANWQL 972

Query: 234 RVGR 237
           +V R
Sbjct: 973 KVRR 976

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
TAIR|locus:2046397	589	RLP22 "receptor like protein 2	0.772	0.317	0.462	3.4e-38
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.805	0.222	0.451	1.2e-37
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.805	0.196	0.428	2.7e-37
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.855	0.210	0.422	5.5e-37
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.838	0.199	0.426	1.3e-36
TAIR|locus:5019474716	543	AT2G15042 [Arabidopsis thalian	0.814	0.362	0.430	4.4e-36
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.842	0.235	0.427	1e-35
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.814	0.220	0.418	3.8e-35
TAIR|locus:2046515	864	RLP24 "receptor like protein 2	0.805	0.225	0.429	5.7e-35
TAIR|locus:2046600	800	RLP26 "receptor like protein 2	0.801	0.242	0.427	6e-35

TAIR|locus:2046397 RLP22 "receptor like protein 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 87/188 (46%), Positives = 108/188 (57%)

Query:    34 SLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP 93
             +L L  KG  +E  K+    +AI  S N   GEIP SI  LK L  LNLS NS  GHIP 
Sbjct:   390 TLDLQYKGLYMEQGKVLTFYSAIDFSGNKLEGEIPESIGLLKTLIALNLSNNSFTGHIPM 449

Query:    94 TLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSF 153
             +  N+  LESLDLS NKLSG+IPQ+LG L+ L   DVSDN LTG IP+G Q     K SF
Sbjct:   450 SFANVTELESLDLSGNKLSGEIPQELGRLSYLAYIDVSDNQLTGKIPQGTQIIGQPKSSF 509

Query:   154 DGNPGLCGQPLSKQCDNSATSPPEEDPHSESLFAFGWKTVLIGYASGTVIGVVLGHIFST 213
             +GN GLCG PL + C     +P  ++P  E      W+   IGY  G + G+ +GH+ + 
Sbjct:   510 EGNSGLCGLPLEESCLRE-DAPSTQEPEEEEEEILEWRAAAIGYGPGVLFGLAIGHVVAL 568

Query:   214 RKYEWLAK 221
              K  W  K
Sbjct:   569 YKPGWFIK 576

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 1.2e-37, P = 1.2e-37
 Identities = 89/197 (45%), Positives = 113/197 (57%)

Query:    27 YYGFSYY--SLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLST 84
             Y G  YY  S+ L NKG E+E  ++  + TA+  S N F GEIP SI  LK L  LNLS+
Sbjct:   661 YMGSGYYHDSMVLMNKGLEMELVRILKIYTALDFSGNKFEGEIPRSIGLLKELHILNLSS 720

Query:    85 NSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQ 144
             N   GHIP ++GNL  LESLD+S NKLSG+IPQ+LG L+ L   + S N L G +P G Q
Sbjct:   721 NGFTGHIPSSMGNLRELESLDVSRNKLSGEIPQELGNLSYLAYMNFSHNQLVGQVPGGTQ 780

Query:   145 FNTFGKGSFDGNPGLCGQPLSKQCDNSATSPPEEDPHSESLFAFGWKTVLIGYASGTVIG 204
             F T    SF+ N GLCG+PL +       +P  E    ES     W    IG+  G V+G
Sbjct:   781 FRTQSASSFEENLGLCGRPLEECRVVHEPTPSGESETLESEQVLSWIAAAIGFTPGIVLG 840

Query:   205 VVLGHIFSTRKYEWLAK 221
             + +GHI  + K  W  K
Sbjct:   841 LTIGHIVLSSKPRWFFK 857

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 2.7e-37, P = 2.7e-37
 Identities = 87/203 (42%), Positives = 120/203 (59%)

Query:    28 YGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSL 87
             YG+ Y SL L NKG  +E +++    T I  + N   G+IP S+  LK L  LNLS+N+ 
Sbjct:   782 YGY-YTSLVLMNKGVSMEMQRILTKYTVIDFAGNKIQGKIPESVGILKELHVLNLSSNAF 840

Query:    88 QGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNT 147
              GHIP +L NL  LESLD+S NK+ G+IP +LG L++LE  +VS N L G IP+G QF+ 
Sbjct:   841 TGHIPSSLANLTNLESLDISQNKIGGEIPPELGTLSSLEWINVSHNQLVGSIPQGTQFHR 900

Query:   148 FGKGSFDGNPGLCGQPLSKQC-DNSATSPPEED-PHSESLFA-----FGWKTVLIGYASG 200
                 S++GNPG+ G  L   C D  A  PP+   PHS S  +       W    +G+A G
Sbjct:   901 QNCSSYEGNPGIYGSSLKDVCGDIHAPRPPQAVLPHSSSSSSEEDELISWIAACLGFAPG 960

Query:   201 TVIGVVLGHIFSTRKYEWLAKTF 223
              V G+ +G+I ++ K+EW   TF
Sbjct:   961 MVFGLTMGYIMTSHKHEWFMDTF 983

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 5.5e-37, P = 5.5e-37
 Identities = 90/213 (42%), Positives = 118/213 (55%)

Query:    22 YPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81
             Y +  Y+ F   S+ L NKG E+E E++  + T I  S N F GEIP SI  LK L  LN
Sbjct:   767 YMSTDYFYFD--SMVLMNKGVEMELERVLKVFTVIDFSGNKFEGEIPKSIGLLKELHVLN 824

Query:    82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPR 141
             LS N+L GHI  ++GNL+ LESLD+S NKLSG+IPQ+LG+LT L   + S N L G +P 
Sbjct:   825 LSNNALSGHIASSMGNLMALESLDVSQNKLSGEIPQELGKLTYLAYMNFSHNQLVGLLPG 884

Query:   142 GKQFNTFGKGSFDGNPGLCGQPLSKQCDNSATSPPEED----PHSESLFAFGWKTVLIGY 197
             G QF T    SF+ N GL G  L K CD    +P + D    P  +      W   +IG+
Sbjct:   885 GTQFQTQKCSSFEDNHGLYGPSLEKICDIHGKTPQQSDMAPEPEEDEEEVISWIAAVIGF 944

Query:   198 ASGTVIGVVLGHIFSTRKYEWLAKTFRLQPKSN 230
               GT +G+  G I  + K +W    F    + N
Sbjct:   945 ILGTALGLTFGCILFSYKPDWFKNPFVRDKRRN 977

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 90/211 (42%), Positives = 124/211 (58%)

Query:    28 YGFS--YY-SLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLST 84
             YG S  YY SL L +KG  +E E++  + TAI LS N   G+IP SI  LK LR LN+S+
Sbjct:   805 YGSSLGYYTSLVLMSKGVSMEMERVLTIYTAIDLSGNQLHGKIPDSIGLLKELRILNMSS 864

Query:    85 NSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQ 144
             N   GHIP +L NL  LESLD+S N +SG+IP +LG L++L   +VS N L G IP+G Q
Sbjct:   865 NGFTGHIPSSLANLKNLESLDISQNNISGEIPPELGTLSSLAWINVSHNQLVGSIPQGTQ 924

Query:   145 FNTFGKGSFDGNPGLCGQPLSKQCDN-SATSPPEEDP----HSESLFAFGWKTVLIGYAS 199
             F      S++GNPGL G  L   C +   ++P + +P      E   +F W    +G+A 
Sbjct:   925 FQRQKCSSYEGNPGLNGPSLENVCGHIKESTPTQTEPLETKEEEEEESFSWIAAGLGFAP 984

Query:   200 GTVIGVVLGHIFSTRKYEWLAKTFRLQPKSN 230
             G V G+ +G+I  + K++W  KTF    + N
Sbjct:   985 GVVFGLAMGYIVVSYKHQWFMKTFGRSKQQN 1015

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:5019474716 AT2G15042 [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 87/202 (43%), Positives = 112/202 (55%)

Query:    27 YYGFSYYS--LTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLST 84
             Y G SYYS  + + NKG E+E  ++  + T++  S N F GEIP SI  LK L  LNLS+
Sbjct:   329 YMGTSYYSDSIVVMNKGLEMEMVRILKIFTSVDFSRNKFEGEIPKSIGLLKELHVLNLSS 388

Query:    85 NSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQ 144
             N+  GHIP ++G L  LESLD++ NKLSG IPQ LG+L+ L   + S N L GP+P G Q
Sbjct:   389 NTFTGHIPSSMGKLRELESLDVAQNKLSGDIPQDLGDLSYLAYMNFSHNQLVGPLPGGTQ 448

Query:   145 FNTFGKGSFDGNPGLCGQPLSKQCD-NSATSPPEEDPHSES--LFAFGWKTVLIGYASGT 201
             F T    SF+ N G  G  L K CD +  T    E P SE        W    IG+  G 
Sbjct:   449 FLTQNCSSFEENAGHFGPSLEKVCDIHGKTMQESEMPGSEEDEEEVISWIAATIGFIPGI 508

Query:   202 VIGVVLGHIFSTRKYEWLAKTF 223
               G+++G+I    K EW    F
Sbjct:   509 AFGLMMGYILVCYKPEWFMNVF 530

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 1.0e-35, P = 1.0e-35
 Identities = 91/213 (42%), Positives = 118/213 (55%)

Query:    27 YYG--FSYY--SLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNL 82
             Y G  F YY  S+ L NKG E+E  ++  + TA+  S N   GEIP SI  LK L  LNL
Sbjct:   648 YMGDSFRYYHDSVVLMNKGLEMELVRILKIYTALDFSENKLEGEIPRSIGLLKELHVLNL 707

Query:    83 STNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG 142
             S+N+  GHIP ++GNL  LESLD+S NKLSG+IPQ+LG L+ L   + S N L G +P G
Sbjct:   708 SSNAFTGHIPSSMGNLRELESLDVSQNKLSGEIPQELGNLSYLAYMNFSHNQLGGLVPGG 767

Query:   143 KQFNTFGKGSFDGNPGLCGQPLSKQC-DNSATSPPEEDP---HSESLFAFGWKTVLIGYA 198
              QF      SF  NPGL G  L + C D  A +P + +P     E    F W    IG+ 
Sbjct:   768 TQFRRQNCSSFKDNPGLYGSSLEEVCLDIHAPAPQQHEPPELEEEDREVFSWIAAAIGFG 827

Query:   199 SGTVIGVVLGHIFSTRKYEWLAKTF-RLQPKSN 230
              G   G+ + +I    K +W   TF  LQP ++
Sbjct:   828 PGIAFGLTIRYILVFYKPDWFMHTFGHLQPSAH 860

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 3.8e-35, P = 3.8e-35
 Identities = 87/208 (41%), Positives = 115/208 (55%)

Query:    25 LTYYGFSYY--SLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNL 82
             + Y G  YY  S+ L NKG E E  ++  + TA+  S N F GEIP SI  LK L  LNL
Sbjct:   675 VNYLGSGYYQDSMVLMNKGVESELVRILTIYTAVDFSGNKFEGEIPKSIGLLKELHVLNL 734

Query:    83 STNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG 142
             S N+  GHIP ++GNL  LESLD+S NKL G+IPQ++G L+ L   + S N LTG +P G
Sbjct:   735 SNNAFTGHIPSSIGNLTALESLDVSQNKLYGEIPQEIGNLSLLSYMNFSHNQLTGLVPGG 794

Query:   143 KQFNTFGKGSFDGNPGLCGQPLSKQCDNSAT-------SPPEEDPHSESLFAFGWKTVLI 195
             +QF T    SF+GN GL G  L + C +  T         P+ +   E L +  W    I
Sbjct:   795 QQFLTQRCSSFEGNLGLFGSSLEEVCRDIHTPASHQQFETPQTEEEDEDLIS--WIAAAI 852

Query:   196 GYASGTVIGVVLGHIFSTRKYEWLAKTF 223
             G+  G   G++ G+I  + K EW    F
Sbjct:   853 GFGPGIAFGLMFGYILVSYKPEWFMNPF 880

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046515 RLP24 "receptor like protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-35, P = 5.7e-35
 Identities = 88/205 (42%), Positives = 116/205 (56%)

Query:    19 PVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLR 78
             PVRY   TY      ++ L  KG  +E E++     AI  S N   G+IP SI  LK L 
Sbjct:   664 PVRY---TYTD----TIDLQYKGLHMEQERVLTSYAAIDFSGNRLQGQIPESIGLLKALI 716

Query:    79 TLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGP 138
              LNLS N+  GHIP +  NL+ LESLD+S N+LSG IP  LG L+ L    V+ N L G 
Sbjct:   717 ALNLSNNAFTGHIPLSFANLMNLESLDMSGNQLSGTIPNGLGSLSFLVYISVAHNKLKGE 776

Query:   139 IPRGKQFNTFGKGSFDGNPGLCGQPLSKQCDNSATSP--PEEDPHSESLFAFGWKTVLIG 196
             IP+G Q     K SF+GN GLCG PL + C +S+  P  P+++   +      WK V IG
Sbjct:   777 IPQGTQITGQIKSSFEGNAGLCGLPLQETCFDSSVPPIQPKQEDEEKGE-VINWKAVAIG 835

Query:   197 YASGTVIGVVLGHIFSTRKYEWLAK 221
             YA G + G+ + H+ ++ K EWL K
Sbjct:   836 YAPGLLFGLAIAHLIASYKPEWLVK 860

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046600 RLP26 "receptor like protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 6.0e-35, P = 6.0e-35
 Identities = 85/199 (42%), Positives = 112/199 (56%)

Query:    28 YGFSYY----SLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLS 83
             Y  +YY    ++ L  KG  +E  K+    + I  S N   G+IP SI  LK L  LNLS
Sbjct:   565 YKNAYYIYEDTMDLQYKGLFMEQGKVLTFYSTIDFSGNKLEGQIPESIGLLKELIALNLS 624

Query:    84 TNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK 143
              N+  GHIP +L N+  LESLDLS N+LSG IP++LG L+ L    V+ N L G IP+G 
Sbjct:   625 NNAFTGHIPMSLANVTELESLDLSRNQLSGNIPRELGSLSFLAYISVAHNQLKGEIPQGP 684

Query:   144 QFNTFGKGSFDGNPGLCGQPLSKQCDNSATS-PPEEDPHSESLFAFGWKTVLIGYASGTV 202
             QF+   + SF+GN GLCG PL   C    T  P EED   E      WK V  GY  G +
Sbjct:   685 QFSGQAESSFEGNVGLCGLPLQGSCVAPPTKYPKEEDEEEEEDEVIEWKAVFFGYWPGLL 744

Query:   203 IGVVLGHIFSTRKYEWLAK 221
             +G+V+ H+ ++ K +W  K
Sbjct:   745 LGLVMAHVIASFKPKWFVK 763

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	242
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-25
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-18
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.003

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score =  102 bits (257), Expect = 4e-25
 Identities = 49/125 (39%), Positives = 72/125 (57%), Gaps = 14/125 (11%)

Query: 52  LITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKL 111
            I  + L N    G IP  I+ L+ L+++NLS NS++G+IPP+LG++  LE LDLS N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 112 SGQIPQQLGELTTLEVFDVSDNLLTGPIP--------RGKQFNTFGKGSFDGNPGLCGQP 163
           +G IP+ LG+LT+L + +++ N L+G +P            FN      F  N GLCG P
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN------FTDNAGLCGIP 532

Query: 164 LSKQC 168
             + C
Sbjct: 533 GLRAC 537

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 82.2 bits (203), Expect = 6e-18
 Identities = 43/104 (41%), Positives = 59/104 (56%)

Query: 58  LSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQ 117
           LS N   GEIP  +++ K L +L+LS N L G IP +   + VL  LDLS N+LSG+IP+
Sbjct: 506 LSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565

Query: 118 QLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCG 161
            LG + +L   ++S N L G +P    F      +  GN  LCG
Sbjct: 566 NLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 78.7 bits (194), Expect = 9e-17
 Identities = 41/85 (48%), Positives = 49/85 (57%)

Query: 56  IILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQI 115
           I L  N+  GEIP  I  L  L  L+L  N+L G IP +LGNL  L+ L L  NKLSG I
Sbjct: 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276

Query: 116 PQQLGELTTLEVFDVSDNLLTGPIP 140
           P  +  L  L   D+SDN L+G IP
Sbjct: 277 PPSIFSLQKLISLDLSDNSLSGEIP 301

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 78.0 bits (192), Expect = 2e-16
 Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 1/94 (1%)

Query: 49  LSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSN 108
           L  LI+ + LS+NS  GEIP  +  L+ L  L+L +N+  G IP  L +L  L+ L L +
Sbjct: 283 LQKLIS-LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341

Query: 109 NKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG 142
           NK SG+IP+ LG+   L V D+S N LTG IP G
Sbjct: 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 77.6 bits (191), Expect = 2e-16
 Identities = 41/92 (44%), Positives = 58/92 (63%), Gaps = 1/92 (1%)

Query: 49  LSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSN 108
           + NL T + LSNN   GEIP  I +   L+ L+L  N L G IP +L NL  LE L L++
Sbjct: 139 IPNLET-LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197

Query: 109 NKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
           N+L GQIP++LG++ +L+   +  N L+G IP
Sbjct: 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP 229

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 77.2 bits (190), Expect = 3e-16
 Identities = 38/82 (46%), Positives = 52/82 (63%)

Query: 61  NSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLG 120
           N+  G IP+S+ NLK L+ L L  N L G IPP++ +L  L SLDLS+N LSG+IP+ + 
Sbjct: 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305

Query: 121 ELTTLEVFDVSDNLLTGPIPRG 142
           +L  LE+  +  N  TG IP  
Sbjct: 306 QLQNLEILHLFSNNFTGKIPVA 327

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 74.1 bits (182), Expect = 4e-15
 Identities = 39/83 (46%), Positives = 51/83 (61%)

Query: 58  LSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQ 117
           L  N  VG+IP S+ NL  L  L L++N L G IP  LG +  L+ + L  N LSG+IP 
Sbjct: 171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY 230

Query: 118 QLGELTTLEVFDVSDNLLTGPIP 140
           ++G LT+L   D+  N LTGPIP
Sbjct: 231 EIGGLTSLNHLDLVYNNLTGPIP 253

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 72.6 bits (178), Expect = 1e-14
 Identities = 39/84 (46%), Positives = 50/84 (59%), Gaps = 2/84 (2%)

Query: 58  LSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQ 117
           LSNN+F G IP    ++  L TL+LS N L G IP  +G+   L+ LDL  N L G+IP 
Sbjct: 125 LSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182

Query: 118 QLGELTTLEVFDVSDNLLTGPIPR 141
            L  LT+LE   ++ N L G IPR
Sbjct: 183 SLTNLTSLEFLTLASNQLVGQIPR 206

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 72.6 bits (178), Expect = 1e-14
 Identities = 39/83 (46%), Positives = 48/83 (57%)

Query: 58  LSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQ 117
           LS N F G +P  + +L  L  L LS N L G IP  L +   L SLDLS+N+LSGQIP 
Sbjct: 482 LSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA 541

Query: 118 QLGELTTLEVFDVSDNLLTGPIP 140
              E+  L   D+S N L+G IP
Sbjct: 542 SFSEMPVLSQLDLSQNQLSGEIP 564

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 69.5 bits (170), Expect = 1e-13
 Identities = 41/100 (41%), Positives = 54/100 (54%), Gaps = 3/100 (3%)

Query: 49  LSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSN 108
           L NL   + L  N   G IP SI +L+ L +L+LS NSL G IP  +  L  LE L L +
Sbjct: 259 LKNL-QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS 317

Query: 109 NKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPR--GKQFN 146
           N  +G+IP  L  L  L+V  +  N  +G IP+  GK  N
Sbjct: 318 NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNN 357

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 65.3 bits (159), Expect = 4e-12
 Identities = 33/89 (37%), Positives = 50/89 (56%)

Query: 51  NLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNK 110
           N +T + LS N+  GEIP  + +   L  L L +NSL+G IP +LG    L  + L +N 
Sbjct: 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415

Query: 111 LSGQIPQQLGELTTLEVFDVSDNLLTGPI 139
            SG++P +  +L  +   D+S+N L G I
Sbjct: 416 FSGELPSEFTKLPLVYFLDISNNNLQGRI 444

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 64.9 bits (158), Expect = 4e-12
 Identities = 36/97 (37%), Positives = 59/97 (60%), Gaps = 2/97 (2%)

Query: 45  EYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESL 104
           E+ KL  L+  + +SNN+  G I +   ++  L+ L+L+ N   G +P + G+   LE+L
Sbjct: 423 EFTKLP-LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENL 480

Query: 105 DLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPR 141
           DLS N+ SG +P++LG L+ L    +S+N L+G IP 
Sbjct: 481 DLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD 517

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 64.1 bits (156), Expect = 8e-12
 Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 3/92 (3%)

Query: 50  SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIV-LESLDLSN 108
           S+ + +I LS  +  G+I ++I  L  ++T+NLS N L G IP  +      L  L+LSN
Sbjct: 68  SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSN 127

Query: 109 NKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
           N  +G IP+  G +  LE  D+S+N+L+G IP
Sbjct: 128 NNFTGSIPR--GSIPNLETLDLSNNMLSGEIP 157

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.8 bits (150), Expect = 5e-11
 Identities = 33/85 (38%), Positives = 46/85 (54%)

Query: 58  LSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQ 117
           L +N F GEIP ++     L  L+LSTN+L G IP  L +   L  L L +N L G+IP+
Sbjct: 339 LWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK 398

Query: 118 QLGELTTLEVFDVSDNLLTGPIPRG 142
            LG   +L    + DN  +G +P  
Sbjct: 399 SLGACRSLRRVRLQDNSFSGELPSE 423

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.4 bits (149), Expect = 8e-11
 Identities = 30/91 (32%), Positives = 50/91 (54%)

Query: 50  SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNN 109
           S  +  +IL +NS  GEIP S+   + LR + L  NS  G +P     L ++  LD+SNN
Sbjct: 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438

Query: 110 KLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
            L G+I  +  ++ +L++  ++ N   G +P
Sbjct: 439 NLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.0 bits (148), Expect = 9e-11
 Identities = 55/147 (37%), Positives = 72/147 (48%), Gaps = 16/147 (10%)

Query: 5   NANNLTYL---QDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYE----KLSNLITAII 57
           N  NL YL   Q+ L GP+  P   +      SL LS+     E      +L NL    +
Sbjct: 258 NLKNLQYLFLYQNKLSGPI--PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315

Query: 58  LSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQ 117
            SNN F G+IP ++ +L  L+ L L +N   G IP  LG    L  LDLS N L+G+IP+
Sbjct: 316 FSNN-FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374

Query: 118 QL---GELTTLEVFDVSDNLLTGPIPR 141
            L   G L  L +F    N L G IP+
Sbjct: 375 GLCSSGNLFKLILF---SNSLEGEIPK 398

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 57.9 bits (140), Expect = 1e-09
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 58  LSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQ 117
           L +NSF GE+P+    L  +  L++S N+LQG I     ++  L+ L L+ NK  G +P 
Sbjct: 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470

Query: 118 QLGELTTLEVFDVSDNLLTGPIPRG 142
             G    LE  D+S N  +G +PR 
Sbjct: 471 SFGS-KRLENLDLSRNQFSGAVPRK 494

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.5 bits (126), Expect = 6e-08
 Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 73  NLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELT-TLEVFDVS 131
           N   + +++LS  ++ G I   +  L  +++++LSNN+LSG IP  +   + +L   ++S
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 132 DNLLTGPIPRGKQFN 146
           +N  TG IPRG   N
Sbjct: 127 NNNFTGSIPRGSIPN 141

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.1 bits (109), Expect = 6e-06
 Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 7/140 (5%)

Query: 5   NANNLTYLQDPLLGPVRY----PALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILS- 59
               LT L    L         P +     +   L LS+   E     L NL     L  
Sbjct: 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDL 170

Query: 60  NNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQL 119
           + + + ++P  ++NL  L  L+LS N +   +PP +  L  LE LDLSNN +  ++   L
Sbjct: 171 SFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSL 228

Query: 120 GELTTLEVFDVSDNLLTGPI 139
             L  L   ++S+N L    
Sbjct: 229 SNLKNLSGLELSNNKLEDLP 248

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 56  IILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLSNNKL 111
           + LSNN        +   L  L+ L+LS N+L   I P     L  L SLDLS N L
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.4 bits (102), Expect = 5e-05
 Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 6/106 (5%)

Query: 34  SLTLSNKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSIANLK-GLRTLNLSTNSLQGH 90
           SL L+         +L  L  +T++ L NN+ + +IP  I  LK  L+ L+LS N ++  
Sbjct: 97  SLDLNLNRLRSNISELLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNKIE-S 154

Query: 91  IPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
           +P  L NL  L++LDLS N LS  +P+ L  L+ L   D+S N ++
Sbjct: 155 LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS 199

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 76  GLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNL 134
            L++L+LS N L   IP      L  L+ LDLS N L+   P+    L +L   D+S N 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 135 L 135
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 28/154 (18%), Positives = 51/154 (33%), Gaps = 16/154 (10%)

Query: 1   MKDVNANNLTYLQDPLLGPV--RYPALTYYGFSYYSLTLSNKGT--ELEYEKLSNLITAI 56
           +  +  N L       L       P+L     S        +G    L+       +  +
Sbjct: 27  VLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQEL 86

Query: 57  ILSNNSFVGEIPTSIANL---KGLRTLNLSTNSLQGHIPPTLG-----NLIVLESLDLSN 108
            LS+N+   +    + +L     L+ L L+ N L       L          LE L L  
Sbjct: 87  DLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGR 146

Query: 109 NKLSGQIPQQLGEL----TTLEVFDVSDNLLTGP 138
           N+L G   + L +       L+  ++++N +   
Sbjct: 147 NRLEGASCEALAKALRANRDLKELNLANNGIGDA 180

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 38.0 bits (88), Expect = 0.003
 Identities = 36/94 (38%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 34  SLTLSNKGTELEYEKLSNLITAIILS-NNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIP 92
            L LSN         LSNL     L  +N+ + ++P SI NL  L TL+LS N +     
Sbjct: 213 ELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS--SI 270

Query: 93  PTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLE 126
            +LG+L  L  LDLS N LS  +P     L  LE
Sbjct: 271 SSLGSLTNLRELDLSGNSLSNALPLIALLLLLLE 304

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	242
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.85
PLN03150	623	hypothetical protein; Provisional	99.78
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.72
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.7
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.59
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.56
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.47
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.44
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.4
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.35
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.29
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.29
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.24
PLN03150	623	hypothetical protein; Provisional	99.23
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.2
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.16
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.16
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.15
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.12
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.12
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.08
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.08
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.04
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.01
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.97
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.87
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.86
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.85
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.85
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.81
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.79
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.7
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.69
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.68
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.57
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.5
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.42
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.37
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.34
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.32
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.16
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.13
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.13
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.12
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.09
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.97
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.96
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.76
PRK15386	426	type III secretion protein GogB; Provisional	97.59
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.5
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.38
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.34
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.24
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.18
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.15
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.1
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.0
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.78
PRK15386	426	type III secretion protein GogB; Provisional	96.68
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.48
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.81
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.65
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.51
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.31
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.29
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.22
KOG2123	388	consensus Uncharacterized conserved protein [Funct	93.57
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.31
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	92.93
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	92.16
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.75
smart00370	26	LRR Leucine-rich repeats, outliers.	91.75
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	91.53
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.46
smart00370	26	LRR Leucine-rich repeats, outliers.	91.46
PF08374	221	Protocadherin: Protocadherin; InterPro: IPR013585	89.24
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	88.64
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	86.14
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	86.1
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	84.06
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	83.43
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	82.04
PF13908	179	Shisa: Wnt and FGF inhibitory regulator	81.65
PF15102	146	TMEM154: TMEM154 protein family	81.3
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	80.22

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.85  E-value=6.7e-21  Score=183.43  Aligned_cols=160  Identities=31%  Similarity=0.473  Sum_probs=122.9

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecC-------------------CchhhHHHhhcCccEEEccCCC
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNK-------------------GTELEYEKLSNLITAIILSNNS   62 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~-------------------~~~~~~~~~~~~L~~L~Ls~n~   62 (242)
                      +||++|+|....+..+.  .+++|+.|++++|.+...-.                   +..+.....+++|+.|+|++|.
T Consensus       433 L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  510 (968)
T PLN00113        433 LDISNNNLQGRINSRKW--DMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK  510 (968)
T ss_pred             EECcCCcccCccChhhc--cCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCc
Confidence            56666766655554444  55666666666655432110                   0111223446778888888888


Q ss_pred             CccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC
Q 026180           63 FVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG  142 (242)
Q Consensus        63 i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~  142 (242)
                      +.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+..|+.+++++|++.|.+|..
T Consensus       511 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~  590 (968)
T PLN00113        511 LSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST  590 (968)
T ss_pred             ceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence            88888888888899999999999999888888889999999999999999888988888899999999999999999988


Q ss_pred             CCCCCcCCccccCCCCCCCCC
Q 026180          143 KQFNTFGKGSFDGNPGLCGQP  163 (242)
Q Consensus       143 ~~~~~~~~~~~~~n~~~c~~~  163 (242)
                      ..+.++....+.||+.+|+.+
T Consensus       591 ~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        591 GAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             chhcccChhhhcCCccccCCc
Confidence            777788888889999999754

>PLN03150 hypothetical protein; Provisional

Probab=99.78  E-value=1.5e-18  Score=159.15  Aligned_cols=117  Identities=40%  Similarity=0.730  Sum_probs=106.0

Q ss_pred             ccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCC
Q 026180           53 ITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSD  132 (242)
Q Consensus        53 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~  132 (242)
                      ++.|+|++|.++|.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..++.+++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccCCCCCCC--CCCcCCccccCCCCCCCCCCCCCCC
Q 026180          133 NLLTGPIPRGKQ--FNTFGKGSFDGNPGLCGQPLSKQCD  169 (242)
Q Consensus       133 N~l~~~~p~~~~--~~~~~~~~~~~n~~~c~~~~~~~c~  169 (242)
                      |.++|.+|....  ......+.+.+|+.+|+.+....|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999998643  2234567789999999987656674

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.72  E-value=3.3e-17  Score=157.94  Aligned_cols=160  Identities=29%  Similarity=0.404  Sum_probs=119.9

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhh-----------------H--HHhhcCccEEEccCCC
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELE-----------------Y--EKLSNLITAIILSNNS   62 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----------------~--~~~~~~L~~L~Ls~n~   62 (242)
                      ++|++|+++...+..|.  .+++|+.|++++|.+..........                 .  .....+|+.|++++|+
T Consensus       409 L~L~~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~  486 (968)
T PLN00113        409 VRLQDNSFSGELPSEFT--KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQ  486 (968)
T ss_pred             EECcCCEeeeECChhHh--cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCc
Confidence            35555665544444454  5666666777666655322110000                 0  0012457788888888


Q ss_pred             CccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC
Q 026180           63 FVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG  142 (242)
Q Consensus        63 i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~  142 (242)
                      +++..|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..
T Consensus       487 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  566 (968)
T PLN00113        487 FSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN  566 (968)
T ss_pred             cCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChh
Confidence            88888888899999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             C-CCCCcCCccccCCCCCCCCC
Q 026180          143 K-QFNTFGKGSFDGNPGLCGQP  163 (242)
Q Consensus       143 ~-~~~~~~~~~~~~n~~~c~~~  163 (242)
                      . .+..+..+.+.+|+..+..|
T Consensus       567 l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        567 LGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             HhcCcccCEEeccCCcceeeCC
Confidence            4 35567778888888766444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.70  E-value=9.1e-19  Score=152.81  Aligned_cols=158  Identities=21%  Similarity=0.224  Sum_probs=118.7

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +|||+|.|..|......  ..++|++|+|+.|.|+..+.+.+..    +..|++|.|++|+|+.....+|..+.+|++||
T Consensus       298 L~lS~NaI~rih~d~Ws--ftqkL~~LdLs~N~i~~l~~~sf~~----L~~Le~LnLs~Nsi~~l~e~af~~lssL~~Ld  371 (873)
T KOG4194|consen  298 LDLSYNAIQRIHIDSWS--FTQKLKELDLSSNRITRLDEGSFRV----LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLD  371 (873)
T ss_pred             hccchhhhheeecchhh--hcccceeEeccccccccCChhHHHH----HHHhhhhcccccchHHHHhhHHHHhhhhhhhc
Confidence            57777777777777766  6667777788777777766555543    77778888888888877777788888888888


Q ss_pred             ccCCCCCCCCCc---ccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCCC
Q 026180           82 LSTNSLQGHIPP---TLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPG  158 (242)
Q Consensus        82 L~~n~l~~~~p~---~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~  158 (242)
                      |++|.+++.+-+   .|.+|++|+.|++.+|++..+.-..|.++..|++|+|++|.+....|....-..+..+.+....+
T Consensus       372 Lr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  372 LRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSF  451 (873)
T ss_pred             CcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccce
Confidence            888888776554   36778888888888888875545578888888888888888886666554444566666777788


Q ss_pred             CCCCCCC
Q 026180          159 LCGQPLS  165 (242)
Q Consensus       159 ~c~~~~~  165 (242)
                      +|+|.+.
T Consensus       452 lCDCql~  458 (873)
T KOG4194|consen  452 LCDCQLK  458 (873)
T ss_pred             EEeccHH
Confidence            9999765

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.59  E-value=2.2e-16  Score=138.08  Aligned_cols=133  Identities=23%  Similarity=0.179  Sum_probs=112.8

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +.|+.|+|+.+|...|.  .++.|+.|+|..|.|..+...++.+    +++|+.|.|..|.|+....+.|-.+.++++|+
T Consensus       202 lkLsrNrittLp~r~Fk--~L~~L~~LdLnrN~irive~ltFqg----L~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~  275 (873)
T KOG4194|consen  202 LKLSRNRITTLPQRSFK--RLPKLESLDLNRNRIRIVEGLTFQG----LPSLQNLKLQRNDISKLDDGAFYGLEKMEHLN  275 (873)
T ss_pred             eecccCcccccCHHHhh--hcchhhhhhccccceeeehhhhhcC----chhhhhhhhhhcCcccccCcceeeecccceee
Confidence            45778888888888887  7888888888888888776555544    78888889999999888888899999999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP  140 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  140 (242)
                      |+.|+++..-..++.++..|+.|+|+.|.|+.+.++.|..+++|+.|+|++|.++..-+
T Consensus       276 L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~  334 (873)
T KOG4194|consen  276 LETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE  334 (873)
T ss_pred             cccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCCh
Confidence            99999997778888999999999999999998889999999999999999999985444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.56  E-value=4.8e-16  Score=130.31  Aligned_cols=95  Identities=25%  Similarity=0.277  Sum_probs=71.4

Q ss_pred             ccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcC
Q 026180           71 IANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFG  149 (242)
Q Consensus        71 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~  149 (242)
                      |..|++|++|+|++|+|+.+.+.+|.++..++.|.|..|++.......|.++..|+.|+|.+|+++..-|... ....+.
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~  349 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS  349 (498)
T ss_pred             HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence            4456677777777777777777777777777777777777776666677888899999999999997766543 234456


Q ss_pred             CccccCCCCCCCCCCC
Q 026180          150 KGSFDGNPGLCGQPLS  165 (242)
Q Consensus       150 ~~~~~~n~~~c~~~~~  165 (242)
                      .+.+-+|||.|+|.+.
T Consensus       350 ~l~l~~Np~~CnC~l~  365 (498)
T KOG4237|consen  350 TLNLLSNPFNCNCRLA  365 (498)
T ss_pred             eeehccCcccCccchH
Confidence            7788999999999765

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.47  E-value=6.1e-16  Score=116.65  Aligned_cols=147  Identities=19%  Similarity=0.308  Sum_probs=115.1

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +-||+|.++.+|+.+-   .+.+|+.|++.+|.|+-.+....     .++.|+.|+++-|++. ..|..|+.++.|+.||
T Consensus        38 LtLSHNKl~~vppnia---~l~nlevln~~nnqie~lp~~is-----sl~klr~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   38 LTLSHNKLTVVPPNIA---ELKNLEVLNLSNNQIEELPTSIS-----SLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhcccCceeecCCcHH---HhhhhhhhhcccchhhhcChhhh-----hchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence            4588999999988762   78899999999998887655443     2778888999999988 8899999999999999


Q ss_pred             ccCCCCCC-CCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCCCC
Q 026180           82 LSTNSLQG-HIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNPGL  159 (242)
Q Consensus        82 L~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~~~  159 (242)
                      |++|++.. .+|..|..+..|..|.|+.|.+. .+|..++.+.+|+.|.+..|.+. .+|... .+..+.++..+||...
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence            99988853 57777888888888888888887 77778888888888888888776 455443 4555666677777543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.44  E-value=1.9e-15  Score=114.02  Aligned_cols=130  Identities=29%  Similarity=0.355  Sum_probs=95.4

Q ss_pred             CCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCC
Q 026180           21 RYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIV  100 (242)
Q Consensus        21 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  100 (242)
                      .+.+++.|.+++|.++.++.++.     .+.+|+.|++++|+|+ .+|..++.++.|+.|+++-|++. ..|..|+.++.
T Consensus        31 ~~s~ITrLtLSHNKl~~vppnia-----~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~  103 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVVPPNIA-----ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA  103 (264)
T ss_pred             chhhhhhhhcccCceeecCCcHH-----Hhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCch
Confidence            56677778888888887765553     2667778888888887 77777788888888888888887 77888888888


Q ss_pred             CCEEeCCCCCCCC-CCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCC
Q 026180          101 LESLDLSNNKLSG-QIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNP  157 (242)
Q Consensus       101 L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~  157 (242)
                      |+.|||..|++.. .+|+.|..+..|+.|.++.|.|.-..|+...+.+++-+.+..|.
T Consensus       104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd  161 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND  161 (264)
T ss_pred             hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc
Confidence            8888888887764 36777777777888888888887555555556666666665553

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.40  E-value=1.1e-14  Score=128.63  Aligned_cols=132  Identities=30%  Similarity=0.455  Sum_probs=89.4

Q ss_pred             CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCcc---------------
Q 026180            1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVG---------------   65 (242)
Q Consensus         1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~---------------   65 (242)
                      ++|||+|+|..||...|-  .+..|-+|||++|.++..+...     +-+..|++|+|++|.+..               
T Consensus       130 VLNLS~N~IetIPn~lfi--nLtDLLfLDLS~NrLe~LPPQ~-----RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vL  202 (1255)
T KOG0444|consen  130 VLNLSYNNIETIPNSLFI--NLTDLLFLDLSNNRLEMLPPQI-----RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVL  202 (1255)
T ss_pred             EEEcccCccccCCchHHH--hhHhHhhhccccchhhhcCHHH-----HHHhhhhhhhcCCChhhHHHHhcCccchhhhhh
Confidence            467888888888888877  7777777888888877654332     124455556666655432               


Q ss_pred             ----------CcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCcc
Q 026180           66 ----------EIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLL  135 (242)
Q Consensus        66 ----------~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l  135 (242)
                                -+|.++..+.+|..+|+|.|.+. ..|+.+..+++|..|+||+|+|+ .+....+...+|+.|+++.|++
T Consensus       203 hms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQL  280 (1255)
T KOG0444|consen  203 HMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQL  280 (1255)
T ss_pred             hcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchh
Confidence                      24555666667777777777777 77777777777777777777777 3344455556777777777777


Q ss_pred             ccCCCCC
Q 026180          136 TGPIPRG  142 (242)
Q Consensus       136 ~~~~p~~  142 (242)
                      + .+|+.
T Consensus       281 t-~LP~a  286 (1255)
T KOG0444|consen  281 T-VLPDA  286 (1255)
T ss_pred             c-cchHH
Confidence            7 55654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.35  E-value=6e-13  Score=102.71  Aligned_cols=124  Identities=26%  Similarity=0.279  Sum_probs=42.3

Q ss_pred             CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180            1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL   80 (242)
Q Consensus         1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L   80 (242)
                      |+.|..|-|+.++...    ....+++|+|++|.|..++.-.     ..+.+|+.|+|++|.|+. ++ .+..++.|++|
T Consensus         1 ~~~lt~~~i~~~~~~~----n~~~~~~L~L~~n~I~~Ie~L~-----~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L   69 (175)
T PF14580_consen    1 MVRLTANMIEQIAQYN----NPVKLRELNLRGNQISTIENLG-----ATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTL   69 (175)
T ss_dssp             ---------------------------------------S-------TT-TT--EEE-TTS--S---T-T----TT--EE
T ss_pred             Cccccccccccccccc----cccccccccccccccccccchh-----hhhcCCCEEECCCCCCcc-cc-CccChhhhhhc
Confidence            6788899999999865    5668999999999999876422     126789999999999994 43 47789999999


Q ss_pred             eccCCCCCCCCCccc-CCCCCCCEEeCCCCCCCCCC-cccccCCCcccEEecCCCccc
Q 026180           81 NLSTNSLQGHIPPTL-GNLIVLESLDLSNNKLSGQI-PQQLGELTTLEVFDVSDNLLT  136 (242)
Q Consensus        81 ~L~~n~l~~~~p~~~-~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~  136 (242)
                      ++++|+|+ .+.+.+ ..+++|+.|++++|+|.... -..+..+++|+.|++.+|+++
T Consensus        70 ~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   70 DLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             E--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             ccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            99999999 454444 46899999999999997532 135778999999999999997

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.29  E-value=2.9e-13  Score=119.85  Aligned_cols=152  Identities=26%  Similarity=0.352  Sum_probs=131.1

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +|||+|.+..+|.-.+   .+++|+.|+|++|.|+-......     .--+|++|+||.|+++ .+|..+..|+.|+.|+
T Consensus       227 vDlS~N~Lp~vPecly---~l~~LrrLNLS~N~iteL~~~~~-----~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy  297 (1255)
T KOG0444|consen  227 VDLSENNLPIVPECLY---KLRNLRRLNLSGNKITELNMTEG-----EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLY  297 (1255)
T ss_pred             ccccccCCCcchHHHh---hhhhhheeccCcCceeeeeccHH-----HHhhhhhhccccchhc-cchHHHhhhHHHHHHH
Confidence            6999999999998655   68899999999999997654432     2567899999999999 8999999999999999


Q ss_pred             ccCCCCCC-CCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCC-CCCcCCccccCCCCC
Q 026180           82 LSTNSLQG-HIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQ-FNTFGKGSFDGNPGL  159 (242)
Q Consensus        82 L~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~-~~~~~~~~~~~n~~~  159 (242)
                      +.+|+++. -+|+.++.+.+|+.+..++|.+. ..|..+..|+.|+.|.|+.|.+- .+|+.+. +..+..+++..||.+
T Consensus       298 ~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  298 ANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             hccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence            99999853 47888999999999999999998 88999999999999999999987 6777763 556777889999987


Q ss_pred             CCCCC
Q 026180          160 CGQPL  164 (242)
Q Consensus       160 c~~~~  164 (242)
                      .-.|-
T Consensus       376 VMPPK  380 (1255)
T KOG0444|consen  376 VMPPK  380 (1255)
T ss_pred             cCCCC
Confidence            75544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.29  E-value=1.4e-13  Score=115.65  Aligned_cols=154  Identities=21%  Similarity=0.249  Sum_probs=127.1

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +|=++-.+++||...     .+.-+.+.|..|.|+.++.+.|..    ++.|+.||||+|+|+.+.|++|.++.++..|-
T Consensus        51 VdCr~~GL~eVP~~L-----P~~tveirLdqN~I~~iP~~aF~~----l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lv  121 (498)
T KOG4237|consen   51 VDCRGKGLTEVPANL-----PPETVEIRLDQNQISSIPPGAFKT----LHRLRRLDLSKNNISFIAPDAFKGLASLLSLV  121 (498)
T ss_pred             EEccCCCcccCcccC-----CCcceEEEeccCCcccCChhhccc----hhhhceecccccchhhcChHhhhhhHhhhHHH
Confidence            345666788888743     226777899999999998887766    88999999999999999999999999988876


Q ss_pred             ccC-CCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC--CCCCcCCccccCCCC
Q 026180           82 LST-NSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK--QFNTFGKGSFDGNPG  158 (242)
Q Consensus        82 L~~-n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~--~~~~~~~~~~~~n~~  158 (242)
                      +-+ |+|+....+.|.++.+|+.|.+.-|++.-...+.|..+++|..|.+-.|.+. .++...  .......+..+.||+
T Consensus       122 lyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~  200 (498)
T KOG4237|consen  122 LYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPF  200 (498)
T ss_pred             hhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcc
Confidence            555 9999777788999999999999999999888889999999999999999988 455432  234456677889999


Q ss_pred             CCCCCCC
Q 026180          159 LCGQPLS  165 (242)
Q Consensus       159 ~c~~~~~  165 (242)
                      .|+|.+.
T Consensus       201 icdCnL~  207 (498)
T KOG4237|consen  201 ICDCNLP  207 (498)
T ss_pred             ccccccc
Confidence            9999776

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.24  E-value=2e-13  Score=115.09  Aligned_cols=148  Identities=27%  Similarity=0.310  Sum_probs=90.6

Q ss_pred             cccCCCCCcccCCCCCCCCCCCC-CcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPA-LTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL   80 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L   80 (242)
                      +|++.|+|.++|...-.   +.. ++.+.++.|.+.+.+.     ..+.++.|+.|+|++|-+. .+|..++.+-.|+.|
T Consensus       393 VnfskNqL~elPk~L~~---lkelvT~l~lsnn~isfv~~-----~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~L  463 (565)
T KOG0472|consen  393 VNFSKNQLCELPKRLVE---LKELVTDLVLSNNKISFVPL-----ELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTL  463 (565)
T ss_pred             EecccchHhhhhhhhHH---HHHHHHHHHhhcCccccchH-----HHHhhhcceeeecccchhh-hcchhhhhhhhhhee
Confidence            45666666666654321   222 2234555555554432     2234667777777777777 677777777777777


Q ss_pred             eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCCCC
Q 026180           81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGL  159 (242)
Q Consensus        81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~  159 (242)
                      |++.|++. .+|.....+..++.+-.++|++....|+.+.++.+|..||+.+|.+....|.-+...++..+.++|||+-
T Consensus       464 nlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  464 NLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            77777766 6666555555555555555666655555566777777777777777744444445666666777777653

>PLN03150 hypothetical protein; Provisional

Probab=99.23  E-value=1.6e-11  Score=113.11  Aligned_cols=112  Identities=34%  Similarity=0.462  Sum_probs=95.5

Q ss_pred             CcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEE
Q 026180           25 LTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESL  104 (242)
Q Consensus        25 L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  104 (242)
                      ++.|+|++|.+..    ..+.....+++|+.|+|++|.++|.+|..++.+++|+.|+|++|++++.+|..++.+++|+.|
T Consensus       420 v~~L~L~~n~L~g----~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L  495 (623)
T PLN03150        420 IDGLGLDNQGLRG----FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL  495 (623)
T ss_pred             EEEEECCCCCccc----cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence            6677888777752    222233457899999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCCCCcccccCC-CcccEEecCCCccccCCC
Q 026180          105 DLSNNKLSGQIPQQLGEL-TTLEVFDVSDNLLTGPIP  140 (242)
Q Consensus       105 ~l~~N~l~~~~p~~~~~l-~~L~~L~l~~N~l~~~~p  140 (242)
                      +|++|.++|.+|..+... .++..+++.+|...+..|
T Consensus       496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             ECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            999999999999988764 467789999998776554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.20  E-value=6.6e-12  Score=96.94  Aligned_cols=118  Identities=22%  Similarity=0.244  Sum_probs=52.7

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhc-cCCCCCCEE
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSI-ANLKGLRTL   80 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~-~~l~~L~~L   80 (242)
                      ++|++|+|+.|.... .  .+.+|+.|++++|.|..++. .     ..++.|++|++++|.|+. +++.+ ..+++|+.|
T Consensus        24 L~L~~n~I~~Ie~L~-~--~l~~L~~L~Ls~N~I~~l~~-l-----~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   24 LNLRGNQISTIENLG-A--TLDKLEVLDLSNNQITKLEG-L-----PGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQEL   93 (175)
T ss_dssp             ------------S---T--T-TT--EEE-TTS--S--TT----------TT--EEE--SS---S--CHHHHHH-TT--EE
T ss_pred             ccccccccccccchh-h--hhcCCCEEECCCCCCccccC-c-----cChhhhhhcccCCCCCCc-cccchHHhCCcCCEE
Confidence            789999999998643 2  57899999999999997753 1     237899999999999995 44444 468999999


Q ss_pred             eccCCCCCCCCC-cccCCCCCCCEEeCCCCCCCCCCcc----cccCCCcccEEec
Q 026180           81 NLSTNSLQGHIP-PTLGNLIVLESLDLSNNKLSGQIPQ----QLGELTTLEVFDV  130 (242)
Q Consensus        81 ~L~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~----~~~~l~~L~~L~l  130 (242)
                      ++++|+|....- ..+..+++|+.|++.+|.++. .+.    .+..+|+|+.||-
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETT
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCC
Confidence            999999974322 456789999999999999983 343    3667899998863

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.16  E-value=3.7e-12  Score=104.13  Aligned_cols=124  Identities=24%  Similarity=0.300  Sum_probs=81.1

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +|||+|.|+.|....-   -.|.++.|++++|.|..+++-.      .+++|+.||||+|.++ .+...-..+.++.+|.
T Consensus       289 lDLS~N~I~~iDESvK---L~Pkir~L~lS~N~i~~v~nLa------~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  289 LDLSGNLITQIDESVK---LAPKLRRLILSQNRIRTVQNLA------ELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK  358 (490)
T ss_pred             ccccccchhhhhhhhh---hccceeEEeccccceeeehhhh------hcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence            5777777777776553   3557777777777777665422      2677777777777777 4444445667777777


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCC-cccccCCCcccEEecCCCcccc
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQI-PQQLGELTTLEVFDVSDNLLTG  137 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~~  137 (242)
                      |+.|.|. .+ ..+..+-+|..||+++|+|.... -..++++|.|+++.|.+|++.+
T Consensus       359 La~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  359 LAQNKIE-TL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhhHh-hh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            7777775 22 23555666777777777776321 1246677777777777777763

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.16  E-value=3.7e-11  Score=111.73  Aligned_cols=108  Identities=22%  Similarity=0.253  Sum_probs=54.4

Q ss_pred             CCcccceeeeEEEeecCCch------------hhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCC
Q 026180           24 ALTYYGFSYYSLTLSNKGTE------------LEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHI   91 (242)
Q Consensus        24 ~L~~L~l~~n~l~~~~~~~~------------~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~   91 (242)
                      +|++|++++|.|..++....            ..++..+.+|+.|++++|.|+ .+|..   .++|+.|++++|+++ .+
T Consensus       343 ~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sI  417 (788)
T PRK15387        343 GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SL  417 (788)
T ss_pred             ccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CC
Confidence            67777777777664332100            000111234455555555555 23322   234555555555555 33


Q ss_pred             CcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCC
Q 026180           92 PPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP  140 (242)
Q Consensus        92 p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  140 (242)
                      |..+   .+|+.|++++|+++ .+|..+..+++|+.+++++|++++..|
T Consensus       418 P~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~  462 (788)
T PRK15387        418 PMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL  462 (788)
T ss_pred             Ccch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence            4321   24555566666665 456666666666666666666665544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.15  E-value=3.8e-12  Score=107.50  Aligned_cols=125  Identities=28%  Similarity=0.366  Sum_probs=108.3

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +++++|.|.-+|... +  .+++|+.|++++|-+...+...+     .+..|++|+++.|++. .+|...-.+..++.+-
T Consensus       417 l~lsnn~isfv~~~l-~--~l~kLt~L~L~NN~Ln~LP~e~~-----~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtll  487 (565)
T KOG0472|consen  417 LVLSNNKISFVPLEL-S--QLQKLTFLDLSNNLLNDLPEEMG-----SLVRLQTLNLSFNRFR-MLPECLYELQTLETLL  487 (565)
T ss_pred             HHhhcCccccchHHH-H--hhhcceeeecccchhhhcchhhh-----hhhhhheecccccccc-cchHHHhhHHHHHHHH
Confidence            467888888888654 3  68899999999998886654332     3566999999999999 8999888888888888


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccc
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT  136 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~  136 (242)
                      .++|++....|+.+.+|.+|..|||.+|.+. .+|..++++.+|++|.+.+|+|.
T Consensus       488 as~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  488 ASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            8889999777777999999999999999999 78889999999999999999998

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.12  E-value=3.8e-12  Score=116.81  Aligned_cols=106  Identities=29%  Similarity=0.389  Sum_probs=75.8

Q ss_pred             hcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEe
Q 026180           50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD  129 (242)
Q Consensus        50 ~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~  129 (242)
                      +..|+.|+|++|++.......+.++..|+.|+||+|+++ .+|+....+..|+.|...+|++. ..| .+..++.|+.+|
T Consensus       382 ~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD  458 (1081)
T KOG0618|consen  382 FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD  458 (1081)
T ss_pred             ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence            556777777777777444445567777777777777777 77777777777777777777777 566 577788888888


Q ss_pred             cCCCcccc-CCCCCCCCCCcCCccccCCCC
Q 026180          130 VSDNLLTG-PIPRGKQFNTFGKGSFDGNPG  158 (242)
Q Consensus       130 l~~N~l~~-~~p~~~~~~~~~~~~~~~n~~  158 (242)
                      ++.|.++. .+|......++..+++.||++
T Consensus       459 lS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  459 LSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             cccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            88888763 445444446777788888875

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.12  E-value=9.1e-11  Score=109.33  Aligned_cols=93  Identities=24%  Similarity=0.298  Sum_probs=57.0

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      ++|++|+|+.+|...+     .+|+.|++++|.+..++.       ..+..|+.|+|++|.+. .+|..+.  .+|+.|+
T Consensus       204 L~Ls~N~LtsLP~~l~-----~nL~~L~Ls~N~LtsLP~-------~l~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~  268 (754)
T PRK15370        204 LILDNNELKSLPENLQ-----GNIKTLYANSNQLTSIPA-------TLPDTIQEMELSINRIT-ELPERLP--SALQSLD  268 (754)
T ss_pred             EEecCCCCCcCChhhc-----cCCCEEECCCCccccCCh-------hhhccccEEECcCCccC-cCChhHh--CCCCEEE
Confidence            5667777777765432     367777777776654332       12345667777777766 4555443  4677777


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLS  112 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  112 (242)
                      +++|+++ .+|..+.  .+|+.|++++|+++
T Consensus       269 Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        269 LFHNKIS-CLPENLP--EELRYLSVYDNSIR  296 (754)
T ss_pred             CcCCccC-ccccccC--CCCcEEECCCCccc
Confidence            7777776 4555443  36777777777766

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.08  E-value=1.6e-10  Score=107.56  Aligned_cols=35  Identities=26%  Similarity=0.327  Sum_probs=18.6

Q ss_pred             cccEEecCCCccccCCCCCC-CCCCcCCccccCCCCC
Q 026180          124 TLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNPGL  159 (242)
Q Consensus       124 ~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~~~  159 (242)
                      +|+.|++++|+++ .+|... .+..+..+.+.+|+..
T Consensus       423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        423 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             hhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence            3444555555555 344432 2445556667777754

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.08  E-value=1.1e-10  Score=108.74  Aligned_cols=72  Identities=22%  Similarity=0.283  Sum_probs=33.4

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      ++|++|+|+.+|...+     .+|+.|++++|.+..++..       .+.+|+.|++++|+++ .+|..+.  ++|+.|+
T Consensus       225 L~Ls~N~LtsLP~~l~-----~~L~~L~Ls~N~L~~LP~~-------l~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~  289 (754)
T PRK15370        225 LYANSNQLTSIPATLP-----DTIQEMELSINRITELPER-------LPSALQSLDLFHNKIS-CLPENLP--EELRYLS  289 (754)
T ss_pred             EECCCCccccCChhhh-----ccccEEECcCCccCcCChh-------HhCCCCEEECcCCccC-ccccccC--CCCcEEE
Confidence            4566666666665321     2455555555555432211       1234455555555544 2333321  2444444


Q ss_pred             ccCCCCC
Q 026180           82 LSTNSLQ   88 (242)
Q Consensus        82 L~~n~l~   88 (242)
                      +++|+++
T Consensus       290 Ls~N~Lt  296 (754)
T PRK15370        290 VYDNSIR  296 (754)
T ss_pred             CCCCccc
Confidence            4444444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.04  E-value=1.2e-10  Score=74.33  Aligned_cols=59  Identities=42%  Similarity=0.520  Sum_probs=32.1

Q ss_pred             CccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCC
Q 026180           52 LITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNK  110 (242)
Q Consensus        52 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~  110 (242)
                      +|+.|++++|+++...+..|..+++|++|++++|.++...|..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34555555555554444455555555555555555554444455555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.01  E-value=2.1e-10  Score=73.25  Aligned_cols=61  Identities=41%  Similarity=0.578  Sum_probs=56.6

Q ss_pred             CCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCcc
Q 026180           75 KGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLL  135 (242)
Q Consensus        75 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l  135 (242)
                      ++|++|++++|+++...+..|..+++|++|++++|.++...|+.|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4789999999999977778899999999999999999988888999999999999999975

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.97  E-value=1.3e-11  Score=113.32  Aligned_cols=149  Identities=24%  Similarity=0.300  Sum_probs=112.7

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHH---------------------HhhcCccEEEccC
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYE---------------------KLSNLITAIILSN   60 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~---------------------~~~~~L~~L~Ls~   60 (242)
                      +++.+|.++.+|+..   .++.+|+.|++..|.|....+..+....                     ..+..|+.|++.+
T Consensus       292 l~~~~nel~yip~~l---e~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan  368 (1081)
T KOG0618|consen  292 LSAAYNELEYIPPFL---EGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN  368 (1081)
T ss_pred             HHhhhhhhhhCCCcc---cccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc
Confidence            345566666666543   1366777777777766655543222111                     1245578889999


Q ss_pred             CCCccCcchhccCCCCCCEEeccCCCCCCCCCc-ccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCC
Q 026180           61 NSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPI  139 (242)
Q Consensus        61 n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~  139 (242)
                      |.++...-..+.++..|+.|+|++|+++ .+|+ .+.++..|+.|+||+|+++ .+|+.+..++.|++|...+|++. ..
T Consensus       369 N~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~f  445 (1081)
T KOG0618|consen  369 NHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SF  445 (1081)
T ss_pred             Ccccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ec
Confidence            9999888788899999999999999999 5554 5788999999999999999 88999999999999999999998 66


Q ss_pred             CCCCCCCCcCCccccCC
Q 026180          140 PRGKQFNTFGKGSFDGN  156 (242)
Q Consensus       140 p~~~~~~~~~~~~~~~n  156 (242)
                      |+..++..+..++++.|
T Consensus       446 Pe~~~l~qL~~lDlS~N  462 (1081)
T KOG0618|consen  446 PELAQLPQLKVLDLSCN  462 (1081)
T ss_pred             hhhhhcCcceEEecccc
Confidence            77666666666666555

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.87  E-value=3.7e-10  Score=95.57  Aligned_cols=86  Identities=30%  Similarity=0.500  Sum_probs=44.8

Q ss_pred             cCccEEEccCCCCccC----cchhccCCCCCCEEeccCCCCCCC----CCcccCCCCCCCEEeCCCCCCCCC----Cccc
Q 026180           51 NLITAIILSNNSFVGE----IPTSIANLKGLRTLNLSTNSLQGH----IPPTLGNLIVLESLDLSNNKLSGQ----IPQQ  118 (242)
Q Consensus        51 ~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~  118 (242)
                      ++|+.|++++|.+++.    .+..+..+..|++|++++|.+++.    ++..+...++|+.|++++|.+++.    ++..
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            4556666666666532    223344455566666666665532    222233445666666666665532    2223


Q ss_pred             ccCCCcccEEecCCCccc
Q 026180          119 LGELTTLEVFDVSDNLLT  136 (242)
Q Consensus       119 ~~~l~~L~~L~l~~N~l~  136 (242)
                      +..+++|++|++++|.++
T Consensus       217 ~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         217 LASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             hcccCCCCEEecCCCcCc
Confidence            445556666666666655

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=98.86  E-value=1.3e-08  Score=100.12  Aligned_cols=128  Identities=22%  Similarity=0.213  Sum_probs=79.3

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +++++|.++.+|...    .+.+|+.|++.+|.+.....+..     .+++|+.|+|+++.....+|. ++.+++|+.|+
T Consensus       594 L~~~~~~l~~lP~~f----~~~~L~~L~L~~s~l~~L~~~~~-----~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~  663 (1153)
T PLN03210        594 LRWDKYPLRCMPSNF----RPENLVKLQMQGSKLEKLWDGVH-----SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLK  663 (1153)
T ss_pred             EEecCCCCCCCCCcC----CccCCcEEECcCccccccccccc-----cCCCCCEEECCCCCCcCcCCc-cccCCcccEEE
Confidence            455666677777643    45677777777777766544331     266777777776654335553 56677777777


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP  140 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  140 (242)
                      +++|.....+|..+..+++|+.|++++|.....+|..+ ++++|+.|++++|...+..|
T Consensus       664 L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p  721 (1153)
T PLN03210        664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFP  721 (1153)
T ss_pred             ecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccc
Confidence            77765555677777777777777777754444555544 45666666666654443333

syringae 6; Provisional

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.85  E-value=2.2e-10  Score=93.91  Aligned_cols=128  Identities=25%  Similarity=0.285  Sum_probs=100.4

Q ss_pred             CCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCC
Q 026180           21 RYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIV  100 (242)
Q Consensus        21 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  100 (242)
                      .|..|+.||+++|.|+.++..     .+..+.++.|++|+|+|. .+.. +..+++|+.|||++|.++ .+-.+-..+.+
T Consensus       282 TWq~LtelDLS~N~I~~iDES-----vKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN  353 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQIDES-----VKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGN  353 (490)
T ss_pred             hHhhhhhccccccchhhhhhh-----hhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcC
Confidence            677899999999999986643     356889999999999998 4433 778999999999999998 77777778889


Q ss_pred             CCEEeCCCCCCCCCCcccccCCCcccEEecCCCcccc--CCCCCCCCCCcCCccccCCCC
Q 026180          101 LESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTG--PIPRGKQFNTFGKGSFDGNPG  158 (242)
Q Consensus       101 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~--~~p~~~~~~~~~~~~~~~n~~  158 (242)
                      ++.|.|+.|.+.. + ..+..+-+|..||+.+|++..  .+...+.+..+..+.+.+||.
T Consensus       354 IKtL~La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  354 IKTLKLAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             EeeeehhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            9999999999873 2 356778899999999999873  122233445556667777874

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.85  E-value=1.3e-10  Score=102.14  Aligned_cols=122  Identities=30%  Similarity=0.410  Sum_probs=64.5

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +||+.|+++.+|..+|.    --|+.|-+++|++...+....     ....|..||.+.|.+. .+|..++.+.+|..|.
T Consensus       126 l~ls~NqlS~lp~~lC~----lpLkvli~sNNkl~~lp~~ig-----~~~tl~~ld~s~nei~-slpsql~~l~slr~l~  195 (722)
T KOG0532|consen  126 LDLSSNQLSHLPDGLCD----LPLKVLIVSNNKLTSLPEEIG-----LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLN  195 (722)
T ss_pred             hhhccchhhcCChhhhc----CcceeEEEecCccccCCcccc-----cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHH
Confidence            34444444444444321    134444444444444333322     1333444444444444 3444444455555555


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccc
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT  136 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~  136 (242)
                      +..|++. .+|..+..| .|..||++.|+++ .+|-.|..+..|++|.|.+|+++
T Consensus       196 vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  196 VRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             Hhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            5555555 444444432 3566777777777 66777777777778878777777

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.81  E-value=4.3e-10  Score=98.84  Aligned_cols=144  Identities=26%  Similarity=0.382  Sum_probs=118.2

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +.|..|.|..||....   .+..|++|+++.|.+...+..+.      .-.|+.|.+++|+++ .+|..++.+..|..||
T Consensus       103 liLy~n~~r~ip~~i~---~L~~lt~l~ls~NqlS~lp~~lC------~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld  172 (722)
T KOG0532|consen  103 LILYHNCIRTIPEAIC---NLEALTFLDLSSNQLSHLPDGLC------DLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLD  172 (722)
T ss_pred             HHHHhccceecchhhh---hhhHHHHhhhccchhhcCChhhh------cCcceeEEEecCccc-cCCcccccchhHHHhh
Confidence            3578899999998653   67789999999999987665543      335789999999999 8899899999999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNPGL  159 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~~~  159 (242)
                      .+.|++. .+|..++.+.+|+.|++..|++. .+|..+..++ |..||++.|+++ .+|... ....++.+.+..||..
T Consensus       173 ~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  173 VSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            9999999 88888999999999999999998 6677788655 899999999999 666543 4556667777888753

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.79  E-value=3e-09  Score=93.00  Aligned_cols=144  Identities=28%  Similarity=0.429  Sum_probs=73.3

Q ss_pred             cccCCCCCcccCCCCCCCCCC-CCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180            2 KDVNANNLTYLQDPLLGPVRY-PALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL   80 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L   80 (242)
                      +++.+|.|++|+....   .. ++|+.|+++.|.+....     ...+.++.|+.|++++|.++ .+|...+.++.|+.|
T Consensus       121 L~l~~n~i~~i~~~~~---~~~~nL~~L~l~~N~i~~l~-----~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L  191 (394)
T COG4886         121 LDLDNNNITDIPPLIG---LLKSNLKELDLSDNKIESLP-----SPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL  191 (394)
T ss_pred             EecCCcccccCccccc---cchhhcccccccccchhhhh-----hhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence            4556666666665441   12 25666666666665432     11223555555555555555 344433344555555


Q ss_pred             eccCCCCCCCCCcc-----------------------cCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCcccc
Q 026180           81 NLSTNSLQGHIPPT-----------------------LGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTG  137 (242)
Q Consensus        81 ~L~~n~l~~~~p~~-----------------------~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  137 (242)
                      ++++|+++ .+|..                       +..+.++..+.+.+|++. ..+..++.+++++.|++++|+++ 
T Consensus       192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-  268 (394)
T COG4886         192 DLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-  268 (394)
T ss_pred             eccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-
Confidence            55555555 33333                       333344444444444444 22455566666777777777766 


Q ss_pred             CCCCCCCCCCcCCccccCCC
Q 026180          138 PIPRGKQFNTFGKGSFDGNP  157 (242)
Q Consensus       138 ~~p~~~~~~~~~~~~~~~n~  157 (242)
                      .++.......+..+.+.+|.
T Consensus       269 ~i~~~~~~~~l~~L~~s~n~  288 (394)
T COG4886         269 SISSLGSLTNLRELDLSGNS  288 (394)
T ss_pred             ccccccccCccCEEeccCcc
Confidence            33333344555556666653

>PLN03210 Resistant to P

Probab=98.70  E-value=6.1e-08  Score=95.45  Aligned_cols=106  Identities=21%  Similarity=0.307  Sum_probs=79.9

Q ss_pred             hcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEe
Q 026180           50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD  129 (242)
Q Consensus        50 ~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~  129 (242)
                      +.+|+.|+|++|.+. .++..+..+++|+.|+|+++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|+
T Consensus       610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence            457778888888877 5677777888888888887765446664 77788888888888776667888888889999999


Q ss_pred             cCCCccccCCCCCCCCCCcCCccccCCC
Q 026180          130 VSDNLLTGPIPRGKQFNTFGKGSFDGNP  157 (242)
Q Consensus       130 l~~N~l~~~~p~~~~~~~~~~~~~~~n~  157 (242)
                      +++|.....+|....+..+..+.+.|+.
T Consensus       688 L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        688 MSRCENLEILPTGINLKSLYRLNLSGCS  715 (1153)
T ss_pred             CCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence            9887665677776555666666666653

syringae 6; Provisional

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.69  E-value=7.7e-09  Score=90.42  Aligned_cols=122  Identities=33%  Similarity=0.473  Sum_probs=96.2

Q ss_pred             cccCCCCC-cccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhc-CccEEEccCCCCccCcchhccCCCCCCE
Q 026180            2 KDVNANNL-TYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSN-LITAIILSNNSFVGEIPTSIANLKGLRT   79 (242)
Q Consensus         2 ~dLs~N~i-~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~~~p~~~~~l~~L~~   79 (242)
                      ++++.|++ ..+....    .++.++.|++..|.+..+.....     .++ +|+.|++++|.+. .+|..+..++.|+.
T Consensus        98 l~~~~~~~~~~~~~~~----~~~~l~~L~l~~n~i~~i~~~~~-----~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~  167 (394)
T COG4886          98 LDLNLNRLRSNISELL----ELTNLTSLDLDNNNITDIPPLIG-----LLKSNLKELDLSDNKIE-SLPSPLRNLPNLKN  167 (394)
T ss_pred             eeccccccccCchhhh----cccceeEEecCCcccccCccccc-----cchhhcccccccccchh-hhhhhhhccccccc
Confidence            45666666 3333322    56789999999999987765433     243 8999999999999 67777889999999


Q ss_pred             EeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCcc
Q 026180           80 LNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLL  135 (242)
Q Consensus        80 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l  135 (242)
                      |++++|+++ .+|...+.++.|+.|++++|+++ .+|........|+.+.+++|.+
T Consensus       168 L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~  221 (394)
T COG4886         168 LDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSI  221 (394)
T ss_pred             cccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcc
Confidence            999999999 77776668899999999999999 6777666666789999999953

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.68  E-value=2.5e-09  Score=90.45  Aligned_cols=114  Identities=23%  Similarity=0.224  Sum_probs=79.8

