Citrus Sinensis ID: 026218

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
Protein Sequence
MEMNGSKREENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRFLM
Secondary Structure (PSIPRED)
ccEEcccccccccEEEccccEEEEEcccccccccccccEEEEEEEcccccccEEEEEccccEEEEEEccccEEEEccccccccccccccccccccEEEcccccccEEEEcccccEEEEEEccccEEEEEccccccccccccccccccccccccccccccccccccccccEEEcEEEEEEEEEEEEccccccccccccccEEEcEEEEccccccEEEEEEcccccEEEEccccEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHcccEEEEEEcccccccccccccccccEEcccccEEEEEEEccccEEEEEEcccEEEEEEcccccccccccccccccccEEEccccccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccHccccEEEEcccccccccccccccccccEEEEcccccEEEEEEEcccEEEEEEcccEEEEEcHccc
Coil and Loop (DISEMBL)
memngskreenekmeECKETVVYMWgylpgtspekspilspiparlcggdswkdvcgggcgfalatsesgklitwgsaddegqsyltsgkhgetpepfplpteaSVVKAAAGWAHCVSVTeagevytwgwrecvpsakvtrdfgsagsfqkdstgkqsalpteqappsdkrageEVVKrrktssareesenpasgdefftlspclvtlnpgvkitkvaaggrhtlILSGYRKYEAIGRFLM
Flexible Loop (DISEMBL)
memngskreenekmeECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGsfqkdstgkqsalpteqappsdkrageevvkrrktssareesenpasgdefftlsPCLVTLNPGVKItkvaaggrhtlilsgyrkyEAIGRFLM
Low Complexity Region (SEG)
MEMNGSkreenekmeeckeTVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRFLM
Disordered region (IsUnstruct)
*****************KETVVYMWGYLPGT*****PILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWG***************************ASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVT*********************************************************FFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRF**
Disordered Region (DISOPRED)
*******************TVVYMWGYLPGTS******LSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTR***************QSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRFLM
Disordered Region (DISEMBL)
***************ECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGS*************************************************GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRFLM
Disordered Region (DISPRO)
**************EECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAK**************************************V*RRKTSSARE********DEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRFL*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEMNGSKREENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRFLM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	241	2.2.26 [Sep-21-2011]
Q5RCZ7	551	RCC1 and BTB domain-conta	yes	no	0.435	0.190	0.318	7e-06
O95199	551	RCC1 and BTB domain-conta	yes	no	0.435	0.190	0.318	7e-06
Q9VR91	4912	Probable E3 ubiquitin-pro	yes	no	0.273	0.013	0.36	2e-05
Q99LJ7	551	RCC1 and BTB domain-conta	yes	no	0.435	0.190	0.309	3e-05
Q6P798	551	RCC1 and BTB domain-conta	yes	no	0.435	0.190	0.309	3e-05
Q4U2R1	4836	E3 ubiquitin-protein liga	no	no	0.290	0.014	0.358	5e-05
O95714	4834	E3 ubiquitin-protein liga	no	no	0.290	0.014	0.358	6e-05
Q4R828	376	RCC1 domain-containing pr	N/A	no	0.622	0.398	0.251	7e-05
Q15034	1050	Probable E3 ubiquitin-pro	no	no	0.692	0.159	0.215	0.0002
A6NED2	376	RCC1 domain-containing pr	no	no	0.655	0.420	0.267	0.0002

>sp|Q5RCZ7|RCBT2_PONAB RCC1 and BTB domain-containing protein 2 OS=Pongo abelii GN=RCBTB2 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 8/113 (7%)

Query: 22  VYMWGYL-PGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGSA 78
           V+ WGY   G     S +  PIP R+ G    K V    CG    +A  ++G++  WG  
Sbjct: 173 VFAWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGY- 231

Query: 79  DDEGQSYLTSGKHGETPEPFPLPTE--ASVVKAAAGWAHCVSVTEAGEVYTWG 129
              G   L  G  G  P P  +       V + A G+AH + +T+ G+VY WG
Sbjct: 232 --NGNGQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWG 282

Pongo abelii (taxid: 9601)

>sp|O95199|RCBT2_HUMAN RCC1 and BTB domain-containing protein 2 OS=Homo sapiens GN=RCBTB2 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 8/113 (7%)

Query: 22  VYMWGYL-PGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGSA 78
           V+ WGY   G     S +  PIP R+ G    K V    CG    +A  ++G++  WG  
Sbjct: 173 VFAWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGY- 231

Query: 79  DDEGQSYLTSGKHGETPEPFPLPTE--ASVVKAAAGWAHCVSVTEAGEVYTWG 129
              G   L  G  G  P P  +       V + A G+AH + +T+ G+VY WG
Sbjct: 232 --NGNGQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWG 282

Homo sapiens (taxid: 9606)

>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 9/75 (12%)

Query: 59   GCGFALATSESGKLITWGSADDEGQSYLTSG----KHGETPEPFPLPTEASVVKAAAGWA 114
            G  F+LA + +G++ TWG  D     Y   G    +H   P+P        V+  A G  
Sbjct: 3239 GAQFSLALTRAGEVWTWGKGD-----YYRLGHGGDQHVRKPQPIGGLRGRRVIHVAVGAL 3293

Query: 115  HCVSVTEAGEVYTWG 129
            HC++VT+AG+VY WG
Sbjct: 3294 HCLAVTDAGQVYAWG 3308

Probable E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.

Drosophila melanogaster (taxid: 7227)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q99LJ7|RCBT2_MOUSE RCC1 and BTB domain-containing protein 2 OS=Mus musculus GN=Rcbtb2 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 8/113 (7%)

Query: 22  VYMWGYL-PGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGSA 78
           V+ WGY   G     S    PIP R+ G    K V    CG   ++A  ++G++  WG  
Sbjct: 173 VFAWGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVMNIACGQMCSMAVVDTGEVYVWGY- 231

Query: 79  DDEGQSYLTSGKHGETPEPFPLPTE--ASVVKAAAGWAHCVSVTEAGEVYTWG 129
              G   L  G  G  P P  +       V + A G+AH + +T+ G++Y WG
Sbjct: 232 --NGNGQLGLGSSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQIYAWG 282

Mus musculus (taxid: 10090)

>sp|Q6P798|RCBT2_RAT RCC1 and BTB domain-containing protein 2 OS=Rattus norvegicus GN=Rcbtb2 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 8/113 (7%)

Query: 22  VYMWGYL-PGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGSA 78
           V+ WGY   G     S    PIP R+ G    K V    CG   ++A  ++G++  WG  
Sbjct: 173 VFAWGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVMSIACGQMCSMAVVDTGEVYVWGY- 231

Query: 79  DDEGQSYLTSGKHGETPEPFPLPTE--ASVVKAAAGWAHCVSVTEAGEVYTWG 129
              G   L  G  G  P P  +       V + A G+AH + +T+ G++Y WG
Sbjct: 232 --NGNGQLGLGSSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQIYAWG 282

Rattus norvegicus (taxid: 10116)

>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3

 Score = 48.1 bits (113), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 11/81 (13%)

Query: 55   VCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGK----HGETPEPFPLPTEASVVK 108
            VC   CG  F+LA ++SG + TWG  D     Y   G     H   P+         +V 
Sbjct: 3208 VCQIECGAQFSLALTKSGVVWTWGKGD-----YFRLGHGSDVHVRKPQVVEGLRGKKIVH 3262

Query: 109  AAAGWAHCVSVTEAGEVYTWG 129
             A G  HC++VT++G+VY WG
Sbjct: 3263 VAVGALHCLAVTDSGQVYAWG 3283

E3 ubiquitin-protein ligase that regulates ubiquitin-dependent retention of repair proteins on damaged chromosomes. Recruited to sites of DNA damage in response to ionizing radiation (IR) and facilitates the assembly of UBE2N and RNF8 promoting DNA damage-induced formation of 'Lys-63'-linked ubiquitin chains. Acts as a mediator of binding specificity between UBE2N and RNF8. Involved in the maintenance of RNF168 levels. E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of XPA which influences the circadian oscillation of DNA excision repair activity.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2

 Score = 48.1 bits (113), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 11/81 (13%)

Query: 55   VCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGK----HGETPEPFPLPTEASVVK 108
            VC   CG  F+LA ++SG + TWG  D     Y   G     H   P+         +V 
Sbjct: 3207 VCQIECGAQFSLALTKSGVVWTWGKGD-----YFRLGHGSDVHVRKPQVVEGLRGKKIVH 3261

Query: 109  AAAGWAHCVSVTEAGEVYTWG 129
             A G  HC++VT++G+VY WG
Sbjct: 3262 VAVGALHCLAVTDSGQVYAWG 3282

E3 ubiquitin-protein ligase that regulates ubiquitin-dependent retention of repair proteins on damaged chromosomes. Recruited to sites of DNA damage in response to ionizing radiation (IR) and facilitates the assembly of UBE2N and RNF8 promoting DNA damage-induced formation of 'Lys-63'-linked ubiquitin chains. Acts as a mediator of binding specificity between UBE2N and RNF8. Involved in the maintenance of RNF168 levels. E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of XPA which influences the circadian oscillation of DNA excision repair activity.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q4R828|RCCD1_MACFA RCC1 domain-containing protein 1 OS=Macaca fascicularis GN=RCCD1 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 81/199 (40%), Gaps = 49/199 (24%)

Query: 59  GCGFALATSESGKLITWGSADDEGQSYLTSGKHGET------PEPFPLPTEA----SVVK 108
           G   AL    +G++ +WG            G+HG+        E  P   EA    ++ +
Sbjct: 166 GAEHALLLDAAGQVFSWGG-----------GRHGQLGHGTLEAELEPRLLEALQGLTMAE 214

Query: 109 AAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAG-SFQKDSTGKQSALPTEQAPP 167
            AAG  H V V+E G++Y WGW E    A  TR+    G +  +++TG            
Sbjct: 215 VAAGGWHSVCVSETGDIYIWGWNESGQLALPTRNLAEDGETVAREATGLN---------- 264

Query: 168 SDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLIL 227
                 E+  + ++T    + +  P    + F   P L+ L  G    KV+ G RHT ++
Sbjct: 265 ------EDGSQVKRTGRVEDGAPAPFIAVQPF---PALLDLPLGSDAVKVSCGSRHTAVV 315

Query: 228 S--------GYRKYEAIGR 238
           +        G+ KY  +G 
Sbjct: 316 TRTGELYTWGWGKYGQLGH 334

Macaca fascicularis (taxid: 9541)

>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 5/172 (2%)

Query: 59  GCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHC 116
            CG   +LA S+ G+L +WG+  D     +T+      P       + ++++ + G  HC
Sbjct: 90  ACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHC 149

Query: 117 VSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEV 176
           +++   G+ +TWG +       + ++F S  S Q+  +     +P  Q       +    
Sbjct: 150 LALAADGQFFTWG-KNSHGQLGLGKEFPSQASPQRVRS--LEGIPLAQVAAGGAHSFALS 206

Query: 177 VKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
           +           +      DE    SPC V L    K+  ++ G  HT +L+
Sbjct: 207 LSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLT 258

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A6NED2|RCCD1_HUMAN RCC1 domain-containing protein 1 OS=Homo sapiens GN=RCCD1 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 78/191 (40%), Gaps = 33/191 (17%)

Query: 59  GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKA--AAGWAHC 116
           G   AL    +G++ +WG     GQ  L  G      EP  L     +V A  AAG  H 
Sbjct: 166 GAEHALLLDAAGQVFSWGGGR-HGQ--LGHGTLEAELEPRLLEALQGLVMAEVAAGGWHS 222

Query: 117 VSVTEAGEVYTWGWRECVPSAKVTRDFGSAG-SFQKDSTGKQSALPTEQAPPSDKRAGEE 175
           V V+E G++Y WGW E    A  TR+    G +  +++T                   E+
Sbjct: 223 VCVSETGDIYIWGWNESGQLALPTRNLAEDGETVAREAT----------------ELNED 266

Query: 176 VVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS------- 228
             + ++T  A + +  P    + F   P L+ L  G    K + G RHT +++       
Sbjct: 267 GSQVKRTGGAEDGAPAPFIAVQPF---PALLDLPMGSDAVKASCGSRHTAVVTRTGELYT 323

Query: 229 -GYRKYEAIGR 238
            G+ KY  +G 
Sbjct: 324 WGWGKYGQLGH 334

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
356566559	525	PREDICTED: probable E3 ubiquitin-protein	0.871	0.4	0.660	6e-78
356523185	528	PREDICTED: LOW QUALITY PROTEIN: probable	0.879	0.401	0.642	2e-77
255586057	478	Ran GTPase binding protein, putative [Ri	0.908	0.458	0.625	2e-77
449448608	485	PREDICTED: probable E3 ubiquitin-protein	0.946	0.470	0.595	8e-76
449519078	472	PREDICTED: probable E3 ubiquitin-protein	0.892	0.455	0.620	5e-75
255566472	476	Serine/threonine-protein kinase Nek8, pu	0.933	0.472	0.603	8e-75
359482088	514	PREDICTED: probable E3 ubiquitin-protein	0.925	0.433	0.612	3e-73
356539897	480	PREDICTED: probable E3 ubiquitin-protein	0.937	0.470	0.602	1e-72
225449388	484	PREDICTED: X-linked retinitis pigmentosa	0.933	0.464	0.594	6e-72
356569137	472	PREDICTED: probable E3 ubiquitin-protein	0.925	0.472	0.600	7e-72

>gi|356566559|ref|XP_003551498.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max]

 Score =  296 bits (757), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 150/227 (66%), Positives = 167/227 (73%), Gaps = 17/227 (7%)

Query: 19  ETVVYMWGYLPGTSPEKSPILSPIPARL----CGGDSWKDVCGGGCGFALATSESGKLIT 74
           E +VYMWGYLPG SPEKSPILSP P  L       DSWKDVCGGGCGFA+  SE GKLIT
Sbjct: 61  EKMVYMWGYLPGASPEKSPILSPAPVTLSDPSLAVDSWKDVCGGGCGFAMVISEKGKLIT 120

Query: 75  WGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECV 134
           WGSADDEGQSYL SGKHGE P  + LPTEASVVKAAAGWAHC SVTE GEVY WGW+ECV
Sbjct: 121 WGSADDEGQSYLISGKHGEIPGLYQLPTEASVVKAAAGWAHCASVTEEGEVYAWGWKECV 180

Query: 135 PSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPP-------------SDKRAGEEVVKRRK 181
           PS KV  DF + GS QKD  GKQS+   EQ  P              +K+ G+EVVKRRK
Sbjct: 181 PSGKVITDFITVGSLQKDIAGKQSSSIAEQGSPQSSNTSSGSDSHHDNKKVGDEVVKRRK 240

Query: 182 TSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
            + +R++S++ ASGDEFFT+SP LVTL  GVKIT V+ GGRHTL LS
Sbjct: 241 ITFSRQDSDSQASGDEFFTVSPSLVTLGNGVKITSVSLGGRHTLALS 287

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523185|ref|XP_003530222.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC3-like [Glycine max]

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 149/232 (64%), Positives = 167/232 (71%), Gaps = 20/232 (8%)

Query: 17  CKETVVYMWGYLPGTSPEKSPILSPIPARL----CGGDSWKDVCGGGCGFALATSESGKL 72
           C E +VYMWGYLPG SPEKSPILSP P  L      GDSWKDVCGGGCGFA+A SE GKL
Sbjct: 59  CAEKMVYMWGYLPGASPEKSPILSPAPVNLSDRSLAGDSWKDVCGGGCGFAMAISEKGKL 118

Query: 73  ITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRE 132
           ITWGSADDEGQSYL SGKHGE P  + LPTEASVVKAAAGWAHC SV E GEVY WGW+E
Sbjct: 119 ITWGSADDEGQSYLISGKHGEIPGLYQLPTEASVVKAAAGWAHCASVNEEGEVYAWGWKE 178

Query: 133 CVPSAKVTRDFGSAGSFQKDSTGKQSA----------------LPTEQAPPSDKRAGEEV 176
           CVPS KV  DF + GSFQKD  GKQ +                     +   +K+ G+EV
Sbjct: 179 CVPSGKVITDFITVGSFQKDVAGKQRSXWNFRHXTGSPQSSNTSSGSDSHHDNKKVGDEV 238

Query: 177 VKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
           +KRRK + +R++S++ ASGDEFFT+SP LVTL  GVKIT VA GGRHTL LS
Sbjct: 239 LKRRKITFSRQDSDSQASGDEFFTVSPSLVTLASGVKITSVAVGGRHTLALS 290

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586057|ref|XP_002533695.1| Ran GTPase binding protein, putative [Ricinus communis] gi|223526406|gb|EEF28690.1| Ran GTPase binding protein, putative [Ricinus communis]

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 155/248 (62%), Positives = 177/248 (71%), Gaps = 29/248 (11%)

Query: 1   MEMNGSKREENEKMEEC-KETVVYMWGYLPGTSPEKSPILSPIPARLCGG---DSWKDVC 56
           M +NG+  EE+ KMEEC K T VYM GYLPG SPEKSPILSPI   +  G   DSWKDVC
Sbjct: 1   MAINGNGEEEDVKMEECCKVTAVYMCGYLPGISPEKSPILSPIQVPISDGGGFDSWKDVC 60

Query: 57  GGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHC 116
            GGCGFA+A S SG LITWGS D+EGQSYLTSGKHGE PEPFPLP EASVVKAAAGWAHC
Sbjct: 61  SGGCGFAMAISGSGNLITWGSTDEEGQSYLTSGKHGEIPEPFPLPCEASVVKAAAGWAHC 120

Query: 117 VSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPS-------- 168
           VSVTE GEV+TWGW+ECVPS K+          Q+D+TGKQ+AL   +   S        
Sbjct: 121 VSVTETGEVFTWGWKECVPSVKI---------IQRDNTGKQNALLQTEKVSSRSEGSSLT 171

Query: 169 --------DKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAG 220
                    KR G+E+VKRR+ S  +E+ E+  SGDEFFT+ P +VTL PGV+IT VAAG
Sbjct: 172 RGTVLNSDSKRTGDEIVKRRRVSPTKEDFESSPSGDEFFTVLPLMVTLAPGVRITNVAAG 231

Query: 221 GRHTLILS 228
           GRHTL LS
Sbjct: 232 GRHTLALS 239

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448608|ref|XP_004142058.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus]

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 146/245 (59%), Positives = 165/245 (67%), Gaps = 17/245 (6%)

Query: 1   MEMNGSKREENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARL----CGGDSWKDVC 56
           M+   +      KM    + +VYMWGYLPG  P+KS +L P P RL     GGDSWK+VC
Sbjct: 1   MKEENAADHNGAKMANKIDALVYMWGYLPGALPDKSLLLLPEPVRLPSSIDGGDSWKEVC 60

Query: 57  GGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHC 116
           GGGCGFA+A S+SGKLITWG+AD+EGQ +LTSGKHGE PE FP PTE  VVKA AGWAHC
Sbjct: 61  GGGCGFAMAISDSGKLITWGAADEEGQIFLTSGKHGEIPEAFPFPTEDLVVKAVAGWAHC 120

Query: 117 VSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSD------- 169
           VSVTEAGEVYTWGW EC+PS K  RD    G   KDSTGKQS    EQA P D       
Sbjct: 121 VSVTEAGEVYTWGWSECIPSMKTLRDLAIGGGLLKDSTGKQSLTTAEQAGPQDSNGVDRM 180

Query: 170 ------KRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRH 223
                 KR GEE  KRRK +S +E++E  + GD+ FT  PCLV   PGVKI  VAAGGRH
Sbjct: 181 DSQLDNKRVGEETAKRRKINSVKEDTEISSPGDDLFTTLPCLVNFGPGVKIAAVAAGGRH 240

Query: 224 TLILS 228
           TL LS
Sbjct: 241 TLALS 245

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519078|ref|XP_004166562.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Cucumis sativus]

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 144/232 (62%), Positives = 161/232 (69%), Gaps = 17/232 (7%)

Query: 14  MEECKETVVYMWGYLPGTSPEKSPILSPIPARL----CGGDSWKDVCGGGCGFALATSES 69
           M    + +VYMWGYLPG  P+KS +L P P RL     GGDSWK+VCGGGCGFA+A S+S
Sbjct: 1   MANKIDALVYMWGYLPGALPDKSLLLLPEPVRLPSSIDGGDSWKEVCGGGCGFAMAISDS 60

Query: 70  GKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
           GKLITWG+AD+EGQ +LTSGKHGE PE FP PTE  VVKA AGWAHCVSVTEAGEVYTWG
Sbjct: 61  GKLITWGAADEEGQIFLTSGKHGEIPEAFPFPTEDLVVKAVAGWAHCVSVTEAGEVYTWG 120

Query: 130 WRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSD-------------KRAGEEV 176
           W EC+PS K  RD    G   KDSTGKQS    EQA P D             KR GEE 
Sbjct: 121 WSECIPSMKTLRDLAIGGGLLKDSTGKQSLTTAEQAGPQDSNGVDRMDSQLDNKRVGEET 180

