Citrus Sinensis ID: 026231

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
MSLRFRAKEKEAKANPDDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPNRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVLQ
ccccccccccccccccccccccccccccEEEEcccccEEEEEcccccHHHHHHHHHHHHHHccccccEEEEcccEEEEccEEEEEEccccccEEcccccccccccccccHHHHHHHHHHHHcccccccEEEEEEEccccccccccccccccccccccEEEEEccccEEEEEEEccccccccccHHHHHccccccccEEEEcccccEEEEcccccccEEEcccccccccccEEEEEEEcccc
cccHHHccccccccccccccccccccccEEEEcccccEEEEccccccHHHHHHHHHHHHHHcccccccEEEcccEEccccEEEEEcccccccEEEcccccccccccccHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccHHcccccEEEEEEcccccEEEEEcccccEEccEEEEEEEEEEccccEEEEEcccccEEEEccccHHcHHHccccccccccccEEEEEHHHcc
MSLRFRAKekeakanpddddeknqkKQRMVVDlgngseviyfpriikmEDSWKFFDYlnnripwnrptirvfgrsclqprdtcyvaseGVTQLIYsgyrphpyswddfpplkdILDIVLKvlpgsrfnSLLLNRYkggndyvgwhaddeklygstpeiasvsfgcerdfllkikpnrrtddepvskrlkkkgnldqhsftlkhgsmlvmrgytqrdwihsvprrakaestrINLTFRHVLQ
mslrfrakekeakanpddddeknqkkqrmvvdlgngseviyfprIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLlkikpnrrtddepvskrlkkkgnldqhsftlkhgsmlvMRGYTQRDwihsvprrakaestrinltfrhvlq
MSLRFRAKEKEAKANPDDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPNRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVLQ
*****************************VVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKI*************************FTLKHGSMLVMRGYTQRDWIHSVP**********NL*******
*********************************GNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIK***********************SFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVLQ
*************************KQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPNRR*********LKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVLQ
**************************QRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPNRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVLQ
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSLRFRAKEKEAKANPDDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPNRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVLQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query241 2.2.26 [Sep-21-2011]
Q58DM4278 Alpha-ketoglutarate-depen yes no 0.937 0.812 0.317 4e-20
Q32L00286 Alpha-ketoglutarate-depen no no 0.775 0.653 0.339 6e-20
Q6P6J4239 Alpha-ketoglutarate-depen yes no 0.659 0.665 0.372 7e-20
Q6NS38261 Alpha-ketoglutarate-depen yes no 0.659 0.609 0.383 2e-19
Q96Q83286 Alpha-ketoglutarate-depen no no 0.767 0.646 0.326 2e-19
Q5XIC8295 Alpha-ketoglutarate-depen no no 0.767 0.627 0.326 8e-19
Q8K1E6286 Alpha-ketoglutarate-depen no no 0.775 0.653 0.325 2e-18
Q91QZ3 1962 RNA replication protein O N/A no 0.448 0.055 0.309 0.0003
>sp|Q58DM4|ALKB2_BOVIN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Bos taurus GN=ALKBH2 PE=2 SV=1 Back     alignment and function desciption
 Score = 98.6 bits (244), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 121/258 (46%), Gaps = 32/258 (12%)

Query: 2   SLRFRAKEKEAKANPDD--DDEKNQKKQRMVVDLGNG--SEVIYFPRI------------ 45
           SL+ R ++++    P    ++E N KK       GNG  S  + + RI            
Sbjct: 12  SLKRRMEQEQTGGGPAGLAEEEGNSKKNPRRAAPGNGVDSAGLTWGRIRAEGLNCDYTIL 71

Query: 46  IKMEDSWKFFDYLNNRIPW---NRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHP 102
               ++ + F  L   + +       ++VFG+    PR        G+T   +SG    P
Sbjct: 72  FGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDTGLT-YTFSGLTLSP 130

Query: 103 YSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVS 162
             W   P L+ + D V  ++ G  FN +L+NRYK G D++G H DDE+       IASVS
Sbjct: 131 KPW--IPVLERVRDRV-SLVTGQTFNFVLINRYKDGQDHIGEHRDDERELALGSPIASVS 187

Query: 163 FGCERDFLLKIKPNRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVP 222
           FG  RDF+ + K +R     P S+R      L+     L HGS+L+M   T   W HS+P
Sbjct: 188 FGACRDFVFRHKDSR--GKHP-SRR------LEVVRLQLAHGSLLMMNHPTNTHWYHSLP 238