Q ss_pred             CCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccC----cchhccCCCCCCEEeccCCCCCCCC----Ccc
Q 026180           23 PALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGE----IPTSIANLKGLRTLNLSTNSLQGHI----PPT   94 (242)
Q Consensus        23 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~L~~n~l~~~~----p~~   94 (242)
                      ++|+.|++++|.+...........+..+..|+.|++++|.+++.    ++..+..+++|+.|++++|.+++..    ...
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            67788888877766322112222333456899999999999843    3444556679999999999987443    334


Q ss_pred             cCCCCCCCEEeCCCCCCCCCCccccc-----CCCcccEEecCCCccc
Q 026180           95 LGNLIVLESLDLSNNKLSGQIPQQLG-----ELTTLEVFDVSDNLLT  136 (242)
Q Consensus        95 ~~~l~~L~~L~l~~N~l~~~~p~~~~-----~l~~L~~L~l~~N~l~  136 (242)
                      +..+++|+.|++++|.++......+.     ..+.|+.|++++|.++
T Consensus       217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence            66778999999999998853222222     2478999999999886

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=5.2e-09  Score=89.48  Aligned_cols=131  Identities=22%  Similarity=0.238  Sum_probs=76.9

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCc--------------
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEI--------------   67 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~--------------   67 (242)
                      +|||+|-+..+..-.--...+|+|+.|+++.|.+..........   .++.|+.|.|++|+++...              
T Consensus       151 LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~---~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L  227 (505)
T KOG3207|consen  151 LDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL---LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVL  227 (505)
T ss_pred             ecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh---hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHh
Confidence            67888888775544322238899999999999887654433222   3556666666666665321              


Q ss_pred             -----------chhccCCCCCCEEeccCCCCCCCCC--cccCCCCCCCEEeCCCCCCCCC-Cccc-----ccCCCcccEE
Q 026180           68 -----------PTSIANLKGLRTLNLSTNSLQGHIP--PTLGNLIVLESLDLSNNKLSGQ-IPQQ-----LGELTTLEVF  128 (242)
Q Consensus        68 -----------p~~~~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~l~~N~l~~~-~p~~-----~~~l~~L~~L  128 (242)
                                 ......+..|+.|||++|++- ..+  ...+.++.|..|+++.+.++.. .|+.     ...+++|++|
T Consensus       228 ~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L  306 (505)
T KOG3207|consen  228 YLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYL  306 (505)
T ss_pred             hhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceee
Confidence                       111223445556666666654 222  2345566666666666666533 2332     2345777777


Q ss_pred             ecCCCccc
Q 026180          129 DVSDNLLT  136 (242)
Q Consensus       129 ~l~~N~l~  136 (242)
                      ++..|++.
T Consensus       307 ~i~~N~I~  314 (505)
T KOG3207|consen  307 NISENNIR  314 (505)
T ss_pred             ecccCccc
Confidence            77777775

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.50  E-value=1.2e-09  Score=79.76  Aligned_cols=109  Identities=25%  Similarity=0.361  Sum_probs=83.8

Q ss_pred             cCccEEEccCCCCccCcchhcc-CCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEe
Q 026180           51 NLITAIILSNNSFVGEIPTSIA-NLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD  129 (242)
Q Consensus        51 ~~L~~L~Ls~n~i~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~  129 (242)
                      ..|+..+|++|.+. ..|+.|. .++.++.+++++|+|+ .+|..+..++.|+.|+++.|.+. ..|..+..+.+|-.|+
T Consensus        53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD  129 (177)
T ss_pred             ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence            45777899999999 5555554 5568999999999999 88888999999999999999998 7788888899999999


Q ss_pred             cCCCccccCCCCCCCCCCcCCc-cccCCCCCCCCC
Q 026180          130 VSDNLLTGPIPRGKQFNTFGKG-SFDGNPGLCGQP  163 (242)
Q Consensus       130 l~~N~l~~~~p~~~~~~~~~~~-~~~~n~~~c~~~  163 (242)
                      ..+|.+. .+|......+...+ .+..+|+--+|+
T Consensus       130 s~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~  163 (177)
T KOG4579|consen  130 SPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK  163 (177)
T ss_pred             CCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence            9999887 66655433333322 344455544444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.42  E-value=5e-09  Score=94.72  Aligned_cols=131  Identities=28%  Similarity=0.336  Sum_probs=93.3

Q ss_pred             CCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCC
Q 026180           21 RYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIV  100 (242)
Q Consensus        21 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  100 (242)
                      .|..|...+.++|.+...+.     ...+++.++.|+|++|+++...  .+..++.|++|||++|.+. .+|..-..-..
T Consensus       162 ~Wn~L~~a~fsyN~L~~mD~-----SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~  233 (1096)
T KOG1859|consen  162 VWNKLATASFSYNRLVLMDE-----SLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK  233 (1096)
T ss_pred             hhhhHhhhhcchhhHHhHHH-----HHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh
Confidence            56677777888888776443     2345788899999999988443  6788899999999999998 55543222234


Q ss_pred             CCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCC--CCCCCCCcCCccccCCCCCCC
Q 026180          101 LESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP--RGKQFNTFGKGSFDGNPGLCG  161 (242)
Q Consensus       101 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p--~~~~~~~~~~~~~~~n~~~c~  161 (242)
                      |+.|++.+|.++..  ..+.++.+|+.||++.|-+.+--.  .-+.+..+..+.+.|||..|.
T Consensus       234 L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  234 LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            88999999988843  357888899999999998874211  112234455667888888774

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.37  E-value=2.6e-08  Score=72.91  Aligned_cols=134  Identities=23%  Similarity=0.278  Sum_probs=78.7

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +||+.-+|-.|++....-.+.-.|+..++++|.+...+..    +...++.+++|+|++|.|+ .+|..+..++.|+.|+
T Consensus        32 ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~k----ft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   32 LDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKK----FTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN  106 (177)
T ss_pred             cccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHH----Hhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence            3555555555554433222334555566666666643322    2233556677777777777 6777777777777777


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG  142 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~  142 (242)
                      ++.|.+. ..|.-+..+.++..|+..+|.+. .+|-.+---...-..+++++++.+..+..
T Consensus       107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~k  165 (177)
T KOG4579|consen  107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKK  165 (177)
T ss_pred             cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccc
Confidence            7777777 66666666777777777777776 34433221122223344666666555543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=1.7e-07  Score=80.41  Aligned_cols=112  Identities=23%  Similarity=0.327  Sum_probs=79.6

Q ss_pred             CCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCc-chhccCCCCCCEEeccCCCCCCCC-Ccc----
Q 026180           21 RYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEI-PTSIANLKGLRTLNLSTNSLQGHI-PPT----   94 (242)
Q Consensus        21 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~-p~~~~~l~~L~~L~L~~n~l~~~~-p~~----   94 (242)
                      .||+|+.|++..|....+.    ....+.+..|+.|||++|++-... -...+.++.|..|+++.+.+.... |+.    
T Consensus       220 ~fPsl~~L~L~~N~~~~~~----~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~  295 (505)
T KOG3207|consen  220 TFPSLEVLYLEANEIILIK----ATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLD  295 (505)
T ss_pred             hCCcHHHhhhhccccccee----cchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchh
Confidence            6777888888777432222    222345778999999999987332 134578899999999999987532 332    


Q ss_pred             -cCCCCCCCEEeCCCCCCCCCCc--ccccCCCcccEEecCCCcccc
Q 026180           95 -LGNLIVLESLDLSNNKLSGQIP--QQLGELTTLEVFDVSDNLLTG  137 (242)
Q Consensus        95 -~~~l~~L~~L~l~~N~l~~~~p--~~~~~l~~L~~L~l~~N~l~~  137 (242)
                       .-.+++|++|++..|++. ..+  +.+..+++|+.|....|.++.
T Consensus       296 kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  296 KTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             hhcccccceeeecccCccc-cccccchhhccchhhhhhcccccccc
Confidence             356799999999999996 323  235556788999988999874

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.32  E-value=2.8e-07  Score=87.67  Aligned_cols=122  Identities=30%  Similarity=0.359  Sum_probs=97.1

Q ss_pred             cCCCCCcccCCCCCCCCCCCCCcccceeeeE--EEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            4 VNANNLTYLQDPLLGPVRYPALTYYGFSYYS--LTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         4 Ls~N~i~~l~~~~~~~~~~~~L~~L~l~~n~--l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +-+|.+..++...    ..+.|+.|-+-.|.  +..    ....++..++.|+.|||++|.--+.+|..++.|-+|++|+
T Consensus       530 ~~~~~~~~~~~~~----~~~~L~tLll~~n~~~l~~----is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  530 LMNNKIEHIAGSS----ENPKLRTLLLQRNSDWLLE----ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD  601 (889)
T ss_pred             EeccchhhccCCC----CCCccceEEEeecchhhhh----cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence            4567777777765    45578888877775  332    2344566689999999998877778999999999999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCc
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNL  134 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~  134 (242)
                      +++..+. .+|..++.+..|.+||+..+.-...+|.....+++|++|.+-.-.
T Consensus       602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            9999999 899999999999999999887766667777779999999886543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.16  E-value=2.2e-07  Score=81.90  Aligned_cols=98  Identities=28%  Similarity=0.364  Sum_probs=42.7

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +++..|+|..|... ..  .+++|++|+++.|.|..+.....      +..|+.|++++|.|+. +.. +..+..|+.++
T Consensus       100 l~l~~n~i~~i~~~-l~--~~~~L~~L~ls~N~I~~i~~l~~------l~~L~~L~l~~N~i~~-~~~-~~~l~~L~~l~  168 (414)
T KOG0531|consen  100 LDLYDNKIEKIENL-LS--SLVNLQVLDLSFNKITKLEGLST------LTLLKELNLSGNLISD-ISG-LESLKSLKLLD  168 (414)
T ss_pred             eeccccchhhcccc-hh--hhhcchheeccccccccccchhh------ccchhhheeccCcchh-ccC-Cccchhhhccc
Confidence            34455555555541 01  34455555555555554332211      3334555555555542 111 22345555555


Q ss_pred             ccCCCCCCCCC-cccCCCCCCCEEeCCCCCC
Q 026180           82 LSTNSLQGHIP-PTLGNLIVLESLDLSNNKL  111 (242)
Q Consensus        82 L~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l  111 (242)
                      +++|++....+ . ...+.+++.+++.+|.+
T Consensus       169 l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  169 LSYNRIVDIENDE-LSELISLEELDLGGNSI  198 (414)
T ss_pred             CCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence            55555542222 1 23444444444554444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.13  E-value=5.4e-07  Score=79.44  Aligned_cols=121  Identities=24%  Similarity=0.245  Sum_probs=92.8

Q ss_pred             ccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEec
Q 026180            3 DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNL   82 (242)
Q Consensus         3 dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L   82 (242)
                      ++..|.|.++.+.. .  .+.+|+.|++.+|.|.-+...     ...+.+|+.|++++|.|+...+  +..++.|+.|++
T Consensus        78 ~l~~n~i~~~~~~l-~--~~~~l~~l~l~~n~i~~i~~~-----l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l  147 (414)
T KOG0531|consen   78 NLRQNLIAKILNHL-S--KLKSLEALDLYDNKIEKIENL-----LSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNL  147 (414)
T ss_pred             ccchhhhhhhhccc-c--cccceeeeeccccchhhcccc-----hhhhhcchheeccccccccccc--hhhccchhhhee
Confidence            46778888744422 2  778999999999999977653     2348899999999999996544  456777999999


Q ss_pred             cCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccc-ccCCCcccEEecCCCccc
Q 026180           83 STNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQ-LGELTTLEVFDVSDNLLT  136 (242)
Q Consensus        83 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~l~~L~~L~l~~N~l~  136 (242)
                      ++|.|+ .+.. +..+..|+.+++++|++...-+ . ...+.+++.+.+++|.+.
T Consensus       148 ~~N~i~-~~~~-~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  148 SGNLIS-DISG-LESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIR  199 (414)
T ss_pred             ccCcch-hccC-CccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchh
Confidence            999998 4433 5668999999999999985543 2 467788888888888876

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.13  E-value=4.4e-06  Score=65.12  Aligned_cols=85  Identities=25%  Similarity=0.255  Sum_probs=37.8

Q ss_pred             hcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCC-cccccCCCcccEE
Q 026180           50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQI-PQQLGELTTLEVF  128 (242)
Q Consensus        50 ~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L  128 (242)
                      .++...+||++|.+. .+ +.|..++.|.+|.|+.|+|+.+.|.--.-+++|+.|.|.+|+|...- -+.+..|++|+.|
T Consensus        41 ~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            334444555555444 11 22344555555555555555333332233344555555555544210 0123444555555


Q ss_pred             ecCCCccc
Q 026180          129 DVSDNLLT  136 (242)
Q Consensus       129 ~l~~N~l~  136 (242)
                      .+-+|+.+
T Consensus       119 tll~Npv~  126 (233)
T KOG1644|consen  119 TLLGNPVE  126 (233)
T ss_pred             eecCCchh
Confidence            55555443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.12  E-value=3.4e-06  Score=49.82  Aligned_cols=36  Identities=39%  Similarity=0.623  Sum_probs=18.3

Q ss_pred             CccEEEccCCCCccCcchhccCCCCCCEEeccCCCCC
Q 026180           52 LITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQ   88 (242)
Q Consensus        52 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~   88 (242)
                      +|+.|++++|+|+ .+|..+..+++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3455555555555 34444555555555555555554

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.09  E-value=3e-06  Score=50.05  Aligned_cols=36  Identities=50%  Similarity=0.774  Sum_probs=20.4

Q ss_pred             CCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCC
Q 026180           76 GLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLS  112 (242)
Q Consensus        76 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  112 (242)
                      +|++|++++|+|+ .+|+.+..+++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4566666666666 44445566666666666666655

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.97  E-value=4.6e-06  Score=79.53  Aligned_cols=115  Identities=24%  Similarity=0.349  Sum_probs=92.9

Q ss_pred             CCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCC--CccCcchhccCCCCCCEEeccCCCCCCCCCcccCCC
Q 026180           21 RYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNS--FVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNL   98 (242)
Q Consensus        21 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~--i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l   98 (242)
                      .+...+...+-.|.+..+.....      .+.|++|-+..|.  +....+..|..++.|..|||++|.=-+.+|..++.+
T Consensus       521 ~~~~~rr~s~~~~~~~~~~~~~~------~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L  594 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIEHIAGSSE------NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL  594 (889)
T ss_pred             chhheeEEEEeccchhhccCCCC------CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh
Confidence            44566777777777766554332      4468999999996  554556668889999999999988777999999999


Q ss_pred             CCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC
Q 026180           99 IVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG  142 (242)
Q Consensus        99 ~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~  142 (242)
                      .+|++|++++..+. .+|..+.++..|.+|++..+.....+|..
T Consensus       595 i~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i  637 (889)
T KOG4658|consen  595 VHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGI  637 (889)
T ss_pred             hhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccch
Confidence            99999999999999 88999999999999999988765555443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.96  E-value=1.2e-07  Score=85.97  Aligned_cols=122  Identities=28%  Similarity=0.272  Sum_probs=77.7

Q ss_pred             ccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEec
Q 026180            3 DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNL   82 (242)
Q Consensus         3 dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L   82 (242)
                      |.++|.+..+.... .  -++.|+.|+|++|.+....      ....++.|+.|||++|.+. .+|..-..-..|+.|.+
T Consensus       170 ~fsyN~L~~mD~SL-q--ll~ale~LnLshNk~~~v~------~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~l  239 (1096)
T KOG1859|consen  170 SFSYNRLVLMDESL-Q--LLPALESLNLSHNKFTKVD------NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNL  239 (1096)
T ss_pred             hcchhhHHhHHHHH-H--HHHHhhhhccchhhhhhhH------HHHhcccccccccccchhc-cccccchhhhhheeeee
Confidence            45677777666543 2  4567888888888776433      2234677888888888887 44442222223788888


Q ss_pred             cCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCc-ccccCCCcccEEecCCCccc
Q 026180           83 STNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIP-QQLGELTTLEVFDVSDNLLT  136 (242)
Q Consensus        83 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~  136 (242)
                      ++|.++ .+-+ +.++.+|+.||++.|-+.+... ..+..+..|+.|.|.+|++-
T Consensus       240 rnN~l~-tL~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  240 RNNALT-TLRG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cccHHH-hhhh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            888876 3322 5677778888888887764311 12344567778888888775

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.76  E-value=2.3e-05  Score=61.19  Aligned_cols=120  Identities=20%  Similarity=0.202  Sum_probs=89.9

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +||.+.+|..+....   .-..+...+||++|.|.....-  +    .++.|.+|.|++|.|+.+.|.--..+++|+.|.
T Consensus        24 ~~LR~lkip~ienlg---~~~d~~d~iDLtdNdl~~l~~l--p----~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~   94 (233)
T KOG1644|consen   24 LDLRGLKIPVIENLG---ATLDQFDAIDLTDNDLRKLDNL--P----HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLI   94 (233)
T ss_pred             cccccccccchhhcc---ccccccceecccccchhhcccC--C----CccccceEEecCCcceeeccchhhhccccceEE
Confidence            577888888877722   1455778889999888765432  2    277899999999999977777666778899999


Q ss_pred             ccCCCCCCCCC--cccCCCCCCCEEeCCCCCCCCCCcc----cccCCCcccEEecCC
Q 026180           82 LSTNSLQGHIP--PTLGNLIVLESLDLSNNKLSGQIPQ----QLGELTTLEVFDVSD  132 (242)
Q Consensus        82 L~~n~l~~~~p--~~~~~l~~L~~L~l~~N~l~~~~p~----~~~~l~~L~~L~l~~  132 (242)
                      |.+|.|. .+-  +.+..+++|++|.+-+|..+.. +.    .+..+|+|+.||.+.
T Consensus        95 LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k-~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen   95 LTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHK-KNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ecCcchh-hhhhcchhccCCccceeeecCCchhcc-cCceeEEEEecCcceEeehhh
Confidence            9999986 333  2356788999999999988732 22    366788999998765

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.59  E-value=0.00014  Score=63.37  Aligned_cols=109  Identities=16%  Similarity=0.224  Sum_probs=61.3

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceee-eEEEeecCCchhhHHHhhcCccEEEccCC-CCccCcchhccCCCCCCE
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSY-YSLTLSNKGTELEYEKLSNLITAIILSNN-SFVGEIPTSIANLKGLRT   79 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~p~~~~~l~~L~~   79 (242)
                      ++++++.|+.+|.      -..+|+.|.+++ +.+...+.       ..+.+|+.|++++| .+. .+|.      +|+.
T Consensus        57 L~Is~c~L~sLP~------LP~sLtsL~Lsnc~nLtsLP~-------~LP~nLe~L~Ls~Cs~L~-sLP~------sLe~  116 (426)
T PRK15386         57 LYIKDCDIESLPV------LPNELTEITIENCNNLTTLPG-------SIPEGLEKLTVCHCPEIS-GLPE------SVRS  116 (426)
T ss_pred             EEeCCCCCcccCC------CCCCCcEEEccCCCCcccCCc-------hhhhhhhheEccCccccc-cccc------ccce
Confidence            6788888888883      233788888865 44443322       23567888888887 554 3443      3555


Q ss_pred             EeccCCCCC--CCCCcccCCC------------------CCCCEEeCCCCCCCCCCcccccCCCcccEEecCCC
Q 026180           80 LNLSTNSLQ--GHIPPTLGNL------------------IVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDN  133 (242)
Q Consensus        80 L~L~~n~l~--~~~p~~~~~l------------------~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N  133 (242)
                      |++..+...  +.+|..+..|                  ++|+.|+++++... ..|..+.  .+|+.|+++.+
T Consensus       117 L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        117 LEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             EEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            556555431  1333322211                  35666666666654 3343332  36666666554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.50  E-value=6.6e-05  Score=70.03  Aligned_cols=111  Identities=19%  Similarity=0.146  Sum_probs=78.1

Q ss_pred             CCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCC-CCCcccCCCC
Q 026180           21 RYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQG-HIPPTLGNLI   99 (242)
Q Consensus        21 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~   99 (242)
                      .+|+|+.|.+.+-.+...+   +......+++|..||+|+.+++..  ..++.|++|+.|-+.+=.+.. ..-..+..|.
T Consensus       146 ~LPsL~sL~i~~~~~~~~d---F~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~  220 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDD---FSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLK  220 (699)
T ss_pred             hCcccceEEecCceecchh---HHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhccc
Confidence            7888888888875554322   445556688899999999988844  556788888888776655542 1223467789


Q ss_pred             CCCEEeCCCCCCCCCCcc-------cccCCCcccEEecCCCcccc
Q 026180          100 VLESLDLSNNKLSGQIPQ-------QLGELTTLEVFDVSDNLLTG  137 (242)
Q Consensus       100 ~L~~L~l~~N~l~~~~p~-------~~~~l~~L~~L~l~~N~l~~  137 (242)
                      +|+.||+|....... +.       .-..+|+|+.||.+++.+..
T Consensus       221 ~L~vLDIS~~~~~~~-~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  221 KLRVLDISRDKNNDD-TKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             CCCeeeccccccccc-hHHHHHHHHhcccCccccEEecCCcchhH
Confidence            999999998776532 21       22357899999999877753

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.38  E-value=2.9e-05  Score=65.18  Aligned_cols=113  Identities=19%  Similarity=0.192  Sum_probs=50.5

Q ss_pred             CCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccC----cchhccCCCCCCEEeccCCCCCCCCC----ccc
Q 026180           24 ALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGE----IPTSIANLKGLRTLNLSTNSLQGHIP----PTL   95 (242)
Q Consensus        24 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p----~~~   95 (242)
                      .|+++..+.|.+..-+.......+...+.|..+.++.|.|...    +-..|..+++|+.|||.+|.++..-.    ..+
T Consensus       158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL  237 (382)
T KOG1909|consen  158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL  237 (382)
T ss_pred             ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh
Confidence            4555555555555443333333333344555555555555321    12233445555555555555542211    223


Q ss_pred             CCCCCCCEEeCCCCCCCCCCcccc-----cCCCcccEEecCCCccc
Q 026180           96 GNLIVLESLDLSNNKLSGQIPQQL-----GELTTLEVFDVSDNLLT  136 (242)
Q Consensus        96 ~~l~~L~~L~l~~N~l~~~~p~~~-----~~l~~L~~L~l~~N~l~  136 (242)
                      ..++.|+.++++.+.+...-...|     ...++|+.+.+.+|.++
T Consensus       238 ~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  238 SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            444455555555555442211111     12345555555555554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.34  E-value=0.00037  Score=50.74  Aligned_cols=112  Identities=13%  Similarity=0.203  Sum_probs=67.5

Q ss_pred             cccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCC
Q 026180           10 TYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQG   89 (242)
Q Consensus        10 ~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~   89 (242)
                      ++|++.+|.  ...+|+.+.+.. .+..++...+..    .+.|+.+.+.++ +.......|.....++.+.+.. .+..
T Consensus         1 ~~i~~~~F~--~~~~l~~i~~~~-~~~~I~~~~F~~----~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~   71 (129)
T PF13306_consen    1 TSIGNNAFY--NCSNLESITFPN-TIKKIGENAFSN----CTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKS   71 (129)
T ss_dssp             -EE-TTTTT--T-TT--EEEETS-T--EE-TTTTTT-----TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-E
T ss_pred             CEECHHHHh--CCCCCCEEEECC-CeeEeChhhccc----cccccccccccc-ccccceeeeecccccccccccc-cccc
Confidence            357888888  788898888874 566676666544    677899999875 6656667788888899999976 5543


Q ss_pred             CCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCC
Q 026180           90 HIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSD  132 (242)
Q Consensus        90 ~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~  132 (242)
                      .....|..+.+|+.+++..+ +.......|.++ .++.+.+..
T Consensus        72 i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   72 IGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             E-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            55667788899999999776 554555567776 888887764

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.24  E-value=0.00019  Score=58.11  Aligned_cols=101  Identities=25%  Similarity=0.247  Sum_probs=54.2

Q ss_pred             CCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCC--CCccCcchhccCCCCCCEEeccCCCCCCCCCcc---c
Q 026180           21 RYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNN--SFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPT---L   95 (242)
Q Consensus        21 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n--~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~---~   95 (242)
                      .+..|+.|++.+..++...+-.      .+++|+.|.+|.|  .+++.++...-.+++|+++++++|+|..  +.+   +
T Consensus        41 ~~~~le~ls~~n~gltt~~~~P------~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl  112 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTNFP------KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPL  112 (260)
T ss_pred             cccchhhhhhhccceeecccCC------CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchh
Confidence            5556666665554444322211      1566777777777  5555454444455777777777777762  222   2


Q ss_pred             CCCCCCCEEeCCCCCCCCCCc---ccccCCCcccEEe
Q 026180           96 GNLIVLESLDLSNNKLSGQIP---QQLGELTTLEVFD  129 (242)
Q Consensus        96 ~~l~~L~~L~l~~N~l~~~~p---~~~~~l~~L~~L~  129 (242)
                      ..+.+|..|++.++..+...-   ..|.-+++|++|+
T Consensus       113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            344555666776666654211   1244455555554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.18  E-value=0.00019  Score=59.49  Aligned_cols=98  Identities=30%  Similarity=0.315  Sum_probs=70.0

Q ss_pred             cCCchhhHHHhhcCccEEEccCCCCcc--CcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCC-
Q 026180           39 NKGTELEYEKLSNLITAIILSNNSFVG--EIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQI-  115 (242)
Q Consensus        39 ~~~~~~~~~~~~~~L~~L~Ls~n~i~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-  115 (242)
                      ..+-+..+......++.+||.+|.|+.  .+..-+.+++.|++|+|+.|.+...+-.....+.+|+.|-|.+..+...- 
T Consensus        59 ~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~  138 (418)
T KOG2982|consen   59 NEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQS  138 (418)
T ss_pred             cchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhh
Confidence            344455555667788999999999983  23344558999999999999998555443346788999999888776432 


Q ss_pred             cccccCCCcccEEecCCCccc
Q 026180          116 PQQLGELTTLEVFDVSDNLLT  136 (242)
Q Consensus       116 p~~~~~l~~L~~L~l~~N~l~  136 (242)
                      ...+..+|.++.|+++.|.+.
T Consensus       139 ~s~l~~lP~vtelHmS~N~~r  159 (418)
T KOG2982|consen  139 TSSLDDLPKVTELHMSDNSLR  159 (418)
T ss_pred             hhhhhcchhhhhhhhccchhh
Confidence            234567788888888888543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.15  E-value=0.00014  Score=61.17  Aligned_cols=116  Identities=22%  Similarity=0.199  Sum_probs=78.0

Q ss_pred             CCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchh-------------ccCCCCCCEEeccCCCC
Q 026180           21 RYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTS-------------IANLKGLRTLNLSTNSL   87 (242)
Q Consensus        21 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~-------------~~~l~~L~~L~L~~n~l   87 (242)
                      ..+.|++|+||+|.+.-.....+..+.+....|+.|+|.+|.+...-...             ...-+.|+.+..+.|++
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            44578888888888776555555555555677888888888876322111             23456788888888887


Q ss_pred             CCCCC----cccCCCCCCCEEeCCCCCCCCC----CcccccCCCcccEEecCCCccc
Q 026180           88 QGHIP----PTLGNLIVLESLDLSNNKLSGQ----IPQQLGELTTLEVFDVSDNLLT  136 (242)
Q Consensus        88 ~~~~p----~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~  136 (242)
                      ....-    ..|...+.|+.+.++.|.|...    +...+..+++|+.|||..|-|+
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            62211    2356667888888888877632    1234667888888888888886

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.10  E-value=0.00047  Score=50.17  Aligned_cols=109  Identities=13%  Similarity=0.222  Sum_probs=62.8

Q ss_pred             CCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCC
Q 026180            7 NNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNS   86 (242)
Q Consensus         7 N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~   86 (242)
                      +.+..|+..+|.  ...+|+.+.+..+ +..++...+..    ...++.+.+.. .+.......|...++++.+++..+ 
T Consensus        21 ~~~~~I~~~~F~--~~~~l~~i~~~~~-~~~i~~~~F~~----~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-   91 (129)
T PF13306_consen   21 NTIKKIGENAFS--NCTSLKSINFPNN-LTSIGDNAFSN----CKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-   91 (129)
T ss_dssp             ST--EE-TTTTT--T-TT-SEEEESST-TSCE-TTTTTT-----TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT-
T ss_pred             CCeeEeChhhcc--ccccccccccccc-ccccceeeeec----ccccccccccc-cccccccccccccccccccccCcc-
Confidence            468899999999  8888999999875 66666666544    66789999976 555456677888999999999876 


Q ss_pred             CCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCccc
Q 026180           87 LQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLE  126 (242)
Q Consensus        87 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~  126 (242)
                      +.......|.+. .|+.+.+.. .++......|.++++|+
T Consensus        92 ~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   92 ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             -BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            654556667776 999999886 55546666788877764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.00  E-value=0.00012  Score=60.63  Aligned_cols=80  Identities=21%  Similarity=0.213  Sum_probs=48.2

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcc-hhccCCCCCCEE
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIP-TSIANLKGLRTL   80 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p-~~~~~l~~L~~L   80 (242)
                      +||.+|+|++..+...---.+|.|+.|+++.|.+...-...+.    ...+|+.|.|.+..+....- ..+..++.++.|
T Consensus        76 lDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~----p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel  151 (418)
T KOG2982|consen   76 LDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPL----PLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL  151 (418)
T ss_pred             hhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcc----cccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence            5778888877554332222678888888888877654333221    14567777777766654322 233456666666


Q ss_pred             eccCC
Q 026180           81 NLSTN   85 (242)
Q Consensus        81 ~L~~n   85 (242)
                      .++.|
T Consensus       152 HmS~N  156 (418)
T KOG2982|consen  152 HMSDN  156 (418)
T ss_pred             hhccc
Confidence            66666

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.78  E-value=0.00076  Score=63.10  Aligned_cols=111  Identities=20%  Similarity=0.266  Sum_probs=80.3

Q ss_pred             CCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccC-cchhccCCCCCCEEeccCCCCCCCCCcccCCCCC
Q 026180           22 YPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGE-IPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIV  100 (242)
Q Consensus        22 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  100 (242)
                      ..+|++|++++...-  ..+-.......+++|+.|.+++-.+... .-....++++|..||+|+.+++. + ..++.+.+
T Consensus       121 r~nL~~LdI~G~~~~--s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~Lkn  196 (699)
T KOG3665|consen  121 RQNLQHLDISGSELF--SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKN  196 (699)
T ss_pred             HHhhhhcCccccchh--hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhcccc
Confidence            347889999874433  3444455567799999999988776532 23455688999999999999983 3 55788899


Q ss_pred             CCEEeCCCCCCCC-CCcccccCCCcccEEecCCCccc
Q 026180          101 LESLDLSNNKLSG-QIPQQLGELTTLEVFDVSDNLLT  136 (242)
Q Consensus       101 L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~  136 (242)
                      |+.|.+.+=.+.. ..-..+.++++|+.||+|.....
T Consensus       197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~  233 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN  233 (699)
T ss_pred             HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence            9988887766552 11124668999999999986654

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.68  E-value=0.003  Score=55.20  Aligned_cols=97  Identities=21%  Similarity=0.316  Sum_probs=62.7

Q ss_pred             CCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccC-CCCccCcchhccCCCCCCEEeccCC-CCCCCCCcccCCCC
Q 026180           22 YPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSN-NSFVGEIPTSIANLKGLRTLNLSTN-SLQGHIPPTLGNLI   99 (242)
Q Consensus        22 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~-n~i~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~   99 (242)
                      +.+++.|+++.+.|...+        ..+.+|+.|.+++ +.++ .+|+.+  ..+|++|++++| .+. .+|..     
T Consensus        51 ~~~l~~L~Is~c~L~sLP--------~LP~sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~Cs~L~-sLP~s-----  113 (426)
T PRK15386         51 ARASGRLYIKDCDIESLP--------VLPNELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHCPEIS-GLPES-----  113 (426)
T ss_pred             hcCCCEEEeCCCCCcccC--------CCCCCCcEEEccCCCCcc-cCCchh--hhhhhheEccCccccc-ccccc-----
Confidence            578889999888666543        2367799999987 4444 667654  358999999988 555 55543     


Q ss_pred             CCCEEeCCCCCCC--CCCcccccCC------------------CcccEEecCCCccc
Q 026180          100 VLESLDLSNNKLS--GQIPQQLGEL------------------TTLEVFDVSDNLLT  136 (242)
Q Consensus       100 ~L~~L~l~~N~l~--~~~p~~~~~l------------------~~L~~L~l~~N~l~  136 (242)
                       |+.|++..+...  +.+|..+..+                  ++|+.|++++|...
T Consensus       114 -Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i  169 (426)
T PRK15386        114 -VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI  169 (426)
T ss_pred             -cceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc
Confidence             555566555431  2344433222                  36788888877654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.48  E-value=0.0017  Score=52.64  Aligned_cols=84  Identities=25%  Similarity=0.309  Sum_probs=60.6

Q ss_pred             hcCccEEEccCCCCccCcchhccCCCCCCEEeccCC--CCCCCCCcccCCCCCCCEEeCCCCCCCCCCccc---ccCCCc
Q 026180           50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTN--SLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQ---LGELTT  124 (242)
Q Consensus        50 ~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~---~~~l~~  124 (242)
                      +..|+.|.+.+..++. . ..|..|++|++|.++.|  .+++.++.-...+++|+++++++|++.-  +..   +..+.+
T Consensus        42 ~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~n  117 (260)
T KOG2739|consen   42 FVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELEN  117 (260)
T ss_pred             ccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcc
Confidence            4456666666766662 2 23567889999999999  6666666555566999999999999872  333   445667


Q ss_pred             ccEEecCCCcccc
Q 026180          125 LEVFDVSDNLLTG  137 (242)
Q Consensus       125 L~~L~l~~N~l~~  137 (242)
                      |..|++.+|..+.
T Consensus       118 L~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  118 LKSLDLFNCSVTN  130 (260)
T ss_pred             hhhhhcccCCccc
Confidence            8889998887764

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.81  E-value=0.004  Score=30.68  Aligned_cols=18  Identities=33%  Similarity=0.543  Sum_probs=9.1

Q ss_pred             ccEEEccCCCCccCcchhc
Q 026180           53 ITAIILSNNSFVGEIPTSI   71 (242)
Q Consensus        53 L~~L~Ls~n~i~~~~p~~~   71 (242)
                      |+.|||++|+|+ .+|..|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            455555555555 444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.65  E-value=0.0036  Score=30.83  Aligned_cols=18  Identities=44%  Similarity=0.700  Sum_probs=8.7

Q ss_pred             CCEEeccCCCCCCCCCccc
Q 026180           77 LRTLNLSTNSLQGHIPPTL   95 (242)
Q Consensus        77 L~~L~L~~n~l~~~~p~~~   95 (242)
                      |++||+++|+++ .+|+.|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            445555555555 444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.51  E-value=0.00075  Score=55.49  Aligned_cols=100  Identities=23%  Similarity=0.197  Sum_probs=70.1

Q ss_pred             CCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCC-cccCCCCC
Q 026180           22 YPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIP-PTLGNLIV  100 (242)
Q Consensus        22 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~  100 (242)
                      +.+.+.|++-+..|+.+      .....++.|+.|.||-|.|+..-|  +..++.|++|+|..|.|....- ..+.++++
T Consensus        18 l~~vkKLNcwg~~L~DI------sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlps   89 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI------SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPS   89 (388)
T ss_pred             HHHhhhhcccCCCccHH------HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence            34455555555544432      233458889999999999985544  5678899999999999873321 23688999


Q ss_pred             CCEEeCCCCCCCCCCcc-----cccCCCcccEEe
Q 026180          101 LESLDLSNNKLSGQIPQ-----QLGELTTLEVFD  129 (242)
Q Consensus       101 L~~L~l~~N~l~~~~p~-----~~~~l~~L~~L~  129 (242)
                      |+.|+|..|...|.-+.     .+.-+|+|+.||
T Consensus        90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            99999999998876543     245577887776

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.31  E-value=0.0002  Score=57.38  Aligned_cols=99  Identities=11%  Similarity=0.081  Sum_probs=55.8

Q ss_pred             CCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccC
Q 026180            5 NANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLST   84 (242)
Q Consensus         5 s~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~   84 (242)
                      |--.+++||.....  .+...+.||++.|.+.-.....     ..+..+..|+++.|++. ..|..+..+..+..+++..
T Consensus        26 s~s~~s~~~v~ei~--~~kr~tvld~~s~r~vn~~~n~-----s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~   97 (326)
T KOG0473|consen   26 SLSELSEIPVREIA--SFKRVTVLDLSSNRLVNLGKNF-----SILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHK   97 (326)
T ss_pred             CHHHhcccchhhhh--ccceeeeehhhhhHHHhhccch-----HHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhc
Confidence            33344455544444  4555666666655544332221     23445556666666666 5666666666666666666


Q ss_pred             CCCCCCCCcccCCCCCCCEEeCCCCCCC
Q 026180           85 NSLQGHIPPTLGNLIVLESLDLSNNKLS  112 (242)
Q Consensus        85 n~l~~~~p~~~~~l~~L~~L~l~~N~l~  112 (242)
                      |.++ ..|.+++..+.++++++-.|.++
T Consensus        98 n~~~-~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   98 NNHS-QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             cchh-hCCccccccCCcchhhhccCcch
Confidence            6666 56666666666666666666554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.29  E-value=0.00028  Score=56.54  Aligned_cols=84  Identities=19%  Similarity=0.182  Sum_probs=75.9

Q ss_pred             hcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEe
Q 026180           50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD  129 (242)
Q Consensus        50 ~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~  129 (242)
                      ....+.||++.|++- .+...|+.++.+..||++.|++. ..|..++.+..+..+++-.|..+ ..|..++..+.+++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            456788999999988 67778888999999999999999 89999999999999999999998 7899999999999999


Q ss_pred             cCCCccc
Q 026180          130 VSDNLLT  136 (242)
Q Consensus       130 l~~N~l~  136 (242)
                      +.+|.++
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            9999876

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.22  E-value=0.028  Score=46.40  Aligned_cols=38  Identities=32%  Similarity=0.453  Sum_probs=20.0

Q ss_pred             cCccEEEccCCCCccCcchh----ccCCCCCCEEeccCCCCC
Q 026180           51 NLITAIILSNNSFVGEIPTS----IANLKGLRTLNLSTNSLQ   88 (242)
Q Consensus        51 ~~L~~L~Ls~n~i~~~~p~~----~~~l~~L~~L~L~~n~l~   88 (242)
                      +.|+.++||.|.+....|..    ++.-+.|.+|.+++|.+.
T Consensus        92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            45556666666655444433    234455566666655543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.57  E-value=0.0052  Score=50.70  Aligned_cols=90  Identities=22%  Similarity=0.194  Sum_probs=66.1

Q ss_pred             CCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcc-hhccCCCCCCEEeccC
Q 026180            6 ANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIP-TSIANLKGLRTLNLST   84 (242)
Q Consensus         6 ~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p-~~~~~l~~L~~L~L~~   84 (242)
                      +..|.+|.-  +.  +++.|++|.|+.|.|+...      ++.-++.|++|+|..|.|..... ..+.++++|+.|-|..
T Consensus        28 g~~L~DIsi--c~--kMp~lEVLsLSvNkIssL~------pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   28 GCGLDDISI--CE--KMPLLEVLSLSVNKISSLA------PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             CCCccHHHH--HH--hcccceeEEeeccccccch------hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence            344555442  33  8999999999999998543      23347889999999999984322 2356899999999999


Q ss_pred             CCCCCCCCcc-----cCCCCCCCEEe
Q 026180           85 NSLQGHIPPT-----LGNLIVLESLD  105 (242)
Q Consensus        85 n~l~~~~p~~-----~~~l~~L~~L~  105 (242)
                      |-..+..+..     +..||+|+.||
T Consensus        98 NPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   98 NPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             CCcccccchhHHHHHHHHcccchhcc
Confidence            9988777653     45678887765

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.31  E-value=0.061  Score=24.59  Aligned_cols=12  Identities=33%  Similarity=0.495  Sum_probs=4.4

Q ss_pred             ccEEEccCCCCc
Q 026180           53 ITAIILSNNSFV   64 (242)
Q Consensus        53 L~~L~Ls~n~i~   64 (242)
                      |+.|+|++|+++
T Consensus         3 L~~L~l~~n~L~   14 (17)
T PF13504_consen    3 LRTLDLSNNRLT   14 (17)
T ss_dssp             -SEEEETSS--S
T ss_pred             cCEEECCCCCCC
Confidence            444555555444

...

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=92.93  E-value=0.11  Score=29.56  Aligned_cols=25  Identities=20%  Similarity=0.139  Sum_probs=12.0

Q ss_pred             eeeeehhhhhhhHhhhhHHhhhcch
Q 026180          191 KTVLIGYASGTVIGVVLGHIFSTRK  215 (242)
Q Consensus       191 ~~~~~~~~~~~v~~~~~~~~~~~~~  215 (242)
                      ..+++++.++++++++++++++.||
T Consensus        13 Ia~~VvVPV~vI~~vl~~~l~~~~r   37 (40)
T PF08693_consen   13 IAVGVVVPVGVIIIVLGAFLFFWYR   37 (40)
T ss_pred             EEEEEEechHHHHHHHHHHhheEEe
Confidence            4444455555555554444444344

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=92.16  E-value=0.14  Score=42.44  Aligned_cols=42  Identities=26%  Similarity=0.402  Sum_probs=27.1

Q ss_pred             ccCCCCCCEEeccCCCCCCCCCcc----cCCCCCCCEEeCCCCCCC
Q 026180           71 IANLKGLRTLNLSTNSLQGHIPPT----LGNLIVLESLDLSNNKLS  112 (242)
Q Consensus        71 ~~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~l~~N~l~  112 (242)
                      +-.++.|+..+||+|-+....|..    +..-..|.+|.+++|.+.
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            345677777777777776666643    344466777777777654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.75  E-value=0.16  Score=25.80  Aligned_cols=13  Identities=54%  Similarity=0.772  Sum_probs=6.1

Q ss_pred             CCCEEeccCCCCC
Q 026180           76 GLRTLNLSTNSLQ   88 (242)
Q Consensus        76 ~L~~L~L~~n~l~   88 (242)
                      +|+.|+|++|+|.
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.75  E-value=0.16  Score=25.80  Aligned_cols=13  Identities=54%  Similarity=0.772  Sum_probs=6.1

Q ss_pred             CCCEEeccCCCCC
Q 026180           76 GLRTLNLSTNSLQ   88 (242)
Q Consensus        76 ~L~~L~L~~n~l~   88 (242)
                      +|+.|+|++|+|.
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4444444444444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=91.53  E-value=0.03  Score=46.77  Aligned_cols=85  Identities=24%  Similarity=0.159  Sum_probs=44.5

Q ss_pred             CCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCC-CCCCC-CcccCCCCCC
Q 026180           24 ALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNS-LQGHI-PPTLGNLIVL  101 (242)
Q Consensus        24 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~-l~~~~-p~~~~~l~~L  101 (242)
                      .||+|||+...|+...   .....+....|+.|.|.++++...+-..+..-.+|+.|+|+... ++... .-.+.++..|
T Consensus       186 Rlq~lDLS~s~it~st---l~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVST---LHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhHHhhcchhheeHHH---HHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence            4788888887776432   22222335566677777777665555555555556666665432 22100 0113444555


Q ss_pred             CEEeCCCCCC
Q 026180          102 ESLDLSNNKL  111 (242)
Q Consensus       102 ~~L~l~~N~l  111 (242)
                      +.|+++++.+
T Consensus       263 ~~LNlsWc~l  272 (419)
T KOG2120|consen  263 DELNLSWCFL  272 (419)
T ss_pred             hhcCchHhhc
Confidence            5555555543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.46  E-value=0.19  Score=25.46  Aligned_cols=16  Identities=56%  Similarity=0.601  Sum_probs=10.4

Q ss_pred             CCCCEEeCCCCCCCCC
Q 026180           99 IVLESLDLSNNKLSGQ  114 (242)
Q Consensus        99 ~~L~~L~l~~N~l~~~  114 (242)
                      ++|+.|+|++|+++..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4566777777777633

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.46  E-value=0.19  Score=25.46  Aligned_cols=16  Identities=56%  Similarity=0.601  Sum_probs=10.4

Q ss_pred             CCCCEEeCCCCCCCCC
Q 026180           99 IVLESLDLSNNKLSGQ  114 (242)
Q Consensus        99 ~~L~~L~l~~N~l~~~  114 (242)
                      ++|+.|+|++|+++..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4566777777777633

>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains

Probab=89.24  E-value=0.35  Score=38.17  Aligned_cols=18  Identities=11%  Similarity=0.313  Sum_probs=7.5

Q ss_pred             eeeehhhhhhhHhhhhHH
Q 026180          192 TVLIGYASGTVIGVVLGH  209 (242)
Q Consensus       192 ~~~~~~~~~~v~~~~~~~  209 (242)
                      .|++|+++|++.++++++
T Consensus        38 ~I~iaiVAG~~tVILVI~   55 (221)
T PF08374_consen   38 KIMIAIVAGIMTVILVIF   55 (221)
T ss_pred             eeeeeeecchhhhHHHHH
Confidence            344444444444333333

They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=88.64  E-value=0.5  Score=35.32  Aligned_cols=25  Identities=12%  Similarity=0.127  Sum_probs=12.5

Q ss_pred             cceeeeehhhhhhhHhhhhHHhhhc
Q 026180          189 GWKTVLIGYASGTVIGVVLGHIFST  213 (242)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~~~~~~~~  213 (242)
                      .++++++|+++++++++++++++++
T Consensus        50 IVIGvVVGVGg~ill~il~lvf~~c   74 (154)
T PF04478_consen   50 IVIGVVVGVGGPILLGILALVFIFC   74 (154)
T ss_pred             EEEEEEecccHHHHHHHHHhheeEE
Confidence            3455566655555554444444333

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=86.14  E-value=0.21  Score=36.10  Aligned_cols=13  Identities=38%  Similarity=0.575  Sum_probs=5.5

Q ss_pred             ehhhhhhhHhhhh
Q 026180          195 IGYASGTVIGVVL  207 (242)
Q Consensus       195 ~~~~~~~v~~~~~  207 (242)
                      +++++|+++++++
T Consensus        67 ~~Ii~gv~aGvIg   79 (122)
T PF01102_consen   67 IGIIFGVMAGVIG   79 (122)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             eehhHHHHHHHHH
Confidence            3444444444433

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=86.10  E-value=0.19  Score=42.16  Aligned_cols=109  Identities=21%  Similarity=0.185  Sum_probs=68.4

Q ss_pred             CCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCcc---CcchhccCCCCCCEEeccCCC-CCCCCCcccC
Q 026180           21 RYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVG---EIPTSIANLKGLRTLNLSTNS-LQGHIPPTLG   96 (242)
Q Consensus        21 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~---~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~   96 (242)
                      .+..|..|+++.+.+.-..  ........-..|+.|+|++..-.-   .+.--....+++..|||++|. ++...-..|.
T Consensus       258 scs~L~~LNlsWc~l~~~~--Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~  335 (419)
T KOG2120|consen  258 SCSRLDELNLSWCFLFTEK--VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF  335 (419)
T ss_pred             hhhhHhhcCchHhhccchh--hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence            5677888888887554321  222222334567888888765321   111222457889999999875 3433334567


Q ss_pred             CCCCCCEEeCCCCCCCCCCccc---ccCCCcccEEecCCC
Q 026180           97 NLIVLESLDLSNNKLSGQIPQQ---LGELTTLEVFDVSDN  133 (242)
Q Consensus        97 ~l~~L~~L~l~~N~l~~~~p~~---~~~l~~L~~L~l~~N  133 (242)
                      .++.|++|.++.+-.  .+|..   +...|+|.+|++.+.
T Consensus       336 kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  336 KFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            788888888877643  55654   456788999987653

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=84.06  E-value=0.26  Score=24.41  Aligned_cols=13  Identities=31%  Similarity=0.368  Sum_probs=6.0

Q ss_pred             CccEEEccCCCCc
Q 026180           52 LITAIILSNNSFV   64 (242)
Q Consensus        52 ~L~~L~Ls~n~i~   64 (242)
                      +|+.|+|++|.|+
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            4555555555554

...

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=83.43  E-value=0.6  Score=33.79  Aligned_cols=27  Identities=15%  Similarity=0.154  Sum_probs=17.5

Q ss_pred             cceeeeehhhhhhhHhhhhHHhhhcch
Q 026180          189 GWKTVLIGYASGTVIGVVLGHIFSTRK  215 (242)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~~~~~~~~~~  215 (242)
                      .+.+|++|+++|+++.++++.++++|+
T Consensus        65 ~i~~Ii~gv~aGvIg~Illi~y~irR~   91 (122)
T PF01102_consen   65 AIIGIIFGVMAGVIGIILLISYCIRRL   91 (122)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeehhHHHHHHHHHHHHHHHHHHHHH
Confidence            346778888888777666555555433

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=82.04  E-value=1  Score=23.03  Aligned_cols=17  Identities=41%  Similarity=0.813  Sum_probs=9.5

Q ss_pred             CCCEEeCCCCCCCCCCcc
Q 026180          100 VLESLDLSNNKLSGQIPQ  117 (242)
Q Consensus       100 ~L~~L~l~~N~l~~~~p~  117 (242)
                      +|+.|++++|+++ .+|+
T Consensus         3 ~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             ccceeecCCCccc-cCcc
Confidence            4556666666665 4443

>PF13908 Shisa: Wnt and FGF inhibitory regulator

Probab=81.65  E-value=2.3  Score=32.96  Aligned_cols=22  Identities=27%  Similarity=0.418  Sum_probs=10.2

Q ss_pred             eeeeehhhhhhhHhhhhHHhhh
Q 026180          191 KTVLIGYASGTVIGVVLGHIFS  212 (242)
Q Consensus       191 ~~~~~~~~~~~v~~~~~~~~~~  212 (242)
                      ..++++++++++++++++++++
T Consensus        78 ~~iivgvi~~Vi~Iv~~Iv~~~   99 (179)
T PF13908_consen   78 TGIIVGVICGVIAIVVLIVCFC   99 (179)
T ss_pred             eeeeeehhhHHHHHHHhHhhhe
Confidence            4455555555444444333333

>PF15102 TMEM154: TMEM154 protein family

Probab=81.30  E-value=0.93  Score=33.68  Aligned_cols=18  Identities=6%  Similarity=-0.219  Sum_probs=8.3

Q ss_pred             hhhHHhhhcchhhHHHHH
Q 026180          205 VVLGHIFSTRKYEWLAKT  222 (242)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~  222 (242)
                      ++++++++.+.+||+.|.
T Consensus        72 Ll~vV~lv~~~kRkr~K~   89 (146)
T PF15102_consen   72 LLSVVCLVIYYKRKRTKQ   89 (146)
T ss_pred             HHHHHHheeEEeecccCC
Confidence            333344444445566543

>TIGR00864 PCC polycystin cation channel protein

Probab=80.22  E-value=0.72  Score=49.19  Aligned_cols=37  Identities=11%  Similarity=0.134  Sum_probs=33.8

Q ss_pred             ccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCC
Q 026180            3 DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKG   41 (242)
Q Consensus         3 dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~   41 (242)
                      ||++|+|+.|+...|.  .+++|+.|+|++|.+.+....
T Consensus         1 DLSnN~LstLp~g~F~--~L~sL~~LdLsgNPw~CDC~L   37 (2740)
T TIGR00864         1 DISNNKISTIEEGICA--NLCNLSEIDLSGNPFECDCGL   37 (2740)
T ss_pred             CCCCCcCCccChHHhc--cCCCceEEEeeCCcccccccc
Confidence            7999999999999999  899999999999999986543

Note: this model has been restricted to the amino half because for technical reasons.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	242
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-20
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-20
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-10

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 58  LSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQ 117
           +S N   G IP  I ++  L  LNL  N + G IP  +G+L  L  LDLS+NKL G+IPQ
Sbjct: 636 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 695
Query: 118 QLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLSKQCDNS 171
            +  LT L   D+S+N L+GPIP   QF TF    F  NPGLCG PL + CD S
Sbjct: 696 AMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR-CDPS 748

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 94.4 bits (233), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 58  LSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQ 117
           +S N   G IP  I ++  L  LNL  N + G IP  +G+L  L  LDLS+NKL G+IPQ
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698
Query: 118 QLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLSKQCDNS 171
            +  LT L   D+S+N L+GPIP   QF TF    F  NPGLCG PL + CD S
Sbjct: 699 AMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR-CDPS 751

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 67/143 (46%), Gaps = 24/143 (16%)
Query: 45  EYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQG--------------- 89
            Y   S L T++ +S N   G+IP + ANL  L  ++LS N L+G               
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 90  HIPPT-----LGNLIV---LESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPR 141
           H+        LG + +   L  LDL NN++ G +PQ L +L  L   +VS N L G IP+
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Query: 142 GKQFNTFGKGSFDGNPGLCGQPL 164
           G     F   ++  N  LCG PL
Sbjct: 287 GGNLQRFDVSAYANNKCLCGSPL 309

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	242
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-52
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-30
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-40
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-31
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-31
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-28
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-22
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  178 bits (454), Expect = 6e-52
 Identities = 57/174 (32%), Positives = 78/174 (44%), Gaps = 6/174 (3%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNS 62
             N      ++   L   R         +         G        +  +  + +S N 
Sbjct: 590 AGNLLEFQGIRSEQLN--RLSTRNPCNITSRVYG----GHTSPTFDNNGSMMFLDMSYNM 643

Query: 63  FVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGEL 122
             G IP  I ++  L  LNL  N + G IP  +G+L  L  LDLS+NKL G+IPQ +  L
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703

Query: 123 TTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLSKQCDNSATSPP 176
           T L   D+S+N L+GPIP   QF TF    F  NPGLCG PL +   ++A    
Sbjct: 704 TMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYA 757

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  116 bits (292), Expect = 7e-30
 Identities = 39/93 (41%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 48  KLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLS 107
             S L  ++ LS N   G IP+S+ +L  LR L L  N L+G IP  L  +  LE+L L 
Sbjct: 416 NCSEL-VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

Query: 108 NNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
            N L+G+IP  L   T L    +S+N LTG IP
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  114 bits (287), Expect = 4e-29
 Identities = 41/99 (41%), Positives = 55/99 (55%), Gaps = 1/99 (1%)

Query: 43  ELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLE 102
            L     + L   + L NN F G+IP +++N   L +L+LS N L G IP +LG+L  L 
Sbjct: 387 NLCQNPKNTLQE-LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445

Query: 103 SLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPR 141
            L L  N L G+IPQ+L  + TLE   +  N LTG IP 
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  114 bits (287), Expect = 4e-29
 Identities = 42/111 (37%), Positives = 55/111 (49%), Gaps = 3/111 (2%)

Query: 48  KLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLS 107
            +  L T +IL  N   GEIP+ ++N   L  ++LS N L G IP  +G L  L  L LS
Sbjct: 464 YVKTLET-LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522

Query: 108 NNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPR--GKQFNTFGKGSFDGN 156
           NN  SG IP +LG+  +L   D++ NL  G IP    KQ          G 
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  113 bits (286), Expect = 5e-29
 Identities = 38/94 (40%), Positives = 51/94 (54%), Gaps = 1/94 (1%)

Query: 48  KLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLS 107
            LS L   + L  N   GEIP  +  +K L TL L  N L G IP  L N   L  + LS
Sbjct: 440 SLSKL-RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498

Query: 108 NNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPR 141
           NN+L+G+IP+ +G L  L +  +S+N  +G IP 
Sbjct: 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  107 bits (269), Expect = 8e-27
 Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 48  KLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDL 106
               L   + LS N F G +P    +   L +L LS+N+  G +P  TL  +  L+ LDL
Sbjct: 292 ACDTLTG-LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350

Query: 107 SNNKLSGQIPQQLGELTT-LEVFDVSDNLLTGPIP 140
           S N+ SG++P+ L  L+  L   D+S N  +GPI 
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  106 bits (268), Expect = 1e-26
 Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 3/96 (3%)

Query: 47  EKLSNLITAIILSNNSFVGEIPTSIA-NLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLD 105
             L +L   + L+ N F GEIP  ++     L  L+LS N   G +PP  G+  +LESL 
Sbjct: 266 LPLKSL-QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324

Query: 106 LSNNKLSGQIPQQ-LGELTTLEVFDVSDNLLTGPIP 140
           LS+N  SG++P   L ++  L+V D+S N  +G +P
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 360

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  102 bits (256), Expect = 5e-25
 Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 10/139 (7%)

Query: 3   DVNANNLT-YLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNN 61
           D++AN+++       +       L +   S   ++       ++  +  NL   + +S+N
Sbjct: 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD-----VDVSRCVNL-EFLDVSSN 210

Query: 62  SFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGE 121
           +F   IP  + +   L+ L++S N L G     +     L+ L++S+N+  G IP     
Sbjct: 211 NFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP-- 267

Query: 122 LTTLEVFDVSDNLLTGPIP 140
           L +L+   +++N  TG IP
Sbjct: 268 LKSLQYLSLAENKFTGEIP 286

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  102 bits (256), Expect = 5e-25
 Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 5/98 (5%)

Query: 48  KLSNLITAIILSNNSFVGEIPT-SIANLKGLRTLNLSTNSLQGHIPPTLGNLIV-LESLD 105
             S L  ++ LS+N+F GE+P  ++  ++GL+ L+LS N   G +P +L NL   L +LD
Sbjct: 316 SCSLL-ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374

Query: 106 LSNNKLSGQIPQQLGE--LTTLEVFDVSDNLLTGPIPR 141
           LS+N  SG I   L +    TL+   + +N  TG IP 
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.5 bits (241), Expect = 5e-23
 Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 7/97 (7%)

Query: 48  KLSNLITAIILSNNSFVGEIPTSIA---NLKGLRTLNLSTNSLQGHIPPTLGNLIVLESL 104
           KL++L   + LS NS  G              L+ L +S N + G +   +   + LE L
Sbjct: 149 KLNSL-EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFL 205

Query: 105 DLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPR 141
           D+S+N  S  IP  LG+ + L+  D+S N L+G   R
Sbjct: 206 DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR 241

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 92.3 bits (230), Expect = 1e-21
 Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 10/116 (8%)

Query: 34  SLTLSN---KGTELEYEKLSNLITAIILSNNSFVGEIPT--SIANLKGLRTLNLSTNSLQ 88
           SL LSN    G+   ++  ++L T++ LS NS  G + T  S+ +  GL+ LN+S+N+L 
Sbjct: 81  SLFLSNSHINGSVSGFKCSASL-TSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD 139

Query: 89  GHIP-PTLGNLIVLESLDLSNNKLSGQIPQQL---GELTTLEVFDVSDNLLTGPIP 140
                     L  LE LDLS N +SG              L+   +S N ++G + 
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 88.0 bits (219), Expect = 4e-20
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 6/99 (6%)

Query: 53  ITAIILSNNSF---VGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNN 109
           +T+I LS+         + +S+ +L GL +L LS + + G +         L SLDLS N
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRN 110

Query: 110 KLSGQIP--QQLGELTTLEVFDVSDNLLTGPIPRGKQFN 146
            LSG +     LG  + L+  +VS N L  P        
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK 149

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 84.2 bits (209), Expect = 8e-19
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 58  LSNNSFVGEIPTSIANLKGLRTLNLSTN--SLQGHIPPTLGNLIVLESLDLSNNKLSGQI 115
           ++ N   G+    I N    +  + + N    QG     L  L      ++++    G  
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624

Query: 116 PQQLGELTTLEVFDVSDNLLTGPIP 140
                   ++   D+S N+L+G IP
Sbjct: 625 SPTFDNNGSMMFLDMSYNMLSGYIP 649

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.0 bits (193), Expect = 8e-17
 Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 7/96 (7%)

Query: 48  KLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLS 107
              +LI  + L+ N F G IP ++       +  ++ N + G     + N  + +    +
Sbjct: 536 DCRSLIW-LDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHGA 590

Query: 108 NN--KLSGQIPQQLGELTTLEVFDVSDNLLTGPIPR 141
            N  +  G   +QL  L+T    +++  +  G    
Sbjct: 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  140 bits (356), Expect = 1e-40
 Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 2/118 (1%)

Query: 49  LSNL-ITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLS 107
            +NL +  + LS N   G+      + K  + ++L+ NSL   +   +G    L  LDL 
Sbjct: 194 FANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLR 252

Query: 108 NNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLS 165
           NN++ G +PQ L +L  L   +VS N L G IP+G     F   ++  N  LCG PL 
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  117 bits (295), Expect = 1e-31
 Identities = 32/94 (34%), Positives = 44/94 (46%)

Query: 48  KLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLS 107
            L  L    I   N+ VG IP +IA L  L  L ++  ++ G IP  L  +  L +LD S
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133

Query: 108 NNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPR 141
            N LSG +P  +  L  L       N ++G IP 
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  115 bits (291), Expect = 5e-31
 Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 2/95 (2%)

Query: 48  KLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLS 107
           KL+ L   + +++ +  G IP  ++ +K L TL+ S N+L G +PP++ +L  L  +   
Sbjct: 99  KLTQLHY-LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157

Query: 108 NNKLSGQIPQQLGELTTLEVF-DVSDNLLTGPIPR 141
            N++SG IP   G  + L     +S N LTG IP 
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  108 bits (272), Expect = 2e-28
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 48  KLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVL-ESLDL 106
           ++  L   +  S N+  G +P SI++L  L  +    N + G IP + G+   L  S+ +
Sbjct: 123 QIKTL-VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181

Query: 107 SNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
           S N+L+G+IP     L  L   D+S N+L G   
Sbjct: 182 SRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDAS 214

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 91.8 bits (229), Expect = 3e-22
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 49  LSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQG--HIPPTLGNLIVLESLDL 106
           LS+ +      N +++G +  +      +  L+LS  +L     IP +L NL  L  L +
Sbjct: 24  LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI 83

Query: 107 SN-NKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
              N L G IP  + +LT L    ++   ++G IP
Sbjct: 84  GGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP 118

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 7/82 (8%)

Query: 66  EIPTSIANLKGLRTLNLST----NSLQGHIPPTLGNLIVLESLDLSNNKLSGQ--IPQQL 119
           +I   + N   L +   +T     +  G +  T      + +LDLS   L     IP  L
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 120 GELTTLEVFDVSD-NLLTGPIP 140
             L  L    +   N L GPIP
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIP 94

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 88.2 bits (219), Expect = 3e-20
 Identities = 23/148 (15%), Positives = 53/148 (35%), Gaps = 19/148 (12%)

Query: 8   NLTYLQD------PLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNN 61
            LT L+       P +      A       Y     +    +L+++ L +L   + + N 
Sbjct: 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE---DLKWDNLKDLTD-VEVYNC 259

Query: 62  SFVGEIPTSIANLKGLRTLNLSTNSL--------QGHIPPTLGNLIVLESLDLSNNKL-S 112
             + ++PT +  L  ++ +N++ N                       ++ + +  N L +
Sbjct: 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319

Query: 113 GQIPQQLGELTTLEVFDVSDNLLTGPIP 140
             +   L ++  L + +   N L G +P
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEGKLP 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 82.0 bits (203), Expect = 4e-18
 Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 11/104 (10%)

Query: 43  ELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLST------NSLQGHIPPTLG 96
           +     L  L+  I LS NSF  + PT   N   L+   +        N      P  + 
Sbjct: 506 DFRATTLPYLVG-IDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563

Query: 97  NLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
               L  L + +N +   + +++     + V D+ DN       
Sbjct: 564 LCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDL 604

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 77.4 bits (191), Expect = 1e-16
 Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 8/114 (7%)

Query: 37  LSNKGTEL--EYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPT 94
           LSN  T +     +L+ L     + N+ FV E              N             
Sbjct: 191 LSNNITFVSKAVMRLTKL-RQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLK 244

Query: 95  LGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTF 148
             NL  L  +++ N     ++P  L  L  +++ +V+ N           +   
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 77.0 bits (190), Expect = 2e-16
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 5/96 (5%)

Query: 48  KLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLS 107
           K+  L   +    N   G++P +  +   L +LNL+ N +        G    +E+L  +
Sbjct: 328 KMKKL-GMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385

Query: 108 NNKLSGQIPQ--QLGELTTLEVFDVSDNLLTGPIPR 141
           +NKL   IP       ++ +   D S N +     +
Sbjct: 386 HNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 75.8 bits (187), Expect = 4e-16
 Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 18/110 (16%)

Query: 47  EKLSNLITAIILSNNSFVG-------EIPTSIANLKGLRTLNLSTNSLQGHIPPTL--GN 97
              S L + I L  N           +   +  N   L +++L  N L   +        
Sbjct: 454 STGSPLSS-INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATT 511

Query: 98  LIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNL------LTGPIPR 141
           L  L  +DLS N  S   P Q    +TL+ F + +             P 
Sbjct: 512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 75.8 bits (187), Expect = 5e-16
 Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 15/108 (13%)

Query: 44  LEYEKLSNLITAIILSNNSFVG-------EIPTSIANLKGLRTLNLSTNSLQGHIPPTLG 96
            + + +S + +AI  S N            +  +      + ++NLS N +         
Sbjct: 396 FDAKSVSVM-SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS 454

Query: 97  NLIVLESLDLSNNKLSG-------QIPQQLGELTTLEVFDVSDNLLTG 137
               L S++L  N L+           +       L   D+  N LT 
Sbjct: 455 TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 74.7 bits (184), Expect = 1e-15
 Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 11/99 (11%)

Query: 48  KLSNLITAIILSNNSFVGEIP--TSIANLKGLRTLNLSTNSLQG-------HIPPTLGNL 98
               +   +  ++N     IP      ++  +  ++ S N +          + PT    
Sbjct: 375 FTEQV-ENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432

Query: 99  IVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTG 137
           I + S++LSNN++S    +     + L   ++  N+LT 
Sbjct: 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 71.6 bits (176), Expect = 1e-14
 Identities = 13/106 (12%), Positives = 27/106 (25%), Gaps = 7/106 (6%)

Query: 48  KLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQG----HIPPTLGNLIVLES 103
               + T + L      G +P +I  L  L  L L ++  +       P  +   +  E 
Sbjct: 79  SNGRV-TGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137

Query: 104 LDLSNNKLSGQIPQQLGELTT--LEVFDVSDNLLTGPIPRGKQFNT 147
                                  L    ++ +     I +  +   
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL 183

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.8 bits (166), Expect = 3e-13
 Identities = 10/83 (12%), Positives = 26/83 (31%), Gaps = 3/83 (3%)

Query: 51  NLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNK 110
            +        N  + E P  I     L  L + +N ++  +   +     +  LD+ +N 
Sbjct: 542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNP 598

Query: 111 LSGQIPQQLGELTTLEVFDVSDN 133
                   +       ++ +  +
Sbjct: 599 NISIDLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.8 bits (161), Expect = 1e-12
 Identities = 16/117 (13%), Positives = 33/117 (28%), Gaps = 7/117 (5%)

Query: 59  SNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQ---- 114
             + +  +   S+ +   +  L+L      G +P  +G L  LE L L ++         
Sbjct: 65  ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124

Query: 115 IPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGS---FDGNPGLCGQPLSKQC 168
            P+ +    + E                     F        + +P       S + 
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.7 bits (132), Expect = 6e-09
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 4/96 (4%)

Query: 45  EYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESL 104
           +Y  L  +  A+   N S  G      AN    + L++           +L +   +  L
Sbjct: 31  DYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQ----PGVSLNSNGRVTGL 86

Query: 105 DLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
            L     SG++P  +G+LT LEV  +  +       
Sbjct: 87  SLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.0 bits (216), Expect = 7e-20
 Identities = 26/127 (20%), Positives = 44/127 (34%), Gaps = 7/127 (5%)

Query: 47  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDL 106
           + LS+L   + L +N F         +L  L+ ++L  N+L         N + L+SL+L
Sbjct: 533 KGLSHL-HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 591

Query: 107 SNNKLSGQIPQQLGE-LTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGL-----C 160
             N ++    +  G     L   D+  N           F  +   +    P L     C
Sbjct: 592 QKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLC 651

Query: 161 GQPLSKQ 167
             P    
Sbjct: 652 NTPPHYH 658

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 83.9 bits (208), Expect = 1e-18
 Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 3/111 (2%)

Query: 34  SLTLS-NKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGH 90
            L L+ N+   L     +    +T++ +  N+     P     L  L+ LNL  N L   
Sbjct: 29  VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL 88

Query: 91  IPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPR 141
              T      L  L L +N +         +   L   D+S N L+     
Sbjct: 89  SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.4 bits (204), Expect = 3e-18
 Identities = 34/141 (24%), Positives = 53/141 (37%), Gaps = 12/141 (8%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELEYEKLSNL--ITAIILS 59
           ++  N L  L        RY  LT        L +  N  ++LE E    L  +  + L 
Sbjct: 31  NLTHNQLRRLPAANFT--RYSQLTS-------LDVGFNTISKLEPELCQKLPMLKVLNLQ 81

Query: 60  NNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQL 119
           +N        + A    L  L+L +NS+Q            L +LDLS+N LS       
Sbjct: 82  HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141

Query: 120 GELTTLEVFDVSDNLLTGPIP 140
            +L  L+   +S+N +     
Sbjct: 142 VQLENLQELLLSNNKIQALKS 162

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 81.6 bits (202), Expect = 5e-18
 Identities = 19/92 (20%), Positives = 36/92 (39%)

Query: 49  LSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSN 108
           L   IT + L++N        +      L +L++  N++    P     L +L+ L+L +
Sbjct: 23  LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82

Query: 109 NKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
           N+LS    +     T L    +  N +     
Sbjct: 83  NELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 114

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.9 bits (195), Expect = 4e-17
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 11/118 (9%)

Query: 34  SLTLS-NKGTELEYEKLSNL--ITAIILSNN--------SFVGEIPTSIANLKGLRTLNL 82
            L LS N    +  + L  L  +  + L +N        +  G     +  L  L  LNL
Sbjct: 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543