Query: 177 VKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
            KRRK +S +E++E  + GD+ FT  PCLV   PGVKI  VAAGGRHTL LS
Sbjct: 181 AKRRKINSVKEDTEISSPGDDLFTTLPCLVNFGPGVKIAAVAAGGRHTLALS 232

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566472|ref|XP_002524221.1| Serine/threonine-protein kinase Nek8, putative [Ricinus communis] gi|223536498|gb|EEF38145.1| Serine/threonine-protein kinase Nek8, putative [Ricinus communis]

 Score =  286 bits (731), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 143/237 (60%), Positives = 172/237 (72%), Gaps = 12/237 (5%)

Query: 3   MNGSKREENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGF 62
           MNG  +E  +  E  KE +V+MWGYLPG  P++SPILSP+  R   G SWKDVCGGGCGF
Sbjct: 1   MNGEGKEVMKMEEMVKEKLVFMWGYLPGALPQRSPILSPVVVR-ADGYSWKDVCGGGCGF 59

Query: 63  ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEA 122
           A+A SESGKLITWGS DD GQSY+TSGKHGE PEPFPLPTEAS++KAAAGWAHC++ T+ 
Sbjct: 60  AMAISESGKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIMKAAAGWAHCIAATDT 119

Query: 123 GEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKR----------- 171
           GEVYTWGW+EC+PS KV  D   AG  +KD   + S   TEQ  P  +            
Sbjct: 120 GEVYTWGWKECIPSGKVFGDPSVAGGTEKDVFERHSPFLTEQVSPRSQSSRSTGGIDGRG 179

Query: 172 AGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
           +G+E  KRR+ SSA++ +E+ +SGDE  +  PCLVTLNPGV+IT VAAGGRHTL LS
Sbjct: 180 SGDESTKRRRISSAKQSAESSSSGDETLSALPCLVTLNPGVRITTVAAGGRHTLALS 236

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482088|ref|XP_002271900.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC3-like isoform 1 [Vitis vinifera]

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 152/248 (61%), Positives = 180/248 (72%), Gaps = 25/248 (10%)

Query: 2   EMNGSKRE-ENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARL----CGGDSWKDVC 56
           + +GS+ E E  KMEE   +VVYMWGYLPG S + SP+LSP+P  L       DSWKDVC
Sbjct: 17  DCDGSEGEGEAMKMEE---SVVYMWGYLPGASLQGSPLLSPVPVALPTSTLSEDSWKDVC 73

Query: 57  GGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHC 116
           GGGCGFA+A SESGKLITWGS DD GQSYLTSG+HGETPEPFPLPTEA +VKAAAGWAHC
Sbjct: 74  GGGCGFAVAISESGKLITWGSEDDLGQSYLTSGQHGETPEPFPLPTEAPIVKAAAGWAHC 133

Query: 117 VSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPP--------- 167
           VS+T+ GE YTWGW+ECVPS KV  D  +   F+KDS GKQS L TEQ  P         
Sbjct: 134 VSLTDKGEAYTWGWKECVPSGKVLLD-STGVRFEKDSFGKQSLLQTEQEGPKPQSSNSTG 192

Query: 168 ------SDKRAGEEVVKRRKTSSAREESENPA-SGDEFFTLSPCLVTLNPGVKITKVAAG 220
                  +++A E  +K+R+TSSA++E E+ + S DE F  SPCLVTL PGV+I+ +AAG
Sbjct: 193 GMLSRVDNRKAREGSIKKRRTSSAKQEPESSSMSDDETFLASPCLVTLGPGVRISTIAAG 252

Query: 221 GRHTLILS 228
           GRHTL LS
Sbjct: 253 GRHTLALS 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539897|ref|XP_003538429.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max]

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 144/239 (60%), Positives = 173/239 (72%), Gaps = 13/239 (5%)

Query: 3   MNGSKREENE-KMEECKETVVYMWGYLPGTSPEKSPILSPIPARLC-GGDSWKDVCGGGC 60
           MNG   E  + +ME  KE +VYMWGYLPG  P+++P+L+P+  R+   G SWKDVCGGGC
Sbjct: 1   MNGEGSEAMQVEMEIEKERLVYMWGYLPGALPQRTPLLTPVLVRVPPSGYSWKDVCGGGC 60

Query: 61  GFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVT 120
           GFA+A SE GKLITWGS DD GQSY+TSGKHGE PEPFPLPTE ++VKAAAGWAHCVSVT
Sbjct: 61  GFAMAISEPGKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEVTIVKAAAGWAHCVSVT 120

Query: 121 EAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDK---------- 170
           + GEVYTWGWRECVPS KV  +  +  S +KD  G+QS+  TEQ  P  +          
Sbjct: 121 DCGEVYTWGWRECVPSGKVFGESLTGVSPEKDVPGRQSSFLTEQVSPRSQGSKSTGGTAS 180

Query: 171 -RAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
             +GEE  KRR+ SSA++ +E  +S D+  T  PCLVTLNPGV+I  VAAGGRHTL LS
Sbjct: 181 GTSGEESSKRRRVSSAKQTAETSSSSDDTQTALPCLVTLNPGVRIASVAAGGRHTLALS 239

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449388|ref|XP_002282470.1| PREDICTED: X-linked retinitis pigmentosa GTPase regulator [Vitis vinifera]

 Score =  276 bits (706), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 145/244 (59%), Positives = 171/244 (70%), Gaps = 19/244 (7%)

Query: 3   MNGSKREENEK--MEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGG-DSWKDVCGGG 59
           MNG  +  +E   ME  +E +V+M GYLPG  P++SP+LSPI  R      +W+DVCGGG
Sbjct: 1   MNGEGKGPDEAVVMEGVREKLVFMMGYLPGALPQRSPLLSPIAVRSPASIHAWRDVCGGG 60

Query: 60  CGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSV 119
           CGFA+A SESGKLITWGS DD GQSY+TSGKHGETPEPFPLPTEAS+VKAAAGWAHC SV
Sbjct: 61  CGFAMAISESGKLITWGSTDDLGQSYVTSGKHGETPEPFPLPTEASIVKAAAGWAHCASV 120

Query: 120 TEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPP------------ 167
           TE GEVYTWGW+ECVPS KV  D    GS +KD   +QS+  TEQ  P            
Sbjct: 121 TENGEVYTWGWKECVPSGKVFGDPSVGGSLEKDVFERQSSFLTEQVSPRTQGSRSTAGGV 180

Query: 168 ---SDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHT 224
                K  GEE  KRR+  S+++ +E+ +SGDE  +  PCLVTLNPGV+I  VAAGGRHT
Sbjct: 181 SGTDSKGGGEESTKRRRMLSSKQAAES-SSGDETLSALPCLVTLNPGVRIANVAAGGRHT 239

Query: 225 LILS 228
           L LS
Sbjct: 240 LALS 243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569137|ref|XP_003552762.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform 1 [Glycine max]

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 143/238 (60%), Positives = 173/238 (72%), Gaps = 15/238 (6%)

Query: 3   MNGSKREENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLC-GGDSWKDVCGGGCG 61
           MNG   E +E M+  KE++VYMWGYLPG  P+++P+L+P+  R+   G  WKDVCGGGCG
Sbjct: 1   MNG---EGSEAMQVEKESLVYMWGYLPGALPQRTPLLTPLLVRVPPSGYFWKDVCGGGCG 57

Query: 62  FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTE 121
           FA+A SE GKLITWGS DD GQSY+TSGKHGETPEPFPLPTE ++VKAAAGWAHCVSVT+
Sbjct: 58  FAMAISEPGKLITWGSTDDLGQSYVTSGKHGETPEPFPLPTEVTIVKAAAGWAHCVSVTD 117

Query: 122 AGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDK----------- 170
            GEVYTWGWRECVPS KV  +  +  S +KD   +QS+  TEQ  P  +           
Sbjct: 118 CGEVYTWGWRECVPSGKVFGESLTGVSPEKDVPRRQSSFLTEQVSPRSQGSKSTGGTASG 177

Query: 171 RAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
            +GEE  KRR+ SSA++ +E  +S D+  T  PCLVTLNPGV+I  VAAGGRHTL LS
Sbjct: 178 TSGEESSKRRRVSSAKQTAETSSSSDDTQTALPCLVTLNPGVRIASVAAGGRHTLALS 235

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
TAIR|locus:2099986	488	AT3G55580 [Arabidopsis thalian	0.854	0.422	0.552	1.5e-60
TAIR|locus:2163986	440	UVR8 "UVB-RESISTANCE 8" [Arabi	0.439	0.240	0.292	3.4e-06
UNIPROTKB|O95199	551	RCBTB2 "RCC1 and BTB domain-co	0.435	0.190	0.318	5.4e-06
MGI|MGI:1917200	551	Rcbtb2 "regulator of chromosom	0.435	0.190	0.309	9.4e-06
TAIR|locus:2076889	393	AT3G02510 "AT3G02510" [Arabido	0.410	0.251	0.321	1.4e-05
UNIPROTKB|E1B8U7	377	RCCD1 "Uncharacterized protein	0.456	0.291	0.316	2.6e-05
TAIR|locus:2146142	396	AT5G16040 "AT5G16040" [Arabido	0.452	0.275	0.282	3.4e-05
UNIPROTKB|E2R5W9	313	RCCD1 "Uncharacterized protein	0.336	0.258	0.355	7.2e-05
UNIPROTKB|F1RW66	1050	HERC3 "Uncharacterized protein	0.688	0.158	0.216	0.00011
TAIR|locus:2159295	445	RUG3 "RCC1/UVR8/GEF-like 3" [A	0.385	0.208	0.33	0.00014

TAIR|locus:2099986 AT3G55580 [Arabidopsis thaliana (taxid:3702)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 122/221 (55%), Positives = 151/221 (68%)

Query:    21 VVYMWGYLPGTSPEKSPILSPIPARLCGG--DSWKDVCGGGCGFALATSESGKLITWGSA 78
             VVYMWGYLPG SP++SP++SP+  ++      SWKDV GGGCGFA+AT+ESGKLITWGS 
Sbjct:    32 VVYMWGYLPGASPQRSPLMSPVEVKIPPAVESSWKDVSGGGCGFAMATAESGKLITWGST 91

Query:    79 DDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAK 138
             DD GQSY+TSGKHGETPEPFPLP E  V KA AGWAHCV+VTE  +VYTWGWREC+P+ +
Sbjct:    92 DDLGQSYVTSGKHGETPEPFPLPPEVCVQKAEAGWAHCVAVTENQQVYTWGWRECIPTGR 151

Query:   139 V---------TRDFG-SAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREE 188
             V          R+   S       S GK+S+  T      + R G E  K+R+ S +++ 
Sbjct:   152 VFGQVDGDSCERNISFSTEQVSSSSQGKKSSGGTSSQV--EGRGGGEPTKKRRISPSKQA 209

Query:   189 SENPASGDEF-FTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
             +EN +  D    +  PCLV+L PGV+I  VAAGGRHTL LS
Sbjct:   210 AENSSQSDNIDLSALPCLVSLAPGVRIVSVAAGGRHTLALS 250

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
 Identities = 33/113 (29%), Positives = 50/113 (44%)

Query:    22 VYMWGYLP-GT--SPEKSPILSPIPARLCGGDSWKDV-CGGGCGFALATSESGKLITWGS 77
             VY WG+   G       S + +P+P +   G   K + CG      LA +  G++ +WG 
Sbjct:    89 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDS--HCLAVTMEGEVQSWGR 146

Query:    78 ADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
              +  GQ  L   +    P+         +   AAG  H  +VTE G++Y WGW
Sbjct:   147 -NQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGW 198

GO:0005737 "cytoplasm" evidence=ISM

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0009411 "response to UV" evidence=IMP

GO:0003682 "chromatin binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0010224 "response to UV-B" evidence=IEP;IGI

GO:0000785 "chromatin" evidence=IDA

GO:0009649 "entrainment of circadian clock" evidence=IMP

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0042803 "protein homodimerization activity" evidence=IDA

UNIPROTKB|O95199 RCBTB2 "RCC1 and BTB domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 131 (51.2 bits), Expect = 5.4e-06, P = 5.4e-06
 Identities = 36/113 (31%), Positives = 51/113 (45%)

Query:    22 VYMWGYL-PGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGSA 78
             V+ WGY   G     S +  PIP R+ G    K V    CG    +A  ++G++  WG  
Sbjct:   173 VFAWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGY- 231

Query:    79 DDEGQSYLTSGKHGETPEPFPLPTEAS--VVKAAAGWAHCVSVTEAGEVYTWG 129
                G   L  G  G  P P  +       V + A G+AH + +T+ G+VY WG
Sbjct:   232 --NGNGQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWG 282

GO:0005087 "Ran guanyl-nucleotide exchange factor activity" evidence=TAS

MGI|MGI:1917200 Rcbtb2 "regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2" [Mus musculus (taxid:10090)]

 Score = 129 (50.5 bits), Expect = 9.4e-06, P = 9.4e-06
 Identities = 35/113 (30%), Positives = 51/113 (45%)

Query:    22 VYMWGYL-PGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGSA 78
             V+ WGY   G     S    PIP R+ G    K V    CG   ++A  ++G++  WG  
Sbjct:   173 VFAWGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVMNIACGQMCSMAVVDTGEVYVWGY- 231

Query:    79 DDEGQSYLTSGKHGETPEPFPLPTEAS--VVKAAAGWAHCVSVTEAGEVYTWG 129
                G   L  G  G  P P  +       V + A G+AH + +T+ G++Y WG
Sbjct:   232 --NGNGQLGLGSSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQIYAWG 282

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2076889 AT3G02510 "AT3G02510" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 36/112 (32%), Positives = 58/112 (51%)

Query:    22 VYMWG--YLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSAD 79
             V+ WG  + PG   + S     +P R+ G ++ + +  G     LA  E G+L+ WG+ +
Sbjct:   171 VWTWGQPWPPGDIKQIS-----VPVRVQGLENVRLIAVGAF-HNLALEEDGRLLAWGN-N 223

Query:    80 DEGQSYLTSGKHGETPEPFPLP--TEASVVKAAAGWAHCVSVTEAGEVYTWG 129
             + GQ  L +G    T  P P+    + ++V  AAG  H  ++T+ GEVY WG
Sbjct:   224 EYGQ--LGTGDTQPTSHPVPVQGLDDLTLVDIAAGGWHSTALTDKGEVYGWG 273

GO:0003682 "chromatin binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008536 "Ran GTPase binding" evidence=ISS

UNIPROTKB|E1B8U7 RCCD1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 123 (48.4 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 38/120 (31%), Positives = 53/120 (44%)

Query:    59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKA---AAGWAH 115
             G   AL    +G++ +WG A   GQ  L  G     PEP  L     +  A   A GW H
Sbjct:   167 GAEHALLLDAAGQVFSWG-AGRHGQ--LGHGTLEAEPEPRLLEALQGLRMAEVAAGGW-H 222

Query:   116 CVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEE 175
              V ++E G++Y WGW E    A  T+     G   K + G+ S L  + +      AGE+
Sbjct:   223 SVCLSETGDIYIWGWNESGQLALPTKSLAEDG---KTTAGEASGLEEDGSEVKRGSAGED 279

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

TAIR|locus:2146142 AT5G16040 "AT5G16040" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
 Identities = 35/124 (28%), Positives = 50/124 (40%)

Query:    58 GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
             GG   +LA  + GKL TWG        +    K   TP          +V+AA G  HC+
Sbjct:    45 GGSRNSLAICDDGKLFTWGWNQRGTLGHPPETKTESTPSLVKSLANVKIVQAAIGGWHCL 104

Query:   118 SVTEAGEVYTWGWRECVPSAKVTRDFGSAGSF-QKDSTGKQSALPTEQAPPSDKRAGEEV 176
             +V + G  Y WG  E          +G  G    KD TG+    P  +     KR  +++
Sbjct:   105 AVDDQGRAYAWGGNE----------YGQCGEEPSKDETGR----PVRRDIVIPKRCAQQL 150

Query:   177 VKRR 180
               R+
Sbjct:   151 TVRQ 154

GO:0003682 "chromatin binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008536 "Ran GTPase binding" evidence=ISS

UNIPROTKB|E2R5W9 RCCD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 118 (46.6 bits), Expect = 7.2e-05, P = 7.2e-05
 Identities = 32/90 (35%), Positives = 42/90 (46%)

Query:    59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEAS--VVKAAAGWAHC 116
             G   AL   E+G++ +WG     GQ  L  G     PEP  L       V + AAG  H 
Sbjct:   103 GAEHALLLDEAGQVFSWGQGR-HGQ--LGHGSLEAEPEPRLLEALQGLPVAEVAAGGWHS 159

Query:   117 VSVTEAGEVYTWGWRE----CVPSAKVTRD 142
             V V+E G++Y WGW E     +PS  +  D
Sbjct:   160 VCVSETGDIYIWGWNESGQLALPSRSLAED 189

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1RW66 HERC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
 Identities = 37/171 (21%), Positives = 70/171 (40%)

Query:    60 CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
             CG   +LA S+ G+L +WG+  D     +T+ +    P       + ++++ + G  HC+
Sbjct:    91 CGESHSLALSDRGQLFSWGAGSDGQLGLMTTEESVAVPRLIQKLNQQTILQVSCGNWHCL 150

Query:   118 SVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVV 177
             ++   G+ +TWG +       + ++F S  S Q+        +P  Q       +    +
Sbjct:   151 ALAADGQFFTWG-KNSHGQLGLGKEFPSQASPQR--VRSLEGIPLAQVAAGGAHSFALSL 207

Query:   178 KRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
                        +      DE    SPC V L    K+  ++ G  HT +L+
Sbjct:   208 SGAVFGWGMNNAGQLGLSDEEDRESPCHVKLLRAQKVVYISCGEEHTAVLT 258

GO:0005737 "cytoplasm" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

TAIR|locus:2159295 RUG3 "RCC1/UVR8/GEF-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 0.00014, Sum P(2) = 0.00014
 Identities = 33/100 (33%), Positives = 46/100 (46%)

Query:    34 EKSPILSPIPARLCGGDSWKDVCGGGCG-FALATSESGKLITWGSADDEGQSYLTSGKHG 92
             ++S  L+  P R+   DS     G  CG F    +  G L  WG  D  G+  L  G+  
Sbjct:    83 DQSFSLAQTPGRI-DADSSSFRIGISCGLFHSGLTIDGDLWIWGKGDG-GR--LGFGQEN 138

Query:    93 ET--PEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
                 P   PL  E S+   A G  H V++T  G+V+TWG+
Sbjct:   139 SVFVPNLNPLFEEHSIRCIALGGLHSVALTHQGDVFTWGY 178

GO:0005737 "cytoplasm" evidence=ISM

GO:0008536 "Ran GTPase binding" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0008380 "RNA splicing" evidence=IMP

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	241
COG5184	476	COG5184, ATS1, Alpha-tubulin suppressor and relate	1e-04
pfam00415	50	pfam00415, RCC1, Regulator of chromosome condensat	2e-04
pfam13540	30	pfam13540, RCC1_2, Regulator of chromosome condens	3e-04
COG5184	476	COG5184, ATS1, Alpha-tubulin suppressor and relate	0.002

>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 4/110 (3%)

Query: 25  WGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGSADDEG 82
           +G L   S  +   L+  P       S   +C    G   +L   + G L  +G   D G
Sbjct: 313 FGQLGAGSDGEIGALTTKPNYK-QLLSGVTICSISAGESHSLILRKDGTLYAFGR-GDRG 370

Query: 83  QSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRE 132
           Q  +      +   P  L     + + A G  H ++ T+ G VY+WGW E
Sbjct: 371 QLGIQEEITIDVSTPTKLSVAIKLEQVACGTHHNIARTDDGSVYSWGWGE 420

Length = 476

>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLIL 227
           GDE   L P LV    GV++ +VA G  HT+ L
Sbjct: 18  GDEEDVLVPQLVEGLSGVRVVQVACGASHTVAL 50

Length = 50

>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 106 VVKAAAGWAHCVSVTEAGEVYTWGW 130
           VV  AAG  H +++T  G VY WG 
Sbjct: 1   VVSIAAGDYHTLALTSDGTVYCWGD 25

Length = 30

>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 8/76 (10%)

Query: 59  GCGFALATSESGKLITWGSADDEGQ-SYLTSGKHGE---TPEPFPLPTEASVVKAAAGWA 114
           G    +A +  GK+  WGS + +GQ    TS +        +PF +    ++   A G  
Sbjct: 239 GADHLIALTNEGKVYGWGS-NQKGQLGRPTSERLKLVVLVGDPFAIR---NIKYVACGKD 294