Query: 223 RRAKAESTRINLTFRHVL 240
            R K  + R+NLTFR +L
Sbjct: 239 VRKKVLAPRVNLTFRKIL 256
Dioxygenase that repairs alkylated DNA and RNA containing 1-methyladenine and 3-methylcytosine by oxidative demethylation. Can also repair alkylated DNA containing 1-ethenoadenine (in vitro). Has strong preference for double-stranded DNA. Has low efficiency with single-stranded substrates. Requires molecular oxygen, alpha-ketoglutarate and iron.
Bos taurus (taxid: 9913)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|Q32L00|ALKB3_BOVIN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Bos taurus GN=ALKBH3 PE=2 SV=1 Back     alignment and function description
>sp|Q6P6J4|ALKB2_MOUSE Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Mus musculus GN=Alkbh2 PE=1 SV=1 Back     alignment and function description
>sp|Q6NS38|ALKB2_HUMAN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Homo sapiens GN=ALKBH2 PE=1 SV=1 Back     alignment and function description
>sp|Q96Q83|ALKB3_HUMAN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Homo sapiens GN=ALKBH3 PE=1 SV=1 Back     alignment and function description
>sp|Q5XIC8|ALKB3_RAT Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Rattus norvegicus GN=Alkbh3 PE=2 SV=1 Back     alignment and function description
>sp|Q8K1E6|ALKB3_MOUSE Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Mus musculus GN=Alkbh3 PE=1 SV=1 Back     alignment and function description
>sp|Q91QZ3|RDRP_CLBVS RNA replication protein OS=Citrus leaf blotch virus (isolate Nagami kumquat/France/SRA-153/1984) GN=ORF1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query241
147777784244 hypothetical protein VITISV_030147 [Viti 0.991 0.979 0.677 7e-97
224089559240 predicted protein [Populus trichocarpa] 0.933 0.937 0.718 5e-96
357448069248 Alpha-ketoglutarate-dependent dioxygenas 0.929 0.903 0.689 8e-92
87162794256 2OG-Fe(II) oxygenase [Medicago truncatul 0.929 0.875 0.666 4e-91
18399917314 oxidoreductase, 2OG-Fe(II) oxygenase-lik 0.883 0.678 0.716 1e-90
297821443307 oxidoreductase [Arabidopsis lyrata subsp 0.883 0.693 0.707 2e-89
356532818236 PREDICTED: alpha-ketoglutarate-dependent 0.921 0.940 0.690 3e-89
449434054244 PREDICTED: alpha-ketoglutarate-dependent 0.975 0.963 0.655 7e-89
242095540265 hypothetical protein SORBIDRAFT_10g01072 0.875 0.796 0.669 2e-80
218197985254 hypothetical protein OsI_22576 [Oryza sa 0.991 0.940 0.598 5e-80
>gi|147777784|emb|CAN75733.1| hypothetical protein VITISV_030147 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  359 bits (921), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 166/245 (67%), Positives = 202/245 (82%), Gaps = 6/245 (2%)

Query: 1   MSLRFRAKEKEAKANPDDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNN 60
           M+ +F+A E ++     + +  N+  +R  +DLGNGS++IY PR +  E+SWK+FDYLN 
Sbjct: 1   MNFKFKA-ESKSTNPNPNPNPSNEGGKRQSIDLGNGSDLIYIPRFLAFEESWKWFDYLNK 59

Query: 61  RIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLK 120
            IPW RPTIRVFGRSC+QPRDTCYVAS G+ +L YSGY+PH Y+WDD+PPLKDIL  V K
Sbjct: 60  EIPWTRPTIRVFGRSCVQPRDTCYVASVGLPELSYSGYQPHAYTWDDYPPLKDILVXVHK 119

Query: 121 VLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPNR--- 177
            LPGS FNSLLLNRYKGGNDYVGWH+DDEKLYGSTPEIAS+SFGCER+F LK KP++   
Sbjct: 120 ALPGSSFNSLLLNRYKGGNDYVGWHSDDEKLYGSTPEIASISFGCEREFFLKKKPSKVSQ 179

Query: 178 --RTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLT 235
             R++ EPV+KR KK  ++D HSFTLKHGSMLVMRGYTQRDW+HSVP+RAKA++TRINLT
Sbjct: 180 DSRSNGEPVNKRAKKSSSVDHHSFTLKHGSMLVMRGYTQRDWVHSVPKRAKADATRINLT 239