Query: 83  STNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
            +N           +L  L+ +DL  N L+           +L+  ++  NL+T    
Sbjct: 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.9 bits (195), Expect = 5e-17
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 14/144 (9%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELEYEKLSNL--ITAIILS 59
           DV  N ++ L+  L   +  P L         L L  N+ ++L  +  +    +T + L 
Sbjct: 55  DVGFNTISKLEPELCQKL--PMLKV-------LNLQHNELSQLSDKTFAFCTNLTELHLM 105

Query: 60  NNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQ-- 117
           +NS            K L TL+LS N L      T   L  L+ L LSNNK+     +  
Sbjct: 106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165

Query: 118 QLGELTTLEVFDVSDNLLTGPIPR 141
            +   ++L+  ++S N +    P 
Sbjct: 166 DIFANSSLKKLELSSNQIKEFSPG 189

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.1 bits (193), Expect = 9e-17
 Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 14/145 (9%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELEYEKLSNL--ITAIILS 59
           ++  N L+ L D          LT        L L  N   +++         +  + LS
Sbjct: 79  NLQHNELSQLSDKTFAFC--TNLTE-------LHLMSNSIQKIKNNPFVKQKNLITLDLS 129

Query: 60  NNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLG--NLIVLESLDLSNNKLSGQIPQ 117
           +N        +   L+ L+ L LS N +Q      L       L+ L+LS+N++    P 
Sbjct: 130 HNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189

Query: 118 QLGELTTLEVFDVSDNLLTGPIPRG 142
               +  L    +++  L   +   
Sbjct: 190 CFHAIGRLFGLFLNNVQLGPSLTEK 214

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.1 bits (193), Expect = 9e-17
 Identities = 27/159 (16%), Positives = 48/159 (30%), Gaps = 6/159 (3%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNS 62
           ++++N +          +    L     +   L  S           +++   + LSN+ 
Sbjct: 177 ELSSNQIKEFSPGCFHAI--GRLFGLFLNNVQLGPSLTEKLCLELANTSIRN-LSLSNSQ 233

Query: 63  FVGEIPTSIANLKG--LRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLG 120
                 T+   LK   L  L+LS N+L      +   L  LE   L  N +       L 
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293

Query: 121 ELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGL 159
            L  +   ++  +     I            SF     L
Sbjct: 294 GLFNVRYLNLKRSFTKQSIS-LASLPKIDDFSFQWLKCL 331

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.7 bits (192), Expect = 1e-16
 Identities = 21/147 (14%), Positives = 45/147 (30%), Gaps = 3/147 (2%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNS 62
           ++  N++  ++  +   +    L Y   S    +L     E       + +  + L+ N 
Sbjct: 335 NMEDNDIPGIKSNMFTGL--INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392

Query: 63  FVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLSNNKLSGQIPQQLGE 121
                  + + L  L  L+L  N +   +       L  +  + LS NK           
Sbjct: 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL 452

Query: 122 LTTLEVFDVSDNLLTGPIPRGKQFNTF 148
           + +L+   +    L         F   
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPL 479

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.3 bits (178), Expect = 8e-15
 Identities = 26/146 (17%), Positives = 55/146 (37%), Gaps = 17/146 (11%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELEYEKLSNL--ITAIILS 59
            + +N++  +++          L         L LS N  +  +      L  +  ++LS
Sbjct: 103 HLMSNSIQKIKNNPFVKQ--KNLIT-------LDLSHNGLSSTKLGTQVQLENLQELLLS 153

Query: 60  NNSFVGEIPTSIANLKG--LRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQ 117
           NN         +       L+ L LS+N ++   P     +  L  L L+N +L   + +
Sbjct: 154 NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE 213

Query: 118 QLGE---LTTLEVFDVSDNLLTGPIP 140
           +L      T++    +S++ L+    
Sbjct: 214 KLCLELANTSIRNLSLSNSQLSTTSN 239

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.0 bits (177), Expect = 1e-14
 Identities = 27/143 (18%), Positives = 50/143 (34%), Gaps = 13/143 (9%)

Query: 5   NANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELEYEKLSNL--ITAIILSNN 61
           +  +L  L +     + +  L         L L+ NK +++E +  S L  +  + L  N
Sbjct: 363 SFTSLRTLTNETFVSLAHSPLHI-------LNLTKNKISKIESDAFSWLGHLEVLDLGLN 415

Query: 62  SFVGEIP-TSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSG--QIPQQ 118
               E+       L+ +  + LS N        +   +  L+ L L    L      P  
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 475

Query: 119 LGELTTLEVFDVSDNLLTGPIPR 141
              L  L + D+S+N +      
Sbjct: 476 FQPLRNLTILDLSNNNIANINDD 498

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 69.6 bits (171), Expect = 7e-14
 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 11/104 (10%)

Query: 47  EKLSNLITAIILSNNSF--VGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESL 104
             + +L   ++L   +   V   P+    L+ L  L+LS N++       L  L  LE L
Sbjct: 451 ALVPSL-QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509

Query: 105 DLSNNKLS--------GQIPQQLGELTTLEVFDVSDNLLTGPIP 140
           DL +N L+        G     L  L+ L + ++  N       
Sbjct: 510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.1 bits (167), Expect = 2e-13
 Identities = 29/129 (22%), Positives = 38/129 (29%), Gaps = 28/129 (21%)

Query: 42  TELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVL 101
             + Y  L    T   +S  S       S   LK L  LN+  N + G        LI L
Sbjct: 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355

Query: 102 ESLDLSN----------------------------NKLSGQIPQQLGELTTLEVFDVSDN 133
           + L LSN                            NK+S         L  LEV D+  N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415

Query: 134 LLTGPIPRG 142
            +   +   
Sbjct: 416 EIGQELTGQ 424

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.9 bits (164), Expect = 4e-13
 Identities = 28/120 (23%), Positives = 42/120 (35%), Gaps = 18/120 (15%)

Query: 42  TELEYEKLS-NLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIV 100
             L+Y  LS +  +   L+N +FV    +       L  LNL+ N +          L  
Sbjct: 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSP------LHILNLTKNKISKIESDAFSWLGH 406

Query: 101 LESLDLSNNKLSGQIPQQ-LGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGL 159
           LE LDL  N++  ++  Q    L  +    +S N                  SF   P L
Sbjct: 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR----------NSFALVPSL 456

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 3/64 (4%)

Query: 77  LRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
               + S   L   +P  L     +  L+L++N+L           + L   DV  N ++
Sbjct: 6   HEVADCSHLKLT-QVPDDLPTN--ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 137 GPIP 140
              P
Sbjct: 63  KLEP 66

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 84.7 bits (210), Expect = 4e-19
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 1/89 (1%)

Query: 49  LSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSN 108
              L   + LS          +  +L  L TL L+ N +Q         L  L+ L    
Sbjct: 51  FPEL-QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 109 NKLSGQIPQQLGELTTLEVFDVSDNLLTG 137
             L+      +G L TL+  +V+ NL+  
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQS 138

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 84.7 bits (210), Expect = 4e-19
 Identities = 18/92 (19%), Positives = 31/92 (33%)

Query: 49  LSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSN 108
           L      + LS N        S  +   L+ L+LS   +Q        +L  L +L L+ 
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 109 NKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
           N +          L++L+     +  L     
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 84.3 bits (209), Expect = 7e-19
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 2/94 (2%)

Query: 48  KLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLS 107
           +L NL   + LS        PT+  +L  L+ LN+S N+           L  L+ LD S
Sbjct: 468 ELRNLTF-LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 526

Query: 108 NNKLSGQIPQQLGEL-TTLEVFDVSDNLLTGPIP 140
            N +     Q+L    ++L   +++ N       
Sbjct: 527 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 83.9 bits (208), Expect = 8e-19
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 2/95 (2%)

Query: 47  EKLSNLITAIILSNNSFVGEI-PTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLD 105
             LS+L   + ++ NSF     P     L+ L  L+LS   L+   P    +L  L+ L+
Sbjct: 442 NGLSSLEV-LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500

Query: 106 LSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
           +S+N            L +L+V D S N +     
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 79.3 bits (196), Expect = 3e-17
 Identities = 28/144 (19%), Positives = 47/144 (32%), Gaps = 13/144 (9%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSN---KGTELEYEKLSNLITAIILS 59
           D++ N L++            +L Y       L LS          +  L  L   +   
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKY-------LDLSFNGVITMSSNFLGLEQL-EHLDFQ 404

Query: 60  NNSFVGEIPTSI-ANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQI-PQ 117
           +++       S+  +L+ L  L++S    +         L  LE L ++ N       P 
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

Query: 118 QLGELTTLEVFDVSDNLLTGPIPR 141
              EL  L   D+S   L    P 
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPT 488

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 76.2 bits (188), Expect = 4e-16
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 49  LSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQG-HIPPTLGNLIVLESLDLS 107
           LS+L   ++    +        I +LK L+ LN++ N +Q   +P    NL  LE LDLS
Sbjct: 99  LSSLQK-LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 108 NNKLSGQIPQQLGELTTLEVF----DVSDNLLTGPIP 140
           +NK+       L  L  + +     D+S N +    P
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.5 bits (181), Expect = 3e-15
 Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 3/96 (3%)

Query: 48  KLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDL 106
             ++L   + LS N  +  + ++   L+ L  L+   ++L+         +L  L  LD+
Sbjct: 371 GTTSLKY-LDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 107 SNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG 142
           S+             L++LEV  ++ N         
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 64.3 bits (157), Expect = 5e-12
 Identities = 30/140 (21%), Positives = 49/140 (35%), Gaps = 11/140 (7%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNS 62
                NL  L++  +G +    L     ++  +             L+NL   + LS+N 
Sbjct: 106 VAVETNLASLENFPIGHL--KTLKELNVAHNLIQSFKLPEYFS--NLTNLEH-LDLSSNK 160

Query: 63  FVGEIPTSIANLKGLR----TLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQ 118
                 T +  L  +     +L+LS N +   I P     I L  L L NN  S  + + 
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKT 219

Query: 119 -LGELTTLEVFDVSDNLLTG 137
            +  L  LEV  +       
Sbjct: 220 CIQGLAGLEVHRLVLGEFRN 239

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 30/157 (19%), Positives = 50/157 (31%), Gaps = 26/157 (16%)

Query: 5   NANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFV 64
           N  NL       L  +    +  +  +Y  L          +  L+N+ ++  L + +  
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAY--LDYYLDDIIDLFNCLTNV-SSFSLVSVTIE 295

Query: 65  GEIPTSIANLKGLRTLNLSTNSL-------------------QGHIPPTLGNLIVLESLD 105
                  +   G + L L                        +G    +  +L  LE LD
Sbjct: 296 RVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 353

Query: 106 LSNNKLS--GQIPQQLGELTTLEVFDVSDNLLTGPIP 140
           LS N LS  G   Q     T+L+  D+S N +     
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 390

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 16/141 (11%), Positives = 40/141 (28%), Gaps = 11/141 (7%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNS 62
           D++ N + ++Q      +R   L          +L+   T ++      +   ++    +
Sbjct: 183 DLSLNPMNFIQPGAFKEIR---LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

Query: 63  FVGEIPTSIANLKGLRTLNLSTNSLQ------GHIPPTLGNLIVLESLDLSNNKLSGQIP 116
                    + L+GL  L +    L         I      L  + S  L +  +     
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299

Query: 117 QQLGELTTLEVFDVSDNLLTG 137
                    +  ++ +     
Sbjct: 300 --FSYNFGWQHLELVNCKFGQ 318

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 80.3 bits (198), Expect = 2e-17
 Identities = 18/162 (11%), Positives = 48/162 (29%), Gaps = 19/162 (11%)

Query: 5   NANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFV 64
              +   +    +       L        ++  + +   ++ +   +L    I +  + +
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437

Query: 65  GEIPTSIANLKGLRTLNLSTNSLQG-------------------HIPPTLGNLIVLESLD 105
             I  +I  L  L+ +  + +                       +   +  NL  L  ++
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497

Query: 106 LSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNT 147
           L N     Q+P  L +L  L+  +++ N           +  
Sbjct: 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 77.2 bits (190), Expect = 2e-16
 Identities = 21/146 (14%), Positives = 45/146 (30%), Gaps = 21/146 (14%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNS 62
               +  TY                +  +        +  EL +  L +L T + L N  
Sbjct: 454 YFANSPFTYD----------NIAVDWEDANSDYAKQYENEELSWSNLKDL-TDVELYNCP 502

Query: 63  FVGEIPTSIANLKGLRTLNLSTNSLQG---------HIPPTLGNLIVLESLDLSNNKLSG 113
            + ++P  + +L  L++LN++ N              +         ++   +  N L  
Sbjct: 503 NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562

Query: 114 -QIPQQLGELTTLEVFDVSDNLLTGP 138
                 L ++  L + D   N +   
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKVRHL 588

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 76.1 bits (187), Expect = 5e-16
 Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 14/131 (10%)

Query: 43  ELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNL------STNSLQGHIPPTLG 96
           +     L  L + + +S N F    PT   N   L+   +        N +    P  + 
Sbjct: 746 DFRATTLPYL-SNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803

Query: 97  NLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDN-LLTGPIPRGKQFNTFGKGSF-- 153
               L  L + +N +   + ++L     L + D++DN  ++  +     +   G      
Sbjct: 804 TCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLY 860

Query: 154 DGNPGLCGQPL 164
           D    + G   
Sbjct: 861 DKTQDIRGCDA 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.3 bits (159), Expect = 2e-12
 Identities = 14/96 (14%), Positives = 37/96 (38%), Gaps = 8/96 (8%)

Query: 48  KLSNLITAIILSNNSFVGEIP--TSIANLKGLRTLNLSTNSLQGHIP-----PTLGNLIV 100
             ++ +  +  S+N     IP   +  ++  + +++ S N +                I 
Sbjct: 616 AFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674

Query: 101 LESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
             ++ LS N++     +     + +    +S+NL+T
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.3 bits (146), Expect = 9e-11
 Identities = 13/86 (15%), Positives = 32/86 (37%), Gaps = 1/86 (1%)

Query: 53  ITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLS 112
           +T + L+     G +P +I  L  L+ L+  T+S            +  +  +   +++ 
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 113 GQIPQ-QLGELTTLEVFDVSDNLLTG 137
               +  L     L + D+  + +  
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINR 410

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.0 bits (140), Expect = 6e-10
 Identities = 11/81 (13%), Positives = 30/81 (37%)

Query: 61  NSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLG 120
           + +  +    + N   +  L+L+    +G +P  +G L  L+ L    +  +        
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 121 ELTTLEVFDVSDNLLTGPIPR 141
           E  T ++ +   + +     +
Sbjct: 369 EELTPDMSEERKHRIRMHYKK 389

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.5 bits (131), Expect = 7e-09
 Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 1/102 (0%)

Query: 39  NKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNL 98
                 +Y+ L  +  A+   N  +      +  +       N   +         L N 
Sbjct: 264 TAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNW-NFNKELDMWGDQPGVDLDNN 322

Query: 99  IVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
             +  L L+     G++P  +G+LT L+V     +  T    
Sbjct: 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGR 364

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 77.4 bits (191), Expect = 2e-16
 Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 4/115 (3%)

Query: 34  SLTLS-NKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGH 90
           ++ LS N    L+    SN   +  + LS          +   L  L  L L+ N +Q  
Sbjct: 36  NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF 95

Query: 91  IPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQF 145
            P +   L  LE+L     KL+      +G+L TL+  +V+ N +         F
Sbjct: 96  SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS-CKLPAYF 149

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 74.3 bits (183), Expect = 2e-15
 Identities = 21/92 (22%), Positives = 33/92 (35%)

Query: 49  LSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSN 108
           + +    I LS N        S +N   L+ L+LS   ++         L  L +L L+ 
Sbjct: 30  IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89

Query: 109 NKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
           N +    P     LT+LE     +  L     
Sbjct: 90  NPIQSFSPGSFSGLTSLENLVAVETKLASLES 121

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.5 bits (181), Expect = 3e-15
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 2/95 (2%)

Query: 47  EKLSNLITAIILSNNSFVGEIPTSI-ANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLD 105
             L++L T + ++ NSF     +++ AN   L  L+LS   L+         L  L+ L+
Sbjct: 445 LGLTSLNT-LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503

Query: 106 LSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
           +S+N L         +L +L   D S N +     
Sbjct: 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.0 bits (177), Expect = 1e-14
 Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 13/138 (9%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTE-LEYEKLSNL--ITAIIL 58
           D++  N     D +   +   +L         L ++ N   +       +N   +T + L
Sbjct: 430 DISYTNTKIDFDGIFLGL--TSLNT-------LKMAGNSFKDNTLSNVFANTTNLTFLDL 480

Query: 59  SNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQ 118
           S              L  L+ LN+S N+L          L  L +LD S N++       
Sbjct: 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540

Query: 119 LGELTTLEVFDVSDNLLT 136
                +L  F++++N + 
Sbjct: 541 QHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.2 bits (175), Expect = 2e-14
 Identities = 21/140 (15%), Positives = 46/140 (32%), Gaps = 7/140 (5%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNS 62
           D++ N L++        +   +L +   S+    + +      +  L  L   +   +++
Sbjct: 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA----NFMGLEELQH-LDFQHST 410

Query: 63  FVGEIPTS-IANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQ-LG 120
                  S   +L+ L  L++S  + +         L  L +L ++ N            
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470

Query: 121 ELTTLEVFDVSDNLLTGPIP 140
             T L   D+S   L     
Sbjct: 471 NTTNLTFLDLSKCQLEQISW 490

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.3 bits (157), Expect = 4e-12
 Identities = 27/142 (19%), Positives = 47/142 (33%), Gaps = 17/142 (11%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELEYEKLSNL--ITAIILS 59
           D++   +  ++D     +    L+        L L+ N          S L  +  ++  
Sbjct: 62  DLSRCEIETIEDKAWHGL--HHLSN-------LILTGNPIQSFSPGSFSGLTSLENLVAV 112

Query: 60  NNSFVGEIPTSIANLKGLRTLNLSTNSLQG-HIPPTLGNLIVLESLDLSNNKLSGQIPQQ 118
                      I  L  L+ LN++ N +    +P    NL  L  +DLS N +       
Sbjct: 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172

Query: 119 LGELT----TLEVFDVSDNLLT 136
           L  L          D+S N + 
Sbjct: 173 LQFLRENPQVNLSLDMSLNPID 194

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.7 bits (132), Expect = 7e-09
 Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 8/108 (7%)

Query: 34  SLTLS-NKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIP 92
           +++L+      LE         ++ +       + PT   +L  L++L L+ N     I 
Sbjct: 289 AMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPT--LDLPFLKSLTLTMNKGS--IS 343

Query: 93  PTLGNLIVLESLDLSNNKLSGQIPQQLGELTT--LEVFDVSDNLLTGP 138
                L  L  LDLS N LS        +L T  L   D+S N     
Sbjct: 344 FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM 391

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.3 bits (131), Expect = 9e-09
 Identities = 23/155 (14%), Positives = 45/155 (29%), Gaps = 16/155 (10%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELEYEKLSNL-ITAIILSN 60
           D++ N +  +    L       L        SL +S N    ++ +    + +  + L  
Sbjct: 159 DLSYNYIQTITVNDLQF-----LRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRG 213

Query: 61  NSFVGEIP-TSIANLKGLRTLNLSTNSLQGHI------PPTLGNLIVL--ESLDLSNNKL 111
           N     I  T + NL GL    L     +         P  +  L  +  +   L+    
Sbjct: 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND 273

Query: 112 SGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFN 146
                 +   L  +    ++   +       K F 
Sbjct: 274 FSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFK 308

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 75.1 bits (185), Expect = 1e-15
 Identities = 17/93 (18%), Positives = 30/93 (32%)

Query: 49  LSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSN 108
           L N    +  S N       T+ + L  L  L+L+   +      T  +   L++L L+ 
Sbjct: 31  LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 109 NKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPR 141
           N L       L     L+        ++     
Sbjct: 91  NPLIFMAETALSGPKALKHLFFIQTGISSIDFI 123

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 74.3 bits (183), Expect = 2e-15
 Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 3/110 (2%)

Query: 34  SLTLS-NKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGH 90
            L  S N    ++    S L  +T + L+          +  +   L TL L+ N L   
Sbjct: 37  CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM 96

Query: 91  IPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
               L     L+ L      +S      L    TLE   +  N ++    
Sbjct: 97  AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL 146

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.1 bits (180), Expect = 4e-15
 Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 14/139 (10%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELE---YEKLSNLITAIIL 58
           + + N L  +Q+      R   LT+       L L+  +   +    ++    L T ++L
Sbjct: 39  EFSFNVLPTIQNTTFS--RLINLTF-------LDLTRCQIYWIHEDTFQSQHRLDT-LVL 88

Query: 59  SNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQ 118
           + N  +    T+++  K L+ L      +       L N   LESL L +N +S     +
Sbjct: 89  TANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK 148

Query: 119 LGELTTLEVFDVSDNLLTG 137
                 L+V D  +N +  
Sbjct: 149 GFPTEKLKVLDFQNNAIHY 167

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.9 bits (169), Expect = 1e-13
 Identities = 20/143 (13%), Positives = 44/143 (30%), Gaps = 12/143 (8%)

Query: 7   NNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELEYEKLSNL--ITAIILSNNSF 63
            +   +   +   +   ++         + L  +    +          +  + L+    
Sbjct: 238 MDDEDISPAVFEGLCEMSVES-------INLQKHYFFNISSNTFHCFSGLQELDLTATHL 290

Query: 64  VGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQI-PQQLGEL 122
             E+P+ +  L  L+ L LS N  +     +  N   L  L +  N    ++    L  L
Sbjct: 291 -SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349

Query: 123 TTLEVFDVSDNLLTGPIPRGKQF 145
             L   D+S + +        Q 
Sbjct: 350 ENLRELDLSHDDIETSDCCNLQL 372

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.0 bits (164), Expect = 4e-13
 Identities = 26/159 (16%), Positives = 48/159 (30%), Gaps = 14/159 (8%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELEYEKLSNL--ITAIILS 59
           D+    + ++ +          L         L L+ N    +    LS    +  +   
Sbjct: 63  DLTRCQIYWIHEDTFQSQ--HRLDT-------LVLTANPLIFMAETALSGPKALKHLFFI 113

Query: 60  NNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQL 119
                      + N K L +L L +N +     P       L+ LD  NN +     + +
Sbjct: 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM 173

Query: 120 GELTTLEV--FDVSDNLLTGPIPRGKQFNTFGKGSFDGN 156
             L        +++ N + G  P       F   +F G 
Sbjct: 174 SSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 49  LSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSN 108
           L  L   ++LS          +  +LK +  ++LS N L       L +L  +  L+L++
Sbjct: 475 LGRLEI-LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLAS 532

Query: 109 NKLSGQIPQQLGELTTLEVFDVSDNLLTG 137
           N +S  +P  L  L+     ++  N L  
Sbjct: 533 NHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 5/97 (5%)

Query: 47  EKLSNLITAIILSNNSFVGEI---PTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLES 103
           + L  L   + L  N F         S+  L  L  L LS   L         +L ++  
Sbjct: 446 DGLPALQH-LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504

Query: 104 LDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
           +DLS+N+L+    + L  L  +   +++ N ++  +P
Sbjct: 505 VDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.3 bits (157), Expect = 4e-12
 Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 7/116 (6%)

Query: 33  YSLTLS-NKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSI-ANLKGLRTLNLSTNSLQ 88
            SL LS N+   L+ E       +  + L+      +   S   NL  L+ LNLS + L 
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438

Query: 89  GHIPPTLGNLIVLESLDLSNNKLSGQIPQQ---LGELTTLEVFDVSDNLLTGPIPR 141
                    L  L+ L+L  N       Q+   L  L  LE+  +S   L+     
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.2 bits (149), Expect = 4e-11
 Identities = 35/133 (26%), Positives = 51/133 (38%), Gaps = 17/133 (12%)

Query: 34  SLTLS--NKGTELEYEKLSNL--ITAIILSNN--SFVGEIPTSIANLKGLRTLNLSTNSL 87
            L++    K  EL    L NL  +  + LS++           + NL  L++LNLS N  
Sbjct: 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388

Query: 88  QGHIPPTLGNLIVLESLDLSNNKLSGQIPQ-QLGELTTLEVFDVSDNLLTGPIPRGKQFN 146
                        LE LDL+  +L  +  Q     L  L+V ++S +LL           
Sbjct: 389 LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE------ 442

Query: 147 TFGKGSFDGNPGL 159
                 FDG P L
Sbjct: 443 ----QLFDGLPAL 451

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 23/145 (15%), Positives = 47/145 (32%), Gaps = 17/145 (11%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELEYEKLSNL--ITAIILS 59
                 ++ +    L       L         L L  N  + ++  K      +  +   
Sbjct: 111 FFIQTGISSIDFIPLHNQ--KTLES-------LYLGSNHISSIKLPKGFPTEKLKVLDFQ 161

Query: 60  NNSFVGEIPTSIANLKGLR--TLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQ 117
           NN+        +++L+     +LNL+ N +   I P   +  V +SL+    +    I +
Sbjct: 162 NNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFK 220

Query: 118 QLG--ELTTLEVFDVSDNLLTGPIP 140
            L    + +L +    D       P
Sbjct: 221 GLKNSTIQSLWLGTFEDMDDEDISP 245

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.5 bits (176), Expect = 7e-15
 Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 1/89 (1%)

Query: 48  KLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLS 107
            L  L   + L   + +   P        L+ L L   S    +P  +  L  LE LDL 
Sbjct: 227 HLPKLEE-LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285

Query: 108 NNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
                 ++P  + +L    +  V  +L  
Sbjct: 286 GCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 12/98 (12%)

Query: 48  KLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIV------- 100
           + + L T + L+ N     +P SIA+L  LR L++        +P  L +          
Sbjct: 125 QFAGLET-LTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182

Query: 101 --LESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
             L+SL L    +   +P  +  L  L+   + ++ L+
Sbjct: 183 VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 48  KLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLS 107
            L NL + + + N+     +  +I +L  L  L+L   +   + PP  G    L+ L L 
Sbjct: 204 NLQNLKS-LKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261

Query: 108 NNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
           +      +P  +  LT LE  D+   +    +P
Sbjct: 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 5/105 (4%)

Query: 34  SLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLK--GLRTLNLSTNSLQGHI 91
                N+      +  SN       +  +        + +    G   L L +  L    
Sbjct: 39  YNADRNRWHSAWRQANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QF 96

Query: 92  PPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
           P     L  L+ + +    L  ++P  + +   LE   ++ N L 
Sbjct: 97  PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR 140

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 1/76 (1%)

Query: 48  KLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLS 107
             + L   +IL + S +  +P  I  L  L  L+L        +P  +  L     + + 
Sbjct: 251 GRAPLKR-LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309

Query: 108 NNKLSGQIPQQLGELT 123
            +  +     +     
Sbjct: 310 PHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.0 bits (115), Expect = 8e-07
 Identities = 12/110 (10%), Positives = 30/110 (27%), Gaps = 25/110 (22%)

Query: 49  LSNLITAIILSNNSFVGEIPTSIANLKGLRTLN--------------------LSTNSLQ 88
            S     +    ++ +      ++  +     +                     +  +L+
Sbjct: 11  SSGREN-LYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK 69

Query: 89  GHIPPTLGNLIV--LESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
                 L +       +L+L +  L  Q P Q   L+ L+   +    L 
Sbjct: 70  -ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM 117

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.4 bits (165), Expect = 4e-13
 Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 4/116 (3%)

Query: 34  SLTLS-NKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGH 90
           +L LS N    L      +   +  + LS          +  +L  L TL L+ N +Q  
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 91  IPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFN 146
                  L  L+ L      L+      +G L TL+  +V+ NL+       + F+
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFS 146

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 48  KLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDL 106
            L NLI  + +S+             L  L  L ++ NS Q +  P     L  L  LDL
Sbjct: 419 SLRNLIY-LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 107 SNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
           S  +L    P     L++L+V +++ N L 
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.3 bits (149), Expect = 4e-11
 Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 48  KLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP--TLGNLIVLESLD 105
             ++L   + LS N  +  + ++   L+ L  L+   ++L+  +       +L  L  LD
Sbjct: 371 GTTSL-KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLD 427

Query: 106 LSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG 142
           +S+             L++LEV  ++ N         
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.9 bits (148), Expect = 5e-11
 Identities = 18/88 (20%), Positives = 31/88 (35%)

Query: 49  LSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSN 108
           L      + LS N        S  +   L+ L+LS   +Q        +L  L +L L+ 
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 109 NKLSGQIPQQLGELTTLEVFDVSDNLLT 136
           N +          L++L+     +  L 
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLA 113

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 4/103 (3%)

Query: 35  LTLS-NKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSI-ANLKGLRTLNLSTNSLQGH 90
           L +S            + L  +  + ++ NSF       I   L+ L  L+LS   L+  
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485

Query: 91  IPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDN 133
            P    +L  L+ L++++N+L          LT+L+   +  N
Sbjct: 486 SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.8 bits (140), Expect = 6e-10
 Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 13/136 (9%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELEYEKLSNL--ITAIILS 59
           D++   +  ++D     +    L+        L L+ N    L     S L  +  ++  
Sbjct: 58  DLSRCEIQTIEDGAYQSL--SHLST-------LILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 60  NNSFVGEIPTSIANLKGLRTLNLSTNSLQ-GHIPPTLGNLIVLESLDLSNNKLSGQIPQQ 118
             +        I +LK L+ LN++ N +Q   +P    NL  LE LDLS+NK+       
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

Query: 119 LGELTTLEVFDVSDNL 134
           L  L  + + ++S +L
Sbjct: 169 LRVLHQMPLLNLSLDL 184

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.0 bits (125), Expect = 6e-08
 Identities = 36/162 (22%), Positives = 57/162 (35%), Gaps = 15/162 (9%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNS 62
                NL  L++  +G +    L     ++  +             L+NL   + LS+N 
Sbjct: 106 VAVETNLASLENFPIGHL--KTLKELNVAHNLIQSFKLPEYFS--NLTNLEH-LDLSSNK 160

Query: 63  FVGEIPTSIANLKGLR----TLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQ 118
                 T +  L  +     +L+LS N +   I P     I L  L L NN  S  + + 
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219

Query: 119 -LGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGL 159
            +  L  LEV      L+ G          F K + +G   L
Sbjct: 220 CIQGLAGLEV----HRLVLGEFRNEGNLEKFDKSALEGLCNL 257

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 7/102 (6%)

Query: 37  LSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLG 96
           +S     ++    +     + L N  F G+ PT    LK L+ L  ++N        +  
Sbjct: 290 VSVTIERVKDFSYNFGWQHLELVNCKF-GQFPTL--KLKSLKRLTFTSNKGGNA--FSEV 344

Query: 97  NLIVLESLDLSNNKLS--GQIPQQLGELTTLEVFDVSDNLLT 136
           +L  LE LDLS N LS  G   Q     T+L+  D+S N + 
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 48  KLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDL 106
           +L NL T + LS        PT+  +L  L+ LN+++N L+  +P      L  L+ + L
Sbjct: 468 ELRNL-TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWL 525

Query: 107 SNNKLS 112
             N   
Sbjct: 526 HTNPWD 531

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.0 bits (161), Expect = 1e-12
 Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 4/134 (2%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNS 62
               +N+          +   ++ +   S+  +   N      +E L +L   + L+ N 
Sbjct: 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV---FETLKDLKV-LNLAYNK 301

Query: 63  FVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGEL 122
                  +   L  L+ LNLS N L          L  +  +DL  N ++    Q    L
Sbjct: 302 INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361

Query: 123 TTLEVFDVSDNLLT 136
             L+  D+ DN LT
Sbjct: 362 EKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.4 bits (149), Expect = 4e-11
 Identities = 25/116 (21%), Positives = 38/116 (32%), Gaps = 8/116 (6%)

Query: 34  SLTLS-NKGTELEYEKLSNL--ITAIILSNNSFVGEI-PTSIANLKGLRTLNLSTNSLQG 89
            L LS N    +       L  +  + L +      I   +  NL  LR L+L ++ +  
Sbjct: 28  RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY- 86

Query: 90  HIPP-TLGNLIVLESLDLSNNKLSGQI--PQQLGELTTLEVFDVSDNLLTGPIPRG 142
            + P     L  L  L L    LS  +        L  L   D+S N +       
Sbjct: 87  FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.7 bits (142), Expect = 3e-10
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 2/98 (2%)

Query: 49  LSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLS 107
           L+     ++LS N       +S   L+ L+ L L +      I      NL  L  LDL 
Sbjct: 23  LNTT-ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 108 NNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQF 145
           ++K+    P     L  L    +    L+  + +   F
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.5 bits (139), Expect = 8e-10
 Identities = 41/160 (25%), Positives = 56/160 (35%), Gaps = 15/160 (9%)

Query: 7   NNLTYLQDPLLGPVRYPALTYYGFSYYSLT-LSNKGTELEYEKLSNLITAIILSNNSFVG 65
           N L  L D L   +R P L     +    +  S   T  E   L  L     L  N    
Sbjct: 411 NRLENL-DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF----LGENMLQL 465

Query: 66  EIPTSI-----ANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLG 120
              T +       L  L+ L L+ N L    P    +L  L  L L++N+L+      L 
Sbjct: 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL- 524

Query: 121 ELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLC 160
               LE+ D+S N L  P P    F +        N  +C
Sbjct: 525 -PANLEILDISRNQLLAPNPD--VFVSLSVLDITHNKFIC 561

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.3 bits (123), Expect = 8e-08
 Identities = 26/150 (17%), Positives = 55/150 (36%), Gaps = 16/150 (10%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTL-----------SNKGTELEYEKLS- 50
           D ++N +  + +  L P++   L+++  +  SL               +   LE   +S 
Sbjct: 154 DFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG 213

Query: 51  NLITAIILSN--NSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIV--LESLDL 106
           N  T  I  N  N+       S+     +       ++++     T   L    +  LDL
Sbjct: 214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL 273

Query: 107 SNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
           S+  +     +    L  L+V +++ N + 
Sbjct: 274 SHGFVFSLNSRVFETLKDLKVLNLAYNKIN 303

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.6 bits (116), Expect = 8e-07
 Identities = 29/129 (22%), Positives = 43/129 (33%), Gaps = 14/129 (10%)

Query: 49  LSNLITAIILSNNSFVG-EIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNL--IVLESLD 105
           L  L   + LS N      +  S   L  L++++ S+N +       L  L    L    
Sbjct: 122 LKALTR-LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180

Query: 106 LSNNKLSGQIPQQLGEL------TTLEVFDVSDNLLTGPIPRGKQFNTFGK---GSFDGN 156
           L+ N L  ++    G+         LE+ DVS N  T     G   N   K    S    
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT-VDITGNFSNAISKSQAFSLILA 239

Query: 157 PGLCGQPLS 165
             + G    
Sbjct: 240 HHIMGAGFG 248

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 30/171 (17%), Positives = 57/171 (33%), Gaps = 39/171 (22%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELEYEKLSNL--ITAIILS 59
           +++ N L  L       +  P + Y       + L  N    ++ +    L  +  + L 
Sbjct: 320 NLSYNLLGELYSSNFYGL--PKVAY-------IDLQKNHIAIIQDQTFKFLEKLQTLDLR 370

Query: 60  NNSFVGEIPTSIANLKGLRTLNLSTNSLQG---------------------HIPPTLGNL 98
           +N+      T+I  +  +  + LS N L                        I   L  +
Sbjct: 371 DNAL-----TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRV 425

Query: 99  IVLESLDLSNNKLSGQIPQQL-GELTTLEVFDVSDNLLTGPIPRGKQFNTF 148
             L+ L L+ N+ S     Q   E  +LE   + +N+L         ++ F
Sbjct: 426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 21/109 (19%)

Query: 48  KLSNLITAIILSNNSFVGEIPTSIANLKG--LRTLNLSTNSLQGHIPPTL---------- 95
           KL++L + I  S+N         +  L+G  L   +L+ NSL   +              
Sbjct: 146 KLNSLKS-IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204

Query: 96  --------GNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
                   GN   ++     +N +S      L     +       + + 
Sbjct: 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 19/140 (13%)

Query: 7   NNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELEYE----KLSNLITAIILSNN 61
           N +T L+D   G      + Y       L L  N+   + +         L   + L  N
Sbjct: 130 NKITMLRDLDEG--CRSRVQY-------LDLKLNEIDTVNFAELAASSDTL-EHLNLQYN 179

Query: 62  SFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGE 121
               ++   +     L+TL+LS+N L   + P   +   +  + L NNKL   I + L  
Sbjct: 180 FIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235

Query: 122 LTTLEVFDVSDNLLTGPIPR 141
              LE FD+  N       R
Sbjct: 236 SQNLEHFDLRGNGFHCGTLR 255

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 49  LSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSN 108
            +       ++++S    + +   +   ++ L+LS N L       L     LE L+LS+
Sbjct: 9   GNRY-KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 109 NKLSGQIPQQLGELTTLEVFDVSDNLLT 136
           N L       L  L+TL   D+++N + 
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYVQ 93

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 59.6 bits (145), Expect = 9e-11
 Identities = 18/74 (24%), Positives = 32/74 (43%)

Query: 67  IPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLE 126
           I     N    +   ++ +SL+  +     +   ++ LDLS N LS      L   T LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 127 VFDVSDNLLTGPIP 140
           + ++S N+L   + 
Sbjct: 62  LLNLSSNVLYETLD 75

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 8/105 (7%)

Query: 34  SLTLS-NKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIP 92
           +L L+ N   EL      ++   +  +NN+    +  S    +G + + L+ N +     
Sbjct: 84  TLDLNNNYVQELL--VGPSI-ETLHAANNNI-SRVSCSR--GQGKKNIYLANNKITMLRD 137

Query: 93  PTLGNLIVLESLDLSNNKLSG-QIPQQLGELTTLEVFDVSDNLLT 136
              G    ++ LDL  N++      +      TLE  ++  N + 
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 6/103 (5%)

Query: 34  SLTLS-NKGTELEYE-KLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHI 91
            L L  N   +++ +   + L T + LS+N     +     +  G+  ++L  N L   I
Sbjct: 173 HLNLQYNFIYDVKGQVVFAKLKT-LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LI 229

Query: 92  PPTLGNLIVLESLDLSNNKLS-GQIPQQLGELTTLEVFDVSDN 133
              L     LE  DL  N    G +     +   ++       
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.9 bits (159), Expect = 1e-12
 Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 7/105 (6%)

Query: 34  SLTLS-NKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHI 91
            L +  N+ +++   + L+ L   + + +N       + + NL  L +L L+ N L    
Sbjct: 247 WLEIGTNQISDINAVKDLTKL-KMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNED 303

Query: 92  PPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
              +G L  L +L LS N ++   P  L  L+ ++  D ++ ++ 
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.9 bits (159), Expect = 2e-12
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 5/94 (5%)

Query: 47  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDL 106
             LS L T + +  N        ++ +L  L+ LN+ +N +       L NL  L SL L
Sbjct: 240 ANLSQL-TWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFL 294

Query: 107 SNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
           +NN+L  +  + +G LT L    +S N +T   P
Sbjct: 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.2 bits (152), Expect = 1e-11
 Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 8/109 (7%)

Query: 34  SLTLS-NKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHI 91
           +L +  NK T++   + L+NL   + L+ ++     P  +ANL  + +LNL  N     +
Sbjct: 92  NLYIGTNKITDISALQNLTNL-RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL 148

Query: 92  PPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
            P L N+  L  L ++ +K+    P  +  LT L    ++ N +    P
Sbjct: 149 SP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP 194

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.1 bits (144), Expect = 2e-10
 Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 7/94 (7%)

Query: 47  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDL 106
             ++ L   + ++ +      P  IANL  L +L+L+ N ++   P  L +L  L     
Sbjct: 152 SNMTGL-NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTA 206

Query: 107 SNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
             N+++   P  +  +T L    + +N +T   P
Sbjct: 207 YVNQITDITP--VANMTRLNSLKIGNNKITDLSP 238

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.3 bits (142), Expect = 3e-10
 Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 9/109 (8%)

Query: 34  SLTLSNKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHI 91
           +L         +    ++L      +L   S    +      L+ +  L ++   +   I
Sbjct: 4   TLATLPAPIN-QIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SI 59

Query: 92  PPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
              +  L  LE L+L+ N+++   P  L  L  L    +  N +T    
Sbjct: 60  QG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA 105

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.7 bits (153), Expect = 3e-12
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 5/102 (4%)

Query: 34  SLTLSNKG-TELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHI 91
            +TL+N   T+L   E   N+   + ++N          I+ L  L  L +    +    
Sbjct: 48  YITLANINVTDLTGIEYAHNI-KDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDK 104

Query: 92  PPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDN 133
            P L  L  L  LD+S++     I  ++  L  +   D+S N
Sbjct: 105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.3 bits (152), Expect = 4e-12
 Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 6/107 (5%)

Query: 34  SLTLS-NKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGH 90
            L +     T  +   LS L  +T + +S+++    I T I  L  + +++LS N     
Sbjct: 92  RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151

Query: 91  IPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTG 137
           I P L  L  L+SL++  + +       + +   L         + G
Sbjct: 152 IMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.9 bits (151), Expect = 6e-12
 Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 4/105 (3%)

Query: 34  SLTLS-NKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHI 91
            LT++    T       LSNL   + +       +   +++ L  L  L++S ++    I
Sbjct: 70  DLTINNIHATNYNPISGLSNL-ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 92  PPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
              +  L  + S+DLS N     I   L  L  L+  ++  + + 
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.9 bits (138), Expect = 3e-10
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 39  NKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNL 98
           +    +   ++++L T I L+N + V ++ T I     ++ L ++      +  P +  L
Sbjct: 33  SSTANITEAQMNSL-TYITLANIN-VTDL-TGIEYAHNIKDLTINNIHAT-NYNP-ISGL 87

Query: 99  IVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
             LE L +    ++      L  LT+L + D+S +     I 
Sbjct: 88  SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 64.5 bits (157), Expect = 4e-12
 Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 17/139 (12%)

Query: 7   NNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELEYEKLSNLITA---IILSNNS 62
           N +T L+D   G      + Y       L L  N+   + + +L+        + L  N 
Sbjct: 130 NKITMLRDLDEG--CRSRVQY-------LDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 63  FVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGEL 122
              ++   +     L+TL+LS+N L   + P   +   +  + L NNKL   I + L   
Sbjct: 181 IY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236

Query: 123 TTLEVFDVSDNLLTGPIPR 141
             LE FD+  N       R
Sbjct: 237 QNLEHFDLRGNGFHCGTLR 255

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 63.7 bits (155), Expect = 6e-12
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 2/92 (2%)

Query: 45  EYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESL 104
           E ++  N      ++++S    + +   +   ++ L+LS N L       L     LE L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 105 DLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
           +LS+N L       L  L+TL   D+++N + 
Sbjct: 64  NLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.5 bits (144), Expect = 2e-10
 Identities = 18/74 (24%), Positives = 32/74 (43%)

Query: 67  IPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLE 126
           I     N    +   ++ +SL+  +     +   ++ LDLS N LS      L   T LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 127 VFDVSDNLLTGPIP 140
           + ++S N+L   + 
Sbjct: 62  LLNLSSNVLYETLD 75

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.5 bits (131), Expect = 7e-09
 Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 8/105 (7%)

Query: 34  SLTLS-NKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIP 92
           +L L+ N   EL      ++   +  +NN+    +  S    +G + + L+ N +     
Sbjct: 84  TLDLNNNYVQELL--VGPSI-ETLHAANNNI-SRVSCSR--GQGKKNIYLANNKITMLRD 137

Query: 93  PTLGNLIVLESLDLSNNKLSG-QIPQQLGELTTLEVFDVSDNLLT 136
              G    ++ LDL  N++      +      TLE  ++  N + 
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 4/86 (4%)

Query: 49  LSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSN 108
            + L T + LS+N     +     +  G+  ++L  N L   I   L     LE  DL  
Sbjct: 190 FAKLKT-LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246

Query: 109 NKLS-GQIPQQLGELTTLEVFDVSDN 133
           N    G +     +   ++       
Sbjct: 247 NGFHCGTLRDFFSKNQRVQTVAKQTV 272

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 18/151 (11%), Positives = 32/151 (21%), Gaps = 5/151 (3%)

Query: 1   MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSN 60
           ++ V    +  L          P L +YG        +     L   K           +
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGS 323

Query: 61  NSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIP---Q 117
                 +     N    R ++      +  I           +L+     L  Q+    +
Sbjct: 324 E--TERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRR 381

Query: 118 QLGELTTLEVFDVSDNLLTGPIPRGKQFNTF 148
              EL       V    L             
Sbjct: 382 AHAELDGTLQQAVGQIELQHATEEQSPLQLL 412

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 9/109 (8%)

Query: 34  SLTLS-NKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHI 91
            L +S NK +++    KL+NL  ++I +NN      P  +  L  L  L+L+ N L+   
Sbjct: 181 RLDISSNKVSDISVLAKLTNL-ESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-- 235

Query: 92  PPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
             TL +L  L  LDL+NN++S   P  L  LT L    +  N ++   P
Sbjct: 236 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 9/109 (8%)

Query: 34  SLTLS-NKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHI 91
           +L         ++  E L+NL T I  SNN      P  + NL  L  + ++ N +    
Sbjct: 50  TLQADRLGIKSIDGVEYLNNL-TQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT 106

Query: 92  PPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
           P  L NL  L  L L NN+++   P  L  LT L   ++S N ++    
Sbjct: 107 P--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA 151

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.7 bits (148), Expect = 5e-11
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 47  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDL 106
             L+ L T + L  N      P  +A L  L  L L+ N L+      + NL  L  L L
Sbjct: 262 SGLTKL-TELKLGANQISNISP--LAGLTALTNLELNENQLED--ISPISNLKNLTYLTL 316

Query: 107 SNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
             N +S   P  +  LT L+     +N ++    
Sbjct: 317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS 348

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.7 bits (148), Expect = 6e-11
 Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 7/94 (7%)

Query: 47  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDL 106
             L+  +   +L   +    +     +L  + TL      ++      +  L  L  ++ 
Sbjct: 21  TALAEKMK-TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINF 75

Query: 107 SNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
           SNN+L+   P  L  LT L    +++N +    P
Sbjct: 76  SNNQLTDITP--LKNLTKLVDILMNNNQIADITP 107

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 10/109 (9%)

Query: 34  SLTLS-NKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHI 91
            L LS N  +++     L++L   +   N          +ANL  L  L++S+N +    
Sbjct: 138 RLELSSNTISDISALSGLTSL-QQLSFGNQV---TDLKPLANLTTLERLDISSNKVSD-- 191

Query: 92  PPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
              L  L  LESL  +NN++S   P  LG LT L+   ++ N L     
Sbjct: 192 ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT 238

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.6 bits (132), Expect = 6e-09
 Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 6/103 (5%)

Query: 38  SNKGTELE-YEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLG 96
            N  +++     L+ L   +   NN       +S+ANL  +  L+   N +    P  L 
Sbjct: 318 FNNISDISPVSSLTKL-QRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LA 372

Query: 97  NLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPI 139
           NL  +  L L++   +         ++           L  P 
Sbjct: 373 NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPA 415

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 22/147 (14%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLS-NLITAI----- 56
            +++N LT++   L+     P+L +   SY  L+       +E    S N I  +     
Sbjct: 171 QLSSNRLTHVDLSLI-----PSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 225

Query: 57  ------ILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLSNN 109
                  L +N+   +    + N  GL  ++LS N L+  I       +  LE L +SNN
Sbjct: 226 VELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNN 282

Query: 110 KLSGQIPQQLGELTTLEVFDVSDNLLT 136
           +L   +      + TL+V D+S N L 
Sbjct: 283 RLV-ALNLYGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 61.2 bits (149), Expect = 3e-11
 Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 9/133 (6%)

Query: 34  SLTLS-NKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGH 90
            + LS N+  ++ Y     +  +  + +SNN  V  +      +  L+ L+LS N L  H
Sbjct: 252 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-H 309

Query: 91  IPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGK 150
           +         LE+L L +N +   +   L    TL+   +S N           F    +
Sbjct: 310 VERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD-CNSLRALFRNVAR 365

Query: 151 GSFDGNPGLCGQP 163
            + D     C   
Sbjct: 366 PAVDDADQHCKID 378

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.6 bits (124), Expect = 6e-08
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 9/103 (8%)

Query: 38  SNKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSI-ANLKGLRTLNLSTNSLQGHIPP- 93
            N    L      N+  +T ++L  N     +P  I  N   L TL++S N+L+  I   
Sbjct: 102 FNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDD 159

Query: 94  TLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
           T      L++L LS+N+L+  +   L  + +L   +VS NLL+
Sbjct: 160 TFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 8/80 (10%), Positives = 28/80 (35%), Gaps = 2/80 (2%)

Query: 58  LSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLSNNKLSGQIP 116
           +   +           L   + +    ++++  +P   L +   +E L+L++ ++     
Sbjct: 28  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDT 86

Query: 117 QQLGELTTLEVFDVSDNLLT 136
                  T++   +  N + 
Sbjct: 87  YAFAYAHTIQKLYMGFNAIR 106

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 6/70 (8%), Positives = 24/70 (34%)

Query: 67  IPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLE 126
           I +++        +++   +   +       L   + +   N+ +       L     +E
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 127 VFDVSDNLLT 136
           + +++D  + 
Sbjct: 73  LLNLNDLQIE 82

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 61.7 bits (149), Expect = 3e-11
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 58  LSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQ 117
           L++      +   +  L  +  L+LS N L+  +PP L  L  LE L  S+N L   +  
Sbjct: 448 LAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD- 502

Query: 118 QLGELTTLEVFDVSDNLLT 136
            +  L  L+   + +N L 
Sbjct: 503 GVANLPRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.8 bits (131), Expect = 6e-09
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 10/97 (10%)

Query: 47  EKLSNLITAIIL-------SNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLI 99
           +  S L     +         + F+ E          +R L+L+   L   +   L  L+
Sbjct: 406 QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLL 463

Query: 100 VLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
           ++  LDLS+N+L   +P  L  L  LEV   SDN L 
Sbjct: 464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 8/95 (8%)

Query: 35  LTLS-NKGTELEY--EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGH- 90
           L LS N+   L      L  L   +  S+N  +  +   +ANL  L+ L L  N LQ   
Sbjct: 468 LDLSHNRLRALPPALAALRCL-EVLQASDN-ALENVD-GVANLPRLQELLLCNNRLQQSA 524

Query: 91  IPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTL 125
               L +   L  L+L  N L  Q       L  +
Sbjct: 525 AIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEM 558

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 61.1 bits (148), Expect = 5e-11
 Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 22/147 (14%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLS-NLITAI----- 56
            +++N LT++   L+     P+L +   SY  L+       +E    S N I  +     
Sbjct: 177 QLSSNRLTHVDLSLI-----PSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 231

Query: 57  ------ILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLSNN 109
                  L +N+   +    + N  GL  ++LS N L+  I       +  LE L +SNN
Sbjct: 232 VELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNN 288

Query: 110 KLSGQIPQQLGELTTLEVFDVSDNLLT 136
           +L   +      + TL+V D+S N L 
Sbjct: 289 RLV-ALNLYGQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.2 bits (143), Expect = 2e-10
 Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 9/137 (6%)

Query: 34  SLTLS-NKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGH 90
            + LS N+  ++ Y     +  +  + +SNN  V  +      +  L+ L+LS N L  H
Sbjct: 258 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-H 315

Query: 91  IPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGK 150
           +         LE+L L +N +   +   L    TL+   +S N           F    +
Sbjct: 316 VERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD-CNSLRALFRNVAR 371

Query: 151 GSFDGNPGLCGQPLSKQ 167
            + D     C      +
Sbjct: 372 PAVDDADQHCKIDYQLE 388

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.1 bits (122), Expect = 1e-07
 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 10/108 (9%)

Query: 34  SLTLS-NKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSI-ANLKGLRTLNLSTNSLQG 89
            L +  N    L      N+  +T ++L  N     +P  I  N   L TL++S N+L+ 
Sbjct: 103 KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE- 160

Query: 90  HIPP-TLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
            I   T      L++L LS+N+L+  +   L  + +L   +VS NLL+
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.4 bits (115), Expect = 8e-07
 Identities = 8/65 (12%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 73  NLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVS 131
            L   + +    ++++  +P   L +   +E L+L++ ++            T++   + 
Sbjct: 49  TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG 107

Query: 132 DNLLT 136
            N + 
Sbjct: 108 FNAIR 112

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.6 bits (100), Expect = 7e-05
 Identities = 6/88 (6%), Positives = 26/88 (29%)

Query: 49  LSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSN 108
           +       +         I +++        +++   +   +       L   + +   N
Sbjct: 1   VGGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN 60

Query: 109 NKLSGQIPQQLGELTTLEVFDVSDNLLT 136
           + +       L     +E+ +++D  + 
Sbjct: 61  STMRKLPAALLDSFRQVELLNLNDLQIE 88

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 23/119 (19%)

Query: 34  SLTLSNKG-TELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIP 92
            L L+N G + L  E   +L  +++ S NS   E+P    +LK L   N +  +L    P
Sbjct: 75  ELELNNLGLSSLP-ELPPHL-ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP 131

Query: 93  ---------------PTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
                          P L N   L+ +D+ NN L  ++P     L  +      +N L 
Sbjct: 132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI---AAGNNQLE 186

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 57.7 bits (140), Expect = 6e-10
 Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 21/118 (17%)

Query: 38  SNKGTEL--EYEKLSNLITAIILSNNSFVGEIPTSIANL-------------KGLRTLNL 82
           S+  TE+  E E + +  T    + + +    P                   +    L L
Sbjct: 20  SSNLTEMPVEAENVKSK-TEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELEL 78

Query: 83  STNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
           +   L   +P    +L   ESL  S N L+ ++P+    L +L V + +   L+   P
Sbjct: 79  NNLGLS-SLPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP 131

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 57.3 bits (139), Expect = 8e-10
 Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 26/136 (19%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTEL-EYEKLSNLITAIILSN 60
           DV+ N+L  L      P   P+L +       +    N+  EL E + L  L TAI   N
Sbjct: 159 DVDNNSLKKL------PDLPPSLEF-------IAAGNNQLEELPELQNLPFL-TAIYADN 204

Query: 61  NSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLG 120
           NS   ++P    +L+   ++    N L     P L NL  L ++   NN L   +P    
Sbjct: 205 NSLK-KLPDLPLSLE---SIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPP 257

Query: 121 ELTTLEVFDVSDNLLT 136
            L  L   +V DN LT
Sbjct: 258 SLEAL---NVRDNYLT 270

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 19/101 (18%)

Query: 49  LSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIV-------- 100
            + L   +  S+N  + E+P    N+K       + +  + + PP  G            
Sbjct: 10  NTFLQEPLRHSSN--LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 101 -----LESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
                   L+L+N  LS  +P+    L +L     S N LT
Sbjct: 68  CLDRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT 104

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 28/101 (27%), Positives = 38/101 (37%), Gaps = 14/101 (13%)

Query: 36  TLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTL 95
              N  + L  E   NL   +  S+N    EI +       L  LN+S N L   +P   
Sbjct: 284 VSENIFSGLS-ELPPNL-YYLNASSN----EIRSLCDLPPSLEELNVSNNKLI-ELPALP 336

Query: 96  GNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
             L   E L  S N L+ ++P+    L  L    V  N L 
Sbjct: 337 PRL---ERLIASFNHLA-EVPELPQNLKQL---HVEYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 47  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDL 106
           +   +L  +I+  NN    E    + NL  L T+    N L+  +P    +   LE+L++
Sbjct: 212 DLPLSL-ESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPS---LEALNV 264

Query: 107 SNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
            +N L+  +P+    LT L+V +   + L+   P
Sbjct: 265 RDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP 297

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 21/115 (18%)

Query: 37  LSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLG 96
                + L           + L+N      +P    +L+   +L  S NSL   +P    
Sbjct: 58  REMAVSRLRDCLDRQA-HELELNNLGLS-SLPELPPHLE---SLVASCNSLT-ELPELPQ 111

Query: 97  NLIVLESLDLSNNKLSGQIPQ---------------QLGELTTLEVFDVSDNLLT 136
           +L  L   + +   LS   P                +L   + L++ DV +N L 
Sbjct: 112 SLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK 166

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 16/108 (14%)

Query: 34  SLTLS-NKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIP 92
            L  S N   E+      NL   + +  N    E P    +++ LR  +         +P
Sbjct: 341 RLIASFNHLAEVPEL-PQNL-KQLHVEYNPLR-EFPDIPESVEDLRMNSHLA-----EVP 392

Query: 93  PTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
               NL   + L +  N L  + P     +  L    ++   +  P  
Sbjct: 393 ELPQNL---KQLHVETNPLR-EFPDIPESVEDL---RMNSERVVDPYE 433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.5 bits (116), Expect = 7e-07
 Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 21/118 (17%)

Query: 34  SLTLS-NKGTEL-EYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHI 91
           S+    N   EL E + L  L T I   NN     +P    +L+    LN+  N L   +
Sbjct: 219 SIVAGNNILEELPELQNLPFL-TTIYADNNLLK-TLPDLPPSLE---ALNVRDNYLT-DL 272

Query: 92  PPTLGNLIVLESLDLSNNKLSG-------------QIPQQLGELTTLEVFDVSDNLLT 136
           P    +L  L+  +   + LS              +I        +LE  +VS+N L 
Sbjct: 273 PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI 330

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 1/71 (1%)

Query: 67  IPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLE 126
           I     +   L+     +++L   +P    N+        + ++     P   GE   + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 127 VFDVSDNLLTG 137
           V  + D L   
Sbjct: 62  VSRLRDCLDRQ 72

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 12/104 (11%)

Query: 34  SLTLS-NKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIP 92
            L +  N   E       ++     L  NS + E+P    NLK    L++ TN L+   P
Sbjct: 361 QLHVEYNPLREFPDI-PESVED---LRMNSHLAEVPELPQNLK---QLHVETNPLR-EFP 412

Query: 93  PTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
               ++   E L +++ ++             LE      +   
Sbjct: 413 DIPESV---EDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.4 bits (141), Expect = 4e-10
 Identities = 30/121 (24%), Positives = 45/121 (37%), Gaps = 29/121 (23%)

Query: 34  SLTLS-NKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLK----------------- 75
            L    N+ T L     S L   + +S+N     +PT  + L                  
Sbjct: 165 KLWAYNNQLTSLPML-PSGL-QELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPS 221

Query: 76  GLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLL 135
           GL+ L +S N L   +P        L+ L +S N+L+  +P     L +L    V  N L
Sbjct: 222 GLKELIVSGNRLT-SLPVLPSE---LKELMVSGNRLT-SLPMLPSGLLSL---SVYRNQL 273

Query: 136 T 136
           T
Sbjct: 274 T 274

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 57.2 bits (138), Expect = 1e-09
 Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 23/172 (13%)

Query: 37  LSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLK-----------------GLRT 79
            +N+ T L     S L   +I+S N     +P   + LK                 GL +
Sbjct: 209 YNNRLTSLP-ALPSGL-KELIVSGNRL-TSLPVLPSELKELMVSGNRLTSLPMLPSGLLS 265

Query: 80  LNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPI 139
           L++  N L   +P +L +L    +++L  N LS +  Q L E+T+   +  S  ++   +
Sbjct: 266 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGY--SGPIIRFDM 322

Query: 140 PRGKQFNTFGKGSFDGNPGLCGQPLSKQCDNSATSPPEEDPHSESLFAFGWK 191
                              L      +           ++ ++++   F  +
Sbjct: 323 AGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDR 374

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.8 bits (137), Expect = 1e-09
 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 14/104 (13%)

Query: 34  SLTLSNKG-TELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIP 92
            L +   G T L     +++ T +++ +N+    +P     L   RTL +S N L   +P
Sbjct: 44  VLNVGESGLTTLPDCLPAHI-TTLVIPDNNLT-SLPALPPEL---RTLEVSGNQLT-SLP 97

Query: 93  PTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
                L+ L         L   +P  L +L       +  N LT
Sbjct: 98  VLPPGLLELSIFSNPLTHLP-ALPSGLCKL------WIFGNQLT 134

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.8 bits (137), Expect = 1e-09
 Identities = 24/120 (20%), Positives = 38/120 (31%), Gaps = 27/120 (22%)

Query: 34  SLTLS-NKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQG--- 89
           +L +  N  T L       L   + +S N     +P     L  L   +     L     
Sbjct: 65  TLVIPDNNLTSLP-ALPPEL-RTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPS 121

Query: 90  -------------HIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
                         +P     L   + L +S+N+L+  +P    EL  L      +N LT
Sbjct: 122 GLCKLWIFGNQLTSLPVLPPGL---QELSVSDNQLA-SLPALPSELCKL---WAYNNQLT 174

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.4 bits (123), Expect = 8e-08
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 7/66 (10%)

Query: 71  IANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDV 130
                G   LN+  + L   +P  L     + +L + +N L+  +P    EL TL   +V
Sbjct: 36  ACLNNGNAVLNVGESGLT-TLPDCLPAH--ITTLVIPDNNLT-SLPALPPELRTL---EV 88

Query: 131 SDNLLT 136
           S N LT
Sbjct: 89  SGNQLT 94

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.8 bits (140), Expect = 5e-10
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 3/99 (3%)

Query: 49  LSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLS 107
           L+  + ++ LS N         +     L+ L L ++ +   I      +L  LE LDLS
Sbjct: 24  LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLS 82

Query: 108 NNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFN 146
           +N LS       G L++L+  ++  N     +     F 
Sbjct: 83  DNHLSSLSSSWFGPLSSLKYLNLMGNPYQT-LGVTSLFP 120

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.4 bits (139), Expect = 8e-10
 Identities = 26/141 (18%), Positives = 56/141 (39%), Gaps = 6/141 (4%)

Query: 1   MKDVNANNLTYLQDPL--LGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIIL 58
           + D + N L  L   +  L  V +   T  G   ++ + S+  +EL   +   +   + +
Sbjct: 235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI-RRLHI 293

Query: 59  SNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQ 118
                  ++ T  + L+ ++ + +  + +         +L  LE LDLS N +  +  + 
Sbjct: 294 PQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353

Query: 119 ---LGELTTLEVFDVSDNLLT 136
               G   +L+   +S N L 
Sbjct: 354 SACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 6/114 (5%)

Query: 34  SLTLS-NKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGH 90
           SL LS NK T + +  L     +  +IL ++        +  +L  L  L+LS N L   
Sbjct: 30  SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-S 88

Query: 91  IPP-TLGNLIVLESLDLSNNKLSG-QIPQQLGELTTLEVFDVSDNLLTGPIPRG 142
           +     G L  L+ L+L  N      +      LT L+   + +      I R 
Sbjct: 89  LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.9 bits (135), Expect = 3e-09
 Identities = 27/136 (19%), Positives = 53/136 (38%), Gaps = 9/136 (6%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNN- 61
            V  + +  +       +   +L +   S   +               +L T ++LS N 
Sbjct: 316 TVENSKVFLVPCSFSQHL--KSLEFLDLSENLMVEEYLKNSACKGAWPSLQT-LVLSQNH 372

Query: 62  -SFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLG 120
              + +    +  LK L +L++S N+    +P +      +  L+LS+  +   +   + 
Sbjct: 373 LRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI- 429

Query: 121 ELTTLEVFDVSDNLLT 136
              TLEV DVS+N L 
Sbjct: 430 -PQTLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.3 bits (131), Expect = 9e-09
 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 9/112 (8%)

Query: 33  YSLTLS-NKGTELEYEKLSNL--ITAIILSNNSFVGEI---PTSIANLKGLRTLNLSTNS 86
             +T+  +K   +      +L  +  + LS N  V E             L+TL LS N 
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372

Query: 87  LQ--GHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
           L+        L  L  L SLD+S N     +P        +   ++S   + 
Sbjct: 373 LRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 27/132 (20%), Positives = 47/132 (35%), Gaps = 18/132 (13%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELEYEKLSNLITAIILSNN 61
           D++ N    + D    P     + +       L LS      ++      L   + +SNN
Sbjct: 393 DISRNTFHPMPDSCQWP---EKMRF-------LNLSSTGIRVVKTCIPQTL-EVLDVSNN 441

Query: 62  SFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGE 121
           +           L  L+ L +S N L+  +P       VL  + +S N+L          
Sbjct: 442 NL-DSFS---LFLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDR 495

Query: 122 LTTLEVFDVSDN 133
           LT+L+   +  N
Sbjct: 496 LTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.3 bits (123), Expect = 9e-08
 Identities = 33/131 (25%), Positives = 47/131 (35%), Gaps = 35/131 (26%)

Query: 48  KLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLS 107
            L NL T++ +S N+F   +P S    + +R LNLS+  ++  +         LE LD+S
Sbjct: 385 TLKNL-TSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDVS 439

Query: 108 NNKLSGQIPQQLGELTT-------------------LEVFDVSDNLLTGPIPRGKQFNTF 148
           NN L       L  L                     L V  +S N L           + 
Sbjct: 440 NNNLD-SFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLK----------SV 488

Query: 149 GKGSFDGNPGL 159
             G FD    L
Sbjct: 489 PDGIFDRLTSL 499

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 48  KLSNLITAIILSNNSFVGEIP-TSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDL 106
            L+NL T + + N     EI     A L  L  L +   SL+ +   +L ++  +  L L
Sbjct: 121 NLTNLQT-LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179

Query: 107 SNNKLSGQIPQQLGELTTLEVFDVSDNLLTG 137
             ++ +  +      L+++   ++ D  L  
Sbjct: 180 HLSESAFLLEIFADILSSVRYLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 11/90 (12%), Positives = 27/90 (30%), Gaps = 1/90 (1%)

Query: 47  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDL 106
             L++L   + +   S       S+ +++ +  L L  +     +      L  +  L+L
Sbjct: 145 AGLTSL-NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203

Query: 107 SNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
            +  L+      L                +
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 57.7 bits (139), Expect = 7e-10
 Identities = 28/148 (18%), Positives = 50/148 (33%), Gaps = 22/148 (14%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELEYEKLSNLITAIILSNN 61
           + + N LT L      P    +L         L++  N+ T L  E   +L  A+ +S N
Sbjct: 146 NADNNQLTML------PELPTSLE-------VLSVRNNQLTFLP-ELPESL-EALDVSTN 190

Query: 62  SFVGEIPTSIANLKGLRT----LNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQ 117
                +P                    N +  HIP  + +L    ++ L +N LS +I +
Sbjct: 191 LLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248

Query: 118 QLGELTTLEVFDVSDNLLTGPIPRGKQF 145
            L + T    +       +    +    
Sbjct: 249 SLSQQTAQPDYHGPRIYFSMSDGQQNTL 276

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.5 bits (136), Expect = 2e-09
 Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 27/135 (20%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELEYEKLSNLITAIILSNN 61
            +N  NL+ L D L      P +T        L ++ N    L  E  ++L   +   +N
Sbjct: 65  QLNRLNLSSLPDNLP-----PQIT-------VLEITQNALISLP-ELPASL-EYLDACDN 110

Query: 62  SFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGE 121
                +P   A+LK    L++  N L   +P     L   E ++  NN+L+  +P+    
Sbjct: 111 RLS-TLPELPASLK---HLDVDNNQLT-MLPELPALL---EYINADNNQLT-MLPELPTS 161

Query: 122 LTTLEVFDVSDNLLT 136
           L  L    V +N LT
Sbjct: 162 LEVL---SVRNNQLT 173

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.7 bits (108), Expect = 6e-06
 Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 12/99 (12%)

Query: 38  SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGN 97
            N    L      N I+           +  ++    +       + N     +   L  
Sbjct: 7   INNNFSLSQNSFYNTISGTY-------ADYFSAWDKWEKQALPGENRNEAVSLLKECL-- 57

Query: 98  LIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
           +     L L+   LS  +P  L     + V +++ N L 
Sbjct: 58  INQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI 93

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 57.2 bits (138), Expect = 7e-10
 Identities = 30/136 (22%), Positives = 45/136 (33%), Gaps = 10/136 (7%)

Query: 7   NNLTYLQDPL---LGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSF 63
           +N    +  L   L P+++P L         +   +            L   + LS+NS 
Sbjct: 182 DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL-QGLDLSHNSL 240

Query: 64  VGEIPTSI-ANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGEL 122
                         L +LNLS   L+  +P  L     L  LDLS N+L    P    EL
Sbjct: 241 RDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAK--LSVLDLSYNRLDR-NP-SPDEL 295

Query: 123 TTLEVFDVSDNLLTGP 138
             +    +  N     
Sbjct: 296 PQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.1 bits (130), Expect = 7e-09
 Identities = 23/103 (22%), Positives = 31/103 (30%), Gaps = 10/103 (9%)

Query: 44  LEYEKLSNLITAIILSNNSFVGEIPTSIANLKG--LRTLNLSTNSLQGH--IPPTLGNLI 99
           L    L  L     L N    G  P  +    G  L  LNL   S          L   +
Sbjct: 92  LGISGLQELT----LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWL 147

Query: 100 V--LESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
              L+ L ++         +Q+     L   D+SDN   G   
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.0 bits (127), Expect = 2e-08
 Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 11/114 (9%)

Query: 34  SLTLS-NKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSIA----NLKGLRTLNLSTN- 85
            L+++         E++     ++ + LS+N  +GE     A        L+ L L    
Sbjct: 153 VLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212

Query: 86  --SLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGE-LTTLEVFDVSDNLLT 136
             +  G         + L+ LDLS+N L         +  + L   ++S   L 
Sbjct: 213 METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.0 bits (114), Expect = 9e-07
 Identities = 19/104 (18%), Positives = 41/104 (39%), Gaps = 9/104 (8%)