Query: 115 HCVSVTEAGEVYTWGW 130
           H +++ E GE+Y WG 
Sbjct: 295 HSLALDEDGEIYAWGV 310

Length = 476

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	241
KOG1427	443	consensus Uncharacterized conserved protein, conta	99.97
COG5184	476	ATS1 Alpha-tubulin suppressor and related RCC1 dom	99.97
COG5184	476	ATS1 Alpha-tubulin suppressor and related RCC1 dom	99.96
KOG1427	443	consensus Uncharacterized conserved protein, conta	99.92
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.9
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	99.82
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.81
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	99.68
PF00415	51	RCC1: Regulator of chromosome condensation (RCC1)	99.53
PF00415	51	RCC1: Regulator of chromosome condensation (RCC1)	99.44
PF13540	30	RCC1_2: Regulator of chromosome condensation (RCC1	99.41
KOG0941	850	consensus E3 ubiquitin protein ligase [Posttransla	99.22
PF13540	30	RCC1_2: Regulator of chromosome condensation (RCC1	99.16
KOG0941	850	consensus E3 ubiquitin protein ligase [Posttransla	98.64
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	92.26
KOG0315	311	consensus G-protein beta subunit-like protein (con	90.84
KOG3669	705	consensus Uncharacterized conserved protein, conta	90.29
KOG3669	705	consensus Uncharacterized conserved protein, conta	87.92
KOG0943	3015	consensus Predicted ubiquitin-protein ligase/hyper	86.89
smart00706	35	TECPR Beta propeller repeats in Physarum polycepha	86.77
smart00706	35	TECPR Beta propeller repeats in Physarum polycepha	85.19
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	84.08
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	82.86
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	81.95

>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]

Probab=99.97  E-value=1e-31  Score=215.33  Aligned_cols=189  Identities=19%  Similarity=0.168  Sum_probs=147.1

Q ss_pred             ccccCceeEEEecCCcEEEcccCC-CCCCCCC--CcccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCC
Q 026218            6 SKREENEKMEECKETVVYMWGYLP-GTSPEKS--PILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEG   82 (241)
Q Consensus         6 ~~~~~~~~l~~t~~G~vy~wG~n~-g~~~~~~--~~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~G   82 (241)
                      +++.+.|.+.|+-+|+.|+||.|. ||++...  ....|+.|.-++..+|++.++ +.+|+++||++|+||+||.| .+|
T Consensus        63 sG~~aaH~vli~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~-GrnHTl~ltdtG~v~afGeN-K~G  140 (443)
T KOG1427|consen   63 SGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAA-GRNHTLVLTDTGQVLAFGEN-KYG  140 (443)
T ss_pred             cccchhhEEEEecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhh-ccCcEEEEecCCcEEEeccc-ccc
Confidence            567778899999999999999997 7887664  345677787777778888887 56799999999999999999 999


Q ss_pred             ccccCCCC-CcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCC
Q 026218           83 QSYLTSGK-HGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALP  161 (241)
Q Consensus        83 qlG~~~~~-~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~  161 (241)
                      |||+++.. .+..|.++-.- ...|+.|+||.++++.|+..+.+.++|...|||||+-...                .+ 
T Consensus       141 QlGlgn~~~~v~s~~~~~~~-~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~----------------~~-  202 (443)
T KOG1427|consen  141 QLGLGNAKNEVESTPLPCVV-SDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDN----------------EF-  202 (443)
T ss_pred             cccccccccccccCCCcccc-CccceeeccccceEEEeecccceeecCCccccccccCcch----------------hh-
Confidence            99999654 33333333322 4679999999999999999999999999999998852110                00 


Q ss_pred             CCCCCCCCcccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEEEeecC
Q 026218          162 TEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRF  239 (241)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~~  239 (241)
                                    ..+-..+.+.           ...++.|..|..+.+..|+++|||.+|++|++++++||+||-.
T Consensus       203 --------------~~~~~~~~~~-----------~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysWGFG  255 (443)
T KOG1427|consen  203 --------------NMKDSSVRLA-----------YEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFG  255 (443)
T ss_pred             --------------ccccccceee-----------eecCCCccccccccceeeEEEeccCcceeeecCCccEEEeccc
Confidence                          0000011111           2245667778888999999999999999999999999999953

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.97  E-value=1.1e-29  Score=215.24  Aligned_cols=180  Identities=22%  Similarity=0.271  Sum_probs=138.2

Q ss_pred             cccCceeEEEecCCcEEEcccCC---CCCCCCC----CcccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCC
Q 026218            7 KREENEKMEECKETVVYMWGYLP---GTSPEKS----PILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSAD   79 (241)
Q Consensus         7 ~~~~~~~l~~t~~G~vy~wG~n~---g~~~~~~----~~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~   79 (241)
                      .|+...+.+++++|+||+||...   +..+...    ....++|+.++ ...+.++++ ++.|.++|+++|+||+||+| 
T Consensus       182 ~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~-G~dh~i~lt~~G~vy~~Gs~-  258 (476)
T COG5184         182 ACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAA-GADHLIALTNEGKVYGWGSN-  258 (476)
T ss_pred             ecCCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC-chheeeecc-CCceEEEEecCCcEEEecCC-
Confidence            46677899999999999999753   2222112    22446666666 467889998 56799999999999999999 


Q ss_pred             CCCccccCCCCCcCCceeeCCCC-CCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcC
Q 026218           80 DEGQSYLTSGKHGETPEPFPLPT-EASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQS  158 (241)
Q Consensus        80 ~~GqlG~~~~~~~~~p~~v~~~~-~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~  158 (241)
                      +.||||....+....+.+++.+. -..|+.|+||.+|++||+++|+||+||.|.+||||.- .+                
T Consensus       259 qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~-~~----------------  321 (476)
T COG5184         259 QKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAG-SD----------------  321 (476)
T ss_pred             cccccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccC-cc----------------
Confidence            99999987554444444433221 1238899999999999999999999999999988832 00                


Q ss_pred             CCCCCCCCCCCcccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEEEeec
Q 026218          159 ALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGR  238 (241)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~  238 (241)
                                                         .........|.....+.+..|.+|++|..|+++|..+|.||+|||
T Consensus       322 -----------------------------------~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr  366 (476)
T COG5184         322 -----------------------------------GEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGR  366 (476)
T ss_pred             -----------------------------------cccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecC
Confidence                                               001124567777777788889999999999999999999999999


Q ss_pred             CCC
Q 026218          239 FLM  241 (241)
Q Consensus       239 ~~~  241 (241)
                      +||
T Consensus       367 ~~~  369 (476)
T COG5184         367 GDR  369 (476)
T ss_pred             Ccc
Confidence            986

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.96  E-value=3.4e-28  Score=206.21  Aligned_cols=177  Identities=21%  Similarity=0.278  Sum_probs=129.6

Q ss_pred             cccccCceeEEEecCCcEEEcccCC-CCCCCCC---------------C---cccceeeee----cCCCCceeEEecCCC
Q 026218            5 GSKREENEKMEECKETVVYMWGYLP-GTSPEKS---------------P---ILSPIPARL----CGGDSWKDVCGGGCG   61 (241)
Q Consensus         5 ~~~~~~~~~l~~t~~G~vy~wG~n~-g~~~~~~---------------~---~~~p~~~~~----~~~~~i~~v~~~~~~   61 (241)
                      +..++.+|+++++.||.||+||.|. |.++...               .   ...|..+..    ....++++++|+ ..
T Consensus       108 ~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg-~e  186 (476)
T COG5184         108 KIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACG-WE  186 (476)
T ss_pred             EeecCCceEEeecCCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecC-Cc
Confidence            4457889999999999999999986 4444333               1   334444444    114478899994 45


Q ss_pred             eEEEEeCCCCEEEeecCCCCCccccCCCCCcC----CceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCC
Q 026218           62 FALATSESGKLITWGSADDEGQSYLTSGKHGE----TPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSA  137 (241)
Q Consensus        62 h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~----~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG  137 (241)
                      ++++|+++|+||+||.+ ..+.++.+......    .+.++.++ ...|+++|+|.+|.++|+++|+||.||+|..||||
T Consensus       187 ~svil~~~G~V~~~gt~-r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG  264 (476)
T COG5184         187 ISVILTADGRVYSWGTF-RCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLG  264 (476)
T ss_pred             eEEEEccCCcEEEecCc-cccccccccccccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCcccccC
Confidence            99999999999999999 88888887443322    24555554 56799999999999999999999999999999888


Q ss_pred             CccccCCCCCccccCCCCCcCCCCCCCCCCCCcccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEE
Q 026218          138 KVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKV  217 (241)
Q Consensus       138 ~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~I  217 (241)
                      +.-..     ++                                               ......|..+.   -..|+.|
T Consensus       265 ~~~~e-----~~-----------------------------------------------~~~~lv~~~f~---i~~i~~v  289 (476)
T COG5184         265 RPTSE-----RL-----------------------------------------------KLVVLVGDPFA---IRNIKYV  289 (476)
T ss_pred             Cchhh-----hc-----------------------------------------------ccccccCChhh---hhhhhhc
Confidence            53210     00                                               00111122111   1238899


Q ss_pred             ecCCCeeEEEecCCcEEEeecC
Q 026218          218 AAGGRHTLILSGYRKYEAIGRF  239 (241)
Q Consensus       218 a~G~~hs~alt~~G~vy~wG~~  239 (241)
                      +||.+|++||+++|+||+||-+
T Consensus       290 acG~~h~~al~~~G~i~a~G~n  311 (476)
T COG5184         290 ACGKDHSLALDEDGEIYAWGVN  311 (476)
T ss_pred             ccCcceEEEEcCCCeEEEeccc
Confidence            9999999999999999999964

>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]

Probab=99.92  E-value=3.8e-25  Score=177.74  Aligned_cols=163  Identities=24%  Similarity=0.261  Sum_probs=128.0

Q ss_pred             cCCcEEEcccCC------CCCCCCCCcccceeeeecCCCCceeEEecCCC-eEEEEeCCCCEEEeecCCCCCccccCCCC
Q 026218           18 KETVVYMWGYLP------GTSPEKSPILSPIPARLCGGDSWKDVCGGGCG-FALATSESGKLITWGSADDEGQSYLTSGK   90 (241)
Q Consensus        18 ~~G~vy~wG~n~------g~~~~~~~~~~p~~~~~~~~~~i~~v~~~~~~-h~~~lt~~G~vy~wG~n~~~GqlG~~~~~   90 (241)
                      +-|++..+|.-.      ...........|..+.-+.+.+|+.|+++.+. |+++|+-+|++|+||.| ..||||+++..
T Consensus        18 ~~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRN-ekGQLGhgD~k   96 (443)
T KOG1427|consen   18 KGGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRN-EKGQLGHGDMK   96 (443)
T ss_pred             CCccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecccceeecccC-ccCccCccchh
Confidence            567777777432      11122224566777777778889999995444 99999999999999999 99999999888


Q ss_pred             CcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCCCCCCCCCCc
Q 026218           91 HGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDK  170 (241)
Q Consensus        91 ~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  170 (241)
                      ....|+.|+.+...+|++.|||++|+++||++|+||.||.|.+||||.-                               
T Consensus        97 ~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlg-------------------------------  145 (443)
T KOG1427|consen   97 QRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLG-------------------------------  145 (443)
T ss_pred             hccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEeccccccccccc-------------------------------
Confidence            8999999999999999999999999999999999999999999988821                               


Q ss_pred             ccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEEEee
Q 026218          171 RAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIG  237 (241)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG  237 (241)
                         ..                     ......|.++- ..+.+|+.|+||..+++.|+..+.|.++|
T Consensus       146 ---n~---------------------~~~v~s~~~~~-~~~~~v~~v~cga~ftv~l~~~~si~t~g  187 (443)
T KOG1427|consen  146 ---NA---------------------KNEVESTPLPC-VVSDEVTNVACGADFTVWLSSTESILTAG  187 (443)
T ss_pred             ---cc---------------------ccccccCCCcc-ccCccceeeccccceEEEeecccceeecC
Confidence               00                     00112222221 12347999999999999999999999887

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.90  E-value=6e-24  Score=189.31  Aligned_cols=173  Identities=18%  Similarity=0.198  Sum_probs=136.8

Q ss_pred             eEEEecCCcEEEcccCCC-CC--CCCCCcccceeeeecC--CCCceeEEecCCCeEEEEeCCCCEEEeecCCCCCccccC
Q 026218           13 KMEECKETVVYMWGYLPG-TS--PEKSPILSPIPARLCG--GDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLT   87 (241)
Q Consensus        13 ~l~~t~~G~vy~wG~n~g-~~--~~~~~~~~p~~~~~~~--~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~GqlG~~   87 (241)
                      -+..|...+||+||.|.+ .+  +.......|..+.++.  +.-+++|+. +..|+++|++.|+||+||.+ .-|.||++
T Consensus       135 ~~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l-~kfHSvfl~~kgqvY~cGhG-~GGRlG~g  212 (1267)
T KOG0783|consen  135 HPVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQL-SKFHSVFLTEKGQVYVCGHG-AGGRLGFG  212 (1267)
T ss_pred             ccccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHH-hhceeeEecCCCcEEEeccC-CCCccCcC
Confidence            467788899999999852 22  3334556777777664  455778887 34599999999999999999 89999999


Q ss_pred             CCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCCCCCCCC
Q 026218           88 SGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPP  167 (241)
Q Consensus        88 ~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~  167 (241)
                      +......|+.|+.+.+.+|.+|++...|+++||++|.||+||.|.++|||.....           +             
T Consensus       213 deq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~-----------~-------------  268 (1267)
T KOG0783|consen  213 DEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDE-----------L-------------  268 (1267)
T ss_pred             cccccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCch-----------h-------------
Confidence            8888899999999999999999999999999999999999999999988843210           0             


Q ss_pred             CCcccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEEEeecCC
Q 026218          168 SDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRFL  240 (241)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~~~  240 (241)
                                                .-+...+..|.+++...  .|+.|+||..|++|.|+. .||+||-|.
T Consensus       269 --------------------------~~~~p~qI~a~r~kg~~--~iIgvaAg~~hsVawt~~-~VY~wGlN~  312 (1267)
T KOG0783|consen  269 --------------------------KKDDPIQITARRIKGFK--QIIGVAAGKSHSVAWTDT-DVYSWGLNN  312 (1267)
T ss_pred             --------------------------hcCchhhhhhHhhcchh--hhhhhhcccceeeeeecc-eEEEecccC
Confidence                                      01122344555555432  799999999999999964 799999763

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=99.82  E-value=8.3e-20  Score=169.24  Aligned_cols=81  Identities=26%  Similarity=0.338  Sum_probs=74.9

Q ss_pred             CCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCCCCCCCCCCcccCceeeeecee
Q 026218          103 EASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKT  182 (241)
Q Consensus       103 ~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (241)
                      +.++++|+||.+|+++|.++++||+||+|.+||||                                             
T Consensus       766 dvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG---------------------------------------------  800 (3738)
T KOG1428|consen  766 DVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLG---------------------------------------------  800 (3738)
T ss_pred             ceeEEEEeccCceEEEEecCCcEEEecCCcccccC---------------------------------------------
Confidence            45799999999999999999999999999999888                                             


Q ss_pred             eeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEEEeecC
Q 026218          183 SSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRF  239 (241)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~~  239 (241)
                                 .||......|++|..+++..|+||++|++|++++..||.||+||.+
T Consensus       801 -----------~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF  846 (3738)
T KOG1428|consen  801 -----------VGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAF  846 (3738)
T ss_pred             -----------cCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccc
Confidence                       5566678899999999999999999999999999999999999976

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.81  E-value=2.8e-19  Score=159.88  Aligned_cols=170  Identities=18%  Similarity=0.170  Sum_probs=130.2

Q ss_pred             cCceeEEEecCCcEEEcccCCC-CCCCCC--CcccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCCccc
Q 026218            9 EENEKMEECKETVVYMWGYLPG-TSPEKS--PILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSY   85 (241)
Q Consensus         9 ~~~~~l~~t~~G~vy~wG~n~g-~~~~~~--~~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~GqlG   85 (241)
                      .+-|++++++.|+||++|.+.| .++.+.  ..+.|+.++.+.+.++.+|+. +..|+++||++|.||+||.| .++|||
T Consensus       185 ~kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq~~~iPkrV~gL~gh~~~qisv-s~~HslvLT~~g~Vys~GlN-~~hqLG  262 (1267)
T KOG0783|consen  185 SKFHSVFLTEKGQVYVCGHGAGGRLGFGDEQYNFIPKRVPGLIGHKVIQISV-SHTHSLVLTKFGSVYSWGLN-GSHQLG  262 (1267)
T ss_pred             hhceeeEecCCCcEEEeccCCCCccCcCcccccccccccccccccceEEEEe-ecceeEEEeecceEEEeecC-cccccC
Confidence            4567999999999999999874 444443  345666688888899999998 45599999999999999999 999999


Q ss_pred             cCCC-CCcCCceeeCCC--CC-CCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCC
Q 026218           86 LTSG-KHGETPEPFPLP--TE-ASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALP  161 (241)
Q Consensus        86 ~~~~-~~~~~p~~v~~~--~~-~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~  161 (241)
                      +.+. .....|..|...  .+ ..|+.||||..|++|.|+. .||+||.|. ||||   +.+                  
T Consensus       263 ~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~hsVawt~~-~VY~wGlN~-GQlG---i~~------------------  319 (1267)
T KOG0783|consen  263 LSNDELKKDDPIQITARRIKGFKQIIGVAAGKSHSVAWTDT-DVYSWGLNN-GQLG---ISD------------------  319 (1267)
T ss_pred             CcCchhhcCchhhhhhHhhcchhhhhhhhcccceeeeeecc-eEEEecccC-ceec---CCC------------------
Confidence            9743 344556555322  12 3799999999999999954 699999996 4444   321                  


Q ss_pred             CCCCCCCCcccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEEEeec
Q 026218          162 TEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGR  238 (241)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~  238 (241)
                                                        +......|+.+.. ....|..|+|-..-++++++++.+|++-.
T Consensus       320 ----------------------------------n~~~Vt~Pr~l~~-~~~~v~~v~a~~~ATVc~~~~~~i~~~ad  361 (1267)
T KOG0783|consen  320 ----------------------------------NISVVTTPRRLAG-LLSPVIHVVATTRATVCLLQNNSIIAFAD  361 (1267)
T ss_pred             ----------------------------------CCceeecchhhcc-cccceEEEEecCccEEEEecCCcEEEEec
Confidence                                              1224667765532 35689999999999999999999998754

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=99.68  E-value=7.1e-16  Score=143.70  Aligned_cols=91  Identities=23%  Similarity=0.290  Sum_probs=81.6

Q ss_pred             CCceeEEecCCCeEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEec
Q 026218           50 DSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG  129 (241)
Q Consensus        50 ~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG  129 (241)
                      .++.+|+| |..|+++|.+|++||+||.| .+||||.++......|+.|.++.+..|++|++|.+|++++-.||.||+||
T Consensus       767 vkv~sVSC-G~~HtVlL~sd~~VfTFG~~-~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFG  844 (3738)
T KOG1428|consen  767 VKVSSVSC-GNFHTVLLASDRRVFTFGSN-CHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFG  844 (3738)
T ss_pred             eeEEEEec-cCceEEEEecCCcEEEecCC-cccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEec
Confidence            34455665 23499999999999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcccc
Q 026218          130 WRECVPSAKVTRD  142 (241)
Q Consensus       130 ~n~~gQlG~l~~~  142 (241)
                      .-..|||++....
T Consensus       845 aF~KGQL~RP~~e  857 (3738)
T KOG1428|consen  845 AFGKGQLARPAGE  857 (3738)
T ss_pred             cccCccccCcccc
Confidence            9999999987543

>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS)

Probab=99.53  E-value=4.5e-15  Score=91.51  Aligned_cols=50  Identities=28%  Similarity=0.508  Sum_probs=46.4

Q ss_pred             CCCEEEeecCCCCCccc-cCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEE
Q 026218           69 SGKLITWGSADDEGQSY-LTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSV  119 (241)
Q Consensus        69 ~G~vy~wG~n~~~GqlG-~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~l  119 (241)
                      ||+||+||.| .+|||| .........|++++.+...+|++|+||.+||+||
T Consensus         1 dG~vy~wG~n-~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l   51 (51)
T PF00415_consen    1 DGRVYSWGSN-DYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL   51 (51)
T ss_dssp             TSEEEEEEEE-TTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred             CCcEEEEECC-CCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence            6999999999 999999 6677788899999999889999999999999997

The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.

>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS)

Probab=99.44  E-value=1.4e-13  Score=84.73  Aligned_cols=30  Identities=40%  Similarity=0.504  Sum_probs=27.6

Q ss_pred             cceecceEeecCCCCcEEEEecCCCeeEEE
Q 026218          198 FFTLSPCLVTLNPGVKITKVAAGGRHTLIL  227 (241)
Q Consensus       198 ~~~~~P~~v~~~~~~~i~~Ia~G~~hs~al  227 (241)
                      .....|++|..+.+.+|++|+||.+|++||
T Consensus        22 ~~~~~P~~v~~~~~~~i~~va~G~~ht~~l   51 (51)
T PF00415_consen   22 KNVSVPTKVPFLSGVRIVQVACGSDHTLAL   51 (51)
T ss_dssp             SEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred             CceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence            368899999999999999999999999997

The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.