Query: 236 FRHVL 240
           FRHV+
Sbjct: 240 FRHVI 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224089559|ref|XP_002308756.1| predicted protein [Populus trichocarpa] gi|222854732|gb|EEE92279.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357448069|ref|XP_003594310.1| Alpha-ketoglutarate-dependent dioxygenase alkB-like protein [Medicago truncatula] gi|355483358|gb|AES64561.1| Alpha-ketoglutarate-dependent dioxygenase alkB-like protein [Medicago truncatula] gi|388502228|gb|AFK39180.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|87162794|gb|ABD28589.1| 2OG-Fe(II) oxygenase [Medicago truncatula] Back     alignment and taxonomy information
>gi|18399917|ref|NP_565530.1| oxidoreductase, 2OG-Fe(II) oxygenase-like protein [Arabidopsis thaliana] gi|20198150|gb|AAD23616.2| expressed protein [Arabidopsis thaliana] gi|330252192|gb|AEC07286.1| oxidoreductase, 2OG-Fe(II) oxygenase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297821443|ref|XP_002878604.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297324443|gb|EFH54863.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356532818|ref|XP_003534967.1| PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 3-like [Glycine max] Back     alignment and taxonomy information
>gi|449434054|ref|XP_004134811.1| PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 3-like [Cucumis sativus] gi|449520163|ref|XP_004167103.1| PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|242095540|ref|XP_002438260.1| hypothetical protein SORBIDRAFT_10g010720 [Sorghum bicolor] gi|241916483|gb|EER89627.1| hypothetical protein SORBIDRAFT_10g010720 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|218197985|gb|EEC80412.1| hypothetical protein OsI_22576 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query241
TAIR|locus:2060430314 ALKBH2 "homolog of E. coli alk 0.883 0.678 0.716 3e-85
UNIPROTKB|E2R042259 ALKBH2 "Uncharacterized protei 0.659 0.613 0.383 1.9e-24
UNIPROTKB|Q9KKY9202 VC_A0961 "Putative uncharacter 0.738 0.881 0.35 1.8e-23
TIGR_CMR|VC_A0961202 VC_A0961 "hypothetical protein 0.738 0.881 0.35 1.8e-23
ASPGD|ASPL0000069236335 AN7782 [Emericella nidulans (t 0.427 0.307 0.439 2.9e-22
UNIPROTKB|E1C3L3286 ALKBH3 "Uncharacterized protei 0.763 0.643 0.356 3.4e-22
UNIPROTKB|F1N437278 ALKBH2 "Alpha-ketoglutarate-de 0.659 0.571 0.383 9e-22
UNIPROTKB|Q58DM4278 ALKBH2 "Alpha-ketoglutarate-de 0.659 0.571 0.383 1.1e-21
UNIPROTKB|I3LAK2259 ALKBH2 "Uncharacterized protei 0.659 0.613 0.389 1.1e-21
UNIPROTKB|Q8EHW4217 SO_1098 "2OG-Fe(II) oxygenase 0.460 0.511 0.367 3.8e-21
TAIR|locus:2060430 ALKBH2 "homolog of E. coli alkB" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 853 (305.3 bits), Expect = 3.0e-85, P = 3.0e-85
 Identities = 157/219 (71%), Positives = 176/219 (80%)

Query:    28 RMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVAS 87
             R  +DLG+GS++IY  R +  + SW FFDYL+  IPW RPTIRVFGRSCLQPRDTCYVAS
Sbjct:    96 RKTIDLGHGSDLIYIQRFLPFQQSWTFFDYLDKHIPWTRPTIRVFGRSCLQPRDTCYVAS 155

Query:    88 EGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHAD 147
              G+T L+YSGYRP  YSWDDFPPLK+ILD + KVLPGSRFNSLLLNRYKG +DYV WHAD
Sbjct:   156 SGLTALVYSGYRPTSYSWDDFPPLKEILDAIYKVLPGSRFNSLLLNRYKGASDYVAWHAD 215

Query:   148 DEKLYGSTPEIASVSFGCERDFLLKIKPNRRT------DDEPVSKRLKKKGNLDQHSFTL 201
             DEK+YG TPEIASVSFGCERDF+LK K +  +      D  P  KRLK+    DQ S TL
Sbjct:   216 DEKIYGPTPEIASVSFGCERDFVLKKKKDEESSQGKTGDSGPAKKRLKRSSREDQQSLTL 275

Query:   202 KHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVL 240
             KHGS+LVMRGYTQRDWIHSVP+RAKAE TRINLTFR VL
Sbjct:   276 KHGSLLVMRGYTQRDWIHSVPKRAKAEGTRINLTFRLVL 314
GO:0005634 "nucleus" evidence=ISM
GO:0008152 "metabolic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=ISS
GO:0006281 "DNA repair" evidence=IDA
GO:0035514 "DNA demethylase activity" evidence=IDA
UNIPROTKB|E2R042 ALKBH2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KKY9 VC_A0961 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_A0961 VC_A0961 "hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
ASPGD|ASPL0000069236 AN7782 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|E1C3L3 ALKBH3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1N437 ALKBH2 "Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q58DM4 ALKBH2 "Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|I3LAK2 ALKBH2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q8EHW4 SO_1098 "2OG-Fe(II) oxygenase family protein" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q58DM4ALKB2_BOVIN1, ., 1, 4, ., 1, 1, ., -0.31780.93770.8129yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00010954001
SubName- Full=Chromosome undetermined scaffold_296, whole genome shotgun sequence; (233 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00034899001
SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (93 aa)
•       0.472
GSVIVG00001208001
SubName- Full=Chromosome chr2 scaffold_113, whole genome shotgun sequence; (347 aa)
      • 0.430
GSVIVG00010287001
SubName- Full=Chromosome chr5 scaffold_253, whole genome shotgun sequence; (536 aa)
•       0.426