Query: 37  LSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLG 96
           L   G +L    L N+      + ++++ E+   +    GL+ L+++           + 
Sbjct: 116 LEATGPDLNILNLRNVS---WATRDAWLAELQQWL--KPGLKVLSIAQAHSLNFSCEQVR 170

Query: 97  NLIVLESLDLSNNKLSGQIP----QQLGELTTLEVFDVSDNLLT 136
               L +LDLS+N   G+          +  TL+V  + +  + 
Sbjct: 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.0 bits (138), Expect = 9e-10
 Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 28/163 (17%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELEYEKLSNL--ITAIILS 59
           D+  N +  L         +P L         L L+ N  + +E    +NL  +  + L 
Sbjct: 38  DLGKNRIKTLNQDEFA--SFPHLEE-------LELNENIVSAVEPGAFNNLFNLRTLGLR 88

Query: 60  NNSFVGEIPTSI-ANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLSNNKLSGQIPQ 117
           +N     IP  +   L  L  L++S N +   +      +L  L+SL++ +N L   I  
Sbjct: 89  SNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-YISH 145

Query: 118 Q-LGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGL 159
           +    L +LE   +    LT          +    +     GL
Sbjct: 146 RAFSGLNSLEQLTLEKCNLT----------SIPTEALSHLHGL 178

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.3 bits (131), Expect = 7e-09
 Identities = 24/113 (21%), Positives = 37/113 (32%), Gaps = 14/113 (12%)

Query: 49  LSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLS 107
           +      + L  N          A+   L  L L+ N +   + P    NL  L +L L 
Sbjct: 30  IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLR 88

Query: 108 NNKLSGQIPQQ-LGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGL 159
           +N+L   IP      L+ L   D+S+N +                 F     L
Sbjct: 89  SNRLK-LIPLGVFTGLSNLTKLDISENKIV----------ILLDYMFQDLYNL 130

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 15/144 (10%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELEYEKLSNL--ITAIILS 59
           D++ N +  L D +   +    L        SL +  N    + +   S L  +  + L 
Sbjct: 110 DISENKIVILLDYMFQDL--YNLK-------SLEVGDNDLVYISHRAFSGLNSLEQLTLE 160

Query: 60  NNSFVGEIPT-SIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQ 118
             +    IPT ++++L GL  L L   ++      +   L  L+ L++S+      +   
Sbjct: 161 KCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219

Query: 119 LGELTTLEVFDVSDNLLTGPIPRG 142
                 L    ++   LT  +P  
Sbjct: 220 CLYGLNLTSLSITHCNLTA-VPYL 242

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 7/107 (6%)

Query: 34  SLTLS-NKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSI-ANLKGLRTLNLSTNSLQG 89
           SL+++    T + Y  + +L  +  + LS N     I  S+   L  L+ + L    L  
Sbjct: 228 SLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA- 285

Query: 90  HIPP-TLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLL 135
            + P     L  L  L++S N+L+         +  LE   +  N L
Sbjct: 286 VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 54  TAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSG 113
            A++     FV  +P  I      R L+L  N ++        +   LE L+L+ N +S 
Sbjct: 14  RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70

Query: 114 QIPQQLGELTTLEVFDVSDNLLT 136
             P     L  L    +  N L 
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLK 93

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 16/115 (13%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELEYEKLSNL--ITAIILS 59
            +   NLT +    +       L +       L LS N  + +E   L  L  +  I L 
Sbjct: 230 SITHCNLTAVPYLAVRH--LVYLRF-------LNLSYNPISTIEGSMLHELLRLQEIQLV 280

Query: 60  NNSFVGEIPTSI-ANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLSNNKLS 112
               +  +       L  LR LN+S N L   +      ++  LE+L L +N L+
Sbjct: 281 GGQ-LAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.9 bits (130), Expect = 7e-09
 Identities = 34/133 (25%), Positives = 48/133 (36%), Gaps = 19/133 (14%)

Query: 34  SLTLS-NKGTELEYEKLSNL--ITAIILSNN--SFVGEIPTSIANLKGLRTLNLSTNSLQ 88
            L L  NK   L +     L  +T + LS+N  SF G    S      L+ L+LS N + 
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91

Query: 89  GHIPPTLGNLIVLESLDLSNNKLSGQIPQQ--LGELTTLEVFDVSDNLLTGPIPRGKQFN 146
             +      L  LE LD  ++ L  Q+ +      L  L   D+S               
Sbjct: 92  -TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTR---------- 139

Query: 147 TFGKGSFDGNPGL 159
               G F+G   L
Sbjct: 140 VAFNGIFNGLSSL 152

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 3/86 (3%)

Query: 53  ITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQ-GHIPP-TLGNLIVLESLDLSNNK 110
            T + L +N            L  L  L+LS+N L        +      L+ LDLS N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 111 LSGQIPQQLGELTTLEVFDVSDNLLT 136
           +   +      L  LE  D   + L 
Sbjct: 90  VI-TMSSNFLGLEQLEHLDFQHSNLK 114

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 26/140 (18%), Positives = 46/140 (32%), Gaps = 15/140 (10%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELEY--EKLSNLITAIILS 59
            +++N L++            +L Y       L LS N    +      L  L   +   
Sbjct: 58  SLSSNGLSFKGCCSQSDFGTTSLKY-------LDLSFNGVITMSSNFLGLEQL-EHLDFQ 109

Query: 60  NNSFVGEIPTSI-ANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLSNNKLSGQIPQ 117
           +++       S+  +L+ L  L++S    +          L  LE L ++ N        
Sbjct: 110 HSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLP 168

Query: 118 Q-LGELTTLEVFDVSDNLLT 136
               EL  L   D+S   L 
Sbjct: 169 DIFTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 8/91 (8%)

Query: 47  EKLSNLITAIILSNNSFVGEIPTSI-ANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESL 104
            +L NL T + LS      ++  +   +L  L+ LN+S N+    +       L  L+ L
Sbjct: 172 TELRNL-TFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVL 228

Query: 105 DLSNNKLSGQIPQQL--GELTTLEVFDVSDN 133
           D S N +     +Q      ++L   +++ N
Sbjct: 229 DYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 5/85 (5%)

Query: 54  TAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSG 113
           T I  ++      +PT I        L L +N LQ         L  L  L LS+N LS 
Sbjct: 10  TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 114 Q--IPQQLGELTTLEVFDVSDNLLT 136
           +    Q     T+L+  D+S N + 
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVI 91

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 27/132 (20%), Positives = 42/132 (31%), Gaps = 14/132 (10%)

Query: 5   NANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELEY-EKLSNLITAIILSNNS 62
               L Y+ +     +    L Y       L L      ++     L  L   + +S N 
Sbjct: 180 ELKKLEYISEGAFEGL--FNLKY-------LNLGMCNIKDMPNLTPLVGL-EELEMSGNH 229

Query: 63  FVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLSNNKLSGQIPQQLGE 121
           F    P S   L  L+ L +  + +   I       L  L  L+L++N LS         
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288

Query: 122 LTTLEVFDVSDN 133
           L  L    +  N
Sbjct: 289 LRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.7 bits (124), Expect = 5e-08
 Identities = 29/161 (18%), Positives = 57/161 (35%), Gaps = 25/161 (15%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELEY---EKLSNLITAIIL 58
           ++  N LT +       +    L         L L  N    +      ++ +L+   + 
Sbjct: 129 ELFDNWLTVIPSGAFEYL--SKLR-------ELWLRNNPIESIPSYAFNRVPSLMRLDLG 179

Query: 59  SNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQ 118
                      +   L  L+ LNL   +++  + P L  L+ LE L++S N      P  
Sbjct: 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DM-PNLTPLVGLEELEMSGNHFPEIRPGS 237

Query: 119 LGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGL 159
              L++L+   V ++ ++             + +FDG   L
Sbjct: 238 FHGLSSLKKLWVMNSQVS----------LIERNAFDGLASL 268

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 47  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLD 105
           + + +    + L  N+       +  +L  L  L L  NS++  I       L  L +L+
Sbjct: 71  QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLE 129

Query: 106 LSNNKLSGQIPQQ-LGELTTLEVFDVSDNLLT 136
           L +N L+  IP      L+ L    + +N + 
Sbjct: 130 LFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE 160

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 8/95 (8%)

Query: 50  SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLSN 108
           SN  + ++ +      E+P  I      R LNL  N++Q  I   T  +L  LE L L  
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGR 108

Query: 109 NKLSGQIPQQ-LGELTTLEVFDVSDNLLTGPIPRG 142
           N +  QI       L +L   ++ DN LT  IP G
Sbjct: 109 NSIR-QIEVGAFNGLASLNTLELFDNWLTV-IPSG 141

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 7/105 (6%)

Query: 35  LTLS-NKGTELEYEKLSNLITAIILSNNSFVGEIPT-SIANLKGLRTLNLSTNSLQGHIP 92
           + ++    T +      +L T + L  N    ++   S+  L  L  L LS NS+   + 
Sbjct: 176 IRIADTNITTIPQGLPPSL-TELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSIS-AVD 232

Query: 93  P-TLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
             +L N   L  L L+NNKL  ++P  L +   ++V  + +N ++
Sbjct: 233 NGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 49  LSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLS 107
           L      + L NN           NLK L TL L  N +   I P     L+ LE L LS
Sbjct: 50  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLS 108

Query: 108 NNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG 142
            N+L  ++P+++    TL+   V +N +T  + + 
Sbjct: 109 KNQLK-ELPEKM--PKTLQELRVHENEITK-VRKS 139

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 19/130 (14%)

Query: 34  SLTLS-NKGTELEYEKLSNLITAIILSNNSFVGEIPTSI-ANLKGLRTLNLSTNSLQ-GH 90
            L LS N+  EL  +    L   + +  N    ++  S+   L  +  + L TN L+   
Sbjct: 104 RLYLSKNQLKELPEKMPKTL-QELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSG 161

Query: 91  IPP-TLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFG 149
           I       +  L  + +++  ++  IPQ L    +L    +  N +T             
Sbjct: 162 IENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT----------KVD 208

Query: 150 KGSFDGNPGL 159
             S  G   L
Sbjct: 209 AASLKGLNNL 218

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 23/139 (16%), Positives = 48/139 (34%), Gaps = 23/139 (16%)

Query: 7   NNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELEYEKLSNL--ITAIILSNNSF 63
           N +T +    L       L         L LS N  + ++   L+N   +  + L+NN  
Sbjct: 202 NKITKVDAASL--KGLNNLAK-------LGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252

Query: 64  VGEIPTSIANLKGLRTLNLSTNSLQGHIPPT-------LGNLIVLESLDLSNNKLS-GQI 115
           V ++P  +A+ K ++ + L  N++   I                   + L +N +   +I
Sbjct: 253 V-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 310

Query: 116 PQQL-GELTTLEVFDVSDN 133
                  +       + + 
Sbjct: 311 QPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 50  SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGH-IPP-TLGNLIVLESLDLS 107
           +N I+AI   +N F    P           ++L +N +Q   I P T   + V  ++ L 
Sbjct: 272 NNNISAI--GSNDFCP--PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327

Query: 108 NNK 110
           N K
Sbjct: 328 NYK 330

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.2 bits (127), Expect = 2e-08
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 49  LSNLITAIILSNNSFVGEIPT-SIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDL 106
             NL T + + N   +  +    +  L  LR L +  + L+  + P        L  L+L
Sbjct: 30  AENL-TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNL 87

Query: 107 SNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
           S N L   +  +  +  +L+   +S N L 
Sbjct: 88  SFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 2e-07
 Identities = 17/97 (17%), Positives = 29/97 (29%), Gaps = 3/97 (3%)

Query: 66  EIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLSNNKLSGQIPQQLGELTT 124
           +    +   + L  L +       H+    L  L  L +L +  + L    P        
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 125 LEVFDVSDNLLTGPIPRGKQFNTFGKG-SFDGNPGLC 160
           L   ++S N L   +          +     GNP  C
Sbjct: 82  LSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLHC 117

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 2/94 (2%)

Query: 43  ELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLE 102
           EL     S++   ++ ++ S  G++       + L  L+     L   I   L  L  L+
Sbjct: 10  ELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLK 67

Query: 103 SLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
            L+LS+N++SG +     +   L   ++S N + 
Sbjct: 68  KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 47  EKLSNLITAIILSNNSFVGEIPTSIANL---KGLRTLNLSTNSLQGHIPPTLGNLIVLES 103
           ++   L   +   N        TSIANL     L+ L LS N + G +         L  
Sbjct: 39  DEFEEL-EFLSTINVGL-----TSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92

Query: 104 LDLSNNKLSG-QIPQQLGELTTLEVFDVSDN 133
           L+LS NK+      + L +L  L+  D+ + 
Sbjct: 93  LNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.9 bits (122), Expect = 3e-08
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 43  ELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLE 102
           EL     + +   ++ +  S  G+I    A    L  L+L    L   +   L  L  L+
Sbjct: 17  ELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLK 74

Query: 103 SLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
            L+LS N++ G +     +L  L   ++S N L 
Sbjct: 75  KLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 9e-06
 Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 17/109 (15%)

Query: 35  LTLSNKGTELEY-----EKLSNLITAIILSNNSFVGEIPTSIANL---KGLRTLNLSTNS 86
           L L N  +          +  NL   + L N         S++NL     L+ L LS N 
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEF-LSLINVGL-----ISVSNLPKLPKLKKLELSENR 82

Query: 87  LQGHIPPTLGNLIVLESLDLSNNKLS--GQIPQQLGELTTLEVFDVSDN 133
           + G +      L  L  L+LS NKL     + + L +L  L+  D+ + 
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNC 130

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 14/132 (10%)

Query: 5   NANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELEY-EKLSNLITAIILSNNS 62
               L+Y+ +     +    L Y       L L+     E+     L  L   + LS N 
Sbjct: 169 ELKRLSYISEGAFEGL--SNLRY-------LNLAMCNLREIPNLTPLIKL-DELDLSGNH 218

Query: 63  FVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLSNNKLSGQIPQQLGE 121
                P S   L  L+ L +  + +Q  I      NL  L  ++L++N L+         
Sbjct: 219 LSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277

Query: 122 LTTLEVFDVSDN 133
           L  LE   +  N
Sbjct: 278 LHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.1 bits (125), Expect = 4e-08
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 2/91 (2%)

Query: 47  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLD 105
           + +S     + L  N        S  +L+ L  L LS N ++  I       L  L +L+
Sbjct: 60  DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLE 118

Query: 106 LSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
           L +N+L+         L+ L+   + +N + 
Sbjct: 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 28/140 (20%), Positives = 49/140 (35%), Gaps = 17/140 (12%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELEYEKLSNL--ITAIILS 59
           +++ N +  ++           L         L LS N    +E    + L  +  + L 
Sbjct: 70  NLHENQIQIIKVNSFK--HLRHLEI-------LQLSRNHIRTIEIGAFNGLANLNTLELF 120

Query: 60  NNSFVGEIPTSI-ANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLS-NNKLSGQIP 116
           +N  +  IP      L  L+ L L  N ++  IP      +  L  LDL    +LS    
Sbjct: 121 DNR-LTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISE 178

Query: 117 QQLGELTTLEVFDVSDNLLT 136
                L+ L   +++   L 
Sbjct: 179 GAFEGLSNLRYLNLAMCNLR 198

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.8 bits (124), Expect = 5e-08
 Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 4/97 (4%)

Query: 49  LSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSN 108
           LS   T + +S N       + I +L  LR L +S N +Q            LE LDLS+
Sbjct: 19  LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78

Query: 109 NKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQF 145
           NKL          L  L   D+S N     +P  K+F
Sbjct: 79  NKLVKISCHPTVNLKHL---DLSFNAFDA-LPICKEF 111

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.7 bits (116), Expect = 6e-07
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 6/96 (6%)

Query: 48  KLSNLITAIILSNNSFVGEIPTSI-ANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDL 106
           ++ +L   + +S NS   +      +  K L +LN+S+N L   I   L     ++ LDL
Sbjct: 372 QMKSL-QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDL 428

Query: 107 SNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG 142
            +NK+   IP+Q+ +L  L+  +V+ N L   +P G
Sbjct: 429 HSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDG 462

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 29/145 (20%), Positives = 49/145 (33%), Gaps = 18/145 (12%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELE---YEKLSNLITAIIL 58
           +++ N ++ L    +       L         L +S N+   L+   ++    L   + L
Sbjct: 27  NISQNYISELWTSDIL--SLSKLRI-------LIISHNRIQYLDISVFKFNQEL-EYLDL 76

Query: 59  SNNSFVGEIPTSIANLKGLRTLNLSTNSLQG-HIPPTLGNLIVLESLDLSNNKLSGQIPQ 117
           S+N  V     S      L+ L+LS N+     I    GN+  L+ L LS   L      
Sbjct: 77  SHNKLVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVL 133

Query: 118 QLGELTTLEVFDVSDNLLTGPIPRG 142
            +  L   +V  V            
Sbjct: 134 PIAHLNISKVLLVLGETYGEKEDPE 158

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.4 bits (110), Expect = 4e-06
 Identities = 25/150 (16%), Positives = 54/150 (36%), Gaps = 13/150 (8%)

Query: 1   MKDVNANNLTYLQDPLLGPVRY-----PALTYYGFSYYSLTLSNKGTELEYEKLSNLITA 55
           +   + +N+            Y      AL+ +                 YE  SN+   
Sbjct: 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI---YEIFSNMNIK 305

Query: 56  IILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQI 115
               + + +  +    + +     L+ S N L   +    G+L  LE+L L  N+L  ++
Sbjct: 306 NFTVSGTRMVHML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-EL 363

Query: 116 PQQLG---ELTTLEVFDVSDNLLTGPIPRG 142
            +      ++ +L+  D+S N ++    +G
Sbjct: 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 1/122 (0%)

Query: 16  LLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLS-NLITAIILSNNSFVGEIPTSIANL 74
           +L  V +  + Y+  S   L       + +Y   S   ++   + ++ F           
Sbjct: 240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF 299

Query: 75  KGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNL 134
             +   N + +  +         +     LD SNN L+  + +  G LT LE   +  N 
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359

Query: 135 LT 136
           L 
Sbjct: 360 LK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 24/131 (18%), Positives = 53/131 (40%), Gaps = 6/131 (4%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNS 62
            +  N L  L        +  +L     S  S++      + +     +L  ++ +S+N 
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD--EKKGDCSWTKSL-LSLNMSSNI 410

Query: 63  FVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGEL 122
               I   +     ++ L+L +N ++  IP  +  L  L+ L++++N+L          L
Sbjct: 411 LTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRL 467

Query: 123 TTLEVFDVSDN 133
           T+L+   +  N
Sbjct: 468 TSLQKIWLHTN 478

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.2 bits (123), Expect = 7e-08
 Identities = 29/167 (17%), Positives = 54/167 (32%), Gaps = 32/167 (19%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELEYEKLSNL--ITAIILS 59
            ++   LT +   L        L         L L  NK   +E E L     +  + L 
Sbjct: 178 RISEAKLTGIPKDLP-----ETLN-------ELHLDHNKIQAIELEDLLRYSKLYRLGLG 225

Query: 60  NNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIP--- 116
           +N        S++ L  LR L+L  N L   +P  L +L +L+ + L  N ++ ++    
Sbjct: 226 HNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVND 283

Query: 117 ----QQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGL 159
                   +        + +N +         +      +F      
Sbjct: 284 FCPVGFGVKRAYYNGISLFNNPVP--------YWEVQPATFRCVTDR 322

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 30/145 (20%), Positives = 57/145 (39%), Gaps = 19/145 (13%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELEYEKLSNL--ITAIILS 59
           D+  N+++ L+           L         L L  NK +++  +  S L  +  + +S
Sbjct: 60  DLQNNDISELRKDDFK--GLQHLYA-------LVLVNNKISKIHEKAFSPLRKLQKLYIS 110

Query: 60  NNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLSNNKL-SGQIPQ 117
            N  V EIP ++     L  L +  N ++  +P      L  +  +++  N L +     
Sbjct: 111 KNHLV-EIPPNL--PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166

Query: 118 QLGELTTLEVFDVSDNLLTGPIPRG 142
              +   L    +S+  LTG IP+ 
Sbjct: 167 GAFDGLKLNYLRISEAKLTG-IPKD 190

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 6/90 (6%)

Query: 54  TAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLSNNKLS 112
             +  S+      +P  I+       L+L  N +   +       L  L +L L NNK+S
Sbjct: 36  RVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS 91

Query: 113 GQIPQQLGELTTLEVFDVSDNLLTGPIPRG 142
               +    L  L+   +S N L   IP  
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHLVE-IPPN 120

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 8/106 (7%)

Query: 34  SLTLS-NKGTELEYEKLSNLITAIILSNNSFVGEIPTSI-ANLKGLRTLNLSTNSLQ-GH 90
            L +S N   E+     S+L   + + +N    ++P  + + L+ +  + +  N L+   
Sbjct: 106 KLYISKNHLVEIPPNLPSSL-VELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSG 163

Query: 91  IPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
             P   + + L  L +S  KL+  IP+ L    TL    +  N + 
Sbjct: 164 FEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ 206

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 51.3 bits (123), Expect = 7e-08
 Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 10/117 (8%)

Query: 34  SLTLS-NKGTELE---YEKLSNLITAIILSNNSFVGEIPTSI-ANLKGLRTLNLSTNSLQ 88
            + LS N   EL    + +L +L   + +   +    I  +    L  L  L L  N   
Sbjct: 34  YVDLSLNSIAELNETSFSRLQDL-QFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL 92

Query: 89  GHIPP-TLGNLIVLESLDLSNNKL-SGQIPQQL-GELTTLEVFDVSDNLLTGPIPRG 142
             +       L  LE L L+   L    +       LT+LE+  + DN +    P  
Sbjct: 93  -QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 14/112 (12%)

Query: 50  SNLITAIILSNNSFVGEIPTSI-ANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLS 107
           ++ +    LS +     +  S+ ++   L  L L+ N +   I       L  L  L+LS
Sbjct: 274 ASGVKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLS 331

Query: 108 NNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGL 159
            N L     +    L  LEV D+S N +             G  SF G P L
Sbjct: 332 QNFLGSIDSRMFENLDKLEVLDLSYNHIR----------ALGDQSFLGLPNL 373

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 9/106 (8%)

Query: 34  SLTLS-NKGTELE---YEKLSNLITAIILSNNSFVGEIPTSI-ANLKGLRTLNLSTNSLQ 88
            LTL+ N+  +++   +  L++L   + LS N F+G I + +  NL  L  L+LS N ++
Sbjct: 303 QLTLAQNEINKIDDNAFWGLTHL-LKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIR 360

Query: 89  GHIPP-TLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDN 133
             +   +   L  L+ L L  N+L          LT+L+   +  N
Sbjct: 361 -ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 15/78 (19%)

Query: 64  VGEIPTSIANLKGLRTLNLSTNSLQGHIPPT-LGNLIVLESLDLSNNKLSGQIP----QQ 118
           V E+P  +        ++LS NS+   +  T    L  L+ L +        I     + 
Sbjct: 25  VPELPAHV------NYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG 77

Query: 119 LGELTTLEVFDVSDNLLT 136
           L  L  L    +  N   
Sbjct: 78  LSSLIIL---KLDYNQFL 92

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 51.6 bits (123), Expect = 7e-08
 Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 9/105 (8%)

Query: 34  SLTLS-NKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHI 91
            L L+ NK T+++    L NL   + L  N  + ++ +S+ +LK L++L+L  N +   I
Sbjct: 69  KLFLNGNKLTDIKPLTNLKNL-GWLFLDENK-IKDL-SSLKDLKKLKSLSLEHNGIS-DI 124

Query: 92  PPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
              L +L  LESL L NNK++      L  LT L+   + DN ++
Sbjct: 125 NG-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS 166

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.6 bits (102), Expect = 3e-05
 Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 6/84 (7%)

Query: 53  ITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLS 112
           +   I  +   + +I             NL   S+      T   L  ++ +  +N+ + 
Sbjct: 1   MGETITVSTP-IKQI-FPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK 56

Query: 113 GQIPQQLGELTTLEVFDVSDNLLT 136
             + Q +  L  +    ++ N LT
Sbjct: 57  -SV-QGIQYLPNVTKLFLNGNKLT 78

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.4 bits (99), Expect = 7e-05
 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 7/109 (6%)

Query: 34  SLTLS-NKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHI 91
           SL L  NK T++    +L+ L   + L +N  + +I   +A L  L+ L LS N +   +
Sbjct: 135 SLYLGNNKITDITVLSRLTKL-DTLSLEDNQ-ISDIV-PLAGLTKLQNLYLSKNHIS-DL 190

Query: 92  PPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140
              L  L  L+ L+L + +   +       L        +D  L  P  
Sbjct: 191 RA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 39.7 bits (92), Expect = 6e-04
 Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 34  SLTLS-NKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHI 91
           +L+L  N+ +++     L+ L   + LS N  + ++  ++A LK L  L L +       
Sbjct: 157 TLSLEDNQISDIVPLAGLTKLQN-LYLSKNH-ISDLR-ALAGLKNLDVLELFSQECLNKP 213

Query: 92  PPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
                NL+V  ++  ++  L    P+ + +    E  +V  +L  
Sbjct: 214 INHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPE 256

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 9/105 (8%)

Query: 34  SLTLS-NKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHI 91
            L LS N    +     L ++   + L++   + ++   +A L  L+ L L  N +  +I
Sbjct: 89  ELELSGNPLKNVSAIAGLQSI-KTLDLTSTQ-ITDVT-PLAGLSNLQVLYLDLNQIT-NI 144

Query: 92  PPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
            P L  L  L+ L + N ++S   P  L  L+ L      DN ++
Sbjct: 145 SP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 7/90 (7%)

Query: 47  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDL 106
             L+N I  I    ++ V +  T  A+L G+ TL+     +   I   +  L  L  L+L
Sbjct: 16  PALANAIK-IAAGKSN-VTDTVT-QADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLEL 70

Query: 107 SNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
            +N+++   P  L  LT +   ++S N L 
Sbjct: 71  KDNQITDLAP--LKNLTKITELELSGNPLK 98

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 7/108 (6%)

Query: 34  SLTLS-NKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHI 91
            L++   + ++L     LS L T +   +N  + +I   +A+L  L  ++L  N +    
Sbjct: 155 YLSIGNAQVSDLTPLANLSKL-TTLKADDNK-ISDIS-PLASLPNLIEVHLKNNQISDVS 211

Query: 92  PPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPI 139
           P  L N   L  + L+N  ++ Q       L    V          P 
Sbjct: 212 P--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPA 257

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 6/82 (7%)

Query: 55  AIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQ 114
             I    +     P     L     +    +++      T  +L  + +L      ++  
Sbjct: 1   GSITQPTAINVIFP--DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-T 55

Query: 115 IPQQLGELTTLEVFDVSDNLLT 136
           I   +  L  L   ++ DN +T
Sbjct: 56  IE-GVQYLNNLIGLELKDNQIT 76

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 10/103 (9%)

Query: 34  SLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP 93
              L+ K T+L+    + L T +  S N    E+   ++  K L  LN  TN++   +  
Sbjct: 154 DCHLNKKITKLDVTPQTQLTT-LDCSFNKIT-ELD--VSQNKLLNRLNCDTNNIT-KLD- 207

Query: 94  TLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
            L   I L  LD S+NKL+ +I   +  LT L  FD S N LT
Sbjct: 208 -LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT 246

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 10/104 (9%)

Query: 34  SLTLS-NKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIP 92
               S N  TEL+   LS L T +              I      + +       +    
Sbjct: 237 YFDCSVNPLTELDVSTLSKL-TTLHCIQTDL-----LEIDLTHNTQLIYFQAEGCRKIKE 290

Query: 93  PTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
             + +   L  LD     ++ ++   L +   L    +++  LT
Sbjct: 291 LDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT 331

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 12/105 (11%)

Query: 34  SLTLSNKG-TEL-EYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHI 91
           SL   N   T++   EKL+ L T +I ++N+    +   ++    L  L   +N L  ++
Sbjct: 46  SLDCHNSSITDMTGIEKLTGL-TKLICTSNNIT-TLD--LSQNTNLTYLACDSNKLT-NL 100

Query: 92  PPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
              +  L  L  L+   NKL+ ++   + +   L   + + N LT
Sbjct: 101 D--VTPLTKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCARNTLT 140

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 5/81 (6%)

Query: 56  IILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQI 115
            + +          S   L  L +L+   +S+   +   +  L  L  L  ++N ++  +
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNNIT-TL 79

Query: 116 PQQLGELTTLEVFDVSDNLLT 136
              L + T L       N LT
Sbjct: 80  D--LSQNTNLTYLACDSNKLT 98

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 9/99 (9%)

Query: 38  SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGN 97
           +NK T+L+  +   L T +  + N+   EI   +++   L  L+   N         +  
Sbjct: 115 TNKLTKLDVSQNPLL-TYLNCARNTLT-EID--VSHNTQLTELDCHLNKKIT--KLDVTP 168

Query: 98  LIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
              L +LD S NK++ ++   + +   L   +   N +T
Sbjct: 169 QTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNIT 204

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 9/98 (9%)

Query: 39  NKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNL 98
            K  EL+    + L   +         E+   ++    L  L L+   L   +   + + 
Sbjct: 286 RKIKELDVTHNTQL-YLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHN 338

Query: 99  IVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
             L+SL   N  +       +G++  L     ++    
Sbjct: 339 TKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI 374

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.8 bits (117), Expect = 4e-07
 Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 48  KLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDL 106
            L NL T + L  N        +   L  L  L L  N +  H+ P    +L  L +L L
Sbjct: 151 DLGNL-THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYL 208

Query: 107 SNNKLSGQIPQQLGELTTLEVFDVSDN 133
             N LS    + L  L  L+   ++DN
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 26/113 (23%), Positives = 33/113 (29%), Gaps = 13/113 (11%)

Query: 49  LSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLS 107
           +      I L  N        S    + L  L L +N L   I       L +LE LDLS
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS 88

Query: 108 NNKLSGQIPQQ-LGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGL 159
           +N     +       L  L    +    L             G G F G   L
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ----------ELGPGLFRGLAAL 131

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.0 bits (117), Expect = 4e-07
 Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 9/132 (6%)

Query: 48  KLSNLITAIILSNNSFVGEIPTSI-ANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDL 106
            L+ L    + + ++F  +I     A L  L  L +  + LQ + P +L ++  +  L L
Sbjct: 147 HLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205

Query: 107 SNNKLSGQIPQQL-GELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLS 165
              +    + +      +++E  ++ D  L         F+    G  +           
Sbjct: 206 HMKQHI-LLLEIFVDVTSSVECLELRDTDLDTF-----HFSELSTGETNSLIKKFTFRNV 259

Query: 166 KQCDNSATSPPE 177
           K  D S     +
Sbjct: 260 KITDESLFQVMK 271

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.1 bits (107), Expect = 8e-06
 Identities = 18/120 (15%), Positives = 44/120 (36%), Gaps = 13/120 (10%)

Query: 34  SLTLS-NKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQG- 89
            L +  +     E + L ++  ++ +IL     +  +   +     +  L L    L   
Sbjct: 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237

Query: 90  ---HIPP----TLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG 142
               +      +L       ++ +++  L  Q+ + L +++ L   + S N L   +P G
Sbjct: 238 HFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDG 295

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.7 bits (106), Expect = 9e-06
 Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 25/144 (17%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELE---YEKLSNLITAIIL 58
           +++A++L   +   L  +    +++       L L   +   L     +  S++   + L
Sbjct: 180 EIDASDLQSYEPKSLKSI--QNVSH-------LILHMKQHILLLEIFVDVTSSV-ECLEL 229

Query: 59  SNNSFVGEIPTSI--------ANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNK 110
            +        + +              R + ++  SL   +   L  +  L  L+ S N+
Sbjct: 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQ 288

Query: 111 LSGQIPQQ-LGELTTLEVFDVSDN 133
           L   +P      LT+L+   +  N
Sbjct: 289 LKS-VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 6/86 (6%)

Query: 58  LSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLSNNKLSGQIP 116
            S+ S    IP+ +   + +++L+LS N +  +I    L   + L++L L++N ++    
Sbjct: 38  GSSGSL-NSIPSGL--TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEE 93

Query: 117 QQLGELTTLEVFDVSDNLLTGPIPRG 142
                L +LE  D+S N L+  +   
Sbjct: 94  DSFSSLGSLEHLDLSYNYLSN-LSSS 118

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 17/109 (15%), Positives = 34/109 (31%), Gaps = 7/109 (6%)

Query: 7   NNLTYLQD---PLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSF 63
                L +    +   V    L       +  +  + G      K       + +++ S 
Sbjct: 208 KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF-RNVKITDESL 266

Query: 64  VGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLSNNKL 111
             ++   +  + GL  L  S N L+  +P      L  L+ + L  N  
Sbjct: 267 F-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 6/98 (6%)

Query: 49  LSNLITAIILSNNSFVGEIPTSI-ANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDL 106
           L N+ + I +S +  + ++ +    NL  +  + +       +I P  L  L +L+ L +
Sbjct: 54  LPNI-SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112

Query: 107 SNNKLSGQIPQQ--LGELTTLEVFDVSDNLLTGPIPRG 142
            N  L    P    +       + +++DN     IP  
Sbjct: 113 FNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.2 bits (115), Expect = 7e-07
 Identities = 38/147 (25%), Positives = 57/147 (38%), Gaps = 24/147 (16%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELE-YEKLSNLITAIILSN 60
            ++ N L       L    Y  LT        L L   + T+L+    L  L   + LS+
Sbjct: 37  HLSENLLYTFSLATLM--PYTRLTQ-------LNLDRAELTKLQVDGTLPVL-GTLDLSH 86

Query: 61  NSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLSNNKLSGQIP--- 116
           N     +P     L  L  L++S N L   +P   L  L  L+ L L  N+L   +P   
Sbjct: 87  NQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGL 143

Query: 117 -QQLGELTTLEVFDVSDNLLTGPIPRG 142
                +L  L    +++N LT  +P G
Sbjct: 144 LTPTPKLEKL---SLANNNLTE-LPAG 166

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 9/105 (8%)

Query: 34  SLTLS-NKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHI 91
            L L+ NK T+++    L NL   + L  N  V ++ +S+ +LK L++L+L  N +   I
Sbjct: 72  KLFLNGNKLTDIKPLANLKNL-GWLFLDENK-VKDL-SSLKDLKKLKSLSLEHNGIS-DI 127

Query: 92  PPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
              L +L  LESL L NNK++      L  LT L+   + DN ++
Sbjct: 128 NG-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS 169

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 7/107 (6%)

Query: 34  SLTLS-NKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHI 91
           SL L  NK T++    +L+ L   + L +N  + +I   +A L  L+ L LS N +   +
Sbjct: 138 SLYLGNNKITDITVLSRLTKL-DTLSLEDNQ-ISDIV-PLAGLTKLQNLYLSKNHIS-DL 193

Query: 92  PPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGP 138
              L  L  L+ L+L + +   +       L        +D  L  P
Sbjct: 194 RA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 6/85 (7%)

Query: 52  LITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKL 111
           L +  I      + +I  S          NL   S+      T   L  ++ +  +N+ +
Sbjct: 3   LGSETITVPTP-IKQI-FSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDI 58

Query: 112 SGQIPQQLGELTTLEVFDVSDNLLT 136
              + Q +  L  +    ++ N LT
Sbjct: 59  K-SV-QGIQYLPNVTKLFLNGNKLT 81

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.3 bits (115), Expect = 7e-07
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 8/111 (7%)

Query: 38  SNKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSI-ANLKGLRTLNLS-TNSLQGHIPP 93
             K   ++    S    +  I +S N  +  I   + +NL  L  + +   N+L  +I P
Sbjct: 39  LTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINP 97

Query: 94  -TLGNLIVLESLDLSNNKLSGQIPQQL-GELTTLEVFDVSDNLLTGPIPRG 142
               NL  L+ L +SN  +   +P           + D+ DN+    I R 
Sbjct: 98  EAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERN 147

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.4 bits (114), Expect = 8e-07
 Identities = 16/97 (16%), Positives = 41/97 (42%), Gaps = 9/97 (9%)

Query: 44  LEYEKLSNLITAIILSNNSFVGEIPTSIAN---LKGLRTLNLSTNSLQG----HIPPTLG 96
              ++  NL   + + +      +         L  L T+++S   L       +   + 
Sbjct: 246 FSKDRFPNL-KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD 304

Query: 97  NLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDN 133
            +  L+ +++  N LS ++ ++L +   +++ DVSD+
Sbjct: 305 KIKHLKFINMKYNYLSDEMKKELQKSLPMKI-DVSDS 340

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.9 bits (110), Expect = 2e-06
 Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 7/71 (9%)

Query: 73  NLKGLRTLNLSTNSLQGHIPPTLGNLIV---LESLDLSNNKLSG----QIPQQLGELTTL 125
               L+ L +     Q  +        +   LE++D+S   L+      +   + ++  L
Sbjct: 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHL 309

Query: 126 EVFDVSDNLLT 136
           +  ++  N L+
Sbjct: 310 KFINMKYNYLS 320

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.3 bits (113), Expect = 9e-07
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 54  TAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLSNNKLS 112
           T I L  N+     P + +  K LR ++LS N +   + P     L  L SL L  NK++
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 113 GQIPQQLGELTTLEVFDVSDNLLTGPIPRG 142
                    L +L++  ++ N +   +   
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINC-LRVD 122

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 23/137 (16%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELE---YEKLSNLITAIIL 58
            +  N +  +         Y  L         + LS N+ +EL    ++ L +L  +++L
Sbjct: 38  RLEQNTIKVIPPGAF--SPYKKLRR-------IDLSNNQISELAPDAFQGLRSL-NSLVL 87

Query: 59  SNNSFVGEIPTSI-ANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLSNNKLSGQIP 116
             N    E+P S+   L  L+ L L+ N +   +      +L  L  L L +NKL   I 
Sbjct: 88  YGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIA 144

Query: 117 Q----QLGELTTLEVFD 129
           +     L  + T+ +  
Sbjct: 145 KGTFSPLRAIQTMHLAQ 161

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 7/140 (5%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNS 62
           +   N  T       G      L         L  +     L  + +S+L T  +  N+ 
Sbjct: 359 NFTQNVFTDS--VFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSL 415

Query: 63  FVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGEL 122
                  + A  + +  LNLS+N L G +   L     ++ LDL NN++   IP+ +  L
Sbjct: 416 NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK--VKVLDLHNNRIM-SIPKDVTHL 472

Query: 123 TTLEVFDVSDNLLTGPIPRG 142
             L+  +V+ N L   +P G
Sbjct: 473 QALQELNVASNQLKS-VPDG 491

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.2 bits (107), Expect = 8e-06
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 6/89 (6%)

Query: 58  LSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLSNNKLSGQIP 116
           LS NS        I+ L  LR L LS N ++  +          LE LD+S+N+L   I 
Sbjct: 59  LSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQN-IS 116

Query: 117 QQLGELTTLEVFDVSDNLLTGPIPRGKQF 145
                + +L   D+S N     +P  K+F
Sbjct: 117 --CCPMASLRHLDLSFNDFDV-LPVCKEF 142

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 17/122 (13%), Positives = 34/122 (27%), Gaps = 1/122 (0%)

Query: 16  LLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAII-LSNNSFVGEIPTSIANL 74
           L        + Y      ++T      E  Y + +     I  + N  F+       +  
Sbjct: 269 LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF 328

Query: 75  KGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNL 134
             +    LS +           +      L+ + N  +  + Q    L  L+   +  N 
Sbjct: 329 AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388

Query: 135 LT 136
           L 
Sbjct: 389 LK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.2 bits (99), Expect = 9e-05
 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 13/107 (12%)

Query: 38  SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLG 96
           SN  T   +  L   +  + L NN     IP  + +L+ L+ LN+++N L+  +P     
Sbjct: 437 SNMLTGSVFRCLPPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLK-SVPDGVFD 494

Query: 97  NLIVLESLDLSNNK----------LSGQIPQQLGELTTLEVFDVSDN 133
            L  L+ + L +N           LS  I +  G +         D+
Sbjct: 495 RLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDS 541

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 22/137 (16%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELE---YEKLSNLITAIIL 58
            +N N  T L+       + P L         +  S NK T++E   +E  S +   I+L
Sbjct: 38  RLNNNEFTVLE-ATGIFKKLPQLRK-------INFSNNKITDIEEGAFEGASGV-NEILL 88

Query: 59  SNNSFVGEIPTSI-ANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLSNNKLSGQIP 116
           ++N     +   +   L+ L+TL L +N +   +   +   L  +  L L +N+++  + 
Sbjct: 89  TSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVA 145

Query: 117 ----QQLGELTTLEVFD 129
                 L  L+TL +  
Sbjct: 146 PGAFDTLHSLSTLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 4/91 (4%)

Query: 54  TAIILSNNSFVGEIPTSI-ANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLSNNKL 111
             + L+NN F     T I   L  LR +N S N +   I          +  + L++N+L
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRL 93

Query: 112 SGQIPQQLGELTTLEVFDVSDNLLTGPIPRG 142
                +    L +L+   +  N +T  +   
Sbjct: 94  ENVQHKMFKGLESLKTLMLRSNRITC-VGND 123

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 17/98 (17%)

Query: 42  TELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTN---SLQGHIPPTLGNL 98
           TE E  +L  +I  I         ++  +++ LK  + L LSTN    +       L  +
Sbjct: 23  TEAEKVELHGMIPPI--------EKMDATLSTLKACKHLALSTNNIEKISS-----LSGM 69

Query: 99  IVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
             L  L L  N +  +I        TLE   +S N + 
Sbjct: 70  ENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA 106

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 9/106 (8%)

Query: 35  LTLS-NKGTELE-YEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIP 92
           L LS N   ++     + NL   + L  N    +I    A    L  L +S N +   + 
Sbjct: 53  LALSTNNIEKISSLSGMENL-RILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS 109

Query: 93  PTLGNLIVLESLDLSNNKLS--GQIPQQLGELTTLEVFDVSDNLLT 136
             +  L+ L  L +SNNK++  G+I  +L  L  LE   ++ N L 
Sbjct: 110 G-IEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPLY 153

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 4/92 (4%)

Query: 45  EYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESL 104
           +Y         + L     +  I    A L     ++ S N ++         L  L++L
Sbjct: 14  QYTNAVRD-RELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTL 69

Query: 105 DLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
            ++NN++          L  L    +++N L 
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 17/98 (17%)

Query: 47  EKLSNL------ITAIILSNNSFVGEIPTSIAN---LKGLRTLNLSTNSLQGHIPPTLGN 97
             + NL        AI  S+N         +     L+ L+TL ++ N +          
Sbjct: 32  PVIENLGATLDQFDAIDFSDNEI-----RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQA 86

Query: 98  LIVLESLDLSNNKLS--GQIPQQLGELTTLEVFDVSDN 133
           L  L  L L+NN L   G +   L  L +L    +  N
Sbjct: 87  LPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRN 123

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 17/140 (12%)

Query: 3   DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLS-NKGTELE---YEKLSNLITAIIL 58
           D++ N L +L         +P L         L LS  +   +E   Y+ LS+L + +IL
Sbjct: 34  DLSFNPLRHLGSYSFF--SFPELQV-------LDLSRCEIQTIEDGAYQSLSHL-STLIL 83

Query: 59  SNNSFVGEIPTSI-ANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKL-SGQIP 116
           + N  +  +     + L  L+ L     +L       +G+L  L+ L++++N + S ++P
Sbjct: 84  TGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 117 QQLGELTTLEVFDVSDNLLT 136
           +    LT LE  D+S N + 
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQ 162

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 16/75 (21%)

Query: 67  IPTSIANLKGLRTLNLSTNSLQGHIPPT-LGNLIVLESLDLSNNKLSGQIP----QQLGE 121
           +P S       + L+LS N L+ H+      +   L+ LDLS  ++   I     Q L  
Sbjct: 26  LPFS------TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77

Query: 122 LTTLEVFDVSDNLLT 136
           L+TL    ++ N + 
Sbjct: 78  LSTL---ILTGNPIQ 89

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 10/105 (9%)

Query: 34  SLTLS-NKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHI 91
              L     T+L   ++LS +       N++   +    +     L+ L+LS N +   +
Sbjct: 23  KQNLGKQSVTDLVSQKELSGV-QNFNGDNSNI--QSLAGMQFFTNLKELHLSHNQIS-DL 78

Query: 92  PPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
            P L +L  LE L ++ N+L   +         L    + +N L 
Sbjct: 79  SP-LKDLTKLEELSVNRNRLK-NLNG--IPSACLSRLFLDNNELR 119

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 11/80 (13%), Positives = 28/80 (35%), Gaps = 6/80 (7%)

Query: 57  ILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIP 116
           I      + ++      L      NL   S+   +      L  +++ +  N+ +   + 
Sbjct: 3   IQRPTP-INQV-FPDPGLANAVKQNLGKQSVT-DLVS-QKELSGVQNFNGDNSNIQ-SL- 56

Query: 117 QQLGELTTLEVFDVSDNLLT 136
             +   T L+   +S N ++
Sbjct: 57  AGMQFFTNLKELHLSHNQIS 76

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 5/93 (5%)

Query: 47  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDL 106
             L NL   + + NN  +  I   +  L  L  L+L  N +  +    L  L  +  +DL
Sbjct: 125 IHLKNL-EILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEIT-NTGG-LTRLKKVNWIDL 179

Query: 107 SNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPI 139
           +  K   +  +   EL         D     P 
Sbjct: 180 TGQKCVNEPVKYQPELYITNTVKDPDGRWISPY 212

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.8 bits (98), Expect = 9e-05
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 8/90 (8%)

Query: 47  EKLSNLITAIILSNNSFVGEIPTSI-ANLKGLRTLNLSTNSLQGHIPP----TLGNLIVL 101
             L  L   ++L NN  +  +  +   ++  L+ L LS N +    P         L  L
Sbjct: 109 SDLQAL-EVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKL 165

Query: 102 ESLDLSNNKLSGQIPQQLGELTTLEVFDVS 131
             LDLS+NKL       L +L       + 
Sbjct: 166 MLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.1 bits (97), Expect = 9e-05
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 58  LSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLSNNKLSGQIP 116
           L  N F   +P  ++N K L  ++LS N +   +   +  N+  L +L LS N+L    P
Sbjct: 38  LDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPP 95

Query: 117 QQLGELTTLEVFDVSDNLLTGPIPRG 142
           +    L +L +  +  N ++  +P G
Sbjct: 96  RTFDGLKSLRLLSLHGNDISV-VPEG 120

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 9/89 (10%)

Query: 58  LSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLSNNKLS---G 113
           L +         +   L  L  LNL  N LQ  +      +L  L +L L+NN+L+    
Sbjct: 42  LQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASLPL 100

Query: 114 QIPQQLGELTTLEVFDVSDNLLTGPIPRG 142
            +   L +L  L    +  N L   +P G
Sbjct: 101 GVFDHLTQLDKL---YLGGNQLKS-LPSG 125

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 18/102 (17%)

Query: 53  ITAIILSNNSF----VGEIPTSIANLKGLRTLNLSTNSLQ----------GHIPPTLGNL 98
           +  I+LS N+        +  +IA+ K L     S                 +   L   
Sbjct: 34  VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 93

Query: 99  IVLESLDLSNNKLSGQIPQQLGEL----TTLEVFDVSDNLLT 136
             L ++ LS+N       + L +     T LE   + +N L 
Sbjct: 94  PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 22/106 (20%)

Query: 53  ITAIILSNNSF-------------VGEIPTSIANLKGLRTLNLSTNSLQG----HIPPTL 95
           +  + L NN                  +     N   LR++    N L+         T 
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183

Query: 96  GNLIVLESLDLSNNKLSGQ-----IPQQLGELTTLEVFDVSDNLLT 136
            +  +L ++ +  N +  +     + + L     L+V D+ DN  T
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	242
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.89
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.86
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.86
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.84
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.83
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.83
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.83
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.83
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.81
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.81
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.81
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.8
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.8
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.78
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.78
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.77
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.77
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.77
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.77
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.76
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.76
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.75
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.74
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.74
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.73
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.73
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.73
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.72
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.72
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.71
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.71
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.71
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.71
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.71
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.7
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.7
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.7
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.7
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.7
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.7
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.69
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.69
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.69
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.69
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.68
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.68
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.68
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.67
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.67
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.67
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.67
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.67
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.66
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.66
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.66
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.66
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.65
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.65
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.65
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.65
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.64
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.64
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.64
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.64
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.62
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.61
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.61
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.61
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.6
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.6
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.6
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.6
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.59
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.59
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.59
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.59
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.58
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.58
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.57
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.57
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.57
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.57
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.57
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.56
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.53
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.53
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.52
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.51
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.51
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.5
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.5
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.49
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.47
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.46
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.46
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.45
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.45
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.45
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.42
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.4
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.39
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.38
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.34
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.33
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.33
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.33
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.32
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.32
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.31
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.3
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.27
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.25
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.24
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.13
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.02
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.01
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.91
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.61
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.58
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.52
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.49
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.44
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.42
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.4
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.18
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.83
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.79
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.69
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.67
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.45
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.45
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.43
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.42
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.4
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.4
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.35
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.27
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.05
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.34
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	90.09
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	86.55
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	84.71

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.89  E-value=6.2e-24  Score=198.50  Aligned_cols=124  Identities=44%  Similarity=0.713  Sum_probs=116.4

Q ss_pred             hcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEe
Q 026180           50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD  129 (242)
Q Consensus        50 ~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~  129 (242)
                      ++.|+.|+|++|+++|.+|..++.++.|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..+..++.|+.|+
T Consensus       631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~  710 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID  710 (768)
T ss_dssp             SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred             cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccccCCCCCCCCCCcCCccccCCCCCCCCCCCCCCCCCCCC
Q 026180          130 VSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLSKQCDNSATS  174 (242)
Q Consensus       130 l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~~~~~c~~~~~~  174 (242)
                      +++|+++|.+|...++.++....+.|||.+||.|.. .|....+.
T Consensus       711 ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~~  754 (768)
T 3rgz_A          711 LSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNAD  754 (768)
T ss_dssp             CCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC--
T ss_pred             CcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCccC
Confidence            999999999999999999999999999999999887 78765543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.86  E-value=1.1e-21  Score=156.88  Aligned_cols=154  Identities=18%  Similarity=0.205  Sum_probs=135.0

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecC-CchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNK-GTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL   80 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L   80 (242)
                      +|+++|.++.+|....     ..+++|++++|.|..... ..+    ..+++|+.|+|++|.|++..+..|..+++|++|
T Consensus        16 l~~s~n~l~~iP~~~~-----~~~~~L~L~~N~l~~~~~~~~~----~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L   86 (220)
T 2v70_A           16 VDCSNQKLNKIPEHIP-----QYTAELRLNNNEFTVLEATGIF----KKLPQLRKINFSNNKITDIEEGAFEGASGVNEI   86 (220)
T ss_dssp             EECCSSCCSSCCSCCC-----TTCSEEECCSSCCCEECCCCCG----GGCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             eEeCCCCcccCccCCC-----CCCCEEEcCCCcCCccCchhhh----ccCCCCCEEECCCCcCCEECHHHhCCCCCCCEE
Confidence            6899999999998543     367899999999987743 333    348899999999999998888899999999999


Q ss_pred             eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCCCC
Q 026180           81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNPGL  159 (242)
Q Consensus        81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~~~  159 (242)
                      +|++|++++..+..|..+++|+.|++++|++++..|..|..+++|+.|++++|.+++..|... .+..+..+.+.+|++.
T Consensus        87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             ECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             ECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            999999998888889999999999999999998889999999999999999999998877654 4667788899999999


Q ss_pred             CCCCC
Q 026180          160 CGQPL  164 (242)
Q Consensus       160 c~~~~  164 (242)
                      |+|+.
T Consensus       167 c~c~l  171 (220)
T 2v70_A          167 CNCYL  171 (220)
T ss_dssp             CSGGG
T ss_pred             CCCch
Confidence            98864

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.86  E-value=1.3e-21  Score=156.54  Aligned_cols=154  Identities=21%  Similarity=0.229  Sum_probs=135.4

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +|+++|+++.+|....     ++++.|++++|.|..+....+..    +++|+.|+|++|.|++..|..|..+++|++|+
T Consensus        16 v~c~~~~l~~iP~~l~-----~~l~~L~l~~n~i~~i~~~~~~~----l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~   86 (220)
T 2v9t_B           16 VDCRGKGLTEIPTNLP-----ETITEIRLEQNTIKVIPPGAFSP----YKKLRRIDLSNNQISELAPDAFQGLRSLNSLV   86 (220)
T ss_dssp             EECTTSCCSSCCSSCC-----TTCCEEECCSSCCCEECTTSSTT----CTTCCEEECCSSCCCEECTTTTTTCSSCCEEE
T ss_pred             EEcCCCCcCcCCCccC-----cCCCEEECCCCcCCCcCHhHhhC----CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEE
Confidence            6889999999998653     58999999999999877655543    88999999999999988899999999999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCCCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNPGLC  160 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~~~c  160 (242)
                      |++|+++...+..|..+++|+.|++++|++++..|..|..+++|+.|++++|.+++..+... .+..+..+.+.+||+.|
T Consensus        87 Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           87 LYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            99999996666678999999999999999999889999999999999999999997666533 45677888999999999


Q ss_pred             CCCC
Q 026180          161 GQPL  164 (242)
Q Consensus       161 ~~~~  164 (242)
                      +|..
T Consensus       167 ~c~l  170 (220)
T 2v9t_B          167 DCHL  170 (220)
T ss_dssp             SGGG
T ss_pred             CCcc
Confidence            8864

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=3.7e-21  Score=156.66  Aligned_cols=154  Identities=21%  Similarity=0.248  Sum_probs=133.1

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      ++|++|+|+.++...|.  .+++|++|++++|.|.......+    ..+++|+.|+|++|.+++..+..|..+++|++|+
T Consensus        40 L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  113 (251)
T 3m19_A           40 LDLQSTGLATLSDATFR--GLTKLTWLNLDYNQLQTLSAGVF----DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY  113 (251)
T ss_dssp             EECTTSCCCCCCTTTTT--TCTTCCEEECTTSCCCCCCTTTT----TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             EEccCCCcCccCHhHhc--CcccCCEEECCCCcCCccCHhHh----ccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence            68899999999988888  89999999999998886654443    3478999999999999988888889999999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCCCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNPGLC  160 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~~~c  160 (242)
                      +++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|.+++..+... .+..+..+.+.+|++.|
T Consensus       114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            99999997777778999999999999999997777789999999999999999996665433 45677888899999998


Q ss_pred             C
Q 026180          161 G  161 (242)
Q Consensus       161 ~  161 (242)
                      .
T Consensus       194 ~  194 (251)
T 3m19_A          194 S  194 (251)
T ss_dssp             T
T ss_pred             C
Confidence            7

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.86  E-value=3.7e-21  Score=158.29  Aligned_cols=156  Identities=21%  Similarity=0.183  Sum_probs=103.5

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      ++|++|+|+.++...|.  .+++|++|++++|.+.......+    ..+++|+.|++++|.+++..+..|..+++|++|+
T Consensus        66 L~l~~n~l~~i~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  139 (270)
T 2o6q_A           66 LYLNDNKLQTLPAGIFK--ELKNLETLWVTDNKLQALPIGVF----DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS  139 (270)
T ss_dssp             EECCSSCCSCCCTTTTS--SCTTCCEEECCSSCCCCCCTTTT----TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             EECCCCccCeeChhhhc--CCCCCCEEECCCCcCCcCCHhHc----ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE
Confidence            45555555555555555  55566666666655554333222    2356677777777777766666677777777777


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCCCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNPGLC  160 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~~~c  160 (242)
                      +++|.+++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|.+++..+... .+..+..+.+.+||+.|
T Consensus       140 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            77777775555557777778888888887776666667777888888888888775443322 34566677788888888


Q ss_pred             CCC
Q 026180          161 GQP  163 (242)
Q Consensus       161 ~~~  163 (242)
                      +|.
T Consensus       220 ~c~  222 (270)
T 2o6q_A          220 TCN  222 (270)
T ss_dssp             SSS
T ss_pred             CCc
Confidence            875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.84  E-value=5.3e-21  Score=160.76  Aligned_cols=157  Identities=30%  Similarity=0.440  Sum_probs=124.8

Q ss_pred             cccCCCCCc-ccCCCCCCCCCCC-CCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCE
Q 026180            2 KDVNANNLT-YLQDPLLGPVRYP-ALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRT   79 (242)
Q Consensus         2 ~dLs~N~i~-~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~   79 (242)
                      ++|++|+|+ .+|.. +.  .++ +|++|++++|.+.......+    ..+. |+.|++++|.+++..|..|..+++|+.
T Consensus       154 L~L~~N~l~~~~p~~-l~--~l~~~L~~L~L~~N~l~~~~~~~~----~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~  225 (313)
T 1ogq_A          154 ITFDGNRISGAIPDS-YG--SFSKLFTSMTISRNRLTGKIPPTF----ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQK  225 (313)
T ss_dssp             EECCSSCCEEECCGG-GG--CCCTTCCEEECCSSEEEEECCGGG----GGCC-CSEEECCSSEEEECCGGGCCTTSCCSE
T ss_pred             EECcCCcccCcCCHH-Hh--hhhhcCcEEECcCCeeeccCChHH----hCCc-ccEEECcCCcccCcCCHHHhcCCCCCE
Confidence            456666666 44433 33  344 66777777776664332222    2234 888888888888888888899999999


Q ss_pred             EeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCCCC
Q 026180           80 LNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGL  159 (242)
Q Consensus        80 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~  159 (242)
                      |++++|.+++..|. +..+++|+.|++++|++++.+|..+..+++|+.|++++|+++|.+|....+..+..+.+.+|+++
T Consensus       226 L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l  304 (313)
T 1ogq_A          226 IHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             EECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred             EECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence            99999999866665 78899999999999999999999999999999999999999999999877888899999999999


Q ss_pred             CCCCCCCCC
Q 026180          160 CGQPLSKQC  168 (242)
Q Consensus       160 c~~~~~~~c  168 (242)
                      |+.|.. .|
T Consensus       305 c~~p~~-~C  312 (313)
T 1ogq_A          305 CGSPLP-AC  312 (313)
T ss_dssp             ESTTSS-CC
T ss_pred             cCCCCC-CC
Confidence            998765 36

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.83  E-value=3.8e-21  Score=181.36  Aligned_cols=158  Identities=25%  Similarity=0.286  Sum_probs=98.0

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecC------------Cc------------------------hhh
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNK------------GT------------------------ELE   45 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~------------~~------------------------~~~   45 (242)
                      +||++|+|..++...|.  .+++|++|++++|.+..+..            ..                        ...
T Consensus       343 L~L~~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~  420 (844)
T 3j0a_A          343 IDLQKNHIAIIQDQTFK--FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILY  420 (844)
T ss_dssp             EECCSCCCCCCCSSCSC--SCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHH
T ss_pred             EECCCCCCCccChhhhc--CCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhh
Confidence            56777777777777776  67777777777766543211            00                        000


Q ss_pred             HHHhhcCccEEEccCCCCccCc------------------------------chhccCCCCCCEEeccCCCCCCCCCccc
Q 026180           46 YEKLSNLITAIILSNNSFVGEI------------------------------PTSIANLKGLRTLNLSTNSLQGHIPPTL   95 (242)
Q Consensus        46 ~~~~~~~L~~L~Ls~n~i~~~~------------------------------p~~~~~l~~L~~L~L~~n~l~~~~p~~~   95 (242)
                      ....+++|+.|+|++|.+++..                              +..|..+++|+.|+|++|++++..|..|
T Consensus       421 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  500 (844)
T 3j0a_A          421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF  500 (844)
T ss_dssp             HHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSS
T ss_pred             hhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHc
Confidence            1123556666666666665322                              2334455666666666666665566666


Q ss_pred             CCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCCCCCCCCCC
Q 026180           96 GNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLS  165 (242)
Q Consensus        96 ~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~~~  165 (242)
                      ..+++|+.|+|++|++++..|..+.  ++|+.|++++|++++..|..  +..+..+.+.+||+.|+|+..
T Consensus       501 ~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~~  566 (844)
T 3j0a_A          501 SHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECELS  566 (844)
T ss_dssp             SSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSCC
T ss_pred             cchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccccH
Confidence            6666777777777777655554444  56777777777777666653  346677889999999998753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.83  E-value=3.5e-20  Score=149.02  Aligned_cols=152  Identities=18%  Similarity=0.193  Sum_probs=129.6

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +|.++++++.+|....     ++|++|++++|.|.......+    ..+++|+.|+|++|.|+...+..|..+++|++|+
T Consensus        24 v~c~~~~l~~ip~~~~-----~~L~~L~Ls~n~i~~~~~~~~----~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~   94 (229)
T 3e6j_A           24 VDCRSKRHASVPAGIP-----TNAQILYLHDNQITKLEPGVF----DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD   94 (229)
T ss_dssp             EECTTSCCSSCCSCCC-----TTCSEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             eEccCCCcCccCCCCC-----CCCCEEEcCCCccCccCHHHh----hCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence            6789999999998653     689999999999987654443    3478999999999999977777789999999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCCCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNPGLC  160 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~~~c  160 (242)
                      |++|++++..+..|..+++|+.|++++|+++ .+|..+..+++|+.|++++|.+++..+... .+..+..+.+.+||+.|
T Consensus        95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            9999999777777899999999999999999 778889999999999999999996554332 45677888899999999


Q ss_pred             CCC
Q 026180          161 GQP  163 (242)
Q Consensus       161 ~~~  163 (242)
                      +|+
T Consensus       174 ~c~  176 (229)
T 3e6j_A          174 ECR  176 (229)
T ss_dssp             TBG
T ss_pred             Ccc
Confidence            885

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.83  E-value=2.1e-20  Score=155.62  Aligned_cols=160  Identities=24%  Similarity=0.226  Sum_probs=104.8

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCc-----------------hhhHHHhhcCccEEEccCCCCc
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGT-----------------ELEYEKLSNLITAIILSNNSFV   64 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-----------------~~~~~~~~~~L~~L~Ls~n~i~   64 (242)
                      ++|++|+|+.++...|.  .+++|++|++++|.|.......                 .+.....+++|+.|+|++|+++
T Consensus        36 L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~  113 (290)
T 1p9a_G           36 LHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT  113 (290)
T ss_dssp             EECTTSCCSEEEGGGGT--TCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCC
T ss_pred             EEcCCCcCCccCHHHhh--cCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCc
Confidence            45666666666555555  5555555555555544433210                 0011123566777777777777


Q ss_pred             cCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-
Q 026180           65 GEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-  143 (242)
Q Consensus        65 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-  143 (242)
                      +..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|+++ .+|... 
T Consensus       114 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~  192 (290)
T 1p9a_G          114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF  192 (290)
T ss_dssp             CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred             ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhc
Confidence            666667777777777777777777666666777777888888888877555556677778888888888877 444433 


Q ss_pred             CCCCcCCccccCCCCCCCCCC
Q 026180          144 QFNTFGKGSFDGNPGLCGQPL  164 (242)
Q Consensus       144 ~~~~~~~~~~~~n~~~c~~~~  164 (242)
                      ....+..+.+.+||+.|+|..
T Consensus       193 ~~~~L~~l~L~~Np~~C~c~~  213 (290)
T 1p9a_G          193 GSHLLPFAFLHGNPWLCNCEI  213 (290)
T ss_dssp             TTCCCSEEECCSCCBCCSGGG
T ss_pred             ccccCCeEEeCCCCccCcCcc
Confidence            344566778899999998853

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.83  E-value=3.1e-20  Score=153.00  Aligned_cols=154  Identities=23%  Similarity=0.227  Sum_probs=119.1

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +||++|+|+.++  .+.  .+++|++|++++|.+.......+    ..+++|+.|++++|.+++..+..|..+++|++|+
T Consensus        68 L~l~~n~l~~~~--~l~--~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  139 (272)
T 3rfs_A           68 LALGGNKLHDIS--ALK--ELTNLTYLILTGNQLQSLPNGVF----DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN  139 (272)
T ss_dssp             EECTTSCCCCCG--GGT--TCTTCCEEECTTSCCCCCCTTTT----TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             EECCCCCCCCch--hhc--CCCCCCEEECCCCccCccChhHh----cCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence            677888887765  344  77788888888887765443333    3377888888888888877777788888888888


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC-CCCCCcCCccccCCCCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG-KQFNTFGKGSFDGNPGLC  160 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~~c  160 (242)
                      +++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+++..|.. ..+..+..+.+.+|++.|
T Consensus       140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  219 (272)
T 3rfs_A          140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  219 (272)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence            8888888776667788888888888888888777777788888888888888888766653 346677778888998888


Q ss_pred             CCC
Q 026180          161 GQP  163 (242)
Q Consensus       161 ~~~  163 (242)
                      .|+
T Consensus       220 ~~~  222 (272)
T 3rfs_A          220 TCP  222 (272)
T ss_dssp             CTT
T ss_pred             cCc
Confidence            775

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=4.4e-20  Score=147.61  Aligned_cols=133  Identities=20%  Similarity=0.252  Sum_probs=121.9

Q ss_pred             cccCCCCCcccC-CCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180            2 KDVNANNLTYLQ-DPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL   80 (242)
Q Consensus         2 ~dLs~N~i~~l~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L   80 (242)
                      ++|++|+|+.++ ...|.  .+++|++|++++|.|+.+....+.    .+++|+.|+|++|.+++..+..|..+++|++|
T Consensus        37 L~L~~N~l~~~~~~~~~~--~l~~L~~L~L~~N~i~~i~~~~~~----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  110 (220)
T 2v70_A           37 LRLNNNEFTVLEATGIFK--KLPQLRKINFSNNKITDIEEGAFE----GASGVNEILLTSNRLENVQHKMFKGLESLKTL  110 (220)
T ss_dssp             EECCSSCCCEECCCCCGG--GCTTCCEEECCSSCCCEECTTTTT----TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred             EEcCCCcCCccCchhhhc--cCCCCCEEECCCCcCCEECHHHhC----CCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence            789999999995 46677  899999999999999987765554    38999999999999998888889999999999


Q ss_pred             eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCC
Q 026180           81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP  140 (242)
Q Consensus        81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  140 (242)
                      +|++|++++..|..|..+++|+.|++++|++++..|..|..+++|+.|++++|++.+.++
T Consensus       111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            999999998889999999999999999999998889999999999999999999998765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.82  E-value=6.8e-20  Score=143.47  Aligned_cols=132  Identities=16%  Similarity=0.168  Sum_probs=117.5

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +|+++|+|+++|...+.     ++++|++++|.|.......   .+..+++|+.|+|++|.|++..|..|..+++|++|+
T Consensus        13 l~~s~~~l~~ip~~~~~-----~l~~L~l~~n~i~~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   84 (192)
T 1w8a_A           13 VDCTGRGLKEIPRDIPL-----HTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             EECTTSCCSSCCSCCCT-----TCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             EEcCCCCcCcCccCCCC-----CCCEEECCCCcCCccCCcc---ccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence            68999999999986532     8999999999987665421   123488999999999999988899999999999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPR  141 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  141 (242)
                      |++|++++..+..|..+++|+.|++++|++++..|..+..+++|+.|++++|++++.++-
T Consensus        85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A           85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            999999988888899999999999999999999999999999999999999999987763

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.81  E-value=1.1e-19  Score=145.33  Aligned_cols=133  Identities=15%  Similarity=0.151  Sum_probs=121.1

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      ++|++|+|+.++...|.  .+++|++|++++|.|..+....+.    .+++|+.|+|++|.|+...+..|..+++|++|+
T Consensus        37 L~l~~n~i~~i~~~~~~--~l~~L~~L~Ls~N~i~~~~~~~~~----~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           37 IRLEQNTIKVIPPGAFS--PYKKLRRIDLSNNQISELAPDAFQ----GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             EECCSSCCCEECTTSST--TCTTCCEEECCSSCCCEECTTTTT----TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             EECCCCcCCCcCHhHhh--CCCCCCEEECCCCcCCCcCHHHhh----CCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence            68999999999999998  899999999999999877655544    389999999999999977777789999999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP  140 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  140 (242)
                      |++|++++..|..|..+++|+.|++++|++++..+..|..+++|+.|++++|++.+...
T Consensus       111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B          111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            99999998889999999999999999999998888889999999999999999987544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.81  E-value=3.2e-20  Score=153.62  Aligned_cols=131  Identities=19%  Similarity=0.144  Sum_probs=64.9

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeE-EEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYS-LTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL   80 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L   80 (242)
                      ++|++|+|+.++...|.  .+++|++|++++|. +.......+    ..+++|+.|++++|.+++..|..+..+++|++|
T Consensus        61 L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  134 (285)
T 1ozn_A           61 LWLHSNVLARIDAAAFT--GLALLEQLDLSDNAQLRSVDPATF----HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL  134 (285)
T ss_dssp             EECCSSCCCEECTTTTT--TCTTCCEEECCSCTTCCCCCTTTT----TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             EECCCCccceeCHhhcC--CccCCCEEeCCCCCCccccCHHHh----cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence            45666666666555555  55666666666654 443322222    124455555555555554444445555555555


Q ss_pred             eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccC
Q 026180           81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGP  138 (242)
Q Consensus        81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~  138 (242)
                      ++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++.
T Consensus       135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  192 (285)
T 1ozn_A          135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (285)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             ECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence            5555555533333444445555555555544433333344444444444444444433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.81  E-value=2.3e-20  Score=159.88  Aligned_cols=157  Identities=20%  Similarity=0.158  Sum_probs=121.0