>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B

Probab=99.41  E-value=2.2e-13  Score=73.77  Aligned_cols=30  Identities=40%  Similarity=0.615  Sum_probs=25.8

Q ss_pred             eEEEecCCCeEEEEEcCCCEEEecCCCCCC
Q 026218          106 VVKAAAGWAHCVSVTEAGEVYTWGWRECVP  135 (241)
Q Consensus       106 i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQ  135 (241)
                      |++|+||.+|+++|+++|+||+||.|.+||
T Consensus         1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ   30 (30)
T PF13540_consen    1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ   30 (30)
T ss_dssp             EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred             CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence            789999999999999999999999999975

>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=1.3e-13  Score=124.43  Aligned_cols=141  Identities=23%  Similarity=0.267  Sum_probs=111.4

Q ss_pred             ceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEE
Q 026218           41 PIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVT  120 (241)
Q Consensus        41 p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt  120 (241)
                      |+.+.++...++.++.|| ..|+++++..|++|.||.| .+||+|.+.......|.+++.+.+.+..+|+||.+||++++
T Consensus         5 ~~~~~~l~~k~~lq~~cG-n~hclal~~~g~~~~wg~~-~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS   82 (850)
T KOG0941|consen    5 PRLVLILNYKHILQVGCG-NNHCLALSCAGELFVWGMN-NNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALS   82 (850)
T ss_pred             hHHHHHHhhhhhhhhccc-cHHHHhhhccCCeeeccCC-ccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhh
Confidence            445555556677888884 4599999999999999999 99999998544444499999999999999999999998877


Q ss_pred             c-------CCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCCCCCCCCCCcccCceeeeeceeeeccCCCCCCC
Q 026218          121 E-------AGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPA  193 (241)
Q Consensus       121 ~-------~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (241)
                      .       +|.++++|....+|+|+-.                                                     
T Consensus        83 ~~~~~lt~e~~~fs~Ga~~~~q~~h~~-----------------------------------------------------  109 (850)
T KOG0941|consen   83 SHTVLLTDEGKVFSFGAGSTGQLGHSL-----------------------------------------------------  109 (850)
T ss_pred             hchhhcchhccccccCCcccccccccc-----------------------------------------------------
Confidence            7       9999999999998888411                                                     


Q ss_pred             CCCccceecceEeecCCCCcEEEEecCCCeeEEEe-cCCcEEEeecC
Q 026218          194 SGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS-GYRKYEAIGRF  239 (241)
Q Consensus       194 ~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt-~~G~vy~wG~~  239 (241)
                         ......|..+..+-+..+.+|+||..|+++.- .-|++|.+|..
T Consensus       110 ---~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~  153 (850)
T KOG0941|consen  110 ---TENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKG  153 (850)
T ss_pred             ---cccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccC
Confidence               11334555555555678999999999988874 46888888764

>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B

Probab=99.16  E-value=5e-11  Score=64.49  Aligned_cols=27  Identities=26%  Similarity=0.330  Sum_probs=23.1

Q ss_pred             EEEEecCCCeeEEEecCCcEEEeecCC
Q 026218          214 ITKVAAGGRHTLILSGYRKYEAIGRFL  240 (241)
Q Consensus       214 i~~Ia~G~~hs~alt~~G~vy~wG~~~  240 (241)
                      |++|+||.+|+++|+++|+||+||+|.
T Consensus         1 V~~ia~G~~ht~al~~~g~v~~wG~n~   27 (30)
T PF13540_consen    1 VVQIACGGYHTCALTSDGEVYCWGDNN   27 (30)
T ss_dssp             EEEEEEESSEEEEEE-TTEEEEEE--T
T ss_pred             CEEEEecCCEEEEEEcCCCEEEEcCCc
Confidence            789999999999999999999999986

>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=9.7e-10  Score=99.82  Aligned_cols=90  Identities=23%  Similarity=0.336  Sum_probs=73.0

Q ss_pred             CceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCCCCCCCCCCcccC
Q 026218           94 TPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAG  173 (241)
Q Consensus        94 ~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  173 (241)
                      .|+.+..+...+|.+++||.+|+++++..|++|+||.|.+||+|+--                                 
T Consensus         4 ~~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~---------------------------------   50 (850)
T KOG0941|consen    4 APRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRAL---------------------------------   50 (850)
T ss_pred             hhHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhc---------------------------------
Confidence            35555555567899999999999999999999999999998887420                                 


Q ss_pred             ceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEec-------CCcEEEeecC
Q 026218          174 EEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSG-------YRKYEAIGRF  239 (241)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~-------~G~vy~wG~~  239 (241)
                                            ...... |..++.+.+.+..+|+||..|+++++.       +|.++++|..
T Consensus        51 ----------------------~~~~~~-p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~e~~~fs~Ga~  100 (850)
T KOG0941|consen   51 ----------------------YFPDAK-PEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTDEGKVFSFGAG  100 (850)
T ss_pred             ----------------------cCCCCC-CccchhhcCCcHHHHhcCCCcchhhhhchhhcchhccccccCCc
Confidence                                  001233 888999999999999999999888876       9999998863

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=92.26  E-value=2.8  Score=34.85  Aligned_cols=102  Identities=14%  Similarity=0.139  Sum_probs=59.3

Q ss_pred             eEEEecCCcEEEcccCCCCCCCCCCcccceeeeecCCCCceeEEec-CCC-eEEEEeCCCCEEEeecCCCCCccccCCCC
Q 026218           13 KMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGG-GCG-FALATSESGKLITWGSADDEGQSYLTSGK   90 (241)
Q Consensus        13 ~l~~t~~G~vy~wG~n~g~~~~~~~~~~p~~~~~~~~~~i~~v~~~-~~~-h~~~lt~~G~vy~wG~n~~~GqlG~~~~~   90 (241)
                      .++...||.||.=++..+..+.-.+.          .-+++.+..+ ++. |.+++..||..|.+-.....+.++  .  
T Consensus        66 dvapapdG~VWft~qg~gaiGhLdP~----------tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~d--p--  131 (353)
T COG4257          66 DVAPAPDGAVWFTAQGTGAIGHLDPA----------TGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLD--P--  131 (353)
T ss_pred             ccccCCCCceEEecCccccceecCCC----------CCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEec--C--
Confidence            67888999999877766555443221          1122233321 222 999999999999985541111221  1  


Q ss_pred             CcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCCC
Q 026218           91 HGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWREC  133 (241)
Q Consensus        91 ~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~  133 (241)
                      .....+..+++     .+.+-+.--+++++..|+||.-|.+-+
T Consensus       132 kt~evt~f~lp-----~~~a~~nlet~vfD~~G~lWFt~q~G~  169 (353)
T COG4257         132 KTLEVTRFPLP-----LEHADANLETAVFDPWGNLWFTGQIGA  169 (353)
T ss_pred             cccceEEeecc-----cccCCCcccceeeCCCccEEEeecccc
Confidence            11222333332     222334457889999999999988643

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=90.84  E-value=8  Score=31.71  Aligned_cols=24  Identities=17%  Similarity=0.353  Sum_probs=17.1

Q ss_pred             EecCCCeEEEEEcCCCEEEecCCC
Q 026218          109 AAAGWAHCVSVTEAGEVYTWGWRE  132 (241)
Q Consensus       109 ia~G~~hs~~lt~~G~vy~wG~n~  132 (241)
                      +.--..|-+.-+.+|+|++|-...
T Consensus       132 lhpnQteLis~dqsg~irvWDl~~  155 (311)
T KOG0315|consen  132 LHPNQTELISGDQSGNIRVWDLGE  155 (311)
T ss_pred             ecCCcceEEeecCCCcEEEEEccC
Confidence            334455777778899999996543

>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]

Probab=90.29  E-value=7.3  Score=35.59  Aligned_cols=71  Identities=17%  Similarity=0.190  Sum_probs=48.9

Q ss_pred             CceeEEecCCCeEEEEeCCCCEEE-eecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEe
Q 026218           51 SWKDVCGGGCGFALATSESGKLIT-WGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTW  128 (241)
Q Consensus        51 ~i~~v~~~~~~h~~~lt~~G~vy~-wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~w  128 (241)
                      .+.+|+++-.+-..+++.+|.||. -|-. +..+.|..= ..+..|+  ...   .++.|+.|..-.-|||.+|++|.=
T Consensus       228 ~L~qISagPtg~VwAvt~nG~vf~R~GVs-RqNp~GdsW-kdI~tP~--~a~---~~v~iSvGt~t~Waldndg~lwfr  299 (705)
T KOG3669|consen  228 DLSQISAGPTGVVWAVTENGAVFYREGVS-RQNPEGDSW-KDIVTPR--QAL---EPVCISVGTQTLWALDNDGNLWFR  299 (705)
T ss_pred             ccceEeecCcceEEEEeeCCcEEEEeccc-ccCCCCchh-hhccCcc--ccc---ceEEEEeccceEEEEecCCcEEEE
Confidence            466788865468899999999754 4655 555555321 1233333  222   299999999999999999999864

>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]

Probab=87.92  E-value=7.3  Score=35.58  Aligned_cols=22  Identities=9%  Similarity=-0.026  Sum_probs=20.4

Q ss_pred             EEEEecCCCeeEEEecCCcEEE
Q 026218          214 ITKVAAGGRHTLILSGYRKYEA  235 (241)
Q Consensus       214 i~~Ia~G~~hs~alt~~G~vy~  235 (241)
                      ++.|+.|....-+||.+|.+|.
T Consensus       277 ~v~iSvGt~t~Waldndg~lwf  298 (705)
T KOG3669|consen  277 PVCISVGTQTLWALDNDGNLWF  298 (705)
T ss_pred             eEEEEeccceEEEEecCCcEEE
Confidence            8999999999999999999985

>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=86.89  E-value=0.92  Score=44.75  Aligned_cols=80  Identities=18%  Similarity=0.193  Sum_probs=56.6

Q ss_pred             CCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCCCCCCCCCCcccCceeeeecee
Q 026218          103 EASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKT  182 (241)
Q Consensus       103 ~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (241)
                      ..+++.|.+-++.-+||..+|++|.|-|...--|-                    ++.+.                    
T Consensus       373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEgld--------------------dplai--------------------  412 (3015)
T KOG0943|consen  373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLD--------------------DPLAI--------------------  412 (3015)
T ss_pred             CCeeEEeehhHHHHHHHhhCCceeeeecccccCCC--------------------Chhhc--------------------
Confidence            46788999999999999999999999998763111                    00000                    


Q ss_pred             eeccCCCCCCCCCCccceecceE-eecCCCCcEEEEecCCCeeEEEecCCcEEEe
Q 026218          183 SSAREESENPASGDEFFTLSPCL-VTLNPGVKITKVAAGGRHTLILSGYRKYEAI  236 (241)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~P~~-v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~w  236 (241)
                                    ......|.- .-.+.+.+|++.++..-..-++|++|+|-+|
T Consensus       413 --------------~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasW  453 (3015)
T KOG0943|consen  413 --------------NKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASW  453 (3015)
T ss_pred             --------------ccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhhH
Confidence                          001222221 2235678999999999889999999999988

>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins

Probab=86.77  E-value=1.6  Score=23.72  Aligned_cols=25  Identities=8%  Similarity=0.048  Sum_probs=22.1

Q ss_pred             CcEEEEecCC-CeeEEEecCCcEEEe
Q 026218          212 VKITKVAAGG-RHTLILSGYRKYEAI  236 (241)
Q Consensus       212 ~~i~~Ia~G~-~hs~alt~~G~vy~w  236 (241)
                      ..+++|++|. ....+++.+|.||..
T Consensus         8 g~l~~isvg~~~~vW~V~~~g~i~~r   33 (35)
T smart00706        8 GELVQVSVGPSDTVWAVNSDGNIYRR   33 (35)
T ss_pred             CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence            3799999999 899999999999963

>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins

Probab=85.19  E-value=1.8  Score=23.53  Aligned_cols=25  Identities=20%  Similarity=0.383  Sum_probs=21.9

Q ss_pred             CCeEEEecCC-CeEEEEEcCCCEEEe
Q 026218          104 ASVVKAAAGW-AHCVSVTEAGEVYTW  128 (241)
Q Consensus       104 ~~i~~ia~G~-~hs~~lt~~G~vy~w  128 (241)
                      ..+++|++|. +...+++.+|.||..
T Consensus         8 g~l~~isvg~~~~vW~V~~~g~i~~r   33 (35)
T smart00706        8 GELVQVSVGPSDTVWAVNSDGNIYRR   33 (35)
T ss_pred             CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence            4699999999 888999999999963

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=84.08  E-value=3.9  Score=32.83  Aligned_cols=70  Identities=10%  Similarity=0.210  Sum_probs=39.3

Q ss_pred             cCceeEEEecCCcEEEcccCCCCCCCCCCcccceeeee-----cCCCCceeEEecCCCeEEEEeCCCCEEEeecC
Q 026218            9 EENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARL-----CGGDSWKDVCGGGCGFALATSESGKLITWGSA   78 (241)
Q Consensus         9 ~~~~~l~~t~~G~vy~wG~n~g~~~~~~~~~~p~~~~~-----~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n   78 (241)
                      .+.+-|+||.+|.+|+|=-.............|..-..     .....|+.+.....|.-++..++|+.|.|-.+
T Consensus        21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~   95 (219)
T PF07569_consen   21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD   95 (219)
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence            34558999999999999755432222211111111100     12344554444345566666777899998665

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=82.86  E-value=10  Score=39.08  Aligned_cols=71  Identities=15%  Similarity=0.174  Sum_probs=48.4

Q ss_pred             eeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCC-CCCeEEEecCCCeE-EEEEc
Q 026218           44 ARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPT-EASVVKAAAGWAHC-VSVTE  121 (241)
Q Consensus        44 ~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~-~~~i~~ia~G~~hs-~~lt~  121 (241)
                      ++-++...|+.++.++..+.++|+++|+|-+.=.-   |           .|++++... ...|+.|++=..|. +|||.
T Consensus       697 l~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~k~---g-----------~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~  762 (1774)
T PF11725_consen  697 LEGLEDRVITAFAVVNDNKFVALDDQGDLTAHQKP---G-----------RPVPLSRPGLSGEIKDLALDEKQNLYALTS  762 (1774)
T ss_pred             ccCCCcCcceeEEEEcCCceEEeccCCccccccCC---C-----------CCccCCCCCCCcchhheeeccccceeEecC
Confidence            33344667777888777799999999988655311   1           144433221 35799999988866 58899


Q ss_pred             CCCEEEe
Q 026218          122 AGEVYTW  128 (241)
Q Consensus       122 ~G~vy~w  128 (241)
                      +|+||.-
T Consensus       763 ~G~Lf~~  769 (1774)
T PF11725_consen  763 TGELFRL  769 (1774)
T ss_pred             CCceeec
Confidence            9999964

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=81.95  E-value=2.1  Score=34.33  Aligned_cols=30  Identities=17%  Similarity=0.378  Sum_probs=26.0

Q ss_pred             CCCeEEEecCCCeEEEEEcCCCEEEecCCC
Q 026218          103 EASVVKAAAGWAHCVSVTEAGEVYTWGWRE  132 (241)
Q Consensus       103 ~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~  132 (241)
                      +.+++.+.|-..+-+|||++|.+|+|--..
T Consensus        12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~   41 (219)
T PF07569_consen   12 GSPVSFLECNGSYLLAITSSGLLYVWNLKK   41 (219)
T ss_pred             CCceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence            457889999999999999999999996543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	241
3kci_A	389	The Third Rld Domain Of Herc2 Length = 389		2e-05
4dnw_A	374	Crystal Structure Of Uvb-Resistance Protein Uvr8 Le		1e-04
4dnv_A	370	Crystal Structure Of The W285f Mutant Of Uvb-Resist		1e-04
4d9s_A	406	Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv		2e-04
4dnu_A	372	Crystal Structure Of The W285a Mutant Of Uvb-Resist		3e-04
4dnu_A	372	Crystal Structure Of The W285a Mutant Of Uvb-Resist		3e-04

>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 60  CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
           CG  F++A ++SG + TWG  D     +  S  H   P          V+  A G  HCV
Sbjct: 272 CGSQFSVALTKSGAVYTWGKGDYHRLGH-GSDDHVRRPRQVQGLQGKKVIAIATGSLHCV 330
Query: 118 SVTEAGEVYTWG 129
             TE GEVYTWG
Sbjct: 331 CCTEDGEVYTWG 342

>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 82/211 (38%), Gaps = 58/211 (27%)
Query: 59  GCGFALATSESG-KLITWGSADDEGQSYLTSGKHGETPEPF-PLPTEA----SVVKAAAG 112
           G    +A S+SG ++ +WG  D           HG + + F PLP +A     + + A G
Sbjct: 64  GADHTVAYSQSGMEVYSWGWGD------FGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 117
Query: 113 WAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRA 172
            +HC++VT  GEV +WG                     ++  G+     TE +    K  
Sbjct: 118 DSHCLAVTMEGEVQSWG---------------------RNQNGQLGLGDTEDSLVPQKIQ 156
Query: 173 GEEVVKRRKTSSAREESE-----------------NPASGDEFFTLSPCLVTLNPGVKIT 215
             E ++ +  ++  E +                  N   GD    L P  VT   G K++
Sbjct: 157 AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMS 216
Query: 216 KVAAGGRHTLILS--------GYRKYEAIGR 238
            VA G RHT+ +S        G+ KY  +G 
Sbjct: 217 MVACGWRHTISVSYSGALYTYGWSKYGQLGH 247

>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 82/211 (38%), Gaps = 58/211 (27%)
Query: 59  GCGFALATSESG-KLITWGSADDEGQSYLTSGKHGETPEPF-PLPTEA----SVVKAAAG 112
           G    +A S+SG ++ +WG  D           HG + + F PLP +A     + + A G
Sbjct: 64  GADHTVAYSQSGMEVYSWGWGD------FGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 117
Query: 113 WAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRA 172
            +HC++VT  GEV +WG                     ++  G+     TE +    K  
Sbjct: 118 DSHCLAVTMEGEVQSWG---------------------RNQNGQLGLGDTEDSLVPQKIQ 156
Query: 173 GEEVVKRRKTSSAREESE-----------------NPASGDEFFTLSPCLVTLNPGVKIT 215
             E ++ +  ++  E +                  N   GD    L P  VT   G K++
Sbjct: 157 AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMS 216
Query: 216 KVAAGGRHTLILS--------GYRKYEAIGR 238
            VA G RHT+ +S        G+ KY  +G 
Sbjct: 217 MVACGWRHTISVSYSGALYTYGWSKYGQLGH 247

>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 82/211 (38%), Gaps = 58/211 (27%)
Query: 59  GCGFALATSESG-KLITWGSADDEGQSYLTSGKHGETPEPF-PLPTEA----SVVKAAAG 112
           G    +A S+SG ++ +WG  D           HG + + F PLP +A     + + A G
Sbjct: 76  GADHTVAYSQSGMEVYSWGWGD------FGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 129
Query: 113 WAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRA 172
            +HC++VT  GEV +WG                     ++  G+     TE +    K  
Sbjct: 130 DSHCLAVTMEGEVQSWG---------------------RNQNGQLGLGDTEDSLVPQKIQ 168
Query: 173 GEEVVKRRKTSSAREESE-----------------NPASGDEFFTLSPCLVTLNPGVKIT 215
             E ++ +  ++  E +                  N   GD    L P  VT   G K++
Sbjct: 169 AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMS 228
Query: 216 KVAAGGRHTLILS--------GYRKYEAIGR 238
            VA G RHT+ +S        G+ KY  +G 
Sbjct: 229 MVACGWRHTISVSYSGALYTYGWSKYGQLGH 259

>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 22  VYMWG---YLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWG 76
           VY WG   +        S + +P+P +   G   K +    CG    LA +  G++ +WG
Sbjct: 80  VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA---CGDSHCLAVTXEGEVQSWG 136
Query: 77  SADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
             +  GQ  L   +    P+         +   AAG  H  +VTE G++Y WGW
Sbjct: 137 R-NQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGWGW 189