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query241
pfam13532190 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase su 2e-31
COG3145194 COG3145, AlkB, Alkylated DNA repair protein [DNA r 4e-18
>gnl|CDD|222204 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information 
 Score =  113 bits (286), Expect = 2e-31
 Identities = 52/210 (24%), Positives = 75/210 (35%), Gaps = 32/210 (15%)

Query: 39  VIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGY 98
           ++  P  +  E+       L    PW +P     G+        C           Y  Y
Sbjct: 2   LVLLPGFLSAEEQAALLRELLAEAPWRQPMTPG-GKPMSVRMTNCGPLGWVTDGPGYR-Y 59

Query: 99  RPHPYS---WDDFPP-LKDILDIVLK--VLPGSRFNSLLLNRYKGGNDYVGWHADDEKLY 152
              P +   W  FP  L  + + +      PG   N+ L+N Y+ G   +G H D ++  
Sbjct: 60  SGTPVTGEPWPPFPAVLLQLAERLAAAAGPPGFEPNACLVNFYRPG-ARMGLHQDKDE-L 117

Query: 153 GSTPEIASVSFGCERDFLLKIKPNRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGY 212
                I SVS G    F    K    T D+P              +  L+ G +LVM G 
Sbjct: 118 DFGAPIVSVSLGDPALFRFGGK----TRDDP------------TIALPLESGDVLVMGGP 161

Query: 213 TQRDWIHSVPRRAKA-----ESTRINLTFR 237
           ++  + H VPR            RINLTFR
Sbjct: 162 SRLAY-HGVPRIKPGTHPLLGGGRINLTFR 190

Length = 190
>gnl|CDD|225687 COG3145, AlkB, Alkylated DNA repair protein [DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 241
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 100.0
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 100.0
TIGR00568169 alkb DNA alkylation damage repair protein AlkB. Pr 99.98
COG3145194 AlkB Alkylated DNA repair protein [DNA replication 99.96
KOG3200224 consensus Uncharacterized conserved protein [Funct 99.88
KOG3959306 consensus 2-Oxoglutarate- and iron-dependent dioxy 99.64
PF12933253 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 99.62
KOG4176323 consensus Uncharacterized conserved protein [Funct 99.53
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 97.88
KOG2731378 consensus DNA alkylation damage repair protein [RN 97.82
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 97.69
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 97.27
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.34
PLN00052310 prolyl 4-hydroxylase; Provisional 93.66
TIGR01762288 chlorin-enz chlorinating enzymes. This model repre 93.04
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 91.82
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 90.77
PF08007 319 Cupin_4: Cupin superfamily protein; InterPro: IPR0 90.67
PF09859173 Oxygenase-NA: Oxygenase, catalysing oxidative meth 88.88
COG3128229 PiuC Uncharacterized iron-regulated protein [Funct 85.87
TIGR02466201 conserved hypothetical protein. This family consis 85.17
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.8e-37  Score=260.59  Aligned_cols=182  Identities=21%  Similarity=0.320  Sum_probs=146.6

Q ss_pred             EeCCCCceEEEeCCCCCHHHHHHHHHHHHh---cCCCCCceeeecCeEEeeccee-----eeeCCCCccceeecCCC-CC
Q 026231           31 VDLGNGSEVIYFPRIIKMEDSWKFFDYLNN---RIPWNRPTIRVFGRSCLQPRDT-----CYVASEGVTQLIYSGYR-PH  101 (241)
Q Consensus        31 ~~l~~~~~~~~~~~fl~~~ea~~L~~~l~~---~~~w~~~~~~~~G~~~~~pR~~-----~~~~~~g~~~y~ysg~~-~~  101 (241)
                      ..+.+|  +.++++|. .+++++|++.|++   ..+|++  +.++|+...++|++     .|+++..  .|.|++.. ..
T Consensus        14 ~~~~~g--~~~~~~~~-~~~~~~l~~~~~~~~~~~p~~~--~~~~gg~~msv~mt~~G~~~W~~d~~--~YrYs~~~~~~   86 (213)
T PRK15401         14 EPLAPG--AVLLRGFA-LAAAEALLAAIEAVAAQAPFRH--MVTPGGYTMSVAMTNCGALGWVTDRR--GYRYSPIDPLT   86 (213)
T ss_pred             eecCCC--cEEeCCCC-HHHHHHHHHHHHHHHhcCCccc--eecCCCCcceeEEeccccceEecCCC--CcccCCcCCCC
Confidence            446555  99999995 8899999999987   899988  56788888899999     8999863  49999875 56