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +||++|+|+.++...|.. .+++|++|++++|.|..+....+.    .+++|+.|+|++|.|+...+..|..+++|++|+
T Consensus        44 L~Ls~N~l~~l~~~~~~~-~l~~L~~L~L~~N~i~~i~~~~~~----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           44 LDLSHNNLSRLRAEWTPT-RLTNLHSLLLSHNHLNFISSEAFV----PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             EECCSSCCCEECTTSSSS-CCTTCCEEECCSSCCCEECTTTTT----TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             EECCCCCCCccChhhhhh-cccccCEEECCCCcCCccChhhcc----CCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            688888888888877641 578899999998888877655443    378899999999999877777888899999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccc---cCCCcccEEecCCCccccCCCCCC-CCCC--cCCccccC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQL---GELTTLEVFDVSDNLLTGPIPRGK-QFNT--FGKGSFDG  155 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~---~~l~~L~~L~l~~N~l~~~~p~~~-~~~~--~~~~~~~~  155 (242)
                      |++|+|++..|..|..+++|+.|+|++|++++..+..|   ..+++|+.|+|++|.+++..+... .+..  +..+.+.+
T Consensus       119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN  198 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred             CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence            99999988888888899999999999999986544444   568899999999999884332211 1121  25578999


Q ss_pred             CCCCCCCC
Q 026180          156 NPGLCGQP  163 (242)
Q Consensus       156 n~~~c~~~  163 (242)
                      ||+.|+|.
T Consensus       199 N~~~C~C~  206 (361)
T 2xot_A          199 NPLECDCK  206 (361)
T ss_dssp             SCEECCHH
T ss_pred             CCccCCcC
Confidence            99999985

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.81  E-value=1e-19  Score=159.63  Aligned_cols=159  Identities=17%  Similarity=0.122  Sum_probs=127.2

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchh---------------------hHHHhhcCccEEEccC
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTEL---------------------EYEKLSNLITAIILSN   60 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~---------------------~~~~~~~~L~~L~Ls~   60 (242)
                      +||++|+|+.++...|.  .+++|++|++++|.|..+....+.                     ..+..+++|+.|+|++
T Consensus       117 L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~  194 (440)
T 3zyj_A          117 LELFDNRLTTIPNGAFV--YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM  194 (440)
T ss_dssp             EECCSSCCSSCCTTTSC--SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred             EECCCCcCCeeCHhHhh--ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence            67888888888888777  788888888888877766543221                     1223467788888888


Q ss_pred             CCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCC
Q 026180           61 NSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP  140 (242)
Q Consensus        61 n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  140 (242)
                      |.++ .+| .+..+++|++|+|++|.+++..|..|..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+
T Consensus       195 n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  272 (440)
T 3zyj_A          195 CNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH  272 (440)
T ss_dssp             SCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred             CcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh
Confidence            8888 455 36788889999999999998888899999999999999999998888889999999999999999996555


Q ss_pred             CCC-CCCCcCCccccCCCCCCCCCC
Q 026180          141 RGK-QFNTFGKGSFDGNPGLCGQPL  164 (242)
Q Consensus       141 ~~~-~~~~~~~~~~~~n~~~c~~~~  164 (242)
                      ... .+..+..+.+.+||+.|+|..
T Consensus       273 ~~~~~l~~L~~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          273 DLFTPLHHLERIHLHHNPWNCNCDI  297 (440)
T ss_dssp             TTTSSCTTCCEEECCSSCEECSSTT
T ss_pred             hHhccccCCCEEEcCCCCccCCCCc
Confidence            432 456778889999999999954

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=5.3e-19  Score=139.77  Aligned_cols=153  Identities=22%  Similarity=0.211  Sum_probs=122.4

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      ++.+++.++.+|...     .++|++|++++|.+.......+    ..+++|+.|++++|.+++..+..|..+++|++|+
T Consensus        12 v~c~~~~l~~~p~~~-----~~~l~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   82 (208)
T 2o6s_A           12 VECYSQGRTSVPTGI-----PAQTTYLDLETNSLKSLPNGVF----DELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN   82 (208)
T ss_dssp             EECCSSCCSSCCSCC-----CTTCSEEECCSSCCCCCCTTTT----TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             EEecCCCccCCCCCC-----CCCCcEEEcCCCccCcCChhhh----cccccCcEEECCCCccCccChhhcCCCCCcCEEE
Confidence            567888888888654     3488999999988875554433    3478899999999999977677788899999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC-CCCCCcCCccccCCCCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG-KQFNTFGKGSFDGNPGLC  160 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~~c  160 (242)
                      +++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+++..+.. ..+..+..+.+.+|++.|
T Consensus        83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A           83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence            9999998666667888999999999999998777777888999999999999998655543 345677788889999888


Q ss_pred             CCC
Q 026180          161 GQP  163 (242)
Q Consensus       161 ~~~  163 (242)
                      .++
T Consensus       163 ~~~  165 (208)
T 2o6s_A          163 TCP  165 (208)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            775

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.80  E-value=7.2e-20  Score=149.00  Aligned_cols=134  Identities=20%  Similarity=0.216  Sum_probs=120.1

Q ss_pred             CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180            1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL   80 (242)
Q Consensus         1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L   80 (242)
                      +++|++|+|+.++...|.  .+++|++|++++|.+.......+    ..+++|+.|+|++|.|++..+..|..+++|++|
T Consensus        63 ~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  136 (251)
T 3m19_A           63 WLNLDYNQLQTLSAGVFD--DLTELGTLGLANNQLASLPLGVF----DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL  136 (251)
T ss_dssp             EEECTTSCCCCCCTTTTT--TCTTCCEEECTTSCCCCCCTTTT----TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             EEECCCCcCCccCHhHhc--cCCcCCEEECCCCcccccChhHh----cccCCCCEEEcCCCcCCCcChhHhccCCcccEE
Confidence            378999999999999988  89999999999999986654443    348899999999999997777788999999999


Q ss_pred             eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCC
Q 026180           81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP  140 (242)
Q Consensus        81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  140 (242)
                      ++++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++.+...
T Consensus       137 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  196 (251)
T 3m19_A          137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC  196 (251)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred             ECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence            999999997777789999999999999999998888889999999999999999997644

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.80  E-value=1.2e-19  Score=151.47  Aligned_cols=156  Identities=21%  Similarity=0.253  Sum_probs=88.9

Q ss_pred             cccCCCCCcccCC-CCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCcc-CcchhccCCCCCCE
Q 026180            2 KDVNANNLTYLQD-PLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVG-EIPTSIANLKGLRT   79 (242)
Q Consensus         2 ~dLs~N~i~~l~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-~~p~~~~~l~~L~~   79 (242)
                      ++|++|+|+.++. ..|.  .+++|++|++++|.+.......+    ..+++|+.|++++|.+++ ..|..+..+++|++
T Consensus       106 L~l~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  179 (306)
T 2z66_A          106 LDFQHSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAFNGIF----NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF  179 (306)
T ss_dssp             EECTTSEEESSTTTTTTT--TCTTCCEEECTTSCCEECSTTTT----TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             EECCCCcccccccchhhh--hccCCCEEECCCCcCCccchhhc----ccCcCCCEEECCCCccccccchhHHhhCcCCCE
Confidence            3445555555444 3343  45555555555555443332222    225566666666666654 35556666666666


Q ss_pred             EeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCC-C-CCcCCccccCCC
Q 026180           80 LNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQ-F-NTFGKGSFDGNP  157 (242)
Q Consensus        80 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~-~-~~~~~~~~~~n~  157 (242)
                      |++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+++..|.... + ..+..+.+.+|+
T Consensus       180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             EECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            66666666655566666666666666666666655555566666666666666666665554332 2 245556666666


Q ss_pred             CCCCCC
Q 026180          158 GLCGQP  163 (242)
Q Consensus       158 ~~c~~~  163 (242)
                      +.|+|.
T Consensus       260 ~~~~c~  265 (306)
T 2z66_A          260 FACTCE  265 (306)
T ss_dssp             EECSGG
T ss_pred             eecccC
Confidence            666653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.80  E-value=1.7e-19  Score=158.76  Aligned_cols=159  Identities=16%  Similarity=0.093  Sum_probs=128.0

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhh---------------------HHHhhcCccEEEccC
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELE---------------------YEKLSNLITAIILSN   60 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~---------------------~~~~~~~L~~L~Ls~   60 (242)
                      +||++|+|+.++...|.  .+++|++|++++|.|..+....+..                     .+..+++|+.|+|++
T Consensus       128 L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~  205 (452)
T 3zyi_A          128 LELFDNWLTVIPSGAFE--YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM  205 (452)
T ss_dssp             EECCSSCCSBCCTTTSS--SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT
T ss_pred             EECCCCcCCccChhhhc--ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC
Confidence            68888888888888887  7888888888888877665432211                     123467788888888


Q ss_pred             CCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCC
Q 026180           61 NSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP  140 (242)
Q Consensus        61 n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  140 (242)
                      |.+++ +| .+..+++|++|++++|.+++..|..|..+++|+.|++++|++++..|..|..+++|+.|++++|.+++..+
T Consensus       206 n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  283 (452)
T 3zyi_A          206 CNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH  283 (452)
T ss_dssp             SCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             Ccccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh
Confidence            88884 34 46788899999999999998888899999999999999999998888889999999999999999995554


Q ss_pred             CCC-CCCCcCCccccCCCCCCCCCC
Q 026180          141 RGK-QFNTFGKGSFDGNPGLCGQPL  164 (242)
Q Consensus       141 ~~~-~~~~~~~~~~~~n~~~c~~~~  164 (242)
                      ... .+..+..+.+.+||+.|+|..
T Consensus       284 ~~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          284 DLFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             TSSTTCTTCCEEECCSSCEECSTTT
T ss_pred             HHhccccCCCEEEccCCCcCCCCCc
Confidence            432 356778889999999999964

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=5e-19  Score=139.89  Aligned_cols=135  Identities=24%  Similarity=0.228  Sum_probs=119.9

Q ss_pred             CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180            1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL   80 (242)
Q Consensus         1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L   80 (242)
                      +++|++|+|+.++...|.  .+++|++|++++|.+..+....+    ..+++|+.|+|++|.+++..+..|..+++|++|
T Consensus        32 ~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           32 YLDLETNSLKSLPNGVFD--ELTSLTQLYLGGNKLQSLPNGVF----NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL  105 (208)
T ss_dssp             EEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             EEEcCCCccCcCChhhhc--ccccCcEEECCCCccCccChhhc----CCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence            378999999999999888  89999999999999886554433    348899999999999997777778999999999


Q ss_pred             eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCC
Q 026180           81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPR  141 (242)
Q Consensus        81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  141 (242)
                      ++++|++++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+.+|.
T Consensus       106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  166 (208)
T 2o6s_A          106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  166 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTT
T ss_pred             EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCC
Confidence            9999999977777789999999999999999977777789999999999999999987774

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=3e-19  Score=143.61  Aligned_cols=133  Identities=18%  Similarity=0.152  Sum_probs=120.1

Q ss_pred             CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180            1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL   80 (242)
Q Consensus         1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L   80 (242)
                      +++|++|+|+.++...|.  .+++|++|++++|.|..+....+    ..+++|+.|+|++|.|++..+..|..+++|++|
T Consensus        44 ~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~N~l~~i~~~~~----~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L  117 (229)
T 3e6j_A           44 ILYLHDNQITKLEPGVFD--SLINLKELYLGSNQLGALPVGVF----DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL  117 (229)
T ss_dssp             EEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             EEEcCCCccCccCHHHhh--CccCCcEEECCCCCCCCcChhhc----ccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence            378999999999998888  89999999999999976654443    348899999999999998778888999999999


Q ss_pred             eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCC
Q 026180           81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP  140 (242)
Q Consensus        81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  140 (242)
                      ++++|+++ .+|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+.++
T Consensus       118 ~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          118 FMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             ECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             eccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            99999999 888889999999999999999997777789999999999999999998776

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.78  E-value=3.9e-19  Score=146.39  Aligned_cols=131  Identities=21%  Similarity=0.291  Sum_probs=93.6

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +||++|+|+.++...|.  .+++|++|++++|.+.......+.    .+++|+.|+|++|.+++..+..|..+++|++|+
T Consensus        33 L~ls~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           33 LDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQ----SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             EECTTCCCCEECTTTTT--TCTTCSEEECTTCCCCEECTTTTT----TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             EECCCCcccccCHhHhc--cccCCcEEECCCCcCCccCHHHcc----CCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            67788888888877776  777888888888877766544333    367777777777777766667777777777777


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCC-CcccccCCCcccEEecCCCccccC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQ-IPQQLGELTTLEVFDVSDNLLTGP  138 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~  138 (242)
                      +++|.+.+..+..+..+++|+.|++++|.+++. +|..+..+++|+.|++++|.+++.
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence            777777765555677777777777777777653 466677777777777777766643

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.78  E-value=1.9e-18  Score=142.08  Aligned_cols=151  Identities=20%  Similarity=0.199  Sum_probs=112.5

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +||++|+|+.++...|.  .+++|++|++++|.+..+....+    ..+++|+.|+|++|.+++..+..|..+++|++|+
T Consensus        42 L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~i~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  115 (270)
T 2o6q_A           42 LDLQSNKLSSLPSKAFH--RLTKLRLLYLNDNKLQTLPAGIF----KELKNLETLWVTDNKLQALPIGVFDQLVNLAELR  115 (270)
T ss_dssp             EECCSSCCSCCCTTSSS--SCTTCCEEECCSSCCSCCCTTTT----SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred             EECcCCCCCeeCHHHhc--CCCCCCEEECCCCccCeeChhhh----cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence            57788888888877777  77888888888887765544433    2367888888888888866667778888888888


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNPG  158 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~~  158 (242)
                      +++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+... .+..+..+.+.+|..
T Consensus       116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (270)
T 2o6q_A          116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL  193 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC
Confidence            88888887777777888888888888888886666667888888888888888875544322 345566666777643

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.77  E-value=7.1e-19  Score=159.70  Aligned_cols=135  Identities=21%  Similarity=0.273  Sum_probs=121.9

Q ss_pred             CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180            1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL   80 (242)
Q Consensus         1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L   80 (242)
                      ++||++|+|+.|++..|.  .+++|++|++++|.|+.++.+.+..    +++|++|+|++|+|++..+..|.++++|++|
T Consensus        56 ~LdLs~N~i~~l~~~~f~--~l~~L~~L~Ls~N~i~~i~~~~f~~----L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           56 NLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQS----LSHLSTLILTGNPIQSLALGAFSGLSSLQKL  129 (635)
T ss_dssp             EEECTTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTT----CTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred             EEEeeCCCCCCCCHHHHh--CCCCCCEEECCCCcCCCcChhHhcC----CCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence            379999999999999999  9999999999999999887766544    8999999999999997777889999999999


Q ss_pred             eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCC-CcccccCCCcccEEecCCCccccCCCC
Q 026180           81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQ-IPQQLGELTTLEVFDVSDNLLTGPIPR  141 (242)
Q Consensus        81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p~  141 (242)
                      ++++|++++..+..|+.+++|+.|++++|.+++. .|..+..+++|+.|++++|++++..|.
T Consensus       130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  191 (635)
T 4g8a_A          130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  191 (635)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence            9999999977777899999999999999999864 678889999999999999999876654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.77  E-value=1.6e-18  Score=142.66  Aligned_cols=135  Identities=21%  Similarity=0.193  Sum_probs=121.5

Q ss_pred             CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180            1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL   80 (242)
Q Consensus         1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L   80 (242)
                      +++|++|+|+.++...|.  .+++|++|++++|.+.......+    ..+++|+.|++++|.+++..+..|..+++|++|
T Consensus        89 ~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  162 (272)
T 3rfs_A           89 YLILTGNQLQSLPNGVFD--KLTNLKELVLVENQLQSLPDGVF----DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL  162 (272)
T ss_dssp             EEECTTSCCCCCCTTTTT--TCTTCCEEECTTSCCCCCCTTTT----TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             EEECCCCccCccChhHhc--CCcCCCEEECCCCcCCccCHHHh----ccCCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence            378999999999999888  89999999999999886554433    348899999999999998888888999999999


Q ss_pred             eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCC
Q 026180           81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPR  141 (242)
Q Consensus        81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  141 (242)
                      ++++|.+++..+..+..+++|+.|++++|++++..|..+..+++|+.|++++|++.|.+|.
T Consensus       163 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  223 (272)
T 3rfs_A          163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  223 (272)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             ECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence            9999999988777889999999999999999988888899999999999999999988875

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.77  E-value=7.7e-19  Score=159.50  Aligned_cols=157  Identities=20%  Similarity=0.187  Sum_probs=115.6

Q ss_pred             cccCCCCCcccCC-CCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCcc-CcchhccCCCCCCE
Q 026180            2 KDVNANNLTYLQD-PLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVG-EIPTSIANLKGLRT   79 (242)
Q Consensus         2 ~dLs~N~i~~l~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-~~p~~~~~l~~L~~   79 (242)
                      ++|++|++..++. ..|.  .+++|++|++++|.+.......    ...+++|+.|++++|.+++ ..|..+..+++|++
T Consensus       404 L~l~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  477 (606)
T 3vq2_A          404 LDFQHSTLKRVTEFSAFL--SLEKLLYLDISYTNTKIDFDGI----FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF  477 (606)
T ss_dssp             EECTTSEEESTTTTTTTT--TCTTCCEEECTTSCCEECCTTT----TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             eECCCCccCCccChhhhh--ccccCCEEECcCCCCCccchhh----hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCE
Confidence            3445555544443 3344  4555555555555554432222    2336778888888888886 36778888899999


Q ss_pred             EeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCC-CcCCccccCCC
Q 026180           80 LNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFN-TFGKGSFDGNP  157 (242)
Q Consensus        80 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~-~~~~~~~~~n~  157 (242)
                      |++++|++++..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|+++ .+|... .+. .+..+.+.+||
T Consensus       478 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCC
T ss_pred             EECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCC
Confidence            999999998888888899999999999999999888888999999999999999998 566543 232 47778899999


Q ss_pred             CCCCCCCC
Q 026180          158 GLCGQPLS  165 (242)
Q Consensus       158 ~~c~~~~~  165 (242)
                      +.|+|+..
T Consensus       557 ~~c~c~~~  564 (606)
T 3vq2_A          557 VACICEHQ  564 (606)
T ss_dssp             CCCSSTTH
T ss_pred             cccCCccH
Confidence            99999763

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.77  E-value=1.6e-18  Score=135.84  Aligned_cols=128  Identities=25%  Similarity=0.188  Sum_probs=97.4

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +|+++|+|+++|...+     ++|++|++++|.|+.++     ..+..+++|+.|+|++|.|++..+..|..+++|++|+
T Consensus        15 l~~~~~~l~~ip~~~~-----~~l~~L~L~~n~i~~ip-----~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~   84 (193)
T 2wfh_A           15 VRCSNKGLKVLPKGIP-----RDVTELYLDGNQFTLVP-----KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI   84 (193)
T ss_dssp             EECTTSCCSSCCSCCC-----TTCCEEECCSSCCCSCC-----GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             EEcCCCCCCcCCCCCC-----CCCCEEECCCCcCchhH-----HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEE
Confidence            6788899999887543     47888888888776443     1223467788888888888877777788888888888


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPI  139 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~  139 (242)
                      |++|++++..|..|..+++|+.|+|++|+++...+..|..+++|+.|++++|++.+.+
T Consensus        85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A           85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             CCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence            8888888777777888888888888888888665566777888888888888877544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.76  E-value=3.3e-18  Score=142.25  Aligned_cols=124  Identities=27%  Similarity=0.199  Sum_probs=77.8

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +++++|+|+.+|...+     +++++|++++|.|.......+.    .+++|+.|+|++|.+++..+ . ..+++|++|+
T Consensus        15 l~~~~~~l~~ip~~~~-----~~l~~L~L~~N~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~   83 (290)
T 1p9a_G           15 VNCDKRNLTALPPDLP-----KDTTILHLSENLLYTFSLATLM----PYTRLTQLNLDRAELTKLQV-D-GTLPVLGTLD   83 (290)
T ss_dssp             EECTTSCCSSCCSCCC-----TTCCEEECTTSCCSEEEGGGGT----TCTTCCEEECTTSCCCEEEC-C-SCCTTCCEEE
T ss_pred             EECCCCCCCcCCCCCC-----CCCCEEEcCCCcCCccCHHHhh----cCCCCCEEECCCCccCcccC-C-CCCCcCCEEE
Confidence            6899999999998653     5899999999998766543332    36666777777666664322 1 4555555555


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCcccc
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTG  137 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  137 (242)
                      +++|+++ .+|..+..+++|+.|++++|++++..|..|..+++|+.|++++|++++
T Consensus        84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~  138 (290)
T 1p9a_G           84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT  138 (290)
T ss_dssp             CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred             CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc
Confidence            5555555 445555555555555555555554444555555555555555555553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.76  E-value=6.8e-18  Score=139.57  Aligned_cols=150  Identities=19%  Similarity=0.182  Sum_probs=118.5

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCC-CccCcchhccCCCCCCEE
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNS-FVGEIPTSIANLKGLRTL   80 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~p~~~~~l~~L~~L   80 (242)
                      ++|++|+|+.++...|.  .+++|++|++++|.+.......+.    .+++|+.|++++|. ++...|..|..+++|++|
T Consensus        37 L~l~~n~i~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           37 IFLHGNRISHVPAASFR--ACRNLTILWLHSNVLARIDAAAFT----GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             EECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTT----TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             EEeeCCcCCccCHHHcc--cCCCCCEEECCCCccceeCHhhcC----CccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            67888888888888887  788899999988888766544433    37888999999887 776668888888999999


Q ss_pred             eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC-CCCCCcCCccccCCC
Q 026180           81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG-KQFNTFGKGSFDGNP  157 (242)
Q Consensus        81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~  157 (242)
                      ++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+++..+.. ..+..+..+.+.+|.
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  188 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR  188 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence            99999988777888888899999999999988776667888889999999999888554432 235566666777764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.75  E-value=4e-18  Score=154.76  Aligned_cols=156  Identities=21%  Similarity=0.235  Sum_probs=128.5

Q ss_pred             ccCCCCCccc-CCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCC-ccCcchhccCCCCCCEE
Q 026180            3 DVNANNLTYL-QDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSF-VGEIPTSIANLKGLRTL   80 (242)
Q Consensus         3 dLs~N~i~~l-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i-~~~~p~~~~~l~~L~~L   80 (242)
                      ++++|++..+ +...|.  .+.+++.++++.|.+.......+.    .++.++.|+|++|.+ .+..|..|..+++|++|
T Consensus       426 ~l~~~~~~~~~~~~~~~--~l~~l~~l~ls~n~l~~~~~~~~~----~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L  499 (635)
T 4g8a_A          426 DFQHSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAFNGIFN----GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL  499 (635)
T ss_dssp             ECTTSEEESTTSSCTTT--TCTTCCEEECTTSCCEECCTTTTT----TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             hhhhccccccccccccc--cccccccccccccccccccccccc----cchhhhhhhhhhcccccccCchhhhhccccCEE
Confidence            4454544333 334455  677888888888888776655443    478999999999975 44678889999999999


Q ss_pred             eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCC-C-CCcCCccccCCCC
Q 026180           81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQ-F-NTFGKGSFDGNPG  158 (242)
Q Consensus        81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~-~-~~~~~~~~~~n~~  158 (242)
                      +|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|+.|++++|++++..|.... + .++..+.+++||+
T Consensus       500 ~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~  579 (635)
T 4g8a_A          500 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  579 (635)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred             ECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence            9999999999999999999999999999999988889999999999999999999988887643 2 4677889999999


Q ss_pred             CCCCCC
Q 026180          159 LCGQPL  164 (242)
Q Consensus       159 ~c~~~~  164 (242)
                      .|+|..
T Consensus       580 ~C~C~~  585 (635)
T 4g8a_A          580 ACTCEH  585 (635)
T ss_dssp             CCSGGG
T ss_pred             cccCCc
Confidence            999964

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.74  E-value=1.3e-17  Score=146.34  Aligned_cols=140  Identities=22%  Similarity=0.143  Sum_probs=120.5

Q ss_pred             CCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCC
Q 026180           21 RYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIV  100 (242)
Q Consensus        21 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  100 (242)
                      ..++|++|++++|.+.......+    ..+++|+.|+|++|.+++..|..|..+++|++|++++|.+++..|..+..+++
T Consensus       273 ~~~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  348 (455)
T 3v47_A          273 EASGVKTCDLSKSKIFALLKSVF----SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK  348 (455)
T ss_dssp             TTSCCCEEECCSSCCCEECTTTT----TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred             cccCceEEEecCccccccchhhc----ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence            44689999999998886644433    34789999999999999888889999999999999999999888889999999


Q ss_pred             CCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC-CCCCCcCCccccCCCCCCCCCC
Q 026180          101 LESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG-KQFNTFGKGSFDGNPGLCGQPL  164 (242)
Q Consensus       101 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~~c~~~~  164 (242)
                      |+.|++++|++++..|..+..+++|+.|++++|++++..+.. ..+..+..+.+.+|++.|+|+.
T Consensus       349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            999999999999888999999999999999999999655443 3466788889999999999873

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.74  E-value=1.1e-17  Score=128.98  Aligned_cols=130  Identities=22%  Similarity=0.181  Sum_probs=105.5

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +++++|+++.+|...     .++|++|++++|.+.......+    ..+++|+.|++++|.+++..+..|..+++|++|+
T Consensus        12 l~~~~~~l~~~p~~~-----~~~l~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   82 (177)
T 2o6r_A           12 IRCNSKGLTSVPTGI-----PSSATRLELESNKLQSLPHGVF----DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY   82 (177)
T ss_dssp             EECCSSCCSSCCTTC-----CTTCSEEECCSSCCCCCCTTTT----TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             EEecCCCCccCCCCC-----CCCCcEEEeCCCcccEeCHHHh----cCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence            578899999998654     3588999999888875544333    3478899999999999877777788899999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP  140 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  140 (242)
                      +++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+.+|
T Consensus        83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            99999997777778888999999999999986666667888999999999999887665

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.73  E-value=7.3e-18  Score=132.04  Aligned_cols=131  Identities=23%  Similarity=0.319  Sum_probs=112.4

Q ss_pred             cccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEe
Q 026180           26 TYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLD  105 (242)
Q Consensus        26 ~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  105 (242)
                      +.+++++|.+..++...       +..++.|+|++|.|+ .+|..|..+++|++|++++|.|++..+..|..+++|+.|+
T Consensus        13 ~~l~~~~~~l~~ip~~~-------~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~   84 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI-------PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI   84 (193)
T ss_dssp             TEEECTTSCCSSCCSCC-------CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CEEEcCCCCCCcCCCCC-------CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEE
Confidence            46677777776555432       468999999999999 7889999999999999999999988888999999999999


Q ss_pred             CCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCCCCCCCCC
Q 026180          106 LSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNPGLCGQPL  164 (242)
Q Consensus       106 l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~~~c~~~~  164 (242)
                      |++|++++..|..|..+++|+.|++++|.++...+... .+..+..+.+.+||+.|+|..
T Consensus        85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l  144 (193)
T 2wfh_A           85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM  144 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence            99999998888899999999999999999996544332 466788889999999999854

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=6.2e-18  Score=132.25  Aligned_cols=132  Identities=20%  Similarity=0.246  Sum_probs=114.5

Q ss_pred             cccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcch-hccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEE
Q 026180           26 TYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPT-SIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESL  104 (242)
Q Consensus        26 ~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  104 (242)
                      +.+++++|.++.++...       ...++.|++++|.|++..+. .|..+++|++|+|++|++++..|..|..+++|+.|
T Consensus        11 ~~l~~s~~~l~~ip~~~-------~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   83 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDI-------PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL   83 (192)
T ss_dssp             TEEECTTSCCSSCCSCC-------CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CEEEcCCCCcCcCccCC-------CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence            67788888776555433       34899999999999976664 48999999999999999998989999999999999


Q ss_pred             eCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCCCCCCCCC
Q 026180          105 DLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNPGLCGQPL  164 (242)
Q Consensus       105 ~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~~~c~~~~  164 (242)
                      ++++|++++..|..|..+++|+.|++++|++++..|... .+..+..+.+.+|++.|+|+.
T Consensus        84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A           84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            999999998888889999999999999999998888654 456778889999999998864

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.73  E-value=4.9e-18  Score=152.88  Aligned_cols=157  Identities=20%  Similarity=0.208  Sum_probs=131.2

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      ++|++|.+..++.. |.  .+++|++|++++|.+......   ..+..+++|+.|++++|.+++..|..+..+++|++|+
T Consensus       378 L~l~~n~l~~~~~~-~~--~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  451 (570)
T 2z63_A          378 LDLSFNGVITMSSN-FL--GLEQLEHLDFQHSNLKQMSEF---SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK  451 (570)
T ss_dssp             EECCSCSEEEEEEE-EE--TCTTCCEEECTTSEEESCTTS---CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred             EECCCCcccccccc-cc--ccCCCCEEEccCCccccccch---hhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEE
Confidence            56777777777766 55  778888888888887754321   1223478999999999999988999999999999999


Q ss_pred             ccCCCCC-CCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC-CCCCCcCCccccCCCCC
Q 026180           82 LSTNSLQ-GHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG-KQFNTFGKGSFDGNPGL  159 (242)
Q Consensus        82 L~~n~l~-~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~~  159 (242)
                      +++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+++..|.. ..+..+..+.+.+|++.
T Consensus       452 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  531 (570)
T 2z63_A          452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD  531 (570)
T ss_dssp             CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence            9999997 578889999999999999999999888999999999999999999999776654 34667788899999999


Q ss_pred             CCCCC
Q 026180          160 CGQPL  164 (242)
Q Consensus       160 c~~~~  164 (242)
                      |+|+.
T Consensus       532 ~~~~~  536 (570)
T 2z63_A          532 CSCPR  536 (570)
T ss_dssp             CCTTT
T ss_pred             CCCcc
Confidence            98875

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.73  E-value=7.7e-18  Score=138.62  Aligned_cols=149  Identities=21%  Similarity=0.213  Sum_probs=72.8

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +||++|+|+.++...|.  .+++|++|++++|.+.......+.    .+++|+.|++++|.+++..+..+..+++|++|+
T Consensus        57 L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  130 (276)
T 2z62_A           57 LDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFS----GLSSLQKLVAVETNLASLENFPIGHLKTLKELN  130 (276)
T ss_dssp             EECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTT----TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred             EECCCCcCCccCHHHcc--CCcCCCEEECCCCccCccChhhhc----CCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence            45555555555555554  455555555555555444322222    245555555555555544444455555555555


Q ss_pred             ccCCCCCCC-CCcccCCCCCCCEEeCCCCCCCCCCcccccCCCccc----EEecCCCccccCCCCCCCCCCcCCccccCC
Q 026180           82 LSTNSLQGH-IPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLE----VFDVSDNLLTGPIPRGKQFNTFGKGSFDGN  156 (242)
Q Consensus        82 L~~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~----~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n  156 (242)
                      +++|.+++. +|..+..+++|+.|++++|++++..+..+..+.+|+    .+++++|.+++..+.......+..+.+.+|
T Consensus       131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n  210 (276)
T 2z62_A          131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN  210 (276)
T ss_dssp             CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSS
T ss_pred             CcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCC
Confidence            555555532 355555555555555555555544444444333333    455555555543333322223444444444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.73  E-value=2.2e-18  Score=144.70  Aligned_cols=149  Identities=23%  Similarity=0.351  Sum_probs=108.0

Q ss_pred             cccCC-CCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180            2 KDVNA-NNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL   80 (242)
Q Consensus         2 ~dLs~-N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L   80 (242)
                      +||++ |++....+..|.  .+++|++|++++|.+.......    +..+++|+.|+|++|.+++..|..+..+++|++|
T Consensus        81 L~L~~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  154 (313)
T 1ogq_A           81 LYIGGINNLVGPIPPAIA--KLTQLHYLYITHTNVSGAIPDF----LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             EEEEEETTEESCCCGGGG--GCTTCSEEEEEEECCEEECCGG----GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             eeCCCCCcccccCChhHh--cCCCCCEEECcCCeeCCcCCHH----HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence            57774 777754445566  7888888888888887332222    2347788888888888888888888888888888


Q ss_pred             eccCCCCCCCCCcccCCCC-CCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCC
Q 026180           81 NLSTNSLQGHIPPTLGNLI-VLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNP  157 (242)
Q Consensus        81 ~L~~n~l~~~~p~~~~~l~-~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~  157 (242)
                      ++++|++++.+|..+..++ +|+.|++++|++++..|..+..+. |+.|++++|.+++..|... .+..+..+.+.+|.
T Consensus       155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  232 (313)
T 1ogq_A          155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS  232 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred             ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence            8888888888888888877 888888888888877777777766 7777777777776655432 33445555555553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.73  E-value=1.3e-17  Score=146.30  Aligned_cols=135  Identities=19%  Similarity=0.166  Sum_probs=122.8

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +||++|+|..++...|.  .+++|++|++++|.+.......+.    .+++|+.|+|++|.+++..|..|..+++|++|+
T Consensus       280 L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          280 CDLSKSKIFALLKSVFS--HFTDLEQLTLAQNEINKIDDNAFW----GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             EECCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTTT----TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred             EEecCccccccchhhcc--cCCCCCEEECCCCcccccChhHhc----CcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence            68999999999888888  899999999999999876554443    388999999999999988899999999999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG  142 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~  142 (242)
                      +++|++++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++++.+|..
T Consensus       354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  414 (455)
T 3v47_A          354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  414 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence            9999999888999999999999999999999877777899999999999999999999854

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.72  E-value=1.1e-17  Score=143.06  Aligned_cols=148  Identities=18%  Similarity=0.144  Sum_probs=126.1

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +|+++|+++.+|...+     ..++.|++++|.|+......+.   ..+++|+.|+|++|+|++..+..|..+++|++|+
T Consensus        23 l~c~~~~l~~iP~~~~-----~~l~~L~Ls~N~l~~l~~~~~~---~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~   94 (361)
T 2xot_A           23 LSCSKQQLPNVPQSLP-----SYTALLDLSHNNLSRLRAEWTP---TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD   94 (361)
T ss_dssp             EECCSSCCSSCCSSCC-----TTCSEEECCSSCCCEECTTSSS---SCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             EEeCCCCcCccCccCC-----CCCCEEECCCCCCCccChhhhh---hcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence            6899999999998653     3689999999999987765543   1378999999999999988888999999999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-----CCCCcCCccccCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-----QFNTFGKGSFDGN  156 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-----~~~~~~~~~~~~n  156 (242)
                      |++|++++..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|.+++ +|...     .+..+..+++.+|
T Consensus        95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N  173 (361)
T 2xot_A           95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSN  173 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSS
T ss_pred             CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCC
Confidence            99999998878889999999999999999998889999999999999999999995 44332     3556667777777


Q ss_pred             CC
Q 026180          157 PG  158 (242)
Q Consensus       157 ~~  158 (242)
                      ..
T Consensus       174 ~l  175 (361)
T 2xot_A          174 KL  175 (361)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.72  E-value=1.5e-17  Score=152.99  Aligned_cols=140  Identities=19%  Similarity=0.177  Sum_probs=96.4

Q ss_pred             CCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcc--------hhccCCCCCCEEeccCCCCCCCCC
Q 026180           21 RYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIP--------TSIANLKGLRTLNLSTNSLQGHIP   92 (242)
Q Consensus        21 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p--------~~~~~l~~L~~L~L~~n~l~~~~p   92 (242)
                      .+++|++|++++|.|..+....+    ..+++|+.|+|++|.+++..+        ..|..+++|+.|++++|+++...+
T Consensus       478 ~l~~L~~L~Ls~N~l~~i~~~~~----~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~  553 (680)
T 1ziw_A          478 PLRNLTILDLSNNNIANINDDML----EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV  553 (680)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cCCCCCEEECCCCCCCcCChhhh----ccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH
Confidence            45566666666666554433322    236667777777777764322        125667777777777777774444


Q ss_pred             cccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC--CCCCcCCccccCCCCCCCCCC
Q 026180           93 PTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK--QFNTFGKGSFDGNPGLCGQPL  164 (242)
Q Consensus        93 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~--~~~~~~~~~~~~n~~~c~~~~  164 (242)
                      ..|..+++|+.|++++|++++..+..|..+++|+.|++++|.+++..|...  .+..+..+.+.+||+.|+|+.
T Consensus       554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             HHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            467788888888888888886666667788888888888888886555432  356677888999999999975

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.71  E-value=3.4e-17  Score=143.57  Aligned_cols=148  Identities=16%  Similarity=0.167  Sum_probs=111.6

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +||++|+|+.++...|.  .+++|++|++++|.|..+....+    ..+++|+.|+|++|.++...+..|..+++|++|+
T Consensus        69 L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A           69 LNLHENQIQIIKVNSFK--HLRHLEILQLSRNHIRTIEIGAF----NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW  142 (440)
T ss_dssp             EECCSCCCCEECTTTTS--SCSSCCEEECCSSCCCEECGGGG----TTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred             EEccCCcCCeeCHHHhh--CCCCCCEEECCCCcCCccChhhc----cCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence            68999999999988888  89999999999998887664444    3478899999999999977777888999999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCC-CCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNN-KLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGN  156 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N-~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n  156 (242)
                      +++|.++...+..|..+++|+.|++++| .+....+..|..+++|+.|++++|.++ .+|....+..+..+.+.+|
T Consensus       143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N  217 (440)
T 3zyj_A          143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGN  217 (440)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCCCTTCSSCCEEECTTS
T ss_pred             CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccccCCCcccCEEECCCC
Confidence            9999998666667777788888888774 444333445677777777777777776 4454444445555555555

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.71  E-value=1.3e-17  Score=155.70  Aligned_cols=156  Identities=28%  Similarity=0.341  Sum_probs=104.9

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      ++|++|+++...+..|.  .+++|++|++++|.+.....    .....+++|+.|++++|.+++..|..+..+++|++|+
T Consensus       399 L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  472 (768)
T 3rgz_A          399 LYLQNNGFTGKIPPTLS--NCSELVSLHLSFNYLSGTIP----SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI  472 (768)
T ss_dssp             EECCSSEEEEECCGGGG--GCTTCCEEECCSSEEESCCC----GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             EECCCCccccccCHHHh--cCCCCCEEECcCCcccCccc----HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence            34555555543334444  56666666666666653221    1223366777777777777777777777777777777


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCCCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNPGLC  160 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~~~c  160 (242)
                      +++|++++.+|..+..+++|+.|++++|++++.+|..++.+++|+.|++++|.++|.+|... .+..+..+++.+|+..+
T Consensus       473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g  552 (768)
T 3rgz_A          473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG  552 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred             ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence            77777777777777777777777777777777777777777777888888887777777553 34556666777776655


Q ss_pred             CCC
Q 026180          161 GQP  163 (242)
Q Consensus       161 ~~~  163 (242)
                      ..|
T Consensus       553 ~ip  555 (768)
T 3rgz_A          553 TIP  555 (768)
T ss_dssp             BCC
T ss_pred             cCC
Confidence            443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.71  E-value=7e-18  Score=153.16  Aligned_cols=160  Identities=18%  Similarity=0.200  Sum_probs=95.9

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCc-hh--------------------hHHHhhcCccEEEccC
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGT-EL--------------------EYEKLSNLITAIILSN   60 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~--------------------~~~~~~~~L~~L~Ls~   60 (242)
                      ++|++|++..++...|.  .+++|++|++++|.+....... +.                    .....+++|+.|++++
T Consensus       381 L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  458 (606)
T 3t6q_A          381 LNLSYNEPLSLKTEAFK--ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG  458 (606)
T ss_dssp             EECCSCSCEEECTTTTT--TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTT
T ss_pred             EECCCCcCCcCCHHHhc--CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCC
Confidence            56777777777766666  6677777777777666432111 11                    1112244555555555


Q ss_pred             CCCccC---cchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCcccc
Q 026180           61 NSFVGE---IPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTG  137 (242)
Q Consensus        61 n~i~~~---~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  137 (242)
                      |.+++.   .+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..|..+..++.| .|++++|.+++
T Consensus       459 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~  537 (606)
T 3t6q_A          459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI  537 (606)
T ss_dssp             CBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred             CCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccc
Confidence            555431   22345555666666666666665556666666666666666666666666666666666 66666666665


Q ss_pred             CCCCCC-CCCCcCCccccCCCCCCCCCC
Q 026180          138 PIPRGK-QFNTFGKGSFDGNPGLCGQPL  164 (242)
Q Consensus       138 ~~p~~~-~~~~~~~~~~~~n~~~c~~~~  164 (242)
                      ..|... .+..+..+.+.+||+.|+|+.
T Consensus       538 ~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          538 ILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             CCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             cCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            544331 234556677888888887753

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.71  E-value=3.9e-17  Score=143.63  Aligned_cols=149  Identities=17%  Similarity=0.147  Sum_probs=108.2

Q ss_pred             CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180            1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL   80 (242)
Q Consensus         1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L   80 (242)
                      ++||++|+|+.++...|.  .+++|++|++++|.|..+....+.    .+++|+.|+|++|.+++..+..|..+++|++|
T Consensus        79 ~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  152 (452)
T 3zyi_A           79 YLNLMENNIQMIQADTFR--HLHHLEVLQLGRNSIRQIEVGAFN----GLASLNTLELFDNWLTVIPSGAFEYLSKLREL  152 (452)
T ss_dssp             EEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTT----TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred             EEECcCCcCceECHHHcC--CCCCCCEEECCCCccCCcChhhcc----CcccCCEEECCCCcCCccChhhhcccCCCCEE
Confidence            368899999999888888  889999999999988877655443    37889999999999987777778889999999


Q ss_pred             eccCCCCCCCCCcccCCCCCCCEEeCCC-CCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCC
Q 026180           81 NLSTNSLQGHIPPTLGNLIVLESLDLSN-NKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGN  156 (242)
Q Consensus        81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n  156 (242)
                      ++++|.++...+..|..+++|+.|++++ |.+....+..|..+++|+.|++++|.+++ +|....+..+..+.+.+|
T Consensus       153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N  228 (452)
T 3zyi_A          153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSGN  228 (452)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCCCTTCTTCCEEECTTS
T ss_pred             ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cccccccccccEEECcCC
Confidence            9999998866666677777777777777 34443333356667777777777777663 344333444444444444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.71  E-value=1.6e-17  Score=146.85  Aligned_cols=160  Identities=20%  Similarity=0.182  Sum_probs=117.9

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhH--------------------HHhhcCccEEEccCC
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEY--------------------EKLSNLITAIILSNN   61 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~--------------------~~~~~~L~~L~Ls~n   61 (242)
                      ++|++|+++.++...|.  .+++|+.|++++|.+.......+...                    .....+|+.|+|++|
T Consensus       157 L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n  234 (477)
T 2id5_A          157 LTLEKCNLTSIPTEALS--HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC  234 (477)
T ss_dssp             EEEESCCCSSCCHHHHT--TCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS
T ss_pred             EECCCCcCcccChhHhc--ccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC
Confidence            45555555555554444  45555555555554444332211110                    001237888899999


Q ss_pred             CCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCC
Q 026180           62 SFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPR  141 (242)
Q Consensus        62 ~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  141 (242)
                      .++...+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..|..|..+++|+.|++++|.+++..+.
T Consensus       235 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  314 (477)
T 2id5_A          235 NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES  314 (477)
T ss_dssp             CCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGG
T ss_pred             cccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHh
Confidence            99965557889999999999999999988888899999999999999999988899999999999999999999965443


Q ss_pred             C-CCCCCcCCccccCCCCCCCCC
Q 026180          142 G-KQFNTFGKGSFDGNPGLCGQP  163 (242)
Q Consensus       142 ~-~~~~~~~~~~~~~n~~~c~~~  163 (242)
                      . ..+..+..+.+.+||+.|+|.
T Consensus       315 ~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          315 VFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             GBSCGGGCCEEECCSSCEECSGG
T ss_pred             HcCCCcccCEEEccCCCccCccc
Confidence            3 235667788899999999875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.71  E-value=9.3e-18  Score=135.36  Aligned_cols=147  Identities=14%  Similarity=0.144  Sum_probs=123.1

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeE-EEeecCCchhhHHHhhcCccEEEccC-CCCccCcchhccCCCCCCE
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYS-LTLSNKGTELEYEKLSNLITAIILSN-NSFVGEIPTSIANLKGLRT   79 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~L~~L~Ls~-n~i~~~~p~~~~~l~~L~~   79 (242)
                      ++|++|+|+.++...|.  .+++|++|++++|. ++.+....+..    +++|+.|++++ |.+++..+..|..+++|++
T Consensus        36 L~l~~n~l~~i~~~~~~--~l~~L~~L~l~~n~~l~~i~~~~f~~----l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           36 LKLIETHLRTIPSHAFS--NLPNISRIYVSIDVTLQQLESHSFYN----LSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             EEEESCCCSEECTTTTT--TCTTCCEEEEECCSSCCEECTTTEES----CTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             EEEeCCcceEECHHHcc--CCCCCcEEeCCCCCCcceeCHhHcCC----CcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            68999999999999998  89999999999996 88776655433    78999999998 9999777788999999999


Q ss_pred             EeccCCCCCCCCCcccCCCCCCC---EEeCCCC-CCCCCCcccccCCCccc-EEecCCCccccCCCCCC-CCCCcCCccc
Q 026180           80 LNLSTNSLQGHIPPTLGNLIVLE---SLDLSNN-KLSGQIPQQLGELTTLE-VFDVSDNLLTGPIPRGK-QFNTFGKGSF  153 (242)
Q Consensus        80 L~L~~n~l~~~~p~~~~~l~~L~---~L~l~~N-~l~~~~p~~~~~l~~L~-~L~l~~N~l~~~~p~~~-~~~~~~~~~~  153 (242)
                      |++++|.+++ +|+ +..+++|+   .|++++| .+++..+..|..+++|+ .|++++|.++ .+|... ....+..+.+
T Consensus       110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L  186 (239)
T 2xwt_C          110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYL  186 (239)
T ss_dssp             EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEEC
T ss_pred             EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEc
Confidence            9999999995 666 88888888   9999999 99877777799999999 9999999998 555432 2245666677


Q ss_pred             cCCC
Q 026180          154 DGNP  157 (242)
Q Consensus       154 ~~n~  157 (242)
                      .+|+
T Consensus       187 ~~n~  190 (239)
T 2xwt_C          187 NKNK  190 (239)
T ss_dssp             TTCT
T ss_pred             CCCC
Confidence            7775

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=1.4e-17  Score=130.61  Aligned_cols=143  Identities=15%  Similarity=0.127  Sum_probs=117.8

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +++++|+|++++.  +.  .+++|++|++++|.+....      ....+++|+.|++++|.+++..+..+..+++|++|+
T Consensus        49 L~l~~n~i~~l~~--l~--~l~~L~~L~l~~n~~~~~~------~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           49 ITLANINVTDLTG--IE--YAHNIKDLTINNIHATNYN------PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             EEEESSCCSCCTT--GG--GCTTCSEEEEESCCCSCCG------GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             EeccCCCccChHH--Hh--cCCCCCEEEccCCCCCcch------hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            6889999999883  45  7889999999998554322      234478999999999999987888899999999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCC-CCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNK-LSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNP  157 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~-l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~  157 (242)
                      +++|.+++..|..+..+++|+.|++++|. ++ .+| .+..+++|+.|++++|.+++ ++....+..+..+.+.+|+
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CTTGGGCSSCCEEEECBC-
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hHHhccCCCCCEEEeeCcc
Confidence            99999998788889999999999999998 66 556 68899999999999999985 4444456667777787775

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.70  E-value=1.8e-17  Score=140.06  Aligned_cols=147  Identities=19%  Similarity=0.286  Sum_probs=98.3

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +||++|+|+.+|...+   .+++|++|++++|.+..++...     ..+++|+.|+|++|.++ .+|..+..+++|++|+
T Consensus        86 L~L~~n~l~~lp~~l~---~l~~L~~L~L~~n~l~~lp~~~-----~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           86 LELRSVPLPQFPDQAF---RLSHLQHMTIDAAGLMELPDTM-----QQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             EEEESSCCSSCCSCGG---GGTTCSEEEEESSCCCCCCSCG-----GGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             EEccCCCchhcChhhh---hCCCCCEEECCCCCccchhHHH-----hccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            5778888888876533   4778888888887776433222     33677788888888777 6677777777777777


Q ss_pred             ccCCCCCCCCCcccCC---------CCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCcc
Q 026180           82 LSTNSLQGHIPPTLGN---------LIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGS  152 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~---------l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~  152 (242)
                      +++|++.+.+|..+..         +++|+.|++++|.++ .+|..+..+++|+.|++++|.+++..+....+..+..+.
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~  235 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD  235 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEE
Confidence            7777776677765543         677777777777776 566667777777777777777764333222344555555


Q ss_pred             ccCCCC
Q 026180          153 FDGNPG  158 (242)
Q Consensus       153 ~~~n~~  158 (242)
                      +.+|..
T Consensus       236 Ls~n~~  241 (328)
T 4fcg_A          236 LRGCTA  241 (328)
T ss_dssp             CTTCTT
T ss_pred             CcCCcc
Confidence            665543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.70  E-value=5.2e-17  Score=147.42  Aligned_cols=135  Identities=21%  Similarity=0.279  Sum_probs=117.6

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +||++|+|+.++...|.  .+++|++|++++|.+..+....+.    .+++|+.|+|++|.+++..|..|..+++|++|+
T Consensus        37 L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~i~~~~~~----~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           37 IDLSFNPLKILKSYSFS--NFSELQWLDLSRCEIETIEDKAWH----GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             EECTTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTT----TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             EECCCCCcCEeChhhcc--CCccCcEEeCCCCcccccCHHHhh----chhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            68999999999998888  899999999999988876554443    388999999999999988899999999999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCC-CCcccccCCCcccEEecCCCccccCCCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSG-QIPQQLGELTTLEVFDVSDNLLTGPIPRG  142 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~  142 (242)
                      +++|.+++..+..++.+++|+.|++++|.+++ .+|..+..+++|++|++++|.+++..|..
T Consensus       111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~  172 (606)
T 3vq2_A          111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND  172 (606)
T ss_dssp             CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT
T ss_pred             ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhh
Confidence            99999997777889999999999999999986 56889999999999999999998766653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.70  E-value=2.9e-17  Score=148.22  Aligned_cols=155  Identities=23%  Similarity=0.223  Sum_probs=124.4

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcch-hccCCCCCCEE
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPT-SIANLKGLRTL   80 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~-~~~~l~~L~~L   80 (242)
                      +||++|+|+......|.  .+++|++|++++|.++..+.  .+..+..+++|+.|++++|.+++.+|. .+..+++|++|
T Consensus       358 L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~--~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L  433 (562)
T 3a79_B          358 LNFTQNVFTDSVFQGCS--TLKRLQTLILQRNGLKNFFK--VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL  433 (562)
T ss_dssp             EECCSSCCCTTTTTTCC--SCSSCCEEECCSSCCCBTTH--HHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEE
T ss_pred             EECCCCccccchhhhhc--ccCCCCEEECCCCCcCCccc--chhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEE
Confidence            68899999886666776  88999999999988774321  111234578899999999999974554 57889999999


Q ss_pred             eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC--CCCCCcCCccccCCCC
Q 026180           81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG--KQFNTFGKGSFDGNPG  158 (242)
Q Consensus        81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~--~~~~~~~~~~~~~n~~  158 (242)
                      ++++|++++..|..+.  ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|..  ..+..+..+.+.+||+
T Consensus       434 ~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          434 NLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             ECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCB
T ss_pred             ECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCc
Confidence            9999999877776654  78999999999999 67777779999999999999999 56654  3466778888999999


Q ss_pred             CCCCCC
Q 026180          159 LCGQPL  164 (242)
Q Consensus       159 ~c~~~~  164 (242)
                      .|+|+.
T Consensus       510 ~c~c~~  515 (562)
T 3a79_B          510 DCTCPG  515 (562)
T ss_dssp             CCCHHH
T ss_pred             CCCcch
Confidence            998854

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.70  E-value=1.7e-17  Score=138.52  Aligned_cols=151  Identities=19%  Similarity=0.160  Sum_probs=101.0

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +||++|+|..++.. |.  .+++|++|++++|.+......   ..+..+++|+.|++++|.+++..+..+..+++|++|+
T Consensus        83 L~Ls~n~i~~l~~~-~~--~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  156 (306)
T 2z66_A           83 LDLSFNGVITMSSN-FL--GLEQLEHLDFQHSNLKQMSEF---SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK  156 (306)
T ss_dssp             EECCSCSEEEEEEE-EE--TCTTCCEEECTTSEEESSTTT---TTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred             EECCCCccccChhh-cC--CCCCCCEEECCCCcccccccc---hhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence            45666666666553 33  566777777777766654320   1122366777777777777777777777777788888


Q ss_pred             ccCCCCCC-CCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC-CCCCCcCCccccCCCC
Q 026180           82 LSTNSLQG-HIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG-KQFNTFGKGSFDGNPG  158 (242)
Q Consensus        82 L~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~  158 (242)
                      +++|.+++ ..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+.. ..+..+..+.+.+|..
T Consensus       157 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI  235 (306)
T ss_dssp             CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred             CCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence            88877765 46677777778888888888877666777777778888888888777544422 2344556666666643

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.70  E-value=2.1e-17  Score=151.35  Aligned_cols=153  Identities=18%  Similarity=0.213  Sum_probs=104.3

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHH---HhhcCccEEEccCCCCccCcchhcc--CCCC
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYE---KLSNLITAIILSNNSFVGEIPTSIA--NLKG   76 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~~~~~L~~L~Ls~n~i~~~~p~~~~--~l~~   76 (242)
                      ++|++|+|+.+|...|.  .+++|++|++++|.+..++...+....   ..+++|+.|+|++|.++ .+|..+.  .+++
T Consensus       438 L~Ls~N~l~~lp~~~~~--~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~  514 (636)
T 4eco_A          438 INLSNNQISKFPKELFS--TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPY  514 (636)
T ss_dssp             EECCSSCCCSCCTHHHH--TTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTT
T ss_pred             EECcCCccCcCCHHHHc--cCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCC
Confidence            56677777777666655  566777777777777654444332210   11226777777777777 5666665  7777


Q ss_pred             CCEEeccCCCCCCCCCcccCCCCCCCEEeC------CCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCC
Q 026180           77 LRTLNLSTNSLQGHIPPTLGNLIVLESLDL------SNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGK  150 (242)
Q Consensus        77 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l------~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~  150 (242)
                      |+.|++++|++++ +|..+..+++|+.|++      ++|++.+.+|..+..+++|+.|++++|.+ +.+|.... ..+..
T Consensus       515 L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~  591 (636)
T 4eco_A          515 LVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISV  591 (636)
T ss_dssp             CCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCE
T ss_pred             cCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCE
Confidence            8888888888775 6777777778888877      45667777777777777888888888877 46666543 56667


Q ss_pred             ccccCCCCCC
Q 026180          151 GSFDGNPGLC  160 (242)
Q Consensus       151 ~~~~~n~~~c  160 (242)
                      +.+.+|+..|
T Consensus       592 L~Ls~N~l~~  601 (636)
T 4eco_A          592 LDIKDNPNIS  601 (636)
T ss_dssp             EECCSCTTCE
T ss_pred             EECcCCCCcc
Confidence            7777777665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.70  E-value=3.1e-17  Score=146.42  Aligned_cols=155  Identities=26%  Similarity=0.285  Sum_probs=125.3

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcch-hccCCCCCCEE
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPT-SIANLKGLRTL   80 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~-~~~~l~~L~~L   80 (242)
                      +||++|+|+......+.  .+++|++|++++|.+...+.  .+.....+++|+.|++++|.+++.+|. .+..+++|++|
T Consensus       329 L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~l~~--~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L  404 (520)
T 2z7x_B          329 LDFSNNLLTDTVFENCG--HLTELETLILQMNQLKELSK--IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL  404 (520)
T ss_dssp             EECCSSCCCTTTTTTCC--CCSSCCEEECCSSCCCBHHH--HHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEE
T ss_pred             EEeECCccChhhhhhhc--cCCCCCEEEccCCccCcccc--chHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEE
Confidence            68899999886556666  88899999999988864321  112245578999999999999975665 47889999999


Q ss_pred             eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC--CCCCCcCCccccCCCC
Q 026180           81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG--KQFNTFGKGSFDGNPG  158 (242)
Q Consensus        81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~--~~~~~~~~~~~~~n~~  158 (242)
                      ++++|++++..|..+.  ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|..  ..+..+..+.+.+|++
T Consensus       405 ~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          405 NMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW  480 (520)
T ss_dssp             ECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCC
Confidence            9999999888877664  79999999999999 77887889999999999999999 56654  2456778888999999


Q ss_pred             CCCCCC
Q 026180          159 LCGQPL  164 (242)
Q Consensus       159 ~c~~~~  164 (242)
                      .|+|+.
T Consensus       481 ~c~c~~  486 (520)
T 2z7x_B          481 DCSCPR  486 (520)
T ss_dssp             CCCHHH
T ss_pred             cccCCc
Confidence            998854

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.69  E-value=4.1e-18  Score=145.18  Aligned_cols=155  Identities=16%  Similarity=0.221  Sum_probs=93.0

Q ss_pred             cccCCCCCcccCC-CCCCCCCCCCCcccceeee-EEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCE
Q 026180            2 KDVNANNLTYLQD-PLLGPVRYPALTYYGFSYY-SLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRT   79 (242)
Q Consensus         2 ~dLs~N~i~~l~~-~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~   79 (242)
                      +||++|+|+.++. ..|.  .+++|++|++++| .+.......+    ..+++|+.|++++|.+++..|..+..+++|++
T Consensus       129 L~L~~n~l~~l~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  202 (353)
T 2z80_A          129 LNLLGNPYKTLGETSLFS--HLTKLQILRVGNMDTFTKIQRKDF----AGLTFLEELEIDASDLQSYEPKSLKSIQNVSH  202 (353)
T ss_dssp             EECTTCCCSSSCSSCSCT--TCTTCCEEEEEESSSCCEECTTTT----TTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred             EECCCCCCcccCchhhhc--cCCCCcEEECCCCccccccCHHHc----cCCCCCCEEECCCCCcCccCHHHHhccccCCe
Confidence            4555555555555 4444  5555555555554 2333322222    22455566666666666555555666666666


Q ss_pred             EeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCC-------------------------------CcccccCCCcccEE
Q 026180           80 LNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQ-------------------------------IPQQLGELTTLEVF  128 (242)
Q Consensus        80 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~-------------------------------~p~~~~~l~~L~~L  128 (242)
                      |++++|.+....+..+..+++|+.|++++|.+++.                               +|..+..+++|+.|
T Consensus       203 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L  282 (353)
T 2z80_A          203 LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLEL  282 (353)
T ss_dssp             EEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEE
T ss_pred             ecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEE
Confidence            66666665522222233456677777777777653                               23345678889999


Q ss_pred             ecCCCccccCCCCCC--CCCCcCCccccCCCCCCCCC
Q 026180          129 DVSDNLLTGPIPRGK--QFNTFGKGSFDGNPGLCGQP  163 (242)
Q Consensus       129 ~l~~N~l~~~~p~~~--~~~~~~~~~~~~n~~~c~~~  163 (242)
                      ++++|.++ .+|...  .+..+..+.+.+|++.|+|+
T Consensus       283 ~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          283 EFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            99999988 566543  46677788899999988875

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.69  E-value=2.9e-17  Score=145.12  Aligned_cols=130  Identities=18%  Similarity=0.185  Sum_probs=94.4

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +||++|+|+.++...|.  .+++|++|++++|.|.......+.    .+++|+.|+|++|.++...+..|..+++|++|+
T Consensus        37 L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           37 LDLGKNRIKTLNQDEFA--SFPHLEELELNENIVSAVEPGAFN----NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             EECCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTTT----TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred             EECCCCccceECHhHcc--CCCCCCEEECCCCccCEeChhhhh----CCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence            67888888888777777  778888888888877766444333    367777777777777755555677777777777


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCcccc
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTG  137 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  137 (242)
                      +++|.+.+..+..|..+++|+.|++++|.+++..|..|..+++|+.|++++|.+++
T Consensus       111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  166 (477)
T 2id5_A          111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS  166 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS
T ss_pred             CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc
Confidence            77777776667777777777777777777776666667777777777777776664

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.69  E-value=2.8e-17  Score=139.97  Aligned_cols=135  Identities=19%  Similarity=0.192  Sum_probs=99.0

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +||++|+|+.++...|.  .+++|++|++++|.+.......+.    .+++|+.|+|++|.+++..+..|..+++|++|+
T Consensus        57 L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           57 LDLSNNRITYISNSDLQ--RCVNLQALVLTSNGINTIEEDSFS----SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             EECTTSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTTT----TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred             EECCCCcCcccCHHHhc--cCCCCCEEECCCCccCccCHhhcC----CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence            57788888888877777  778888888888877765544332    367788888888888865555577888888888


Q ss_pred             ccCCCCCCCCC-cccCCCCCCCEEeCCCC-CCCCCCcccccCCCcccEEecCCCccccCCCCC
Q 026180           82 LSTNSLQGHIP-PTLGNLIVLESLDLSNN-KLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG  142 (242)
Q Consensus        82 L~~n~l~~~~p-~~~~~l~~L~~L~l~~N-~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~  142 (242)
                      +++|.+++..+ ..+..+++|+.|++++| .+++..|..+..+++|+.|++++|.+++..|..
T Consensus       131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  193 (353)
T 2z80_A          131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS  193 (353)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred             CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHH
Confidence            88888874333 36777888888888887 466555667777888888888888887665544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.69  E-value=3.3e-17  Score=145.63  Aligned_cols=110  Identities=21%  Similarity=0.165  Sum_probs=75.7

Q ss_pred             hhcCccEEEccCCCCccCcchhcc-CCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccE
Q 026180           49 LSNLITAIILSNNSFVGEIPTSIA-NLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEV  127 (242)
Q Consensus        49 ~~~~L~~L~Ls~n~i~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~  127 (242)
                      .+++|+.|+|++|.+++..|..+. .+++|++|+|++|.+++. |. ...+++|+.|++++|.+++.. ..+..+++|+.
T Consensus       142 ~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~  218 (487)
T 3oja_A          142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTW  218 (487)
T ss_dssp             GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSE
T ss_pred             CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCC-HhHcCCCCccE
Confidence            355666666666666665665554 566677777777766644 22 334778888888888888544 44778888888


Q ss_pred             EecCCCccccCCCCC-CCCCCcCCccccCCCCCCCC
Q 026180          128 FDVSDNLLTGPIPRG-KQFNTFGKGSFDGNPGLCGQ  162 (242)
Q Consensus       128 L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~~c~~  162 (242)
                      |++++|.+++ +|.. ..+..+..+.+.+|++.|++
T Consensus       219 L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~  253 (487)
T 3oja_A          219 ISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT  253 (487)
T ss_dssp             EECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred             EEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc
Confidence            8888888886 4443 34566777888999988764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.68  E-value=1.7e-17  Score=139.19  Aligned_cols=151  Identities=24%  Similarity=0.215  Sum_probs=89.4

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCcc---CcchhccCCCCCC
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVG---EIPTSIANLKGLR   78 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~---~~p~~~~~l~~L~   78 (242)
                      +||++|+|+.++...|.  .+++|++|++++|.+...........+..+++|+.|+|++|.+++   .....+..+++|+
T Consensus       154 L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~  231 (312)
T 1wwl_A          154 LSIAQAHSLNFSCEQVR--VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ  231 (312)
T ss_dssp             EEEESCSCCCCCTTTCC--CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCS
T ss_pred             EEeeCCCCccchHHHhc--cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCC
Confidence            56666666666666666  666777777766653210000000001335667777777777762   1123344667777


Q ss_pred             EEeccCCCCCCCCC-cccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCC
Q 026180           79 TLNLSTNSLQGHIP-PTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNP  157 (242)
Q Consensus        79 ~L~L~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~  157 (242)
                      +|++++|++++..| ..+..+++|+.|++++|+++ .+|..+.  ++|+.|++++|++++. |....+..+..+.+.+|+
T Consensus       232 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             EEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCT
T ss_pred             EEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCC
Confidence            77777777776554 34555677777777777777 5565554  6777777777777754 544445555666666665


Q ss_pred             C
Q 026180          158 G  158 (242)
Q Consensus       158 ~  158 (242)
                      .
T Consensus       308 l  308 (312)
T 1wwl_A          308 F  308 (312)
T ss_dssp             T
T ss_pred             C
Confidence            4

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.68  E-value=1e-16  Score=135.53  Aligned_cols=156  Identities=19%  Similarity=0.192  Sum_probs=115.8

Q ss_pred             CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEE-eecCCchh----hHHHhhcCccEEEccCCCCccCcchhccCCC
Q 026180            1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLT-LSNKGTEL----EYEKLSNLITAIILSNNSFVGEIPTSIANLK   75 (242)
Q Consensus         1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~----~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~   75 (242)
                      ++||++|+|+.+|.. |.  .+++|++|++++|.+. ..+.....    ..+..+++|+.|+|++|.++ .+|..+..++
T Consensus       131 ~L~Ls~n~l~~lp~~-l~--~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~  206 (328)
T 4fcg_A          131 TLTLARNPLRALPAS-IA--SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ  206 (328)
T ss_dssp             EEEEESCCCCCCCGG-GG--GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCT
T ss_pred             EEECCCCccccCcHH-Hh--cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCC
Confidence            368999999988764 55  7889999999886432 22221110    00122678888888888888 7788888888


Q ss_pred             CCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCcccc
Q 026180           76 GLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFD  154 (242)
Q Consensus        76 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~  154 (242)
                      +|++|++++|.++ .+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|... .+..+..+.+.
T Consensus       207 ~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~  285 (328)
T 4fcg_A          207 NLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR  285 (328)
T ss_dssp             TCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred             CCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence            8888888888888 466678888888888888888888888888888888888888888888888653 45566677777


Q ss_pred             CCCCCCC
Q 026180          155 GNPGLCG  161 (242)
Q Consensus       155 ~n~~~c~  161 (242)
                      +|+....
T Consensus       286 ~n~~~~~  292 (328)
T 4fcg_A          286 GCVNLSR  292 (328)
T ss_dssp             TCTTCCC
T ss_pred             CCCchhh
Confidence            7765443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.68  E-value=1.5e-16  Score=134.20  Aligned_cols=148  Identities=19%  Similarity=0.218  Sum_probs=92.0

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +++++|+|+.++...|.  .+++|++|++++|.+....  .....+..+++|+.|++++|.++ .+|..+.  ++|++|+
T Consensus       126 L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~--~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~  198 (330)
T 1xku_A          126 LRVHENEITKVRKSVFN--GLNQMIVVELGTNPLKSSG--IENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELH  198 (330)
T ss_dssp             EECCSSCCCBBCHHHHT--TCTTCCEEECCSSCCCGGG--BCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEE
T ss_pred             EECCCCcccccCHhHhc--CCccccEEECCCCcCCccC--cChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEE
Confidence            57888888888877776  7778888888877765311  11122233666777777777766 3444332  5666666


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNP  157 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~  157 (242)
                      +++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++ .+|... ....+..+.+.+|+
T Consensus       199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSC
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCc
Confidence            6666666666666666666666666666666555556666666666666666666 444332 33445555555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.67  E-value=3.8e-16  Score=119.74  Aligned_cols=92  Identities=20%  Similarity=0.209  Sum_probs=81.2

Q ss_pred             hcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEe
Q 026180           50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD  129 (242)
Q Consensus        50 ~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~  129 (242)
                      ++.++.|+|++|.|++..|..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+
T Consensus        29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  108 (170)
T 3g39_A           29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW  108 (170)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence            35678999999999988888999999999999999999977777789999999999999999977777799999999999


Q ss_pred             cCCCccccCCCC
Q 026180          130 VSDNLLTGPIPR  141 (242)
Q Consensus       130 l~~N~l~~~~p~  141 (242)
                      +++|++++..+.
T Consensus       109 L~~N~~~c~c~~  120 (170)
T 3g39_A          109 LLNNPWDCACSD  120 (170)
T ss_dssp             CCSSCBCTTBGG
T ss_pred             eCCCCCCCCchh
Confidence            999999877653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.67  E-value=5.2e-17  Score=140.06  Aligned_cols=131  Identities=19%  Similarity=0.183  Sum_probs=100.0

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +++++|.++.+|...|.  .+++|++|++++|.+.......+.    .+++|+.|+|++|.+++..|..|..+++|++|+
T Consensus        50 l~l~~~~l~~l~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           50 VTFKNSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTYAFA----YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             EEEESCEESEECTHHHH--HCCCCSEEECTTSCCCEECTTTTT----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             EEecCCchhhCChhHhc--ccccCcEEECCCCcccccChhhcc----CCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            56778888888877776  778888888888877766544433    377888888888888877777788888888888


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGP  138 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~  138 (242)
                      +++|.++...+..|..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence            888888844444467788888888888888877777788888888888888887743

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.67  E-value=1e-16  Score=144.28  Aligned_cols=134  Identities=21%  Similarity=0.285  Sum_probs=117.1

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +||++|+|+.++...|.  .+++|++|++++|.+..+....+.    .+++|+.|+|++|.+++..|..|..+++|++|+
T Consensus        33 L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           33 LDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQ----SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             EECCSCCCCEECTTTTT--TCSSCCEEECTTCCCCEECTTTTT----TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             EEccCCccCccChhHhh--CCCCceEEECCCCcCCccCccccc----CchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence            68999999999998888  899999999999988877655443    388999999999999988888999999999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCC-CCcccccCCCcccEEecCCCccccCCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSG-QIPQQLGELTTLEVFDVSDNLLTGPIPR  141 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~  141 (242)
                      +++|.+++..+..++.+++|++|++++|.+++ .+|..+..+++|+.|++++|.+++..|.
T Consensus       107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~  167 (570)
T 2z63_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (570)
T ss_dssp             CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred             ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence            99999996666679999999999999999986 3689999999999999999999865554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.67  E-value=8.3e-17  Score=122.85  Aligned_cols=126  Identities=21%  Similarity=0.186  Sum_probs=76.6