>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 81/211 (38%), Gaps = 58/211 (27%)
Query: 59  GCGFALATSESG-KLITWGSADDEGQSYLTSGKHGETPEPF-PLPTEA----SVVKAAAG 112
           G    +A S+SG ++ +WG  D           HG + + F PLP +A     + + A G
Sbjct: 66  GADHTVAYSQSGXEVYSWGWGD------FGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 119
Query: 113 WAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRA 172
            +HC++VT  GEV +WG                     ++  G+     TE +    K  
Sbjct: 120 DSHCLAVTXEGEVQSWG---------------------RNQNGQLGLGDTEDSLVPQKIQ 158
Query: 173 GEEVVKRRKTSSAREESE-----------------NPASGDEFFTLSPCLVTLNPGVKIT 215
             E ++ +  ++  E +                  N   GD    L P  VT   G K +
Sbjct: 159 AFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXS 218
Query: 216 KVAAGGRHTLILS--------GYRKYEAIGR 238
            VA G RHT+ +S        G+ KY  +G 
Sbjct: 219 XVACGWRHTISVSYSGALYTYGWSKYGQLGH 249

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	241
3of7_A	473	Regulator of chromosome condensation; beta-propell	9e-16
3of7_A	473	Regulator of chromosome condensation; beta-propell	1e-15
3of7_A	473	Regulator of chromosome condensation; beta-propell	8e-15
3of7_A	473	Regulator of chromosome condensation; beta-propell	8e-13
3of7_A	473	Regulator of chromosome condensation; beta-propell	9e-12
3of7_A	473	Regulator of chromosome condensation; beta-propell	1e-05
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	9e-16
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	1e-12
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	4e-12
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	3e-10
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	9e-09
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	6e-07
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	3e-05
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	3e-15
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	1e-12
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	4e-12
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	8e-10
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	9e-07
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	6e-05
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	2e-13
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	3e-12
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	4e-10
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	6e-09
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	2e-08
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	1e-12
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	3e-12
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	9e-12
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	2e-11
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	1e-08
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	2e-04
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	1e-06
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	9e-06
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	1e-05
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	1e-04
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	2e-04

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473

 Score = 74.8 bits (184), Expect = 9e-16
 Identities = 26/128 (20%), Positives = 41/128 (32%), Gaps = 21/128 (16%)

Query: 22  VYMWGY-------LPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLIT 74
           +  WG        +     + + +  P    L      + +  G    +L  S+ G L +
Sbjct: 278 LVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGE-HHSLILSQDGDLYS 336

Query: 75  WGSADDEGQ------------SYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEA 122
            G  D   +                 GK    P P  L         AAG  H V+V + 
Sbjct: 337 CGRLDM-FEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQN 395

Query: 123 GEVYTWGW 130
           G  Y+WG+
Sbjct: 396 GIAYSWGF 403

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473

 Score = 74.8 bits (184), Expect = 1e-15
 Identities = 30/191 (15%), Positives = 58/191 (30%), Gaps = 34/191 (17%)

Query: 43  PARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQ---SYLTSGKHGETPE--P 97
                      +           + +   +  WG+     +     L   K  + P   P
Sbjct: 3   HHHHHHMSHIINAQEDY-KHMYLSVQPLDIFCWGT-GSMCELGLGPLAKNKEVKRPRLNP 60

Query: 98  FPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQ 157
           F    EA ++  A G  H +++ E   V++WG            D G+ G   +D++  +
Sbjct: 61  FLPRDEAKIISFAVGGMHTLALDEESNVWSWGC----------NDVGALG---RDTSNAK 107

Query: 158 SALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKV 217
             L    A  S      ++ +   T +       P   +              G K+ ++
Sbjct: 108 EQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAE--------------GHKVVQL 153

Query: 218 AAGGRHTLILS 228
           AA    +  L 
Sbjct: 154 AATDNMSCALF 164

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473

 Score = 72.1 bits (177), Expect = 8e-15
 Identities = 40/219 (18%), Positives = 65/219 (29%), Gaps = 62/219 (28%)

Query: 22  VYMWGY-------LPGTSPEKSPILSPIPARLCGGDSWKDV-CGGGCGFALATSESGKLI 73
           V+ WG               +   L P   R  G    K +  G    FAL  ++  KL+
Sbjct: 225 VFAWGNGQQNQLGRKVMERFRLKTLDP---RPFGLRHVKYIASGENHCFAL--TKDNKLV 279

Query: 74  TWGSADDEGQ----SYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
           +WG  +  GQ      +  G     P+   LP    +   AAG  H + +++ G++Y+ G
Sbjct: 280 SWGL-NQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCG 338

Query: 130 WRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREES 189
                                      +  +P +  P                       
Sbjct: 339 R-------------LDMF---------EVGIPKDNLPEY--------------------- 355

Query: 190 ENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
                        P    LN   K   VAAG  H++ ++
Sbjct: 356 -TYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVA 393

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473

 Score = 66.3 bits (162), Expect = 8e-13
 Identities = 42/244 (17%), Positives = 59/244 (24%), Gaps = 91/244 (37%)

Query: 22  VYMWGY-----L-PGTSPEKSPILSP--IPARLCGGDSWKDVCGGGCGFALATSESGKLI 73
           ++ WG      L  G   +   +  P   P              GG    LA  E   + 
Sbjct: 31  IFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGG-MHTLALDEESNVW 89

Query: 74  TWGSADDEGQ-----------------------SYLTSGKHGETPEPFPLPTEAS----- 105
           +WG  +D G                              +   TP   P  +        
Sbjct: 90  SWGC-NDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGH 148

Query: 106 -VVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQ 164
            VV+ AA      ++   GEVY WG   C        + G  G F +D    Q       
Sbjct: 149 KVVQLAATDNMSCALFSNGEVYAWGTFRC--------NEGILG-FYQDKIKIQK------ 193

Query: 165 APPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHT 224
                                                +P  V       I ++A G  H 
Sbjct: 194 -------------------------------------TPWKVPTFSKYNIVQLAPGKDHI 216

Query: 225 LILS 228
           L L 
Sbjct: 217 LFLD 220

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473

 Score = 63.2 bits (154), Expect = 9e-12
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 8/104 (7%)

Query: 31  TSPEKSPILSPIPARLCGGDSWKDV-CGGGCGFALATSESGKLITWGS-ADDEGQ--SYL 86
           ++P K P  S  P  L  G     +        AL    +G++  WG+   +EG    Y 
Sbjct: 131 STPAKIPRESFPP--LAEGHKVVQLAATDNMSCAL--FSNGEVYAWGTFRCNEGILGFYQ 186

Query: 87  TSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
              K  +TP   P  ++ ++V+ A G  H + + E G V+ WG 
Sbjct: 187 DKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGN 230

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 18/130 (13%), Positives = 34/130 (26%), Gaps = 30/130 (23%)

Query: 22  VYMWGY---------------LPGTSPEKSPILSPIPARLCGGDSWKDV-CGGGCGFALA 65
           +Y  G                             P+P +L     +K V  G     A+ 
Sbjct: 334 LYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAV- 392

Query: 66  TSESGKLITWGSADDEGQSYL---TSGKHGETPEP--FPLPTEASVVKAAAGWAHCVSVT 120
            +++G   +WG   +     +         E P         + +++    G    V   
Sbjct: 393 -AQNGIAYSWGF-GETYA--VGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSV--- 445

Query: 121 EAGEVYTWGW 130
            +G V     
Sbjct: 446 -SGGVKLSDE 454

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423

 Score = 74.7 bits (184), Expect = 9e-16
 Identities = 38/215 (17%), Positives = 56/215 (26%), Gaps = 60/215 (27%)

Query: 22  VYMWGY-----L-PGTSPEKSPILSPIPARLCGGDSWKDV-CGGGCGFALATSESGKLIT 74
           +Y +G      L   TS + S      P  +        +  G      L   E G++  
Sbjct: 96  IYSFGCNDEGALGRDTSEDGS---ESKPDLIDLPGKALCISAGDSHSACL--LEDGRVFA 150

Query: 75  WGS-ADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWREC 133
           WGS  D  G   +     G    P  L         A+G  H V +T AG+V+T G  E 
Sbjct: 151 WGSFRDSHGN--MGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAE- 207

Query: 134 VPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPA 193
                     G  G                                R +  +        
Sbjct: 208 ---------QGQLG--------------------------------RLSERSISGEGRRG 226

Query: 194 SGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
             D    L P  + +        + A    T +  
Sbjct: 227 KRD---LLRPTQLIITRAKPFEAIWATNYCTFMRE 258

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 21/120 (17%), Positives = 35/120 (29%), Gaps = 20/120 (16%)

Query: 21  VVYMWGY-------LPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLI 73
           V++  G              E +                + + GG     +  +   K  
Sbjct: 263 VIWATGLNNFKQLAHETKGKEFALTPIKT-----ELKDIRHIAGGQ-HHTVILTTDLKCS 316

Query: 74  TWGSADDEGQSYL---TSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
             G  +  G+  L         E P      TE  +V    G     +VT  G++Y+WG 
Sbjct: 317 VVGRPEY-GR--LGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWGS 372

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423

 Score = 64.3 bits (157), Expect = 4e-12
 Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 20/125 (16%)

Query: 22  VYMWGY--------------LPGTSPEKSPILSPIPARLCGGDSWKDV-CGGGCGFALAT 66
           V+  G                      K  +L P    +     ++ +     C F    
Sbjct: 200 VFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMR-E 258

Query: 67  SESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKA-AAGWAHCVSVTEAGEV 125
           S++  +   G  ++  Q  L     G+     P+ TE   ++  A G  H V +T   + 
Sbjct: 259 SQTQVIWATGL-NNFKQ--LAHETKGKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKC 315

Query: 126 YTWGW 130
              G 
Sbjct: 316 SVVGR 320

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 18/127 (14%), Positives = 33/127 (25%), Gaps = 23/127 (18%)

Query: 22  VYMWGYLP------GTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITW 75
           V+ WG         G + + +      P  L  G     +  G     +  + +GK+ T 
Sbjct: 148 VFAWGSFRDSHGNMGLTIDGN---KRTPIDLMEGTVCCSIASGA-DHLVILTTAGKVFTV 203

Query: 76  GSADDEGQ-----------SYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVT-EAG 123
           G A+  GQ                 +    P    +          A          +  
Sbjct: 204 GCAEQ-GQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQ 262

Query: 124 EVYTWGW 130
            ++  G 
Sbjct: 263 VIWATGL 269

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423

 Score = 53.9 bits (130), Expect = 9e-09
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 56  CGGGCGFALATSESGKLITWGSADDEGQSYLTSG-KHGETPEPFPLPTEASVVKAAAGWA 114
                      +  G ++  G+ D  GQ  L  G    E     P+      V  +AG  
Sbjct: 31  FHLELPKRR--TVLGNVLVCGNGDV-GQ--LGLGEDILERKRLSPVAGIPDAVDISAGGM 85

Query: 115 HCVSVTEAGEVYTWGW 130
           H + +T++G++Y++G 
Sbjct: 86  HNLVLTKSGDIYSFGC 101

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 28/167 (16%), Positives = 39/167 (23%), Gaps = 49/167 (29%)

Query: 84  SYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDF 143
                  +    E    P +A   + A         T  G V   G              
Sbjct: 4   RRKALTNNNNAGEAEQQPPKAKRARIAFHLELPKRRTVLGNVLVCGN------------- 50

Query: 144 GSAGSFQKDSTGKQSALPTEQAPPSDKR---AGEE---VVKR----------------RK 181
           G  G         +    +  A   D     AG     V+ +                R 
Sbjct: 51  GDVGQLGLGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRD 110

Query: 182 TSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
           TS    ES             P L+ L    K   ++AG  H+  L 
Sbjct: 111 TSEDGSES------------KPDLIDL--PGKALCISAGDSHSACLL 143

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 19/114 (16%)

Query: 22  VYMWGYLP------GTSPEKSPILSPIPARLCGGDSWKDV-CGGGCGFALATSESGKLIT 74
             + G         G   +     + +       +    V CG  C +A+  +  GKL +
Sbjct: 315 CSVVGRPEYGRLGLGDVKDVVEKPTIVKK---LTEKIVSVGCGEVCSYAV--TIDGKLYS 369

Query: 75  WGSADDEGQSYLTSGKHGETPEPFPLPTEA----SVVKAAAGWAHCVSVTEAGE 124
           WGS     Q  L  G   +  EP  + ++      ++ A+ G  H + + +A +
Sbjct: 370 WGS-GVNNQ--LGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKADK 420

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413

 Score = 73.5 bits (181), Expect = 3e-15
 Identities = 45/220 (20%), Positives = 66/220 (30%), Gaps = 64/220 (29%)

Query: 22  VYMWGY-----L-PGTSPEKSPILSPIPARLCGGDSWKDV-CGGGCGFALATSESGKLIT 74
           VY +G      L   TS E S     +P ++   +    V  G     AL  ++ G++  
Sbjct: 80  VYSFGCNDEGALGRDTSVEGS---EMVPGKVELQEKVVQVSAGDSHTAAL--TDDGRVFL 134

Query: 75  WGSA-DDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWREC 133
           WGS  D+ G   L      ++  P  +  +  VVK A+G  H V +T  G++YT G  E 
Sbjct: 135 WGSFRDNNGVIGLLEPMK-KSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGE- 192

Query: 134 VPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPA 193
                     G  G          +     Q                             
Sbjct: 193 ---------QGQLG----RVPELFANRGGRQGLER------------------------- 214

Query: 194 SGDEFFTLSPCLVTLNP-----GVKITKVAAGGRHTLILS 228
                  L P  V L        V+      G   T  +S
Sbjct: 215 ------LLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAIS 248

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413

 Score = 65.8 bits (161), Expect = 1e-12
 Identities = 29/116 (25%), Positives = 42/116 (36%), Gaps = 12/116 (10%)

Query: 22  VYMWGY-------LPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLIT 74
           VY +G         PGT     P    + +      SW    GG     +     GK  +
Sbjct: 253 VYGFGLSNYHQLGTPGTESCFIPQ--NLTSFKNSTKSWVGFSGGQ-HHTVCMDSEGKAYS 309

Query: 75  WGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
            G A+  G+  L  G   E   P  +    +V   A G +   +VT+ G V+ WG 
Sbjct: 310 LGRAEY-GRLGLGEGAE-EKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGM 363

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413

 Score = 63.9 bits (156), Expect = 4e-12
 Identities = 23/131 (17%), Positives = 38/131 (29%), Gaps = 26/131 (19%)

Query: 22  VYMWGYLP------GTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITW 75
           V++WG         G         S +P ++        V  G     +  +  G L T 
Sbjct: 132 VFLWGSFRDNNGVIGLLEPMKK--SMVPVQVQLDVPVVKVASGN-DHLVMLTADGDLYTL 188

Query: 76  GSADDEGQ-----------SYLTSGKHGETPEPFPLPTEAS-----VVKAAAGWAHCVSV 119
           G  +  GQ                 +    P+   L +  S        A  G     ++
Sbjct: 189 GCGEQ-GQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAI 247

Query: 120 TEAGEVYTWGW 130
           +  G VY +G 
Sbjct: 248 SHEGHVYGFGL 258

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413

 Score = 57.3 bits (139), Expect = 8e-10
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 12/80 (15%)

Query: 55  VCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEAS----VVKAA 110
                       +E G ++T G  D  GQ  L  G  GE       P   S    VV+A 
Sbjct: 14  KVKVSHRSHS--TEPGLVLTLGQGDV-GQ--L--G-LGENVMERKKPALVSIPEDVVQAE 65

Query: 111 AGWAHCVSVTEAGEVYTWGW 130
           AG  H V ++++G+VY++G 
Sbjct: 66  AGGMHTVCLSKSGQVYSFGC 85

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 22/116 (18%)

Query: 22  VYMWGY-------LPGTSPEKSPILSPIPARLCGGDSWKDV-CGGGCGFALATSESGKLI 73
            Y  G        L   + EKS     IP  +    +   V CG   G+A+  ++ G++ 
Sbjct: 307 AYSLGRAEYGRLGLGEGAEEKS-----IPTLISRLPAVSSVACGASVGYAV--TKDGRVF 359

Query: 74  TWGSADDEGQSYLTSGKHGETPEPFPLPTEA----SVVKAAAGWAHCVSVTEAGEV 125
            WG      Q  L +G+  +   P  +  +      V+  ++G  H V + +  E 
Sbjct: 360 AWGM-GTNYQ--LGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQ 412

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 30/152 (19%), Positives = 41/152 (26%), Gaps = 49/152 (32%)

Query: 99  PLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQS 158
             P +A         +H    TE G V T G              G  G         + 
Sbjct: 3   SPPADAIPKSKKVKVSHRSHSTEPGLVLTLGQ-------------GDVGQLGLGENVMER 49

Query: 159 ALPTEQAPPSDKR---AGEE---VVKR----------------RKTSSAREESENPASGD 196
             P   + P D     AG      + +                R TS             
Sbjct: 50  KKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTS------------V 97

Query: 197 EFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
           E   + P  V L    K+ +V+AG  HT  L+
Sbjct: 98  EGSEMVPGKVEL--QEKVVQVSAGDSHTAALT 127

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 13/116 (11%)

Query: 22  VYMWGY-------LPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLIT 74
           +Y +G+                P                 + GG     +A +  GKL  
Sbjct: 246 LYTYGWSKYGQLGHGDLEDHLIPHKLEAL----SNSFISQISGGW-RHTMALTSDGKLYG 300

Query: 75  WGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
           WG  +  GQ  + +     +P     P +  VV+ + GW H ++VTE   V+ WG 
Sbjct: 301 WGW-NKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGR 355

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406

 Score = 64.2 bits (157), Expect = 3e-12
 Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 15/119 (12%)

Query: 20  TVVYMWGY-------LPGTSPEKSPILSPIPARLCGGDSWKDV-CGGGCGFALATSESGK 71
             VY WG+          +S   +P+          G   K + CG      LA +  G+
Sbjct: 88  MEVYSWGWGDFGRLGHGNSSDLFTPLPIKALH----GIRIKQIACGDS--HCLAVTMEGE 141

Query: 72  LITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
           + +WG  +  GQ  L   +    P+         +   AAG  H  +VTE G++Y WGW
Sbjct: 142 VQSWGR-NQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGW 199

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406

 Score = 58.0 bits (141), Expect = 4e-10
 Identities = 31/116 (26%), Positives = 38/116 (32%), Gaps = 13/116 (11%)

Query: 22  VYMWGY-------LPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLIT 74
           V  WG        L  T     P           G   K V  G      A +E G L  
Sbjct: 142 VQSWGRNQNGQLGLGDTEDSLVPQKIQAFE----GIRIKMVAAGAE-HTAAVTEDGDLYG 196

Query: 75  WGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
           WG     G   L        PE         +   A GW H +SV+ +G +YT+GW
Sbjct: 197 WGW-GRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGW 251

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406

 Score = 54.6 bits (132), Expect = 6e-09
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 3/92 (3%)

Query: 40  SPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFP 99
                          +  G    ++A      + +WG  +D GQ      +   +P    
Sbjct: 6   MAADEVTAPPRKVLIISAGA-SHSVALLSGDIVCSWGRGED-GQLGHGDAEDRPSPTQLS 63

Query: 100 LPTEASVVKAAAGWAHCVSVTEAG-EVYTWGW 130
                 +V    G  H V+ +++G EVY+WGW
Sbjct: 64  ALDGHQIVSVTCGADHTVAYSQSGMEVYSWGW 95

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 26/113 (23%), Positives = 34/113 (30%), Gaps = 13/113 (11%)

Query: 22  VYMWGYLPGTS-----PEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWG 76
           +Y WG+                 SP+  R         V  G     LA +E   +  WG
Sbjct: 298 LYGWGW--NKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWR-HTLAVTERNNVFAWG 354

Query: 77  SADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
                GQ  L  G        FP   EA  V  A+G     S  +     +W 
Sbjct: 355 R-GTNGQ--L--GIGESVDRNFPKIIEALSVDGASGQHIESSNIDPSSGKSWV 402

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389

 Score = 65.7 bits (161), Expect = 1e-12
 Identities = 35/116 (30%), Positives = 45/116 (38%), Gaps = 13/116 (11%)

Query: 22  VYMWGY-------LPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLIT 74
           V+ WG          G+   K P+          G     V  G   F++A ++SG + T
Sbjct: 234 VWSWGDGDYGKLGRGGSDGCKVPMKIDSLT----GLGVVKVECGS-QFSVALTKSGAVYT 288

Query: 75  WGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
           WG   D  +    S  H   P          V+  A G  HCV  TE GEVYTWG 
Sbjct: 289 WGK-GDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGD 343

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389

 Score = 64.2 bits (157), Expect = 3e-12
 Identities = 29/117 (24%), Positives = 43/117 (36%), Gaps = 13/117 (11%)

Query: 22  VYMWGY-------LPGTSPEKSPILSPIPARLCGGDSWKDV-CGGGCGFALATSESGKLI 73
           +Y WG           +  +  P L         G    D+ CG G    L  ++   + 
Sbjct: 180 LYTWGKGRYGRLGHSDSEDQLKPKLVEALQ----GHRVVDIACGSGDAQTLCLTDDDTVW 235

Query: 74  TWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
           +WG   D G+         + P      T   VVK   G    V++T++G VYTWG 
Sbjct: 236 SWGD-GDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGK 291