Q ss_pred             CCCCCCCch-HHHHHHHHHhh--cCCCCCceeeeeeecCCCCCcccccCCC-CccCCCCeEEEEEcCCceeeEEeeCCCC
Q 026231          102 PYSWDDFPP-LKDILDIVLKV--LPGSRFNSLLLNRYKGGNDYVGWHADDE-KLYGSTPEIASVSFGCERDFLLKIKPNR  177 (241)
Q Consensus       102 ~~~w~~~P~-L~~~~~~~~e~--~~g~~~n~~liN~Y~~G~d~i~~H~D~~-~~~g~~~~IasvSLG~~r~f~fr~~~~~  177 (241)
                      ..||+++|. |.++.+++...  ..+..||+||||+|++|+ +|+||+|+. ..  .+++|||||||++|+|.|++....
T Consensus        87 ~~pwp~~P~~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~~G~-~mg~H~D~~E~~--~~~pI~SvSLG~~~~F~~~~~~~~  163 (213)
T PRK15401         87 GKPWPAMPASFLALAQRAAAAAGFPGFQPDACLINRYAPGA-KLSLHQDKDERD--FRAPIVSVSLGLPAVFQFGGLKRS  163 (213)
T ss_pred             CCCCCCchHHHHHHHHHHHHHcCCCCCCCCEEEEEeccCcC-ccccccCCCccc--CCCCEEEEeCCCCeEEEecccCCC
Confidence            789998885 66666655322  123489999999999998 999999964 33  356899999999999999875432


Q ss_pred             CCCCchhhhhhhccCCccceEEEcCCCcEEEEccCccccccccccccCCCC-----CceEEEecccc
Q 026231          178 RTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAE-----STRINLTFRHV  239 (241)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~l~L~~gsllvM~g~~q~~w~H~Ip~~~~~~-----~~RISlTFR~~  239 (241)
                                      ....+|.|++|||+||.|++|. |.|+|++.+...     ..|||||||++
T Consensus       164 ----------------~~~~~l~L~~Gdllvm~G~sr~-~~HgVp~~~~~~~p~~g~~RINLTFR~~  213 (213)
T PRK15401        164 ----------------DPLQRILLEHGDVVVWGGPSRL-RYHGILPLKAGEHPLTGECRINLTFRKA  213 (213)
T ss_pred             ----------------CceEEEEeCCCCEEEECchHhh-eeccCCcCCCCcCCCCCCCeEEEEeEcC
Confidence                            2367899999999999999987 559999976433     37999999975

>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>TIGR00568 alkb DNA alkylation damage repair protein AlkB Back     alignment and domain information
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG3200 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only] Back     alignment and domain information
>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family Back     alignment and domain information
>KOG4176 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification] Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>PLN00052 prolyl 4-hydroxylase; Provisional Back     alignment and domain information
>TIGR01762 chlorin-enz chlorinating enzymes Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors Back     alignment and domain information
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query241
3rzm_A206 Duplex Interrogation By A Direct Dna Repair Protein 3e-20
3btz_A202 Crystal Structure Of Human Abh2 Cross-Linked To Dsd 3e-20
3rzl_A208 Duplex Interrogation By A Direct Dna Repair Protein 3e-20
3rzh_A209 Duplex Interrogation By A Direct Dna Repair Protein 3e-20
3bty_A203 Crystal Structure Of Human Abh2 Bound To Dsdna Cont 3e-20
3s57_A204 Abh2 Cross-Linked With Undamaged Dsdna-1 Containing 3e-20
3bu0_A203 Crystal Structure Of Human Abh2 Cross-Linked To Dsd 3e-20
3h8o_A209 Structure Determination Of Dna Methylation Lesions 3e-20
3btx_A204 X-Ray Structure Of Human Abh2 Bound To Dsdna Throug 3e-20
3rzg_A209 Duplex Interrogation By A Direct Dna Repair Protein 4e-20
2iuw_A238 Crystal Structure Of Human Abh3 In Complex With Iro 1e-19
>pdb|3RZM|A Chain A, Duplex Interrogation By A Direct Dna Repair Protein In The Search Of Damage Length = 206 Back     alignment and structure 
Iteration: 1