Q ss_pred             cccCCCCCc--ccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCE
Q 026180            2 KDVNANNLT--YLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRT   79 (242)
Q Consensus         2 ~dLs~N~i~--~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~   79 (242)
                      ++|++|+|+  .+|.. +.  .+++|++|++++|.|...  ..+    ..+++|+.|++++|.+++..|..+..+++|++
T Consensus        29 L~l~~n~l~~~~i~~~-~~--~l~~L~~L~l~~n~l~~~--~~~----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           29 LVLDNCKSNDGKIEGL-TA--EFVNLEFLSLINVGLISV--SNL----PKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             EECCSCBCBTTBCSSC-CG--GGGGCCEEEEESSCCCCC--SSC----CCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             EECCCCCCChhhHHHH-HH--hCCCCCEEeCcCCCCCCh--hhh----ccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            466666666  56543 33  566666676666666544  111    22566666777777666556666666666777


Q ss_pred             EeccCCCCCCCCC-cccCCCCCCCEEeCCCCCCCCCCc---ccccCCCcccEEecCCCccc
Q 026180           80 LNLSTNSLQGHIP-PTLGNLIVLESLDLSNNKLSGQIP---QQLGELTTLEVFDVSDNLLT  136 (242)
Q Consensus        80 L~L~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p---~~~~~l~~L~~L~l~~N~l~  136 (242)
                      |++++|.+++... ..+..+++|+.|++++|.+++..+   ..+..+++|+.|++++|.+.
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            7777776663321 456666666777777766664433   35666666666666666655

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.67  E-value=7.7e-17  Score=146.31  Aligned_cols=133  Identities=20%  Similarity=0.184  Sum_probs=106.1

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +||++|+|+.+++..|.  .+++|++|++++|.+..+....+.    .+++|+.|+|++|.+++..|..|..+++|++|+
T Consensus        38 L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  111 (606)
T 3t6q_A           38 LEFSFNVLPTIQNTTFS--RLINLTFLDLTRCQIYWIHEDTFQ----SQHRLDTLVLTANPLIFMAETALSGPKALKHLF  111 (606)
T ss_dssp             EECTTCCCSEECTTTST--TCTTCSEEECTTCCCCEECTTTTT----TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred             EEccCCccCcCChhHhc--cCccceEEECCCCccceeChhhcc----CccccCeeeCCCCcccccChhhhcccccccEee
Confidence            68889999888888888  888899999988888766544443    378888888888888877888888888888888


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP  140 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  140 (242)
                      +++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+++..|
T Consensus       112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  170 (606)
T 3t6q_A          112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK  170 (606)
T ss_dssp             CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred             ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence            88888886667778888888888888888886443444458888888888888876544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.67  E-value=1.8e-17  Score=138.90  Aligned_cols=150  Identities=24%  Similarity=0.242  Sum_probs=69.4

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcch----hccCCCCC
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPT----SIANLKGL   77 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~----~~~~l~~L   77 (242)
                      ++|++|+|..++...|.  .+++|++|++++|.+..............+++|+.|+|++|+++ .++.    .+..+++|
T Consensus       150 L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L  226 (310)
T 4glp_A          150 LSIAQAHSPAFSCEQVR--AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQP  226 (310)
T ss_dssp             EEEECCSSCCCCTTSCC--CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCC
T ss_pred             EEeeCCCcchhhHHHhc--cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCC
Confidence            34555555555555554  45555555555554321000000000112445555555555554 2222    13445555


Q ss_pred             CEEeccCCCCCCCCCcccCCC---CCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCcccc
Q 026180           78 RTLNLSTNSLQGHIPPTLGNL---IVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFD  154 (242)
Q Consensus        78 ~~L~L~~n~l~~~~p~~~~~l---~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~  154 (242)
                      ++|++++|++++..|..+..+   ++|+.|++++|+++ .+|..+.  ++|+.|++++|++++. |....+..+..+.+.
T Consensus       227 ~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~  302 (310)
T 4glp_A          227 HSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLD  302 (310)
T ss_dssp             SSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECS
T ss_pred             CEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECc
Confidence            555555555555445444443   45555555555555 3444332  4555555555555532 222233444455555


Q ss_pred             CCCC
Q 026180          155 GNPG  158 (242)
Q Consensus       155 ~n~~  158 (242)
                      +|+.
T Consensus       303 ~N~l  306 (310)
T 4glp_A          303 GNPF  306 (310)
T ss_dssp             STTT
T ss_pred             CCCC
Confidence            5543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.67  E-value=9.5e-17  Score=147.65  Aligned_cols=149  Identities=21%  Similarity=0.199  Sum_probs=99.2

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +||++|+|+.++...|.  .+++|++|++++|.+.....    ..+..+++|+.|+|++|.+++..+..|..+++|++|+
T Consensus        30 L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           30 LNLTHNQLRRLPAANFT--RYSQLTSLDVGFNTISKLEP----ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             EECCSSCCCCCCGGGGG--GGTTCSEEECCSSCCCCCCT----THHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             EECCCCCCCCcCHHHHh--CCCcCcEEECCCCccCccCH----HHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            56777777777776666  67777777777776654332    2234467777777777777755455677777777777


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC---CCCCcCCccccCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK---QFNTFGKGSFDGN  156 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~---~~~~~~~~~~~~n  156 (242)
                      +++|++++..|..|..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+...   ....+..+.+.+|
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n  181 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN  181 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred             CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence            77777776666667777777777777777777667777777777777777777765544321   1234445555555

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.66  E-value=2.6e-16  Score=135.63  Aligned_cols=105  Identities=18%  Similarity=0.200  Sum_probs=47.5

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +||++|+|+.++...|.  .+++|++|++++|.+.......+    ..+++|+.|+|++|.++...+..|..+++|++|+
T Consensus        74 L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  147 (390)
T 3o6n_A           74 LNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVF----QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS  147 (390)
T ss_dssp             EECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             EECCCCcccccChhhcc--CCCCcCEEECCCCCCCcCCHHHh----cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence            34555555555554444  45555555555554443322221    1244444444444444432222334444444444


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLS  112 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  112 (242)
                      +++|.+++..|..+..+++|+.|++++|+++
T Consensus       148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             CCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             CCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence            4444444444444444444444444444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.66  E-value=1e-16  Score=135.33  Aligned_cols=82  Identities=23%  Similarity=0.243  Sum_probs=41.6

Q ss_pred             CCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccc
Q 026180           75 KGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSF  153 (242)
Q Consensus        75 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~  153 (242)
                      ++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.++ .+|... .+..+..+.+
T Consensus       193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l  271 (332)
T 2ft3_A          193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL  271 (332)
T ss_dssp             SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEEC
Confidence            34555555555555444455555555555555555555444445555555555555555555 333321 2333444444


Q ss_pred             cCCC
Q 026180          154 DGNP  157 (242)
Q Consensus       154 ~~n~  157 (242)
                      .+|.
T Consensus       272 ~~N~  275 (332)
T 2ft3_A          272 HTNN  275 (332)
T ss_dssp             CSSC
T ss_pred             CCCC
Confidence            4443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.66  E-value=9e-17  Score=146.11  Aligned_cols=131  Identities=19%  Similarity=0.183  Sum_probs=105.1

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +++++|.+..+|...|.  .+++|++|++++|.|.......+.    .+++|+.|+|++|.+++..|..|+.+++|++|+
T Consensus        56 l~l~~~~l~~lp~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           56 VTFKNSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTYAFA----YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             EEESSCEESEECTHHHH--HCCCCSEEECTTSCCCEECTTTTT----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             EEeeCCCCCCcCHHHHc--cCCCCcEEECCCCCCCCCChHHhc----CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            56788888888887777  788888888888888766544443    377888888888888877777888888888888


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGP  138 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~  138 (242)
                      |++|.+++..+..|..+++|+.|++++|.+++..|..|..+++|+.|++++|.+++.
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  186 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  186 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence            888888855555578888888888888888887777888888888888888888754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.66  E-value=2.6e-16  Score=143.09  Aligned_cols=81  Identities=22%  Similarity=0.259  Sum_probs=41.0

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +||++|.|+.++...|.  .+++|++|++++|.|..++...+    ..+++|+.|+|++|.+++..|..|..+++|++|+
T Consensus       104 L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~~~~~----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  177 (597)
T 3oja_B          104 LYMGFNAIRYLPPHVFQ--NVPLLTVLVLERNDLSSLPRGIF----HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ  177 (597)
T ss_dssp             EECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             EECCCCcCCCCCHHHHc--CCCCCCEEEeeCCCCCCCCHHHh----ccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEE
Confidence            34555555555554444  45555555555554443332222    2245555555555555555555555555555555


Q ss_pred             ccCCCCC
Q 026180           82 LSTNSLQ   88 (242)
Q Consensus        82 L~~n~l~   88 (242)
                      +++|.++
T Consensus       178 L~~N~l~  184 (597)
T 3oja_B          178 LSSNRLT  184 (597)
T ss_dssp             CTTSCCS
T ss_pred             CcCCCCC
Confidence            5555554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.65  E-value=1.1e-16  Score=143.64  Aligned_cols=135  Identities=19%  Similarity=0.198  Sum_probs=101.6

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +||++|+|+.++...|.  .+++|++|++++|.+.......+.    .+++|+.|+|++|.+++..|..|..+++|++|+
T Consensus        31 L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           31 LDLSFNKITYIGHGDLR--ACANLQVLILKSSRINTIEGDAFY----SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             EECCSSCCCEECSSTTS--SCTTCCEEECTTSCCCEECTTTTT----TCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             EECcCCccCccChhhhh--cCCcccEEECCCCCcCccChhhcc----ccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            67888888888777777  778888888888877766544333    377888888888888877777788888888888


Q ss_pred             ccCCCCCCC-CCcccCCCCCCCEEeCCCCCCCCCCc-ccccCCCcccEEecCCCccccCCCCC
Q 026180           82 LSTNSLQGH-IPPTLGNLIVLESLDLSNNKLSGQIP-QQLGELTTLEVFDVSDNLLTGPIPRG  142 (242)
Q Consensus        82 L~~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~  142 (242)
                      +++|.+++. .|..+..+++|+.|++++|.+.+.+| ..+..+++|+.|++++|.+++..|..
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  167 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS  167 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence            888888753 45677888888888888887443444 56788888888888888888766654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.65  E-value=7.6e-16  Score=118.50  Aligned_cols=132  Identities=23%  Similarity=0.186  Sum_probs=109.4

Q ss_pred             CcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEE
Q 026180           25 LTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESL  104 (242)
Q Consensus        25 L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  104 (242)
                      .+.++++++.+..++.       ..++.|+.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|
T Consensus         9 ~~~l~~~~~~l~~~p~-------~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   81 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPT-------GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL   81 (177)
T ss_dssp             TTEEECCSSCCSSCCT-------TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCEEEecCCCCccCCC-------CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEE
Confidence            3556666666554432       235789999999999997777788999999999999999997777778999999999


Q ss_pred             eCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC-CCCCCcCCccccCCCCCCCCC
Q 026180          105 DLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG-KQFNTFGKGSFDGNPGLCGQP  163 (242)
Q Consensus       105 ~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~~c~~~  163 (242)
                      ++++|.+++..+..+..+++|+.|++++|.+++..+.. ..+..+..+.+.+|++.|+|+
T Consensus        82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           82 YLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            99999999877777899999999999999999655443 246678888999999998775

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.65  E-value=8.9e-17  Score=135.06  Aligned_cols=148  Identities=19%  Similarity=0.141  Sum_probs=110.8

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhcc-CCCCCCEE
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIA-NLKGLRTL   80 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~-~l~~L~~L   80 (242)
                      +++++|+|+.++..     .+++|++|++++|.+.......+    ..+++|+.|+|++|.+++..+..+. .+++|++|
T Consensus       104 L~l~~n~l~~~~~~-----~~~~L~~L~l~~N~l~~~~~~~~----~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L  174 (317)
T 3o53_A          104 LHAANNNISRVSCS-----RGQGKKNIYLANNKITMLRDLDE----GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL  174 (317)
T ss_dssp             EECCSSCCSEEEEC-----CCSSCEEEECCSSCCCSGGGBCT----GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred             EECCCCccCCcCcc-----ccCCCCEEECCCCCCCCccchhh----hccCCCCEEECCCCCCCcccHHHHhhccCcCCEE
Confidence            46666766666644     35578888888887775443333    3478899999999999877777664 78899999


Q ss_pred             eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC-CCCCCcCCccccCCCCC
Q 026180           81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG-KQFNTFGKGSFDGNPGL  159 (242)
Q Consensus        81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~~  159 (242)
                      ++++|.+++. +. ...+++|+.|++++|++++. |..+..+++|+.|++++|.++. +|.. ..+..+..+.+.+|++.
T Consensus       175 ~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          175 NLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             ECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCB
T ss_pred             ECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCcc
Confidence            9999999855 33 34588999999999999854 5558888999999999999985 4543 34567778888999988


Q ss_pred             CCC
Q 026180          160 CGQ  162 (242)
Q Consensus       160 c~~  162 (242)
                      |++
T Consensus       251 ~~~  253 (317)
T 3o53_A          251 CGT  253 (317)
T ss_dssp             HHH
T ss_pred             CcC
Confidence            754

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.65  E-value=3.1e-16  Score=147.90  Aligned_cols=150  Identities=18%  Similarity=0.126  Sum_probs=118.5

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeE-EEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYS-LTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL   80 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L   80 (242)
                      +||++|+|+.++...|.  .+++|++|++++|. +..+....+    ..+++|+.|+|++|.+++..|..|..+++|++|
T Consensus        29 LdLs~N~i~~i~~~~~~--~l~~L~~LdLs~n~~~~~i~~~~f----~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           29 LLLSFNYIRTVTASSFP--FLEQLQLLELGSQYTPLTIDKEAF----RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             EEEESCCCCEECSSSCS--SCCSCSEEEECTTCCCCEECTTTT----SSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred             EECCCCcCCccChhHCc--ccccCeEEeCCCCCCccccCHHHh----cCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence            68999999999888888  88999999998873 333322323    347889999999999998889999999999999


Q ss_pred             eccCCCCCCCCCcc--cCCCCCCCEEeCCCCCCCCCCc-ccccCCCcccEEecCCCccccCCCCCCC-C--CCcCCcccc
Q 026180           81 NLSTNSLQGHIPPT--LGNLIVLESLDLSNNKLSGQIP-QQLGELTTLEVFDVSDNLLTGPIPRGKQ-F--NTFGKGSFD  154 (242)
Q Consensus        81 ~L~~n~l~~~~p~~--~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~~~-~--~~~~~~~~~  154 (242)
                      +|++|.+++..|..  +..+++|+.|++++|.+++..+ ..|..+++|+.|++++|.+++..|.... +  ..+..+.+.
T Consensus       103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~  182 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA  182 (844)
T ss_dssp             ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred             eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence            99999998766665  8899999999999999987655 5789999999999999999877665431 1  345555555


Q ss_pred             CCC
Q 026180          155 GNP  157 (242)
Q Consensus       155 ~n~  157 (242)
                      +|.
T Consensus       183 ~n~  185 (844)
T 3j0a_A          183 ANS  185 (844)
T ss_dssp             CSB
T ss_pred             CCc
Confidence            553

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.64  E-value=1.2e-15  Score=117.43  Aligned_cols=91  Identities=21%  Similarity=0.226  Sum_probs=78.8

Q ss_pred             hcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEe
Q 026180           50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD  129 (242)
Q Consensus        50 ~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~  129 (242)
                      +..|+.|+|++|.|++..|..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+
T Consensus        32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  111 (174)
T 2r9u_A           32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY  111 (174)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence            35688999999999988888999999999999999999976666678999999999999999976666688999999999


Q ss_pred             cCCCccccCCC
Q 026180          130 VSDNLLTGPIP  140 (242)
Q Consensus       130 l~~N~l~~~~p  140 (242)
                      +++|++.+..+
T Consensus       112 L~~N~~~c~~~  122 (174)
T 2r9u_A          112 LYNNPWDCECR  122 (174)
T ss_dssp             CCSSCBCTTBG
T ss_pred             eCCCCcccccc
Confidence            99999986554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=2.7e-16  Score=148.14  Aligned_cols=102  Identities=19%  Similarity=0.255  Sum_probs=45.3

Q ss_pred             CccEEEccCCCCccCcchhcc--CCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCC------CCCCCCCcccccCCC
Q 026180           52 LITAIILSNNSFVGEIPTSIA--NLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSN------NKLSGQIPQQLGELT  123 (242)
Q Consensus        52 ~L~~L~Ls~n~i~~~~p~~~~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~------N~l~~~~p~~~~~l~  123 (242)
                      +|+.|+|++|.++ .+|..+.  .+++|+.|+|++|.+++ +|..+..+++|+.|++++      |++.+.+|..+..++
T Consensus       729 ~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~  806 (876)
T 4ecn_A          729 LLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP  806 (876)
T ss_dssp             GCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred             CccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence            4444444444444 3444443  44444444444444443 344444444444444433      344444444444444


Q ss_pred             cccEEecCCCccccCCCCCCCCCCcCCccccCCC
Q 026180          124 TLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNP  157 (242)
Q Consensus       124 ~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~  157 (242)
                      +|+.|++++|.+ +.+|.... ..+..+++.+|+
T Consensus       807 ~L~~L~Ls~N~L-~~Ip~~l~-~~L~~LdLs~N~  838 (876)
T 4ecn_A          807 SLIQLQIGSNDI-RKVDEKLT-PQLYILDIADNP  838 (876)
T ss_dssp             SCCEEECCSSCC-CBCCSCCC-SSSCEEECCSCT
T ss_pred             CCCEEECCCCCC-CccCHhhc-CCCCEEECCCCC
Confidence            444444444444 34444321 233344444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.64  E-value=9e-17  Score=134.74  Aligned_cols=154  Identities=17%  Similarity=0.126  Sum_probs=111.5

Q ss_pred             cccCCCCCc-ccCCCCC-CCCCCCCCcccceeeeEEEeecCCchhhH-HHhhcCccEEEccCCCCccCcchhccCCCCCC
Q 026180            2 KDVNANNLT-YLQDPLL-GPVRYPALTYYGFSYYSLTLSNKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLR   78 (242)
Q Consensus         2 ~dLs~N~i~-~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~   78 (242)
                      +||++|+|+ .+|...| .  .+++|++|++++|.+...+ ..+... ...+++|+.|+|++|.+++..|..|..+++|+
T Consensus       100 L~L~~n~l~~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~  176 (312)
T 1wwl_A          100 LTLENLEVTGTAPPPLLEA--TGPDLNILNLRNVSWATRD-AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS  176 (312)
T ss_dssp             EEEEEEBCBSCCCCCSSSC--CSCCCSEEEEESCBCSSSS-SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred             EEccCCcccchhHHHHHHh--cCCCccEEEccCCCCcchh-HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence            678899988 4666554 4  7889999999998887542 111110 00127899999999999988888899999999


Q ss_pred             EEeccCCCCCCC--CCccc--CCCCCCCEEeCCCCCCCCC--Cc-ccccCCCcccEEecCCCccccCCCCC--CCCCCcC
Q 026180           79 TLNLSTNSLQGH--IPPTL--GNLIVLESLDLSNNKLSGQ--IP-QQLGELTTLEVFDVSDNLLTGPIPRG--KQFNTFG  149 (242)
Q Consensus        79 ~L~L~~n~l~~~--~p~~~--~~l~~L~~L~l~~N~l~~~--~p-~~~~~l~~L~~L~l~~N~l~~~~p~~--~~~~~~~  149 (242)
                      +|++++|++.+.  .|..+  ..+++|+.|++++|++++.  ++ ..+..+++|+.|++++|.+++..|..  .....+.
T Consensus       177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~  256 (312)
T 1wwl_A          177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN  256 (312)
T ss_dssp             EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred             EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence            999999998765  23334  7888999999999998832  12 33457788999999999998766432  2345667


Q ss_pred             CccccCCCC
Q 026180          150 KGSFDGNPG  158 (242)
Q Consensus       150 ~~~~~~n~~  158 (242)
                      .+.+++|..
T Consensus       257 ~L~Ls~N~l  265 (312)
T 1wwl_A          257 SLNLSFTGL  265 (312)
T ss_dssp             EEECTTSCC
T ss_pred             EEECCCCcc
Confidence            777777754

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.64  E-value=2.5e-16  Score=126.90  Aligned_cols=148  Identities=15%  Similarity=0.071  Sum_probs=119.2

Q ss_pred             cccCCCC-CcccCCCCCCCCCCCCCcccceee-eEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCC-
Q 026180            2 KDVNANN-LTYLQDPLLGPVRYPALTYYGFSY-YSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLR-   78 (242)
Q Consensus         2 ~dLs~N~-i~~l~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~-   78 (242)
                      +||++|+ |+.++...|.  .+++|++|++++ |.+..+....+..    +++|+.|++++|.+++ +|. |..+++|+ 
T Consensus        60 L~l~~n~~l~~i~~~~f~--~l~~L~~L~l~~~n~l~~i~~~~f~~----l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~  131 (239)
T 2xwt_C           60 IYVSIDVTLQQLESHSFY--NLSKVTHIEIRNTRNLTYIDPDALKE----LPLLKFLGIFNTGLKM-FPD-LTKVYSTDI  131 (239)
T ss_dssp             EEEECCSSCCEECTTTEE--SCTTCCEEEEEEETTCCEECTTSEEC----CTTCCEEEEEEECCCS-CCC-CTTCCBCCS
T ss_pred             EeCCCCCCcceeCHhHcC--CCcCCcEEECCCCCCeeEcCHHHhCC----CCCCCEEeCCCCCCcc-ccc-ccccccccc
Confidence            6899997 9999999998  899999999998 9998776555433    7889999999999995 666 88888888 


Q ss_pred             --EEeccCC-CCCCCCCcccCCCCCCC-EEeCCCCCCCCCCcccccCCCcccEEecCCCc-cccCCCCCC-CC-CCcCCc
Q 026180           79 --TLNLSTN-SLQGHIPPTLGNLIVLE-SLDLSNNKLSGQIPQQLGELTTLEVFDVSDNL-LTGPIPRGK-QF-NTFGKG  151 (242)
Q Consensus        79 --~L~L~~n-~l~~~~p~~~~~l~~L~-~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~-l~~~~p~~~-~~-~~~~~~  151 (242)
                        +|++++| .+++..+..|..+++|+ .|++++|+++...+..+.. ++|+.|++++|+ +++..+... .. ..+..+
T Consensus       132 L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L  210 (239)
T 2xwt_C          132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL  210 (239)
T ss_dssp             EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEE
T ss_pred             ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEE
Confidence              9999999 99977777899999999 9999999998443334444 899999999995 885444432 34 567777


Q ss_pred             cccCCCC
Q 026180          152 SFDGNPG  158 (242)
Q Consensus       152 ~~~~n~~  158 (242)
                      .+.+|..
T Consensus       211 ~l~~N~l  217 (239)
T 2xwt_C          211 DVSQTSV  217 (239)
T ss_dssp             ECTTCCC
T ss_pred             ECCCCcc
Confidence            7877754

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.62  E-value=8.5e-16  Score=129.51  Aligned_cols=145  Identities=17%  Similarity=0.134  Sum_probs=108.1

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCcc--CcchhccCCCCCCE
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVG--EIPTSIANLKGLRT   79 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--~~p~~~~~l~~L~~   79 (242)
                      +||++|+|+++|...+     ++|++|++++|.+....    ...+..+++|+.|++++|.++.  ..+..+..+++|++
T Consensus       105 L~Ls~n~l~~l~~~~~-----~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~  175 (330)
T 1xku_A          105 LYLSKNQLKELPEKMP-----KTLQELRVHENEITKVR----KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY  175 (330)
T ss_dssp             EECCSSCCSBCCSSCC-----TTCCEEECCSSCCCBBC----HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred             EECCCCcCCccChhhc-----ccccEEECCCCcccccC----HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence            6788888888887653     57888888888776433    2333457888888888888853  66777888888888


Q ss_pred             EeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCCC
Q 026180           80 LNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNPG  158 (242)
Q Consensus        80 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~~  158 (242)
                      |++++|.++ .+|..+.  ++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+... .+..+..+.+.+|..
T Consensus       176 L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  252 (330)
T 1xku_A          176 IRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL  252 (330)
T ss_dssp             EECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred             EECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence            888888888 5565443  788888888888887777888888888888888888886655432 345566666777643

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=1.9e-16  Score=118.40  Aligned_cols=108  Identities=18%  Similarity=0.159  Sum_probs=56.5

Q ss_pred             CCCcccceeeeEEE--eecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCC
Q 026180           23 PALTYYGFSYYSLT--LSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIV  100 (242)
Q Consensus        23 ~~L~~L~l~~n~l~--~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  100 (242)
                      ++|+.|++++|.+.  ..+..     ...+++|+.|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~-----~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~   89 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGL-----TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN   89 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSC-----CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred             ccCeEEEccCCcCChhHHHHH-----HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence            45555555555544  22211     11245555566665555543  44555555666666666655445555555555


Q ss_pred             CCEEeCCCCCCCCC-CcccccCCCcccEEecCCCcccc
Q 026180          101 LESLDLSNNKLSGQ-IPQQLGELTTLEVFDVSDNLLTG  137 (242)
Q Consensus       101 L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~  137 (242)
                      |+.|++++|.+++. .+..+..+++|+.|++++|.+++
T Consensus        90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~  127 (149)
T 2je0_A           90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN  127 (149)
T ss_dssp             CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred             CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence            66666666655542 22445555556666666655554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.62  E-value=2.5e-16  Score=140.50  Aligned_cols=144  Identities=19%  Similarity=0.131  Sum_probs=117.1

Q ss_pred             CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180            1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL   80 (242)
Q Consensus         1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L   80 (242)
                      ++|+++|+|+.+|...+     ++|++|++++|.+....    ...+..+++|+.|+|++|.+++..|..|..+++|++|
T Consensus         4 ~l~ls~n~l~~ip~~~~-----~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L   74 (520)
T 2z7x_B            4 LVDRSKNGLIHVPKDLS-----QKTTILNISQNYISELW----TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYL   74 (520)
T ss_dssp             EEECTTSCCSSCCCSCC-----TTCSEEECCSSCCCCCC----HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEE
T ss_pred             eEecCCCCccccccccc-----ccccEEECCCCcccccC----hhhccccccccEEecCCCccCCcChHHhhcccCCCEE
Confidence            37999999999998653     69999999999887443    2334558899999999999998889999999999999


Q ss_pred             eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCC-CCcccccCCCcccEEecCCCccccCCCCCCCCCCc--CCccccCCC
Q 026180           81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSG-QIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTF--GKGSFDGNP  157 (242)
Q Consensus        81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~--~~~~~~~n~  157 (242)
                      ++++|+++ .+|..  .+++|++|++++|.+++ .+|..++.+++|++|++++|.+++..  ...+..+  ..+.+.+|.
T Consensus        75 ~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~L~L~~L~l~~n~  149 (520)
T 2z7x_B           75 DLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS--VLPIAHLNISKVLLVLGE  149 (520)
T ss_dssp             ECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGG--GGGGTTSCEEEEEEEECT
T ss_pred             ecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhh--ccccccceeeEEEeeccc
Confidence            99999999 66765  89999999999999997 47899999999999999999987521  1122333  445555554


Q ss_pred             C
Q 026180          158 G  158 (242)
Q Consensus       158 ~  158 (242)
                      .
T Consensus       150 l  150 (520)
T 2z7x_B          150 T  150 (520)
T ss_dssp             T
T ss_pred             c
Confidence            3

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.61  E-value=4.9e-16  Score=130.04  Aligned_cols=157  Identities=13%  Similarity=0.040  Sum_probs=116.5

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      ++|++|++.......+....+++|++|++++|.+..............+++|+.|+|++|.+++..+..|..+++|++|+
T Consensus        96 L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  175 (310)
T 4glp_A           96 LTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLD  175 (310)
T ss_dssp             EEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEE
T ss_pred             EEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEE
Confidence            68999999877666651128999999999999887422222212223478999999999999988889999999999999


Q ss_pred             ccCCCCCCC--C--CcccCCCCCCCEEeCCCCCCCCCCcc----cccCCCcccEEecCCCccccCCCCCC-CC---CCcC
Q 026180           82 LSTNSLQGH--I--PPTLGNLIVLESLDLSNNKLSGQIPQ----QLGELTTLEVFDVSDNLLTGPIPRGK-QF---NTFG  149 (242)
Q Consensus        82 L~~n~l~~~--~--p~~~~~l~~L~~L~l~~N~l~~~~p~----~~~~l~~L~~L~l~~N~l~~~~p~~~-~~---~~~~  149 (242)
                      +++|++.+.  +  +..+..+++|+.|++++|+++ .+|.    .+..+++|++|++++|.+++..|... .+   ..+.
T Consensus       176 Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~  254 (310)
T 4glp_A          176 LSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALN  254 (310)
T ss_dssp             CCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCC
T ss_pred             CCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCC
Confidence            999998652  2  223467888999999999987 3333    25677889999999999988766543 22   4667


Q ss_pred             CccccCCCCC
Q 026180          150 KGSFDGNPGL  159 (242)
Q Consensus       150 ~~~~~~n~~~  159 (242)
                      .+.+++|...
T Consensus       255 ~L~Ls~N~l~  264 (310)
T 4glp_A          255 SLNLSFAGLE  264 (310)
T ss_dssp             CEECCSSCCC
T ss_pred             EEECCCCCCC
Confidence            7777777543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.61  E-value=8.2e-16  Score=127.80  Aligned_cols=101  Identities=21%  Similarity=0.317  Sum_probs=45.8

Q ss_pred             hcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEe
Q 026180           50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD  129 (242)
Q Consensus        50 ~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~  129 (242)
                      +++|+.|++++|.+++.  ..+..+++|+.|++++|++++.  +.+..+++|+.|++++|++++..|  +..+++|+.|+
T Consensus       111 l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~  184 (291)
T 1h6t_A          111 LKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY  184 (291)
T ss_dssp             CTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEE
Confidence            34444444444444432  2344444555555555555432  334445555555555555543322  44555555555


Q ss_pred             cCCCccccCCCCCCCCCCcCCccccCCC
Q 026180          130 VSDNLLTGPIPRGKQFNTFGKGSFDGNP  157 (242)
Q Consensus       130 l~~N~l~~~~p~~~~~~~~~~~~~~~n~  157 (242)
                      +++|.+++ +|....+..+..+.+.+|+
T Consensus       185 L~~N~i~~-l~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          185 LSKNHISD-LRALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             CCSSCCCB-CGGGTTCTTCSEEEEEEEE
T ss_pred             CCCCcCCC-ChhhccCCCCCEEECcCCc
Confidence            55555543 2222233334444444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.61  E-value=2.9e-16  Score=139.55  Aligned_cols=105  Identities=20%  Similarity=0.074  Sum_probs=59.0

Q ss_pred             cCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccC-CCCCCCEEeCCCCCCCCCCcccccCCCcccEEe
Q 026180           51 NLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLG-NLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD  129 (242)
Q Consensus        51 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~  129 (242)
                      ++|+.|+|++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+++. |. +..+++|+.|+
T Consensus       120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~  197 (487)
T 3oja_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLD  197 (487)
T ss_dssp             SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEE
T ss_pred             CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEE
Confidence            3445555555555555555555566666666666666655555554 456666666666666543 22 23456666666


Q ss_pred             cCCCccccCCCCCCCCCCcCCccccCCC
Q 026180          130 VSDNLLTGPIPRGKQFNTFGKGSFDGNP  157 (242)
Q Consensus       130 l~~N~l~~~~p~~~~~~~~~~~~~~~n~  157 (242)
                      +++|.+++..|....+..+..+.+.+|.
T Consensus       198 Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~  225 (487)
T 3oja_A          198 LSSNKLAFMGPEFQSAAGVTWISLRNNK  225 (487)
T ss_dssp             CCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred             CCCCCCCCCCHhHcCCCCccEEEecCCc
Confidence            6666666544443334455555566654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.60  E-value=8.8e-15  Score=123.46  Aligned_cols=123  Identities=20%  Similarity=0.266  Sum_probs=86.1

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +++++|.++.+|...+     ++++.|++++|.+.......+    ..+++|+.|+|++|.+++..|..|..+++|++|+
T Consensus        38 l~~~~~~l~~ip~~~~-----~~l~~L~l~~n~i~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           38 VQCSDLGLKAVPKEIS-----PDTTLLDLQNNDISELRKDDF----KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             EECCSSCCSSCCSCCC-----TTCCEEECCSSCCCEECTTTT----TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred             EECCCCCccccCCCCC-----CCCeEEECCCCcCCccCHhHh----hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence            5677777777776542     467777777777766544333    2367777788887777766677777777788888


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccc
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT  136 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~  136 (242)
                      +++|.++ .+|..+.  ++|+.|++++|.+++..+..+..+++|+.|++++|.++
T Consensus       109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             CCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             CCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence            8777777 5555443  67777777777777655556777777777777777774

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.60  E-value=1.1e-15  Score=137.86  Aligned_cols=144  Identities=22%  Similarity=0.149  Sum_probs=116.2

Q ss_pred             CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180            1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL   80 (242)
Q Consensus         1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L   80 (242)
                      ++|+++|+++.+|...+     ++|++|++++|.|.......+    ..+++|+.|+|++|.+++..|..|..+++|++|
T Consensus        35 ~l~ls~~~L~~ip~~~~-----~~L~~L~Ls~N~i~~~~~~~~----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  105 (562)
T 3a79_B           35 MVDYSNRNLTHVPKDLP-----PRTKALSLSQNSISELRMPDI----SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL  105 (562)
T ss_dssp             EEECTTSCCCSCCTTSC-----TTCCEEECCSSCCCCCCGGGT----TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             EEEcCCCCCccCCCCCC-----CCcCEEECCCCCccccChhhh----ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence            37899999999998653     689999999999886553333    448899999999999998889999999999999


Q ss_pred             eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCC-CcccccCCCcccEEecCCCccccCCCCCCCCCCc--CCccccCCC
Q 026180           81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQ-IPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTF--GKGSFDGNP  157 (242)
Q Consensus        81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~--~~~~~~~n~  157 (242)
                      ++++|+++ .+|..  .+++|+.|++++|++++. .|..|..+++|+.|++++|.+++...  ..+..+  ..+.+.+|.
T Consensus       106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~--~~l~~L~L~~L~L~~n~  180 (562)
T 3a79_B          106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL--LPVAHLHLSCILLDLVS  180 (562)
T ss_dssp             ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTT--GGGTTSCEEEEEEEESS
T ss_pred             ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCch--hhhhhceeeEEEeeccc
Confidence            99999999 66765  899999999999999963 46889999999999999999975221  122333  555555554


Q ss_pred             C
Q 026180          158 G  158 (242)
Q Consensus       158 ~  158 (242)
                      .
T Consensus       181 l  181 (562)
T 3a79_B          181 Y  181 (562)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.60  E-value=1.6e-15  Score=124.29  Aligned_cols=142  Identities=21%  Similarity=0.201  Sum_probs=106.1

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +++++|+|++++  .+.  .+++|++|++++|.|.....      ...+++|+.|+|++|.+++ +|.. .. ++|++|+
T Consensus        46 L~l~~n~i~~l~--~l~--~l~~L~~L~L~~N~i~~~~~------l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~  112 (263)
T 1xeu_A           46 FNGDNSNIQSLA--GMQ--FFTNLKELHLSHNQISDLSP------LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLF  112 (263)
T ss_dssp             EECTTSCCCCCT--TGG--GCTTCCEEECCSSCCCCCGG------GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEE
T ss_pred             EECcCCCcccch--HHh--hCCCCCEEECCCCccCCChh------hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEE
Confidence            678888888887  344  78888888888888775443      3447888888888888885 4433 23 8888888


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCCCCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCG  161 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~  161 (242)
                      +++|++++ ++ .+..+++|+.|++++|++++. | .+..+++|+.|++++|.+++. +....+..+..+.+.+|+..+.
T Consensus       113 L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          113 LDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence            88888885 33 588888999999999998854 4 578888999999999988865 4434456666777777765443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.60  E-value=1.1e-15  Score=137.04  Aligned_cols=147  Identities=18%  Similarity=0.209  Sum_probs=122.3

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      .|.++|+++++|...+     ++|++|++++|.++......+.    .+++|+.|+|++|.+++..|..|..+++|++|+
T Consensus        10 c~~~~~~l~~ip~~~~-----~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   80 (549)
T 2z81_A           10 CDGRSRSFTSIPSGLT-----AAMKSLDLSFNKITYIGHGDLR----ACANLQVLILKSSRINTIEGDAFYSLGSLEHLD   80 (549)
T ss_dssp             EECTTSCCSSCCSCCC-----TTCCEEECCSSCCCEECSSTTS----SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             EECCCCccccccccCC-----CCccEEECcCCccCccChhhhh----cCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence            4788999999998653     5899999999999877654443    388999999999999988889999999999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCC-CcccccCCCcccEEecCCCccccCCCCC--CCCCCcCCccccCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQ-IPQQLGELTTLEVFDVSDNLLTGPIPRG--KQFNTFGKGSFDGNP  157 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p~~--~~~~~~~~~~~~~n~  157 (242)
                      +++|.+++..|..++.+++|++|++++|.+++. .|..+..+++|+.|++++|.+.+.+|..  ..+..+..+.+.+|.
T Consensus        81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~  159 (549)
T 2z81_A           81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS  159 (549)
T ss_dssp             CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence            999999977777799999999999999999863 5678999999999999999965566532  234455555565553

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.59  E-value=2.1e-15  Score=126.22  Aligned_cols=81  Identities=25%  Similarity=0.391  Sum_probs=32.9

Q ss_pred             hcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEe
Q 026180           50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD  129 (242)
Q Consensus        50 ~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~  129 (242)
                      +++|+.|++++|.+++. +. +..+++|++|++++|.+++. +. +..+++|+.|++++|.+++. +. +..+++|+.|+
T Consensus       106 l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~  179 (308)
T 1h6u_A          106 LQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLK  179 (308)
T ss_dssp             CTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEE
T ss_pred             CCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEE
Confidence            33444444444444422 21 34444444444444444422 11 33444444444444444422 11 34444444444


Q ss_pred             cCCCccc
Q 026180          130 VSDNLLT  136 (242)
Q Consensus       130 l~~N~l~  136 (242)
                      +++|.++
T Consensus       180 l~~n~l~  186 (308)
T 1h6u_A          180 ADDNKIS  186 (308)
T ss_dssp             CCSSCCC
T ss_pred             CCCCccC
Confidence            4444443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.59  E-value=1.4e-15  Score=119.10  Aligned_cols=124  Identities=17%  Similarity=0.171  Sum_probs=102.8

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +++++|.++.++.  +.  .+++|++|++++|.+........    ..+++|+.|++++|.+++..|..+..+++|++|+
T Consensus        71 L~l~~n~~~~~~~--l~--~l~~L~~L~l~~n~l~~~~~~~l----~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  142 (197)
T 4ezg_A           71 LTINNIHATNYNP--IS--GLSNLERLRIMGKDVTSDKIPNL----SGLTSLTLLDISHSAHDDSILTKINTLPKVNSID  142 (197)
T ss_dssp             EEEESCCCSCCGG--GT--TCTTCCEEEEECTTCBGGGSCCC----TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred             EEccCCCCCcchh--hh--cCCCCCEEEeECCccCcccChhh----cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence            6899999988863  44  78999999999998874322222    3488999999999999988899999999999999


Q ss_pred             ccCCC-CCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCcccc
Q 026180           82 LSTNS-LQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTG  137 (242)
Q Consensus        82 L~~n~-l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  137 (242)
                      +++|. ++ .+| .+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|++.+
T Consensus       143 L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          143 LSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             ccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            99998 66 555 68999999999999999995 44 68899999999999999864

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.59  E-value=9e-15  Score=112.03  Aligned_cols=108  Identities=25%  Similarity=0.279  Sum_probs=95.1

Q ss_pred             ccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCC
Q 026180           53 ITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSD  132 (242)
Q Consensus        53 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~  132 (242)
                      .+.+++++|.++ .+|..+  .+.+++|+|++|+|++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            478999999999 577655  48999999999999988899999999999999999999988777889999999999999


Q ss_pred             CccccCCCCC-CCCCCcCCccccCCCCCCCCC
Q 026180          133 NLLTGPIPRG-KQFNTFGKGSFDGNPGLCGQP  163 (242)
Q Consensus       133 N~l~~~~p~~-~~~~~~~~~~~~~n~~~c~~~  163 (242)
                      |.+++..+.. ..+..+..+.+.+|++.|+|+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            9999766543 356778888999999999885

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.59  E-value=4.3e-16  Score=144.65  Aligned_cols=116  Identities=25%  Similarity=0.357  Sum_probs=72.5

Q ss_pred             CCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCc
Q 026180           14 DPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP   93 (242)
Q Consensus        14 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~   93 (242)
                      ...|.  .+.+|+.|+|++|.+..++...+     .++.|+.|+|++|.|+ .+|..|..+++|++|+|++|.|+ .+|.
T Consensus       217 ~~~~~--~l~~L~~L~Ls~n~l~~l~~~~~-----~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~  287 (727)
T 4b8c_D          217 KDSKY--DDQLWHALDLSNLQIFNISANIF-----KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPA  287 (727)
T ss_dssp             -------CCCCCCEEECTTSCCSCCCGGGG-----GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCS
T ss_pred             hhhhc--cCCCCcEEECCCCCCCCCChhhc-----CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccCh
Confidence            44454  56667777777666654433222     3566677777777776 66666667777777777777776 5666


Q ss_pred             ccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCC
Q 026180           94 TLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPI  139 (242)
Q Consensus        94 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~  139 (242)
                      .++.+++|+.|+|++|.++ .+|..|..+++|+.|+|++|.+++.+
T Consensus       288 ~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~  332 (727)
T 4b8c_D          288 ELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQF  332 (727)
T ss_dssp             SGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHH
T ss_pred             hhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCC
Confidence            6666777777777777766 55666666777777777776666443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.58  E-value=1.3e-15  Score=127.45  Aligned_cols=142  Identities=18%  Similarity=0.230  Sum_probs=106.8

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +||++|+|+.++.  +.  .+++|++|++++|.+.....      ...+++|+.|++++|.+++..+  +..+++|++|+
T Consensus        90 L~L~~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~  157 (308)
T 1h6u_A           90 LELSGNPLKNVSA--IA--GLQSIKTLDLTSTQITDVTP------LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLS  157 (308)
T ss_dssp             EECCSCCCSCCGG--GT--TCTTCCEEECTTSCCCCCGG------GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEE
T ss_pred             EEccCCcCCCchh--hc--CCCCCCEEECCCCCCCCchh------hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEE
Confidence            4566666666542  33  56667777777766654321      3457899999999999996544  88999999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCCCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLC  160 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c  160 (242)
                      +++|.+++ ++. +..+++|+.|++++|++++..+  +..+++|+.|++++|.+++..| ...+..+..+.+.+|+..+
T Consensus       158 l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          158 IGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred             ccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeec
Confidence            99999995 444 8899999999999999986543  8889999999999999986553 3445666777788887533

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.58  E-value=2.6e-15  Score=127.18  Aligned_cols=140  Identities=19%  Similarity=0.234  Sum_probs=70.9

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +++++|++..++.  +.  .+++|+.|++++|.+.....      ...+++|+.|++++|.+++..+  +..+++|++|+
T Consensus       182 L~l~~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~------~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  249 (347)
T 4fmz_A          182 LSLNYNQIEDISP--LA--SLTSLHYFTAYVNQITDITP------VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLE  249 (347)
T ss_dssp             EECTTSCCCCCGG--GG--GCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             EEccCCccccccc--cc--CCCccceeecccCCCCCCch------hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEE
Confidence            5677777777665  33  55666666666655543221      2234555556666555553322  45555555555


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNP  157 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~  157 (242)
                      +++|.+++.  +.+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..|... .+..+..+.+.+|+
T Consensus       250 l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          250 IGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             CCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred             CCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence            555555532  2345555555555555555532  234455555555555555544333211 23334444444444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.57  E-value=9.3e-16  Score=128.81  Aligned_cols=119  Identities=18%  Similarity=0.127  Sum_probs=55.8

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +||++|+|+.+++  |.  .+++|++|++++|.+.....         .++|+.|++++|.+++..+.   .+++|++|+
T Consensus        63 L~Ls~n~l~~~~~--~~--~l~~L~~L~Ls~n~l~~l~~---------~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~  126 (317)
T 3o53_A           63 LNLSSNVLYETLD--LE--SLSTLRTLDLNNNYVQELLV---------GPSIETLHAANNNISRVSCS---RGQGKKNIY  126 (317)
T ss_dssp             EECTTSCCEEEEE--ET--TCTTCCEEECCSSEEEEEEE---------CTTCCEEECCSSCCSEEEEC---CCSSCEEEE
T ss_pred             EECCCCcCCcchh--hh--hcCCCCEEECcCCccccccC---------CCCcCEEECCCCccCCcCcc---ccCCCCEEE
Confidence            4555555554443  33  55566666666665554331         12333333333333322221   234455555


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccc-cCCCcccEEecCCCccc
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQL-GELTTLEVFDVSDNLLT  136 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~l~~L~~L~l~~N~l~  136 (242)
                      +++|++++..+..+..+++|+.|++++|.+++..|..+ ..+++|+.|++++|.++
T Consensus       127 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  182 (317)
T 3o53_A          127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (317)
T ss_dssp             CCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence            55555554444445555555555555555554433333 23445555555555544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.57  E-value=9e-16  Score=118.09  Aligned_cols=124  Identities=19%  Similarity=0.152  Sum_probs=85.0

Q ss_pred             CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180            1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL   80 (242)
Q Consensus         1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L   80 (242)
                      |+.|+.+.|.+.+.  |.  ...+|+.|++++|.+..++     .+....++|+.|++++|.+++.  ..+..+++|++|
T Consensus         1 m~~lt~~~i~~~~~--~~--~~~~L~~L~l~~n~l~~i~-----~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L   69 (176)
T 1a9n_A            1 MVKLTAELIEQAAQ--YT--NAVRDRELDLRGYKIPVIE-----NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTL   69 (176)
T ss_dssp             -CCCCHHHHHTSCE--EE--CTTSCEEEECTTSCCCSCC-----CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEE
T ss_pred             CccccHHHHHHHHh--cC--CcCCceEEEeeCCCCchhH-----HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEE
Confidence            45566666655443  33  6667888888887776442     1222344788888888888754  567778888888


Q ss_pred             eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcc--cccCCCcccEEecCCCccc
Q 026180           81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQ--QLGELTTLEVFDVSDNLLT  136 (242)
Q Consensus        81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~--~~~~l~~L~~L~l~~N~l~  136 (242)
                      ++++|.+++..+..+..+++|+.|++++|+++ .+|.  .+..+++|+.|++++|+++
T Consensus        70 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           70 LVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             ECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence            88888887554444577788888888888886 4555  6777788888888888877

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.57  E-value=8.8e-15  Score=121.54  Aligned_cols=140  Identities=24%  Similarity=0.258  Sum_probs=116.7

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +++++|.|+.++.  +.  .+++|++|++++|.+.....      ...+++|+.|++++|.+++ +| .+..+++|++|+
T Consensus        51 L~l~~~~i~~~~~--~~--~l~~L~~L~L~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~  118 (291)
T 1h6t_A           51 IIANNSDIKSVQG--IQ--YLPNVTKLFLNGNKLTDIKP------LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (291)
T ss_dssp             EECTTSCCCCCTT--GG--GCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             EEccCCCcccChh--Hh--cCCCCCEEEccCCccCCCcc------cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence            6899999999975  55  78999999999998876543      3458899999999999995 44 488999999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPG  158 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~  158 (242)
                      +++|++++.  +.+..+++|+.|++++|++++.  ..+..+++|+.|++++|.+++..| ...+..+..+.+.+|..
T Consensus       119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcC
Confidence            999999953  4688999999999999999965  568899999999999999997655 44566677777777743

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.57  E-value=5.2e-15  Score=134.59  Aligned_cols=139  Identities=20%  Similarity=0.234  Sum_probs=72.0

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      ++|++|+|+.++.  +.  .+++|+.|++++|.|...+      ....+++|+.|+|++|.+++.  ..+..+++|+.|+
T Consensus        70 L~Ls~N~l~~~~~--l~--~l~~L~~L~Ls~N~l~~l~------~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~  137 (605)
T 1m9s_A           70 LFLNGNKLTDIKP--LT--NLKNLGWLFLDENKIKDLS------SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLY  137 (605)
T ss_dssp             EECTTSCCCCCGG--GG--GCTTCCEEECCSSCCCCCT------TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEE
T ss_pred             EEeeCCCCCCChh--hc--cCCCCCEEECcCCCCCCCh------hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEE
Confidence            3444444444443  22  4445555555544443321      112245555555555555532  2355556666666


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNP  157 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~  157 (242)
                      |++|.+++.  ..+..+++|+.|+|++|++++..|  +..+++|+.|+|++|.+++. |....+..+..+.+.+|+
T Consensus       138 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          138 LGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             CCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEE
T ss_pred             CCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCc
Confidence            666666533  445566666666666666665444  56666666666666666642 333334444555555543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.57  E-value=4.9e-16  Score=119.57  Aligned_cols=124  Identities=19%  Similarity=0.214  Sum_probs=103.0

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      ++|++|+|+.++.  +. ...++|++|++++|.|....  .+    ..+++|+.|+|++|.|++..+..|..+++|++|+
T Consensus        24 L~l~~n~l~~i~~--~~-~~~~~L~~L~Ls~N~l~~~~--~l----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           24 LDLRGYKIPVIEN--LG-ATLDQFDAIDFSDNEIRKLD--GF----PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             EECTTSCCCSCCC--GG-GGTTCCSEEECCSSCCCEEC--CC----CCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             EEeeCCCCchhHH--hh-hcCCCCCEEECCCCCCCccc--cc----ccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            6899999999864  33 13449999999999988762  22    2378999999999999966556668999999999


Q ss_pred             ccCCCCCCCCCc--ccCCCCCCCEEeCCCCCCCCCCccc----ccCCCcccEEecCCCccc
Q 026180           82 LSTNSLQGHIPP--TLGNLIVLESLDLSNNKLSGQIPQQ----LGELTTLEVFDVSDNLLT  136 (242)
Q Consensus        82 L~~n~l~~~~p~--~~~~l~~L~~L~l~~N~l~~~~p~~----~~~l~~L~~L~l~~N~l~  136 (242)
                      +++|.++ .+|.  .+..+++|+.|++++|.++ ..|..    +..+++|+.|++++|...
T Consensus        95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            9999997 5665  7889999999999999998 55664    889999999999999875

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.56  E-value=2.5e-14  Score=110.05  Aligned_cols=107  Identities=22%  Similarity=0.294  Sum_probs=93.5

Q ss_pred             cEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCC
Q 026180           54 TAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDN  133 (242)
Q Consensus        54 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N  133 (242)
                      +.+++++|+++ .+|..+.  +.|+.|+|++|+|++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            78999999998 6777654  89999999999999888999999999999999999999776667899999999999999


Q ss_pred             ccccCCCCC-CCCCCcCCccccCCCCCCCCC
Q 026180          134 LLTGPIPRG-KQFNTFGKGSFDGNPGLCGQP  163 (242)
Q Consensus       134 ~l~~~~p~~-~~~~~~~~~~~~~n~~~c~~~  163 (242)
                      .+++..+.. ..+..+..+.+.+|++.|.|.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            999655542 346778888999999999875

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.56  E-value=3.4e-15  Score=136.69  Aligned_cols=144  Identities=17%  Similarity=0.248  Sum_probs=88.5

Q ss_pred             CCCCcccCCCCCCCCCCCCCcccceeeeEEEe------------------ecCCchhhHHHhhcCccEEEccCCCCccCc
Q 026180            6 ANNLTYLQDPLLGPVRYPALTYYGFSYYSLTL------------------SNKGTELEYEKLSNLITAIILSNNSFVGEI   67 (242)
Q Consensus         6 ~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~------------------~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~   67 (242)
                      +|+++.||.. |.  .+++|++|++++|.+..                  ++....   +..+++|+.|+|++|.+.+.+
T Consensus       192 ~n~l~~ip~~-l~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~---~~~l~~L~~L~L~~n~l~~~~  265 (636)
T 4eco_A          192 SNNITFVSKA-VM--RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK---WDNLKDLTDVEVYNCPNLTKL  265 (636)
T ss_dssp             SCEEEEECGG-GG--GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC---GGGCTTCCEEEEECCTTCSSC
T ss_pred             cCCCccCCHH-Hh--cccCCCEEECcCCccccccccccccccccchhcccCchhhh---hcccCCCCEEEecCCcCCccC
Confidence            3445555542 33  56666666666666554                  111111   013566666666666666666


Q ss_pred             chhccCCCCCCEEeccCCC-CCC-CCCcccCCC------CCCCEEeCCCCCCCCCCcc--cccCCCcccEEecCCCcccc
Q 026180           68 PTSIANLKGLRTLNLSTNS-LQG-HIPPTLGNL------IVLESLDLSNNKLSGQIPQ--QLGELTTLEVFDVSDNLLTG  137 (242)
Q Consensus        68 p~~~~~l~~L~~L~L~~n~-l~~-~~p~~~~~l------~~L~~L~l~~N~l~~~~p~--~~~~l~~L~~L~l~~N~l~~  137 (242)
                      |..+..+++|++|++++|+ +++ .+|..++.+      ++|+.|++++|+++ .+|.  .+..+++|+.|++++|.++|
T Consensus       266 p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g  344 (636)
T 4eco_A          266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEG  344 (636)
T ss_dssp             CTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEE
T ss_pred             hHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCcc
Confidence            6666666667777777666 665 566655554      66777777777776 6666  67777778888888888777


Q ss_pred             CCCCCCCCCCcCCccccCC
Q 026180          138 PIPRGKQFNTFGKGSFDGN  156 (242)
Q Consensus       138 ~~p~~~~~~~~~~~~~~~n  156 (242)
                      .+|....+..+..+.+.+|
T Consensus       345 ~ip~~~~l~~L~~L~L~~N  363 (636)
T 4eco_A          345 KLPAFGSEIKLASLNLAYN  363 (636)
T ss_dssp             ECCCCEEEEEESEEECCSS
T ss_pred             chhhhCCCCCCCEEECCCC
Confidence            7773333445555556555

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.55  E-value=7.1e-15  Score=112.00  Aligned_cols=130  Identities=18%  Similarity=0.091  Sum_probs=104.9

Q ss_pred             CCCCCcccceeeeEEE--eecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCC
Q 026180           21 RYPALTYYGFSYYSLT--LSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNL   98 (242)
Q Consensus        21 ~~~~L~~L~l~~n~l~--~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l   98 (242)
                      ..++|+.|++++|.+.  .++..     ...+++|+.|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~-----~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l   94 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGL-----TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKL   94 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSC-----CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred             CcccCCEEECCCCCCChhhHHHH-----HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhC
Confidence            4578999999999887  44332     23478999999999999965  778999999999999999997788888889


Q ss_pred             CCCCEEeCCCCCCCCCC-cccccCCCcccEEecCCCccccCCC----CCCCCCCcCCccccCCC
Q 026180           99 IVLESLDLSNNKLSGQI-PQQLGELTTLEVFDVSDNLLTGPIP----RGKQFNTFGKGSFDGNP  157 (242)
Q Consensus        99 ~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~~p----~~~~~~~~~~~~~~~n~  157 (242)
                      ++|+.|++++|.+++.. +..+..+++|+.|++++|.+++..+    ....+..+..+.+.+|.
T Consensus        95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            99999999999999642 2688999999999999999996544    12345556666666664

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.53  E-value=1.1e-14  Score=119.25  Aligned_cols=121  Identities=24%  Similarity=0.291  Sum_probs=104.9

Q ss_pred             CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180            1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL   80 (242)
Q Consensus         1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L   80 (242)
                      .++|++|+|+.++.  +.  .+++|++|++++|.+...+...       ..+|+.|+|++|.+++. + .+..+++|+.|
T Consensus        67 ~L~L~~N~i~~~~~--l~--~l~~L~~L~L~~N~l~~l~~~~-------~~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L  133 (263)
T 1xeu_A           67 ELHLSHNQISDLSP--LK--DLTKLEELSVNRNRLKNLNGIP-------SACLSRLFLDNNELRDT-D-SLIHLKNLEIL  133 (263)
T ss_dssp             EEECCSSCCCCCGG--GT--TCSSCCEEECCSSCCSCCTTCC-------CSSCCEEECCSSCCSBS-G-GGTTCTTCCEE
T ss_pred             EEECCCCccCCChh--hc--cCCCCCEEECCCCccCCcCccc-------cCcccEEEccCCccCCC-h-hhcCcccccEE
Confidence            37899999999998  66  8999999999999887654321       17899999999999964 4 58899999999


Q ss_pred             eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccC
Q 026180           81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGP  138 (242)
Q Consensus        81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~  138 (242)
                      ++++|++++. + .+..+++|+.|++++|++++.  ..+..+++|+.|++++|.+++.
T Consensus       134 ~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          134 SIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             ECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            9999999954 4 688999999999999999966  6688999999999999999855

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.53  E-value=5.5e-15  Score=139.27  Aligned_cols=147  Identities=16%  Similarity=0.230  Sum_probs=99.6

Q ss_pred             CcccCCCCCcc------------------cCCCC-CCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCC
Q 026180            1 MKDVNANNLTY------------------LQDPL-LGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNN   61 (242)
Q Consensus         1 ~~dLs~N~i~~------------------l~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n   61 (242)
                      ++||++|+|+.                  +|... |.  .+++|++|++++|.+...    .+.....+++|+.|+|++|
T Consensus       452 ~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~--~L~~L~~L~Ls~N~l~~~----iP~~l~~L~~L~~L~Ls~N  525 (876)
T 4ecn_A          452 IIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS--NLKDLTDVELYNCPNMTQ----LPDFLYDLPELQSLNIACN  525 (876)
T ss_dssp             EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGG--GCTTCCEEEEESCTTCCS----CCGGGGGCSSCCEEECTTC
T ss_pred             EEECcCCcCCCCcccccccccccccccccCChhhhhc--cCCCCCEEECcCCCCCcc----ChHHHhCCCCCCEEECcCC
Confidence            36889999988                  88776 44  688899999988764321    1122344677777777777


Q ss_pred             C-Ccc-CcchhccCCC-------CCCEEeccCCCCCCCCCc--ccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEec
Q 026180           62 S-FVG-EIPTSIANLK-------GLRTLNLSTNSLQGHIPP--TLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDV  130 (242)
Q Consensus        62 ~-i~~-~~p~~~~~l~-------~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l  130 (242)
                      + +++ .+|..++.++       +|+.|++++|+++ .+|.  .+..+++|+.|++++|+++ .+| .+..+++|+.|++
T Consensus       526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~L  602 (876)
T 4ecn_A          526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKL  602 (876)
T ss_dssp             TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEEC
T ss_pred             CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEEC
Confidence            6 776 6666555444       7777777777777 6666  6777777777777777777 666 6777777777777


Q ss_pred             CCCccccCCCCCC-CCCC-cCCccccCCC
Q 026180          131 SDNLLTGPIPRGK-QFNT-FGKGSFDGNP  157 (242)
Q Consensus       131 ~~N~l~~~~p~~~-~~~~-~~~~~~~~n~  157 (242)
                      ++|.++ .+|... .+.. +..+.+.+|.
T Consensus       603 s~N~l~-~lp~~l~~l~~~L~~L~Ls~N~  630 (876)
T 4ecn_A          603 DYNQIE-EIPEDFCAFTDQVEGLGFSHNK  630 (876)
T ss_dssp             CSSCCS-CCCTTSCEECTTCCEEECCSSC
T ss_pred             cCCccc-cchHHHhhccccCCEEECcCCC
Confidence            777777 555432 2333 5555555554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.52  E-value=3e-14  Score=129.57  Aligned_cols=140  Identities=24%  Similarity=0.284  Sum_probs=117.7

Q ss_pred             CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180            1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL   80 (242)
Q Consensus         1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L   80 (242)
                      .++|++|.|..++.  +.  .+++|+.|++++|.|.....      ...+++|+.|+|++|.+++ +| .+..+++|+.|
T Consensus        47 ~L~l~~n~i~~l~~--l~--~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L  114 (605)
T 1m9s_A           47 QIIANNSDIKSVQG--IQ--YLPNVTKLFLNGNKLTDIKP------LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL  114 (605)
T ss_dssp             CCBCTTCCCCCCTT--GG--GCTTCCEEECTTSCCCCCGG------GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred             EEECcCCCCCCChH--Hc--cCCCCCEEEeeCCCCCCChh------hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence            37899999999984  55  88999999999998876543      3458999999999999995 34 68899999999


Q ss_pred             eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCC
Q 026180           81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNP  157 (242)
Q Consensus        81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~  157 (242)
                      +|++|.+++ + +.+..+++|+.|+|++|++++.  ..+..+++|+.|+|++|.+++..| ...+..+..+.+.+|.
T Consensus       115 ~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          115 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             ECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred             EecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC
Confidence            999999995 3 4588999999999999999965  578999999999999999997766 4456667777777774

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.51  E-value=2.8e-14  Score=125.81  Aligned_cols=140  Identities=22%  Similarity=0.265  Sum_probs=76.8

Q ss_pred             ccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEec
Q 026180            3 DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNL   82 (242)
Q Consensus         3 dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L   82 (242)
                      ||++|+++.++.  +.  .+++|+.|++++|.+.....      ...+++|+.|++++|.+++..+  +..+++|+.|++
T Consensus       249 ~l~~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L  316 (466)
T 1o6v_A          249 DLANNQISNLAP--LS--GLTKLTELKLGANQISNISP------LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTL  316 (466)
T ss_dssp             ECCSSCCCCCGG--GT--TCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEEC
T ss_pred             ECCCCccccchh--hh--cCCCCCEEECCCCccCcccc------ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEEC
Confidence            444444444443  22  44455555555554443221      2235556666666666654333  455666666666


Q ss_pred             cCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCCCC
Q 026180           83 STNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGL  159 (242)
Q Consensus        83 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~  159 (242)
                      ++|++++..|  +..+++|+.|++++|.+++.  ..+..+++|+.|++++|++++..| ...+..+..+.+.+|++.
T Consensus       317 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             CSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEE
T ss_pred             cCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCccc
Confidence            6666664433  45666666666666666643  346666777777777777766555 334455555556666543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.51  E-value=1.7e-14  Score=130.40  Aligned_cols=122  Identities=24%  Similarity=0.261  Sum_probs=102.5

Q ss_pred             cCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEecc
Q 026180            4 VNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLS   83 (242)
Q Consensus         4 Ls~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~   83 (242)
                      +++|.|+.++..        .|+.|++++|.|+.++.      ...+++|+.|+|++|.|+ .+|..++.+++|+.|+|+
T Consensus       430 l~~n~i~~l~~~--------~L~~L~Ls~n~l~~lp~------~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls  494 (567)
T 1dce_A          430 LLENSVLKMEYA--------DVRVLHLAHKDLTVLCH------LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQAS  494 (567)
T ss_dssp             HHHHHHHHHHHT--------TCSEEECTTSCCSSCCC------GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECC
T ss_pred             hhcccccccCcc--------CceEEEecCCCCCCCcC------ccccccCcEeecCccccc-ccchhhhcCCCCCEEECC
Confidence            344555555432        48889999998876542      345889999999999999 789999999999999999


Q ss_pred             CCCCCCCCCcccCCCCCCCEEeCCCCCCCCCC-cccccCCCcccEEecCCCccccCCCCC
Q 026180           84 TNSLQGHIPPTLGNLIVLESLDLSNNKLSGQI-PQQLGELTTLEVFDVSDNLLTGPIPRG  142 (242)
Q Consensus        84 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~~p~~  142 (242)
                      +|.+++ +| .++.+++|+.|+|++|++++.. |..+..+++|+.|++++|++++..|..
T Consensus       495 ~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          495 DNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             SSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             CCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence            999995 66 7999999999999999999876 999999999999999999999776643

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.50  E-value=2e-14  Score=121.76  Aligned_cols=142  Identities=21%  Similarity=0.239  Sum_probs=120.4

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +++++|++..++.  +.  .+++|++|++++|.+.....      ...+++|+.|++++|.+++.  +.+..+++|++|+
T Consensus       204 L~l~~n~l~~~~~--~~--~~~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~  271 (347)
T 4fmz_A          204 FTAYVNQITDITP--VA--NMTRLNSLKIGNNKITDLSP------LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLN  271 (347)
T ss_dssp             EECCSSCCCCCGG--GG--GCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred             eecccCCCCCCch--hh--cCCcCCEEEccCCccCCCcc------hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEE
Confidence            6889999999887  55  88999999999998875443      34588999999999999954  4688999999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPG  158 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~  158 (242)
                      +++|.+++.  +.+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..| ...+..+..+++.+|+.
T Consensus       272 l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          272 VGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI  345 (347)
T ss_dssp             CCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred             ccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence            999999954  458899999999999999998888999999999999999999997766 44567778888888863

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.50  E-value=8.6e-15  Score=109.36  Aligned_cols=122  Identities=23%  Similarity=0.216  Sum_probs=99.6

Q ss_pred             cccCCCCCc--ccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCE
Q 026180            2 KDVNANNLT--YLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRT   79 (242)
Q Consensus         2 ~dLs~N~i~--~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~   79 (242)
                      +++++|+|+  .+|. .+.  .+++|++|++++|.+...  .    ....+++|+.|++++|.+++.+|..+..+++|++
T Consensus        22 L~l~~n~l~~~~~~~-~~~--~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           22 LVLDNSRSNEGKLEG-LTD--EFEELEFLSTINVGLTSI--A----NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             EECTTCBCBTTBCCS-CCT--TCTTCCEEECTTSCCCCC--T----TCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             EEccCCcCChhHHHH-HHh--hcCCCcEEECcCCCCCCc--h----hhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            688999998  7775 555  788999999999988765  1    1233788999999999999778888888999999


Q ss_pred             EeccCCCCCCC-CCcccCCCCCCCEEeCCCCCCCCCCc---ccccCCCcccEEecCC
Q 026180           80 LNLSTNSLQGH-IPPTLGNLIVLESLDLSNNKLSGQIP---QQLGELTTLEVFDVSD  132 (242)
Q Consensus        80 L~L~~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p---~~~~~l~~L~~L~l~~  132 (242)
                      |++++|.+++. .+..+..+++|+.|++++|.+++..+   ..+..+++|+.|++++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999999853 34778899999999999999986655   4788899999998763

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.50  E-value=6.8e-14  Score=118.61  Aligned_cols=90  Identities=21%  Similarity=0.199  Sum_probs=69.8

Q ss_pred             hcCccEEEccC-CCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEE
Q 026180           50 SNLITAIILSN-NSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVF  128 (242)
Q Consensus        50 ~~~L~~L~Ls~-n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L  128 (242)
                      +.+|+.|+|++ |.|++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..+..++ |+.|
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l  108 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL  108 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred             CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence            56688888885 888877777788888888888888888877777788888888888888888866555565555 8888


Q ss_pred             ecCCCccccCCC
Q 026180          129 DVSDNLLTGPIP  140 (242)
Q Consensus       129 ~l~~N~l~~~~p  140 (242)
                      +|.+|++.+.+.
T Consensus       109 ~l~~N~~~c~c~  120 (347)
T 2ifg_A          109 VLSGNPLHCSCA  120 (347)
T ss_dssp             ECCSSCCCCCGG
T ss_pred             EeeCCCccCCCc
Confidence            888888876543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.49  E-value=6.2e-14  Score=130.18  Aligned_cols=146  Identities=29%  Similarity=0.342  Sum_probs=95.2

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeec-----CCchhhHHHhhcCccEEEccCCCCccCcchhccCCCC
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSN-----KGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKG   76 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~-----~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~   76 (242)
                      ++|.+|.+..++...+        +.++|+.|.|....     .......+..+..|+.|+|++|.+. .+|..+..+++
T Consensus       178 l~L~~n~~~~~~~~~l--------~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~  248 (727)
T 4b8c_D          178 IELFANGKDEANQALL--------QHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF  248 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred             EEeeCCCCCcchhhHh--------hcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence            4667777777665543        33334443333221     1122233445789999999999999 77777789999


Q ss_pred             CCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC-CCCCCcCCccccC
Q 026180           77 LRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG-KQFNTFGKGSFDG  155 (242)
Q Consensus        77 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~  155 (242)
                      |++|+|++|.|+ .+|..+..+++|+.|+|++|.|+ .+|..|..+++|++|+|++|.++ .+|.. ..+..+..+.+.+
T Consensus       249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG  325 (727)
T ss_dssp             CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred             CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence            999999999999 89999999999999999999999 77999999999999999999998 66765 3456777788888


Q ss_pred             CCCC
Q 026180          156 NPGL  159 (242)
Q Consensus       156 n~~~  159 (242)
                      |+..
T Consensus       326 N~l~  329 (727)
T 4b8c_D          326 NPLE  329 (727)
T ss_dssp             SCCC
T ss_pred             CccC
Confidence            8654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.47  E-value=1.9e-13  Score=115.89  Aligned_cols=103  Identities=21%  Similarity=0.106  Sum_probs=79.1