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389

 Score = 63.0 bits (154), Expect = 9e-12
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 11/116 (9%)

Query: 22  VYMWGY-------LPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLIT 74
           +Y  GY       + GT    +P  + + + +      K     G    LA S  G++ +
Sbjct: 74  LYATGYGAGGRLGIGGTESVSTP--TLLES-IQHVFIKKVAVNSGGKHCLALSSEGEVYS 130

Query: 75  WGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
           WG   ++G+    +    + P          VV  AAG AH   VT AG++YTWG 
Sbjct: 131 WGE-AEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGK 185

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 11/116 (9%)

Query: 22  VYMWGYLPGTS-----PEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWG 76
           +Y WG+           E + +  P P           + GG      A +  GKL   G
Sbjct: 22  IYGWGH--NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGE-QTLFAVTADGKLYATG 78

Query: 77  SADDEGQSYLTSGKHGETPE--PFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
                G+  +   +   TP             V   +G  HC++++  GEVY+WG 
Sbjct: 79  Y-GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGE 133

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 18/76 (23%), Positives = 25/76 (32%), Gaps = 3/76 (3%)

Query: 55  VCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWA 114
              G     L    SG +  WG     GQ     G   + P P         V+   G  
Sbjct: 7   HSSGR--ENLYFQGSGTIYGWGHNHR-GQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQ 63

Query: 115 HCVSVTEAGEVYTWGW 130
              +VT  G++Y  G+
Sbjct: 64  TLFAVTADGKLYATGY 79

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 11/106 (10%)

Query: 22  VYMWGYLPGTS-----PEKSPILSPIPARLCGGDSWKDV-CGGGCGFALATSESGKLITW 75
           VY WG   G            +  P   +   G     +  G         +E G++ TW
Sbjct: 286 VYTWGK--GDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCC--TEDGEVYTW 341

Query: 76  GSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTE 121
           G  +DEGQ    +    + P          V + A G AH ++ + 
Sbjct: 342 GD-NDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLAWST 386

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 27/110 (24%)

Query: 22  VYMWGY-LPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADD 80
           V  WG    G +   +   S +            + GG   +     ++G +I WG    
Sbjct: 122 VIAWGDDSDGQTTVPAEAQSGV----------TALDGGV--YTALAVKNGGVIAWGD--- 166

Query: 81  EGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
                      G+T  P    +   V   A G  H +++ + G+V  WG 
Sbjct: 167 --------NYFGQTTVPAEAQS--GVDDVAGGIFHSLALKD-GKVIAWGD 205

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282

 Score = 44.6 bits (106), Expect = 9e-06
 Identities = 27/109 (24%), Positives = 40/109 (36%), Gaps = 24/109 (22%)

Query: 22  VYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDE 81
           V  WG             + +PA          + GG     LA    GK++ WG+ +  
Sbjct: 4   VVAWGG------NNDWGEATVPAE--AQSGVDAIAGGY-FHGLALK-GGKVLGWGA-NLN 52

Query: 82  GQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
           GQ               P  T++ V   AAG  H +++ + GEV  WG 
Sbjct: 53  GQL------------TMPAATQSGVDAIAAGNYHSLALKD-GEVIAWGG 88

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 29/111 (26%)

Query: 22  VYMWGY-LPGTSPEKSPILSPIPARLCGGDSWKDV-CGGGCGFALATSESGKLITWGSAD 79
           V  WG    G +   +   S +            +  G    +AL   + GK+I WG  D
Sbjct: 83  VIAWGGNEDGQTTVPAEARSGV----------DAIAAGAWASYAL---KDGKVIAWGD-D 128

Query: 80  DEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
            +GQ+              P   ++ V     G    +   + G V  WG 
Sbjct: 129 SDGQT------------TVPAEAQSGVTALDGGVYTAL-AVKNGGVIAWGD 166

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 13/62 (20%)

Query: 69  SGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTW 128
           +  ++ WG  +D G++              P   ++ V   A G+ H +++   G+V  W
Sbjct: 1   ATSVVAWGGNNDWGEA------------TVPAEAQSGVDAIAGGYFHGLALKG-GKVLGW 47

Query: 129 GW 130
           G 
Sbjct: 48  GA 49

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 18/91 (19%)

Query: 40  SPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFP 99
           + +PA         DV GG           GK+I WG  +   Q+              P
Sbjct: 172 TTVPAE--AQSGVDDVAGGIFHSLALKD--GKVIAWGD-NRYKQT------------TVP 214

Query: 100 LPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
               + V   A+G  + +++   G+V  WG 
Sbjct: 215 TEALSGVSAIASGEWYSLALKN-GKVIAWGS 244

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	241
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	100.0
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	100.0
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	100.0
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	100.0
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	100.0
3of7_A	473	Regulator of chromosome condensation; beta-propell	100.0
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	100.0
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	100.0
3of7_A	473	Regulator of chromosome condensation; beta-propell	100.0
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	100.0
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	99.97
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	99.97
4gbf_A	400	Phikz131; 7-bladed beta-propeller, possibly partic	96.69
4gbf_A	400	Phikz131; 7-bladed beta-propeller, possibly partic	96.06
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	81.09
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	80.82

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A

Probab=100.00  E-value=2.6e-38  Score=275.61  Aligned_cols=177  Identities=25%  Similarity=0.325  Sum_probs=154.7

Q ss_pred             ccccCceeEEEecCCcEEEcccCC-CCCCCCC--CcccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCC
Q 026218            6 SKREENEKMEECKETVVYMWGYLP-GTSPEKS--PILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEG   82 (241)
Q Consensus         6 ~~~~~~~~l~~t~~G~vy~wG~n~-g~~~~~~--~~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~G   82 (241)
                      -.++..|+++++++|+||+||.|. ++++...  ....|+++..+...+|++|+++ ..|++||+++|+||+||.| .+|
T Consensus       126 ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G-~~hs~alt~~G~v~~wG~n-~~G  203 (406)
T 4d9s_A          126 IACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAG-AEHTAAVTEDGDLYGWGWG-RYG  203 (406)
T ss_dssp             EEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEEC-SSEEEEEETTSCEEEEECC-TTS
T ss_pred             EEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecC-CCeEEEEeCCCCEEEeeCC-CCC
Confidence            346788899999999999999986 6766544  4456777777777889999995 4599999999999999999 999


Q ss_pred             ccccCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCCC
Q 026218           83 QSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPT  162 (241)
Q Consensus        83 qlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~~  162 (241)
                      |||++.......|+++..+...+|++|+||.+|+++|+++|+||+||.|.+||||.                        
T Consensus       204 qlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~------------------------  259 (406)
T 4d9s_A          204 NLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGH------------------------  259 (406)
T ss_dssp             TTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCS------------------------
T ss_pred             CCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCC------------------------
Confidence            99999877788899998888889999999999999999999999999999998882                        


Q ss_pred             CCCCCCCcccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEEEeecCC
Q 026218          163 EQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRFL  240 (241)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~~~  240 (241)
                                                      ++......|+++..+.+.+|++|+||.+|++||+++|+||+||+++
T Consensus       260 --------------------------------g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~  305 (406)
T 4d9s_A          260 --------------------------------GDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNK  305 (406)
T ss_dssp             --------------------------------SSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred             --------------------------------CCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCC
Confidence                                            2223567888898888889999999999999999999999999885

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A

Probab=100.00  E-value=3.8e-38  Score=274.52  Aligned_cols=177  Identities=24%  Similarity=0.374  Sum_probs=153.0

Q ss_pred             ccccCceeEEEecCCcEEEcccCC-CCCCCCC--CcccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCC
Q 026218            6 SKREENEKMEECKETVVYMWGYLP-GTSPEKS--PILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEG   82 (241)
Q Consensus         6 ~~~~~~~~l~~t~~G~vy~wG~n~-g~~~~~~--~~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~G   82 (241)
                      -.++..|+++++++|+||+||.|. ++++...  ....|.++..+...++++|+++ ..|+++|+++|+||+||.| .+|
T Consensus       178 va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G-~~ht~~l~~~G~v~~wG~n-~~G  255 (406)
T 4d9s_A          178 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG-WRHTISVSYSGALYTYGWS-KYG  255 (406)
T ss_dssp             EEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC-SSEEEEEETTCCEEEEECC-TTS
T ss_pred             EecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC-CCcEEEEcCCCCEEEeeCC-CCC
Confidence            346778899999999999999986 6666544  3456666766667889999995 5599999999999999999 999


Q ss_pred             ccccCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCCC
Q 026218           83 QSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPT  162 (241)
Q Consensus        83 qlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~~  162 (241)
                      |||.++......|++++.+.+.+|++|+||.+|++||+++|+||+||.|.+||||.                        
T Consensus       256 qlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~------------------------  311 (406)
T 4d9s_A          256 QLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGV------------------------  311 (406)
T ss_dssp             TTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCS------------------------
T ss_pred             CCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCC------------------------
Confidence            99999877888899998888889999999999999999999999999999998882                        


Q ss_pred             CCCCCCCcccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEEEeecCC
Q 026218          163 EQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRFL  240 (241)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~~~  240 (241)
                                                      ++......|.++..+...+|++|+||.+|++||+++|+||+||+++
T Consensus       312 --------------------------------g~~~~~~~p~~v~~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~  357 (406)
T 4d9s_A          312 --------------------------------GNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGT  357 (406)
T ss_dssp             --------------------------------SSSSCEEEEEEECCGGGCCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred             --------------------------------CCCCCCccCEEEeccCCCcEEEEEeCCCeEEEEeCCCCEEEecCCC
Confidence                                            2223466788888777789999999999999999999999999986

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.9e-38  Score=274.97  Aligned_cols=178  Identities=21%  Similarity=0.260  Sum_probs=155.1

Q ss_pred             ccccCceeEEEecCCcEEEcccCC-CCCCCCC--CcccceeeeecCCCCceeEEecC-CCeEEEEeCCCCEEEeecCCCC
Q 026218            6 SKREENEKMEECKETVVYMWGYLP-GTSPEKS--PILSPIPARLCGGDSWKDVCGGG-CGFALATSESGKLITWGSADDE   81 (241)
Q Consensus         6 ~~~~~~~~l~~t~~G~vy~wG~n~-g~~~~~~--~~~~p~~~~~~~~~~i~~v~~~~-~~h~~~lt~~G~vy~wG~n~~~   81 (241)
                      -.++..|+++++++|+||+||.|. ++++...  ....|+++..+...++++|+++. ..|+++|+++|+||+||.| .+
T Consensus       164 va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n-~~  242 (389)
T 3kci_A          164 VAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDG-DY  242 (389)
T ss_dssp             EEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECC-GG
T ss_pred             EEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCC-CC
Confidence            346788899999999999999986 6666544  44567777777788899999953 2499999999999999999 99


Q ss_pred             CccccCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCC
Q 026218           82 GQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALP  161 (241)
Q Consensus        82 GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~  161 (241)
                      ||||.+.......|++++.+.+.+|++|+||.+|++||+++|+||+||.|.+||||.                       
T Consensus       243 GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~-----------------------  299 (389)
T 3kci_A          243 GKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGH-----------------------  299 (389)
T ss_dssp             GTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCS-----------------------
T ss_pred             CCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCC-----------------------
Confidence            999999877778899998887889999999999999999999999999999998882                       


Q ss_pred             CCCCCCCCcccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEEEeecCC
Q 026218          162 TEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRFL  240 (241)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~~~  240 (241)
                                                       ++......|++|..+.+.+|++|+||.+|++||+++|+||+||+++
T Consensus       300 ---------------------------------g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~  345 (389)
T 3kci_A          300 ---------------------------------GSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDND  345 (389)
T ss_dssp             ---------------------------------SSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred             ---------------------------------CCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCC
Confidence                                             2223567899999888899999999999999999999999999986

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=100.00  E-value=4.9e-38  Score=272.42  Aligned_cols=175  Identities=21%  Similarity=0.276  Sum_probs=152.6

Q ss_pred             ccCceeEEEecCCcEEEcccCC-CCCCCCC--CcccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCCcc
Q 026218            8 REENEKMEECKETVVYMWGYLP-GTSPEKS--PILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQS   84 (241)
Q Consensus         8 ~~~~~~l~~t~~G~vy~wG~n~-g~~~~~~--~~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~Gql   84 (241)
                      ++..|+++|+++|+||+||.|. ++++...  ....|+++..+...+|++|+++ ..|++||+++|+||+||.| .+|||
T Consensus       114 ~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G-~~hs~alt~~G~v~~wG~n-~~GqL  191 (389)
T 3kci_A          114 SGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG-GAHSACVTAAGDLYTWGKG-RYGRL  191 (389)
T ss_dssp             TTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC-SSEEEEEETTSCEEEEECC-GGGTT
T ss_pred             cCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC-cCeEEEEeCCCeEEEeCCC-CCCCc
Confidence            5778999999999999999986 6666544  3456777776777789999995 4599999999999999999 99999


Q ss_pred             ccCCCCCcCCceeeCCCCCCCeEEEecCC--CeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCCC
Q 026218           85 YLTSGKHGETPEPFPLPTEASVVKAAAGW--AHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPT  162 (241)
Q Consensus        85 G~~~~~~~~~p~~v~~~~~~~i~~ia~G~--~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~~  162 (241)
                      |++.......|++++.+...+|++|+||.  +|+++|+++|+||+||.|.+||||.                        
T Consensus       192 G~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~------------------------  247 (389)
T 3kci_A          192 GHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGR------------------------  247 (389)
T ss_dssp             CSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSS------------------------
T ss_pred             CCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCC------------------------
Confidence            99988778889999888889999999995  8999999999999999999998883                        


Q ss_pred             CCCCCCCcccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEEEeecCC
Q 026218          163 EQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRFL  240 (241)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~~~  240 (241)
                                                      ++......|.+++.+.+.+|++|+||.+|++||+++|+||+||+++
T Consensus       248 --------------------------------g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~  293 (389)
T 3kci_A          248 --------------------------------GGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGD  293 (389)
T ss_dssp             --------------------------------SSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCG
T ss_pred             --------------------------------CCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCC
Confidence                                            1222466788898888889999999999999999999999999975

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B

Probab=100.00  E-value=4.2e-37  Score=268.44  Aligned_cols=176  Identities=19%  Similarity=0.174  Sum_probs=146.8

Q ss_pred             ccccCceeEEEecCCcEEEcccCC-CCCCCCCC-------------cccceeeeec-----CCCCceeEEecCCCeEEEE
Q 026218            6 SKREENEKMEECKETVVYMWGYLP-GTSPEKSP-------------ILSPIPARLC-----GGDSWKDVCGGGCGFALAT   66 (241)
Q Consensus         6 ~~~~~~~~l~~t~~G~vy~wG~n~-g~~~~~~~-------------~~~p~~~~~~-----~~~~i~~v~~~~~~h~~~l   66 (241)
                      -.++..|+++|+++|+||+||.|. ++++....             ...|+.+.++     ...+|++|+|+ ..|++||
T Consensus       169 ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G-~~hs~al  247 (413)
T 1a12_A          169 VASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCG-AYFTFAI  247 (413)
T ss_dssp             EEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEE-TTEEEEE
T ss_pred             EEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeC-CCEEEEE
Confidence            346778899999999999999986 67765431             2456666654     34678999995 4599999


Q ss_pred             eCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCC--CCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCC
Q 026218           67 SESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTE--ASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFG  144 (241)
Q Consensus        67 t~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~--~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~  144 (241)
                      +++|+||+||.| .+||||.+.......|+.++.+.+  .+|++|+||.+|++||+++|+||+||.|.+||||.-.    
T Consensus       248 t~~G~v~~wG~n-~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~----  322 (413)
T 1a12_A          248 SHEGHVYGFGLS-NYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGE----  322 (413)
T ss_dssp             ETTCCEEEEECC-TTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCT----
T ss_pred             eCCCCEEEEeCC-CCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCC----
Confidence            999999999999 999999987777778888877655  6799999999999999999999999999999888210    


Q ss_pred             CCCccccCCCCCcCCCCCCCCCCCCcccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCee
Q 026218          145 SAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHT  224 (241)
Q Consensus       145 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs  224 (241)
                                                                         +......|++|..+.  +|++|+||.+|+
T Consensus       323 ---------------------------------------------------~~~~~~~P~~v~~l~--~v~~v~~G~~hs  349 (413)
T 1a12_A          323 ---------------------------------------------------GAEEKSIPTLISRLP--AVSSVACGASVG  349 (413)
T ss_dssp             ---------------------------------------------------TCCCEEEEEECCSSS--SEEEEEECSSEE
T ss_pred             ---------------------------------------------------CCccccCCEEecccC--ceeEEEECcceE
Confidence                                                               122466788888765  899999999999


Q ss_pred             EEEecCCcEEEeecCC
Q 026218          225 LILSGYRKYEAIGRFL  240 (241)
Q Consensus       225 ~alt~~G~vy~wG~~~  240 (241)
                      +||+++|+||+||.++
T Consensus       350 ~alt~~G~v~~wG~n~  365 (413)
T 1a12_A          350 YAVTKDGRVFAWGMGT  365 (413)
T ss_dssp             EEEETTSCEEEEECCT
T ss_pred             EEEeCCCCEEEecCCC
Confidence            9999999999999985

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-36  Score=266.65  Aligned_cols=226  Identities=18%  Similarity=0.236  Sum_probs=157.3

Q ss_pred             cccCceeEEEecCCcEEEcccCC-CCCCCCCC-------------------------cccceeeee--c----CCCCcee
Q 026218            7 KREENEKMEECKETVVYMWGYLP-GTSPEKSP-------------------------ILSPIPARL--C----GGDSWKD   54 (241)
Q Consensus         7 ~~~~~~~l~~t~~G~vy~wG~n~-g~~~~~~~-------------------------~~~p~~~~~--~----~~~~i~~   54 (241)
                      .++..|+++|+++|+||+||.|. ++++....                         ...|+++..  +    ...+|++
T Consensus        73 a~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~  152 (473)
T 3of7_A           73 AVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQ  152 (473)
T ss_dssp             EECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEE
T ss_pred             EeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEE
Confidence            46788999999999999999986 66665432                         235665552  2    3578999


Q ss_pred             EEecCCCeEEEEeCCCCEEEeec--CCCCCccccCCC--CCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecC
Q 026218           55 VCGGGCGFALATSESGKLITWGS--ADDEGQSYLTSG--KHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW  130 (241)
Q Consensus        55 v~~~~~~h~~~lt~~G~vy~wG~--n~~~GqlG~~~~--~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~  130 (241)
                      |+++ ..|++||+++|+||+||.  + .+||||+...  .....|++++.+.+.+|++|+||.+|++||+++|+||+||.
T Consensus       153 va~G-~~hs~alt~~G~vy~wG~n~~-~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~  230 (473)
T 3of7_A          153 LAAT-DNMSCALFSNGEVYAWGTFRC-NEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGN  230 (473)
T ss_dssp             EEEC-SSEEEEEETTSCEEEEECEEE-TTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred             EEcc-CCEEEEEeCCCeEEEeeCCcC-CCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeC
Confidence            9995 459999999999999998  5 6899998543  34556888888877889999999999999999999999999


Q ss_pred             CCCCCCCCccccCCCCCccccCCCCCcCCCCCCCCCCCCcccCce--ee-eeceeeeccCCCCCCCCCCc----cceecc
Q 026218          131 RECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEE--VV-KRRKTSSAREESENPASGDE----FFTLSP  203 (241)
Q Consensus       131 n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~----~~~~~P  203 (241)
                      |.+||||.-.........+....      .....+...+.+....  ++ ..+...++.........++.    .....|
T Consensus       231 n~~GqLG~~~~~~~~~~~~~p~~------~~~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P  304 (473)
T 3of7_A          231 GQQNQLGRKVMERFRLKTLDPRP------FGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKP  304 (473)
T ss_dssp             CTTSTTSSCCCGGGTTTTCSCEE------CSCCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEE
T ss_pred             CCCCCCCCCccccccccccCcee------cCCcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeecc
Confidence            99999985321100000000000      0000111111111111  11 12233444333333333332    356789


Q ss_pred             eEeecCCCCcEEEEecCCCeeEEEecCCcEEEeecCC
Q 026218          204 CLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRFL  240 (241)
Q Consensus       204 ~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~~~  240 (241)
                      ++|..+.+.+|++|+||.+|++||+++|+||+||+++
T Consensus       305 ~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~  341 (473)
T 3of7_A          305 KRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLD  341 (473)
T ss_dssp             EECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEECT
T ss_pred             ccccccCCccEEEEEeCCCeEEEEeCCCeEEEEECCC
Confidence            9999888889999999999999999999999999976

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B

Probab=100.00  E-value=1.6e-36  Score=264.78  Aligned_cols=176  Identities=18%  Similarity=0.202  Sum_probs=141.6

Q ss_pred             cccCceeEEEecCCcEEEccc--CC-CCCCCCCCcc-cceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCC
Q 026218            7 KREENEKMEECKETVVYMWGY--LP-GTSPEKSPIL-SPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEG   82 (241)
Q Consensus         7 ~~~~~~~l~~t~~G~vy~wG~--n~-g~~~~~~~~~-~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~G   82 (241)
                      .++..|+++|+++|+||+||.  |. ++++...... ...|.+++...+|++|+++ ..|+++|+++|+||+||.| .+|
T Consensus       117 a~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~G-~~hs~alt~~G~v~~wG~n-~~G  194 (413)
T 1a12_A          117 SAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASG-NDHLVMLTADGDLYTLGCG-EQG  194 (413)
T ss_dssp             EECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEEC-SSEEEEEETTSCEEEEECC-TTS
T ss_pred             ecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEecCCCCEEEEEec-CceEEEEcCCCCEEEeeCC-CCC
Confidence            357788999999999999997  43 5555443222 2234555667789999995 5599999999999999999 999


Q ss_pred             ccccCCCC-----------CcCCceeeCCC-----CCCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCC
Q 026218           83 QSYLTSGK-----------HGETPEPFPLP-----TEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSA  146 (241)
Q Consensus        83 qlG~~~~~-----------~~~~p~~v~~~-----~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~  146 (241)
                      |||.+...           ....|+.+.++     ...+|++|+||.+|++||+++|+||+||.|.+||||.        
T Consensus       195 qLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~--------  266 (413)
T 1a12_A          195 QLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGT--------  266 (413)
T ss_dssp             TTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSC--------
T ss_pred             ccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCC--------
Confidence            99986432           12467777664     3578999999999999999999999999999998883        


Q ss_pred             CccccCCCCCcCCCCCCCCCCCCcccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCC--CcEEEEecCCCee
Q 026218          147 GSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPG--VKITKVAAGGRHT  224 (241)
Q Consensus       147 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~--~~i~~Ia~G~~hs  224 (241)
                                                                      ++......|++|..+.+  .+|++|+||.+|+
T Consensus       267 ------------------------------------------------~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs  298 (413)
T 1a12_A          267 ------------------------------------------------PGTESCFIPQNLTSFKNSTKSWVGFSGGQHHT  298 (413)
T ss_dssp             ------------------------------------------------SSCSCEEEEEECGGGCCTTCCEEEEEECSSEE
T ss_pred             ------------------------------------------------CCCCcccccEEchhccCCCceEEEEecccceE
Confidence                                                            12224577888887766  6799999999999


Q ss_pred             EEEecCCcEEEeecCC
Q 026218          225 LILSGYRKYEAIGRFL  240 (241)
Q Consensus       225 ~alt~~G~vy~wG~~~  240 (241)
                      +||+++|+||+||+++
T Consensus       299 ~al~~~G~v~~wG~n~  314 (413)
T 1a12_A          299 VCMDSEGKAYSLGRAE  314 (413)
T ss_dssp             EEEETTSCEEEEECCG
T ss_pred             EEEeCCCCEEEeeCCC
Confidence            9999999999999975

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}

Probab=100.00  E-value=4.9e-36  Score=262.43  Aligned_cols=217  Identities=15%  Similarity=0.107  Sum_probs=160.3

Q ss_pred             cccCceeEEEecCCcEEEccc--CC-CCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCCc
Q 026218            7 KREENEKMEECKETVVYMWGY--LP-GTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQ   83 (241)
Q Consensus         7 ~~~~~~~l~~t~~G~vy~wG~--n~-g~~~~~~~~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~Gq   83 (241)
                      .++..|+++|+++|+||+||.  |. ++++.......++|++++...+|++|+++ ..|++||+++|+||+||.| .+||
T Consensus       133 a~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G-~~hs~alt~~G~v~~wG~n-~~Gq  210 (423)
T 3mvd_K          133 SAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG-ADHLVILTTAGKVFTVGCA-EQGQ  210 (423)
T ss_dssp             EECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC-SSEEEEEETTSCEEEEECC-TTST
T ss_pred             EcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC-CCeEEEEecCCeEEEeeCC-cCCc
Confidence            357788999999999999997  54 77776666667888888888899999995 5699999999999999999 9999


Q ss_pred             cccCCC-----------CCcCCceeeCCCCCCCeEEEecCCCeEEEE-EcCCCEEEecCCCCCCCCCccc------cCCC
Q 026218           84 SYLTSG-----------KHGETPEPFPLPTEASVVKAAAGWAHCVSV-TEAGEVYTWGWRECVPSAKVTR------DFGS  145 (241)
Q Consensus        84 lG~~~~-----------~~~~~p~~v~~~~~~~i~~ia~G~~hs~~l-t~~G~vy~wG~n~~gQlG~l~~------~~~~  145 (241)
                      ||.+..           .....|+++..+...+|++|+||.+|++++ +++|+||+||.|.+||||.-..      .|. 
T Consensus       211 LG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~-  289 (423)
T 3mvd_K          211 LGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPI-  289 (423)
T ss_dssp             TSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEE-
T ss_pred             cCCCcccccccccccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeE-
Confidence            999743           245578999888888999999999999999 5899999999999999987110      110 


Q ss_pred             CCccccCCCCCcCCCCCCCCCCCCcccCce--ee-eeceeeeccCCCCCCCCCCc-cceecceEeecCCCCcEEEEecCC
Q 026218          146 AGSFQKDSTGKQSALPTEQAPPSDKRAGEE--VV-KRRKTSSAREESENPASGDE-FFTLSPCLVTLNPGVKITKVAAGG  221 (241)
Q Consensus       146 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~-~~~~~P~~v~~~~~~~i~~Ia~G~  221 (241)
                        .+        .   ...+...+.+....  +. ..+...++.........++. .....|++++.+.+ +|++|+||.
T Consensus       290 --~~--------~---~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~-~v~~ia~G~  355 (423)
T 3mvd_K          290 --KT--------E---LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGE  355 (423)
T ss_dssp             --EE--------C---CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCS-CEEEEEEET
T ss_pred             --Ec--------C---CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCC-CEEEEEcCC
Confidence              00        0   00011111111111  11 12234444433344444443 23568888888776 899999999


Q ss_pred             CeeEEEecCCcEEEeecCC
Q 026218          222 RHTLILSGYRKYEAIGRFL  240 (241)
Q Consensus       222 ~hs~alt~~G~vy~wG~~~  240 (241)
                      +|++||+++|+||+||.++
T Consensus       356 ~hs~alt~~G~v~~wG~n~  374 (423)
T 3mvd_K          356 VCSYAVTIDGKLYSWGSGV  374 (423)
T ss_dssp             TEEEEEETTSCEEEEECCT
T ss_pred             CeEEEEcCCCCEEEECCCC
Confidence            9999999999999999986

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.7e-36  Score=264.04  Aligned_cols=186  Identities=20%  Similarity=0.285  Sum_probs=143.9

Q ss_pred             ccccCceeEEEecCCcEEEcccCC-CCCCCCC------CcccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecC
Q 026218            6 SKREENEKMEECKETVVYMWGYLP-GTSPEKS------PILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSA   78 (241)
Q Consensus         6 ~~~~~~~~l~~t~~G~vy~wG~n~-g~~~~~~------~~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n   78 (241)
                      -.++..|++++|++|+||+||.|. ++++...      ....|.++.+   .+|++|+++ ..|++||+++|+||+||.|
T Consensus       209 va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~---~~v~~Ia~G-~~hs~alt~~G~v~~wG~n  284 (473)
T 3of7_A          209 LAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL---RHVKYIASG-ENHCFALTKDNKLVSWGLN  284 (473)
T ss_dssp             EEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSC---CSEEEEEEC-SSEEEEEETTSCEEEEEEC
T ss_pred             EEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCC---cceEEEecC-CCeEEEEecCCCEEEeCCC
Confidence            346788899999999999999986 6776543      2345555533   579999995 4599999999999999999


Q ss_pred             CCCCccccCCCC----CcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCC
Q 026218           79 DDEGQSYLTSGK----HGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDST  154 (241)
Q Consensus        79 ~~~GqlG~~~~~----~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~  154 (241)
                       .+||||++...    ....|+++..+.+.+|++|+||.+|++||+++|+||+||.|.+||||.-...      +..   
T Consensus       285 -~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~------~~~---  354 (473)
T 3of7_A          285 -QFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDN------LPE---  354 (473)
T ss_dssp             -TTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGG------CCT---
T ss_pred             -CCCCcCCCCcccCCceeeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccc------ccc---
Confidence             99999997543    3456888888888899999999999999999999999999999988842100      000   


Q ss_pred             CCcCCCCCCCCCCCCcccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEE
Q 026218          155 GKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYE  234 (241)
Q Consensus       155 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy  234 (241)
                                               ....        ...+.......|..+..+.  +|++|+||.+|++||+++|+||
T Consensus       355 -------------------------~~~~--------~~~~~~~~~~~P~~v~~~~--~v~~Ia~G~~hs~al~~~G~vy  399 (473)
T 3of7_A          355 -------------------------YTYK--------DVHGKARAVPLPTKLNNVP--KFKSVAAGSHHSVAVAQNGIAY  399 (473)
T ss_dssp             -------------------------TCEE--------CTTSCEEEEEEEEECCSSC--CEEEEEECSSEEEEEETTSCEE
T ss_pred             -------------------------cccc--------ccCCceeeeccCcccCCCC--ceEEEEeCCCeEEEEeCCCcEE
Confidence                                     0000        0011222456677776543  7999999999999999999999


Q ss_pred             EeecCC
Q 026218          235 AIGRFL  240 (241)
Q Consensus       235 ~wG~~~  240 (241)
                      +||+++
T Consensus       400 ~wG~n~  405 (473)
T 3of7_A          400 SWGFGE  405 (473)
T ss_dssp             EEECCT
T ss_pred             EeeCCC
Confidence            999986

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}

Probab=100.00  E-value=9.3e-36  Score=260.65  Aligned_cols=172  Identities=20%  Similarity=0.246  Sum_probs=137.9

Q ss_pred             cccCceeEEEecCCcEEEcccCC-CCCCCCCC-cccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCCcc
Q 026218            7 KREENEKMEECKETVVYMWGYLP-GTSPEKSP-ILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQS   84 (241)
Q Consensus         7 ~~~~~~~l~~t~~G~vy~wG~n~-g~~~~~~~-~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~Gql   84 (241)
                      .++..|.++++++|+||+||.|. ++++.... ...+.|..+....++++|+++. .|+++|+++|+||+||.| .+|||
T Consensus        30 a~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~v~~va~G~-~h~~~l~~~G~v~~wG~n-~~GqL  107 (423)
T 3mvd_K           30 AFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISAGG-MHNLVLTKSGDIYSFGCN-DEGAL  107 (423)
T ss_dssp             CCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSSEEEEEECS-SEEEEEETTSCEEEEECC-SSSTT
T ss_pred             ecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCCceEEeeCC-CeEEEEeCCCeEEEeECC-CCcCC
Confidence            45777899999999999999987 77776643 2233343444445789999954 599999999999999999 99999


Q ss_pred             ccCCCCC--cCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecC--CCCCCCCCccccCCCCCccccCCCCCcCCC
Q 026218           85 YLTSGKH--GETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW--RECVPSAKVTRDFGSAGSFQKDSTGKQSAL  160 (241)
Q Consensus        85 G~~~~~~--~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~--n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~  160 (241)
                      |.+....  ...|.++..+  .+|++|+||.+|++||+++|+||+||.  |.+||||..                     
T Consensus       108 G~~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~---------------------  164 (423)
T 3mvd_K          108 GRDTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLT---------------------  164 (423)
T ss_dssp             CSCCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESB---------------------
T ss_pred             CCCCcCCccccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcC---------------------
Confidence            9986543  5678888754  579999999999999999999999999  999877731                     


Q ss_pred             CCCCCCCCCcccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEEEeecCC
Q 026218          161 PTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRFL  240 (241)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~~~  240 (241)
                                                         .......|  +..+.+.+|++|+||.+|++||+++|+||+||.++
T Consensus       165 -----------------------------------~~~~~~~p--~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~  207 (423)
T 3mvd_K          165 -----------------------------------IDGNKRTP--IDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAE  207 (423)
T ss_dssp             -----------------------------------TTBCEEEE--EESSTTCCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred             -----------------------------------CCCCCcee--eEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCc
Confidence                                               11123344  44466789999999999999999999999999875

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=99.97  E-value=7.3e-31  Score=217.92  Aligned_cols=177  Identities=20%  Similarity=0.189  Sum_probs=122.7

Q ss_pred             ccccCceeEEEecCCcEEEcccCC-CCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCCcc
Q 026218            6 SKREENEKMEECKETVVYMWGYLP-GTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQS   84 (241)
Q Consensus         6 ~~~~~~~~l~~t~~G~vy~wG~n~-g~~~~~~~~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~Gql   84 (241)
                      -.++..|+++++ +|+||+||.|. ++++.      |.+    ...+|++|+++ ..|+++|+ +|+||+||.| .+|||
T Consensus        29 ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~------p~~----~~~~i~~ia~G-~~hs~~l~-~G~v~~wG~n-~~Gql   94 (282)
T 3qhy_B           29 IAGGYFHGLALK-GGKVLGWGANLNGQLTM------PAA----TQSGVDAIAAG-NYHSLALK-DGEVIAWGGN-EDGQT   94 (282)
T ss_dssp             EEECSSEEEEEE-TTEEEEEECCSSSTTSC------CGG----GGSCCCEEEEC-SSEEEEEE-TTEEEEEECC-TTSTT
T ss_pred             EEeCCCeEEEEE-CCEEEEEeCCCCCCCCC------Ccc----CCCCEEEEEeC-CCEEEEEE-CCEEEEeeCC-CCCCC
Confidence            346778899998 99999999986 66652      221    13478999995 45999996 9999999999 99999


Q ss_pred             ccCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCCCCC
Q 026218           85 YLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQ  164 (241)
Q Consensus        85 G~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~~~~  164 (241)
                      |+        |+++    ..+|++|+||.+|+++|+ +|+||+||.|.+||||......                   ..
T Consensus        95 g~--------P~~~----~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~-------------------~~  142 (282)
T 3qhy_B           95 TV--------PAEA----RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQ-------------------SG  142 (282)
T ss_dssp             CC--------CGGG----SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGG-------------------SS
T ss_pred             CC--------Cccc----CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCC-------------------CC
Confidence            84        4333    247999999999999999 9999999999999888421100                   00


Q ss_pred             CCCCCcccCc--eeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEEEeecCCC
Q 026218          165 APPSDKRAGE--EVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRFLM  241 (241)
Q Consensus       165 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~~~~  241 (241)
                      +.....+...  .+...+...++.......            .++.....+|++|+||.+|++|| ++|+||+||+++.
T Consensus       143 i~~i~~G~~~~~~l~~G~v~~wG~n~~gql------------g~p~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~  208 (282)
T 3qhy_B          143 VTALDGGVYTALAVKNGGVIAWGDNYFGQT------------TVPAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRY  208 (282)
T ss_dssp             EEEEEECSSEEEEEETTEEEEEECCTTSTT------------SCCGGGGSSEEEEEECSSEEEEE-ETTEEEEEECCTT
T ss_pred             eEEEEcccCEEEEEECCEEEEecCCCCCCC------------CCceecCCCeEEEEecCCEEEEE-ECCeEEEEECCCC
Confidence            0000000111  111111222221111110            14444557899999999999999 8999999999863

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=99.97  E-value=1.4e-30  Score=216.24  Aligned_cols=178  Identities=17%  Similarity=0.224  Sum_probs=122.7

Q ss_pred             cccccCceeEEEecCCcEEEcccCC-CCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCCc
Q 026218            5 GSKREENEKMEECKETVVYMWGYLP-GTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQ   83 (241)
Q Consensus         5 ~~~~~~~~~l~~t~~G~vy~wG~n~-g~~~~~~~~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~Gq   83 (241)
                      .-.++..|+++++ +|+||+||.|. ++++.      |.++    ..+|++|+++ ..|+++|+ +|+||+||.| .+||
T Consensus        67 ~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~------P~~~----~~~v~~ia~G-~~hs~al~-~G~v~~wG~n-~~gq  132 (282)
T 3qhy_B           67 AIAAGNYHSLALK-DGEVIAWGGNEDGQTTV------PAEA----RSGVDAIAAG-AWASYALK-DGKVIAWGDD-SDGQ  132 (282)
T ss_dssp             EEEECSSEEEEEE-TTEEEEEECCTTSTTCC------CGGG----SSSEEEEEEE-TTEEEEEE-TTEEEEEECC-TTST
T ss_pred             EEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC------Cccc----CCCeEEEECc-CCEEEEEe-CCeEEEecCC-CCCc
Confidence            3446788899996 99999999986 66653      3333    2478999995 45999999 9999999999 9999


Q ss_pred             cccCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCCCC
Q 026218           84 SYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTE  163 (241)
Q Consensus        84 lG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~~~  163 (241)
                      ||..        .    +...+|++|+||.+|+++|+ +|+||+||.|.+||||.....                .   .
T Consensus       133 lg~~--------~----~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p~~~----------------~---~  180 (282)
T 3qhy_B          133 TTVP--------A----EAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVPAEA----------------Q---S  180 (282)
T ss_dssp             TSCC--------G----GGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGGG----------------G---S
T ss_pred             CCCC--------c----cCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCCceec----------------C---C
Confidence            9732        1    12356999999999999999 899999999999988842110                0   0


Q ss_pred             CCCCCCcccCc--eeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEEEeecCCC
Q 026218          164 QAPPSDKRAGE--EVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRFLM  241 (241)
Q Consensus       164 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~~~~  241 (241)
                      .+...+.+...  .+...+...++......        .-.|.  +.  ..+|++|+||.+|++||+ +|+||+||+++.
T Consensus       181 ~v~~i~~G~~hs~al~~G~v~~wG~n~~gq--------lg~p~--~~--~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~  247 (282)
T 3qhy_B          181 GVDDVAGGIFHSLALKDGKVIAWGDNRYKQ--------TTVPT--EA--LSGVSAIASGEWYSLALK-NGKVIAWGSSRT  247 (282)
T ss_dssp             SEEEEEECSSEEEEEETTEEEEEECCTTST--------TCCCG--GG--GSSCCEEEECSSCEEEEE-TTEEEEESTTCC
T ss_pred             CeEEEEecCCEEEEEECCeEEEEECCCCCC--------CCCCc--cc--CCCceEEEcCCCEEEEEE-CCEEEEecCCCC
Confidence            01111111111  11112222332111111        12343  22  247999999999999999 999999999863

>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}

Probab=96.69  E-value=0.0046  Score=49.20  Aligned_cols=67  Identities=22%  Similarity=0.310  Sum_probs=53.6

Q ss_pred             ceeEEecCCCeEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCC
Q 026218           52 WKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWR  131 (241)
Q Consensus        52 i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n  131 (241)
                      +..|+. ..+|.+++--+++||+||++ +.||+-+...             ..+..++++|.++++-++.-..+-.||..
T Consensus       311 i~~VsG-~y~H~vvi~gd~el~sFG~~-sNGQ~~ip~t-------------agPfla~~AG~~fTVTVn~~nyv~FWGDS  375 (400)
T 4gbf_A          311 IGGVSG-LYTHYTVMYGDGQIAFFGNN-DNGQCDVDDH-------------AGPYIQLAAGHNFTVTVNTLNQVMFWGDS  375 (400)
T ss_dssp             CCCCBC-SSSEEEC-CTTTCCCEEECC-TTSTTCCCGG-------------GCCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred             cccccc-cccceEEEecCceeEEeccC-CCCceecCCC-------------cchHHhHhccCCeEEEEeceeeEEEecCC
Confidence            334443 45599999999999999999 8999854211             34689999999999999999999999987


Q ss_pred             CC
Q 026218          132 EC  133 (241)
Q Consensus       132 ~~  133 (241)
                      -.
T Consensus       376 PD  377 (400)
T 4gbf_A          376 PD  377 (400)
T ss_dssp             TT
T ss_pred             CC
Confidence            65

>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}

Probab=96.06  E-value=0.0096  Score=47.41  Aligned_cols=68  Identities=12%  Similarity=0.100  Sum_probs=55.2

Q ss_pred             CCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCCCCCCCCCCcccCceeeeeceee
Q 026218          104 ASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTS  183 (241)
Q Consensus       104 ~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (241)
                      ..|.+|+--+.|.+++--++++|+||.++.||+-..+                                           
T Consensus       309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~-------------------------------------------  345 (400)
T 4gbf_A          309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDD-------------------------------------------  345 (400)
T ss_dssp             SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCG-------------------------------------------
T ss_pred             CccccccccccceEEEecCceeEEeccCCCCceecCC-------------------------------------------
Confidence            4588889999999999999999999999997654211                                           


Q ss_pred             eccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEEEeecCC
Q 026218          184 SAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRFL  240 (241)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~~~  240 (241)
                                      .          ..+..++++|.++++-+..-..+-.||.-+
T Consensus       346 ----------------t----------agPfla~~AG~~fTVTVn~~nyv~FWGDSP  376 (400)
T 4gbf_A          346 ----------------H----------AGPYIQLAAGHNFTVTVNTLNQVMFWGDSP  376 (400)
T ss_dssp             ----------------G----------GCCEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred             ----------------C----------cchHHhHhccCCeEEEEeceeeEEEecCCC
Confidence                            1          125789999999999999999999999743

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=81.09  E-value=13  Score=30.55  Aligned_cols=70  Identities=13%  Similarity=0.078  Sum_probs=43.6

Q ss_pred             eEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecCC-----CeEEEEEcCCCEEEecCCCC
Q 026218           62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGW-----AHCVSVTEAGEVYTWGWREC  133 (241)
Q Consensus        62 h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~-----~hs~~lt~~G~vy~wG~n~~  133 (241)
                      +.+++|+.|++|..--. ..-..+.. ..-......+++..+++|+.+.+..     ...+++|++|.+.-.-..+|
T Consensus        55 ~ll~fT~~Gr~y~~~~~-~lp~~~r~-~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~  129 (327)
T 3uc1_A           55 LILFFTTQGRVYRAKAY-DLPEASRT-ARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDF  129 (327)
T ss_dssp             EEEEEETTSEEEEEEGG-GSCBCCSS-SCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGG
T ss_pred             EEEEEeCCCeEEEEEHH-HCcCCCcc-CCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHh
Confidence            78889999999998765 33322111 0001111235666688899887664     36778888887776544433

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=80.82  E-value=18  Score=28.24  Aligned_cols=114  Identities=10%  Similarity=0.026  Sum_probs=58.5

Q ss_pred             CceeEEEecCCcEEEcccCCCCCCCCCCcccceeeeec-CCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCCccccCC
Q 026218           10 ENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLC-GGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTS   88 (241)
Q Consensus        10 ~~~~l~~t~~G~vy~wG~n~g~~~~~~~~~~p~~~~~~-~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~GqlG~~~   88 (241)
                      ....+.+..+|++++++...+............++... ....+..++....+..++...+|.|..|-.. .....    
T Consensus        11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~-~~~~~----   85 (337)
T 1gxr_A           11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDIS-HPGNK----   85 (337)
T ss_dssp             ECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETT-STTCC----
T ss_pred             ceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECC-CCCce----
Confidence            34578999999999998765433221111111222222 2334555555333344455557888888665 21110    


Q ss_pred             CCCcCCceeeC-CCCCCCeEEEecCCC--eEEEEEcCCCEEEecCCC
Q 026218           89 GKHGETPEPFP-LPTEASVVKAAAGWA--HCVSVTEAGEVYTWGWRE  132 (241)
Q Consensus        89 ~~~~~~p~~v~-~~~~~~i~~ia~G~~--hs~~lt~~G~vy~wG~n~  132 (241)
                          .....+. ......|..++...+  ..++-..+|.|+.|-...
T Consensus        86 ----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~  128 (337)
T 1gxr_A           86 ----SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA  128 (337)
T ss_dssp             ----SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC
T ss_pred             ----eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence                1111111 122345666655433  445556788899985543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	241
d1a12a_	401	b.69.5.1 (A:) Regulator of chromosome condensation	1e-09
d1a12a_	401	b.69.5.1 (A:) Regulator of chromosome condensation	1e-05
d1a12a_	401	b.69.5.1 (A:) Regulator of chromosome condensation	8e-05
d1a12a_	401	b.69.5.1 (A:) Regulator of chromosome condensation	5e-04
d1jtdb_	273	b.69.5.2 (B:) beta-lactamase inhibitor protein-II,	6e-05

>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 1e-09
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 63  ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEA 122
              ++E G ++T G   D GQ  L      E  +P  +     VV+A AG  H V ++++
Sbjct: 8   RSHSTEPGLVLTLGQ-GDVGQLGLGENVM-ERKKPALVSIPEDVVQAEAGGMHTVCLSKS 65

Query: 123 GEVYTWGW 130
           G+VY++G 
Sbjct: 66  GQVYSFGC 73

>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 1e-05
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 8/89 (8%)

Query: 40  SPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFP 99
             IP  +    +   V  G      A ++ G++  WG      Q  L +G+  +   P  
Sbjct: 315 KSIPTLISRLPAVSSVACGA-SVGYAVTKDGRVFAWGM-GTNYQ--LGTGQDEDAWSPVE 370

Query: 100 LPTEA----SVVKAAAGWAHCVSVTEAGE 124
           +  +      V+  ++G  H V + +  E
Sbjct: 371 MMGKQLENRVVLSVSSGGQHTVLLVKDKE 399

>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 8e-05
 Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 2/62 (3%)

Query: 69  SGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTW 128
            GK  + G A+          +    P         +V   A G +   +VT+ G V+ W
Sbjct: 292 EGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYAVTKDGRVFAW 349

Query: 129 GW 130
           G 
Sbjct: 350 GM 351

>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 5e-04
 Identities = 38/227 (16%), Positives = 68/227 (29%), Gaps = 27/227 (11%)

Query: 22  VYMWGY-------LPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLIT 74
           V   G        L     E+       PA +   +       GG    +  S+SG++ +
Sbjct: 17  VLTLGQGDVGQLGLGENVMERKK-----PALVSIPEDVVQAEAGG-MHTVCLSKSGQVYS 70

Query: 75  WGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTW----GW 130
           +G  +DEG     +   G    P  +  +  VV+ +AG +H  ++T+ G V+ W      
Sbjct: 71  FGC-NDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDN 129

Query: 131 RECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESE 190
              +   +  +        Q D    + A   +             +   +        E
Sbjct: 130 NGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPE 189

Query: 191 NPASGDEFFTLSPCLV---------TLNPGVKITKVAAGGRHTLILS 228
             A+      L   LV              V+      G   T  +S
Sbjct: 190 LFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAIS 236

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

 Score = 40.9 bits (94), Expect = 6e-05
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 13/62 (20%)

Query: 69  SGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTW 128
           +  ++ WG  +D G++              P   ++ V   A G+ H +++   G+V  W
Sbjct: 3   ATSVVAWGGNNDWGEA------------TVPAEAQSGVDAIAGGYFHGLALKG-GKVLGW 49

Query: 129 GW 130
           G 
Sbjct: 50  GA 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	241
d1a12a_	401	Regulator of chromosome condensation RCC1 {Human (	99.97
d1a12a_	401	Regulator of chromosome condensation RCC1 {Human (	99.96
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	99.94
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	99.92
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.23
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	91.0
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	83.97
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	81.04

>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-31  Score=229.67  Aligned_cols=176  Identities=20%  Similarity=0.233  Sum_probs=136.7

Q ss_pred             ccCceeEEEecCCcEEEcccCC-CCCCCCCC-cccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCCccc
Q 026218            8 REENEKMEECKETVVYMWGYLP-GTSPEKSP-ILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSY   85 (241)
Q Consensus         8 ~~~~~~l~~t~~G~vy~wG~n~-g~~~~~~~-~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~GqlG   85 (241)
                      ...-|++++|++|+||+||.|. ||++.... ...+.|..+....+|++|+++. .|++||+++|+||+||.| .+||||
T Consensus         3 ~~~~h~~~~~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~i~~ia~G~-~h~~al~~~G~vy~wG~n-~~GQLG   80 (401)
T d1a12a_           3 VKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGG-MHTVCLSKSGQVYSFGCN-DEGALG   80 (401)
T ss_dssp             CCCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSSCEEEEEECS-SEEEEEETTSCEEEEECC-TTSTTC
T ss_pred             ceeeEEEEECCCCEEEEEeCCCCCCCCCCCCCceeccCEEeCCCCCeEEEEeCC-CEEEEEeCCCEEEEEeCC-CCCCCC
Confidence            3456889999999999999986 78876533 2344554455556899999954 599999999999999999 899999


Q ss_pred             cCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCCCCCC
Q 026218           86 LTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQA  165 (241)
Q Consensus        86 ~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~~~~~  165 (241)
                      ++.......|.+.......+|++|+||..|+++++++|+||+||.+..+|++. ..                        
T Consensus        81 ~g~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~-~~------------------------  135 (401)
T d1a12a_          81 RDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVI-GL------------------------  135 (401)
T ss_dssp             SCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEE-ES------------------------
T ss_pred             cccccccccccccccccccceeeecccccceeeccccccceeccccccccccc-cc------------------------
Confidence            98766666666666666788999999999999999999999999987654221 10                        


Q ss_pred             CCCCcccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEEEeecCC
Q 026218          166 PPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRFL  240 (241)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~~~  240 (241)
                                                   .. .....+..+......+|++|+||..|+++++++|++|+||.+.
T Consensus       136 -----------------------------~~-~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~~~~~G~n~  180 (401)
T d1a12a_         136 -----------------------------LE-PMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGE  180 (401)
T ss_dssp             -----------------------------SB-BTBCEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred             -----------------------------cC-CccccceeeeeccCCceeEEEecccceeeeecCCcccccccCC
Confidence                                         00 0122233334444678999999999999999999999999864

>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.5e-29  Score=216.73  Aligned_cols=166  Identities=20%  Similarity=0.265  Sum_probs=128.9

Q ss_pred             cccCceeEEEecCCcEEEcccCC-CCCCCCCC--cccceeeeecC--CCCceeEEecCCCeEEEEeCCCCEEEeecCCCC
Q 026218            7 KREENEKMEECKETVVYMWGYLP-GTSPEKSP--ILSPIPARLCG--GDSWKDVCGGGCGFALATSESGKLITWGSADDE   81 (241)
Q Consensus         7 ~~~~~~~l~~t~~G~vy~wG~n~-g~~~~~~~--~~~p~~~~~~~--~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~   81 (241)
                      .++..+.++++++|+||.||.|. ++++....  ...+.++....  ...++.++++ ..|+++|+++|+||+||.| .+
T Consensus       226 ~~g~~~~~~l~~~g~v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g-~~~~~~l~~~g~v~~wG~n-~~  303 (401)
T d1a12a_         226 FCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGG-QHHTVCMDSEGKAYSLGRA-EY  303 (401)
T ss_dssp             EEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEEC-SSEEEEEETTSCEEEEECC-GG
T ss_pred             EecCCeEEEEecCCeEeeecccceecccccccccceeccccccccccceeEEEEeee-ccceeeeccCCCEEEeccc-cc
Confidence            35667899999999999999886 45444332  23333333322  3456778874 4599999999999999999 99


Q ss_pred             CccccCC-CCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCC
Q 026218           82 GQSYLTS-GKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSAL  160 (241)
Q Consensus        82 GqlG~~~-~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~  160 (241)
                      ||||.+. ......|++++.+  .+|++|+||.+|++||+++|+||+||+|.+||||                       
T Consensus       304 gqlG~g~~~~~~~~P~~i~~~--~~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG-----------------------  358 (401)
T d1a12a_         304 GRLGLGEGAEEKSIPTLISRL--PAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLG-----------------------  358 (401)
T ss_dssp             GTTCSCTTCCCEEEEEECCSS--SSEEEEEECSSEEEEEETTSCEEEEECCTTSTTC-----------------------
T ss_pred             CccCCCcccccccCCEEcCCC--CCeEEEEeeCCEEEEEeCCCeEEEEecCCCCCCC-----------------------
Confidence            9999874 3455668877764  5699999999999999999999999999999888                       


Q ss_pred             CCCCCCCCCcccCceeeeeceeeeccCCCCCCCCCCccceecceEeec--CCCCcEEEEecCCCeeEEEecCCc
Q 026218          161 PTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTL--NPGVKITKVAAGGRHTLILSGYRK  232 (241)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~--~~~~~i~~Ia~G~~hs~alt~~G~  232 (241)
                                                       .++......|++|..  +.+.+|++|+||.+|+++|++||+
T Consensus       359 ---------------------------------~G~~~~~~~P~~v~~~~~~~~~v~~v~~G~~hs~~l~~d~~  399 (401)
T d1a12a_         359 ---------------------------------TGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKE  399 (401)
T ss_dssp             ---------------------------------SSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEECS
T ss_pred             ---------------------------------CCCCCCEecCEEeeccCCCCCEEEEEEEccceEEEEEECCc
Confidence                                             222334567777653  456789999999999999999985

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=99.94  E-value=7e-27  Score=191.07  Aligned_cols=67  Identities=19%  Similarity=0.304  Sum_probs=52.7

Q ss_pred             cccCceeEEEecCCcEEEcccCC-CCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCCccc
Q 026218            7 KREENEKMEECKETVVYMWGYLP-GTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSY   85 (241)
Q Consensus         7 ~~~~~~~l~~t~~G~vy~wG~n~-g~~~~~~~~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~GqlG   85 (241)
                      .++..|.++++ +|+||+||.|. +|++....          ...++++|+++ ..|+++|+ +|+||+||.+ .+||++
T Consensus        32 a~G~~h~~al~-dG~v~~wG~N~~GQlG~~~~----------~~~~v~~v~~G-~~~~~al~-dg~v~~wG~~-~~gq~~   97 (273)
T d1jtdb_          32 AGGYFHGLALK-GGKVLGWGANLNGQLTMPAA----------TQSGVDAIAAG-NYHSLALK-DGEVIAWGGN-EDGQTT   97 (273)
T ss_dssp             EECSSEEEEEE-TTEEEEEECCTTSTTSCCGG----------GGSCCCEEEEC-SSEEEEEE-TTEEEEEECC-TTSTTC
T ss_pred             EccCCEEEEEE-CCEEEEEeCCCCCceeeeec----------ccccceEEecC-CCceeeee-eeeeeccCCC-cceeec
Confidence            45778899998 89999999986 67764321          12357789985 45999997 7999999999 899987


Q ss_pred             cC
Q 026218           86 LT   87 (241)
Q Consensus        86 ~~   87 (241)
                      ..
T Consensus        98 ~~   99 (273)
T d1jtdb_          98 VP   99 (273)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=99.92  E-value=1.3e-24  Score=177.51  Aligned_cols=95  Identities=29%  Similarity=0.449  Sum_probs=73.9

Q ss_pred             CcEEEcccCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeC
Q 026218           20 TVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFP   99 (241)
Q Consensus        20 G~vy~wG~n~g~~~~~~~~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~   99 (241)
                      -.||+||.++...      ..|.|++..  .+|++|+++ ..|+++|+ +|+||+||.| .+||||.+..          
T Consensus         4 ~sv~~WG~~~~~~------~~~~~~~~~--~~i~~va~G-~~h~~al~-dG~v~~wG~N-~~GQlG~~~~----------   62 (273)
T d1jtdb_           4 TSVVAWGGNNDWG------EATVPAEAQ--SGVDAIAGG-YFHGLALK-GGKVLGWGAN-LNGQLTMPAA----------   62 (273)
T ss_dssp             SEEEEESSCCSSS------TTCCCGGGS--SSEEEEEEC-SSEEEEEE-TTEEEEEECC-TTSTTSCCGG----------
T ss_pred             CEEEEECCCCCCC------ceeccccCC--CCcEEEEcc-CCEEEEEE-CCEEEEEeCC-CCCceeeeec----------
Confidence            4699999775322      122333333  368899995 45999998 8999999999 9999986432          


Q ss_pred             CCCCCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCC
Q 026218          100 LPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAK  138 (241)
Q Consensus       100 ~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~  138 (241)
                        ...+|++|+||.+|+++|+ +|++|+||.+.+||++.
T Consensus        63 --~~~~v~~v~~G~~~~~al~-dg~v~~wG~~~~gq~~~   98 (273)
T d1jtdb_          63 --TQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV   98 (273)
T ss_dssp             --GGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC
T ss_pred             --ccccceEEecCCCceeeee-eeeeeccCCCcceeecc
Confidence              1345899999999999997 89999999999998874

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.23  E-value=0.11  Score=41.26  Aligned_cols=21  Identities=19%  Similarity=0.147  Sum_probs=16.7

Q ss_pred             CCeEEEEEcCCCEEEecCCCC
Q 026218          113 WAHCVSVTEAGEVYTWGWREC  133 (241)
Q Consensus       113 ~~hs~~lt~~G~vy~wG~n~~  133 (241)
                      ..|+.++..+|+||+.|=...
T Consensus       290 ~~~~~~~~~dg~i~v~GG~~~  310 (387)
T d1k3ia3         290 TFHTSVVLPDGSTFITGGQRR  310 (387)
T ss_dssp             BSCEEEECTTSCEEEECCBSB
T ss_pred             ccceeeeccCCeEEEECCccc
Confidence            468888888999999985543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=91.00  E-value=1.5  Score=34.18  Aligned_cols=71  Identities=20%  Similarity=0.210  Sum_probs=38.7

Q ss_pred             CeEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEe----cCCCeE-EEEEcCCCEEEecCCCCC
Q 026218           61 GFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAA----AGWAHC-VSVTEAGEVYTWGWRECV  134 (241)
Q Consensus        61 ~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia----~G~~hs-~~lt~~G~vy~wG~n~~g  134 (241)
                      .|+.++..+|+||..|-. ..+...... .....+.... +...+...++    .-.+|+ .+|..||+||++|-+.++
T Consensus       291 ~~~~~~~~dg~i~v~GG~-~~~~~~~~~-~~~~~ve~Yd-p~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~~~~  366 (387)
T d1k3ia3         291 FHTSVVLPDGSTFITGGQ-RRGIPFEDS-TPVFTPEIYV-PEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCG  366 (387)
T ss_dssp             SCEEEECTTSCEEEECCB-SBCCTTCCC-SBCCCCEEEE-GGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCT
T ss_pred             cceeeeccCCeEEEECCc-ccCccCCCC-cEeceEEEEE-CCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCCCcC
Confidence            388888889999999987 555433221 1111111110 0011111111    123566 557889999999976553

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.97  E-value=6.2  Score=28.80  Aligned_cols=96  Identities=17%  Similarity=0.134  Sum_probs=47.0

Q ss_pred             eeEEEecCCcEEEcccCCCCCCCCCCcccceeeeecCCCCceeEEec-C--CCeEEEEeCCCCEEEeecCCCCCccccCC
Q 026218           12 EKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGG-G--CGFALATSESGKLITWGSADDEGQSYLTS   88 (241)
Q Consensus        12 ~~l~~t~~G~vy~wG~n~g~~~~~~~~~~p~~~~~~~~~~i~~v~~~-~--~~h~~~lt~~G~vy~wG~n~~~GqlG~~~   88 (241)
                      +.++++.+|.+|........          +.+.+........+... +  .-+.++++.+|+||.....  .+.+-.-.
T Consensus        17 ~~vavd~dG~i~v~~~~~~~----------~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~--~~~i~~~~   84 (260)
T d1rwia_          17 SGVAVDSAGNVYVTSEGMYG----------RVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFN--NRVVTLAA   84 (260)
T ss_dssp             EEEEECTTCCEEEEECSSSC----------EEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETT--TEEEEECT
T ss_pred             CEEEEcCCCCEEEEEcCCCC----------EEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeee--eceeeeee
Confidence            37899999999987543211          11111111111111111 1  1178999999999977654  22221111


Q ss_pred             CCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEec
Q 026218           89 GKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG  129 (241)
Q Consensus        89 ~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG  129 (241)
                      ..  ......... .       ...-+.++++.+|++|+.-
T Consensus        85 ~~--~~~~~~~~~-~-------~~~p~~iavd~~g~i~v~d  115 (260)
T d1rwia_          85 GS--NNQTVLPFD-G-------LNYPEGLAVDTQGAVYVAD  115 (260)
T ss_dssp             TC--SCCEECCCC-S-------CCSEEEEEECTTCCEEEEE
T ss_pred             ec--cceeeeeee-e-------eeecccccccccceeEeec
Confidence            00  001111110 0       1223678889999999864

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.04  E-value=3.8  Score=30.06  Aligned_cols=60  Identities=15%  Similarity=0.095  Sum_probs=34.8

Q ss_pred             eEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCC
Q 026218           62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWR  131 (241)
Q Consensus        62 h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n  131 (241)
                      |.++++.+|++|..... ..+++-.-....  .-+......       ....-+.++++.+|+||+....
T Consensus        17 ~~vavd~dG~i~v~~~~-~~~~i~~~~~~~--~~~~~~~~~-------~~~~p~gvav~~~g~i~v~d~~   76 (260)
T d1rwia_          17 SGVAVDSAGNVYVTSEG-MYGRVVKLATGS--TGTTVLPFN-------GLYQPQGLAVDGAGTVYVTDFN   76 (260)
T ss_dssp             EEEEECTTCCEEEEECS-SSCEEEEEC------CEEECCCC-------SCCSCCCEEECTTCCEEEEETT
T ss_pred             CEEEEcCCCCEEEEEcC-CCCEEEEEcCCC--ceEEEeccC-------CccCceEEEEcCCCCEEEeeee
Confidence            89999999999998776 566642211100  000010000       0123477899999999987543