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 89/172 (51%), Gaps = 13/172 (7%)
Query: 69  IRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFN 128
           ++VFG+    PR        G+T   +SG    P  W   P L+ I D V  V  G  FN
Sbjct: 45  VQVFGKWHSVPRKQATYGDAGLT-YTFSGLTLSPKPW--IPVLERIRDHVSGVT-GQTFN 100
Query: 129 SLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPNRRTDDEPVSKRL 188
            +L+NRYK G+D++  H DDE+       IASVSFG  RDF+ + K +R    +  S+R+
Sbjct: 101 FVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSR---GKSPSRRV 157
Query: 189 KKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVL 240
                       L HGS+L+M   T   W HS+P R K  + R+NLTFR +L
Sbjct: 158 AVV------RLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKIL 203
>pdb|3BTZ|A Chain A, Crystal Structure Of Human Abh2 Cross-Linked To Dsdna Length = 202 Back     alignment and structure
>pdb|3RZL|A Chain A, Duplex Interrogation By A Direct Dna Repair Protein In The Search Of Damage Length = 208 Back     alignment and structure
>pdb|3RZH|A Chain A, Duplex Interrogation By A Direct Dna Repair Protein In The Search Of Damage Length = 209 Back     alignment and structure
>pdb|3BTY|A Chain A, Crystal Structure Of Human Abh2 Bound To Dsdna Containing 1mea Through Cross-Linking Away From Active Site Length = 203 Back     alignment and structure
>pdb|3S57|A Chain A, Abh2 Cross-Linked With Undamaged Dsdna-1 Containing Cofactors Length = 204 Back     alignment and structure
>pdb|3BU0|A Chain A, Crystal Structure Of Human Abh2 Cross-Linked To Dsdna With Cofactors Length = 203 Back     alignment and structure
>pdb|3H8O|A Chain A, Structure Determination Of Dna Methylation Lesions N1-mea And N3-mec In Duplex Dna Using A Cross-linked Host-guest System Length = 209 Back     alignment and structure
>pdb|3BTX|A Chain A, X-Ray Structure Of Human Abh2 Bound To Dsdna Through Active Site Cross-Linking Length = 204 Back     alignment and structure
>pdb|3RZG|A Chain A, Duplex Interrogation By A Direct Dna Repair Protein In The Search Of Damage Length = 209 Back     alignment and structure
>pdb|2IUW|A Chain A, Crystal Structure Of Human Abh3 In Complex With Iron Ion And 2-Oxoglutarate Length = 238 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query241
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 6e-46
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 1e-45
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 4e-25
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 2e-22
3lfm_A 495 Protein FTO; FAT MASS and obesity associated (FTO) 2e-06
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Length = 238 Back     alignment and structure
 Score =  152 bits (384), Expect = 6e-46
 Identities = 62/239 (25%), Positives = 96/239 (40%), Gaps = 13/239 (5%)

Query: 2   SLRFRAKEKEAKANPDDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNR 61
                                 +    + +     S V  +P  + ++++    + L   
Sbjct: 5   HHHHHHSSGLVPRGSHMRVIDREGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQD 64

Query: 62  IPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKV 121
           +PW + T      +  QPR T +          Y+  R        + P+   L   ++ 
Sbjct: 65  VPWKQRTGIREDITYQQPRLTAWYGELP-----YTYSRITMEPNPHWHPVLRTLKNRIEE 119

Query: 122 LPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPNRRTDD 181
             G  FNSLL N Y+   D V WH+DDE   G  P IAS+SFG  R F ++ KP    + 
Sbjct: 120 NTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENG 179

Query: 182 EPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVL 240
           +            ++    L HG++L+M G TQ DW H VP+   +   R+NLTFR V 
Sbjct: 180 DYTYV--------ERVKIPLDHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVY 230
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Length = 204 Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Length = 345 Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Length = 211 Back     alignment and structure
>3lfm_A Protein FTO; FAT MASS and obesity associated (FTO) protein, Fe2+/2-oxoGlu (2-OG)-dependent oxidative DNA/RNA demethylases, oxidoreduc; HET: 3DT OGA; 2.50A {Homo sapiens} Length = 495 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query241
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 100.0
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 100.0
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 100.0
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 100.0
3lfm_A 495 Protein FTO; FAT MASS and obesity associated (FTO) 99.87
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 97.19
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 97.14
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 96.69
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 95.93
3kt7_A 633 PKHD-type hydroxylase TPA1; double-stranded beta h 93.59
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 92.18
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 83.7
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
Probab=100.00  E-value=6.8e-48  Score=323.44  Aligned_cols=189  Identities=34%  Similarity=0.566  Sum_probs=166.2

Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCC---CCceeeecCeEEeecceeeeeCCCCccceeecCCCCCCCCCCCCchHHHHH
Q 026231           39 VIYFPRIIKMEDSWKFFDYLNNRIPW---NRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDIL  115 (241)
Q Consensus        39 ~~~~~~fl~~~ea~~L~~~l~~~~~w---~~~~~~~~G~~~~~pR~~~~~~~~g~~~y~ysg~~~~~~~w~~~P~L~~~~  115 (241)
                      ..|+++||+++||++||++|+++++|   ++..+++|||.+.+||+++||++.+.. |.|+|..+.+.||+  |+|..++
T Consensus        12 ~~~~~~~l~~~~a~~l~~~l~~~~~w~~~~~~~~~~~gk~~~~pR~~~wyg~~~~~-Y~Ysg~~~~~~pwp--~~L~~l~   88 (204)
T 3s57_A           12 DSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLT-YTFSGLTLSPKPWI--PVLERIR   88 (204)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHHCCCCCGGGGEEEETTEEEECSSEEEEEECTTCC-EEETTEEECCEECC--HHHHHHH
T ss_pred             eEEecCcCCHHHHHHHHHHHHHhCCCCCcccceEEECCeEeccCcEEEEECCCCCC-cccCCCcccCCCCC--HHHHHHH
Confidence            56789999999999999999999999   777899999999999999999998886 99999988888996  5788877


Q ss_pred             HHHHhhcCCCCCceeeeeeecCCCCCcccccCCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCchhhhhhhccCCcc
Q 026231          116 DIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPNRRTDDEPVSKRLKKKGNLD  195 (241)
Q Consensus       116 ~~~~e~~~g~~~n~~liN~Y~~G~d~i~~H~D~~~~~g~~~~IasvSLG~~r~f~fr~~~~~~~~~~~~~~~~~~~~~~~  195 (241)
                      +.+. ..++..||+||||+|++|+|+|+||+|++..++.+++|||||||++|.|.|+++..++.+.         .....
T Consensus        89 ~~~~-~~~g~~~n~~LvN~Y~~G~d~i~~H~D~~~~~~~~~~IasvSLG~~~~f~~~~~~~~~~~~---------~~~~~  158 (204)
T 3s57_A           89 DHVS-GVTGQTFNFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSRGKSP---------SRRVA  158 (204)
T ss_dssp             HHHH-HHHCCCCSEEEEEEESSTTCCEEEECCCCTTBCTTCCEEEEEEESCEEEEEEEGGGCSSSC---------SCCCC
T ss_pred             HHHH-HHhCCCCceeEEEEECCCCCcccceecChhhccCCCcEEEEECCCceEEEEEEcCCCcccc---------ccCCc
Confidence            7663 4458899999999999999999999999998888899999999999999999865431100         01234


Q ss_pred             ceEEEcCCCcEEEEccCccccccccccccCCCCCceEEEeccccc
Q 026231          196 QHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVL  240 (241)
Q Consensus       196 ~~~l~L~~gsllvM~g~~q~~w~H~Ip~~~~~~~~RISlTFR~~~  240 (241)
                      .+++.|++|||+||.|++|..|+|+||+.+...++|||||||+++
T Consensus       159 ~~~~~L~~GsllvM~g~~q~~w~H~Ip~~~~~~~~RislTFR~i~  203 (204)
T 3s57_A          159 VVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKIL  203 (204)
T ss_dssp             CEEEEECTTEEEEEETTHHHHEEEEECCCTTCCSCEEEEEEECBC
T ss_pred             eEEEECCCCCEEEECchhhheeEeeccccCCCCCCEEEEEeeeec
Confidence            688999999999999999999999999988788999999999975
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>3lfm_A Protein FTO; FAT MASS and obesity associated (FTO) protein, Fe2+/2-oxoGlu (2-OG)-dependent oxidative DNA/RNA demethylases, oxidoreduc; HET: 3DT OGA; 2.50A {Homo sapiens} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 241
d2iuwa1210 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo s 9e-40
d2fdia1200 b.82.2.10 (A:15-214) Alkylated DNA repair protein 1e-17
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 210 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: AlkB homolog 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (338), Expect = 9e-40
 Identities = 62/204 (30%), Positives = 92/204 (45%), Gaps = 13/204 (6%)

Query: 37  SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYS 96
           S V  +P  + ++++    + L   +PW + T      +  QPR T +          Y+
Sbjct: 19  SRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWYGELP-----YT 73

Query: 97  GYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTP 156
             R        + P+   L   ++   G  FNSLL N Y+   D V WH+DDE   G  P
Sbjct: 74  YSRITMEPNPHWHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCP 133