Q ss_pred             cccCCC-CCcccCCCCCCCCCCCCCcccceee-eEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCE
Q 026180            2 KDVNAN-NLTYLQDPLLGPVRYPALTYYGFSY-YSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRT   79 (242)
Q Consensus         2 ~dLs~N-~i~~l~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~   79 (242)
                      +|++++ +|+.||.  +.  .+.+|+.|+|++ |.|..+....+.    .+++|+.|+|++|+|++..|..|..+++|+.
T Consensus        13 v~~~~~n~l~~ip~--l~--~~~~L~~L~l~~~n~l~~~~~~~~~----~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~   84 (347)
T 2ifg_A           13 LRCTRDGALDSLHH--LP--GAENLTELYIENQQHLQHLELRDLR----GLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (347)
T ss_dssp             EECCSSCCCTTTTT--SC--SCSCCSEEECCSCSSCCEECGGGSC----SCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             EEcCCCCCCCccCC--CC--CCCCeeEEEccCCCCCCCcChhHhc----cccCCCEEECCCCccceeCHHHhcCCcCCCE
Confidence            567777 8888887  55  677888888885 888776644433    3788888888888888888888888888888


Q ss_pred             EeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCC
Q 026180           80 LNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSG  113 (242)
Q Consensus        80 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~  113 (242)
                      |+|++|+|++..+..|..+. |+.|+|.+|.+..
T Consensus        85 L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           85 LNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             EECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             EeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            88888888865555565555 8888888888873

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.46  E-value=8.5e-14  Score=125.67  Aligned_cols=30  Identities=20%  Similarity=0.200  Sum_probs=15.8

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTL   37 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~   37 (242)
                      +||++|+|+.|| .     .+++|++|++++|.|+.
T Consensus        85 L~Ls~N~l~~ip-~-----~l~~L~~L~Ls~N~l~~  114 (571)
T 3cvr_A           85 LEITQNALISLP-E-----LPASLEYLDACDNRLST  114 (571)
T ss_dssp             EECCSSCCSCCC-C-----CCTTCCEEECCSSCCSC
T ss_pred             EECcCCCCcccc-c-----ccCCCCEEEccCCCCCC
Confidence            455666666555 1     23455555555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.46  E-value=1.3e-13  Score=124.61  Aligned_cols=133  Identities=20%  Similarity=0.204  Sum_probs=100.2

Q ss_pred             CCCCCcccc-eeeeEEEeecCCchh--hHHH-hhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccC
Q 026180           21 RYPALTYYG-FSYYSLTLSNKGTEL--EYEK-LSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLG   96 (242)
Q Consensus        21 ~~~~L~~L~-l~~n~l~~~~~~~~~--~~~~-~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~   96 (242)
                      .+++|+.|+ ++.|.+.........  .... ....|+.|+|++|.|++ +|. ++.+++|+.|+|++|.++ .+|..++
T Consensus       407 ~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~  483 (567)
T 1dce_A          407 YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA  483 (567)
T ss_dssp             HHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred             HHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh
Confidence            566777777 555533211110000  0000 13468999999999995 676 899999999999999999 8899999


Q ss_pred             CCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCC-CCCC-CCCCcCCccccCCCC
Q 026180           97 NLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPI-PRGK-QFNTFGKGSFDGNPG  158 (242)
Q Consensus        97 ~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~-~~~~~~~~~~~~n~~  158 (242)
                      .+++|+.|+|++|++++ +| .+..+++|+.|++++|.+++.. |... .+..+..+.+.+|+.
T Consensus       484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l  545 (567)
T 1dce_A          484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL  545 (567)
T ss_dssp             GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence            99999999999999996 67 7899999999999999999875 6543 466777888888864

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.45  E-value=8.5e-14  Score=118.42  Aligned_cols=85  Identities=14%  Similarity=0.097  Sum_probs=57.1

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEE-EeecCCchhhHHHhhcCcc-EEEccCCCCccCcchhccCCCCCCE
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSL-TLSNKGTELEYEKLSNLIT-AIILSNNSFVGEIPTSIANLKGLRT   79 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~~~L~-~L~Ls~n~i~~~~p~~~~~l~~L~~   79 (242)
                      +||++|+|+.||..+|.  .+++|++|++++|.+ +.++.+.+..    ++++. .+++++|+++...|..|..+++|++
T Consensus        35 L~Ls~N~i~~i~~~~f~--~l~~L~~L~Ls~N~i~~~i~~~~f~~----L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~  108 (350)
T 4ay9_X           35 LRFVLTKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEADVFSN----LPKLHEIRIEKANNLLYINPEAFQNLPNLQY  108 (350)
T ss_dssp             EEEESCCCSEECTTSST--TCTTCCEEEEECCTTCCEECTTSBCS----CTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred             EEccCCcCCCcCHHHHc--CCCCCCEEECcCCCCCCccChhHhhc----chhhhhhhcccCCcccccCchhhhhcccccc
Confidence            57778888888877777  777888888887765 4444444322    44444 3556667777666777777777777


Q ss_pred             EeccCCCCCCCCC
Q 026180           80 LNLSTNSLQGHIP   92 (242)
Q Consensus        80 L~L~~n~l~~~~p   92 (242)
                      |++++|++....+
T Consensus       109 L~l~~n~l~~~~~  121 (350)
T 4ay9_X          109 LLISNTGIKHLPD  121 (350)
T ss_dssp             EEEEEECCSSCCC
T ss_pred             ccccccccccCCc
Confidence            7777777764443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.45  E-value=5.3e-14  Score=127.01  Aligned_cols=89  Identities=30%  Similarity=0.363  Sum_probs=45.5

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +||++|+|+.||.  |.  .  +|++|++++|.|..++.        .+++|+.|+|++|.|++ +|.   .+++|++|+
T Consensus       105 L~Ls~N~l~~ip~--l~--~--~L~~L~Ls~N~l~~lp~--------~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~  166 (571)
T 3cvr_A          105 LDACDNRLSTLPE--LP--A--SLKHLDVDNNQLTMLPE--------LPALLEYINADNNQLTM-LPE---LPTSLEVLS  166 (571)
T ss_dssp             EECCSSCCSCCCC--CC--T--TCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred             EEccCCCCCCcch--hh--c--CCCEEECCCCcCCCCCC--------cCccccEEeCCCCccCc-CCC---cCCCcCEEE
Confidence            5666777766665  32  1  56666666665554322        24455555555555553 333   344555555


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLS  112 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  112 (242)
                      +++|.+++ +|. +.  ++|+.|++++|+|+
T Consensus       167 Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          167 VRNNQLTF-LPE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             CCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred             CCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence            55555553 333 33  44555555555544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.45  E-value=1.8e-13  Score=120.60  Aligned_cols=83  Identities=27%  Similarity=0.400  Sum_probs=41.6

Q ss_pred             hcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEe
Q 026180           50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD  129 (242)
Q Consensus        50 ~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~  129 (242)
                      +++|+.|++++|.+++..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|++++..|  +..+++|+.|+
T Consensus       242 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  315 (466)
T 1o6v_A          242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT  315 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEE
T ss_pred             CCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEE
Confidence            4455555555555553332  4455555555555555553222  4455555555555555553322  44555555555


Q ss_pred             cCCCccccC
Q 026180          130 VSDNLLTGP  138 (242)
Q Consensus       130 l~~N~l~~~  138 (242)
                      +++|.+++.
T Consensus       316 L~~n~l~~~  324 (466)
T 1o6v_A          316 LYFNNISDI  324 (466)
T ss_dssp             CCSSCCSCC
T ss_pred             CcCCcCCCc
Confidence            555555543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.42  E-value=6e-13  Score=117.24  Aligned_cols=113  Identities=19%  Similarity=0.188  Sum_probs=78.5

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +||++|+|+.+|  .+.  .+++|++|++++|.++..+       ...+++|+.|++++|.+++. +  ++.+++|++|+
T Consensus        47 L~Ls~n~l~~~~--~l~--~l~~L~~L~Ls~n~l~~~~-------~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~  112 (457)
T 3bz5_A           47 LDCHNSSITDMT--GIE--KLTGLTKLICTSNNITTLD-------LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN  112 (457)
T ss_dssp             EECCSSCCCCCT--TGG--GCTTCSEEECCSSCCSCCC-------CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred             EEccCCCcccCh--hhc--ccCCCCEEEccCCcCCeEc-------cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence            678888888876  355  7788888888888776542       23467788888888888754 3  67778888888


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCc
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNL  134 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~  134 (242)
                      +++|++++ +|  +..+++|+.|++++|++++. +  +..+++|+.|++++|.
T Consensus       113 L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~  159 (457)
T 3bz5_A          113 CDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNK  159 (457)
T ss_dssp             CCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCS
T ss_pred             CCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCC
Confidence            88888775 33  67777777777777777753 2  4455555555555553

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.40  E-value=1.2e-12  Score=115.30  Aligned_cols=60  Identities=42%  Similarity=0.413  Sum_probs=28.3

Q ss_pred             cCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCcccc
Q 026180           72 ANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTG  137 (242)
Q Consensus        72 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  137 (242)
                      ..+++|+.|++++|.+++.   .+..+++|+.|++++|++++ +|  +..+++|+.|++++|++++
T Consensus       188 ~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          188 SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred             ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence            3344444444444444422   14444555555555555553 33  4455555555555555554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.39  E-value=1.5e-12  Score=114.65  Aligned_cols=116  Identities=28%  Similarity=0.349  Sum_probs=78.4

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +||++|+|+.+|.  |.  .+++|++|++++|.+..++.        .+.+|+.|++++|.+++ +| .+..+++|++|+
T Consensus       136 L~L~~n~l~~lp~--~~--~l~~L~~L~l~~N~l~~lp~--------~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~  201 (454)
T 1jl5_A          136 LGVSNNQLEKLPE--LQ--NSSFLKIIDVDNNSLKKLPD--------LPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY  201 (454)
T ss_dssp             EECCSSCCSSCCC--CT--TCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred             EECcCCCCCCCcc--cC--CCCCCCEEECCCCcCcccCC--------CcccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence            5677777777772  55  77788888888777664322        13477888888888775 45 477777888888


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCcccc
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTG  137 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  137 (242)
                      +++|++++ +|...   ++|+.|++++|.++ .+|. +..+++|+.|++++|++++
T Consensus       202 l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          202 ADNNSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             CCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS
T ss_pred             CCCCcCCc-CCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc
Confidence            87777774 44322   46667777777766 4553 6667777777777777764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.38  E-value=1.8e-12  Score=114.17  Aligned_cols=114  Identities=25%  Similarity=0.312  Sum_probs=73.9

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +||++|+++.+|.      .+.+|++|++++|.+...+.        .+++|+.|++++|.+++ +| .|..+++|++|+
T Consensus        96 L~l~~n~l~~lp~------~~~~L~~L~l~~n~l~~l~~--------~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~  159 (454)
T 1jl5_A           96 LVASCNSLTELPE------LPQSLKSLLVDNNNLKALSD--------LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIID  159 (454)
T ss_dssp             EECCSSCCSSCCC------CCTTCCEEECCSSCCSCCCS--------CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred             EEccCCcCCcccc------ccCCCcEEECCCCccCcccC--------CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEE
Confidence            4555555555553      22456666666665543221        13577888888888875 56 477888888888


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCcccc
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTG  137 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  137 (242)
                      +++|++++ +|..+   .+|+.|++++|.+++ +| .+..+++|+.|++++|.+++
T Consensus       160 l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~  209 (454)
T 1jl5_A          160 VDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK  209 (454)
T ss_dssp             CCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred             CCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence            88888774 55433   477777777777775 45 46777777777777777764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.34  E-value=3.9e-15  Score=116.68  Aligned_cols=115  Identities=21%  Similarity=0.170  Sum_probs=95.1

Q ss_pred             CCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCccc
Q 026180           16 LLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTL   95 (242)
Q Consensus        16 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~   95 (242)
                      .|.  .+++|++|++++|.+..++      ....+++|+.|++++|.++ .+|..+..+++|++|++++|++++ +| .+
T Consensus        43 ~~~--~l~~L~~L~ls~n~l~~l~------~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~  111 (198)
T 1ds9_A           43 TLS--TLKACKHLALSTNNIEKIS------SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GI  111 (198)
T ss_dssp             HHH--HTTTCSEEECSEEEESCCC------CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HH
T ss_pred             HHh--cCCCCCEEECCCCCCcccc------ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-cc
Confidence            455  7889999999999887643      2245889999999999999 678888888999999999999985 45 58


Q ss_pred             CCCCCCCEEeCCCCCCCCCCc-ccccCCCcccEEecCCCccccCCCC
Q 026180           96 GNLIVLESLDLSNNKLSGQIP-QQLGELTTLEVFDVSDNLLTGPIPR  141 (242)
Q Consensus        96 ~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~  141 (242)
                      ..+++|+.|++++|++++..+ ..+..+++|+.|++++|++++.+|.
T Consensus       112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            888999999999999985432 4688899999999999999877665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.33  E-value=2.2e-14  Score=122.59  Aligned_cols=135  Identities=20%  Similarity=0.249  Sum_probs=74.1

Q ss_pred             cccCCCCCcccCC----CCCCCCCCC-CCcccceeeeEEEeecCCchhhHHHh-hcCccEEEccCCCCccCcchhcc---
Q 026180            2 KDVNANNLTYLQD----PLLGPVRYP-ALTYYGFSYYSLTLSNKGTELEYEKL-SNLITAIILSNNSFVGEIPTSIA---   72 (242)
Q Consensus         2 ~dLs~N~i~~l~~----~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~-~~~L~~L~Ls~n~i~~~~p~~~~---   72 (242)
                      +||++|+|+.++.    ..|.  .++ +|++|++++|.|.............. .++|+.|+|++|.+++..+..+.   
T Consensus        27 L~Ls~n~l~~~~~~~l~~~l~--~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l  104 (362)
T 3goz_A           27 LDLSLNNLYSISTVELIQAFA--NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTL  104 (362)
T ss_dssp             EECTTSCGGGSCHHHHHHHHH--TCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred             EEccCCCCChHHHHHHHHHHH--hCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHH
Confidence            5777777777775    4555  566 77777777776553321111111111 26677777777777655555333   


Q ss_pred             -CC-CCCCEEeccCCCCCCCCCccc----CC-CCCCCEEeCCCCCCCCCCc----ccccCCC-cccEEecCCCccccC
Q 026180           73 -NL-KGLRTLNLSTNSLQGHIPPTL----GN-LIVLESLDLSNNKLSGQIP----QQLGELT-TLEVFDVSDNLLTGP  138 (242)
Q Consensus        73 -~l-~~L~~L~L~~n~l~~~~p~~~----~~-l~~L~~L~l~~N~l~~~~p----~~~~~l~-~L~~L~l~~N~l~~~  138 (242)
                       .+ ++|++|++++|.+++..+..+    .. ..+|+.|++++|.++...+    ..+..++ +|+.|++++|.+++.
T Consensus       105 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~  182 (362)
T 3goz_A          105 AAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK  182 (362)
T ss_dssp             HTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred             HhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence             33 667777777777665444332    22 2466666666666653222    2223333 566666666655543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.33  E-value=1.8e-12  Score=118.18  Aligned_cols=110  Identities=22%  Similarity=0.229  Sum_probs=52.5

Q ss_pred             CCCCcccceeeeEEEeecCCchh------------hHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCC
Q 026180           22 YPALTYYGFSYYSLTLSNKGTEL------------EYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQG   89 (242)
Q Consensus        22 ~~~L~~L~l~~n~l~~~~~~~~~------------~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~   89 (242)
                      +++|+.|++++|.|..++.....            .+...+++|+.|+|++|.|++ +|   ..+++|+.|++++|.|+ 
T Consensus       180 ~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-  254 (622)
T 3g06_A          180 PSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-  254 (622)
T ss_dssp             CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-
T ss_pred             CCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-
Confidence            46777777777776643321000            000012344445555554442 23   23344555555555555 


Q ss_pred             CCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCC
Q 026180           90 HIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP  140 (242)
Q Consensus        90 ~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  140 (242)
                      .+|.   .+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..|
T Consensus       255 ~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~  301 (622)
T 3g06_A          255 SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL  301 (622)
T ss_dssp             CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred             cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence            3333   3345555555555555 445555555555555555555554433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.33  E-value=2.3e-14  Score=123.36  Aligned_cols=16  Identities=19%  Similarity=0.233  Sum_probs=7.5

Q ss_pred             CCCCCcccceeeeEEE
Q 026180           21 RYPALTYYGFSYYSLT   36 (242)
Q Consensus        21 ~~~~L~~L~l~~n~l~   36 (242)
                      .+++|++|++++|.+.
T Consensus        92 ~~~~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           92 KCPKLHTVRLSDNAFG  107 (386)
T ss_dssp             TCTTCCEEECCSCCCC
T ss_pred             hCCcccEEECCCCcCC
Confidence            3444555555544433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.32  E-value=9.9e-15  Score=125.61  Aligned_cols=32  Identities=19%  Similarity=0.166  Sum_probs=17.7

Q ss_pred             cccCCCCCcc-----cCCCCCCCCCCCCCcccceeeeEEE
Q 026180            2 KDVNANNLTY-----LQDPLLGPVRYPALTYYGFSYYSLT   36 (242)
Q Consensus         2 ~dLs~N~i~~-----l~~~~~~~~~~~~L~~L~l~~n~l~   36 (242)
                      +||++|+|..     ++. .+.  .+++|++|++++|.+.
T Consensus        99 L~Ls~n~l~~~~~~~l~~-~l~--~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A           99 VRLSDNAFGPTAQEPLID-FLS--KHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             EECCSCCCCTTTHHHHHH-HHH--HCTTCCEEECCSSCCH
T ss_pred             EECCCCcCCHHHHHHHHH-HHH--hCCCCCEEECcCCCCC
Confidence            5667777665     222 222  4566666666666553

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.32  E-value=1.1e-14  Score=113.97  Aligned_cols=123  Identities=20%  Similarity=0.265  Sum_probs=101.5

Q ss_pred             CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180            1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL   80 (242)
Q Consensus         1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L   80 (242)
                      ++||++|+|+.+|  .+.  .+++|++|++++|.+..++     .....+++|+.|++++|.+++ +| .+..+++|++|
T Consensus        52 ~L~ls~n~l~~l~--~~~--~l~~L~~L~l~~n~l~~l~-----~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L  120 (198)
T 1ds9_A           52 HLALSTNNIEKIS--SLS--GMENLRILSLGRNLIKKIE-----NLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVL  120 (198)
T ss_dssp             EEECSEEEESCCC--CHH--HHTTCCEEEEEEEEECSCS-----SHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEE
T ss_pred             EEECCCCCCcccc--ccc--cCCCCCEEECCCCCccccc-----chhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEE
Confidence            3789999999998  566  8899999999999998443     233457899999999999995 55 68899999999


Q ss_pred             eccCCCCCCCCC-cccCCCCCCCEEeCCCCCCCCCCccc----------ccCCCcccEEecCCCccc
Q 026180           81 NLSTNSLQGHIP-PTLGNLIVLESLDLSNNKLSGQIPQQ----------LGELTTLEVFDVSDNLLT  136 (242)
Q Consensus        81 ~L~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~----------~~~l~~L~~L~l~~N~l~  136 (242)
                      ++++|++++..+ ..+..+++|+.|++++|.+++..|..          +..+++|+.|+  +|.++
T Consensus       121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            999999995433 47889999999999999998765542          77899999886  66665

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.31  E-value=2.6e-12  Score=109.16  Aligned_cols=60  Identities=23%  Similarity=0.216  Sum_probs=35.8

Q ss_pred             CCCEEeccCCCCCCCCCcccCCCCCCCEEeCCC-CCCCCCCcccccCCCcccEEecCCCccc
Q 026180           76 GLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSN-NKLSGQIPQQLGELTTLEVFDVSDNLLT  136 (242)
Q Consensus        76 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~L~l~~N~l~  136 (242)
                      .++.|++++|+|+ .+|.......+|+.+++++ |.++...++.|..+++|+.|++++|+++
T Consensus       155 ~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          155 ESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             SCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred             hhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence            3556666777766 3333333445666666653 4555333345667777777777777776

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.30  E-value=5.6e-12  Score=114.96  Aligned_cols=142  Identities=25%  Similarity=0.256  Sum_probs=73.2

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchh------------hHHHhhcCccEEEccCCCCccCcch
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTEL------------EYEKLSNLITAIILSNNSFVGEIPT   69 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~------------~~~~~~~~L~~L~Ls~n~i~~~~p~   69 (242)
                      ++|++|+|+.+|.      .+++|++|++++|.+..++.....            .....+++|+.|++++|.+++ +|.
T Consensus       126 L~L~~N~l~~lp~------~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~  198 (622)
T 3g06_A          126 LWIFGNQLTSLPV------LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPT  198 (622)
T ss_dssp             EECCSSCCSCCCC------CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC
T ss_pred             EECCCCCCCcCCC------CCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCC
Confidence            3455555555554      235667777776665543221100            000112556666666666663 222


Q ss_pred             hccC-----------------CCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCC
Q 026180           70 SIAN-----------------LKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSD  132 (242)
Q Consensus        70 ~~~~-----------------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~  132 (242)
                      .+..                 +++|++|++++|++++ +|   ..+++|+.|++++|.++ .+|.   .+++|+.|++++
T Consensus       199 ~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~  270 (622)
T 3g06_A          199 LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYR  270 (622)
T ss_dssp             CCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCS
T ss_pred             ccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCC
Confidence            2111                 1445555555555552 33   23456666666666666 3444   456677777777


Q ss_pred             CccccCCCCCC-CCCCcCCccccCCCCC
Q 026180          133 NLLTGPIPRGK-QFNTFGKGSFDGNPGL  159 (242)
Q Consensus       133 N~l~~~~p~~~-~~~~~~~~~~~~n~~~  159 (242)
                      |.++ .+|... .+..+..+.+.+|+..
T Consensus       271 N~L~-~lp~~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          271 NQLT-RLPESLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             SCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred             CCCC-cCCHHHhhccccCEEEecCCCCC
Confidence            7777 455432 3445555666777643

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.27  E-value=2e-13  Score=114.88  Aligned_cols=150  Identities=13%  Similarity=0.101  Sum_probs=109.3

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +++++|.+...+...+   .+++|++|++++|.+...   ........+++|+.|+|++|.+++..+..+..+++|++|+
T Consensus        75 L~l~~n~l~~~~~~~~---~~~~L~~L~L~~~~l~~~---~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           75 FRCPRSFMDQPLAEHF---SPFRVQHMDLSNSVIEVS---TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             EECTTCEECSCCCSCC---CCBCCCEEECTTCEECHH---HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             EEcCCccccccchhhc---cCCCCCEEEccCCCcCHH---HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            5788898888877644   688999999999886521   1223345578999999999999888888888899999999


Q ss_pred             ccCC-CCCCC-CCcccCCCCCCCEEeCCCC-CCCCC-CcccccCCC-cccEEecCCCc--cc-cCCCCC-CCCCCcCCcc
Q 026180           82 LSTN-SLQGH-IPPTLGNLIVLESLDLSNN-KLSGQ-IPQQLGELT-TLEVFDVSDNL--LT-GPIPRG-KQFNTFGKGS  152 (242)
Q Consensus        82 L~~n-~l~~~-~p~~~~~l~~L~~L~l~~N-~l~~~-~p~~~~~l~-~L~~L~l~~N~--l~-~~~p~~-~~~~~~~~~~  152 (242)
                      +++| .+++. ++..+..+++|+.|++++| .+++. ++..+..++ +|+.|++++|.  ++ +.+|.. ..+.++..+.
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~  228 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  228 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence            9999 67753 5666778889999999998 88754 466677788 88888888884  43 222221 1234455556


Q ss_pred             ccCCC
Q 026180          153 FDGNP  157 (242)
Q Consensus       153 ~~~n~  157 (242)
                      +.+|.
T Consensus       229 l~~~~  233 (336)
T 2ast_B          229 LSDSV  233 (336)
T ss_dssp             CTTCT
T ss_pred             CCCCC
Confidence            66654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.25  E-value=6.5e-13  Score=111.78  Aligned_cols=127  Identities=17%  Similarity=0.208  Sum_probs=58.3

Q ss_pred             cccCCCCCccc-CCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCC-CCccC-cchhccCCCCCC
Q 026180            2 KDVNANNLTYL-QDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNN-SFVGE-IPTSIANLKGLR   78 (242)
Q Consensus         2 ~dLs~N~i~~l-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~-~p~~~~~l~~L~   78 (242)
                      +||++|.++.. -...+.  .+++|++|++++|.+...    .......+++|+.|++++| .+++. ++..+..+++|+
T Consensus        98 L~L~~~~l~~~~~~~~~~--~~~~L~~L~L~~~~l~~~----~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~  171 (336)
T 2ast_B           98 MDLSNSVIEVSTLHGILS--QCSKLQNLSLEGLRLSDP----IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  171 (336)
T ss_dssp             EECTTCEECHHHHHHHHT--TBCCCSEEECTTCBCCHH----HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             EEccCCCcCHHHHHHHHh--hCCCCCEEeCcCcccCHH----HHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence            45566655432 111223  455666666665543211    1111122455555555555 44431 344445555555


Q ss_pred             EEeccCC-CCCCC-CCcccCCCC-CCCEEeCCCC--CCC-CCCcccccCCCcccEEecCCCc
Q 026180           79 TLNLSTN-SLQGH-IPPTLGNLI-VLESLDLSNN--KLS-GQIPQQLGELTTLEVFDVSDNL  134 (242)
Q Consensus        79 ~L~L~~n-~l~~~-~p~~~~~l~-~L~~L~l~~N--~l~-~~~p~~~~~l~~L~~L~l~~N~  134 (242)
                      +|++++| .+++. ++..+..++ +|+.|++++|  .++ +.+|..+..+++|+.|++++|.
T Consensus       172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  233 (336)
T 2ast_B          172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV  233 (336)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred             EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence            5555555 55432 333344455 5555555555  233 2233444445555555555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.24  E-value=2.8e-13  Score=115.64  Aligned_cols=134  Identities=16%  Similarity=0.134  Sum_probs=103.1

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhc-CccEEEccCCCCccCcchhccCC-----C
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSN-LITAIILSNNSFVGEIPTSIANL-----K   75 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~~~p~~~~~l-----~   75 (242)
                      .+|++|+++...+..+.  ...+|++|++++|.|...........+..++ +|+.|+|++|.+++..+..+..+     +
T Consensus         3 ~~ls~n~~~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTS--IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EECCCCTTCCHHHHHHT--SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             cccccccchHHHHHHHh--CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            57899999876555444  4556999999999876543222223334455 89999999999998878877765     9


Q ss_pred             CCCEEeccCCCCCCCCCccc----CCC-CCCCEEeCCCCCCCCCCccccc----C-CCcccEEecCCCcccc
Q 026180           76 GLRTLNLSTNSLQGHIPPTL----GNL-IVLESLDLSNNKLSGQIPQQLG----E-LTTLEVFDVSDNLLTG  137 (242)
Q Consensus        76 ~L~~L~L~~n~l~~~~p~~~----~~l-~~L~~L~l~~N~l~~~~p~~~~----~-l~~L~~L~l~~N~l~~  137 (242)
                      +|++|++++|.+++..+..+    ..+ ++|+.|++++|++++..+..+.    . .++|+.|++++|.++.
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  152 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI  152 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence            99999999999997776644    444 8999999999999976665443    3 3699999999999984

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.15  E-value=7.9e-11  Score=99.10  Aligned_cols=85  Identities=15%  Similarity=0.072  Sum_probs=67.2

Q ss_pred             hcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCC-EEeCCCCCCCCCCcccccCCCcccEE
Q 026180           50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLE-SLDLSNNKLSGQIPQQLGELTTLEVF  128 (242)
Q Consensus        50 ~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-~L~l~~N~l~~~~p~~~~~l~~L~~L  128 (242)
                      +++|+.++|++|+++...+..|.++.+|+.+++++| +....+.+|.++.+|+ .+++.+ .++...+..|.+|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            567888888888888666677888888888888887 7766667788888888 888887 6765666788888888888


Q ss_pred             ecCCCccc
Q 026180          129 DVSDNLLT  136 (242)
Q Consensus       129 ~l~~N~l~  136 (242)
                      ++++|.++
T Consensus       303 ~l~~n~i~  310 (329)
T 3sb4_A          303 LATGDKIT  310 (329)
T ss_dssp             EECSSCCC
T ss_pred             EeCCCccC
Confidence            88888776

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.13  E-value=2.5e-13  Score=119.07  Aligned_cols=134  Identities=14%  Similarity=0.087  Sum_probs=82.9

Q ss_pred             cccCCCCCcccC----CCCCCCCCCCCCcccceeeeEEEeecCCch-hhHHHhhcCccEEEccCCCCccC----cchhcc
Q 026180            2 KDVNANNLTYLQ----DPLLGPVRYPALTYYGFSYYSLTLSNKGTE-LEYEKLSNLITAIILSNNSFVGE----IPTSIA   72 (242)
Q Consensus         2 ~dLs~N~i~~l~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~~~~~L~~L~Ls~n~i~~~----~p~~~~   72 (242)
                      ++|++|+|+..+    ...+.  .+++|++|++++|.+........ ......++.|+.|++++|.++..    ++..+.
T Consensus       204 L~L~~n~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  281 (461)
T 1z7x_W          204 LKLESCGVTSDNCRDLCGIVA--SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR  281 (461)
T ss_dssp             EECTTSCCBTTHHHHHHHHHH--HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred             EEccCCCCcHHHHHHHHHHHH--hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh
Confidence            678888887632    11233  56788888888876543211000 11111256788888888887753    566666


Q ss_pred             CCCCCCEEeccCCCCCCCCCcccC-----CCCCCCEEeCCCCCCCCC----CcccccCCCcccEEecCCCcccc
Q 026180           73 NLKGLRTLNLSTNSLQGHIPPTLG-----NLIVLESLDLSNNKLSGQ----IPQQLGELTTLEVFDVSDNLLTG  137 (242)
Q Consensus        73 ~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~  137 (242)
                      .+++|++|++++|.+++..+..+.     ..++|+.|++++|.+++.    ++..+..+++|+.|++++|.++.
T Consensus       282 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  355 (461)
T 1z7x_W          282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED  355 (461)
T ss_dssp             HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred             hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence            778888888888877644333222     225777777777777654    34455566777777777777654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.11  E-value=6.2e-11  Score=99.75  Aligned_cols=123  Identities=11%  Similarity=0.138  Sum_probs=83.9

Q ss_pred             cccCCCCCc--------------------ccCCCCCCCCC--------CCCCcccceeeeEEEeecCCchhhHHHhhcCc
Q 026180            2 KDVNANNLT--------------------YLQDPLLGPVR--------YPALTYYGFSYYSLTLSNKGTELEYEKLSNLI   53 (242)
Q Consensus         2 ~dLs~N~i~--------------------~l~~~~~~~~~--------~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L   53 (242)
                      +||++|+|.                    .||+.+|.  .        +++|+.|+++. .+..++...+..    +++|
T Consensus        54 LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~--~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~----~~~L  126 (329)
T 3sb4_A           54 LDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFS--NVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKG----CDNL  126 (329)
T ss_dssp             EEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTE--EEETTEEEECTTCCC-CBCT-TCCEECTTTTTT----CTTC
T ss_pred             EecCcceeEEecCccccccccccccccccccCHHHhc--ccccccccccCCCcEEECCc-cccchhHHHhhc----Cccc
Confidence            678888887                    67888887  7        88899999887 777777776654    7888


Q ss_pred             cEEEccCCCCccCcchhccC------------------------------------------------------------
Q 026180           54 TAIILSNNSFVGEIPTSIAN------------------------------------------------------------   73 (242)
Q Consensus        54 ~~L~Ls~n~i~~~~p~~~~~------------------------------------------------------------   73 (242)
                      +.|++++|.+....+.+|..                                                            
T Consensus       127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~  206 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF  206 (329)
T ss_dssp             CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred             ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence            99999888764333333332                                                            


Q ss_pred             ------------------CCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCccc-EEecCC
Q 026180           74 ------------------LKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLE-VFDVSD  132 (242)
Q Consensus        74 ------------------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~-~L~l~~  132 (242)
                                        +++|+.+++++|+++...+..|.++.+|+.+++.+| ++...+..|.++.+|+ .+++.+
T Consensus       207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~  283 (329)
T 3sb4_A          207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA  283 (329)
T ss_dssp             EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred             EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence                              456666666666666555556666666777766666 5545555666666666 666665

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.02  E-value=4e-12  Score=111.39  Aligned_cols=109  Identities=19%  Similarity=0.187  Sum_probs=49.2

Q ss_pred             cccCCCCCcccCCCC-CCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhc-cCCC----
Q 026180            2 KDVNANNLTYLQDPL-LGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSI-ANLK----   75 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~-~~l~----   75 (242)
                      +||++|+++..+... |.  .+++|++|++++|.+..............+++|+.|+|++|.++...+..+ ..+.    
T Consensus         8 L~Ls~~~l~~~~~~~~~~--~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~   85 (461)
T 1z7x_W            8 LDIQCEELSDARWAELLP--LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC   85 (461)
T ss_dssp             EEEESCCCCHHHHHHHHH--HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTC
T ss_pred             hhhhhcccCchhHHHHHh--hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCC
Confidence            456666665544322 33  455666666666554422111111222223455555555555543222222 1233    


Q ss_pred             CCCEEeccCCCCCC----CCCcccCCCCCCCEEeCCCCCCC
Q 026180           76 GLRTLNLSTNSLQG----HIPPTLGNLIVLESLDLSNNKLS  112 (242)
Q Consensus        76 ~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~l~~N~l~  112 (242)
                      +|++|++++|.++.    .++..+..+++|+.|++++|.++
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  126 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  126 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence            35555555555542    22444445555555555555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.01  E-value=4e-12  Score=109.12  Aligned_cols=153  Identities=16%  Similarity=0.094  Sum_probs=98.6

Q ss_pred             cccCCCCCcccCCCCCCCC---CCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhc-----cC
Q 026180            2 KDVNANNLTYLQDPLLGPV---RYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSI-----AN   73 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~-----~~   73 (242)
                      +||++|.|+......+...   ...+|+.|++++|.|....   ...+...+.+|+.|+|++|.++......+     ..
T Consensus        77 L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~---~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~  153 (372)
T 3un9_A           77 LNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG---LRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHD  153 (372)
T ss_dssp             EECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHH---HHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHST
T ss_pred             EEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHH---HHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhc
Confidence            6788888877554433211   2358899999888764321   12223446678899999998875444443     24


Q ss_pred             CCCCCEEeccCCCCCCC----CCcccCCCCCCCEEeCCCCCCCCC----CcccccCCCcccEEecCCCccccCCCCC---
Q 026180           74 LKGLRTLNLSTNSLQGH----IPPTLGNLIVLESLDLSNNKLSGQ----IPQQLGELTTLEVFDVSDNLLTGPIPRG---  142 (242)
Q Consensus        74 l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~~---  142 (242)
                      .+.|++|+|++|.++..    ++..+...++|+.|+|++|.++..    ++..+...++|+.|+|++|.++..-...   
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~  233 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR  233 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence            57889999999988642    333446678889999999988743    2445666778899999988886321100   


Q ss_pred             -C-CCCCcCCccccCCC
Q 026180          143 -K-QFNTFGKGSFDGNP  157 (242)
Q Consensus       143 -~-~~~~~~~~~~~~n~  157 (242)
                       . ....+..+++++|+
T Consensus       234 ~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          234 AAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHCSSCCEEECTTSS
T ss_pred             HHHhCCCCCEEeccCCC
Confidence             0 12445666677774

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.91  E-value=2.2e-11  Score=104.55  Aligned_cols=135  Identities=19%  Similarity=0.155  Sum_probs=93.4

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHH-HhhcCccEEEccCCCCccC----cchhccCCCC
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYE-KLSNLITAIILSNNSFVGE----IPTSIANLKG   76 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~~----~p~~~~~l~~   76 (242)
                      +||++|.|+......+.. .+++|+.|++++|.|............ .....|+.|+|++|.|+..    ++..+...++
T Consensus       106 L~Ls~n~l~~~~~~~l~~-~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~  184 (372)
T 3un9_A          106 VNLASCQLDPAGLRTLLP-VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS  184 (372)
T ss_dssp             EECTTCCCCHHHHHHTHH-HHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSS
T ss_pred             EEecCCCCCHHHHHHHHH-HHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCC
Confidence            688999887644333321 456889999999877543222111111 1246799999999998742    4445577889


Q ss_pred             CCEEeccCCCCCCCC----CcccCCCCCCCEEeCCCCCCCCC----CcccccCCCcccEEecCCCcccc
Q 026180           77 LRTLNLSTNSLQGHI----PPTLGNLIVLESLDLSNNKLSGQ----IPQQLGELTTLEVFDVSDNLLTG  137 (242)
Q Consensus        77 L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~  137 (242)
                      |++|+|++|.|++..    ...+...++|+.|+|++|.++..    ++..+...++|+.|+|++|.++.
T Consensus       185 L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             CCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             cCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            999999999987532    44566678899999999999743    33345567889999999998863

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.61  E-value=3.7e-08  Score=80.41  Aligned_cols=65  Identities=28%  Similarity=0.344  Sum_probs=29.6

Q ss_pred             hcCccEEEccCCCCcc--CcchhccCCCCCCEEeccCCCCCCC-CCcccCCCCCCCEEeCCCCCCCCCC
Q 026180           50 SNLITAIILSNNSFVG--EIPTSIANLKGLRTLNLSTNSLQGH-IPPTLGNLIVLESLDLSNNKLSGQI  115 (242)
Q Consensus        50 ~~~L~~L~Ls~n~i~~--~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~  115 (242)
                      ++.|+.|+|++|.|++  .+|..+..+++|+.|+|++|+|++. .-..+..+ +|+.|+|++|.+++.+
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~  236 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTF  236 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGC
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcccc
Confidence            4455555555555554  2233444455555555555555532 01112222 4555555555554433

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.58  E-value=3.3e-09  Score=81.98  Aligned_cols=116  Identities=16%  Similarity=0.168  Sum_probs=72.0

Q ss_pred             CCCCCcccceeee-EEEeecCCchhhHHHhhcCccEEEccCCCCccC----cchhccCCCCCCEEeccCCCCCCC----C
Q 026180           21 RYPALTYYGFSYY-SLTLSNKGTELEYEKLSNLITAIILSNNSFVGE----IPTSIANLKGLRTLNLSTNSLQGH----I   91 (242)
Q Consensus        21 ~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~   91 (242)
                      ..++|++|++++| .|...............+.|+.|+|++|.|...    +...+...+.|++|+|++|.|+..    +
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            4567778888776 665432222222222245778888888887642    334444557788888888887643    2


Q ss_pred             CcccCCCCCCCEEeC--CCCCCCCC----CcccccCCCcccEEecCCCccc
Q 026180           92 PPTLGNLIVLESLDL--SNNKLSGQ----IPQQLGELTTLEVFDVSDNLLT  136 (242)
Q Consensus        92 p~~~~~l~~L~~L~l--~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~  136 (242)
                      ...+...++|+.|++  ++|.++..    +...+...++|+.|++++|.+.
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            344566677888888  77777643    2233445577888888877764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.52  E-value=3.1e-08  Score=89.22  Aligned_cols=68  Identities=9%  Similarity=0.069  Sum_probs=33.0

Q ss_pred             CCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCcc----CcchhccCCCCCCEEeccCCCCC
Q 026180           21 RYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVG----EIPTSIANLKGLRTLNLSTNSLQ   88 (242)
Q Consensus        21 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~----~~p~~~~~l~~L~~L~L~~n~l~   88 (242)
                      .+++|++|++++|.+..............+++|+.|++++|.+++    .++..+..+++|+.|++++|.+.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~  233 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL  233 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence            345666666666655432211122233345555555555555542    22333344555555555555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.49  E-value=5.2e-07  Score=77.98  Aligned_cols=98  Identities=13%  Similarity=0.135  Sum_probs=48.2

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      ++|++|+++.|+..+|.   ..+|+.+.+..+ +..++...+..    +.+|+.+++..| ++.....+|.+ .+|+.+.
T Consensus       185 l~l~~n~l~~I~~~aF~---~~~L~~l~lp~~-l~~I~~~aF~~----~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~  254 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFV---YAGIEEVLLPVT-LKEIGSQAFLK----TSQLKTIEIPEN-VSTIGQEAFRE-SGITTVK  254 (401)
T ss_dssp             EECTTSCCSEECTTTTT---TCCCSEEECCTT-CCEECTTTTTT----CTTCCCEECCTT-CCEECTTTTTT-CCCSEEE
T ss_pred             eecCCCcceEechhhEe---ecccCEEEeCCc-hheehhhHhhC----CCCCCEEecCCC-ccCcccccccc-CCccEEE
Confidence            46677777777777765   256666666533 44454444433    455555555443 33233333433 4444444


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNK  110 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~  110 (242)
                      + .+.++......|.++.+|+.+++.+|.
T Consensus       255 l-p~~i~~I~~~aF~~c~~L~~l~l~~~~  282 (401)
T 4fdw_A          255 L-PNGVTNIASRAFYYCPELAEVTTYGST  282 (401)
T ss_dssp             E-ETTCCEECTTTTTTCTTCCEEEEESSC
T ss_pred             e-CCCccEEChhHhhCCCCCCEEEeCCcc
Confidence            4 223332333444444444444444443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.44  E-value=7e-07  Score=77.17  Aligned_cols=141  Identities=12%  Similarity=0.054  Sum_probs=105.6

Q ss_pred             ccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEec
Q 026180            3 DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNL   82 (242)
Q Consensus         3 dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L   82 (242)
                      +|. +.++.|+..+|.  .+++|+.+.+..+ +..++...+..     .+|+.+.| .+.++...+.+|.++++|+.+++
T Consensus       209 ~lp-~~l~~I~~~aF~--~~~~L~~l~l~~~-l~~I~~~aF~~-----~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l  278 (401)
T 4fdw_A          209 LLP-VTLKEIGSQAFL--KTSQLKTIEIPEN-VSTIGQEAFRE-----SGITTVKL-PNGVTNIASRAFYYCPELAEVTT  278 (401)
T ss_dssp             ECC-TTCCEECTTTTT--TCTTCCCEECCTT-CCEECTTTTTT-----CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEE
T ss_pred             EeC-CchheehhhHhh--CCCCCCEEecCCC-ccCcccccccc-----CCccEEEe-CCCccEEChhHhhCCCCCCEEEe
Confidence            454 559999999999  8999999999864 56666666543     57899999 45577677889999999999999


Q ss_pred             cCCCCC-----CCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCC-CCCcCCccccCC
Q 026180           83 STNSLQ-----GHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQ-FNTFGKGSFDGN  156 (242)
Q Consensus        83 ~~n~l~-----~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~-~~~~~~~~~~~n  156 (242)
                      .+|.+.     ...+..|.++.+|+.+++. +.++......|.+|.+|+.+.+..| ++ .++.... --.+..+.+.+|
T Consensus       279 ~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~~L~~l~l~~n  355 (401)
T 4fdw_A          279 YGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNTGIKEVKVEGT  355 (401)
T ss_dssp             ESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSSCCCEEEECCS
T ss_pred             CCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCCCCCEEEEcCC
Confidence            988775     4666789999999999999 4577667778999999999999665 44 2333221 114555556555

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.42  E-value=1.3e-07  Score=85.25  Aligned_cols=127  Identities=13%  Similarity=0.090  Sum_probs=86.0

Q ss_pred             cccCCCCCcccCCCCCCCCCCC-CCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccC----cchhccCCCC
Q 026180            2 KDVNANNLTYLQDPLLGPVRYP-ALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGE----IPTSIANLKG   76 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~----~p~~~~~l~~   76 (242)
                      +||++|.++......+.. .++ +|++|+++++.- . ...........+++|+.|+|++|.+++.    ++..+..+++
T Consensus       117 L~L~~~~i~~~~~~~l~~-~~~~~L~~L~L~~~~~-~-~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~  193 (592)
T 3ogk_B          117 VHFRRMIVSDLDLDRLAK-ARADDLETLKLDKCSG-F-TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTS  193 (592)
T ss_dssp             EEEESCBCCHHHHHHHHH-HHGGGCCEEEEESCEE-E-EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCC
T ss_pred             EEeeccEecHHHHHHHHH-hccccCcEEECcCCCC-c-CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCC
Confidence            567777665433222220 133 499999988762 1 1111222334578999999999988765    4445567899


Q ss_pred             CCEEeccCCCCCCC----CCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCC
Q 026180           77 LRTLNLSTNSLQGH----IPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSD  132 (242)
Q Consensus        77 L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~  132 (242)
                      |++|++++|.+++.    ++..+..+++|+.|++++|.+.+ +|..+..+++|+.|+++.
T Consensus       194 L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~  252 (592)
T 3ogk_B          194 LEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGS  252 (592)
T ss_dssp             CCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECB
T ss_pred             ccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccc
Confidence            99999999998733    33345678999999999998874 566777777777777764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.40  E-value=7.2e-08  Score=78.67  Aligned_cols=68  Identities=28%  Similarity=0.372  Sum_probs=55.5

Q ss_pred             cCCCCCCEEeccCCCCCC--CCCcccCCCCCCCEEeCCCCCCCCCCcccccCCC--cccEEecCCCccccCCCC
Q 026180           72 ANLKGLRTLNLSTNSLQG--HIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELT--TLEVFDVSDNLLTGPIPR  141 (242)
Q Consensus        72 ~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~--~L~~L~l~~N~l~~~~p~  141 (242)
                      ..++.|+.|+|++|+|++  .+|..+..+++|+.|+|++|++++.  ..+..+.  +|+.|+|++|++.+.+|.
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence            468899999999999997  3456677899999999999999965  2334344  899999999999987663

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.18  E-value=3.2e-08  Score=76.41  Aligned_cols=111  Identities=11%  Similarity=0.069  Sum_probs=78.8

Q ss_pred             cccCCC-CCcccCCCCCCC--CCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccC----cchhccCC
Q 026180            2 KDVNAN-NLTYLQDPLLGP--VRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGE----IPTSIANL   74 (242)
Q Consensus         2 ~dLs~N-~i~~l~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~----~p~~~~~l   74 (242)
                      ++|++| .|..-....+..  ...++|++|++++|.|...............+.|+.|+|++|.|+..    +...+...
T Consensus        41 L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n  120 (185)
T 1io0_A           41 VNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSN  120 (185)
T ss_dssp             EECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGC
T ss_pred             EEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhC
Confidence            688888 886532221110  14578999999999886543323333333457899999999999853    45667777


Q ss_pred             CCCCEEec--cCCCCCCCC----CcccCCCCCCCEEeCCCCCCC
Q 026180           75 KGLRTLNL--STNSLQGHI----PPTLGNLIVLESLDLSNNKLS  112 (242)
Q Consensus        75 ~~L~~L~L--~~n~l~~~~----p~~~~~l~~L~~L~l~~N~l~  112 (242)
                      +.|++|+|  ++|.|+...    ...+...++|+.|++++|.+.
T Consensus       121 ~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          121 TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            89999999  889998543    234555689999999999885

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.08  E-value=1.8e-07  Score=84.25  Aligned_cols=111  Identities=17%  Similarity=0.159  Sum_probs=58.0

Q ss_pred             CCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEcc--C----CCCccC-----cchhccCCCCCCEEeccCCCCCCC
Q 026180           22 YPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILS--N----NSFVGE-----IPTSIANLKGLRTLNLSTNSLQGH   90 (242)
Q Consensus        22 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls--~----n~i~~~-----~p~~~~~l~~L~~L~L~~n~l~~~   90 (242)
                      +++|+.|.++.|.++..   ........+++|+.|+++  +    +.++..     ++..+..+++|+.|++++ .+++.
T Consensus       371 ~~~L~~L~~~~~~l~~~---~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~  446 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNA---ALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK  446 (594)
T ss_dssp             CTTCCEEEEEESCCCHH---HHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred             chhHHHHHHhcCCcCHH---HHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence            56777776666554321   111222335667777776  3    444421     112244556666666655 44443


Q ss_pred             CCcccCC-CCCCCEEeCCCCCCCCCCcccc-cCCCcccEEecCCCccc
Q 026180           91 IPPTLGN-LIVLESLDLSNNKLSGQIPQQL-GELTTLEVFDVSDNLLT  136 (242)
Q Consensus        91 ~p~~~~~-l~~L~~L~l~~N~l~~~~p~~~-~~l~~L~~L~l~~N~l~  136 (242)
                      .+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.++
T Consensus       447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~  494 (594)
T 2p1m_B          447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG  494 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred             HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence            3333333 5666666666666654333333 44566666666666653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.05  E-value=6.4e-07  Score=80.57  Aligned_cols=80  Identities=13%  Similarity=0.157  Sum_probs=36.6

Q ss_pred             cccCCCCCcccCCCCCC--CCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCC-CCccCcchhccCCCCCC
Q 026180            2 KDVNANNLTYLQDPLLG--PVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNN-SFVGEIPTSIANLKGLR   78 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~p~~~~~l~~L~   78 (242)
                      ++|++|.++......+.  ...+++|+.|++++|. ..+...........+++|+.|++++| .+. .++..+..+++|+
T Consensus       161 L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~  238 (594)
T 2p1m_B          161 LDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLE  238 (594)
T ss_dssp             EECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCS
T ss_pred             EeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcce
Confidence            45666665443322111  0144566666666554 11111111222233566777777766 222 2444444555555


Q ss_pred             EEecc
Q 026180           79 TLNLS   83 (242)
Q Consensus        79 ~L~L~   83 (242)
                      .|+++
T Consensus       239 ~L~l~  243 (594)
T 2p1m_B          239 ELGTG  243 (594)
T ss_dssp             EEECS
T ss_pred             Ecccc
Confidence            55543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.83  E-value=2.5e-06  Score=72.71  Aligned_cols=109  Identities=17%  Similarity=0.209  Sum_probs=54.7

Q ss_pred             CCCCCcccceeeeE-EEeecCCchhhHHHhhcCccEEEccCCCCccCcchhcc--CCCCCCEEeccC--CCCCCC-----
Q 026180           21 RYPALTYYGFSYYS-LTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIA--NLKGLRTLNLST--NSLQGH-----   90 (242)
Q Consensus        21 ~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~--~l~~L~~L~L~~--n~l~~~-----   90 (242)
                      .+|+|+.|.+++|. +..     . ..  ..++|+.|+|..+.++...-..+.  .+++|+.|+|+.  |...+.     
T Consensus       170 ~~P~L~~L~L~g~~~l~l-----~-~~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~  241 (362)
T 2ra8_A          170 AMPLLNNLKIKGTNNLSI-----G-KK--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV  241 (362)
T ss_dssp             TCTTCCEEEEECCBTCBC-----C-SC--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred             cCCCCcEEEEeCCCCcee-----c-cc--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence            56778888777651 111     0 00  145667777766666533333332  566677666642  111111     


Q ss_pred             CCccc--CCCCCCCEEeCCCCCCCCCCccccc---CCCcccEEecCCCcccc
Q 026180           91 IPPTL--GNLIVLESLDLSNNKLSGQIPQQLG---ELTTLEVFDVSDNLLTG  137 (242)
Q Consensus        91 ~p~~~--~~l~~L~~L~l~~N~l~~~~p~~~~---~l~~L~~L~l~~N~l~~  137 (242)
                      +...+  ..+++|+.|++.+|.++...+..+.   .+++|+.|+|+.|.++.
T Consensus       242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            00111  2356666777766666532222222   35566667776666653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.79  E-value=4.4e-06  Score=63.68  Aligned_cols=83  Identities=13%  Similarity=0.113  Sum_probs=49.8

Q ss_pred             CccEEEccCCCCccCcchhccCCCCCCEEeccCCC-CCCCCCcccCCC----CCCCEEeCCCCC-CCCCCcccccCCCcc
Q 026180           52 LITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNS-LQGHIPPTLGNL----IVLESLDLSNNK-LSGQIPQQLGELTTL  125 (242)
Q Consensus        52 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~l~~N~-l~~~~p~~~~~l~~L  125 (242)
                      .|+.||++++.|+..--..+..+++|+.|+|+++. +++..-..+..+    ++|+.|+|+++. +|..--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            46677777777664444445667777777777764 554333344443    357777777763 653322345567777


Q ss_pred             cEEecCCCc
Q 026180          126 EVFDVSDNL  134 (242)
Q Consensus       126 ~~L~l~~N~  134 (242)
                      +.|+++++.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            777777653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.69  E-value=0.00011  Score=62.46  Aligned_cols=79  Identities=9%  Similarity=0.080  Sum_probs=34.1

Q ss_pred             hcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEe
Q 026180           50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD  129 (242)
Q Consensus        50 ~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~  129 (242)
                      ...|+.+.+..+ +.......|.++.+|+.+.+..+.++......|.++.+|+.+++..+ ++..-...|.+|.+|+.+.
T Consensus       262 ~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~  339 (379)
T 4h09_A          262 CTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS  339 (379)
T ss_dssp             CTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred             eehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence            334444444322 33233334444455555555444444333444444455555554432 3323333444444444443


Q ss_pred             c
Q 026180          130 V  130 (242)
Q Consensus       130 l  130 (242)
                      +
T Consensus       340 i  340 (379)
T 4h09_A          340 Y  340 (379)
T ss_dssp             C
T ss_pred             E
Confidence            3

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.67  E-value=0.00017  Score=61.80  Aligned_cols=119  Identities=10%  Similarity=0.124  Sum_probs=86.4

Q ss_pred             CCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCC
Q 026180            7 NNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNS   86 (242)
Q Consensus         7 N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~   86 (242)
                      +.++.++..+|.  ...+|+.+.+..+.. .+....+.    ....|+.+.+. +.++......|.++.+|+.+++..+ 
T Consensus       251 ~~v~~i~~~aF~--~c~~L~~i~lp~~~~-~I~~~aF~----~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-  321 (394)
T 4gt6_A          251 NGVARIETHAFD--SCAYLASVKMPDSVV-SIGTGAFM----NCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-  321 (394)
T ss_dssp             TTEEEECTTTTT--TCSSCCEEECCTTCC-EECTTTTT----TCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-
T ss_pred             CcceEcccceee--ecccccEEecccccc-eecCcccc----cccccccccCC-CcccccCceeecCCCCcCEEEeCCc-
Confidence            456677778888  777888887765433 23444443    36788888885 4566566678888889999988765 


Q ss_pred             CCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCcc
Q 026180           87 LQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLL  135 (242)
Q Consensus        87 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l  135 (242)
                      ++.....+|.++.+|+.+.+..+ ++..-...|.+|.+|+.+++.++..
T Consensus       322 v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          322 ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence            66566677888899999988654 6656667888999999998887654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.45  E-value=0.00048  Score=58.88  Aligned_cols=80  Identities=9%  Similarity=0.065  Sum_probs=46.8

Q ss_pred             hcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEe
Q 026180           50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD  129 (242)
Q Consensus        50 ~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~  129 (242)
                      ..+|+.+.+..+ ++..-..+|.++.+|+.+++..+ ++.....+|.++.+|+.+++..+ ++......|.+|.+|+.++
T Consensus       296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~  372 (394)
T 4fs7_A          296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVE  372 (394)
T ss_dssp             CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred             cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence            455666666443 44344556666666666666533 55444556666666666666655 5444455666666666666


Q ss_pred             cCC
Q 026180          130 VSD  132 (242)
Q Consensus       130 l~~  132 (242)
                      +..
T Consensus       373 lp~  375 (394)
T 4fs7_A          373 LPK  375 (394)
T ss_dssp             EEG
T ss_pred             ECC
Confidence            543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.45  E-value=4.7e-05  Score=64.79  Aligned_cols=85  Identities=14%  Similarity=0.162  Sum_probs=39.9

Q ss_pred             hhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccC--CCCCCCEEeCCC--CCCCCC-----Ccccc
Q 026180           49 LSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLG--NLIVLESLDLSN--NKLSGQ-----IPQQL  119 (242)
Q Consensus        49 ~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~l~~--N~l~~~-----~p~~~  119 (242)
                      .++.|+.|.|++|.-. .++. + .+++|+.|++..+.+.......+.  .+++|+.|+|+.  |...+.     +...+
T Consensus       170 ~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l  246 (362)
T 2ra8_A          170 AMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF  246 (362)
T ss_dssp             TCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred             cCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence            3456666666665211 1222 2 256666666666655432222222  456666666532  111111     00111


Q ss_pred             --cCCCcccEEecCCCccc
Q 026180          120 --GELTTLEVFDVSDNLLT  136 (242)
Q Consensus       120 --~~l~~L~~L~l~~N~l~  136 (242)
                        ..+++|+.|++.+|.+.
T Consensus       247 ~~~~~p~Lr~L~L~~~~i~  265 (362)
T 2ra8_A          247 SKDRFPNLKWLGIVDAEEQ  265 (362)
T ss_dssp             CTTTCTTCCEEEEESCTTH
T ss_pred             hcCCCCCcCEEeCCCCCCc
Confidence              23566666666666654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.43  E-value=0.00038  Score=50.18  Aligned_cols=37  Identities=24%  Similarity=0.255  Sum_probs=19.2

Q ss_pred             CCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccc
Q 026180          100 VLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT  136 (242)
Q Consensus       100 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~  136 (242)
                      +|+.|+|++|+|+...++.|..+++|+.|+|++|++.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            3455555555555444444555555555555555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.42  E-value=0.00022  Score=51.50  Aligned_cols=57  Identities=23%  Similarity=0.265  Sum_probs=44.1

Q ss_pred             cEEEccCCCCc-cCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCC
Q 026180           54 TAIILSNNSFV-GEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLS  112 (242)
Q Consensus        54 ~~L~Ls~n~i~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  112 (242)
                      +.++.++++++ ..+|..+  ..+++.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47788888886 3455443  346889999999998666677888899999999999875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.40  E-value=2e-05  Score=60.00  Aligned_cols=86  Identities=12%  Similarity=0.062  Sum_probs=63.0

Q ss_pred             CCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCC-CccCcchhccCC----CCCCEEeccCCC-CCCCCCcccC
Q 026180           23 PALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNS-FVGEIPTSIANL----KGLRTLNLSTNS-LQGHIPPTLG   96 (242)
Q Consensus        23 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~p~~~~   96 (242)
                      ..|+.||++++.|+..  +.. .. ..+++|+.|+|++|. |+..-=..+..+    ++|++|+|+++. +++..-..+.
T Consensus        61 ~~L~~LDLs~~~Itd~--GL~-~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~  136 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSI--GFD-HM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH  136 (176)
T ss_dssp             CCEEEEEEESCCCCGG--GGG-GG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred             ceEeEEeCcCCCccHH--HHH-Hh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence            3799999999875432  222 11 358899999999995 764433445554    379999999975 8765556678


Q ss_pred             CCCCCCEEeCCCCC-CC
Q 026180           97 NLIVLESLDLSNNK-LS  112 (242)
Q Consensus        97 ~l~~L~~L~l~~N~-l~  112 (242)
                      .+++|+.|+++++. ++
T Consensus       137 ~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          137 HFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             GCTTCCEEEEESCTTCC
T ss_pred             cCCCCCEEECCCCCCCC
Confidence            89999999999975 44

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.40  E-value=0.00016  Score=61.84  Aligned_cols=117  Identities=12%  Similarity=0.151  Sum_probs=83.9

Q ss_pred             CCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCC
Q 026180            7 NNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNS   86 (242)
Q Consensus         7 N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~   86 (242)
                      +.+..|+..+|.  ...+|+.+.+. +.+..++...+..    +.+|+.++|..+ ++.+-..+|.++.+|+.+.+..+ 
T Consensus       274 ~~~~~I~~~aF~--~c~~L~~i~l~-~~i~~I~~~aF~~----c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-  344 (394)
T 4gt6_A          274 DSVVSIGTGAFM--NCPALQDIEFS-SRITELPESVFAG----CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-  344 (394)
T ss_dssp             TTCCEECTTTTT--TCTTCCEEECC-TTCCEECTTTTTT----CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-
T ss_pred             cccceecCcccc--cccccccccCC-CcccccCceeecC----CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-
Confidence            445678888998  88999999886 3455566666544    789999999765 66566788999999999999765 


Q ss_pred             CCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCcc
Q 026180           87 LQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLL  135 (242)
Q Consensus        87 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l  135 (242)
                      ++.....+|.++.+|+.+++.++...   -..+..+..|+.+.+..|.+
T Consensus       345 v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          345 VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred             cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence            77566778999999999999988654   24567778888887766554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.35  E-value=0.00039  Score=58.96  Aligned_cols=107  Identities=14%  Similarity=0.085  Sum_probs=78.4

Q ss_pred             CcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCC
Q 026180            9 LTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQ   88 (242)
Q Consensus         9 i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~   88 (242)
                      ++.|+..+|.  ...+|+.+.+..+ +..++...+.    .+.+|+.+.+.++.++..-..+|.++.+|+.+.|..+ ++
T Consensus       251 v~~I~~~aF~--~~~~l~~i~l~~~-i~~i~~~aF~----~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~  322 (379)
T 4h09_A          251 VTSIGSFLLQ--NCTALKTLNFYAK-VKTVPYLLCS----GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK  322 (379)
T ss_dssp             CCEECTTTTT--TCTTCCEEEECCC-CSEECTTTTT----TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC
T ss_pred             ccEeCccccc--eeehhcccccccc-ceeccccccc----cccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc
Confidence            5666666666  6666776666532 4444444443    3789999999999998777889999999999999765 66


Q ss_pred             CCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCc
Q 026180           89 GHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTT  124 (242)
Q Consensus        89 ~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~  124 (242)
                      .....+|.++.+|+.+.+..+ ++..-...|.++..
T Consensus       323 ~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          323 TIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred             EEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence            566778999999999988654 65455566776653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.27  E-value=0.00034  Score=59.87  Aligned_cols=106  Identities=13%  Similarity=0.087  Sum_probs=81.2

Q ss_pred             cCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCC
Q 026180           12 LQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHI   91 (242)
Q Consensus        12 l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~   91 (242)
                      ++..+|.  ...+|+.+.+..+ +..++...+..    +.+|+.++|..+ ++..-..+|.++.+|+.+++..+ ++...
T Consensus       288 i~~~~F~--~~~~L~~i~l~~~-i~~I~~~aF~~----c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~  358 (394)
T 4fs7_A          288 VPEKTFY--GCSSLTEVKLLDS-VKFIGEEAFES----CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIG  358 (394)
T ss_dssp             ECTTTTT--TCTTCCEEEECTT-CCEECTTTTTT----CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred             ecccccc--ccccccccccccc-cceechhhhcC----CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence            5666666  6778888877654 55666665544    789999999754 77566789999999999999877 77677


Q ss_pred             CcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEE
Q 026180           92 PPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVF  128 (242)
Q Consensus        92 p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L  128 (242)
                      ..+|.++.+|+.+++..+ ++ .+...|.++++|+.+
T Consensus       359 ~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          359 ANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             HHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            788999999999999765 33 345678888888764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.05  E-value=6.4e-05  Score=58.27  Aligned_cols=84  Identities=12%  Similarity=0.173  Sum_probs=51.8

Q ss_pred             hcCccEEEccCC-CCccC----cchhccCCCCCCEEeccCCCCCCCCCc----ccCCCCCCCEEeCCCCCCCCC----Cc
Q 026180           50 SNLITAIILSNN-SFVGE----IPTSIANLKGLRTLNLSTNSLQGHIPP----TLGNLIVLESLDLSNNKLSGQ----IP  116 (242)
Q Consensus        50 ~~~L~~L~Ls~n-~i~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~l~~N~l~~~----~p  116 (242)
                      -+.|+.|+|++| .|...    +-+.+..-+.|+.|+|++|+|....-.    .+..=..|+.|+|++|.|...    +-
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            346788888775 66521    334455556788888888887643222    233346788888888888632    22


Q ss_pred             ccccCCCcccEEecCCC
Q 026180          117 QQLGELTTLEVFDVSDN  133 (242)
Q Consensus       117 ~~~~~l~~L~~L~l~~N  133 (242)
                      ..+..-..|+.|+|++|
T Consensus       120 ~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHTTTTCCCSEEECCCC
T ss_pred             HHHhhCCceeEEECCCC
Confidence            23445567888888754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.34  E-value=0.0012  Score=51.07  Aligned_cols=14  Identities=43%  Similarity=0.591  Sum_probs=6.7

Q ss_pred             CCCCEEeccCCCCC
Q 026180           75 KGLRTLNLSTNSLQ   88 (242)
Q Consensus        75 ~~L~~L~L~~n~l~   88 (242)
                      +.|+.|+|++|+|+
T Consensus        98 ~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           98 PSLRVLNVESNFLT  111 (197)
T ss_dssp             SSCCEEECCSSBCC
T ss_pred             CccCeEecCCCcCC
Confidence            44444555555444

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=90.09  E-value=0.041  Score=31.27  Aligned_cols=22  Identities=9%  Similarity=0.158  Sum_probs=10.4

Q ss_pred             eeeehhhhhhhHhhhhHHhhhc
Q 026180          192 TVLIGYASGTVIGVVLGHIFST  213 (242)
Q Consensus       192 ~~~~~~~~~~v~~~~~~~~~~~  213 (242)
                      .++.+++.++++++++++.++.
T Consensus        12 ~IA~gVVgGv~~~~ii~~~~~~   33 (44)
T 2ks1_B           12 SIATGMVGALLLLLVVALGIGL   33 (44)
T ss_dssp             SSTHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEeehhHHHHHHHHHHHHHHH
Confidence            3455555555554444444333

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=86.55  E-value=0.081  Score=30.00  Aligned_cols=18  Identities=28%  Similarity=0.438  Sum_probs=8.1

Q ss_pred             eeehhhhhhhHhhhhHHh
Q 026180          193 VLIGYASGTVIGVVLGHI  210 (242)
Q Consensus       193 ~~~~~~~~~v~~~~~~~~  210 (242)
                      ++.+++.++++++++++.
T Consensus        12 IA~gVVgGv~~v~ii~~~   29 (44)
T 2l2t_A           12 IAAGVIGGLFILVIVGLT   29 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             EEEeehHHHHHHHHHHHH
Confidence            444555444444444433

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=84.71  E-value=0.27  Score=26.90  Aligned_cols=9  Identities=22%  Similarity=0.457  Sum_probs=3.6

Q ss_pred             hhhhhhhHh
Q 026180          196 GYASGTVIG  204 (242)
Q Consensus       196 ~~~~~~v~~  204 (242)
                      |++++++++
T Consensus        15 GiVvG~v~g   23 (38)
T 2k1k_A           15 AVIFGLLLG   23 (38)
T ss_dssp             HHHHHHHHH
T ss_pred             eeehHHHHH
Confidence            344444333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	242
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	8e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.002
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	4e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	7e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 80.2 bits (196), Expect = 3e-18
 Identities = 25/62 (40%), Positives = 33/62 (53%)

Query: 105 DLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPL 164
           DL NN++ G +PQ L +L  L   +VS N L G IP+G     F   ++  N  LCG PL
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

Query: 165 SK 166
             
Sbjct: 310 PA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 66.3 bits (160), Expect = 2e-13
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 58  LSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIP 116
           L NN   G +P  +  LK L +LN+S N+L G I P  GNL   +    +NNK     P
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSP 308

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 71.6 bits (174), Expect = 3e-15
 Identities = 24/129 (18%), Positives = 45/129 (34%), Gaps = 6/129 (4%)

Query: 5   NANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFV 64
               LT L+           L             N+  ++        +T + L  N+  
Sbjct: 261 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 320

Query: 65  GEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTT 124
              P  +++L  L+ L  + N +      +L NL  +  L   +N++S   P  L  LT 
Sbjct: 321 DISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTR 374

Query: 125 LEVFDVSDN 133
           +    ++D 
Sbjct: 375 ITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.0 bits (144), Expect = 3e-11
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 73  NLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSD 132
           NLK L  L L  N++    P  + +L  L+ L  +NNK+S      L  LT +       
Sbjct: 305 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGH 360

Query: 133 NLLTGPIP 140
           N ++   P
Sbjct: 361 NQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 56  IILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQI 115
           +I +NN      P  I     L  L+L+ N L+     TL +L  L  LDL+NN++S   
Sbjct: 202 LIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA 257

Query: 116 PQQLGELTTLEVFDVSDNLLTGPIP 140
           P  L  LT L    +  N ++   P
Sbjct: 258 P--LSGLTKLTELKLGANQISNISP 280

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 13/88 (14%)

Query: 47  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTN---SLQGHIPPTLGNLIVLES 103
             L+  +   +L   +    +  S  +L  + TL        S+ G     +  L  L  
Sbjct: 19  TALAEKM-KTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQ 70

Query: 104 LDLSNNKLSGQIPQQLGELTTLEVFDVS 131
           ++ SNN+L+   P  L  LT L    ++
Sbjct: 71  INFSNNQLTDITP--LKNLTKLVDILMN 96

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 9e-05
 Identities = 22/126 (17%), Positives = 43/126 (34%), Gaps = 24/126 (19%)

Query: 38  SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGN 97
           +N+ +++    +   +  + L+ N        ++A+L  L  L+L+ N +    P  L  
Sbjct: 206 NNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSG 261

Query: 98  LIVLESLDLSNNKLSGQIP--------------------QQLGELTTLEVFDVSDNLLTG 137
           L  L  L L  N++S   P                      +  L  L    +  N ++ 
Sbjct: 262 LTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD 321

Query: 138 PIPRGK 143
             P   
Sbjct: 322 ISPVSS 327

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.4 bits (88), Expect = 5e-04
 Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 4/69 (5%)

Query: 72  ANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVS 131
             L       L   ++      +  +L  + +L      +       +  L  L   + S
Sbjct: 19  TALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFS 74

Query: 132 DNLLTGPIP 140
           +N LT   P
Sbjct: 75  NNQLTDITP 83

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (129), Expect = 3e-09
 Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 9/86 (10%)

Query: 46  YEKLSNLITAIILSNNSFVGE----IPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLI-- 99
             +  +++  + L++          +  ++     LR L+LS N L       L   +  
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 100 ---VLESLDLSNNKLSGQIPQQLGEL 122
              +LE L L +   S ++  +L  L
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (125), Expect = 7e-09
 Identities = 20/78 (25%), Positives = 26/78 (33%), Gaps = 9/78 (11%)

Query: 73  NLKGLRTLNLSTNSLQG----HIPPTLGNLIVLESLDLSNNKLSGQIPQQLGE-----LT 123
               LR L L+   +       +  TL     L  LDLSNN L      QL E       
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 124 TLEVFDVSDNLLTGPIPR 141
            LE   + D   +  +  
Sbjct: 427 LLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (124), Expect = 9e-09
 Identities = 11/91 (12%), Positives = 27/91 (29%), Gaps = 10/91 (10%)

Query: 53  ITAIILSNNSFVGE-IPTSIANLKGLRTLNLSTNSLQG----HIPPTLGNLIVLESLDLS 107
           I ++ +             +  L+  + + L    L       I   L     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 108 NNKLSGQIPQQLGEL-----TTLEVFDVSDN 133
           +N+L       + +        ++   + + 
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 8e-08
 Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 5/70 (7%)

Query: 77  LRTLNLSTNSLQ-GHIPPTLGNLIVLESLDLSNNKLSGQ----IPQQLGELTTLEVFDVS 131
           +++L++    L        L  L   + + L +  L+      I   L     L   ++ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 132 DNLLTGPIPR 141
            N L      
Sbjct: 64  SNELGDVGVH 73

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 6e-05
 Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 10/82 (12%)

Query: 37  LSNKGTELEYEKLSNLITAIILSNNSF----VGEIPTSIANLKGLRTLNLSTNSLQGHIP 92
           LS+         L      + L +         +I +++     L  LNL +N L     
Sbjct: 14  LSDARWAELLPLLQQC-QVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV 72

Query: 93  PTLGNLIV-----LESLDLSNN 109
             +   +      ++ L L N 
Sbjct: 73  HCVLQGLQTPSCKIQKLSLQNC 94

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 53.7 bits (127), Expect = 4e-09
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 9/75 (12%)

Query: 53  ITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLS 112
           +  + +SNN  + E+P     L+    L  S N L   +P    NL   + L +  N L 
Sbjct: 286 LEELNVSNNKLI-ELPALPPRLE---RLIASFNHLA-EVPELPQNL---KQLHVEYNPLR 337

Query: 113 GQIPQQLGELTTLEV 127
            + P     +  L +
Sbjct: 338 -EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.9 bits (125), Expect = 7e-09
 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 58  LSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQ 117
              N+   EI +       L  LN+S N L   +P        LE L  S N L+ ++P+
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPE 321

Query: 118 QLGELTTLEVFDVSDNLLTG 137
               L  L    V  N L  
Sbjct: 322 LPQNLKQL---HVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 1e-05
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 5/49 (10%)

Query: 75  KGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELT 123
           +    L L+   L   +P    +L   ESL  S N L+ ++P+    L 
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPELPQSLK 81

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 81  NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136
               N+    I         LE L++SNNKL  ++P     L  L     S N L 
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLA 317

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.7 bits (125), Expect = 7e-09
 Identities = 24/91 (26%), Positives = 32/91 (35%)

Query: 49  LSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSN 108
           L      + L NN           NLK L TL L  N +    P     L+ LE L LS 
Sbjct: 29  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 109 NKLSGQIPQQLGELTTLEVFDVSDNLLTGPI 139
           N+L     +    L  L V +     +   +
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSV 119

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.5 bits (114), Expect = 2e-07
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 2/100 (2%)

Query: 66  EIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTL 125
           ++P  +        L+L  N +         NL  L +L L NNK+S   P     L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 126 EVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLS 165
           E   +S N L     +  +     +   +    +     +
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFN 121

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 7/129 (5%)

Query: 7   NNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGE 66
           N +T ++  +   +    +   G +    +    G     +KLS     I +++ +    
Sbjct: 110 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY----IRIADTNI-TT 164

Query: 67  IPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLE 126
           IP  +     L  L+L  N +      +L  L  L  L LS N +S      L     L 
Sbjct: 165 IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 222

Query: 127 VFDVSDNLL 135
              +++N L
Sbjct: 223 ELHLNNNKL 231

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.1 bits (106), Expect = 5e-07
 Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 26/103 (25%)

Query: 58  LSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVL---------------- 101
           L++      +   +  L  +  L+LS N L+   PP L  L  L                
Sbjct: 5   LAHKDL--TVLCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENVDGV 61

Query: 102 ------ESLDLSNNKL-SGQIPQQLGELTTLEVFDVSDNLLTG 137
                 + L L NN+L      Q L     L + ++  N L  
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 7/99 (7%)

Query: 34  SLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQG-HIP 92
            L LS+         L+ L    +L  +    E    +ANL  L+ L L  N LQ     
Sbjct: 24  HLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAI 83

Query: 93  PTLGNLIVLESLDLSNNKLSG------QIPQQLGELTTL 125
             L +   L  L+L  N L        ++ + L  ++++
Sbjct: 84  QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 4e-04
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 78  RTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD 129
           R L+L+   L   +   L  L+++  LDLS+N+L    P  L  L  LEV  
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQ 49

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 6e-07
 Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 3/64 (4%)

Query: 70  SIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD 129
            ++ +     +N    +L   +PP L        L LS N L       L   T L   +
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 130 VSDN 133
           +   
Sbjct: 62  LDRA 65

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 1e-04
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 83  STNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDN 133
           + N+L       L  L  L++L L  N L   IP+       L    +  N
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 1e-04
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 45  EYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESL 104
           E  K+++ +  +     +    +P  +   K    L+LS N L      TL     L  L
Sbjct: 5   EVSKVASHLE-VNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 105 DLSNNK 110
           +L   +
Sbjct: 61  NLDRAE 66

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 1e-06
 Identities = 12/91 (13%), Positives = 34/91 (37%), Gaps = 3/91 (3%)

Query: 52  LITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKL 111
           L   + L+  +   ++   + +  G+       + +   +         ++ +DLSN+ +
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVI 58

Query: 112 SG-QIPQQLGELTTLEVFDVSDNLLTGPIPR 141
               +   L + + L+   +    L+ PI  
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVN 89

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 71  IANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDV 130
           +ANL  L TL    N +    P  L +L  L  + L NN++S   P  L   + L +  +
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

Query: 131 SD 132
           ++
Sbjct: 225 TN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 53  ITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSN 108
           +T +   +N      P  +A+L  L  ++L  N +    P  L N   L  + L+N
Sbjct: 175 LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 9e-04
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 47  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDL 106
             L+N I  I    ++    +  + A+L G+ TL+     +   I   +  L  L  L+L
Sbjct: 16  PALANAI-KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLEL 70

Query: 107 SNNKL 111
            +N++
Sbjct: 71  KDNQI 75

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 10/87 (11%)

Query: 68  PTSI------ANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGE 121
           PT+I        L     +    +++   +  T  +L  + +L      ++    + +  
Sbjct: 6   PTAINVIFPDPALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQY 61

Query: 122 LTTLEVFDVSDNLLTGPIPRGKQFNTF 148
           L  L   ++ DN +T   P        
Sbjct: 62  LNNLIGLELKDNQITDLAPLKNLTKIT 88

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 45.3 bits (105), Expect = 3e-06
 Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 5/90 (5%)

Query: 75  KGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQ----IPQQLGELTTLEVFDV 130
           K L+   ++T   +  +   L     ++ + LS N +  +    + + +     LE+ + 
Sbjct: 8   KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 131 SDNLLTGPIPRGKQFNTFGKGSFDGNPGLC 160
           SD           +       +    P L 
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLH 96

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 13/78 (16%)

Query: 58  LSNNSFVGEIPTSIAN------LKGLRTLNLSTNSLQGHIPPTL-----GNLIVLESLDL 106
           L++         ++ +        GL+TL L  N ++     TL       +  L  L+L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309

Query: 107 SNNKLS--GQIPQQLGEL 122
           + N+ S    +  ++ E+
Sbjct: 310 NGNRFSEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.7 bits (88), Expect = 4e-04
 Identities = 10/67 (14%), Positives = 26/67 (38%), Gaps = 7/67 (10%)

Query: 66  EIPTSIANLKGLRTLNLSTNSLQG----HIPPTLGNLIVLESLDLSNN---KLSGQIPQQ 118
            +   +     ++ + LS N++       +   + +   LE  + S+    ++  +IP+ 
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 119 LGELTTL 125
           L  L   
Sbjct: 82  LRLLLQA 88

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.2 bits (84), Expect = 0.001
 Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 5/48 (10%)

Query: 94  TLGNLIVLESLDLSNNKLSGQIPQQLGE-----LTTLEVFDVSDNLLT 136
           +    I L++L L  N++     + L       +  L   +++ N  +
Sbjct: 268 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 1e-05
 Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 3/79 (3%)

Query: 70  SIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD 129
              N    R L+L    +   I      L   +++D S+N++          L  L+   
Sbjct: 13  QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGF--PLLRRLKTLL 69

Query: 130 VSDNLLTGPIPRGKQFNTF 148
           V++N +        Q    
Sbjct: 70  VNNNRICRIGEGLDQALPD 88

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 3/54 (5%)

Query: 82  LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLL 135
           L+   ++        N +    LDL   K+   I      L   +  D SDN +
Sbjct: 3   LTAELIEQ--AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI 53

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 2e-05
 Identities = 9/44 (20%), Positives = 13/44 (29%)

Query: 67  IPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNK 110
                    G   L++S   +       L NL  L +    N K
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 2e-04
 Identities = 7/45 (15%), Positives = 11/45 (24%), Gaps = 1/45 (2%)

Query: 88  QGHIPP-TLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVS 131
              +P            LD+S  ++       L  L  L      
Sbjct: 189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 8e-05
 Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 2/113 (1%)

Query: 54  TAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLSNNKLS 112
           + +  + +  + +    +   + L  L +       H+    L  L  L +L +  + L 
Sbjct: 11  SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 113 GQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLS 165
              P        L   ++S N L     +  Q  +  +    GNP  C   L 
Sbjct: 70  FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALR 122

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 1e-04
 Identities = 26/139 (18%), Positives = 45/139 (32%), Gaps = 7/139 (5%)

Query: 23  PALTYYGFSYYSLTLS-NKGTELEYEKLSNL--ITAIILSNNSFVGEIPTSIANLKGLRT 79
                   +   L L  N+ + +       L  +  ++L  N      P +  +L  L T
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 80  LNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPI 139
           L L  N+L       L  L  L+ L L++N       +       L+ F  S + +   +
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPCSL 264

Query: 140 P---RGKQFNTFGKGSFDG 155
           P    G+           G
Sbjct: 265 PQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 20/88 (22%), Positives = 32/88 (36%)

Query: 53  ITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLS 112
           +  + L         P     L  L+ L L  N+LQ     T  +L  L  L L  N++S
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166

Query: 113 GQIPQQLGELTTLEVFDVSDNLLTGPIP 140
               +    L +L+   +  N +    P
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHP 194

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 3/53 (5%)

Query: 76  GLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVF 128
              T +     LQ  +P  +      + + L  N++S            L + 
Sbjct: 12  PKVTTSCPQQGLQ-AVPVGIPAAS--QRIFLHGNRISHVPAASFRACRNLTIL 61

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 4e-04
 Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 10/77 (12%)

Query: 67  IPTSI------ANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLG 120
           +PT I               NL   S+   +  T   L  ++ +  +N+ +       + 
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQ 65

Query: 121 ELTTLEVFDVSDNLLTG 137
            L  +    ++ N LT 
Sbjct: 66  YLPNVTKLFLNGNKLTD 82

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 4e-04
 Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 5/68 (7%)

Query: 47  EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDL 106
           +  +  I    L   S    +  +   L  +  +  + + ++      +  L  +  L L
Sbjct: 21  DAFAETI-KDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFL 75

Query: 107 SNNKLSGQ 114
           + NKL+  
Sbjct: 76  NGNKLTDI 83

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 70  SIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSN 108
            +A L  L+ L LS N +       L  L  L+ L+L +
Sbjct: 173 PLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.7 bits (86), Expect = 4e-04
 Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 8/69 (11%)

Query: 66  EIPTSIANLKGLRTLNLSTNSLQGHIPP------TLGNLIVLESLDLSNNKLSGQIPQQL 119
           +        K +         L G IPP      TL  L   + L LS N +  +I   L
Sbjct: 9   DAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SL 66

Query: 120 GELTTLEVF 128
             +  L + 
Sbjct: 67  SGMENLRIL 75

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.1 bits (84), Expect = 7e-04
 Identities = 16/76 (21%), Positives = 29/76 (38%)

Query: 88  QGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNT 147
           +         L  L++L+L +N++S  +P     L +L   +++ N              
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEW 150

Query: 148 FGKGSFDGNPGLCGQP 163
             K S +G    CG P
Sbjct: 151 LRKKSLNGGAARCGAP 166

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (78), Expect = 0.004
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 4/96 (4%)

Query: 34  SLTLSNKGTELEYEKLSNL--ITAIILSNN--SFVGEIPTSIANLKGLRTLNLSTNSLQG 89
            L   +           N+  + ++ LSNN    + ++ + +     L+ LNLS N L+ 
Sbjct: 46  VLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 105

Query: 90  HIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTL 125
                    + LE L L  N LS     Q   ++ +
Sbjct: 106 ERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	242
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.82
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.82
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.81
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.8
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.66
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.64
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.58
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.58
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.57
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.54
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.52
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.5
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.49
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.44
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.42
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.4
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.39
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.35
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.31
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.28
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.22
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.19
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.13
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.12
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.02
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.66
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.53
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.5
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.34
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.34
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.21
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.1
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.02
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.7
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.16
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.88
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.37

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.1e-20  Score=153.44  Aligned_cols=154  Identities=26%  Similarity=0.290  Sum_probs=118.6

Q ss_pred             CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180            1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL   80 (242)
Q Consensus         1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L   80 (242)
                      ++||++|+|+.++...|.  .+++|++|++++|.|+.++..      ..+++|+.|+|++|+++ ..+..+..+++|+.|
T Consensus        35 ~L~Ls~N~i~~l~~~~f~--~l~~L~~L~L~~N~l~~l~~~------~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L  105 (266)
T d1p9ag_          35 ILHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQVD------GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVL  105 (266)
T ss_dssp             EEECTTSCCSEEEGGGGT--TCTTCCEEECTTSCCCEEECC------SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEE
T ss_pred             EEECcCCcCCCcCHHHhh--ccccccccccccccccccccc------ccccccccccccccccc-ccccccccccccccc
Confidence            378999999999988888  889999999999988766532      22667777777777776 344455555555555


Q ss_pred             eccC------------------------CCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccc
Q 026180           81 NLST------------------------NSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT  136 (242)
Q Consensus        81 ~L~~------------------------n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~  136 (242)
                      ++++                        |.++...+..+..++.++.+++++|++++..+..|..+++|+.|+|++|.++
T Consensus       106 ~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc
Confidence            5554                        4555444555677888999999999999888888999999999999999999


Q ss_pred             cCCCCCC-CCCCcCCccccCCCCCCCCCC
Q 026180          137 GPIPRGK-QFNTFGKGSFDGNPGLCGQPL  164 (242)
Q Consensus       137 ~~~p~~~-~~~~~~~~~~~~n~~~c~~~~  164 (242)
                       .+|+.. ....+..+.+.||||.|+|..
T Consensus       186 -~lp~~~~~~~~L~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         186 -TIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             -CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             -ccChhHCCCCCCCEEEecCCCCCCCcch
Confidence             677654 456678889999999999854

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.82  E-value=3.1e-20  Score=143.53  Aligned_cols=130  Identities=18%  Similarity=0.201  Sum_probs=115.8

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEe-ecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTL-SNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL   80 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L   80 (242)
                      +|.++|++++||...+     +++++|++++|.|.. .....+.    .+++|+.|+|++|.+....+..|..+++|++|
T Consensus        13 v~Cs~~~L~~iP~~lp-----~~l~~L~Ls~N~i~~~~~~~~f~----~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L   83 (192)
T d1w8aa_          13 VDCTGRGLKEIPRDIP-----LHTTELLLNDNELGRISSDGLFG----RLPHLVKLELKRNQLTGIEPNAFEGASHIQEL   83 (192)
T ss_dssp             EECTTSCCSSCCSCCC-----TTCSEEECCSCCCCSBCCSCSGG----GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             EEEeCCCcCccCCCCC-----CCCCEEEeCCCCCcccccccccC----CCceEeeeecccccccccccccccccccccee
Confidence            6889999999998753     489999999999964 4444443    48999999999999998999999999999999


Q ss_pred             eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCC
Q 026180           81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP  140 (242)
Q Consensus        81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  140 (242)
                      +|++|+|++..|..|.++++|+.|+|++|+|++..|+.|..+++|++++|++|++.+..+
T Consensus        84 ~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_          84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             eeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccc
Confidence            999999998888899999999999999999998888899999999999999999986544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.81  E-value=2.2e-20  Score=154.68  Aligned_cols=73  Identities=40%  Similarity=0.699  Sum_probs=65.5

Q ss_pred             cCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCCCCCCCCCCCCC
Q 026180           95 LGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLSKQC  168 (242)
Q Consensus        95 ~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~~~~~c  168 (242)
                      +..+++|+.|++++|+++|.+|..++++++|++|+|++|+++|.+|....+..+..+.+.||+.+||.|++ .|
T Consensus       240 ~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence            44458889999999999999999999999999999999999999998777888888999999999998875 46

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.3e-20  Score=151.69  Aligned_cols=162  Identities=14%  Similarity=0.110  Sum_probs=97.6

Q ss_pred             CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchh---------------------hHHHhhcCccEEEcc
Q 026180            1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTEL---------------------EYEKLSNLITAIILS   59 (242)
Q Consensus         1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~---------------------~~~~~~~~L~~L~Ls   59 (242)
                      ++||++|+|+.++...|.  .+++|++|++++|.+..+....+.                     ..++.+++|+.|+++
T Consensus        36 ~L~Ls~N~i~~i~~~~f~--~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~  113 (284)
T d1ozna_          36 RIFLHGNRISHVPAASFR--ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD  113 (284)
T ss_dssp             EEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred             EEECcCCcCCCCCHHHhh--ccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecC
Confidence            378899999999988888  888899999988877655443211                     112223455555555


Q ss_pred             CCCCc------------------------cCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCC
Q 026180           60 NNSFV------------------------GEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQI  115 (242)
Q Consensus        60 ~n~i~------------------------~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~  115 (242)
                      +|.+.                        +..+..|..+++|+.|++++|++++..+..|.++++|+.+++++|++++..
T Consensus       114 ~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~  193 (284)
T d1ozna_         114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH  193 (284)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccC
Confidence            55544                        333444445555555555555555444555555555555555555555555


Q ss_pred             cccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCCCCCCCCC
Q 026180          116 PQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNPGLCGQPL  164 (242)
Q Consensus       116 p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~~~c~~~~  164 (242)
                      |..|..+++|++|++++|.+.+..|... ....+..+.+++||+.|+|+.
T Consensus       194 ~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             hhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc
Confidence            5555666666666666666654333221 234456667788888887754

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=1.3e-17  Score=128.51  Aligned_cols=133  Identities=20%  Similarity=0.235  Sum_probs=112.4

Q ss_pred             CcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCcc-CcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCE
Q 026180           25 LTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVG-EIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLES  103 (242)
Q Consensus        25 L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  103 (242)
                      .+.++.+++.++.++.+.       +..++.|+|++|.|++ ..+..|..+++|+.|++++|.+....+..|..+++|+.
T Consensus        10 ~~~v~Cs~~~L~~iP~~l-------p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~   82 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDI-------PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE   82 (192)
T ss_dssp             TTEEECTTSCCSSCCSCC-------CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             CCEEEEeCCCcCccCCCC-------CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccce
Confidence            345666666666554433       5679999999999986 45677899999999999999999899999999999999


Q ss_pred             EeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCCCCCCCCC
Q 026180          104 LDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNPGLCGQPL  164 (242)
Q Consensus       104 L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~~~c~~~~  164 (242)
                      |++++|++++..|+.|.++++|+.|+|++|++++..|... .+..+..+.+.+|++.|+|..
T Consensus        83 L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~  144 (192)
T d1w8aa_          83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             eeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccch
Confidence            9999999998888899999999999999999997666543 466778889999999998754

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=8.6e-17  Score=131.07  Aligned_cols=134  Identities=22%  Similarity=0.188  Sum_probs=119.2

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      ++|++|.+..++...+.  ...+|+.+++++|.|+.+....+    +..+.|+.|++++|++++..+..|.++++|+.++
T Consensus       110 L~l~~n~~~~~~~~~~~--~~~~L~~l~l~~N~l~~i~~~~f----~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~  183 (284)
T d1ozna_         110 LHLDRCGLQELGPGLFR--GLAALQYLYLQDNALQALPDDTF----RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL  183 (284)
T ss_dssp             EECTTSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             EecCCcccccccccccc--hhcccchhhhccccccccChhHh----ccccchhhcccccCcccccchhhhccccccchhh
Confidence            57888888888887777  77888888998888877665544    3378899999999999988889999999999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPR  141 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  141 (242)
                      +++|++++..|..|..+++|+.|++++|.+.+..|..|..+++|+++++++|++.+.++.
T Consensus       184 l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             hhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc
Confidence            999999999999999999999999999999988888999999999999999999987653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.6e-16  Score=125.64  Aligned_cols=133  Identities=22%  Similarity=0.150  Sum_probs=99.6

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCc-------------------hhhHHHhhcCccEEEccCCC
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGT-------------------ELEYEKLSNLITAIILSNNS   62 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-------------------~~~~~~~~~~L~~L~Ls~n~   62 (242)
                      ++|++|+|+.++..  .  .+++|++|++++|.+.......                   ....+..+..++.|++++|.
T Consensus        60 L~L~~N~l~~l~~~--~--~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~  135 (266)
T d1p9ag_          60 LNLDRAELTKLQVD--G--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE  135 (266)
T ss_dssp             EECTTSCCCEEECC--S--CCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred             cccccccccccccc--c--ccccccccccccccccccccccccccccccccccccccceeeccccccccccccccccccc
Confidence            45666666666542  2  4555666666555543322110                   11112336677888888888


Q ss_pred             CccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCC
Q 026180           63 FVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPI  139 (242)
Q Consensus        63 i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~  139 (242)
                      ++...+..+..++.++.+++++|++++..+..|..+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|++.+.+
T Consensus       136 l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (266)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             cceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCc
Confidence            88777777888999999999999999888888999999999999999999 78888889999999999999998754

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=5.7e-15  Score=105.60  Aligned_cols=85  Identities=31%  Similarity=0.394  Sum_probs=63.9

Q ss_pred             hcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCC-cccccCCCcccEE
Q 026180           50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQI-PQQLGELTTLEVF  128 (242)
Q Consensus        50 ~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L  128 (242)
                      +..|+.|++++|.|+ .+|..++.+++|+.|++++|+|+ .+| .+..+++|+.+++++|+++... ...+..+++|+.+
T Consensus        19 l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L   95 (124)
T d1dcea3          19 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL   95 (124)
T ss_dssp             GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred             CCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEE
Confidence            566788888888887 56667778888888888888887 344 3778888888888888887432 2457778888888


Q ss_pred             ecCCCcccc
Q 026180          129 DVSDNLLTG  137 (242)
Q Consensus       129 ~l~~N~l~~  137 (242)
                      ++++|+++.
T Consensus        96 ~l~~N~i~~  104 (124)
T d1dcea3          96 NLQGNSLCQ  104 (124)
T ss_dssp             ECTTSGGGG
T ss_pred             ECCCCcCCc
Confidence            888888763

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.58  E-value=2.5e-15  Score=123.32  Aligned_cols=81  Identities=28%  Similarity=0.360  Sum_probs=40.0

Q ss_pred             EEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCc
Q 026180           55 AIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNL  134 (242)
Q Consensus        55 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~  134 (242)
                      .|++++|.+++..+..|..++.++.|++++|.+++..+..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|+
T Consensus       175 ~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~  253 (305)
T d1xkua_         175 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN  253 (305)
T ss_dssp             EEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSC
T ss_pred             EEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCc
Confidence            3333333333333444444445555555555555444444555555555555555555 334455555555555555555


Q ss_pred             cc
Q 026180          135 LT  136 (242)
Q Consensus       135 l~  136 (242)
                      ++
T Consensus       254 i~  255 (305)
T d1xkua_         254 IS  255 (305)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=8.9e-16  Score=115.02  Aligned_cols=122  Identities=19%  Similarity=0.127  Sum_probs=81.1

Q ss_pred             cCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEecc
Q 026180            4 VNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLS   83 (242)
Q Consensus         4 Ls~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~   83 (242)
                      |+.|.|...+.  |.  ....+++|++++|.|+.++. ..    ..+++|+.|+|++|.|+. ++ .|..+++|++|+++
T Consensus         3 Lt~~~i~~~~~--~~--n~~~lr~L~L~~n~I~~i~~-~~----~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls   71 (162)
T d1a9na_           3 LTAELIEQAAQ--YT--NAVRDRELDLRGYKIPVIEN-LG----ATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVN   71 (162)
T ss_dssp             CCHHHHHTSCE--EE--CTTSCEEEECTTSCCCSCCC-GG----GGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECC
T ss_pred             CCHHHHhhhHh--cc--CcCcCcEEECCCCCCCccCc-cc----cccccCCEEECCCCCCCc-cC-CcccCcchhhhhcc
Confidence            44455555544  22  45567778888777776642 22    236777888888888773 33 36777788888888


Q ss_pred             CCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCc-ccccCCCcccEEecCCCccc
Q 026180           84 TNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIP-QQLGELTTLEVFDVSDNLLT  136 (242)
Q Consensus        84 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~  136 (242)
                      +|+++...+..+..+++|+.|++++|+++.... ..+..+++|+.+++++|+++
T Consensus        72 ~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          72 NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             SSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccc
Confidence            888875555555667788888888888773311 35667778888888888776

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.54  E-value=1.7e-14  Score=118.19  Aligned_cols=150  Identities=19%  Similarity=0.175  Sum_probs=92.7

Q ss_pred             CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCc-------------
Q 026180            1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEI-------------   67 (242)
Q Consensus         1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~-------------   67 (242)
                      ++||++|+|+++++..|.  .+++|++|++++|.+..+....+..    ++.|+.|++++|+++...             
T Consensus        35 ~L~Ls~N~i~~l~~~~f~--~l~~L~~L~l~~n~~~~i~~~~f~~----l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~  108 (305)
T d1xkua_          35 LLDLQNNKITEIKDGDFK--NLKNLHTLILINNKISKISPGAFAP----LVKLERLYLSKNQLKELPEKMPKTLQELRVH  108 (305)
T ss_dssp             EEECCSSCCCCBCTTTTT--TCTTCCEEECCSSCCCCBCTTTTTT----CTTCCEEECCSSCCSBCCSSCCTTCCEEECC
T ss_pred             EEECcCCcCCCcChhHhh--ccccccccccccccccccchhhhhC----CCccCEecccCCccCcCccchhhhhhhhhcc
Confidence            367888888888877777  7778888888777776654443322    555555555555543110             


Q ss_pred             ----------------------------------chhccC---------------------CCCCCEEeccCCCCCCCCC
Q 026180           68 ----------------------------------PTSIAN---------------------LKGLRTLNLSTNSLQGHIP   92 (242)
Q Consensus        68 ----------------------------------p~~~~~---------------------l~~L~~L~L~~n~l~~~~p   92 (242)
                                                        +..+..                     +++|+.|++++|.+.+..+
T Consensus       109 ~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~  188 (305)
T d1xkua_         109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDA  188 (305)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECT
T ss_pred             ccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCCCCh
Confidence                                              011222                     3344555555555555555


Q ss_pred             cccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCC
Q 026180           93 PTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNP  157 (242)
Q Consensus        93 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~  157 (242)
                      ..+..++.++.|++++|.+++..+..+..+++|+.|+|++|.++ .+|... .+..+..+.+.+|.
T Consensus       189 ~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~  253 (305)
T d1xkua_         189 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN  253 (305)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSC
T ss_pred             hHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCc
Confidence            66666677777777777777666677777777777777777777 445432 34566666666664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.2e-14  Score=105.68  Aligned_cols=109  Identities=17%  Similarity=0.148  Sum_probs=65.3

Q ss_pred             cEEEccCCCCccCcchhccCCCCCCEEeccCC-CCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCC
Q 026180           54 TAIILSNNSFVGEIPTSIANLKGLRTLNLSTN-SLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSD  132 (242)
Q Consensus        54 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~  132 (242)
                      +.++.+++++. ..|..+..+++|++|++++| .++...+..|.++++|+.|++++|+|+...|..|..+++|+.|+|++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            44566666665 45555666666666666544 36655555666666666666666666655566666666666666666


Q ss_pred             CccccCCCCCCCCCCcCCccccCCCCCCCCC
Q 026180          133 NLLTGPIPRGKQFNTFGKGSFDGNPGLCGQP  163 (242)
Q Consensus       133 N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~  163 (242)
                      |+++...+.......+..+.+++||+.|+|.
T Consensus        90 N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~  120 (156)
T d2ifga3          90 NALESLSWKTVQGLSLQELVLSGNPLHCSCA  120 (156)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred             CCCcccChhhhccccccccccCCCcccCCch
Confidence            6666332222223345556666677666663

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.2e-15  Score=111.95  Aligned_cols=118  Identities=18%  Similarity=0.167  Sum_probs=85.0

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +||++|+|+.|+. .+.  .+++|++|++++|.|..++.  +    ..+++|+.|++++|+++...+..+..+++|+.|+
T Consensus        23 L~L~~n~I~~i~~-~~~--~l~~L~~L~Ls~N~i~~l~~--~----~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          23 LDLRGYKIPVIEN-LGA--TLDQFDAIDFSDNEIRKLDG--F----PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             EECTTSCCCSCCC-GGG--GTTCCSEEECCSSCCCEECC--C----CCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             EECCCCCCCccCc-ccc--ccccCCEEECCCCCCCccCC--c----ccCcchhhhhcccccccCCCccccccccccccce
Confidence            6788888888864 444  67788888888888876632  1    2367888888888888865555666788888888


Q ss_pred             ccCCCCCCCCC-cccCCCCCCCEEeCCCCCCCCCCcc----cccCCCcccEEe
Q 026180           82 LSTNSLQGHIP-PTLGNLIVLESLDLSNNKLSGQIPQ----QLGELTTLEVFD  129 (242)
Q Consensus        82 L~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~----~~~~l~~L~~L~  129 (242)
                      +++|+++.... ..+..+++|+.+++++|.++ ..|.    .+..+++|+.||
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             eccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            88888873321 35677888888888888887 3343    466778888776

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.49  E-value=1.2e-14  Score=119.67  Aligned_cols=134  Identities=27%  Similarity=0.443  Sum_probs=95.5

Q ss_pred             cccCCCCCcc---cCCCCCCCCCCCCCcccceee-eEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCC
Q 026180            2 KDVNANNLTY---LQDPLLGPVRYPALTYYGFSY-YSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGL   77 (242)
Q Consensus         2 ~dLs~N~i~~---l~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L   77 (242)
                      +||++|++..   ||.. +.  .+++|++|++++ |.+...   . +.....+++|+.|+|++|++.+..+..+..+..|
T Consensus        55 L~L~~~~l~g~~~lp~~-l~--~L~~L~~L~Ls~~N~l~g~---i-P~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L  127 (313)
T d1ogqa_          55 LDLSGLNLPKPYPIPSS-LA--NLPYLNFLYIGGINNLVGP---I-PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             EEEECCCCSSCEECCGG-GG--GCTTCSEEEEEEETTEESC---C-CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             EECCCCCCCCCCCCChH-Hh--cCccccccccccccccccc---c-ccccccccccchhhhccccccccccccccchhhh
Confidence            5777777763   5543 33  677888888875 555511   1 1122346778888888888887777777778888


Q ss_pred             CEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcc-cEEecCCCccccCCCCC
Q 026180           78 RTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTL-EVFDVSDNLLTGPIPRG  142 (242)
Q Consensus        78 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L-~~L~l~~N~l~~~~p~~  142 (242)
                      +.+++++|.+.+.+|..+..++.++.+++++|.+++.+|..+..+..+ +.+++++|.+++..|..
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~  193 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT  193 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred             cccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccc
Confidence            888888888877778788888888888888888887777777777665 77777888877766644

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=1.6e-13  Score=105.80  Aligned_cols=139  Identities=27%  Similarity=0.314  Sum_probs=108.0

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +++++|+|++++.  +.  .+++|++|++++|.++....      ...+++|+.|++++|.+.. ++ .+..++.|+.|+
T Consensus        45 L~l~~~~i~~l~~--l~--~l~nL~~L~Ls~N~l~~~~~------l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          45 LQADRLGIKSIDG--VE--YLNNLTQINFSNNQLTDITP------LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLT  112 (199)
T ss_dssp             EECTTSCCCCCTT--GG--GCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEE
T ss_pred             EECCCCCCCCccc--cc--cCCCcCcCccccccccCccc------ccCCccccccccccccccc-cc-cccccccccccc
Confidence            6889999999875  34  78899999999998765431      3457889999999999884 44 378899999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNP  157 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~  157 (242)
                      +++|.+...  +.+..+++|+.|++++|++.. ++ .+..+++|+.|++.+|.+++. +.-..+..+..+.+.+|.
T Consensus       113 l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l-~~l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         113 LFNNQITDI--DPLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTDL-KPLANLTTLERLDISSNK  183 (199)
T ss_dssp             CCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC-GGGTTCTTCCEEECCSSC
T ss_pred             ccccccccc--cccchhhhhHHhhhhhhhhcc-cc-cccccccccccccccccccCC-ccccCCCCCCEEECCCCC
Confidence            999988743  347788999999999999873 33 578889999999999998853 333445667777777775

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=3e-13  Score=96.48  Aligned_cols=100  Identities=23%  Similarity=0.301  Sum_probs=82.9

Q ss_pred             cEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCC
Q 026180           54 TAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDN  133 (242)
Q Consensus        54 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N  133 (242)
                      +.|+|++|+++ .++. +..++.|++|++++|+++ .+|+.+..+++|+.|++++|.++. +| .+..+++|+.+++++|
T Consensus         1 R~L~Ls~n~l~-~l~~-l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCcc-cccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            57999999999 5554 789999999999999999 678889999999999999999995 45 4899999999999999


Q ss_pred             ccccCCC--CCCCCCCcCCccccCCCC
Q 026180          134 LLTGPIP--RGKQFNTFGKGSFDGNPG  158 (242)
Q Consensus       134 ~l~~~~p--~~~~~~~~~~~~~~~n~~  158 (242)
                      +++....  ....+..+..+.+.||+.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcC
Confidence            9984322  112345667778888874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.42  E-value=3.9e-13  Score=103.55  Aligned_cols=137  Identities=24%  Similarity=0.315  Sum_probs=91.1

Q ss_pred             ccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEec
Q 026180            3 DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNL   82 (242)
Q Consensus         3 dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L   82 (242)
                      +++.+.+++.....    .+.++++|++++|.|...+.      ...+++|+.|++++|++++..|  +..+++|++|++
T Consensus        24 ~l~~~~~~~~~~~~----~l~~l~~L~l~~~~i~~l~~------l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l   91 (199)
T d2omxa2          24 VLGKTNVTDTVSQT----DLDQVTTLQADRLGIKSIDG------VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILM   91 (199)
T ss_dssp             HTTCSSTTSEECHH----HHTTCCEEECTTSCCCCCTT------GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             HhCCCCCCCccCHH----HhcCCCEEECCCCCCCCccc------cccCCCcCcCccccccccCccc--ccCCcccccccc
Confidence            35556666544322    56778888888877765431      1237788888888888885433  778888888888


Q ss_pred             cCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCC
Q 026180           83 STNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGN  156 (242)
Q Consensus        83 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n  156 (242)
                      ++|.+. .++. +..++.|+.|++++|.+...  ..+..+++|+.+++++|.+.. ++.......+..+.+.+|
T Consensus        92 ~~n~~~-~~~~-l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n  160 (199)
T d2omxa2          92 NNNQIA-DITP-LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-ISALSGLTSLQQLNFSSN  160 (199)
T ss_dssp             CSSCCC-CCGG-GTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSS
T ss_pred             cccccc-cccc-cccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-cccccccccccccccccc
Confidence            888877 4443 77788888888888877743  346778888888888888763 343333444555555555

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1e-12  Score=97.37  Aligned_cols=89  Identities=20%  Similarity=0.180  Sum_probs=74.8

Q ss_pred             hcCccEEEccCC-CCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEE
Q 026180           50 SNLITAIILSNN-SFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVF  128 (242)
Q Consensus        50 ~~~L~~L~Ls~n-~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L  128 (242)
                      +++|+.|++++| .++...+.+|.++++|+.|++++|+|+...+..|..+++|+.|+|++|+++...++.+.. ..|+.|
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L  108 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQEL  108 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEE
T ss_pred             ccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcc-cccccc
Confidence            567899999766 488777788999999999999999999888888999999999999999999555555554 469999


Q ss_pred             ecCCCccccCC
Q 026180          129 DVSDNLLTGPI  139 (242)
Q Consensus       129 ~l~~N~l~~~~  139 (242)
                      +|++|++.+..
T Consensus       109 ~L~~Np~~C~C  119 (156)
T d2ifga3         109 VLSGNPLHCSC  119 (156)
T ss_dssp             ECCSSCCCCCG
T ss_pred             ccCCCcccCCc
Confidence            99999997543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.39  E-value=4.5e-13  Score=104.11  Aligned_cols=139  Identities=24%  Similarity=0.252  Sum_probs=105.7

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +++++|.|+.++.  +.  .+++|++|++++|.|+....      .+.+++|+.|++++|+++. +| .+..+++|+.|+
T Consensus        51 L~l~~~~i~~l~~--l~--~l~~L~~L~L~~n~i~~l~~------~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          51 IIANNSDIKSVQG--IQ--YLPNVTKLFLNGNKLTDIKP------LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (210)
T ss_dssp             EECTTSCCCCCTT--GG--GCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             EECcCCCCCCchh--Hh--hCCCCCEEeCCCccccCccc------cccCccccccccccccccc-cc-cccccccccccc
Confidence            6889999999875  34  78899999999998765431      2358899999999999984 45 478899999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNP  157 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~  157 (242)
                      +++|.+. .+ +.+..++.++.++++.|.++.  +..+..+++|+.+++++|++++. +.-..+.++..+.+.+|.
T Consensus       119 l~~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~~l~~l~~L~~L~Ls~N~  189 (210)
T d1h6ta2         119 LEHNGIS-DI-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNH  189 (210)
T ss_dssp             CTTSCCC-CC-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-GGGTTCTTCCEEECCSSC
T ss_pred             ccccccc-cc-ccccccccccccccccccccc--ccccccccccccccccccccccc-ccccCCCCCCEEECCCCC
Confidence            9999887 33 347788888888888888874  33567788888888888888753 333345566667777774

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.35  E-value=1.7e-12  Score=100.68  Aligned_cols=103  Identities=26%  Similarity=0.317  Sum_probs=54.2

Q ss_pred             CCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCC
Q 026180           22 YPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVL  101 (242)
Q Consensus        22 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  101 (242)
                      +.+|++|++++|.++....      ...+++|+.|+|++|.|++..+  +..+++|++|++++|+++ .+| .+..+++|
T Consensus        45 L~~L~~L~l~~~~i~~l~~------l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L  114 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQG------IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLS-SLKDLKKL  114 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTT------GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGG-GGTTCTTC
T ss_pred             hcCccEEECcCCCCCCchh------HhhCCCCCEEeCCCccccCccc--cccCcccccccccccccc-ccc-cccccccc
Confidence            4455556655555543221      1225556666666666653222  345566666666666665 233 35555666


Q ss_pred             CEEeCCCCCCCCCCcccccCCCcccEEecCCCccc
Q 026180          102 ESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT  136 (242)
Q Consensus       102 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~  136 (242)
                      +.|++++|.+.. + ..+..++.++.+++++|.++
T Consensus       115 ~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~  147 (210)
T d1h6ta2         115 KSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKIT  147 (210)
T ss_dssp             CEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCC
T ss_pred             cccccccccccc-c-cccccccccccccccccccc
Confidence            666666665542 2 23555556666666666555

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.31  E-value=2.1e-12  Score=108.08  Aligned_cols=140  Identities=21%  Similarity=0.279  Sum_probs=81.7

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcc-------------
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIP-------------   68 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p-------------   68 (242)
                      +++++|++++++.  +.  .+++|+.|++++|.+.....      ...+++|+.|++++|.+++..+             
T Consensus       224 L~l~~n~l~~~~~--l~--~l~~L~~L~l~~n~l~~~~~------~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~  293 (384)
T d2omza2         224 LSLNGNQLKDIGT--LA--SLTNLTDLDLANNQISNLAP------LSGLTKLTELKLGANQISNISPLAGLTALTNLELN  293 (384)
T ss_dssp             EECCSSCCCCCGG--GG--GCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred             EECCCCCCCCcch--hh--cccccchhccccCccCCCCc------ccccccCCEeeccCcccCCCCcccccccccccccc
Confidence            4677777777653  33  66777777777776553221      2235667777777766663321             


Q ss_pred             -------hhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCC
Q 026180           69 -------TSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPR  141 (242)
Q Consensus        69 -------~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  141 (242)
                             ..+..+++++.|++++|++++. + .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++++..| 
T Consensus       294 ~n~l~~~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~-  368 (384)
T d2omza2         294 ENQLEDISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP-  368 (384)
T ss_dssp             SSCCSCCGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG-
T ss_pred             ccccccccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh-
Confidence                   2244556666666666666643 2 25666677777777777663 33 46667777777777777665433 


Q ss_pred             CCCCCCcCCccccCC
Q 026180          142 GKQFNTFGKGSFDGN  156 (242)
Q Consensus       142 ~~~~~~~~~~~~~~n  156 (242)
                      -..+..+..+.+.+|
T Consensus       369 l~~l~~L~~L~L~~N  383 (384)
T d2omza2         369 LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GTTCTTCSEEECCCE
T ss_pred             hccCCCCCEeeCCCC
Confidence            223334444444433

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.28  E-value=3.6e-12  Score=106.68  Aligned_cols=123  Identities=20%  Similarity=0.271  Sum_probs=94.7

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCC---------------c-hhhHHHhhcCccEEEccCCCCcc
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKG---------------T-ELEYEKLSNLITAIILSNNSFVG   65 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---------------~-~~~~~~~~~~L~~L~Ls~n~i~~   65 (242)
                      +++++|+++.+++  +.  .+++|+.|+++.+.+......               . .......+..++.|++++|++++
T Consensus       246 L~l~~n~l~~~~~--~~--~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~  321 (384)
T d2omza2         246 LDLANNQISNLAP--LS--GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD  321 (384)
T ss_dssp             EECCSSCCCCCGG--GT--TCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSC
T ss_pred             hccccCccCCCCc--cc--ccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCC
Confidence            5677888887775  33  667788888877765533210               0 01113446789999999999996


Q ss_pred             CcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCc
Q 026180           66 EIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNL  134 (242)
Q Consensus        66 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~  134 (242)
                      ..+  +..+++|++|++++|++++ ++ .+..+++|+.|++++|++++..|  +.++++|+.|++++|.
T Consensus       322 l~~--l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         322 ISP--VSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             CGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred             Ccc--cccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCCc
Confidence            543  7889999999999999984 44 58999999999999999997654  8999999999999873

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=4.1e-14  Score=109.21  Aligned_cols=112  Identities=21%  Similarity=0.171  Sum_probs=90.6

Q ss_pred             CCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCC
Q 026180           21 RYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIV  100 (242)
Q Consensus        21 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  100 (242)
                      .+++|++|++++|.|+.++.      ...+++|+.|+|++|.|+ .+|..+..++.|+.|++++|+++. ++ .+..+++
T Consensus        46 ~L~~L~~L~Ls~n~I~~i~~------l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~-~~~~l~~  116 (198)
T d1m9la_          46 TLKACKHLALSTNNIEKISS------LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN  116 (198)
T ss_dssp             HTTTCCEEECSEEEESCCCC------HHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH-HHHHHHH
T ss_pred             cccccceeECcccCCCCccc------ccCCccccChhhcccccc-cccccccccccccccccccccccc-cc-ccccccc
Confidence            68899999999999986531      245889999999999998 566666667789999999999984 33 4778899


Q ss_pred             CCEEeCCCCCCCCCCc-ccccCCCcccEEecCCCccccCCCC
Q 026180          101 LESLDLSNNKLSGQIP-QQLGELTTLEVFDVSDNLLTGPIPR  141 (242)
Q Consensus       101 L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~  141 (242)
                      |+.|++++|+++.... ..+..+++|+.|++++|++....+.
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  158 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCT
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCccccCccc
Confidence            9999999999984422 4688999999999999998755443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.22  E-value=1.2e-11  Score=96.79  Aligned_cols=141  Identities=21%  Similarity=0.260  Sum_probs=95.1

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +++++|+|++++.  +.  .+++|++|++++|.+....      ....+..++.+++++|.++ .++ .+..++.|++++
T Consensus        46 L~l~~~~i~~l~~--l~--~l~~L~~L~ls~n~i~~~~------~l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~  113 (227)
T d1h6ua2          46 LSAFGTGVTTIEG--VQ--YLNNLIGLELKDNQITDLA------PLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLD  113 (227)
T ss_dssp             EECTTSCCCCCTT--GG--GCTTCCEEECCSSCCCCCG------GGTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEE
T ss_pred             EECCCCCCCcchh--Hh--cCCCCcEeecCCceeeccc------ccccccccccccccccccc-ccc-cccccccccccc
Confidence            5788899988854  44  7889999999988776432      1344677888888888777 333 356777777777


Q ss_pred             ccCCCCCCCCC--------------------cccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCC
Q 026180           82 LSTNSLQGHIP--------------------PTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPR  141 (242)
Q Consensus        82 L~~n~l~~~~p--------------------~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  141 (242)
                      ++++...+..+                    ..+..+++|+.|++++|.++...  .+.++++|+.|++++|++++ ++.
T Consensus       114 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~~  190 (227)
T d1h6ua2         114 LTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-ISP  190 (227)
T ss_dssp             CTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGG
T ss_pred             cccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccch--hhcccccceecccCCCccCC-Chh
Confidence            77776543211                    12445677888888888877432  37778888888888888774 343


Q ss_pred             CCCCCCcCCccccCCC
Q 026180          142 GKQFNTFGKGSFDGNP  157 (242)
Q Consensus       142 ~~~~~~~~~~~~~~n~  157 (242)
                      -..+..+..+.+.+|.
T Consensus       191 l~~l~~L~~L~Ls~N~  206 (227)
T d1h6ua2         191 LASLPNLIEVHLKNNQ  206 (227)
T ss_dssp             GGGCTTCCEEECTTSC
T ss_pred             hcCCCCCCEEECcCCc
Confidence            3345566666666663

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.19  E-value=3.7e-11  Score=93.90  Aligned_cols=60  Identities=27%  Similarity=0.411  Sum_probs=29.3

Q ss_pred             CCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccc
Q 026180           73 NLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT  136 (242)
Q Consensus        73 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~  136 (242)
                      ..++|++|++++|.+.+. + .+..+++|+.|++++|++++ ++ .+..+++|++|++++|+++
T Consensus       149 ~~~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         149 GLTNLQYLSIGNAQVSDL-T-PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             GCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCC
T ss_pred             cccccccccccccccccc-h-hhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCC
Confidence            344455555555555421 1 14455555555555555543 22 2445555555555555554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.13  E-value=6.3e-13  Score=102.41  Aligned_cols=105  Identities=24%  Similarity=0.280  Sum_probs=59.2

Q ss_pred             HhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccE
Q 026180           48 KLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEV  127 (242)
Q Consensus        48 ~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~  127 (242)
                      ..+++|+.|+|++|+|+. ++ .+..+++|+.|++++|+|+ .+|..+..+++|+.|++++|+++..  ..+..+++|+.
T Consensus        45 ~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~  119 (198)
T d1m9la_          45 STLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRV  119 (198)
T ss_dssp             HHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHSSE
T ss_pred             hcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--ccccccccccc
Confidence            345666666666666663 33 3566666666666666666 4444444445666666666666632  23555666666


Q ss_pred             EecCCCccccCC--CCCCCCCCcCCccccCCC
Q 026180          128 FDVSDNLLTGPI--PRGKQFNTFGKGSFDGNP  157 (242)
Q Consensus       128 L~l~~N~l~~~~--p~~~~~~~~~~~~~~~n~  157 (242)
                      |++++|.++...  ..-..+..+..+.+.|||
T Consensus       120 L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             EEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cccccchhccccccccccCCCccceeecCCCc
Confidence            666666665321  111223445555566664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=4.6e-11  Score=94.00  Aligned_cols=126  Identities=17%  Similarity=0.117  Sum_probs=81.5

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccC-cchhccCCCCCCEE
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGE-IPTSIANLKGLRTL   80 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~-~p~~~~~l~~L~~L   80 (242)
                      ++.+++.++++|...+     .++++|++++|.|+.++.+.+..    +++|++|++++|.+... .+..|..++.++++
T Consensus        13 i~c~~~~l~~iP~~l~-----~~l~~L~Ls~n~i~~l~~~~f~~----l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l   83 (242)
T d1xwdc1          13 FLCQESKVTEIPSDLP-----RNAIELRFVLTKLRVIQKGAFSG----FGDLEKIEISQNDVLEVIEADVFSNLPKLHEI   83 (242)
T ss_dssp             EEEESCSCSSCCSCSC-----SCCSEEEEESCCCCEECTTTTTT----CTTCCEEEEESCTTCCEECSSSEESCTTCCEE
T ss_pred             EEEeCCCCCCcCCCCC-----CCCCEEECcCCcCCccChhHhhc----cchhhhhhhccccccceeeccccccccccccc
Confidence            3556677778877553     36788888888877766555433    77788888888877643 34467777788877


Q ss_pred             ecc-CCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcc-cccCCCcccEEecCCCccc
Q 026180           81 NLS-TNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQ-QLGELTTLEVFDVSDNLLT  136 (242)
Q Consensus        81 ~L~-~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~l~~L~~L~l~~N~l~  136 (242)
                      ++. .|.+....+..|..+++|+.+++++|.+....+. .+..+..+..+..+++.+.
T Consensus        84 ~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~  141 (242)
T d1xwdc1          84 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH  141 (242)
T ss_dssp             EEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCC
T ss_pred             cccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccc
Confidence            765 4667766677777788888888888877633221 2223344444444554444

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=4.1e-10  Score=88.37  Aligned_cols=134  Identities=12%  Similarity=0.014  Sum_probs=96.6

Q ss_pred             CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEe-ecCCchhhHHHhhcCccEEEcc-CCCCccCcchhccCCCCCC
Q 026180            1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTL-SNKGTELEYEKLSNLITAIILS-NNSFVGEIPTSIANLKGLR   78 (242)
Q Consensus         1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~L~~L~Ls-~n~i~~~~p~~~~~l~~L~   78 (242)
                      ++||++|+|+.++...|.  .+++|++|++++|.+.. ++...+.    .+..++.+++. .|.+....+..|.++++|+
T Consensus        33 ~L~Ls~n~i~~l~~~~f~--~l~~L~~L~ls~n~~~~~i~~~~f~----~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~  106 (242)
T d1xwdc1          33 ELRFVLTKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEADVFS----NLPKLHEIRIEKANNLLYINPEAFQNLPNLQ  106 (242)
T ss_dssp             EEEEESCCCCEECTTTTT--TCTTCCEEEEESCTTCCEECSSSEE----SCTTCCEEEEECCTTCCEECTTSEECCTTCC
T ss_pred             EEECcCCcCCccChhHhh--ccchhhhhhhccccccceeeccccc----ccccccccccccccccccccccccccccccc
Confidence            368899999999988888  88899999998886543 3433333    26777888765 4677777778888999999


Q ss_pred             EEeccCCCCCCCCCc-ccCCCCCCCEEeCCCCCCCCCCcccccCCC-cccEEecCCCccccCCC
Q 026180           79 TLNLSTNSLQGHIPP-TLGNLIVLESLDLSNNKLSGQIPQQLGELT-TLEVFDVSDNLLTGPIP  140 (242)
Q Consensus        79 ~L~L~~n~l~~~~p~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~-~L~~L~l~~N~l~~~~p  140 (242)
                      .+++++|.+....+. .+..+..+..+..+++.+....+..+..++ .+..+++++|.++...+
T Consensus       107 ~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~  170 (242)
T d1xwdc1         107 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN  170 (242)
T ss_dssp             EEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccccc
Confidence            999999988743332 234455666666677777755556666654 78888999888874433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.87  E-value=1.1e-08  Score=83.66  Aligned_cols=92  Identities=27%  Similarity=0.334  Sum_probs=70.9

Q ss_pred             cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180            2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN   81 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~   81 (242)
                      +||++|.|+++|+      ..++|++|++++|.|+.++.        .+.+|+.|++++|+++ .+++.   .+.|++|+
T Consensus        43 LdLs~~~L~~lp~------~~~~L~~L~Ls~N~l~~lp~--------~~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~  104 (353)
T d1jl5a_          43 LELNNLGLSSLPE------LPPHLESLVASCNSLTELPE--------LPQSLKSLLVDNNNLK-ALSDL---PPLLEYLG  104 (353)
T ss_dssp             EECTTSCCSCCCS------CCTTCSEEECCSSCCSSCCC--------CCTTCCEEECCSSCCS-CCCSC---CTTCCEEE
T ss_pred             EEeCCCCCCCCCC------CCCCCCEEECCCCCCccccc--------chhhhhhhhhhhcccc-hhhhh---cccccccc
Confidence            6899999999985      34689999999988875432        2567899999999888 44432   24688999


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCC
Q 026180           82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSG  113 (242)
Q Consensus        82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~  113 (242)
                      +++|.+. .+|. ++.+++|+.|++++|.++.
T Consensus       105 L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~  134 (353)
T d1jl5a_         105 VSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK  134 (353)
T ss_dssp             CCSSCCS-SCCC-CTTCTTCCEEECCSSCCSC
T ss_pred             ccccccc-cccc-hhhhccceeeccccccccc
Confidence            9999988 5564 5778899999998888763

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.66  E-value=4.4e-08  Score=79.93  Aligned_cols=99  Identities=25%  Similarity=0.367  Sum_probs=77.8

Q ss_pred             CCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCC
Q 026180           23 PALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLE  102 (242)
Q Consensus        23 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  102 (242)
                      .++++|+++++.++.++.        .+++|+.|+|++|+|+ .+|..   +.+|+.|++++|+++ .++..   .+.|+
T Consensus        38 ~~l~~LdLs~~~L~~lp~--------~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~  101 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPE--------LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLE  101 (353)
T ss_dssp             HTCSEEECTTSCCSCCCS--------CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCC
T ss_pred             cCCCEEEeCCCCCCCCCC--------CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---ccccc
Confidence            368899999887764432        3678999999999999 67764   468999999999998 55432   24699


Q ss_pred             EEeCCCCCCCCCCcccccCCCcccEEecCCCccccCC
Q 026180          103 SLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPI  139 (242)
Q Consensus       103 ~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~  139 (242)
                      +|++++|.++ .+|. ++.+++|+.+++++|.+....
T Consensus       102 ~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~  136 (353)
T d1jl5a_         102 YLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLP  136 (353)
T ss_dssp             EEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSCCC
T ss_pred             cccccccccc-cccc-hhhhccceeeccccccccccc
Confidence            9999999998 5565 678899999999999887443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=5e-09  Score=88.62  Aligned_cols=110  Identities=24%  Similarity=0.279  Sum_probs=71.4

Q ss_pred             CCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCcc----CcchhccCCCCCCEEeccCCCCCCC----CCccc
Q 026180           24 ALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVG----EIPTSIANLKGLRTLNLSTNSLQGH----IPPTL   95 (242)
Q Consensus        24 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~----~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~   95 (242)
                      +|+.||+++|.|....   .......++++++|+|++|.++.    .+...+...++|++|||++|.|+..    +...+
T Consensus         3 ~l~~ld~~~~~i~~~~---~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           3 DIQSLDIQCEELSDAR---WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEESCCCCHHH---HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCEEEeeCCcCChHH---HHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            5677777777666421   22333446778888888887763    2345566778888888888877531    11222


Q ss_pred             C-CCCCCCEEeCCCCCCCCC----CcccccCCCcccEEecCCCccc
Q 026180           96 G-NLIVLESLDLSNNKLSGQ----IPQQLGELTTLEVFDVSDNLLT  136 (242)
Q Consensus        96 ~-~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~  136 (242)
                      . ...+|+.|++++|.++..    ++..+..+++|+.|++++|.+.
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            2 234688888888888643    3445667788888888888765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.2e-08  Score=75.29  Aligned_cols=81  Identities=25%  Similarity=0.186  Sum_probs=45.8

Q ss_pred             hhcCccEEEccCCCCccCc--chhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcc-------cc
Q 026180           49 LSNLITAIILSNNSFVGEI--PTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQ-------QL  119 (242)
Q Consensus        49 ~~~~L~~L~Ls~n~i~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-------~~  119 (242)
                      .++.|+.|+|++|+|+...  +..+..+++|+.|++++|.|+...+-.+.....|+.+++++|.++.....       .+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            4566677777777766432  33455666777777777776633332333344566667777766644332       14


Q ss_pred             cCCCcccEEe
Q 026180          120 GELTTLEVFD  129 (242)
Q Consensus       120 ~~l~~L~~L~  129 (242)
                      ..+|+|+.||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            4566666553

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=8.8e-08  Score=76.91  Aligned_cols=41  Identities=24%  Similarity=0.195  Sum_probs=29.4

Q ss_pred             CCCCCCCEEeCCCC-CCCCCCcccccCCCcccEEecCCC-ccc
Q 026180           96 GNLIVLESLDLSNN-KLSGQIPQQLGELTTLEVFDVSDN-LLT  136 (242)
Q Consensus        96 ~~l~~L~~L~l~~N-~l~~~~p~~~~~l~~L~~L~l~~N-~l~  136 (242)
                      ..+++|+.|+++++ .++......+..+++|++|+++++ .++
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~  214 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII  214 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred             cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCC
Confidence            34678888888875 466566666777888888888874 454

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.4e-08  Score=85.73  Aligned_cols=135  Identities=19%  Similarity=0.078  Sum_probs=68.3

Q ss_pred             cccCCCCCcccCCCCCC--CCCCCCCcccceeeeEEEeecCCchhh-HHHhhcCccEEEccCCCCccCcch----hccCC
Q 026180            2 KDVNANNLTYLQDPLLG--PVRYPALTYYGFSYYSLTLSNKGTELE-YEKLSNLITAIILSNNSFVGEIPT----SIANL   74 (242)
Q Consensus         2 ~dLs~N~i~~l~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~~~~~L~~L~Ls~n~i~~~~p~----~~~~l   74 (242)
                      +++++|.+.......+.  ....+.++.+++++|.+.......... .......|+.+++++|.++.....    .+...
T Consensus       260 l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~  339 (460)
T d1z7xw1         260 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN  339 (460)
T ss_dssp             EECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccc
Confidence            45666666543321110  003456666666666543211100000 001123567777777776643222    22344


Q ss_pred             CCCCEEeccCCCCCCC----CCccc-CCCCCCCEEeCCCCCCCCC----CcccccCCCcccEEecCCCccc
Q 026180           75 KGLRTLNLSTNSLQGH----IPPTL-GNLIVLESLDLSNNKLSGQ----IPQQLGELTTLEVFDVSDNLLT  136 (242)
Q Consensus        75 ~~L~~L~L~~n~l~~~----~p~~~-~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~  136 (242)
                      ++|++|+|++|++++.    ++..+ .....|+.|++++|.++..    ++..+..+++|++|++++|+++
T Consensus       340 ~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         340 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             cchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            5677777777776532    22222 2345677777777777632    2334455667777777777765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.21  E-value=2.8e-08  Score=81.78  Aligned_cols=40  Identities=25%  Similarity=0.332  Sum_probs=17.0

Q ss_pred             CCCCCCCEEeCCCCCCCCC----CcccccCCCcccEEecCCCcc
Q 026180           96 GNLIVLESLDLSNNKLSGQ----IPQQLGELTTLEVFDVSDNLL  135 (242)
Q Consensus        96 ~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l  135 (242)
                      ...++|+.|++++|.++..    +...+..+++|+.|++++|.+
T Consensus       212 ~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i  255 (344)
T d2ca6a1         212 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL  255 (344)
T ss_dssp             GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             cchhhhcccccccccccccccccccccccccccchhhhhhcCcc
Confidence            3344444455544444321    112233444444455544444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.20  E-value=1.2e-07  Score=77.97  Aligned_cols=111  Identities=16%  Similarity=0.161  Sum_probs=74.5

Q ss_pred             HhhcCccEEEccCCCCccC-----cchhccCCCCCCEEeccCCCCCCC----CCcccCCCCCCCEEeCCCCCCCCCCccc
Q 026180           48 KLSNLITAIILSNNSFVGE-----IPTSIANLKGLRTLNLSTNSLQGH----IPPTLGNLIVLESLDLSNNKLSGQIPQQ  118 (242)
Q Consensus        48 ~~~~~L~~L~Ls~n~i~~~-----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~~  118 (242)
                      .....|+.|+|++|.|+..     +...+...+.|+.|++++|.++..    +...+...++|+.|++++|.++......
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~  262 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  262 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHH
Confidence            3456899999999998742     334566788999999999998643    3345677899999999999987542222


Q ss_pred             ----ccC--CCcccEEecCCCccccCC----CCCC--CCCCcCCccccCCCC
Q 026180          119 ----LGE--LTTLEVFDVSDNLLTGPI----PRGK--QFNTFGKGSFDGNPG  158 (242)
Q Consensus       119 ----~~~--l~~L~~L~l~~N~l~~~~----p~~~--~~~~~~~~~~~~n~~  158 (242)
                          +..  .+.|+.|++++|.++..-    ....  ....+..+.+.||..
T Consensus       263 l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             HHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence                222  367999999999886311    1100  123455566667654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=4.2e-07  Score=66.74  Aligned_cols=83  Identities=20%  Similarity=0.107  Sum_probs=63.9

Q ss_pred             CCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcc------
Q 026180           21 RYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPT------   94 (242)
Q Consensus        21 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~------   94 (242)
                      .+++|++|++++|.|+..+.  .......+++|+.|+|++|.|+...+-.+.....|+.+++++|.+.......      
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~--~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDD--MSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSG--GGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCch--hHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            57899999999999986542  1233455899999999999999554445556668999999999998665532      


Q ss_pred             -cCCCCCCCEEe
Q 026180           95 -LGNLIVLESLD  105 (242)
Q Consensus        95 -~~~l~~L~~L~  105 (242)
                       +..+|+|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence             56789999887

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=7.1e-07  Score=71.42  Aligned_cols=128  Identities=22%  Similarity=0.269  Sum_probs=88.0

Q ss_pred             cccCC-CCCcccCCC-CCCCCCCCCCcccceeee-EEEeecCCchhhHHHhhcCccEEEccCC--CCccC-cchhccCCC
Q 026180            2 KDVNA-NNLTYLQDP-LLGPVRYPALTYYGFSYY-SLTLSNKGTELEYEKLSNLITAIILSNN--SFVGE-IPTSIANLK   75 (242)
Q Consensus         2 ~dLs~-N~i~~l~~~-~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~L~~L~Ls~n--~i~~~-~p~~~~~l~   75 (242)
                      +||++ +.|++..-. .+.  .+++|++|+++++ .+.  +.+.........+.|+.|+++++  .++.. +...+..++
T Consensus       100 L~Ls~c~~itd~~l~~l~~--~~~~L~~L~ls~c~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~  175 (284)
T d2astb2         100 LNLSGCSGFSEFALQTLLS--SCSRLDELNLSWCFDFT--EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP  175 (284)
T ss_dssp             EECTTCBSCCHHHHHHHHH--HCTTCCEEECCCCTTCC--HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT
T ss_pred             ccccccccccccccchhhH--HHHhccccccccccccc--cccchhhhcccccccchhhhcccccccccccccccccccc
Confidence            56666 456542211 112  5789999999863 222  11111222333578999999975  34422 333345789


Q ss_pred             CCCEEeccCC-CCCCCCCcccCCCCCCCEEeCCC-CCCCCCCcccccCCCcccEEecCCC
Q 026180           76 GLRTLNLSTN-SLQGHIPPTLGNLIVLESLDLSN-NKLSGQIPQQLGELTTLEVFDVSDN  133 (242)
Q Consensus        76 ~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~L~l~~N  133 (242)
                      +|++|+++++ .+++.....+..+++|++|++++ +.++......++.+++|+.|++.++
T Consensus       176 ~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         176 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            9999999986 57877778888999999999999 4687666667888999999999876

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.70  E-value=2.9e-06  Score=62.40  Aligned_cols=83  Identities=18%  Similarity=0.139  Sum_probs=44.8

Q ss_pred             cCccEEEccCCCCccC----cchhccCCCCCCEEeccCCCCCCCCC----cccCCCCCCCEEeCCCCCCCCC-------C
Q 026180           51 NLITAIILSNNSFVGE----IPTSIANLKGLRTLNLSTNSLQGHIP----PTLGNLIVLESLDLSNNKLSGQ-------I  115 (242)
Q Consensus        51 ~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~l~~N~l~~~-------~  115 (242)
                      ..|+.|+|++|.+...    +...+...+.|+.|++++|.++...-    ..+..-++|+.|++++|.+...       +
T Consensus        44 ~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l  123 (167)
T d1pgva_          44 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM  123 (167)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred             CccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHH
Confidence            4567777777766532    22333445667777777776654221    2344456677777766655422       1


Q ss_pred             cccccCCCcccEEecCCC
Q 026180          116 PQQLGELTTLEVFDVSDN  133 (242)
Q Consensus       116 p~~~~~l~~L~~L~l~~N  133 (242)
                      ...+...++|+.|+++.+
T Consensus       124 ~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         124 MMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHCSSCCEEECCCC
T ss_pred             HHHHHhCCCccEeeCcCC
Confidence            222334456666666544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.16  E-value=0.0001  Score=53.71  Aligned_cols=87  Identities=11%  Similarity=0.160  Sum_probs=63.6

Q ss_pred             hcCccEEEccCC-CCccC----cchhccCCCCCCEEeccCCCCCCCCC----cccCCCCCCCEEeCCCCCCCCC----Cc
Q 026180           50 SNLITAIILSNN-SFVGE----IPTSIANLKGLRTLNLSTNSLQGHIP----PTLGNLIVLESLDLSNNKLSGQ----IP  116 (242)
Q Consensus        50 ~~~L~~L~Ls~n-~i~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~l~~N~l~~~----~p  116 (242)
                      .+.|+.|+|+++ .++..    +-..+...+.|++|+|++|.+.....    ..+...+.|+.|++++|.++..    +-
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            578999999874 56532    23345677889999999999864322    2345568899999999999843    22


Q ss_pred             ccccCCCcccEEecCCCccc
Q 026180          117 QQLGELTTLEVFDVSDNLLT  136 (242)
Q Consensus       117 ~~~~~l~~L~~L~l~~N~l~  136 (242)
                      ..+...++|+.|++++|.+.
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHhCCcCCEEECCCCcCC
Confidence            34667789999999988654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.88  E-value=2.6e-05  Score=56.87  Aligned_cols=115  Identities=17%  Similarity=0.153  Sum_probs=65.5

Q ss_pred             CCCCCcccceee-eEEEeecCCchhhHHHhhcCccEEEccCCCCccC----cchhccCCCCCCEEeccCCCCCCCCC---
Q 026180           21 RYPALTYYGFSY-YSLTLSNKGTELEYEKLSNLITAIILSNNSFVGE----IPTSIANLKGLRTLNLSTNSLQGHIP---   92 (242)
Q Consensus        21 ~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p---   92 (242)
                      ..++|++|++++ +.|+...-..........+.|+.|+|++|.++..    +...+...+.++.+++++|.+....-   
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            346777777765 3333211111111122356788888888887643    22334556788888888887754321   


Q ss_pred             -cccCCCCCCCEEeC--CCCCCCC----CCcccccCCCcccEEecCCCcc
Q 026180           93 -PTLGNLIVLESLDL--SNNKLSG----QIPQQLGELTTLEVFDVSDNLL  135 (242)
Q Consensus        93 -~~~~~l~~L~~L~l--~~N~l~~----~~p~~~~~l~~L~~L~l~~N~l  135 (242)
                       ..+...++|+.++|  ++|.+..    .+...+...++|+.|+++.+..
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence             34555677776444  4566642    1333455677888888766543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.37  E-value=0.0022  Score=46.04  Aligned_cols=91  Identities=12%  Similarity=0.096  Sum_probs=62.6

Q ss_pred             CCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccC----cchhccCCCCCCEEec--cCCCCCCC----
Q 026180           21 RYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGE----IPTSIANLKGLRTLNL--STNSLQGH----   90 (242)
Q Consensus        21 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~L--~~n~l~~~----   90 (242)
                      ..++|+.|++++|.+.................++.+++++|.++..    +...+...++|+.++|  ++|.+...    
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~  123 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  123 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHH
Confidence            5778999999999776543333333344568899999999998743    3345567788887555  56677542    


Q ss_pred             CCcccCCCCCCCEEeCCCCCC
Q 026180           91 IPPTLGNLIVLESLDLSNNKL  111 (242)
Q Consensus        91 ~p~~~~~l~~L~~L~l~~N~l  111 (242)
                      +...+...++|+.|++..+..
T Consensus       124 La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         124 IANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCCCcCEEeCcCCCC
Confidence            233455678999999987654