Query: 157 EIASVSFGCERDFLLKIKPNRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRD 216
            IAS+SFG  R F ++ KP    + +             +    L HG++L+M G TQ D
Sbjct: 134 IIASLSFGATRTFEMRKKPPPEENGDYTYVE--------RVKIPLDHGTLLIMEGATQAD 185

Query: 217 WIHSVPRRAKAESTRINLTFRHVL 240
           W H VP+   +   R+NLTFR V 
Sbjct: 186 WQHRVPKEYHSREPRVNLTFRTVY 209
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Length = 200 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query241
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 100.0
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 100.0
d1vrba1319 Putative asparaginyl hydroxylase YxbC {Bacillus su 82.76
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: AlkB homolog 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-43  Score=293.26  Aligned_cols=197  Identities=32%  Similarity=0.566  Sum_probs=161.9

Q ss_pred             EEeCCCC-ceEEEeCCCCCHHHHHHHHHHHHhcCCCCCceeeecCeEEeecceeeeeCCCCccceeecCCCCC-CCCCCC
Q 026231           30 VVDLGNG-SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPH-PYSWDD  107 (241)
Q Consensus        30 ~~~l~~~-~~~~~~~~fl~~~ea~~L~~~l~~~~~w~~~~~~~~G~~~~~pR~~~~~~~~g~~~y~ysg~~~~-~~~w~~  107 (241)
                      .-..|.| +++.|+||||+++||+.||+.|+++++|.+...+++|+....||+++|+++..   |.|++.... ..+|+ 
T Consensus        11 ~~~~p~g~~~l~y~p~fLs~~e~~~Ll~~L~~e~~w~~~~~~~~g~~~~~pR~~~~~~d~~---y~y~~~~~~~~~~~~-   86 (210)
T d2iuwa1          11 ISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWYGELP---YTYSRITMEPNPHWH-   86 (210)
T ss_dssp             EECCSSSCEEEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEESSSCEEECSSEEEEEECCC---TTSCHHHHCCBSSCC-
T ss_pred             eccCCCCcceEEEECCcCCHHHHHHHHHHHHhhCCccccceeccCcccceeeeeEEecCcC---ccccccccccCCCCc-
Confidence            3334444 47999999999999999999999999999999999999999999999998643   777766443 24564 


Q ss_pred             CchHHHHHHHHHhhcCCCCCceeeeeeecCCCCCcccccCCCCccCCCCeEEEEEcCCceeeEEeeCCCCCCCCchhhhh
Q 026231          108 FPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPNRRTDDEPVSKR  187 (241)
Q Consensus       108 ~P~L~~~~~~~~e~~~g~~~n~~liN~Y~~G~d~i~~H~D~~~~~g~~~~IasvSLG~~r~f~fr~~~~~~~~~~~~~~~  187 (241)
                       |.|..+.+.+.+ .++..+|.|+||+|.+|+++|+||+|++..++++++||+||||++|.|.|+++.......+     
T Consensus        87 -~~l~~l~~~~~~-~~~~~~~~~~ln~Y~~~~~~I~~H~D~~~~~~~~~~I~slSlG~~~~~~~r~~~~~~~~~~-----  159 (210)
T d2iuwa1          87 -PVLRTLKNRIEE-NTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENGD-----  159 (210)
T ss_dssp             -HHHHHHHHHHHH-HHSCCCCEEEEEEECSTTCCEEEECCCCGGGCSSCCEEEEEEESCEEEEEEECCC-----------
T ss_pred             -HHHHHHHHhhhh-hcCccchhhhhhccccCCCccccCcCCchhcccCCceeEEeeCCceEEEEccccccccCCc-----
Confidence             467776666644 3478899999999999888999999999999999999999999999999998665321110     


Q ss_pred             hhccCCccceEEEcCCCcEEEEccCccccccccccccCCCCCceEEEeccccc
Q 026231          188 LKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVL  240 (241)
Q Consensus       188 ~~~~~~~~~~~l~L~~gsllvM~g~~q~~w~H~Ip~~~~~~~~RISlTFR~~~  240 (241)
                         ......++|.|++|||+||.|++|+.|+|+||+++...++|||||||++.
T Consensus       160 ---~~~~~~~~i~L~~gsl~vm~g~~~~~~~H~Ip~~~~~~~~RiSlTfR~v~  209 (210)
T d2iuwa1         160 ---YTYVERVKIPLDHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVY  209 (210)
T ss_dssp             -----CCCEEEEEECTTCEEEEEETHHHHEEEEECCCSSCCCCEEEEEEECCC
T ss_pred             ---cCCCceEEEEcCCCCEEEeCchhhCceEccCCccCCCCCCeEEEEEEeec
Confidence               11245788999999999999999999999999998889999999999874
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure